Query 002716
Match_columns 889
No_of_seqs 943 out of 5988
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.1E-43 6.7E-48 374.5 33.2 446 354-841 23-489 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 1.5E-38 3.2E-43 338.9 32.0 373 379-819 112-501 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-34 3.7E-39 361.6 60.5 480 363-884 380-880 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-34 7.6E-39 358.7 56.8 478 360-878 36-570 (899)
5 PRK11447 cellulose synthase su 100.0 9.5E-33 2.1E-37 349.3 58.1 474 362-874 44-704 (1157)
6 PRK11447 cellulose synthase su 100.0 1.8E-31 3.9E-36 337.7 65.0 473 360-877 161-750 (1157)
7 TIGR00990 3a0801s09 mitochondr 100.0 5.5E-30 1.2E-34 305.0 50.1 426 382-876 126-577 (615)
8 PRK09782 bacteriophage N4 rece 100.0 2.5E-27 5.3E-32 286.8 56.0 497 359-885 57-721 (987)
9 TIGR00990 3a0801s09 mitochondr 100.0 5.2E-28 1.1E-32 288.1 46.6 410 360-841 141-575 (615)
10 KOG2002 TPR-containing nuclear 100.0 8.3E-27 1.8E-31 262.9 49.6 374 364-775 148-561 (1018)
11 KOG2002 TPR-containing nuclear 100.0 7E-27 1.5E-31 263.5 43.3 474 363-878 216-753 (1018)
12 PRK09782 bacteriophage N4 rece 100.0 5.8E-26 1.3E-30 274.9 53.9 492 383-884 44-686 (987)
13 PRK15174 Vi polysaccharide exp 100.0 2.1E-25 4.5E-30 265.0 45.3 334 462-871 59-404 (656)
14 PRK15174 Vi polysaccharide exp 100.0 7.9E-26 1.7E-30 268.6 41.7 332 479-875 42-386 (656)
15 PRK10049 pgaA outer membrane p 100.0 3.2E-25 7E-30 268.9 43.3 386 462-884 32-470 (765)
16 KOG0547 Translocase of outer m 100.0 5.8E-25 1.2E-29 230.7 36.7 377 378-841 110-570 (606)
17 KOG0547 Translocase of outer m 99.9 2.3E-24 4.9E-29 226.3 34.2 399 443-884 116-580 (606)
18 PRK10049 pgaA outer membrane p 99.9 1.1E-23 2.4E-28 255.6 43.1 387 391-845 23-464 (765)
19 KOG0624 dsRNA-activated protei 99.9 4.1E-22 8.9E-27 200.4 32.4 324 448-841 44-374 (504)
20 PRK14574 hmsH outer membrane p 99.9 8.9E-21 1.9E-25 225.6 49.2 428 385-880 36-523 (822)
21 KOG1126 DNA-binding cell divis 99.9 1.2E-22 2.6E-27 222.4 28.1 301 482-876 320-626 (638)
22 KOG0548 Molecular co-chaperone 99.9 1.9E-21 4.2E-26 208.1 33.7 409 448-886 8-471 (539)
23 KOG1126 DNA-binding cell divis 99.9 3E-22 6.5E-27 219.4 26.0 298 449-841 324-624 (638)
24 KOG1155 Anaphase-promoting com 99.9 6E-21 1.3E-25 199.7 33.7 363 383-803 164-553 (559)
25 PRK11788 tetratricopeptide rep 99.9 8.5E-21 1.8E-25 214.4 37.8 304 480-874 36-355 (389)
26 KOG2003 TPR repeat-containing 99.9 7.3E-21 1.6E-25 197.1 31.1 462 385-884 203-703 (840)
27 KOG0495 HAT repeat protein [RN 99.9 7.7E-18 1.7E-22 182.5 55.2 477 363-882 393-892 (913)
28 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.2E-25 212.4 35.9 263 448-776 41-314 (389)
29 KOG1155 Anaphase-promoting com 99.9 2.4E-19 5.1E-24 187.8 38.3 368 421-886 170-552 (559)
30 PRK14574 hmsH outer membrane p 99.9 1.1E-18 2.5E-23 207.7 46.0 402 452-881 44-490 (822)
31 PHA02790 Kelch-like protein; P 99.9 3.1E-22 6.7E-27 229.4 10.9 146 176-325 17-164 (480)
32 KOG1174 Anaphase-promoting com 99.9 3.3E-18 7.1E-23 176.5 38.7 283 594-887 222-517 (564)
33 PHA02713 hypothetical protein; 99.9 9.1E-22 2E-26 228.6 14.2 145 175-325 19-165 (557)
34 KOG1173 Anaphase-promoting com 99.9 1.9E-18 4E-23 185.8 36.6 415 454-884 28-532 (611)
35 KOG1173 Anaphase-promoting com 99.9 7E-19 1.5E-23 189.0 33.0 272 478-843 243-524 (611)
36 KOG0624 dsRNA-activated protei 99.9 5.6E-19 1.2E-23 178.0 29.7 329 475-885 34-385 (504)
37 PHA03098 kelch-like protein; P 99.8 1.2E-20 2.6E-25 221.4 18.3 141 177-325 5-147 (534)
38 KOG4350 Uncharacterized conser 99.8 1.3E-21 2.9E-26 199.5 8.7 150 176-328 39-190 (620)
39 KOG4441 Proteins containing BT 99.8 6.9E-21 1.5E-25 220.0 15.6 148 174-325 29-176 (571)
40 KOG0548 Molecular co-chaperone 99.8 3.7E-18 8E-23 183.1 34.8 442 387-866 6-485 (539)
41 PLN03081 pentatricopeptide (PP 99.8 2.6E-17 5.5E-22 199.4 46.1 439 386-870 90-557 (697)
42 PLN03077 Protein ECB2; Provisi 99.8 1.5E-17 3.3E-22 206.2 44.3 446 388-884 227-700 (857)
43 KOG2003 TPR repeat-containing 99.8 5.8E-18 1.3E-22 175.8 30.4 407 387-845 241-698 (840)
44 PLN03077 Protein ECB2; Provisi 99.8 1.4E-16 3E-21 197.7 46.6 440 385-869 255-719 (857)
45 KOG2076 RNA polymerase III tra 99.8 2.4E-17 5.3E-22 186.1 34.1 82 788-869 428-511 (895)
46 KOG2076 RNA polymerase III tra 99.8 1.4E-16 3E-21 180.0 38.3 353 481-868 141-553 (895)
47 KOG0495 HAT repeat protein [RN 99.8 2.4E-15 5.2E-20 163.5 46.1 437 365-880 365-856 (913)
48 PLN03081 pentatricopeptide (PP 99.8 2.3E-16 4.9E-21 191.2 41.9 408 385-837 125-557 (697)
49 TIGR00540 hemY_coli hemY prote 99.8 7.8E-17 1.7E-21 182.0 35.2 291 519-870 91-399 (409)
50 PLN03218 maturation of RBCL 1; 99.8 1.8E-15 4E-20 185.3 48.9 338 392-771 379-746 (1060)
51 PLN03218 maturation of RBCL 1; 99.8 2E-15 4.4E-20 184.9 48.9 373 361-775 385-785 (1060)
52 KOG4162 Predicted calmodulin-b 99.8 6.7E-16 1.5E-20 171.8 40.2 398 453-876 334-789 (799)
53 KOG4162 Predicted calmodulin-b 99.8 2.3E-15 5E-20 167.6 41.2 405 383-841 323-787 (799)
54 PRK10747 putative protoheme IX 99.8 2.4E-15 5.2E-20 169.0 38.2 243 594-871 142-391 (398)
55 PRK12370 invasion protein regu 99.8 1.7E-16 3.6E-21 186.0 29.4 200 462-685 278-489 (553)
56 PRK12370 invasion protein regu 99.8 4.5E-16 9.7E-21 182.4 31.3 261 514-871 260-536 (553)
57 KOG1174 Anaphase-promoting com 99.8 3.5E-15 7.6E-20 154.4 33.4 387 389-842 103-505 (564)
58 KOG0550 Molecular chaperone (D 99.7 1.3E-16 2.9E-21 165.4 20.6 292 444-840 51-353 (486)
59 PF13429 TPR_15: Tetratricopep 99.7 1.5E-17 3.2E-22 178.6 14.3 257 484-836 13-276 (280)
60 PRK11189 lipoprotein NlpI; Pro 99.7 5.8E-16 1.2E-20 166.7 26.2 230 526-841 40-269 (296)
61 TIGR00540 hemY_coli hemY prote 99.7 3.2E-15 6.8E-20 169.0 33.4 281 462-773 101-399 (409)
62 PF13429 TPR_15: Tetratricopep 99.7 1.2E-17 2.5E-22 179.4 12.6 256 449-773 15-277 (280)
63 KOG1127 TPR repeat-containing 99.7 2.9E-15 6.3E-20 169.7 32.0 381 462-868 475-911 (1238)
64 KOG1127 TPR repeat-containing 99.7 6.6E-15 1.4E-19 166.9 34.8 425 429-878 472-970 (1238)
65 KOG1129 TPR repeat-containing 99.7 6.1E-17 1.3E-21 162.5 16.4 231 484-775 228-460 (478)
66 KOG1129 TPR repeat-containing 99.7 3.4E-16 7.4E-21 157.2 20.5 259 488-841 188-462 (478)
67 PRK10747 putative protoheme IX 99.7 1.3E-14 2.8E-19 163.1 36.0 305 381-774 82-391 (398)
68 PRK11189 lipoprotein NlpI; Pro 99.7 2.8E-15 6E-20 161.4 27.7 220 493-744 40-268 (296)
69 KOG1156 N-terminal acetyltrans 99.7 4.4E-14 9.6E-19 154.6 36.6 363 480-878 8-442 (700)
70 KOG2075 Topoisomerase TOP1-int 99.7 3.9E-17 8.4E-22 172.2 11.8 157 170-329 103-264 (521)
71 KOG0550 Molecular chaperone (D 99.7 3.6E-15 7.9E-20 154.8 25.8 354 422-867 56-440 (486)
72 COG3063 PilF Tfp pilus assembl 99.7 4.9E-15 1.1E-19 143.4 24.8 207 604-880 35-246 (250)
73 TIGR02521 type_IV_pilW type IV 99.7 1.6E-14 3.6E-19 149.7 26.0 169 479-671 31-202 (234)
74 KOG1125 TPR repeat-containing 99.7 1.9E-15 4.2E-20 163.7 18.7 222 608-840 289-530 (579)
75 TIGR02521 type_IV_pilW type IV 99.7 9.4E-15 2E-19 151.5 23.5 195 447-668 36-233 (234)
76 cd05804 StaR_like StaR_like; a 99.7 9.4E-14 2E-18 154.8 32.1 315 474-871 1-337 (355)
77 KOG1125 TPR repeat-containing 99.7 4E-15 8.7E-20 161.3 19.2 248 449-761 292-559 (579)
78 COG2956 Predicted N-acetylgluc 99.7 5.1E-13 1.1E-17 135.0 32.4 255 461-779 51-317 (389)
79 KOG1156 N-terminal acetyltrans 99.6 3.5E-12 7.6E-17 139.9 41.2 262 385-667 9-283 (700)
80 COG3063 PilF Tfp pilus assembl 99.6 3.2E-14 6.9E-19 137.9 21.0 199 448-671 41-240 (250)
81 PLN02789 farnesyltranstransfer 99.6 5.8E-14 1.3E-18 150.7 25.1 199 462-684 54-268 (320)
82 KOG4591 Uncharacterized conser 99.6 2E-15 4.3E-20 140.4 11.6 150 176-332 61-222 (280)
83 KOG1840 Kinesin light chain [C 99.6 4.6E-13 9.9E-18 149.8 31.8 239 553-836 200-478 (508)
84 KOG1840 Kinesin light chain [C 99.6 1E-13 2.3E-18 154.9 26.5 259 470-774 190-480 (508)
85 PLN02789 farnesyltranstransfer 99.6 1.1E-13 2.5E-18 148.5 25.9 215 481-756 39-267 (320)
86 COG2956 Predicted N-acetylgluc 99.6 2.9E-12 6.2E-17 129.6 33.3 272 483-845 39-319 (389)
87 PF00651 BTB: BTB/POZ domain; 99.6 9.6E-16 2.1E-20 139.7 7.1 101 177-280 6-109 (111)
88 KOG2376 Signal recognition par 99.6 1E-11 2.2E-16 135.0 37.6 404 462-878 29-495 (652)
89 KOG4682 Uncharacterized conser 99.6 1.1E-14 2.5E-19 149.8 10.8 154 163-319 49-206 (488)
90 smart00225 BTB Broad-Complex, 99.6 1.3E-14 2.9E-19 126.3 9.4 90 183-275 1-90 (90)
91 KOG1915 Cell cycle control pro 99.5 1.9E-09 4.2E-14 114.2 47.6 463 384-870 74-585 (677)
92 TIGR03302 OM_YfiO outer membra 99.5 3.6E-12 7.7E-17 133.1 22.0 176 473-669 27-234 (235)
93 cd05804 StaR_like StaR_like; a 99.5 4E-11 8.7E-16 133.6 31.1 284 462-775 23-338 (355)
94 KOG0783 Uncharacterized conser 99.5 4.6E-14 9.9E-19 156.4 6.1 142 177-321 706-853 (1267)
95 TIGR03302 OM_YfiO outer membra 99.5 5.9E-12 1.3E-16 131.5 21.6 181 553-775 34-234 (235)
96 KOG3785 Uncharacterized conser 99.4 5E-10 1.1E-14 114.4 31.7 264 462-760 39-332 (557)
97 KOG2376 Signal recognition par 99.4 3.1E-10 6.8E-15 123.6 32.0 307 515-865 15-400 (652)
98 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.6E-14 112.6 35.9 291 519-870 91-390 (400)
99 KOG3785 Uncharacterized conser 99.4 1.4E-09 3E-14 111.2 33.4 403 393-873 32-493 (557)
100 KOG1915 Cell cycle control pro 99.4 5E-09 1.1E-13 111.1 38.4 380 455-872 86-502 (677)
101 PF12569 NARP1: NMDA receptor- 99.4 1.3E-09 2.9E-14 123.8 36.5 68 479-546 4-72 (517)
102 PRK14720 transcript cleavage f 99.4 1.5E-10 3.3E-15 136.7 29.8 282 473-874 25-310 (906)
103 KOG1130 Predicted G-alpha GTPa 99.4 9.3E-12 2E-16 129.1 16.4 291 517-869 22-343 (639)
104 PRK15359 type III secretion sy 99.4 1.4E-11 2.9E-16 117.4 15.3 123 501-649 15-137 (144)
105 KOG1130 Predicted G-alpha GTPa 99.4 4.3E-12 9.3E-17 131.5 12.2 265 486-775 24-346 (639)
106 COG3071 HemY Uncharacterized e 99.4 7.3E-09 1.6E-13 108.7 35.8 303 382-773 83-390 (400)
107 PRK15359 type III secretion sy 99.3 1.5E-11 3.2E-16 117.2 14.5 126 465-617 13-139 (144)
108 KOG4340 Uncharacterized conser 99.3 2.1E-09 4.5E-14 107.6 27.4 369 454-874 22-447 (459)
109 PRK04841 transcriptional regul 99.3 4.1E-09 8.9E-14 132.7 37.3 361 481-876 343-766 (903)
110 PRK04841 transcriptional regul 99.3 4.1E-09 8.9E-14 132.6 36.5 366 382-779 340-766 (903)
111 PRK10370 formate-dependent nit 99.3 1.7E-10 3.6E-15 116.0 18.5 152 486-671 23-177 (198)
112 PF12569 NARP1: NMDA receptor- 99.3 3.1E-09 6.8E-14 120.8 30.5 290 553-871 5-335 (517)
113 COG5010 TadD Flp pilus assembl 99.3 4.5E-10 9.7E-15 111.9 19.1 178 462-664 50-228 (257)
114 KOG2047 mRNA splicing factor [ 99.2 4.8E-06 1E-10 92.1 51.1 494 291-823 144-709 (835)
115 KOG3060 Uncharacterized conser 99.2 2.2E-09 4.8E-14 105.7 21.6 180 474-677 47-231 (289)
116 KOG4340 Uncharacterized conser 99.2 1.3E-08 2.7E-13 102.1 25.4 378 394-845 21-451 (459)
117 PRK10370 formate-dependent nit 99.2 6.4E-10 1.4E-14 111.8 15.9 108 462-575 56-167 (198)
118 PRK15179 Vi polysaccharide bio 99.2 1.7E-09 3.6E-14 127.5 21.3 148 465-636 72-220 (694)
119 KOG2047 mRNA splicing factor [ 99.2 2E-07 4.4E-12 102.6 35.4 404 467-885 90-596 (835)
120 TIGR02552 LcrH_SycD type III s 99.2 7.1E-10 1.5E-14 104.8 14.8 114 534-671 5-118 (135)
121 PRK14720 transcript cleavage f 99.1 8.5E-09 1.8E-13 122.2 26.1 266 451-807 40-310 (906)
122 COG5010 TadD Flp pilus assembl 99.1 5.8E-09 1.3E-13 104.1 20.9 181 495-711 49-231 (257)
123 TIGR02552 LcrH_SycD type III s 99.1 2.1E-09 4.5E-14 101.6 16.0 115 501-639 5-120 (135)
124 KOG3060 Uncharacterized conser 99.1 1.7E-08 3.8E-13 99.5 22.5 176 513-750 53-231 (289)
125 KOG1128 Uncharacterized conser 99.1 2.7E-08 5.8E-13 111.5 26.1 215 388-668 403-617 (777)
126 PRK15179 Vi polysaccharide bio 99.1 3E-09 6.5E-14 125.4 19.9 133 511-667 85-217 (694)
127 KOG0553 TPR repeat-containing 99.1 5.4E-10 1.2E-14 113.3 11.3 118 443-569 82-200 (304)
128 KOG1128 Uncharacterized conser 99.1 5.1E-09 1.1E-13 117.1 18.7 221 476-741 395-616 (777)
129 KOG0553 TPR repeat-containing 99.1 1.2E-09 2.5E-14 111.0 12.3 117 481-621 83-200 (304)
130 COG4783 Putative Zn-dependent 99.0 8E-08 1.7E-12 103.7 22.6 148 553-742 307-455 (484)
131 COG4785 NlpI Lipoprotein NlpI, 99.0 3.4E-08 7.3E-13 94.9 17.3 217 511-760 64-291 (297)
132 PF04733 Coatomer_E: Coatomer 99.0 5E-08 1.1E-12 103.8 20.7 237 604-883 35-278 (290)
133 PF04733 Coatomer_E: Coatomer 99.0 2.5E-08 5.4E-13 106.1 18.3 257 487-844 9-272 (290)
134 COG4783 Putative Zn-dependent 98.9 1.8E-07 3.9E-12 101.1 23.0 134 511-668 305-438 (484)
135 PRK15363 pathogenicity island 98.9 2.6E-08 5.7E-13 93.1 14.1 100 511-634 34-133 (157)
136 PRK15363 pathogenicity island 98.9 2.8E-08 6E-13 93.0 13.9 98 553-668 36-133 (157)
137 PF13525 YfiO: Outer membrane 98.9 2.3E-07 5E-12 94.0 21.1 183 511-764 4-198 (203)
138 PF13525 YfiO: Outer membrane 98.9 1.6E-07 3.5E-12 95.2 19.0 160 478-658 4-198 (203)
139 KOG1941 Acetylcholine receptor 98.8 8.1E-07 1.8E-11 91.7 23.4 170 481-668 8-192 (518)
140 PRK10866 outer membrane biogen 98.8 3.2E-07 7E-12 95.2 21.1 179 477-663 30-237 (243)
141 PRK10866 outer membrane biogen 98.8 5.5E-07 1.2E-11 93.5 22.4 173 553-770 33-238 (243)
142 PLN03088 SGT1, suppressor of 98.8 4.9E-08 1.1E-12 107.7 15.2 112 515-650 5-116 (356)
143 KOG3617 WD40 and TPR repeat-co 98.8 4.5E-06 9.7E-11 94.2 30.1 309 484-867 805-1171(1416)
144 PLN03088 SGT1, suppressor of 98.8 8.8E-08 1.9E-12 105.7 15.3 112 555-684 5-117 (356)
145 KOG3617 WD40 and TPR repeat-co 98.8 9.4E-06 2E-10 91.7 29.6 287 452-770 810-1171(1416)
146 KOG1941 Acetylcholine receptor 98.7 5.2E-06 1.1E-10 85.9 24.6 238 387-668 10-276 (518)
147 PF13414 TPR_11: TPR repeat; P 98.7 5.4E-08 1.2E-12 79.9 8.5 67 603-669 2-69 (69)
148 PRK10153 DNA-binding transcrip 98.7 6.5E-07 1.4E-11 102.8 19.5 143 513-676 340-491 (517)
149 PF14938 SNAP: Soluble NSF att 98.7 1.2E-06 2.7E-11 93.7 18.7 220 606-886 37-279 (282)
150 TIGR02795 tol_pal_ybgF tol-pal 98.6 6E-07 1.3E-11 82.3 13.9 112 745-883 3-118 (119)
151 PRK02603 photosystem I assembl 98.6 1E-06 2.2E-11 87.0 16.3 87 479-571 35-125 (172)
152 TIGR02795 tol_pal_ybgF tol-pal 98.6 5.9E-07 1.3E-11 82.4 13.7 32 606-637 78-109 (119)
153 CHL00033 ycf3 photosystem I as 98.6 5.4E-07 1.2E-11 88.6 14.2 82 604-685 35-120 (168)
154 cd00189 TPR Tetratricopeptide 98.6 3.7E-07 8.1E-12 78.9 11.8 99 554-670 2-100 (100)
155 COG4785 NlpI Lipoprotein NlpI, 98.6 2.5E-06 5.3E-11 82.4 17.4 194 553-775 66-268 (297)
156 PRK11906 transcriptional regul 98.6 2E-06 4.4E-11 93.7 19.0 140 515-671 258-405 (458)
157 KOG2300 Uncharacterized conser 98.6 0.001 2.2E-08 72.0 38.3 381 480-879 8-482 (629)
158 PRK02603 photosystem I assembl 98.6 6.2E-07 1.3E-11 88.5 13.8 86 600-685 31-120 (172)
159 PF14938 SNAP: Soluble NSF att 98.6 1.8E-06 3.9E-11 92.4 18.1 138 513-668 115-267 (282)
160 PF13414 TPR_11: TPR repeat; P 98.6 1.4E-07 3E-12 77.4 7.4 66 478-543 2-69 (69)
161 PRK11906 transcriptional regul 98.6 2.6E-06 5.7E-11 92.8 19.1 159 482-664 258-433 (458)
162 COG4235 Cytochrome c biogenesi 98.6 1.2E-06 2.7E-11 90.0 15.7 120 528-671 138-260 (287)
163 COG4235 Cytochrome c biogenesi 98.6 7.9E-07 1.7E-11 91.4 14.2 120 462-605 139-262 (287)
164 cd00189 TPR Tetratricopeptide 98.6 6.6E-07 1.4E-11 77.3 11.9 97 515-635 3-99 (100)
165 PF09976 TPR_21: Tetratricopep 98.6 2.4E-06 5.3E-11 81.6 16.0 120 524-665 23-145 (145)
166 PF09976 TPR_21: Tetratricopep 98.5 3.1E-06 6.7E-11 80.8 16.3 121 613-770 20-144 (145)
167 KOG3616 Selective LIM binding 98.5 0.00034 7.3E-09 78.5 33.5 242 379-665 657-909 (1636)
168 KOG2053 Mitochondrial inherita 98.5 0.002 4.3E-08 74.9 40.8 406 455-871 22-537 (932)
169 CHL00033 ycf3 photosystem I as 98.5 1.6E-06 3.5E-11 85.2 14.4 102 493-615 13-117 (168)
170 COG3898 Uncharacterized membra 98.5 0.00067 1.4E-08 71.5 33.6 221 615-871 165-393 (531)
171 KOG0543 FKBP-type peptidyl-pro 98.5 1.5E-06 3.3E-11 92.3 14.9 97 553-667 258-355 (397)
172 PF13432 TPR_16: Tetratricopep 98.5 3.1E-07 6.7E-12 74.3 7.6 64 608-671 1-64 (65)
173 PF13432 TPR_16: Tetratricopep 98.5 3.8E-07 8.2E-12 73.8 7.7 64 483-546 1-65 (65)
174 COG3898 Uncharacterized membra 98.5 0.0003 6.4E-09 74.1 30.4 263 482-775 123-394 (531)
175 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00024 5.2E-09 72.3 29.7 222 492-776 36-268 (291)
176 KOG0543 FKBP-type peptidyl-pro 98.5 2.4E-06 5.2E-11 90.9 14.2 128 386-567 211-340 (397)
177 COG0457 NrfG FOG: TPR repeat [ 98.4 0.00011 2.4E-09 74.8 26.4 185 462-670 40-234 (291)
178 PRK10153 DNA-binding transcrip 98.4 4.8E-06 1E-10 95.7 17.2 133 482-639 342-488 (517)
179 PF12895 Apc3: Anaphase-promot 98.4 5E-07 1.1E-11 77.4 7.0 81 565-664 2-84 (84)
180 KOG4648 Uncharacterized conser 98.4 2.8E-07 6.1E-12 94.3 5.9 191 445-671 100-300 (536)
181 KOG2471 TPR repeat-containing 98.4 6.5E-05 1.4E-09 80.8 22.0 366 482-869 209-683 (696)
182 PF12895 Apc3: Anaphase-promot 98.4 1.2E-06 2.6E-11 74.9 7.3 83 525-630 2-84 (84)
183 KOG0511 Ankyrin repeat protein 98.3 1.6E-06 3.4E-11 89.6 9.1 136 191-330 301-445 (516)
184 PRK15331 chaperone protein Sic 98.3 9.7E-06 2.1E-10 76.4 13.7 104 505-632 29-133 (165)
185 PRK10803 tol-pal system protei 98.3 8.3E-06 1.8E-10 85.3 14.7 107 479-606 142-253 (263)
186 PRK15331 chaperone protein Sic 98.3 5.8E-06 1.3E-10 77.9 12.1 110 553-681 38-147 (165)
187 COG4105 ComL DNA uptake lipopr 98.3 5.8E-05 1.3E-09 76.2 19.7 65 715-779 170-239 (254)
188 KOG1070 rRNA processing protei 98.3 0.00014 3.1E-09 87.3 25.8 243 622-868 1442-1698(1710)
189 KOG4648 Uncharacterized conser 98.3 5.5E-07 1.2E-11 92.2 5.1 98 556-671 101-198 (536)
190 COG4105 ComL DNA uptake lipopr 98.3 9E-05 2E-09 74.8 20.3 175 711-885 33-248 (254)
191 KOG2053 Mitochondrial inherita 98.3 0.0016 3.5E-08 75.6 32.6 226 524-777 21-259 (932)
192 KOG3081 Vesicle coat complex C 98.3 0.00019 4.2E-09 72.1 21.2 256 612-884 16-285 (299)
193 PF10345 Cohesin_load: Cohesin 98.2 0.0027 5.8E-08 75.8 35.0 440 366-869 41-605 (608)
194 PRK10803 tol-pal system protei 98.2 2.2E-05 4.8E-10 82.2 15.2 108 511-639 141-252 (263)
195 KOG3081 Vesicle coat complex C 98.2 0.00025 5.4E-09 71.3 20.9 246 393-671 18-275 (299)
196 PF12688 TPR_5: Tetratrico pep 98.2 2.8E-05 6E-10 70.7 13.0 97 514-631 3-102 (120)
197 KOG1070 rRNA processing protei 98.2 0.00062 1.4E-08 82.0 27.3 216 462-742 1441-1664(1710)
198 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.9E-05 8.4E-10 84.5 16.4 117 520-663 177-293 (395)
199 PF13512 TPR_18: Tetratricopep 98.2 3.3E-05 7.2E-10 71.3 13.3 107 479-606 10-135 (142)
200 KOG4234 TPR repeat-containing 98.2 3.7E-05 8.1E-10 73.5 13.6 113 515-646 98-210 (271)
201 KOG0783 Uncharacterized conser 98.2 9.9E-07 2.2E-11 99.4 3.3 70 177-248 554-635 (1267)
202 PF14559 TPR_19: Tetratricopep 98.2 7.4E-06 1.6E-10 66.8 7.5 65 614-678 1-66 (68)
203 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 4.4E-05 9.6E-10 84.0 15.6 118 487-630 177-294 (395)
204 PF12688 TPR_5: Tetratrico pep 98.1 5.2E-05 1.1E-09 68.9 12.9 97 713-836 2-103 (120)
205 PF13371 TPR_9: Tetratricopept 98.1 1.1E-05 2.5E-10 66.7 8.0 70 815-884 2-72 (73)
206 KOG0985 Vesicle coat protein c 98.1 0.046 9.9E-07 64.4 38.6 379 477-886 982-1443(1666)
207 KOG4234 TPR repeat-containing 98.1 3E-05 6.5E-10 74.1 11.2 96 448-546 101-202 (271)
208 KOG1914 mRNA cleavage and poly 98.1 0.033 7.2E-07 61.6 38.5 377 469-870 10-464 (656)
209 COG4700 Uncharacterized protei 98.1 0.00042 9.1E-09 65.7 18.0 145 496-665 73-220 (251)
210 PF13371 TPR_9: Tetratricopept 98.1 1.8E-05 3.8E-10 65.6 8.2 62 610-671 1-62 (73)
211 KOG4555 TPR repeat-containing 98.0 5.6E-05 1.2E-09 67.2 11.0 87 787-873 56-147 (175)
212 PF14559 TPR_19: Tetratricopep 98.0 1.9E-05 4E-10 64.4 7.3 67 563-647 2-68 (68)
213 KOG2796 Uncharacterized conser 98.0 0.00032 6.9E-09 70.1 16.7 59 481-539 179-239 (366)
214 PF13512 TPR_18: Tetratricopep 98.0 0.00018 3.9E-09 66.5 13.9 127 712-883 10-141 (142)
215 KOG3616 Selective LIM binding 98.0 0.023 5E-07 64.4 32.0 104 718-835 712-818 (1636)
216 KOG2300 Uncharacterized conser 97.9 0.052 1.1E-06 59.3 34.1 396 462-873 26-517 (629)
217 COG1729 Uncharacterized protei 97.9 0.00015 3.3E-09 73.9 13.7 107 482-609 144-254 (262)
218 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 3.3E-05 7.2E-10 84.3 9.4 70 598-667 69-141 (453)
219 COG1729 Uncharacterized protei 97.9 0.00022 4.9E-09 72.8 14.3 106 515-641 144-252 (262)
220 PF13424 TPR_12: Tetratricopep 97.9 4.1E-05 8.9E-10 64.3 7.0 63 712-774 5-76 (78)
221 COG4700 Uncharacterized protei 97.8 0.0014 3.1E-08 62.2 17.2 124 715-868 92-220 (251)
222 KOG4555 TPR repeat-containing 97.8 0.00049 1.1E-08 61.3 12.7 86 486-573 50-136 (175)
223 PF13424 TPR_12: Tetratricopep 97.8 3.2E-05 6.9E-10 65.0 5.1 65 603-667 4-75 (78)
224 KOG1585 Protein required for f 97.8 0.0055 1.2E-07 60.9 20.5 58 518-575 37-94 (308)
225 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 8.8E-05 1.9E-09 81.1 9.0 70 473-542 69-142 (453)
226 KOG2716 Polymerase delta-inter 97.7 0.00021 4.6E-09 71.4 10.7 95 184-282 7-105 (230)
227 PF06552 TOM20_plant: Plant sp 97.7 0.00019 4.1E-09 68.4 9.6 98 620-747 7-115 (186)
228 KOG2838 Uncharacterized conser 97.6 3.8E-05 8.1E-10 76.1 3.7 115 192-318 262-391 (401)
229 KOG2796 Uncharacterized conser 97.6 0.0013 2.8E-08 65.9 14.2 140 514-671 179-319 (366)
230 KOG1586 Protein required for f 97.6 0.041 8.8E-07 54.6 23.7 67 714-780 115-190 (288)
231 KOG1586 Protein required for f 97.6 0.0076 1.7E-07 59.6 18.5 139 713-876 75-230 (288)
232 KOG2610 Uncharacterized conser 97.6 0.0062 1.3E-07 63.1 18.4 158 719-876 110-284 (491)
233 KOG3473 RNA polymerase II tran 97.5 0.00033 7.2E-09 58.1 7.2 79 184-265 19-110 (112)
234 PF06552 TOM20_plant: Plant sp 97.5 0.0014 3E-08 62.6 12.3 95 528-639 7-115 (186)
235 KOG2471 TPR repeat-containing 97.5 0.00047 1E-08 74.4 10.1 146 609-786 211-377 (696)
236 PF04184 ST7: ST7 protein; In 97.5 0.0068 1.5E-07 66.6 18.9 145 609-771 173-322 (539)
237 KOG1550 Extracellular protein 97.4 0.04 8.8E-07 64.7 25.8 296 390-772 219-537 (552)
238 PF10300 DUF3808: Protein of u 97.4 0.032 6.9E-07 64.1 24.0 114 758-871 247-377 (468)
239 PF10345 Cohesin_load: Cohesin 97.4 0.58 1.2E-05 56.0 36.3 150 462-631 38-206 (608)
240 PF13428 TPR_14: Tetratricopep 97.4 0.00042 9.2E-09 50.8 5.3 42 605-646 2-43 (44)
241 KOG4642 Chaperone-dependent E3 97.4 0.00044 9.6E-09 68.3 6.8 93 447-542 15-108 (284)
242 KOG0376 Serine-threonine phosp 97.3 0.00031 6.7E-09 76.6 6.2 92 452-546 14-106 (476)
243 PF02214 BTB_2: BTB/POZ domain 97.3 0.00053 1.1E-08 59.9 6.7 88 184-274 1-94 (94)
244 KOG0545 Aryl-hydrocarbon recep 97.3 0.0028 6.1E-08 62.9 12.1 119 384-546 179-298 (329)
245 KOG4507 Uncharacterized conser 97.3 0.026 5.7E-07 62.7 20.6 97 788-884 621-719 (886)
246 KOG2610 Uncharacterized conser 97.3 0.0097 2.1E-07 61.7 16.3 161 513-708 104-273 (491)
247 PF13281 DUF4071: Domain of un 97.3 0.016 3.4E-07 63.1 18.7 188 604-842 141-339 (374)
248 PF13431 TPR_17: Tetratricopep 97.3 0.00021 4.5E-09 49.0 2.8 33 468-500 2-34 (34)
249 KOG0376 Serine-threonine phosp 97.2 0.00039 8.5E-09 75.8 5.7 94 789-882 19-113 (476)
250 KOG1585 Protein required for f 97.2 0.05 1.1E-06 54.4 19.1 146 488-662 100-251 (308)
251 PF13281 DUF4071: Domain of un 97.2 0.027 5.9E-07 61.3 19.1 173 554-744 143-337 (374)
252 PF13431 TPR_17: Tetratricopep 97.2 0.0004 8.7E-09 47.6 3.3 33 797-829 2-34 (34)
253 COG3118 Thioredoxin domain-con 97.2 0.022 4.7E-07 58.9 17.1 159 481-663 136-297 (304)
254 KOG4642 Chaperone-dependent E3 97.2 0.00091 2E-08 66.2 6.6 86 484-575 15-101 (284)
255 PF04184 ST7: ST7 protein; In 97.1 0.017 3.6E-07 63.7 16.4 188 646-878 176-383 (539)
256 COG2909 MalT ATP-dependent tra 97.1 1.1 2.4E-05 53.3 39.5 119 482-619 418-552 (894)
257 PF05843 Suf: Suppressor of fo 97.1 0.014 3.1E-07 62.2 15.6 140 714-883 3-149 (280)
258 KOG0551 Hsp90 co-chaperone CNS 97.0 0.017 3.6E-07 60.2 14.7 90 480-575 82-176 (390)
259 KOG2838 Uncharacterized conser 97.0 0.0009 1.9E-08 66.6 5.2 66 181-248 130-197 (401)
260 PF00515 TPR_1: Tetratricopept 97.0 0.0016 3.4E-08 44.7 4.8 33 639-671 2-34 (34)
261 PF13428 TPR_14: Tetratricopep 97.0 0.0015 3.3E-08 47.8 4.9 42 513-560 2-43 (44)
262 COG3118 Thioredoxin domain-con 96.9 0.069 1.5E-06 55.3 18.2 142 515-685 137-286 (304)
263 KOG1987 Speckle-type POZ prote 96.9 0.00046 1E-08 74.6 2.7 120 190-313 109-231 (297)
264 KOG0890 Protein kinase of the 96.9 0.47 1E-05 61.7 28.9 104 712-815 1670-1796(2382)
265 KOG1258 mRNA processing protei 96.9 1.2 2.5E-05 50.8 36.2 177 712-888 297-488 (577)
266 KOG0545 Aryl-hydrocarbon recep 96.9 0.0048 1.1E-07 61.2 9.0 111 513-671 179-297 (329)
267 PF02259 FAT: FAT domain; Int 96.9 0.25 5.5E-06 54.6 24.4 157 712-873 146-341 (352)
268 KOG1550 Extracellular protein 96.9 0.24 5.1E-06 58.4 24.7 247 383-683 244-518 (552)
269 KOG0985 Vesicle coat protein c 96.9 1.7 3.7E-05 52.0 41.7 222 462-735 1121-1377(1666)
270 PF02259 FAT: FAT domain; Int 96.8 0.44 9.6E-06 52.7 25.9 143 600-757 142-305 (352)
271 COG2909 MalT ATP-dependent tra 96.8 1.8 3.8E-05 51.6 30.8 205 448-667 421-647 (894)
272 COG2976 Uncharacterized protei 96.8 0.038 8.2E-07 53.6 14.1 88 788-875 103-193 (207)
273 PF08631 SPO22: Meiosis protei 96.8 0.53 1.1E-05 50.2 24.9 235 490-739 4-273 (278)
274 PF07719 TPR_2: Tetratricopept 96.8 0.0025 5.4E-08 43.5 4.6 32 639-670 2-33 (34)
275 PF00515 TPR_1: Tetratricopept 96.8 0.0031 6.6E-08 43.2 4.8 33 809-841 2-34 (34)
276 COG2976 Uncharacterized protei 96.7 0.026 5.6E-07 54.7 12.5 65 482-546 129-193 (207)
277 PF07719 TPR_2: Tetratricopept 96.7 0.0036 7.7E-08 42.7 4.9 33 513-545 2-34 (34)
278 PF05843 Suf: Suppressor of fo 96.7 0.047 1E-06 58.3 15.9 132 481-636 3-139 (280)
279 KOG4507 Uncharacterized conser 96.7 0.32 7E-06 54.4 21.7 98 718-815 613-717 (886)
280 PF07079 DUF1347: Protein of u 96.6 1.5 3.3E-05 48.1 36.2 378 481-867 8-521 (549)
281 COG5107 RNA14 Pre-mRNA 3'-end 96.6 1.5 3.3E-05 47.9 31.2 393 467-882 30-506 (660)
282 PF10300 DUF3808: Protein of u 96.5 0.12 2.7E-06 59.3 18.6 173 466-665 178-374 (468)
283 KOG2041 WD40 repeat protein [G 96.5 2.1 4.5E-05 49.2 26.6 135 479-630 796-936 (1189)
284 KOG0551 Hsp90 co-chaperone CNS 96.4 0.013 2.8E-07 61.0 8.6 101 443-546 82-187 (390)
285 KOG0530 Protein farnesyltransf 96.2 0.53 1.2E-05 47.8 18.4 107 462-574 60-169 (318)
286 KOG2041 WD40 repeat protein [G 96.1 1.7 3.6E-05 50.0 23.5 32 506-537 686-717 (1189)
287 PF07079 DUF1347: Protein of u 96.1 2.9 6.3E-05 46.0 37.4 186 647-834 307-521 (549)
288 KOG1308 Hsp70-interacting prot 96.1 0.0024 5.3E-08 66.6 1.3 83 789-871 129-212 (377)
289 PF13176 TPR_7: Tetratricopept 96.0 0.0098 2.1E-07 41.3 3.7 28 385-412 1-28 (36)
290 PF03704 BTAD: Bacterial trans 95.9 0.099 2.1E-06 49.7 11.9 58 482-539 65-123 (146)
291 PF13181 TPR_8: Tetratricopept 95.8 0.015 3.3E-07 39.6 4.0 30 640-669 3-32 (34)
292 COG0790 FOG: TPR repeat, SEL1 95.8 2.3 4.9E-05 45.7 23.0 173 389-618 47-236 (292)
293 PF03704 BTAD: Bacterial trans 95.7 0.27 5.9E-06 46.6 14.0 111 518-665 12-123 (146)
294 smart00512 Skp1 Found in Skp1 95.7 0.049 1.1E-06 48.4 8.2 80 183-265 3-102 (104)
295 COG0790 FOG: TPR repeat, SEL1 95.7 1.4 3E-05 47.3 20.9 188 651-873 54-269 (292)
296 PF13181 TPR_8: Tetratricopept 95.6 0.023 4.9E-07 38.7 4.2 32 809-840 2-33 (34)
297 KOG3783 Uncharacterized conser 95.5 1.5 3.2E-05 49.4 20.0 82 462-543 250-334 (546)
298 KOG0530 Protein farnesyltransf 95.5 2.4 5.1E-05 43.3 19.6 173 489-685 53-236 (318)
299 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.043 9.4E-07 41.7 5.6 43 843-885 3-45 (53)
300 COG5107 RNA14 Pre-mRNA 3'-end 95.4 5.6 0.00012 43.7 31.8 439 371-841 30-535 (660)
301 PF13176 TPR_7: Tetratricopept 95.3 0.016 3.5E-07 40.2 2.8 25 715-739 2-26 (36)
302 PF13174 TPR_6: Tetratricopept 95.3 0.036 7.9E-07 37.3 4.5 33 513-545 1-33 (33)
303 KOG0890 Protein kinase of the 95.3 4.8 0.0001 53.1 25.7 311 517-871 1388-1732(2382)
304 PF14853 Fis1_TPR_C: Fis1 C-te 95.3 0.08 1.7E-06 40.2 6.6 43 513-561 2-44 (53)
305 KOG1308 Hsp70-interacting prot 95.2 0.023 5E-07 59.6 4.8 87 755-841 125-215 (377)
306 PF08424 NRDE-2: NRDE-2, neces 95.2 0.97 2.1E-05 49.3 17.7 151 591-742 6-184 (321)
307 KOG1464 COP9 signalosome, subu 95.1 0.49 1.1E-05 48.0 13.3 50 616-665 39-92 (440)
308 PF03931 Skp1_POZ: Skp1 family 94.7 0.12 2.6E-06 41.0 6.6 55 184-243 3-58 (62)
309 PF13174 TPR_6: Tetratricopept 94.6 0.052 1.1E-06 36.4 3.7 31 640-670 2-32 (33)
310 PF14561 TPR_20: Tetratricopep 94.4 0.28 6E-06 42.2 8.7 65 463-527 6-73 (90)
311 KOG1464 COP9 signalosome, subu 94.4 1.9 4E-05 44.0 15.5 50 491-540 39-93 (440)
312 PRK10941 hypothetical protein; 94.3 0.21 4.5E-06 52.5 9.2 77 810-886 183-260 (269)
313 KOG3364 Membrane protein invol 94.3 0.48 1E-05 43.2 10.0 78 808-885 32-115 (149)
314 KOG1665 AFH1-interacting prote 94.3 0.13 2.9E-06 50.2 7.0 94 180-276 7-105 (302)
315 PRK13184 pknD serine/threonine 94.3 19 0.00042 44.7 35.9 97 448-547 481-587 (932)
316 PF04910 Tcf25: Transcriptiona 94.2 1.6 3.4E-05 48.3 16.2 144 470-636 31-225 (360)
317 PF14561 TPR_20: Tetratricopep 94.2 0.33 7.2E-06 41.7 8.6 74 589-662 7-82 (90)
318 PF10602 RPN7: 26S proteasome 94.2 1.1 2.5E-05 44.0 13.6 118 696-838 17-143 (177)
319 PF09986 DUF2225: Uncharacteri 94.1 0.8 1.7E-05 46.5 12.7 84 492-575 90-188 (214)
320 PF08631 SPO22: Meiosis protei 93.9 11 0.00023 40.3 25.0 115 380-510 32-152 (278)
321 PF11822 DUF3342: Domain of un 93.9 0.17 3.6E-06 53.4 7.3 118 191-311 14-142 (317)
322 KOG1914 mRNA cleavage and poly 93.8 14 0.00031 41.7 37.4 91 713-803 367-464 (656)
323 COG4649 Uncharacterized protei 93.7 2.4 5.3E-05 40.5 13.7 111 712-851 94-210 (221)
324 PF08424 NRDE-2: NRDE-2, neces 93.5 5.1 0.00011 43.7 18.6 84 464-547 4-100 (321)
325 PF12968 DUF3856: Domain of Un 93.5 0.49 1.1E-05 42.0 8.2 101 383-506 7-127 (144)
326 PRK10941 hypothetical protein; 93.5 0.55 1.2E-05 49.3 10.4 76 554-647 183-258 (269)
327 PF04910 Tcf25: Transcriptiona 93.2 3.1 6.7E-05 46.0 16.3 36 504-539 31-67 (360)
328 PF09986 DUF2225: Uncharacteri 93.1 1 2.2E-05 45.7 11.4 97 617-743 90-196 (214)
329 KOG1538 Uncharacterized conser 93.0 5.5 0.00012 45.6 17.4 42 697-738 788-830 (1081)
330 KOG0511 Ankyrin repeat protein 92.9 0.11 2.4E-06 54.8 4.1 89 182-275 150-239 (516)
331 KOG3824 Huntingtin interacting 92.8 0.36 7.7E-06 49.9 7.5 71 608-678 120-191 (472)
332 PF13374 TPR_10: Tetratricopep 92.8 0.17 3.8E-06 35.9 4.0 30 383-412 2-31 (42)
333 PF04781 DUF627: Protein of un 92.8 2.5 5.4E-05 37.4 11.7 106 518-667 2-107 (111)
334 COG4649 Uncharacterized protei 92.6 9 0.0002 36.8 15.8 121 609-740 63-195 (221)
335 smart00028 TPR Tetratricopepti 92.4 0.2 4.3E-06 32.5 3.7 31 713-743 2-32 (34)
336 KOG2714 SETA binding protein S 92.4 0.41 8.9E-06 51.8 7.7 85 184-272 13-102 (465)
337 PF09613 HrpB1_HrpK: Bacterial 92.4 1.7 3.6E-05 41.4 10.9 106 554-678 12-117 (160)
338 PF04781 DUF627: Protein of un 92.3 1.8 3.9E-05 38.3 10.2 43 498-540 63-106 (111)
339 PF09613 HrpB1_HrpK: Bacterial 92.3 5.7 0.00012 37.9 14.2 80 606-685 12-92 (160)
340 PRK13184 pknD serine/threonine 92.2 39 0.00084 42.1 28.1 130 520-671 483-624 (932)
341 PF12968 DUF3856: Domain of Un 91.9 1.4 3E-05 39.2 8.9 101 713-836 8-128 (144)
342 smart00028 TPR Tetratricopepti 91.8 0.27 5.8E-06 31.9 3.8 31 514-544 3-33 (34)
343 KOG3807 Predicted membrane pro 91.3 14 0.0003 39.0 16.9 141 599-757 179-324 (556)
344 KOG3824 Huntingtin interacting 91.3 0.63 1.4E-05 48.2 7.2 68 562-647 126-193 (472)
345 PF10602 RPN7: 26S proteasome 91.0 2.3 5.1E-05 41.8 10.9 94 480-575 37-136 (177)
346 PF04053 Coatomer_WDAD: Coatom 90.9 8.2 0.00018 43.9 16.5 127 614-769 271-398 (443)
347 KOG1463 26S proteasome regulat 90.7 26 0.00057 37.4 21.8 265 608-873 8-319 (411)
348 PF13374 TPR_10: Tetratricopep 90.4 0.43 9.4E-06 33.8 3.9 29 713-741 3-31 (42)
349 PRK15180 Vi polysaccharide bio 90.3 2.1 4.5E-05 47.1 10.3 122 491-636 301-423 (831)
350 KOG3783 Uncharacterized conser 90.2 10 0.00023 42.9 15.9 244 496-774 250-521 (546)
351 KOG2422 Uncharacterized conser 90.2 11 0.00024 42.8 16.1 149 725-873 251-451 (665)
352 KOG4814 Uncharacterized conser 90.1 3.3 7.2E-05 47.3 12.0 101 515-633 357-457 (872)
353 TIGR02561 HrpB1_HrpK type III 90.0 9.2 0.0002 35.9 13.0 105 609-739 15-120 (153)
354 KOG3364 Membrane protein invol 89.8 1.3 2.9E-05 40.4 7.1 66 481-546 34-105 (149)
355 COG4976 Predicted methyltransf 89.5 0.72 1.6E-05 46.0 5.6 60 612-671 3-62 (287)
356 COG3914 Spy Predicted O-linked 89.2 6.5 0.00014 44.9 13.5 93 788-880 81-181 (620)
357 PF04053 Coatomer_WDAD: Coatom 88.1 13 0.00027 42.4 15.3 27 603-629 346-372 (443)
358 KOG0529 Protein geranylgeranyl 88.1 29 0.00062 38.2 16.9 137 494-650 90-241 (421)
359 KOG3807 Predicted membrane pro 88.0 28 0.0006 36.9 16.1 128 580-730 194-329 (556)
360 COG4976 Predicted methyltransf 88.0 0.82 1.8E-05 45.6 4.9 59 488-546 4-63 (287)
361 PRK11619 lytic murein transgly 87.9 69 0.0015 38.5 30.1 122 482-635 36-160 (644)
362 KOG1724 SCF ubiquitin ligase, 87.8 2.9 6.3E-05 40.0 8.4 91 189-282 13-127 (162)
363 KOG1538 Uncharacterized conser 87.2 22 0.00048 40.9 15.9 20 74-93 107-126 (1081)
364 COG3914 Spy Predicted O-linked 87.2 23 0.0005 40.6 16.1 131 496-649 48-187 (620)
365 PF11207 DUF2989: Protein of u 87.1 22 0.00047 35.4 14.2 86 774-861 107-198 (203)
366 PF04190 DUF410: Protein of un 87.0 21 0.00046 37.5 15.3 109 395-535 2-113 (260)
367 TIGR02561 HrpB1_HrpK type III 87.0 6.7 0.00015 36.8 10.0 62 594-655 34-95 (153)
368 KOG3840 Uncharaterized conserv 86.8 0.52 1.1E-05 48.3 2.9 85 183-269 97-186 (438)
369 KOG1310 WD40 repeat protein [G 86.3 2.2 4.8E-05 47.6 7.5 85 462-546 391-479 (758)
370 KOG2396 HAT (Half-A-TPR) repea 86.3 6 0.00013 44.2 10.8 81 764-844 91-176 (568)
371 PF12862 Apc5: Anaphase-promot 86.0 3.8 8.3E-05 35.5 7.7 59 488-546 7-75 (94)
372 PF11207 DUF2989: Protein of u 86.0 21 0.00045 35.5 13.4 76 496-574 123-200 (203)
373 KOG1310 WD40 repeat protein [G 85.4 2.2 4.7E-05 47.6 7.0 85 485-575 380-468 (758)
374 KOG2581 26S proteasome regulat 85.3 13 0.00028 40.5 12.4 86 489-574 136-231 (493)
375 COG5159 RPN6 26S proteasome re 85.3 51 0.0011 34.4 21.0 264 608-873 7-317 (421)
376 PF12862 Apc5: Anaphase-promot 85.2 4.4 9.5E-05 35.1 7.7 59 613-671 7-74 (94)
377 PF07721 TPR_4: Tetratricopept 84.8 0.86 1.9E-05 28.8 2.2 23 385-407 3-25 (26)
378 PRK11619 lytic murein transgly 84.6 1E+02 0.0022 37.2 38.7 139 721-867 321-465 (644)
379 COG5201 SKP1 SCF ubiquitin lig 84.4 6.7 0.00015 35.1 8.2 95 183-282 3-122 (158)
380 KOG1839 Uncharacterized protei 84.2 8.7 0.00019 48.0 12.0 167 481-665 934-1126(1236)
381 PRK15180 Vi polysaccharide bio 84.2 77 0.0017 35.5 22.7 118 462-603 306-424 (831)
382 KOG4814 Uncharacterized conser 84.0 33 0.00071 39.7 15.3 91 559-667 361-457 (872)
383 COG2912 Uncharacterized conser 83.6 5.8 0.00013 41.2 8.8 74 555-646 184-257 (269)
384 KOG1839 Uncharacterized protei 83.2 8.8 0.00019 48.0 11.5 145 597-773 966-1128(1236)
385 KOG1463 26S proteasome regulat 82.9 72 0.0016 34.2 23.1 245 382-671 47-320 (411)
386 PF10516 SHNi-TPR: SHNi-TPR; 82.1 1.7 3.7E-05 30.5 3.0 29 384-412 2-30 (38)
387 KOG2422 Uncharacterized conser 82.0 83 0.0018 36.3 17.4 144 474-636 279-451 (665)
388 PF10516 SHNi-TPR: SHNi-TPR; 80.4 2.4 5.3E-05 29.7 3.3 29 713-741 2-30 (38)
389 KOG2581 26S proteasome regulat 78.9 1.1E+02 0.0024 33.8 18.9 140 519-671 133-280 (493)
390 PF07721 TPR_4: Tetratricopept 78.3 2.6 5.6E-05 26.6 2.7 22 640-661 3-24 (26)
391 COG2912 Uncharacterized conser 77.8 8.1 0.00018 40.1 7.6 71 813-883 186-257 (269)
392 PF07720 TPR_3: Tetratricopept 77.6 6.4 0.00014 27.2 4.7 31 639-669 2-34 (36)
393 KOG2396 HAT (Half-A-TPR) repea 77.5 1.4E+02 0.0029 34.1 33.0 80 467-546 93-174 (568)
394 KOG4279 Serine/threonine prote 77.4 7.4 0.00016 45.3 7.7 125 603-760 200-336 (1226)
395 PF10579 Rapsyn_N: Rapsyn N-te 76.6 33 0.00071 28.5 9.1 54 519-575 13-66 (80)
396 COG3629 DnrI DNA-binding trans 75.6 12 0.00025 39.5 8.1 63 604-666 153-215 (280)
397 PF00244 14-3-3: 14-3-3 protei 75.4 64 0.0014 33.4 13.6 63 482-544 4-69 (236)
398 PF10255 Paf67: RNA polymerase 75.0 5.3 0.00011 44.4 5.8 70 416-507 123-192 (404)
399 PF00244 14-3-3: 14-3-3 protei 74.4 95 0.0021 32.1 14.5 156 714-869 3-197 (236)
400 COG4455 ImpE Protein of avirul 73.6 10 0.00022 37.9 6.6 66 818-883 11-77 (273)
401 COG5191 Uncharacterized conser 73.4 5.1 0.00011 41.9 4.7 83 465-547 93-177 (435)
402 PF07720 TPR_3: Tetratricopept 73.4 10 0.00022 26.2 4.8 31 514-544 3-35 (36)
403 COG5191 Uncharacterized conser 72.8 7.6 0.00017 40.7 5.8 87 797-883 96-184 (435)
404 PF10373 EST1_DNA_bind: Est1 D 72.4 13 0.00027 39.5 7.9 61 623-683 1-62 (278)
405 PF10579 Rapsyn_N: Rapsyn N-te 72.1 27 0.00058 29.0 7.6 58 717-774 11-73 (80)
406 COG3629 DnrI DNA-binding trans 71.8 13 0.00029 39.1 7.5 61 481-541 155-216 (280)
407 KOG4014 Uncharacterized conser 71.7 1E+02 0.0023 30.1 14.2 118 601-724 31-156 (248)
408 PF15015 NYD-SP12_N: Spermatog 71.0 18 0.0004 39.5 8.3 51 610-660 234-284 (569)
409 KOG0546 HSP90 co-chaperone CPR 70.6 4.3 9.3E-05 43.4 3.6 77 809-885 276-353 (372)
410 PF11817 Foie-gras_1: Foie gra 70.5 22 0.00049 37.0 9.0 78 693-770 156-244 (247)
411 PF07707 BACK: BTB And C-termi 70.0 4 8.7E-05 35.7 2.9 38 288-325 1-38 (103)
412 KOG2063 Vacuolar assembly/sort 69.3 1.5E+02 0.0032 36.6 16.4 29 606-634 506-534 (877)
413 PF10373 EST1_DNA_bind: Est1 D 67.8 1.1E+02 0.0023 32.2 13.9 61 464-524 1-62 (278)
414 KOG0546 HSP90 co-chaperone CPR 67.7 9.4 0.0002 40.9 5.3 75 556-648 279-353 (372)
415 PF01466 Skp1: Skp1 family, di 66.3 17 0.00038 30.1 5.7 46 250-295 11-58 (78)
416 PF15015 NYD-SP12_N: Spermatog 65.4 70 0.0015 35.3 11.2 55 557-629 233-287 (569)
417 PF04190 DUF410: Protein of un 65.2 1.8E+02 0.004 30.5 21.0 66 602-667 88-170 (260)
418 PF12739 TRAPPC-Trs85: ER-Golg 65.0 1.5E+02 0.0033 33.6 14.9 164 482-667 211-399 (414)
419 KOG1258 mRNA processing protei 64.5 2.8E+02 0.0061 32.3 36.9 140 721-861 264-420 (577)
420 PF08238 Sel1: Sel1 repeat; I 63.4 14 0.0003 25.5 4.0 31 384-414 2-39 (39)
421 COG5159 RPN6 26S proteasome re 63.4 2E+02 0.0043 30.2 23.2 97 643-743 130-237 (421)
422 KOG0686 COP9 signalosome, subu 62.8 82 0.0018 34.7 11.2 77 697-773 132-216 (466)
423 smart00671 SEL1 Sel1-like repe 62.7 12 0.00026 25.2 3.6 29 385-413 3-35 (36)
424 COG3014 Uncharacterized protei 62.6 1.7E+02 0.0037 31.5 13.1 29 712-740 125-153 (449)
425 KOG1920 IkappaB kinase complex 62.0 4.3E+02 0.0093 33.6 21.6 66 697-768 923-989 (1265)
426 COG1747 Uncharacterized N-term 61.6 2.9E+02 0.0064 31.6 21.5 59 613-671 214-292 (711)
427 KOG2114 Vacuolar assembly/sort 60.8 3.8E+02 0.0083 32.6 27.0 85 481-575 370-454 (933)
428 TIGR03504 FimV_Cterm FimV C-te 59.9 16 0.00034 26.6 3.7 25 812-836 3-27 (44)
429 PF11817 Foie-gras_1: Foie gra 59.7 37 0.0008 35.4 8.2 62 513-574 179-240 (247)
430 TIGR03504 FimV_Cterm FimV C-te 59.6 18 0.0004 26.3 4.0 24 483-506 3-26 (44)
431 PF10255 Paf67: RNA polymerase 59.3 65 0.0014 36.0 10.2 68 554-632 124-192 (404)
432 PRK12798 chemotaxis protein; R 59.2 3E+02 0.0064 30.8 21.6 156 724-880 160-336 (421)
433 PF09670 Cas_Cas02710: CRISPR- 58.7 1.8E+02 0.0038 32.6 13.7 60 482-541 134-198 (379)
434 COG4455 ImpE Protein of avirul 58.1 1.3E+02 0.0029 30.4 10.8 60 612-671 9-68 (273)
435 COG3947 Response regulator con 57.8 1.7E+02 0.0037 30.9 12.0 59 714-772 281-341 (361)
436 KOG0687 26S proteasome regulat 56.4 74 0.0016 34.0 9.3 108 695-802 84-209 (393)
437 KOG1778 CREB binding protein/P 56.1 5.9 0.00013 42.4 1.5 130 184-317 29-160 (319)
438 KOG0529 Protein geranylgeranyl 55.6 3.3E+02 0.0072 30.3 15.8 94 590-683 95-195 (421)
439 COG3947 Response regulator con 55.3 39 0.00085 35.4 7.0 60 606-665 281-340 (361)
440 PF12854 PPR_1: PPR repeat 54.8 28 0.00061 23.5 4.2 27 807-833 6-32 (34)
441 PF12739 TRAPPC-Trs85: ER-Golg 54.7 3.6E+02 0.0079 30.5 16.6 34 513-546 209-242 (414)
442 PF11846 DUF3366: Domain of un 54.1 47 0.001 33.0 7.6 53 824-876 127-179 (193)
443 PF09670 Cas_Cas02710: CRISPR- 52.9 2.7E+02 0.0059 31.1 14.0 61 607-667 134-198 (379)
444 PF14863 Alkyl_sulf_dimr: Alky 52.5 71 0.0015 30.0 7.8 54 511-570 69-122 (141)
445 KOG3342 Signal peptidase I [In 50.7 14 0.0003 34.3 2.7 51 148-200 45-101 (180)
446 COG3107 LppC Putative lipoprot 50.1 4.6E+02 0.01 30.3 16.4 172 466-640 49-239 (604)
447 PF05053 Menin: Menin; InterP 49.3 1.6E+02 0.0034 34.1 11.1 81 745-836 258-346 (618)
448 PF12854 PPR_1: PPR repeat 49.0 38 0.00083 22.9 4.1 27 510-536 5-31 (34)
449 KOG4521 Nuclear pore complex, 48.0 5.3E+02 0.012 32.7 15.6 159 603-772 919-1131(1480)
450 smart00386 HAT HAT (Half-A-TPR 47.9 34 0.00073 22.0 3.8 30 855-884 1-30 (33)
451 KOG1497 COP9 signalosome, subu 46.5 4E+02 0.0087 28.6 17.4 114 541-665 91-211 (399)
452 KOG0276 Vesicle coat complex C 46.5 2.1E+02 0.0047 33.3 11.5 99 615-741 597-695 (794)
453 PF13041 PPR_2: PPR repeat fam 45.8 80 0.0017 23.2 5.9 28 639-666 4-31 (50)
454 COG4941 Predicted RNA polymera 45.2 4.3E+02 0.0094 28.6 15.1 188 462-677 213-405 (415)
455 PF13041 PPR_2: PPR repeat fam 45.0 80 0.0017 23.2 5.8 37 480-516 4-42 (50)
456 KOG4521 Nuclear pore complex, 44.6 6.3E+02 0.014 32.1 15.5 177 384-575 921-1125(1480)
457 smart00299 CLH Clathrin heavy 44.0 2.6E+02 0.0057 25.7 13.3 46 490-536 18-64 (140)
458 smart00875 BACK BTB And C-term 43.7 16 0.00035 31.5 2.1 32 289-320 2-33 (101)
459 KOG2715 Uncharacterized conser 43.4 1.2E+02 0.0026 29.0 7.5 89 183-274 22-114 (210)
460 PF01535 PPR: PPR repeat; Int 43.1 33 0.00072 21.8 3.1 26 715-740 3-28 (31)
461 COG1747 Uncharacterized N-term 43.1 5.7E+02 0.012 29.4 21.5 96 511-633 65-160 (711)
462 smart00386 HAT HAT (Half-A-TPR 43.0 57 0.0012 20.9 4.3 28 618-645 1-28 (33)
463 KOG0276 Vesicle coat complex C 42.6 3.7E+02 0.008 31.5 12.6 87 468-575 602-689 (794)
464 PF05053 Menin: Menin; InterP 40.1 1.8E+02 0.0038 33.7 9.7 43 463-505 297-344 (618)
465 cd02682 MIT_AAA_Arch MIT: doma 40.1 1.5E+02 0.0032 24.5 6.9 23 389-411 12-34 (75)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 40.0 3E+02 0.0064 25.2 13.7 80 690-771 41-126 (126)
467 PF04348 LppC: LppC putative l 39.6 9.7 0.00021 44.6 0.0 93 480-575 25-121 (536)
468 KOG4151 Myosin assembly protei 39.5 1.3E+02 0.0028 36.1 8.9 95 791-885 70-171 (748)
469 PRK12798 chemotaxis protein; R 38.7 6.1E+02 0.013 28.5 21.8 163 480-664 148-321 (421)
470 cd02682 MIT_AAA_Arch MIT: doma 38.6 1.5E+02 0.0033 24.4 6.7 19 753-771 15-33 (75)
471 PF10952 DUF2753: Protein of u 37.3 1.4E+02 0.0031 27.1 6.7 57 714-770 3-76 (140)
472 PF10932 DUF2783: Protein of u 36.4 90 0.002 24.3 4.7 52 57-112 5-59 (60)
473 COG3014 Uncharacterized protei 35.9 4.2E+02 0.0091 28.7 11.0 42 370-411 112-153 (449)
474 PF11846 DUF3366: Domain of un 34.5 1E+02 0.0022 30.6 6.4 51 495-545 127-177 (193)
475 TIGR00756 PPR pentatricopeptid 34.5 68 0.0015 20.8 3.7 26 715-740 3-28 (35)
476 PF04212 MIT: MIT (microtubule 34.4 76 0.0016 25.4 4.5 27 385-411 7-33 (69)
477 cd02679 MIT_spastin MIT: domai 34.3 60 0.0013 27.1 3.8 33 618-665 3-35 (79)
478 KOG4279 Serine/threonine prote 34.1 2.2E+02 0.0049 33.9 9.4 55 492-546 256-321 (1226)
479 COG5187 RPN7 26S proteasome re 34.0 6E+02 0.013 27.0 13.0 169 590-758 57-241 (412)
480 PF04097 Nic96: Nup93/Nic96; 33.5 9.1E+02 0.02 29.0 28.8 41 745-802 415-455 (613)
481 cd02683 MIT_1 MIT: domain cont 32.9 2.7E+02 0.006 23.0 7.6 24 388-411 11-34 (77)
482 KOG0687 26S proteasome regulat 32.3 6.8E+02 0.015 27.1 15.4 104 552-670 104-213 (393)
483 cd02681 MIT_calpain7_1 MIT: do 31.7 66 0.0014 26.6 3.6 17 649-665 17-33 (76)
484 cd02680 MIT_calpain7_2 MIT: do 31.1 73 0.0016 26.3 3.8 17 650-666 18-34 (75)
485 PF04097 Nic96: Nup93/Nic96; 30.1 7.6E+02 0.016 29.6 13.8 57 487-546 266-322 (613)
486 KOG1114 Tripeptidyl peptidase 30.0 1.2E+03 0.026 29.2 16.1 64 794-857 1216-1283(1304)
487 PHA03098 kelch-like protein; P 29.6 20 0.00043 42.3 0.4 33 250-282 105-137 (534)
488 PHA02537 M terminase endonucle 29.3 3.7E+02 0.008 27.6 9.3 33 712-744 169-210 (230)
489 cd02679 MIT_spastin MIT: domai 29.0 84 0.0018 26.2 3.8 17 820-836 20-36 (79)
490 cd02681 MIT_calpain7_1 MIT: do 29.0 1E+02 0.0022 25.5 4.3 26 386-411 9-34 (76)
491 KOG2063 Vacuolar assembly/sort 27.8 1.3E+03 0.028 28.9 16.4 21 390-410 353-373 (877)
492 cd02680 MIT_calpain7_2 MIT: do 27.5 90 0.002 25.7 3.7 24 388-411 11-34 (75)
493 PF04840 Vps16_C: Vps16, C-ter 27.1 8.3E+02 0.018 26.5 28.6 97 722-830 187-284 (319)
494 PF14863 Alkyl_sulf_dimr: Alky 26.9 1.9E+02 0.004 27.2 6.3 49 605-653 71-119 (141)
495 PF10938 YfdX: YfdX protein; 26.6 3E+02 0.0065 26.3 7.8 60 481-540 77-145 (155)
496 PF13812 PPR_3: Pentatricopept 25.7 1.3E+02 0.0028 19.4 3.9 27 714-740 3-29 (34)
497 smart00299 CLH Clathrin heavy 25.5 5.3E+02 0.011 23.6 12.5 49 613-662 16-64 (140)
498 COG5536 BET4 Protein prenyltra 25.5 3.4E+02 0.0074 28.6 8.1 85 462-546 91-184 (328)
499 smart00745 MIT Microtubule Int 25.4 1.4E+02 0.0029 24.5 4.6 27 385-411 10-36 (77)
500 KOG0128 RNA-binding protein SA 25.0 1.3E+03 0.029 28.2 31.6 153 462-634 96-261 (881)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-43 Score=374.51 Aligned_cols=446 Identities=17% Similarity=0.140 Sum_probs=385.9
Q ss_pred HhcCCCCCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcch--hHhhHHHHHhhcCCc
Q 002716 354 VAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHK 431 (889)
Q Consensus 354 v~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~la~~~~~~g~~ 431 (889)
...++...+..+-.++++.......+. ....|+.-.++.|+|++|+++-...-..++.. ....+..+++...+.
T Consensus 23 ~~ld~~~~s~~s~~v~qq~~~t~~~~~----~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~ 98 (966)
T KOG4626|consen 23 RKLDQSVSSSGSSSVLQQFNKTHEGSD----DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRL 98 (966)
T ss_pred HHhccCcccccchHHHHHhccCCccch----hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccch
Confidence 445555555544455555444333332 24567788889999999999988776554332 223344444444443
Q ss_pred HHH-------HHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Q 002716 432 LWA-------YEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (889)
Q Consensus 432 ~~A-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~k 504 (889)
+.. +..-....+.+.++|.++.+++.. +.|+..|..+++++|++..+|.++|.++..+|+.+.|.+.|..
T Consensus 99 d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~---~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 99 DKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL---QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH---HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 332 222333445567788999999999 9999999999999999999999999999999999999999999
Q ss_pred HHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccc
Q 002716 505 ILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (889)
Q Consensus 505 al~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~ 583 (889)
+++++| ...+....|.+.-..|...+|...|.++++.+|... .+|..||.+....|+...|+..|
T Consensus 176 alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA------iawsnLg~~f~~~Gei~~aiq~y-------- 241 (966)
T KOG4626|consen 176 ALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA------IAWSNLGCVFNAQGEIWLAIQHY-------- 241 (966)
T ss_pred HHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee------eeehhcchHHhhcchHHHHHHHH--------
Confidence 999999 778888999999999999999999999999999888 79999999999999999998887
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 584 ~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
+++++++|....+|+++|.+|.+.+.++.|+..|.+|+...|+.+.++.++|.+|+.+|..+-|+..|++
T Consensus 242 ----------~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 242 ----------EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred ----------HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc----hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 664 SIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 664 al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~----~~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
+++++|++ +++.++|.++.+.| ...+|..+|.+++. -+++.+|||.+|.++|++++|...|.++
T Consensus 312 al~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a 380 (966)
T KOG4626|consen 312 ALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA 380 (966)
T ss_pred HHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999 99999999999999 99999999999843 3899999999999999999999999999
Q ss_pred HccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c---CCHHHHHHHHHHHHhcCCCChHHHH
Q 002716 739 LKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDRELTRADLEMVTQLDPLRVYPYR 812 (889)
Q Consensus 739 l~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~---~~~~~A~~~l~~al~l~p~~~~~~~ 812 (889)
+...|. .++.+||.+|.++|++++|+..|+.++.+.|..+.++.++|. | |+.+.|+.+|.+|++++|..++++.
T Consensus 381 l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 381 LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 999999 899999999999999999999999999999988888888877 3 8888999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
+||.+|...|+..+||..|+.++.++||.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999985
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-38 Score=338.95 Aligned_cols=373 Identities=18% Similarity=0.153 Sum_probs=264.7
Q ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc--chhHhhHHHHHhhcCCcHHHHHHHhhhhhccC-------cch
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------PLG 449 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~g 449 (889)
.++-+.++-++|+++.++|++++|+.+|+.+++..+ ..++.++|.++..+|+...|.+.+...+...+ ..|
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lg 191 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLG 191 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchh
Confidence 456677899999999999999999999999999764 46788888888888887777766666655443 356
Q ss_pred hHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccH
Q 002716 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDY 528 (889)
Q Consensus 450 ~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~ 528 (889)
.+..+.|.. .+|...|.+|++.+|..+-+|..+|.++..+|+...||..|++++.++| .++++..+|.+|-..+.|
T Consensus 192 nLlka~Grl---~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRL---EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhccc---chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 666666666 7777777777777777777777777777777777777777777777777 677777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHH
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
++|+..|.+++.+.|++. .++-++|.+|..+|..+-|+..+ +++++.+|..+.++.
T Consensus 269 d~Avs~Y~rAl~lrpn~A------~a~gNla~iYyeqG~ldlAI~~Y------------------kral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHA------VAHGNLACIYYEQGLLDLAIDTY------------------KRALELQPNFPDAYN 324 (966)
T ss_pred hHHHHHHHHHHhcCCcch------hhccceEEEEeccccHHHHHHHH------------------HHHHhcCCCchHHHh
Confidence 777777777777777777 55556667777777777775555 777777777777777
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~ 687 (889)
++|.++...|+..+|..+|.+++...|+.+++++++|.++.++|.+++|...|++++...|++ .++.++|.+|.++|
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg-- 402 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG-- 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--
Confidence 777777777777777777777777777777777777777777777777777777777777777 66666666666665
Q ss_pred CCcchhhhhhHHHHhcchhhhCc--h--hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLR--K--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~--~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~ 761 (889)
.+++|+.+|+.+++ + ++++.|+|.+|-.+|+.+.|+++|.+|+.++|. +++.+||.+|...|+.
T Consensus 403 ---------nl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni- 472 (966)
T KOG4626|consen 403 ---------NLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI- 472 (966)
T ss_pred ---------cHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc-
Confidence 55556555555522 2 555566666666666666666666666666655 5555566665555555
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002716 762 TAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLM 819 (889)
Q Consensus 762 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~ 819 (889)
.+|+..|+.+++++|+.+.++-+++.++.
T Consensus 473 -----------------------------~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 473 -----------------------------PEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred -----------------------------HHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 66666666667777777777777766554
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-34 Score=361.56 Aligned_cols=480 Identities=15% Similarity=0.103 Sum_probs=384.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc--chhHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 363 ~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
+.+...++++++..++. ..++..+|.++...|++++|++.|++++...+ ......++..+...|+.+.|.+.+..
T Consensus 380 ~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 380 EKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44455555555544332 23455666666666666666666666665432 22334455566666666666666665
Q ss_pred hhhccCc-------chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CH
Q 002716 441 VISSVTP-------LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-AL 512 (889)
Q Consensus 441 ~~~~~~~-------~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~ 512 (889)
++...+. .|.++...+.+ ++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++...| +.
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDL---AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCH---HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 5544332 34445555555 6677777777777777777777777777777777777777777776666 66
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
.++..++.++...|++++|+..+++++..+|.+. ..+..++.++...|++++|...+
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~----------------- 590 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI------EPALALAQYYLGKGQLKKALAIL----------------- 590 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHCCCHHHHHHHH-----------------
Confidence 6666667777677777777777777777666666 55666667777777777775555
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
+++++..|.++..+..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 591 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 669 (899)
T TIGR02917 591 -NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNT 669 (899)
T ss_pred -HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Confidence 888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hH
Q 002716 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RA 746 (889)
Q Consensus 672 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a 746 (889)
.++..++.++...| .+++|...+... +.....+..+|.++...|++++|+..|++++...|+ ..
T Consensus 670 ~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 738 (899)
T TIGR02917 670 EAQIGLAQLLLAAK-----------RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQN 738 (899)
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchH
Confidence 99999999999998 888888888776 233778899999999999999999999999999988 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCC
Q 002716 747 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSH 822 (889)
Q Consensus 747 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g 822 (889)
+..++.++...|++++|...++++++..|++..++..++.. |+.++|+..|+++++..|+++.++..+|.++...|
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999888887773 89999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 823 KENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 823 ~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
+ .+|+..+++++...|++ ..+..++.++...|++++|++.|+++++.+|.++++...+..+
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 9 88999999999999986 4555888889999999999999999999999999988766654
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-34 Score=358.67 Aligned_cols=478 Identities=18% Similarity=0.184 Sum_probs=322.3
Q ss_pred CCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcc--hhHhhHHHHHhhcCCcHHHHHH
Q 002716 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEK 437 (889)
Q Consensus 360 ~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~A~~~ 437 (889)
...+.++..++++++..++.+ .+++.+|.+++..|+|++|+..|+++++.++. .....+++++...|+++.|+..
T Consensus 36 ~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~ 112 (899)
T TIGR02917 36 NKYKAAIIQLKNALQKDPNDA---EARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDE 112 (899)
T ss_pred CChHhHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHh
Confidence 345677888888888777754 48899999999999999999999999987543 3466789999999999999988
Q ss_pred Hhhhhhc--------cCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC
Q 002716 438 LNSVISS--------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (889)
Q Consensus 438 ~~~~~~~--------~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~ 509 (889)
+...... +...|..+...+.+ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 189 (899)
T TIGR02917 113 LPGKTLLDDEGAAELLALRGLAYLGLGQL---ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189 (899)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8765421 22367778888888 999999999999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccc
Q 002716 510 L-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 588 (889)
Q Consensus 510 p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~ 588 (889)
| +..++..+|.++...|++++|+..|++++..+|++. .++..++.++...|++++|...+
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~------~~~~~~~~~~~~~g~~~~A~~~~------------- 250 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP------AVLLALATILIEAGEFEEAEKHA------------- 250 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH-------------
Confidence 9 889999999999999999999999999999999998 78888999999999999997777
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 589 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
.++++..|.++..++..|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..
T Consensus 251 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 251 -----DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred -----HHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC----chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 669 RSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 669 p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~----~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
|++ .++..++.++...| .+++|+..+.... .....+..+|.++...|++++|..+|+++++..|
T Consensus 326 p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLG-----------RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred CCChHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 554 44444555555544 4444444443331 1133444455555555555555555555554444
Q ss_pred c--hHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------HHHhccCHHHHHHHHhc
Q 002716 744 T--RAHQGLARVHFLKNNKTTAYEEMTKL----------------------------------IKKARNNASAYEKRSEY 787 (889)
Q Consensus 744 ~--~a~~~La~~~~~~g~~~~A~~~~~~a----------------------------------l~~~~~~~~~~~~~~~~ 787 (889)
+ .++..+|.++...|++++|+..++++ +...|+++..+..++..
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4 44444444455555555555544444 44444444444443331
Q ss_pred ----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 002716 788 ----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALR 862 (889)
Q Consensus 788 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~ 862 (889)
|++++|...|+++++.+|.+..++..+|.++...|++++|+..+++++...|+. ..+..++.++...|++++|+.
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 555556666666665555555555556666666666666666666655555553 333344555555566666666
Q ss_pred HHHHHHccCCCCHHHH
Q 002716 863 DCRAALSVDPNDQEML 878 (889)
Q Consensus 863 ~~~~al~l~P~~~~~l 878 (889)
.++++++.+|.+....
T Consensus 555 ~~~~~~~~~~~~~~~~ 570 (899)
T TIGR02917 555 WLEKAAELNPQEIEPA 570 (899)
T ss_pred HHHHHHHhCccchhHH
Confidence 6666666555555443
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=9.5e-33 Score=349.31 Aligned_cols=474 Identities=16% Similarity=0.041 Sum_probs=358.1
Q ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchh------------------HhhHHH
Q 002716 362 SDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS------------------IAGLAR 423 (889)
Q Consensus 362 ~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~------------------~~~la~ 423 (889)
.+.+...|++++...+++++ ++..++.+++..|++++|.+.++++++..+... ...+|+
T Consensus 44 ~d~a~~~l~kl~~~~p~~p~---~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 44 EDLVRQSLYRLELIDPNNPD---VIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred hHHHHHHHHHHHccCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 35667889999999888754 677889999999999999999999988654321 244577
Q ss_pred HHhhcCCcHHHHHHHhhhhhccCcchh---HHHHH-h-hcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHH
Q 002716 424 LGYIKGHKLWAYEKLNSVISSVTPLGW---MYQER-S-LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (889)
Q Consensus 424 ~~~~~g~~~~A~~~~~~~~~~~~~~g~---~~~~~-~-~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~A 498 (889)
++...|++++|.+.+..++...++... .|... . .-+..++|+..|+++++.+|+++.++..+|.++...|++++|
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888999999999999999987665432 22221 0 112338999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC-C----------------------------------HH--------------------HHHHHHHHHH
Q 002716 499 LAEINRILGFKL-A----------------------------------LE--------------------CLELRFCFFL 523 (889)
Q Consensus 499 l~~l~kal~~~p-~----------------------------------~~--------------------~l~~~a~~~~ 523 (889)
++.+++++...+ . .. ....+|..+.
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~ 280 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAV 280 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 999998865332 0 00 0013377888
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
..|++++|+..|+++++.+|++. .++..+|.++...|++++|+..+ +++++.+|++
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~------~a~~~Lg~~~~~~g~~~eA~~~l------------------~~Al~~~p~~ 336 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDS------EALGALGQAYSQQGDRARAVAQF------------------EKALALDPHS 336 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCc
Confidence 89999999999999999999998 89999999999999999998777 9999999876
Q ss_pred hH--------------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 604 GV--------------LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 604 ~~--------------~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
.. ....+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++|
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 53 2235688899999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc-------------hhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 670 SF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR-------------KGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 670 ~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~-------------~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
++ .++..++.++... ..++|+..+..... ....+..+|.++...|++++|+..|
T Consensus 417 ~~~~a~~~L~~l~~~~------------~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 417 GNTNAVRGLANLYRQQ------------SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred CCHHHHHHHHHHHHhc------------CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99 8888888887543 23444433332210 0234556777777777788888888
Q ss_pred HHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc--------------------------
Q 002716 736 SNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-------------------------- 787 (889)
Q Consensus 736 ~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------------------------- 787 (889)
+++++.+|+ .+++.+|.+|...|++++|+..++++++..|.++..+...+.+
T Consensus 485 ~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 485 RQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 877777777 6667777777777777777777777777777555433322211
Q ss_pred ----------------------------------------------------CCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 788 ----------------------------------------------------CDRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 788 ----------------------------------------------------~~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
|++++|+..|+++++.+|+++.++..+|
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la 644 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLI 644 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5666666666666666666666666666
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 816 AVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 816 ~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
.++...|++++|++.++++++..|+.. ....++.++..+|++++|++.|++++...|++
T Consensus 645 ~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 645 EVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 666666666666666666666666542 22345556666666666666666666665544
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.8e-31 Score=337.69 Aligned_cols=473 Identities=15% Similarity=0.025 Sum_probs=379.3
Q ss_pred CCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHH--hhcCC-------
Q 002716 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLG--YIKGH------- 430 (889)
Q Consensus 360 ~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~--~~~g~------- 430 (889)
...+.++..++++++..|++. .++..+|.+++..|++++|+..|++++............... ...+.
T Consensus 161 g~~~~A~~~L~~ll~~~P~~~---~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 161 AQRPEAINQLQRLNADYPGNT---GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred ccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 345678888999888877754 467899999999999999999999987643211110000000 00011
Q ss_pred -------------cHHHHHHHhhhhhcc-------CcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 002716 431 -------------KLWAYEKLNSVISSV-------TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (889)
Q Consensus 431 -------------~~~A~~~~~~~~~~~-------~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~ 490 (889)
...|...+....... ...|..+...+.+ ++|+..|+++++.+|+++.++..+|.++.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~---~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQG---GKAIPELQQAVRANPKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112222222211110 1236667777777 99999999999999999999999999999
Q ss_pred hccCHHHHHHHHHHHHcCCC-CHH--------------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 002716 491 TKQNVEAALAEINRILGFKL-ALE--------------CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (889)
Q Consensus 491 ~~g~~~~Al~~l~kal~~~p-~~~--------------~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 555 (889)
..|++++|+..|+++++.+| +.. ....+|.++...|++++|+..|++++..+|++. .++
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~------~a~ 388 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS------YAV 388 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHH
Confidence 99999999999999999988 321 123457788899999999999999999999998 788
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHH--------------------------
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR-------------------------- 609 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~-------------------------- 609 (889)
..+|.++...|++++|+.++ +++++.+|.+..++..
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y------------------~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYY------------------QQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 89999999999999998888 6666666666555443
Q ss_pred ----------------HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-H
Q 002716 610 ----------------QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-E 672 (889)
Q Consensus 610 ----------------la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 672 (889)
+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|++ .
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 44556678999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--------------hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 673 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------------GQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 673 a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--------------~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
+++.++..+...+ ..++|+..+...... ......++..+...|++++|+..++
T Consensus 531 ~~~a~al~l~~~~-----------~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-- 597 (1157)
T PRK11447 531 QVYAYGLYLSGSD-----------RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-- 597 (1157)
T ss_pred HHHHHHHHHHhCC-----------CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 8888888887777 777777776654211 1234567889999999999999887
Q ss_pred HccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHH
Q 002716 739 LKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYR 812 (889)
Q Consensus 739 l~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~ 812 (889)
..|. ..+..+|.++...|++++|+..|+++++..|++..++..++.. |++++|+..++++++..|+++.++.
T Consensus 598 --~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 598 --QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred --hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 3555 7888999999999999999999999999999999988888773 9999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHc---cCCCCHHH
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADL-------HLLHLRAAFHEHTGDVLGALRDCRAALS---VDPNDQEM 877 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~l~l~a~~~~~~g~~~~A~~~~~~al~---l~P~~~~~ 877 (889)
.+|.++...|++++|+..|++++...|+. ..+...+.++...|++++|+..|++|+. +.|..+..
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 99999999999999999999999876542 1333568889999999999999999995 43444443
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5.5e-30 Score=305.05 Aligned_cols=426 Identities=14% Similarity=0.072 Sum_probs=252.7
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCCh
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (889)
.+..+..+|..++..|+|++|+..|++++...+... .+.++|.+|...+.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~--------------------------~~~n~a~~~~~l~~~--- 176 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV--------------------------YYSNRAACHNALGDW--- 176 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH--------------------------HHHHHHHHHHHhCCH---
Confidence 355688999999999999999999999998754211 012345667777777
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
++|+.+++++++++|++..+|+.+|.+|...|++++|+..|.++...++ +.........-.. ...+...+..++.
T Consensus 177 ~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~a~~~~~~~l~ 252 (615)
T TIGR00990 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL----KKFAESKAKEILE 252 (615)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988877766 3222111111111 1345555666677
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH---h
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR---L 617 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~---~ 617 (889)
..|.+. ..+..++..+... ....+ ...+....+.+|.....+..++..+.. .
T Consensus 253 ~~~~~~------~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~ 307 (615)
T TIGR00990 253 TKPENL------PSVTFVGNYLQSF-RPKPR------------------PAGLEDSNELDEETGNGQLQLGLKSPESKAD 307 (615)
T ss_pred cCCCCC------CCHHHHHHHHHHc-cCCcc------------------hhhhhcccccccccccchHHHHHHHHHhhhh
Confidence 777665 2333333322111 11111 001122233333333333333333222 2
Q ss_pred CCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchh
Q 002716 618 NCPEAAMRSLQLARQH---AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSST 693 (889)
Q Consensus 618 g~~~~A~~~l~~al~~---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~ 693 (889)
+++++|+..|+++++. .|....++..+|.++...|++++|+..|++++.++|++ .++..+|.++...|
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g-------- 379 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG-------- 379 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--------
Confidence 4455555555555543 24444455555555555555555555555555555555 45555555555555
Q ss_pred hhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHH
Q 002716 694 VVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEM 767 (889)
Q Consensus 694 ~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~ 767 (889)
.+++|+..+.+. +....+++.+|.++...|++++|+.+|+++++++|+ .++..+|.++..+|++++|+..+
T Consensus 380 ---~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 380 ---DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444443 112456666666666666666666666666666665 55566666666666666666666
Q ss_pred HHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHH------HHHHHH-HHHhCCCHHHHHHHHHHHHh
Q 002716 768 TKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYP------YRYRAA-VLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 768 ~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~------~~~la~-~~~~~g~~~eA~~~l~kal~ 836 (889)
++++...|+++.++..++.. |++++|+..|+++++++|..... +...+. .+...|++++|+..+++++.
T Consensus 457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66666666666555555542 56666666666666666643222 112222 22334666666666666666
Q ss_pred cCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002716 837 FKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 837 ~~p~~~~-l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~ 876 (889)
.+|+... +..++.++.++|++++|++.|++++++.+...+
T Consensus 537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 6666533 335566666666666666666666666665444
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=2.5e-27 Score=286.78 Aligned_cols=497 Identities=12% Similarity=-0.014 Sum_probs=366.7
Q ss_pred CCCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhh--HHHHHhhcCCcHHHHH
Q 002716 359 DPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAG--LARLGYIKGHKLWAYE 436 (889)
Q Consensus 359 ~~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~--la~~~~~~g~~~~A~~ 436 (889)
.+....++..++++++..|++ ..+++.|+.+|+..|++++|+.+++++++.++...... ++.+ ++++.|.+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n---~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN---IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHH
Confidence 345567788888888888887 34668888889999999999999999988766443332 3333 77888888
Q ss_pred HHhhhhhccCcchhHHHHHhh---------cCChhHHHHHHH-HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 437 KLNSVISSVTPLGWMYQERSL---------YCEGDKRWEDLD-KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 437 ~~~~~~~~~~~~g~~~~~~~~---------~~~~~~A~~~~~-~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
.+++++...+..-.++..... |...++|...++ +.+..+|......+.++.+|..+|+|++|+..+.+.+
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888888877754443322221 222244444444 2233333344456666888888888888888888888
Q ss_pred cCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhh----
Q 002716 507 GFKL-ALECLELRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR---- 580 (889)
Q Consensus 507 ~~~p-~~~~l~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~---- 580 (889)
+..| +...+..++.+|.. +++ ++|+..++..++ +++ .+...++..+...|+.++|..+++.+..
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~------~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDP------QSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCH------HHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 8888 77777777777777 466 777777554333 334 5666777888888888888776642111
Q ss_pred -------------cccc------------------------------------------cc------------------c
Q 002716 581 -------------WSSV------------------------------------------DD------------------I 587 (889)
Q Consensus 581 -------------~~~~------------------------------------------dd------------------~ 587 (889)
.+.. +. .
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 0000 00 0
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------------------
Q 002716 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ----------------------------------- 632 (889)
Q Consensus 588 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~----------------------------------- 632 (889)
.+...+....+..|.+.......+......|+.++|.+.|+++..
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 012222333333466666666666666666766666666554433
Q ss_pred ------------------------------cCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 002716 633 ------------------------------HAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (889)
Q Consensus 633 ------------------------------~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~ 680 (889)
..|. ++.+++.+|.++.. |+.++|+..+.+++...|+......++.+
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~a 518 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQ 518 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 2344 66777888888876 78888888888888888877556666777
Q ss_pred HHHcCCCCCcchhhhhhHHHHhcchhhhCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHH
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLR---KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHF 755 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~---~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~ 755 (889)
+...| ++++|+..+++... ....+..+|.++...|++++|+.+|+++++..|. ..+..++....
T Consensus 519 l~~~G-----------r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 519 AYQVE-----------DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHCC-----------CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 77777 88889888887632 2456788999999999999999999999999887 44555666666
Q ss_pred HcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHH
Q 002716 756 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 831 (889)
Q Consensus 756 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 831 (889)
..|++++|+..++++++..|+ +.++..++.. |+.++|+..|++++.++|+++.++.++|.++...|++++|+..|
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 779999999999999999996 7788777763 89999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 832 SRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 832 ~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
+++++..|++ ..+..++.++..+|++++|+..|+++++++|++..+...+..+.
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 9999999987 55558999999999999999999999999999988887766543
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=5.2e-28 Score=288.10 Aligned_cols=410 Identities=13% Similarity=0.027 Sum_probs=323.0
Q ss_pred CCchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcc--hhHhhHHHHHhhcCCcHHHHHH
Q 002716 360 PRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEK 437 (889)
Q Consensus 360 ~~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~--~~~~~la~~~~~~g~~~~A~~~ 437 (889)
...+.++..++++++..+++ ..+.++|.+|+..|+|++|++.+++|++.++. .++..+|.++...|+++.|+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567888888888877753 36889999999999999999999999997654 4677899999999999999988
Q ss_pred HhhhhhccCcch---hHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHH
Q 002716 438 LNSVISSVTPLG---WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALE 513 (889)
Q Consensus 438 ~~~~~~~~~~~g---~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~ 513 (889)
+..+........ .....+... ..+......+++.+|.+...+..++..+. ......+...+......++ ...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~---~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhhhccccccccccc
Confidence 765543322111 111122222 45666777888889988888887777553 2233334444555555555 333
Q ss_pred HHHHHHHHH---HhcccHHHHHHHHHHHHHhC---CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccccc
Q 002716 514 CLELRFCFF---LALEDYQAALCDVQAILTLS---PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (889)
Q Consensus 514 ~l~~~a~~~---~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~ 587 (889)
.+..+|..+ ...++|++|+..|++++..+ |+.. .++..+|.++...|++++|+..+
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a------~a~~~lg~~~~~~g~~~eA~~~~------------ 354 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA------IALNLRGTFKCLKGKHLEALADL------------ 354 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH------HHHHHHHHHHHHcCCHHHHHHHH------------
Confidence 334444333 34578999999999999875 4444 68889999999999999997777
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 588 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
+++++.+|.....+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.+
T Consensus 355 ------~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 355 ------SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred ------HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--h
Q 002716 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 745 (889)
Q Consensus 668 ~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~ 745 (889)
+|++. .++.++|.++...|++++|+..|+++++..|. .
T Consensus 429 ~P~~~----------------------------------------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 429 DPDFI----------------------------------------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred CccCH----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 88862 24566777777788888888888888888877 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHH------H--HHh---cCCHHHHHHHHHHHHhcCCCChHHHHHH
Q 002716 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE------K--RSE---YCDRELTRADLEMVTQLDPLRVYPYRYR 814 (889)
Q Consensus 746 a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~--~~~---~~~~~~A~~~l~~al~l~p~~~~~~~~l 814 (889)
++..+|.++...|++++|++.|+++++..|.....+. . ... .+++++|...++++++++|++..++..+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7778888888888888888888888888775322111 1 111 2788999999999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 815 AAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 815 a~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
|.++.+.|++++|+..|++++++.+..
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 999999999999999999999998875
No 10
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.3e-27 Score=262.93 Aligned_cols=374 Identities=14% Similarity=0.006 Sum_probs=283.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc---chhHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 364 ~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
.+...+..+++.++++ ..++..-+++.+.+|+|..|+.+|++++...+ .....|++.+.++.|....|...+..
T Consensus 148 ~A~a~F~~Vl~~sp~N---il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDN---ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHhhCCcc---hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 4445556666666655 45667777888899999999999999988653 34467788889999999999999998
Q ss_pred hhhccCcchhHHHHHhhc-------CChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---
Q 002716 441 VISSVTPLGWMYQERSLY-------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--- 510 (889)
Q Consensus 441 ~~~~~~~~g~~~~~~~~~-------~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--- 510 (889)
++...+....++...+.+ ...+.++..+.++-+.+|.+|.+...++..++..|+|..+......++....
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 888777544443333322 1127788999999999999999999999999999999999999999887663
Q ss_pred -CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch
Q 002716 511 -ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 511 -~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
..+.++.+|..|..+|+|++|..+|.++++.+|++. +-.++.+|.+|...|+++.|...|
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~-----~l~~~GlgQm~i~~~dle~s~~~f-------------- 365 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF-----VLPLVGLGQMYIKRGDLEESKFCF-------------- 365 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc-----cccccchhHHHHHhchHHHHHHHH--------------
Confidence 567789999999999999999999999999999982 157788999999999999998888
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhC----CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 590 l~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
++.++..|++......+|.+|...+ ..+.|..++.++++..|.+.++|..+|.++... +.-.++..|.+|+
T Consensus 366 ----Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 366 ----EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNAL 440 (1018)
T ss_pred ----HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 8888899999999999998888875 567888888889888899999999998888754 4444588888887
Q ss_pred hc-----CC-ChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--------------hHHHHHHHHHHHHc
Q 002716 666 QM-----KR-SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------------GQALNNLGSVYVDC 725 (889)
Q Consensus 666 ~~-----~p-~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--------------~~~~~~Lg~~y~~~ 725 (889)
.+ .+ ..+...++|..+...| .++.|...+..+... ...-+|++.++...
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g-----------~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLG-----------NIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhc-----------ChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 43 11 1167777888877777 444444444443111 12466777777777
Q ss_pred CChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 726 GQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 726 g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
++++.|.+.|...++..|. .++..+|......++..+|...+..++..+.
T Consensus 510 ~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 7777777777777777766 5555565544555555555555555555444
No 11
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7e-27 Score=263.51 Aligned_cols=474 Identities=16% Similarity=0.119 Sum_probs=392.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcc---cHHHHHHHHHHHHHcC--cchhHhhHHHHHhhcCCcHHHHHH
Q 002716 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEK 437 (889)
Q Consensus 363 ~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g---~~~eA~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~ 437 (889)
..+....+++++..|.. +.++..||.+-+... .|..|...+.+|...+ ++....-||.-++.+|++..+...
T Consensus 216 ~~a~~a~~ralqLdp~~---v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTC---VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred hhHHHHHHHHHhcChhh---HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 44556677888877744 446666776666444 4778888888887764 445567789999999999988877
Q ss_pred Hhhhhhc----------cCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 438 LNSVISS----------VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 438 ~~~~~~~----------~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~-~~a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
...++.. +-.+|.+|..+|.| ++|..+|.++++.+|++ ..+++.+|..++..|+++.|+..|++++
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~---ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDF---EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 6655532 33478889999999 99999999999999998 8899999999999999999999999999
Q ss_pred cCCC-CHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhc
Q 002716 507 GFKL-ALECLELRFCFFLALE----DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (889)
Q Consensus 507 ~~~p-~~~~l~~~a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~ 581 (889)
...| +.+.+..+|.+|...+ ..+.|.....+++...|.+. ++|..++.++.....|.. +..+
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~------~a~l~laql~e~~d~~~s-L~~~------ 436 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS------EAWLELAQLLEQTDPWAS-LDAY------ 436 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHhcChHHH-HHHH------
Confidence 9999 8999999999998775 67889999999999999998 899999998887766655 5555
Q ss_pred ccccccchHHHHHHHHh-----cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-----CCCc-----HHHHHHHHH
Q 002716 582 SSVDDIGSLSVIYQMLE-----SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASD-----HERLVYEGW 646 (889)
Q Consensus 582 ~~~dd~~sl~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~-----~~~~~~lg~ 646 (889)
..++. ..+--++.+.++|..++..|++..|...|..|+.. +++. ....|++|.
T Consensus 437 ------------~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 437 ------------GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred ------------HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 44442 23455788999999999999999999999999876 2222 235899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHHHHHHHH
Q 002716 647 ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSV 721 (889)
Q Consensus 647 ~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~ 721 (889)
++...++++.|.+.|..+++..|++ .++..++....+.+ ...+|...+..+++- +.++..+|..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~-----------~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKN-----------NLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhcc-----------CcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 9999999999999999999999999 99999986655666 666777777766332 7899999999
Q ss_pred HHHcCChHHHHHHHHHHHccC---cc-hHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHhccCHHHHHHHH
Q 002716 722 YVDCGQLDLAADCYSNALKIR---HT-RAHQGLARVHFL------------KNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (889)
Q Consensus 722 y~~~g~~~~A~~~~~~al~~~---p~-~a~~~La~~~~~------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 785 (889)
|....++..|..-|+..++.- ++ .+...||.+++. .+.+++|++.|.+++..+|.|.++.++.|
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 999999999999777766543 33 788889987764 46688999999999999999999888877
Q ss_pred hc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHH
Q 002716 786 EY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA---DLHLLHLRAAFHEHTGDVL 858 (889)
Q Consensus 786 ~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p---~~~~l~l~a~~~~~~g~~~ 858 (889)
.. |++.+|+..|.++.+--.++..+|.++|.+|..+|+|..|++.|+.++...- +..+++.++.++...|++.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 73 8999999999999998888899999999999999999999999999987543 4588888888887779999
Q ss_pred HHHHHHHHHHccCCCCHHHH
Q 002716 859 GALRDCRAALSVDPNDQEML 878 (889)
Q Consensus 859 ~A~~~~~~al~l~P~~~~~l 878 (889)
+|.+...+|+.+.|.++.+.
T Consensus 734 eak~~ll~a~~~~p~~~~v~ 753 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHHHhCCccchHH
Confidence 99999999999999998765
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.8e-26 Score=274.92 Aligned_cols=492 Identities=13% Similarity=0.000 Sum_probs=355.8
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHcCc--chhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCC
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (889)
...++..|..+..+|++++|+..|+++++..+ ......+++++...|+.++|...+.+.+...+...+.+........
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~ 123 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPV 123 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhcc
Confidence 45677788888899999999999999998754 4567889999999999999999999999998877776665555555
Q ss_pred hhHHHHHHHHhhhcCCCChhhHHHHHHH--------HHhccCHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHhcccHHHH
Q 002716 461 GDKRWEDLDKATALDPTLSYPYMYRASS--------LMTKQNVEAALAEINRILGFKLALECLEL-RFCFFLALEDYQAA 531 (889)
Q Consensus 461 ~~~A~~~~~~al~~dp~~~~a~~~la~~--------~~~~g~~~~Al~~l~kal~~~p~~~~l~~-~a~~~~~~g~~~~A 531 (889)
.++|+..|+++++.+|++..+++.++.. |.+.++..+|+. .+.+..+|.+..+.+ ++.+|..+|++++|
T Consensus 124 ~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 124 EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 5999999999999999999999999998 777777777776 555555554554444 49999999999999
Q ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHH-hhchhHHHHHHHhhhh------------cccccccc-hH---HHHH
Q 002716 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDR------------WSSVDDIG-SL---SVIY 594 (889)
Q Consensus 532 ~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~l~~~------------~~~~dd~~-sl---~~~~ 594 (889)
+..++++++..|.+. .....++.+|.. +++ +++..+++...+ +...++.. .. ..+.
T Consensus 202 i~lL~~L~k~~pl~~------~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 202 DTLYNEARQQNTLSA------AERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHhcCCCCH------HHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 999999999999998 677788888887 466 666555421000 00011100 00 0111
Q ss_pred HHHhcCCCChHHHH-----------------------------HHHHHHHHhCCHH------------------------
Q 002716 595 QMLESDAPKGVLYF-----------------------------RQSLLLLRLNCPE------------------------ 621 (889)
Q Consensus 595 ~al~~~p~~~~~~~-----------------------------~la~~~~~~g~~~------------------------ 621 (889)
.....+|.+...++ .+...+...++++
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccc
Confidence 11111122222222 1233334444444
Q ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCCCCcc-
Q 002716 622 -----AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EAFFLKAYALADSSQDSSCS- 691 (889)
Q Consensus 622 -----~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~a~~~la~~~~~~~~~~~~~- 691 (889)
+|....+...+..|.+..++...+....+.|+.++|...+++++...++- .....++.++.....-....
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 33333444455568888899999999999999999999999998763332 12335565555543200000
Q ss_pred -------------hhhh--------------------------------------hhHHHHhcchhhhCch---hHHHHH
Q 002716 692 -------------STVV--------------------------------------SLLEDALKCPSDRLRK---GQALNN 717 (889)
Q Consensus 692 -------------~~~~--------------------------------------~~~~~Al~~~~~~~~~---~~~~~~ 717 (889)
.... ...++|+..+.+.... ......
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~ 514 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRA 514 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHH
Confidence 0000 0122344433333111 222334
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c---CCHHH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDREL 792 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~---~~~~~ 792 (889)
+|.++...|++++|+..|+++....|. ..+..+|.++...|++++|...++++++..|.....+...+. . |++++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHH
Confidence 455556788888888888888776555 667788888899999999999999999988877766655443 4 99999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 793 TRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 793 A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
|+..|+++++++|+ ..++..+|.++.+.|++++|+..|++++..+|+.. ....++.++...|++++|+..|+++++++
T Consensus 595 Al~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 595 ALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999996 99999999999999999999999999999999974 44588888888999999999999999999
Q ss_pred CCCHHHHHHHHhh
Q 002716 872 PNDQEMLELHSRV 884 (889)
Q Consensus 872 P~~~~~l~l~~~~ 884 (889)
|++++++..++.+
T Consensus 674 P~~~~a~~nLA~a 686 (987)
T PRK09782 674 PDDPALIRQLAYV 686 (987)
T ss_pred CCCHHHHHHHHHH
Confidence 9999887665544
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=2.1e-25 Score=264.96 Aligned_cols=334 Identities=14% Similarity=0.055 Sum_probs=247.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
++|+..+..++...|+.+.+++.+|.+....|++++|+..+++++..+| ++.++..+|.++...|++++|+..|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777788888888888888888888888888888888888888 777888888888888888888888888888
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
++|++. .++..++.++...|++++|...+ .+++...|+++.++..++ .+...|++
T Consensus 139 l~P~~~------~a~~~la~~l~~~g~~~eA~~~~------------------~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNS------QIFALHLRTLVLMDKELQAISLA------------------RTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcH------HHHHHHHHHHHHCCChHHHHHHH------------------HHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 888877 67777888888888888886555 777777787777776654 36777888
Q ss_pred HHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHH
Q 002716 621 EAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 699 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~ 699 (889)
++|+..++++++..|. .......++.++...|++++|+..|++++..+|++.
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~--------------------------- 246 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGA--------------------------- 246 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------------------
Confidence 8888888887777653 333445567777788888888888888887777651
Q ss_pred HHhcchhhhCchhHHHHHHHHHHHHcCChHH----HHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002716 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDL----AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 700 ~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~----A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
.++.++|.++...|++++ |+..|+++++.+|+ .++..+|.++...|++++|+..++++++.
T Consensus 247 -------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 247 -------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred -------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 244455555555666653 67777777777776 66677777777777777777777777777
Q ss_pred hccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002716 774 ARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAA 849 (889)
Q Consensus 774 ~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~ 849 (889)
.|+++.++..++.. |++++|+..|++++..+|++...+..+|.++...|++++|+..|+++++..|+..
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------- 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------- 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-------
Confidence 77666655555442 6777888888888888888777777778888888889999998888888888752
Q ss_pred HHHHcCCHHHHHHHHHHHHccC
Q 002716 850 FHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 850 ~~~~~g~~~~A~~~~~~al~l~ 871 (889)
..++++|+..|.++++.-
T Consensus 387 ----~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 387 ----PQSFEEGLLALDGQISAV 404 (656)
T ss_pred ----hhhHHHHHHHHHHHHHhc
Confidence 145556666666666544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=7.9e-26 Score=268.58 Aligned_cols=332 Identities=12% Similarity=-0.002 Sum_probs=294.5
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 557 (889)
.......+......|++++|+..++.++...| +.++++.+|.+....|++++|+..|++++..+|++. .++..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~------~a~~~ 115 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP------EDVLL 115 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh------HHHHH
Confidence 33455567778899999999999999999999 899999999999999999999999999999999998 88999
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 637 (889)
+|.++...|++++|+..+ +++++.+|+++.++..+|.++...|++++|+..+++++...|++
T Consensus 116 la~~l~~~g~~~~Ai~~l------------------~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 116 VASVLLKSKQYATVADLA------------------EQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred HHHHHHHcCCHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC
Confidence 999999999999997776 99999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 638 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
+.++..++ .+...|++++|+..++++++.+|.. . ....
T Consensus 178 ~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~----------------------------------------~~~~ 216 (656)
T PRK15174 178 GDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ----------------------------------------ESAG 216 (656)
T ss_pred HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch----------------------------------------hHHH
Confidence 88877664 4788999999999999888765432 1 1234
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHH----HHHHHHHHHHHhccCHHHHHHHHhc---
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTT----AYEEMTKLIKKARNNASAYEKRSEY--- 787 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~--- 787 (889)
.++.++...|++++|+..|++++...|+ .++..+|.++...|++++ |+..++++++..|++..++..++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999998 888999999999999986 8999999999999999888887773
Q ss_pred -CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHH
Q 002716 788 -CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 788 -~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~ 865 (889)
|++++|+..++++++++|+++.++..+|.++.+.|++++|+..|++++...|+...+. ..+.++...|++++|+..|+
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999874443 56778888899999999999
Q ss_pred HHHccCCCCH
Q 002716 866 AALSVDPNDQ 875 (889)
Q Consensus 866 ~al~l~P~~~ 875 (889)
++++.+|++.
T Consensus 377 ~al~~~P~~~ 386 (656)
T PRK15174 377 HYIQARASHL 386 (656)
T ss_pred HHHHhChhhc
Confidence 9999998853
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=3.2e-25 Score=268.86 Aligned_cols=386 Identities=12% Similarity=-0.015 Sum_probs=320.3
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
++|+..+.++...+|....++..+|.++...|++++|+..+++++..+| ++.++..++.++...|++++|+..++++++
T Consensus 32 ~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~ 111 (765)
T PRK10049 32 AEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS 111 (765)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999888999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
.+|++. . +..+|.++...|++++|+..+ +++++..|+++.++..+|.++...|..
T Consensus 112 ~~P~~~------~-~~~la~~l~~~g~~~~Al~~l------------------~~al~~~P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 112 GAPDKA------N-LLALAYVYKRAGRHWDELRAM------------------TQALPRAPQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred hCCCCH------H-HHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCCCh
Confidence 999999 7 888999999999999997777 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHH-----HHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc---CCCh-----HHHHHHHH
Q 002716 621 EAAMRSLQLARQHAASDHE-----RLVYEGWILY-----DTSHC---EEGLRKAEESIQM---KRSF-----EAFFLKAY 679 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~~~~-----~~~~lg~~~~-----~~g~~---~eA~~~~~~al~~---~p~~-----~a~~~la~ 679 (889)
++|+..++++.. .|.... ....+..+.. ..+++ ++|++.++.+++. +|+. .+......
T Consensus 167 e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 167 APALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 999999998776 554211 1222222222 22334 7899999999865 3333 12222122
Q ss_pred HHHHcCCCCCcchhhhhhHHHHhcchhhhCc-----hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHH
Q 002716 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLR-----KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQ 748 (889)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~-----~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~ 748 (889)
.+...+ .+++|+..|+..+. +..+...+|.+|...|++++|+..|+++++..|. ....
T Consensus 246 ~Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 246 ALLARD-----------RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHhh-----------hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 334556 78888888887743 2344555799999999999999999999988764 3566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccC-------------H--HHHHHHHh----cCCHHHHHHHHHHHHhcCCCChH
Q 002716 749 GLARVHFLKNNKTTAYEEMTKLIKKARNN-------------A--SAYEKRSE----YCDRELTRADLEMVTQLDPLRVY 809 (889)
Q Consensus 749 ~La~~~~~~g~~~~A~~~~~~al~~~~~~-------------~--~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~ 809 (889)
.++.++...|++++|+..++++....|.. . .++...+. -|+.++|+..+++++...|.++.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 78888999999999999999999987621 1 23333333 28999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 810 PYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 810 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
++..+|.++...|++++|+..++++++.+|+. ......+..+...|++++|...++++++..|+++.+..+-...
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999996 5555788889999999999999999999999999887654443
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.8e-25 Score=230.70 Aligned_cols=377 Identities=17% Similarity=0.108 Sum_probs=271.1
Q ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhh
Q 002716 378 TDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (889)
Q Consensus 378 ~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~ 457 (889)
.....+.++-..|+-+++.|+|++||++|.+|++..+..+.. +.|.+-.|...+.
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF-------------------------YsNraAcY~~lgd 164 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF-------------------------YSNRAACYESLGD 164 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh-------------------------hhhHHHHHHHHhh
Confidence 344557788899999999999999999999999987664321 2233445556666
Q ss_pred cCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHH------------------HHH------------c
Q 002716 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEIN------------------RIL------------G 507 (889)
Q Consensus 458 ~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~------------------kal------------~ 507 (889)
+ ++-+++..+|++++|+...+++.++..+-..|++++|+.... +.| +
T Consensus 165 ~---~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k 241 (606)
T KOG0547|consen 165 W---EKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLK 241 (606)
T ss_pred H---HHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 6 888899999999999999999999999999999999876442 111 1
Q ss_pred --CCC---CHHH---H----------------------HHHHHHHHhc---ccHHHHHHHHHHHHHhC-----CC--Ccc
Q 002716 508 --FKL---ALEC---L----------------------ELRFCFFLAL---EDYQAALCDVQAILTLS-----PD--YRM 547 (889)
Q Consensus 508 --~~p---~~~~---l----------------------~~~a~~~~~~---g~~~~A~~~~~~al~~~-----p~--~~~ 547 (889)
..| ++.. + ..-+.-++.. ..|..|...+.+..... -+ +..
T Consensus 242 ~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 242 ENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred ccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchh
Confidence 011 0000 0 0000001111 24555555444433211 11 111
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHH
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 627 (889)
...-+.++.+.|..+...|++-.|..-| ..+|.++|.....|..+|.+|...++.++-...|
T Consensus 322 le~~A~al~~~gtF~fL~g~~~~a~~d~------------------~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F 383 (606)
T KOG0547|consen 322 LEYMAEALLLRGTFHFLKGDSLGAQEDF------------------DAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDF 383 (606)
T ss_pred HHHHHHHHHHhhhhhhhcCCchhhhhhH------------------HHHHhcCcccchHHHHHHHHHhhhhccHHHHHHH
Confidence 1111356667777777778777775555 9999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchh
Q 002716 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (889)
Q Consensus 628 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~ 706 (889)
++|.+++|.++++|+..|.+++-.+++++|+..|++++.++|++ -++..++.++
T Consensus 384 ~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~------------------------- 438 (606)
T KOG0547|consen 384 NKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL------------------------- 438 (606)
T ss_pred HHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-------------------------
Confidence 99999999999999999999999999999999999999999998 5455555444
Q ss_pred hhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc------CH
Q 002716 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN------NA 778 (889)
Q Consensus 707 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~------~~ 778 (889)
++.++++++...|+.+.+..|. +.+...|.++..+++|++|++.|.++++..|. ++
T Consensus 439 ----------------Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 439 ----------------YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 4444566666666666666666 56666666666666666666666666666664 33
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 779 SAYEKRSEY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 779 ~~~~~~~~~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
..+...+.. +++..|...+++|+++||..-.++..+|.+..++|+.++|+++|++++.+..+.
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 222222221 677899999999999999999999999999999999999999999998776553
No 17
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-24 Score=226.27 Aligned_cols=399 Identities=14% Similarity=0.129 Sum_probs=301.8
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF 521 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~ 521 (889)
..+++.|.-++..+.| ++||.+|++||++.|+.+..|.+++.+|...|+|++.++...++++++| ...+++.++..
T Consensus 116 ~~lK~~GN~~f~~kkY---~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKY---DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA 192 (606)
T ss_pred HHHHhhhhhhhhcccH---HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence 3456788899999999 9999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHhcccHHHHHHHHHHHHHh--CCCCcchhhhHHHHHHHHHHHH--Hhh-c----hhHH---HHHHHhhhhc--cccc--
Q 002716 522 FLALEDYQAALCDVQAILTL--SPDYRMFEGRVAASQLHMLVRE--HID-N----WTIA---DCWLQLYDRW--SSVD-- 585 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~a~~~lg~~~~--~~~-~----~~~A---~~~~~l~~~~--~~~d-- 585 (889)
+..+|++++|+.+..-.--. ..+......--+.+...|..-. ..+ + ...+ ..+|..|.-- ...+
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 99999999999876543211 1111100000001111111100 000 0 0000 0111111100 0000
Q ss_pred ----cc---chHHH------------HHHHHh------cC-CCC---------hHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 586 ----DI---GSLSV------------IYQMLE------SD-APK---------GVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 586 ----d~---~sl~~------------~~~al~------~~-p~~---------~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
|. +.+.. +..+-+ .. ..+ ..++...|..++-.|++..|...|+.+
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 00 00000 000000 00 111 455666777778888888888888888
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc
Q 002716 631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR 710 (889)
Q Consensus 631 l~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~ 710 (889)
+.++|.+...+..+|.+|.+..+.++-...|.+|.+++|++.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-------------------------------------- 394 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-------------------------------------- 394 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--------------------------------------
Confidence 888888888788888888888888888888888888888772
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc-
Q 002716 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY- 787 (889)
Q Consensus 711 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~- 787 (889)
.+|+..|.+++-.+++++|+..|++++.++|+ .++..++-+.+++++++++...|+.+++..|+.+..|...+..
T Consensus 395 --dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 395 --DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred --chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 47888889999999999999999999999999 7888899999999999999999999999999988888776663
Q ss_pred ---CCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCC
Q 002716 788 ---CDRELTRADLEMVTQLDPL------RVYPYRYRAAVLM-DSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGD 856 (889)
Q Consensus 788 ---~~~~~A~~~l~~al~l~p~------~~~~~~~la~~~~-~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~ 856 (889)
+++++|.+.|.+++.+.|. ++.++.+.|.+.. -.+++.+|+..+++|++++|..+..+ -++.+..++|+
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh
Confidence 8999999999999999998 6666666665333 34899999999999999999986555 88999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 857 VLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 857 ~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
.++|+++|+++..+...-.+++..|+-+
T Consensus 553 i~eAielFEksa~lArt~~E~~~a~s~a 580 (606)
T KOG0547|consen 553 IDEAIELFEKSAQLARTESEMVHAYSLA 580 (606)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999998888888887643
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.1e-23 Score=255.58 Aligned_cols=387 Identities=10% Similarity=-0.028 Sum_probs=307.2
Q ss_pred hHHHhcccHHHHHHHHHHHHHcCcchh--HhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHH
Q 002716 391 CVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDL 468 (889)
Q Consensus 391 ~~~~~~g~~~eA~~~~~~al~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~ 468 (889)
.+..-.|++++|++.++++....+..+ +..+|.++...|+ + ++|+..+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~---------------------------~---~~A~~~~ 72 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ---------------------------W---QNSLTLW 72 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---------------------------H---HHHHHHH
Confidence 355678999999999999886444433 5556655555554 4 7788889
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 469 ~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
+++++++|+++.++..+|.++...|++++|+..+++++...| +.. +..+|.++...|++++|+..++++++.+|++.
T Consensus 73 ~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~- 150 (765)
T PRK10049 73 QKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQ- 150 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-
Confidence 999999999999999999999999999999999999999999 778 88999999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC----------ChHHHHHHHHHHHHh
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP----------KGVLYFRQSLLLLRL 617 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~----------~~~~~~~la~~~~~~ 617 (889)
.++..++.++...+..++|+..+ +++.. .|. ...+...++......
T Consensus 151 -----~~~~~la~~l~~~~~~e~Al~~l------------------~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 151 -----QYPTEYVQALRNNRLSAPALGAI------------------DDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred -----HHHHHHHHHHHHCCChHHHHHHH------------------HhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 78888899999999999996666 43333 322 111111111111223
Q ss_pred CCH---HHHHHHHHHHHHcCCCcHHH-------HHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHc
Q 002716 618 NCP---EAAMRSLQLARQHAASDHER-------LVY-EGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLKAYALADS 684 (889)
Q Consensus 618 g~~---~~A~~~l~~al~~~p~~~~~-------~~~-lg~~~~~~g~~~eA~~~~~~al~~~p~~--~a~~~la~~~~~~ 684 (889)
+++ ++|+..++.+++..|.++.. ... +| .++..|++++|+..|+++++..|.. .+...++.++...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 344 77888888888664433322 122 33 3467789999999999988876432 2334457788888
Q ss_pred CCCCCcchhhhhhHHHHhcchhhhCch--------hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------------
Q 002716 685 SQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------------ 744 (889)
Q Consensus 685 ~~~~~~~~~~~~~~~~Al~~~~~~~~~--------~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------------ 744 (889)
+ .+++|+..+.+.+.. ......++.++...|++++|+..++++....|.
T Consensus 286 g-----------~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p 354 (765)
T PRK10049 286 H-----------QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIP 354 (765)
T ss_pred C-----------CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCC
Confidence 8 777777777665221 245677888899999999999999999988762
Q ss_pred -----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 745 -----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 745 -----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
.++..+|.++...|++++|++.+++++...|.+..++..++.. |+.++|+..+++++.++|++...+..+|
T Consensus 355 ~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 355 NDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3567899999999999999999999999999999998888873 8999999999999999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCHHHHH
Q 002716 816 AVLMDSHKENEAIAELSRAIAFKADLHLLH 845 (889)
Q Consensus 816 ~~~~~~g~~~eA~~~l~kal~~~p~~~~l~ 845 (889)
.++...|++++|...++++++..|++....
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999985554
No 19
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=4.1e-22 Score=200.43 Aligned_cols=324 Identities=18% Similarity=0.167 Sum_probs=241.6
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE 526 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g 526 (889)
+|..+..++.+ ..|+..|..|++.||++..+++.+|.+|+..|+-.-|+..+.+++++.| ...+...+|.+++++|
T Consensus 44 lGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 55666677777 8999999999999999999999999999999999999999999999999 7778889999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 527 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
++++|+.+|+++|..+|++.... ++...++.+........++..++ .+.|-...+..+.+.+++.|.++..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~---eaqskl~~~~e~~~l~~ql~s~~------~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVL---EAQSKLALIQEHWVLVQQLKSAS------GSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhH---HHHHHHHhHHHHHHHHHHHHHHh------cCCchhhHHHHHHHHHhcCcchhHH
Confidence 99999999999999999765221 23333444433333333333332 2223333466669999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 002716 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (889)
Q Consensus 607 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~ 686 (889)
+...+.+|...|++..|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-. |....
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~---YKklk- 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF---YKKLK- 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH---HHHHH-
Confidence 99999999999999999999999999999999999999999999999999999999999999998211100 00000
Q ss_pred CCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHHHHHHcCCH
Q 002716 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNK 760 (889)
Q Consensus 687 ~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~ 760 (889)
++.+.++ -+.-....++|.++++..++.++.+|+ ..+..+-.++...|++
T Consensus 268 ------Kv~K~le------------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 268 ------KVVKSLE------------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred ------HHHHHHH------------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 0000111 122234567788888888888888877 3333455566666667
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 761 TTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 761 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
.+|+..+..+++.+|+++.++..+|.+|+-...|+.||..|++|.+.+++
T Consensus 324 ------------------------------~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 324 ------------------------------GEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ------------------------------HHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 55555555555566666666666666666666666666666666666665
Q ss_pred H
Q 002716 841 L 841 (889)
Q Consensus 841 ~ 841 (889)
+
T Consensus 374 n 374 (504)
T KOG0624|consen 374 N 374 (504)
T ss_pred c
Confidence 4
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=8.9e-21 Score=225.57 Aligned_cols=428 Identities=12% Similarity=-0.003 Sum_probs=322.8
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCcchh--HhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChh
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 462 (889)
..+..+.+.+++|++++|+..|+++++..+..+ ...++.++...|+ + +
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~---------------------------~---~ 85 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR---------------------------D---Q 85 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC---------------------------c---H
Confidence 567778899999999999999999998776542 3344444443333 3 7
Q ss_pred HHHHHHHHhhhcCCCChhhHHHH--HHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 463 KRWEDLDKATALDPTLSYPYMYR--ASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 463 ~A~~~~~~al~~dp~~~~a~~~l--a~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
+|+..+++++ +|.+...+..+ |.++..+|++++|++.|+++++.+| +++++..++..+...++.++|+..++++.
T Consensus 86 ~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 86 EVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 7777788888 55454444444 7789999999999999999999999 88888888888899999999999999999
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~ 619 (889)
..+|.+. . +..++.++...++..+|+..+ +++++.+|++..++..+..++...|-
T Consensus 164 ~~dp~~~------~-~l~layL~~~~~~~~~AL~~~------------------ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 164 ERDPTVQ------N-YMTLSYLNRATDRNYDALQAS------------------SEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred ccCcchH------H-HHHHHHHHHhcchHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9888865 2 244455555566666675555 99999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHH--HHHHHhc---------C---CHHHHHHHHHHHHh---cCCCh-----HHHHHH
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYE--GWILYDT---------S---HCEEGLRKAEESIQ---MKRSF-----EAFFLK 677 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~l--g~~~~~~---------g---~~~eA~~~~~~al~---~~p~~-----~a~~~l 677 (889)
...|.+...+--+........+... +.-..+. + -.+.|+..++..+. ..|.. .+..-.
T Consensus 219 ~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Dr 298 (822)
T PRK14574 219 VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDR 298 (822)
T ss_pred cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHH
Confidence 8888876654322221111111111 1111111 1 34567777777776 34543 223334
Q ss_pred HHHHHHcCCCCCcchhhhhhHHHHhcchhhhC-----chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------
Q 002716 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRL-----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------- 744 (889)
Q Consensus 678 a~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~-----~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-------- 744 (889)
-.++...+ +..++++.|+... -+..+....|..|...++.++|+..|+.++...+.
T Consensus 299 l~aL~~r~-----------r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 299 LGALLVRH-----------QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred HHHHHHhh-----------hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch
Confidence 44555566 7888888887763 13667888999999999999999999999886522
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc------------cCH---HHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 002716 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR------------NNA---SAYEKRSE----YCDRELTRADLEMVTQLDP 805 (889)
Q Consensus 745 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~~------------~~~---~~~~~~~~----~~~~~~A~~~l~~al~l~p 805 (889)
.....|-..|...+++++|..++++..+..| +|+ .....++. -|+..+|.+.+++.+...|
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP 447 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAP 447 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3356788999999999999999999998655 111 12222222 2899999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002716 806 LRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL-HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 806 ~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l-~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l 880 (889)
.+......+|.++...|.+.+|...++.+..+.|++..+ ...+..+..+|++.+|.....++++..|+++.+.++
T Consensus 448 ~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l 523 (822)
T PRK14574 448 ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQEL 523 (822)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHH
Confidence 999999999999999999999999999999999997444 478888888999999999999999999999988764
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.2e-22 Score=222.42 Aligned_cols=301 Identities=15% Similarity=0.147 Sum_probs=252.1
Q ss_pred HHHHHHHH--HhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 482 YMYRASSL--MTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 482 ~~~la~~~--~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
+..+|..| ..+-+..+|+..|.+.-...+ ...++..+|..|+.+++|++|..+|+.+-+.+|-.. +..-..
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv------~~meiy 393 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV------KGMEIY 393 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc------cchhHH
Confidence 33444444 455577899999999555555 567788899999999999999999999999998766 444444
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 638 (889)
..+.++.++--+- .++ .+..+..+|..|+.|..+|.+|.-+++++.|+++|++|++++|...
T Consensus 394 ST~LWHLq~~v~L-s~L-----------------aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa 455 (638)
T KOG1126|consen 394 STTLWHLQDEVAL-SYL-----------------AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA 455 (638)
T ss_pred HHHHHHHHhhHHH-HHH-----------------HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc
Confidence 5555555442221 111 1677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHH
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~L 718 (889)
.++..+|.-+..+..+|.|...|+.|+..+|.+- .+|+.+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY----------------------------------------nAwYGl 495 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY----------------------------------------NAWYGL 495 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh----------------------------------------HHHHhh
Confidence 9999999999999999999999999998888762 377788
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHH
Q 002716 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 796 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 796 (889)
|.+|.++++++.|.-.|++|++++|. .....+|.++.+.|+. ++|+..
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~------------------------------d~AL~~ 545 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK------------------------------DKALQL 545 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh------------------------------hHHHHH
Confidence 88888899999999999999999998 6777789999999988 666667
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQ 875 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~ 875 (889)
+++|+.+||.++-..+..|.++...+++++|+..+++.-++-|+. .++.+.+.+|.++|+.+.|+..|.=|++++|.-.
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 777788888999999999999999999999999999999999997 4555999999999999999999999999999866
Q ss_pred H
Q 002716 876 E 876 (889)
Q Consensus 876 ~ 876 (889)
+
T Consensus 626 ~ 626 (638)
T KOG1126|consen 626 Q 626 (638)
T ss_pred h
Confidence 6
No 22
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-21 Score=208.12 Aligned_cols=409 Identities=14% Similarity=0.116 Sum_probs=293.9
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE 526 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g 526 (889)
.|.+.+..+.| +.|+..|.+||.++|++...|.++..+|...|+|++|++.-.+.++++| -+..|..+|..++.+|
T Consensus 8 kgnaa~s~~d~---~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDF---ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccH---HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 35555666777 9999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccc-cc--------chHHHHHHHH
Q 002716 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD-DI--------GSLSVIYQML 597 (889)
Q Consensus 527 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~d-d~--------~sl~~~~~al 597 (889)
+|++|+..|.+.|+.+|++. .....+..++.. ++.. ...++--.-|+.+. +. .....+.+.+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~------~L~~gl~~a~~~--~~~~-~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNK------QLKTGLAQAYLE--DYAA-DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred cHHHHHHHHHHHhhcCCchH------HHHHhHHHhhhH--HHHh-hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 99999999999999999998 555566666511 1111 11110000011110 00 0112223334
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHH--HHHHHHH-----HcCC---------------------CcHHHHHHHHHHHH
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAM--RSLQLAR-----QHAA---------------------SDHERLVYEGWILY 649 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~--~~l~~al-----~~~p---------------------~~~~~~~~lg~~~~ 649 (889)
..+|.+...+.+--.+....|.....- ..+.... ...| ........+|...+
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 444443332221100000000000000 0000000 0001 01224567899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch-----------hHHHHH
Q 002716 650 DTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-----------GQALNN 717 (889)
Q Consensus 650 ~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~-----------~~~~~~ 717 (889)
...+++.|++.|..++.++ .. ..+.+.+.++...+ .+.+.+....++... ..+...
T Consensus 236 kkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~-----------~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG-----------KYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc-----------HHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 55 77778888888888 555555555444221 445566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh----cCCHHHH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELT 793 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~~A 793 (889)
+|..|..+++++.|+.+|++++....+ ..+.......+++++......-.+|..+.-....|. .|++..|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 888999999999999999998876544 344455566777777777777677755433333333 2899999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCC
Q 002716 794 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDP 872 (889)
Q Consensus 794 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l~P 872 (889)
+..|.+++..+|+++..|.++|.+|.+.|.+..|+...+++++++|+..-.+ ..+.++..+.+|++|++.|+++++.+|
T Consensus 378 v~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 378 VKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999974444 568888888999999999999999999
Q ss_pred CCHHHHHHHHhhhc
Q 002716 873 NDQEMLELHSRVYS 886 (889)
Q Consensus 873 ~~~~~l~l~~~~~~ 886 (889)
++.++++.|.++.+
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999998764
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3e-22 Score=219.37 Aligned_cols=298 Identities=13% Similarity=0.067 Sum_probs=255.4
Q ss_pred hhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhccc
Q 002716 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALED 527 (889)
Q Consensus 449 g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~ 527 (889)
|..|.....| ..++|+..|.+.-+.-++-.|....+|..|++.++|++|.+.|+.+-+..| ..+.......+++.+.+
T Consensus 324 ~~~~~~~s~y-~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~ 402 (638)
T KOG1126|consen 324 GEGYRSLSQY-NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD 402 (638)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh
Confidence 3344433333 338899999997777788889999999999999999999999999999999 55555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~ 607 (889)
--+--...+.++..+|+.+ ++|..+|.+|..+++++.|++.| +++++++|....+|
T Consensus 403 ~v~Ls~Laq~Li~~~~~sP------esWca~GNcfSLQkdh~~Aik~f------------------~RAiQldp~faYay 458 (638)
T KOG1126|consen 403 EVALSYLAQDLIDTDPNSP------ESWCALGNCFSLQKDHDTAIKCF------------------KRAIQLDPRFAYAY 458 (638)
T ss_pred hHHHHHHHHHHHhhCCCCc------HHHHHhcchhhhhhHHHHHHHHH------------------HHhhccCCccchhh
Confidence 4444455677889999999 99999999999999999999888 99999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~ 687 (889)
..+|.-+.....+|.|+.+|+.|+..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+.
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--------------- 523 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--------------- 523 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999873
Q ss_pred CCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~ 765 (889)
.....+|.++.++|+.++|+..|++|+.++|. -..+..|.+++..+++++|+.
T Consensus 524 -------------------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 524 -------------------------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred -------------------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 24566788999999999999999999999999 667789999999999966666
Q ss_pred HHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 766 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.++++- ++-|+...++..+|.+|.+.|+.+.|+..|.-|..++|..
T Consensus 579 ~LEeLk------------------------------~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 579 ELEELK------------------------------ELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHH------------------------------HhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 555554 4456667778888999999999999999999999888874
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6e-21 Score=199.69 Aligned_cols=363 Identities=16% Similarity=0.080 Sum_probs=297.5
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHcC--cchhHhhHHHHHhhcCCcHHHHHHHhhhhhccC---------cchhH
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT---------PLGWM 451 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---------~~g~~ 451 (889)
...+|..|.++.+.|..+.|+..|..++..- +..++..|..+- ...+.+..++...+ ..+.+
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 4568899999999999999999999998732 333444444321 12233333332222 13456
Q ss_pred HHHHhhcCChhHHHHHHHHhhhc-CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ 529 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~-dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~ 529 (889)
+++.... ++++..+....+. .|++...-...|.+.+...++++|+..|+.+.+.+| ..+-+.+...+++..++-.
T Consensus 237 ~~el~q~---~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 237 YQELHQH---EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHH---HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 6666666 8888888888888 899999888999999999999999999999999999 7777777777777777766
Q ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHH
Q 002716 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (889)
Q Consensus 530 ~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~ 609 (889)
+---.-+.+..++.--+ +....+|..|...++.++|+.+| +++++++|....+|..
T Consensus 314 kLs~LA~~v~~idKyR~------ETCCiIaNYYSlr~eHEKAv~YF------------------kRALkLNp~~~~aWTL 369 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYRP------ETCCIIANYYSLRSEHEKAVMYF------------------KRALKLNPKYLSAWTL 369 (559)
T ss_pred HHHHHHHHHHHhccCCc------cceeeehhHHHHHHhHHHHHHHH------------------HHHHhcCcchhHHHHH
Confidence 66566677777877666 67777889999999999999999 9999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCC
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS 688 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~ 688 (889)
+|.-|.++.+...|+..|++|++++|.+..+|+.+|+.|.-++-..=|+-+|++|+...|++ ..|..+|.+|...+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~--- 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLN--- 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999988
Q ss_pred CcchhhhhhHHHHhcchhhhCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHc-------cCcc--hHHHHHHHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALK-------IRHT--RAHQGLARVHF 755 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~-------~~p~--~a~~~La~~~~ 755 (889)
++++|++||..+..- ..++..||.+|.+.++.++|..+|++-++ ..|. .+...||..+.
T Consensus 447 --------~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 447 --------RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred --------cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 999999999998332 57899999999999999999999999887 3343 67777999999
Q ss_pred HcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 756 LKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL 803 (889)
Q Consensus 756 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l 803 (889)
..+++++|..+..+++.-.+ ..++|...++...+.
T Consensus 519 k~~~~~~As~Ya~~~~~~~~-------------e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 519 KMKDFDEASYYATLVLKGET-------------ECEEAKALLREIRKI 553 (559)
T ss_pred hhcchHHHHHHHHHHhcCCc-------------hHHHHHHHHHHHHHh
Confidence 99999999888887766533 125666666655443
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=8.5e-21 Score=214.40 Aligned_cols=304 Identities=12% Similarity=0.005 Sum_probs=227.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
...+.+|..+...|++++|+..|+++++.+| +..++..+|.++...|++++|+..+++++...+... .....++..+
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~L 113 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR--EQRLLALQEL 113 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH--HHHHHHHHHH
Confidence 3556778888899999999999999999998 788888899999999999999999998887432222 1112467778
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 638 (889)
|.++...|++++|..++ .++++.+|.+..++..++.++...|++++|+..++++++..|.+.
T Consensus 114 a~~~~~~g~~~~A~~~~------------------~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 114 GQDYLKAGLLDRAEELF------------------LQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHHCCCHHHHHHHH------------------HHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 88888888888887666 788887888888888888888888888888888888888776543
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhH
Q 002716 639 -----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713 (889)
Q Consensus 639 -----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~ 713 (889)
..+..+|.++...|++++|+..|+++++.+|+.. .
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------------~ 215 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV----------------------------------------R 215 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH----------------------------------------H
Confidence 2455677888888888888888888887666541 2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCH
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR 790 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 790 (889)
++..+|.++...|++++|+..|++++..+|. .++..++.+|...|++++|...+++
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~--------------------- 274 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR--------------------- 274 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Confidence 4566777777788888888888888877766 4566778888888888555555444
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHH-H-cCCHHHHHHHHHHH
Q 002716 791 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHE-H-TGDVLGALRDCRAA 867 (889)
Q Consensus 791 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~-~-~g~~~~A~~~~~~a 867 (889)
+++.+|+.. .+..+|.++.+.|++++|+..++++++..|+...+. +.+.... . .|+..+|+..+++.
T Consensus 275 ---------~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 275 ---------ALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred ---------HHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 444455543 347889999999999999999999999999986555 3333332 1 35788887777766
Q ss_pred H----ccCCCC
Q 002716 868 L----SVDPND 874 (889)
Q Consensus 868 l----~l~P~~ 874 (889)
+ ..+|++
T Consensus 345 ~~~~~~~~p~~ 355 (389)
T PRK11788 345 VGEQLKRKPRY 355 (389)
T ss_pred HHHHHhCCCCE
Confidence 5 445553
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.3e-21 Score=197.14 Aligned_cols=462 Identities=15% Similarity=0.108 Sum_probs=339.1
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A 464 (889)
.+++|+.-|-....+.+|+..|+-.+..... +..|+ .-.+.|.+|+....| .+|
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf-~nag~----------------------lkmnigni~~kkr~f---ska 256 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMF-PNAGI----------------------LKMNIGNIHFKKREF---SKA 256 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhccccc-CCCce----------------------eeeeecceeeehhhH---HHH
Confidence 4577888888888899999999877653211 11110 113578888888888 999
Q ss_pred HHHHHHhhhcCCCC-----hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 465 WEDLDKATALDPTL-----SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 465 ~~~~~~al~~dp~~-----~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
+..|..|+..-|.- .....+.|..+.+.|+|+.|+..|+.+++..|+..+-+.+..+++..|+-++-.+.|++++
T Consensus 257 ikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli 336 (840)
T KOG2003|consen 257 IKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLI 336 (840)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHh
Confidence 99999999888753 3456677889999999999999999999999988888888999999999999999999998
Q ss_pred HhC--CCCcchh---hh-HHHHHHHHHHHHHhh-----chhHHHHHHHhhhhccc----ccc-cc---hHHHHHHHHhcC
Q 002716 540 TLS--PDYRMFE---GR-VAASQLHMLVREHID-----NWTIADCWLQLYDRWSS----VDD-IG---SLSVIYQMLESD 600 (889)
Q Consensus 540 ~~~--p~~~~~~---~~-~~a~~~lg~~~~~~~-----~~~~A~~~~~l~~~~~~----~dd-~~---sl~~~~~al~~~ 600 (889)
.+- |++..+. .. -..+..-+.-.-.+. +...|.+++-...+.-+ .+- +| .++.+. +-...
T Consensus 337 ~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk-~s~~~ 415 (840)
T KOG2003|consen 337 DIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK-ASQHA 415 (840)
T ss_pred cCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH-Hhhhh
Confidence 641 1111000 00 000111111111112 22233333310000000 000 00 011111 11111
Q ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCh-HHHHH
Q 002716 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDT--SHCEEGLRKAEESIQMKRSF-EAFFL 676 (889)
Q Consensus 601 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~-~a~~~ 676 (889)
|-...+-.+.+..+++.|+++.|++.+.-.-+.+... ..+-.++..+++.+ .++..|..+...++.++.-+ .+..+
T Consensus 416 ~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~n 495 (840)
T KOG2003|consen 416 ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTN 495 (840)
T ss_pred hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhc
Confidence 2222334566778899999999999887655444332 33455666666654 36788899999999888877 77788
Q ss_pred HHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHccC--cchHHHHH
Q 002716 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGL 750 (889)
Q Consensus 677 la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~--p~~a~~~L 750 (889)
.|.+-...| .+++|.+.|..+++. .++++++|..+..+|+.++|+++|-+.-.+- ..+.+..+
T Consensus 496 kgn~~f~ng-----------d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 496 KGNIAFANG-----------DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred CCceeeecC-----------cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888777777 899999999988665 7889999999999999999999998765443 33888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c---CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHH
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~---~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 826 (889)
+.+|....+..+|++++.++...-|+++.+...++. | |+..+|.+++-.....-|.+.+...+||..|....-.++
T Consensus 565 aniye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999888888 4 788889998888888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 827 AIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 827 A~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
|+.+|+++--+.|+..-|. +.+.|+.+.|+|++|...|+..-...|.+.+-+..+.|+
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri 703 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 9999999999999986665 678888888999999999999999999999999887775
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=7.7e-18 Score=182.53 Aligned_cols=477 Identities=14% Similarity=0.056 Sum_probs=381.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcch--hHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 363 ~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
+.+..+|+++++|.+.+.+.-.|+. +..-|+.|.+.+++|-+.-+.. .+..-|++--.+|+.+..-+.+..
T Consensus 393 ~darilL~rAveccp~s~dLwlAla-------rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 393 EDARILLERAVECCPQSMDLWLALA-------RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHH-------HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3477899999999998866433333 4567999999999997754433 344556666778888887777777
Q ss_pred hhhccCcchhHHH-----HHhhcCChhHHHHH----HHHhhhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC
Q 002716 441 VISSVTPLGWMYQ-----ERSLYCEGDKRWED----LDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (889)
Q Consensus 441 ~~~~~~~~g~~~~-----~~~~~~~~~~A~~~----~~~al~~---dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~ 508 (889)
.+......|.... ....-|+...+... ....+.+ +.+.-..|..-+..+...+-++-|+..|..+++.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 7766665553221 11111211122111 2223322 3345567888899999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccccc
Q 002716 509 KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (889)
Q Consensus 509 ~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~ 587 (889)
.|. ...+...+.+--..|..++-..++++++...|... ..+.+.+..+...|+...|...+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae------~lwlM~ake~w~agdv~~ar~il------------ 607 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAE------ILWLMYAKEKWKAGDVPAARVIL------------ 607 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcch------hHHHHHHHHHHhcCCcHHHHHHH------------
Confidence 994 44444444555567899999999999999999888 67777788888889999996555
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 588 ~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
.++++.+|++..+|+.--.+.....+++.|...|.++....|. ..+|+.-+.....+++.++|++.++++++.
T Consensus 608 ------~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 608 ------DQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred ------HHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998886 778888889999999999999999999999
Q ss_pred CCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 668 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 668 ~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
.|++ ..|..+|.++.+.+ .++.|...|..+++. ...|..|+.+-...|+...|...++++.-.+
T Consensus 681 fp~f~Kl~lmlGQi~e~~~-----------~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQME-----------NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred CCchHHHHHHHhHHHHHHH-----------HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 9999 99999999999998 999999999998554 7789999999999999999999999999999
Q ss_pred cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 002716 743 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820 (889)
Q Consensus 743 p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~ 820 (889)
|. ..|....+.-.+.|+.+.|...+.++++..|+++.++.....+.-...-......|++....++.++...|..+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~ 829 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWS 829 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHH
Confidence 99 5666666778889999999999999999999999888777665111111334455666667888999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 002716 821 SHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHS 882 (889)
Q Consensus 821 ~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~ 882 (889)
..++++|.+.|+++++..|+. +.+.....++.+.|.-+.-.+.+.+...-+|.+.+..-..+
T Consensus 830 e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 830 EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 999999999999999999997 44445666677779999999999999999999987654433
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.5e-20 Score=212.39 Aligned_cols=263 Identities=13% Similarity=0.026 Sum_probs=226.9
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-C----HHHHHHHHHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A----LECLELRFCFF 522 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~----~~~l~~~a~~~ 522 (889)
.|..+...+.+ ++|+..|.++++.+|+++.++..+|.++...|++++|+..+++++...+ . ...+..+|.+|
T Consensus 41 ~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 41 KGLNFLLNEQP---DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHhcCCh---HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34455555666 8999999999999999999999999999999999999999999988644 2 35678889999
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC
Q 002716 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (889)
Q Consensus 523 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~ 602 (889)
...|++++|+..|+++++.+|.+. .++..++.++...|++++|...+ .++++..|.
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~------------------~~~~~~~~~ 173 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAE------GALQQLLEIYQQEKDWQKAIDVA------------------ERLEKLGGD 173 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchH------HHHHHHHHHHHHhchHHHHHHHH------------------HHHHHhcCC
Confidence 999999999999999999988877 78889999999999999997777 888887776
Q ss_pred Ch-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Q 002716 603 KG-----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 677 (889)
Q Consensus 603 ~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~l 677 (889)
+. ..+..+|.++...|++++|+..|+++++..|+...+++.+|.++...|++++|++.+++++..+|++.
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----- 248 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL----- 248 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----
Confidence 53 35678899999999999999999999999999999999999999999999999999999997766541
Q ss_pred HHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Q 002716 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 756 (889)
Q Consensus 678 a~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~ 756 (889)
..++..++.+|...|++++|+..++++++..|+ ..+..++.++..
T Consensus 249 ----------------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~ 294 (389)
T PRK11788 249 ----------------------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEE 294 (389)
T ss_pred ----------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 035667788899999999999999999999988 556889999999
Q ss_pred cCCHHHHHHHHHHHHHHhcc
Q 002716 757 KNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 757 ~g~~~~A~~~~~~al~~~~~ 776 (889)
.|++++|...++++++..|+
T Consensus 295 ~g~~~~A~~~l~~~l~~~P~ 314 (389)
T PRK11788 295 QEGPEAAQALLREQLRRHPS 314 (389)
T ss_pred hCCHHHHHHHHHHHHHhCcC
Confidence 99997777666666665553
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-19 Score=187.84 Aligned_cols=368 Identities=13% Similarity=-0.004 Sum_probs=242.8
Q ss_pred HHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCC--CChhhHHHHHHHHHhccCHHHH
Q 002716 421 LARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP--TLSYPYMYRASSLMTKQNVEAA 498 (889)
Q Consensus 421 la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp--~~~~a~~~la~~~~~~g~~~~A 498 (889)
.+.++-..|....|++.+..++..++-.-.++.+.+.. -..+......+.--| .+...-+.++.++....+.+++
T Consensus 170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777777777776666555556666555 333333333333333 3333445567777777778888
Q ss_pred HHHHHHHHcC-CC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHH
Q 002716 499 LAEINRILGF-KL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ 576 (889)
Q Consensus 499 l~~l~kal~~-~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~ 576 (889)
+.-+....+. -| +.-.-...|.+.+.+.|+++|+..|+.+.+.+|-.. .-..+...+.+-.++-.+- .++
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl------~dmdlySN~LYv~~~~skL-s~L- 318 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL------DDMDLYSNVLYVKNDKSKL-SYL- 318 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc------hhHHHHhHHHHHHhhhHHH-HHH-
Confidence 8777777666 45 555566677788888888888888888888777655 2333333433333332221 111
Q ss_pred hhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHH
Q 002716 577 LYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 656 (889)
Q Consensus 577 l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~e 656 (889)
.+.+..++.-.++...-+|+.|...++.++|+.+|++|++++|....+|..+|.-|..+.+...
T Consensus 319 ----------------A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 319 ----------------AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred ----------------HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHH
Confidence 1556667777777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 657 GLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 657 A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
|++.|++|++++|.+ . +|+.||..|.-++...=|+-+|
T Consensus 383 Ai~sYRrAvdi~p~DyR-----------------------------------------AWYGLGQaYeim~Mh~YaLyYf 421 (559)
T KOG1155|consen 383 AIESYRRAVDINPRDYR-----------------------------------------AWYGLGQAYEIMKMHFYALYYF 421 (559)
T ss_pred HHHHHHHHHhcCchhHH-----------------------------------------HHhhhhHHHHHhcchHHHHHHH
Confidence 888888888888776 4 4444555555555666677777
Q ss_pred HHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHH
Q 002716 736 SNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRY 813 (889)
Q Consensus 736 ~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~ 813 (889)
++|....|. +.|..||.+|.+.++.++|++.|. .|+.....+..++..
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk------------------------------rai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK------------------------------RAILLGDTEGSALVR 471 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH------------------------------HHHhccccchHHHHH
Confidence 777777776 677777777777777744444444 444444445667777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC-------CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 814 RAAVLMDSHKENEAIAELSRAIAFK-------ADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 814 la~~~~~~g~~~eA~~~l~kal~~~-------p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
+|.+|.+.++..+|..+|++-++.. |.. ....-++..+...+++++|-.+...++.-++.-.+.-.++..++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 8888888888888888888777632 221 12224566666678888888878887777666666555555544
Q ss_pred c
Q 002716 886 S 886 (889)
Q Consensus 886 ~ 886 (889)
.
T Consensus 552 ~ 552 (559)
T KOG1155|consen 552 K 552 (559)
T ss_pred H
Confidence 3
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.88 E-value=1.1e-18 Score=207.70 Aligned_cols=402 Identities=12% Similarity=-0.046 Sum_probs=307.3
Q ss_pred HHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~ 530 (889)
....+.+ +.|+..|+++++.+|+++.+...++.++...|+.++|+..+++++...| ....+...|.++..+|++++
T Consensus 44 ~~r~Gd~---~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDT---APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCH---HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3344555 7889999999999999965544888899999999999999999994434 55555555889999999999
Q ss_pred HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH
Q 002716 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l 610 (889)
|+..|+++++.+|+++ .++..++..+...++.++|+..+ +++...+|.+... ..+
T Consensus 121 Aiely~kaL~~dP~n~------~~l~gLa~~y~~~~q~~eAl~~l------------------~~l~~~dp~~~~~-l~l 175 (822)
T PRK14574 121 ALALWQSSLKKDPTNP------DLISGMIMTQADAGRGGVVLKQA------------------TELAERDPTVQNY-MTL 175 (822)
T ss_pred HHHHHHHHHhhCCCCH------HHHHHHHHHHhhcCCHHHHHHHH------------------HHhcccCcchHHH-HHH
Confidence 9999999999999998 77888889999999999996666 9999999986554 556
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHH--HHHHHHHcCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL--KAYALADSSQD 687 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~--la~~~~~~~~~ 687 (889)
+.++...++..+|+..++++++..|++.+++..+..++...|-...|.+...+--...... ..+.. .+.-....+..
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 6666667788779999999999999999999999999999999999987766533221111 11111 11111211211
Q ss_pred C-CcchhhhhhHHHHhcchhhhCc-----h------hHHHHHHHHHHHHcCChHHHHHHHHHHHccC---cchHHHHHHH
Q 002716 688 S-SCSSTVVSLLEDALKCPSDRLR-----K------GQALNNLGSVYVDCGQLDLAADCYSNALKIR---HTRAHQGLAR 752 (889)
Q Consensus 688 ~-~~~~~~~~~~~~Al~~~~~~~~-----~------~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~---p~~a~~~La~ 752 (889)
+ .+.......++.|+..+...+. + ..+....-.++...|++.++++.|+...... |..+....|.
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 1 1111222244555554444321 1 2334455566778999999999999888554 5588889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhcc----------CHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------CC
Q 002716 753 VHFLKNNKTTAYEEMTKLIKKARN----------NASAYEKRSEYCDRELTRADLEMVTQLDP---------------LR 807 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~~A~~~l~~al~l~p---------------~~ 807 (889)
.|...++.++|...|.+++...++ ...+++...+-+++++|...+.+..+..| +.
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 999999999999999999886631 12345555555899999999999987544 23
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002716 808 VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 881 (889)
Q Consensus 808 ~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~ 881 (889)
..+...++.++...|++.+|.+.+++.+...|.+. +...+|.++...|.+.+|.+.+++++.++|++..+.-..
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 45677789999999999999999999999999974 445889999999999999999999999999987765443
No 31
>PHA02790 Kelch-like protein; Provisional
Probab=99.87 E-value=3.1e-22 Score=229.39 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=131.6
Q ss_pred CCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHH
Q 002716 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~ 255 (889)
.-++.+|||++++|+ +|+|||+|||++||||++||+++|+|+.+ +|++...++++++|+.+|+|+|||++. ++.++|
T Consensus 17 ~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV 93 (480)
T PHA02790 17 SMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNV 93 (480)
T ss_pred HhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccH
Confidence 457889999988766 79999999999999999999999999965 566531159999999999999999999 999999
Q ss_pred HHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccCh--HHHH
Q 002716 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ERVV 325 (889)
Q Consensus 256 ~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~--~~~~ 325 (889)
++||.+|++|.++.+++.|...|...+ +++||+.++.+|..|++..|.+.+.+|+.+|+...... ++|.
T Consensus 94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l-~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~ 164 (480)
T PHA02790 94 VNLLRASILTSVEFIIYTCINFILRDF-RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFD 164 (480)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhh
Confidence 999999999999999999999999998 89999999999999999999999999999999776543 4444
No 32
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.3e-18 Score=176.53 Aligned_cols=283 Identities=14% Similarity=0.062 Sum_probs=254.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-H
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-E 672 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~ 672 (889)
-.-...-|.+......+|.++...|++++|+..|+++.-.+|......-..|.++...|+++.-...-...+.++... .
T Consensus 222 le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 222 LHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred HHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh
Confidence 455566799999999999999999999999999999999999999999999999999999999888888888777555 6
Q ss_pred HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hH
Q 002716 673 AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA 746 (889)
Q Consensus 673 a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~----~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a 746 (889)
-|+--+..+.... +++.|+..-++.++ ...++..-|..+...|+.++|+-.|+.|..+.|. +.
T Consensus 302 ~wfV~~~~l~~~K-----------~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~ 370 (564)
T KOG1174|consen 302 HWFVHAQLLYDEK-----------KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEI 370 (564)
T ss_pred hhhhhhhhhhhhh-----------hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHH
Confidence 6777777777766 78888877777633 3789999999999999999999999999999988 89
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c-----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 002716 747 HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y-----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820 (889)
Q Consensus 747 ~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~-----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~ 820 (889)
|.+|-.+|...|.+.+|......++...|+++......|. . --.++|.+.+++++.+.|....+...+|.++..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988877763 2 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhhcC
Q 002716 821 SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYSH 887 (889)
Q Consensus 821 ~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~~~ 887 (889)
.|++++++..+++.+...||...-..+|.+....+.+++|+..|..||.+||++...++.+.++.+.
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKS 517 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhc
Confidence 9999999999999999999986666889999999999999999999999999999999998887653
No 33
>PHA02713 hypothetical protein; Provisional
Probab=99.86 E-value=9.1e-22 Score=228.62 Aligned_cols=145 Identities=12% Similarity=0.255 Sum_probs=132.2
Q ss_pred cCCCCccccEEEEeC-CeEEEehHHHHhhcChhhhhhhcCCCCCCC-cCceEecCCCCCHHHHHHHHHhhccCCCCCCCH
Q 002716 175 MSGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (889)
Q Consensus 175 ~~~~~~~~Dv~~~v~-~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~-~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~ 252 (889)
+..++.+|||+|+|+ |++|+|||.|||++|+||++||+++|+|+. +.+|+|+ ++++++|+.+|+|+|||+ +++
T Consensus 19 lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~ 93 (557)
T PHA02713 19 LLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISS 93 (557)
T ss_pred HHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCH
Confidence 357889999999997 899999999999999999999999999875 7899999 599999999999999996 578
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 253 NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 253 ~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
++|++||.+|++|.++.|++.|...|...+ +.+||+.++..+..+.+..|...|.+++.+|+......++|.
T Consensus 94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l-~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~ 165 (557)
T PHA02713 94 MNVIDVLKCADYLLIDDLVTDCESYIKDYT-NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFK 165 (557)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHhhC-CccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhh
Confidence 999999999999999999999999999988 889999999888888888899999999999987665555544
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.9e-18 Score=185.76 Aligned_cols=415 Identities=15% Similarity=0.079 Sum_probs=321.0
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
.+..| +-|+..-+++..+. +++.--+.+|.+++-.++++.|...++.-.-...+..+.++.+.++.+..++++|..
T Consensus 28 ~q~~y---~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 28 MQHRY---KTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred HHHhh---hHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455 66666667766655 556666789999999999999988887763333388899999999999999999998
Q ss_pred HHHHH------HHhCCCC---------cc----hhhhHHHHHHHHHHHHHhhchhHHHHHHHh-----------hhhccc
Q 002716 534 DVQAI------LTLSPDY---------RM----FEGRVAASQLHMLVREHIDNWTIADCWLQL-----------YDRWSS 583 (889)
Q Consensus 534 ~~~~a------l~~~p~~---------~~----~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l-----------~~~~~~ 583 (889)
.+... +..+|.+ .+ ........++.|.+|....+.++|..++.. ++++.+
T Consensus 104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs 183 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVS 183 (611)
T ss_pred HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 88722 1122222 11 122223456678888888888888777642 111100
Q ss_pred c------------c----------ccchHHHHHHHH----------hcC--------CCChHHHHHHHHHHHHhCCHHHH
Q 002716 584 V------------D----------DIGSLSVIYQML----------ESD--------APKGVLYFRQSLLLLRLNCPEAA 623 (889)
Q Consensus 584 ~------------d----------d~~sl~~~~~al----------~~~--------p~~~~~~~~la~~~~~~g~~~~A 623 (889)
. + +..-+..+-+.. ... .++..+....+..+...+++.+.
T Consensus 184 ~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c 263 (611)
T KOG1173|consen 184 AHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKEC 263 (611)
T ss_pred HHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHH
Confidence 0 0 000011111111 001 23456677788888889999999
Q ss_pred HHHHHHHHHcCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHH
Q 002716 624 MRSLQLARQHAASDHERL-VYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDA 701 (889)
Q Consensus 624 ~~~l~~al~~~p~~~~~~-~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~A 701 (889)
.+..+..++.+|-+...+ ..+| +++..|+..+-...-.+..+..|+. -.|+..|.-|.-.+ .+.+|
T Consensus 264 ~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~-----------k~seA 331 (611)
T KOG1173|consen 264 LKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIG-----------KYSEA 331 (611)
T ss_pred HHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhc-----------CcHHH
Confidence 999999999998766655 4455 8888888888888888888889998 88999998888888 99999
Q ss_pred hcchhhh--Cch--hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 702 LKCPSDR--LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 702 l~~~~~~--~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
.+++.++ +.+ +.+|...|..+...|.-++|+.+|..|-+..|. .....+|.-|...++++-|.+.|..++.+.|
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 9999998 444 889999999999999999999999999999988 7788899999999999999999999999999
Q ss_pred cCHHHHHHHHh--c--CCHHHHHHHHHHHHhc----CCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHH
Q 002716 776 NNASAYEKRSE--Y--CDRELTRADLEMVTQL----DPL---RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL 844 (889)
Q Consensus 776 ~~~~~~~~~~~--~--~~~~~A~~~l~~al~l----~p~---~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l 844 (889)
+++......|. | +.+.+|...|+.++.. .+. -...+.++|.++.+.+++++|+..+++++...|.+...
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 99998888887 2 7899999999999843 222 23458899999999999999999999999999998666
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 845 H-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 845 ~-l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
+ ..|.+|..+|+++.|+..|.++|.++|+|.-+-++++.+
T Consensus 492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 492 HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 6 789999999999999999999999999998887777664
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7e-19 Score=189.01 Aligned_cols=272 Identities=15% Similarity=0.086 Sum_probs=176.9
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 478 ~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
++.....++..++..++|.+-.+..+..+..+| +..++-..-.++...|+..+-...-.+++..+|+.+ ..|+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a------~sW~ 316 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA------LSWF 316 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC------cchh
Confidence 334445555555566666666666666666665 555554444455555555555555555555555555 4555
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
.+|..|...|++++|.++| .++..++|..+.+|...|..+...|..++|+..|..|-+.-|.
T Consensus 317 aVg~YYl~i~k~seARry~------------------SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYF------------------SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hHHHHHHHhcCcHHHHHHH------------------HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 5555555556666665555 5555566666666666666666666666666666666555555
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 637 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
.......+|.-|..+++++-|.+.|.+|+.+.|++ +.+++
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D----------------------------------------plv~~ 418 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD----------------------------------------PLVLH 418 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc----------------------------------------chhhh
Confidence 55555555555555566666666666655555554 24667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~---------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 787 (889)
.+|.+.+..+.|.+|..+|++++..-++ ..+.+||.++.+.+.+
T Consensus 419 Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~--------------------------- 471 (611)
T KOG1173|consen 419 ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY--------------------------- 471 (611)
T ss_pred hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH---------------------------
Confidence 7788888888888888888888733222 4577788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHH
Q 002716 788 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 843 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 843 (889)
++|+..+++++.+.|.++.++-.+|.+|...|+++.|+..|.+++.++|++..
T Consensus 472 ---~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 472 ---EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred ---HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 66666666677777788888888888888899999999999999998888733
No 36
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.86 E-value=5.6e-19 Score=178.05 Aligned_cols=329 Identities=14% Similarity=0.114 Sum_probs=263.7
Q ss_pred CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHH
Q 002716 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (889)
Q Consensus 475 dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 553 (889)
+|.++.-++.+|..++..|++..|+..|..+++.+| +..+++.+|.+|+.+|.-.-|+.++.++|++-|+.. .
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~------~ 107 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM------A 107 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH------H
Confidence 456677788999999999999999999999999999 999999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH---H------------HHHHHHHHHhC
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL---Y------------FRQSLLLLRLN 618 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~---~------------~~la~~~~~~g 618 (889)
+....|.+..++|++++|..-| .+.+..+|.+... . ......+...|
T Consensus 108 ARiQRg~vllK~Gele~A~~DF------------------~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADF------------------DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHH------------------HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999995555 8888888855432 1 12233445578
Q ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhH
Q 002716 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (889)
Q Consensus 619 ~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~ 698 (889)
+...|+.+....++..|-++..+...+.+|...|+...|+..++.+-++..++.
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnT-------------------------- 223 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNT-------------------------- 223 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccch--------------------------
Confidence 888888888888888888888888888888888888888888888776665551
Q ss_pred HHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 002716 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 699 ~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
+.++.+..+++..|+.+.++...+..++++|+ ..+. .|-...+..+.+..++++++.
T Consensus 224 --------------e~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklkKv~K~les~e~~ie~--- 282 (504)
T KOG0624|consen 224 --------------EGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLKKVVKSLESAEQAIEE--- 282 (504)
T ss_pred --------------HHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHHHHHHHHHHHHHHHhh---
Confidence 34555666666777888888888888888887 1111 122223333334444444332
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 002716 777 NASAYEKRSEYCDRELTRADLEMVTQLDPLRVY----PYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFH 851 (889)
Q Consensus 777 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~----~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~ 851 (889)
+++.+++...+++++.+|..+. .+..+..++...+++.+|+....+++.+.|++ ..+.-++..|
T Consensus 283 -----------~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 283 -----------KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY 351 (504)
T ss_pred -----------hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 4457888888888888887443 34556778999999999999999999999996 6677899999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 852 EHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 852 ~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
....+|+.|+.+|++|++.+|+|..+-+.+.+++
T Consensus 352 l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELNESNTRAREGLERAK 385 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 8889999999999999999999999888777654
No 37
>PHA03098 kelch-like protein; Provisional
Probab=99.85 E-value=1.2e-20 Score=221.43 Aligned_cols=141 Identities=16% Similarity=0.244 Sum_probs=130.4
Q ss_pred CCCccccEEEEe--CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 002716 177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (889)
Q Consensus 177 ~~~~~~Dv~~~v--~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~ 254 (889)
.++.+|||+|+| +|++|+|||.||+++|+||++||+++|+ +.+|+|+ + ++++|+.+|+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 478899999998 9999999999999999999999999997 6789999 5 999999999999999999 99999
Q ss_pred HHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 255 ~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
+.+||.+|++|.++.|+..|...|...+ +.+|++.++.+|..+++..|...|.+++..|+......+.|.
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l-~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~ 147 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKII-DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFI 147 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 9999999999999999999999999988 889999999999999999999999999999986554443433
No 38
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.85 E-value=1.3e-21 Score=199.55 Aligned_cols=150 Identities=22% Similarity=0.306 Sum_probs=137.9
Q ss_pred CCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCC--CCHH
Q 002716 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNG--VTPN 253 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~--~~~~ 253 (889)
.-+.+.+||+|+|++++|+|||+|||+||.|||+|++|||.|+.+..|.|++ ...++|+.+|.|||||++.. +..+
T Consensus 39 ~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed 116 (620)
T KOG4350|consen 39 FTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEED 116 (620)
T ss_pred hhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHH
Confidence 3467789999999999999999999999999999999999999999999995 77999999999999999872 3578
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHHHHh
Q 002716 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIF 328 (889)
Q Consensus 254 ~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~~ll 328 (889)
.+++.|.+|++|....|..+++.+|+..+ ..+|++.+++.|..|+.+.|...|+.|..+|....|..+.|..+-
T Consensus 117 ~lld~LslAh~Ygf~~Le~aiSeYl~~iL-~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LS 190 (620)
T KOG4350|consen 117 ILLDYLSLAHRYGFIQLETAISEYLKEIL-KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLS 190 (620)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHH-cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhh
Confidence 89999999999999999999999999988 789999999999999999999999999999988877777776553
No 39
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.85 E-value=6.9e-21 Score=219.98 Aligned_cols=148 Identities=21% Similarity=0.332 Sum_probs=137.3
Q ss_pred ccCCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHH
Q 002716 174 SMSGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (889)
Q Consensus 174 ~~~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~ 253 (889)
.+...+.+|||++.+++++|+|||.||||+||||++||+++|+|+.+.+|+|.+ |++.+|..+++|+|||++. ++.+
T Consensus 29 ~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~-i~~~ 105 (571)
T KOG4441|consen 29 ELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLE-ISED 105 (571)
T ss_pred HHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEE-echH
Confidence 346899999999999999999999999999999999999999999999999995 9999999999999999999 9999
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 254 ~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
+|++||.+|+.|.+..+.+.|...|...+ +++|++.+..+|..+++..|....-.++.+|+......++|+
T Consensus 106 nVq~ll~aA~~lQi~~v~~~C~~fL~~~l-~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl 176 (571)
T KOG4441|consen 106 NVQELLEAASLLQIPEVVDACCEFLESQL-DPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFL 176 (571)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhh
Confidence 99999999999999999999999999988 899999999999999999999999988888876655444444
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.7e-18 Score=183.14 Aligned_cols=442 Identities=15% Similarity=0.074 Sum_probs=303.2
Q ss_pred HHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHH
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~ 466 (889)
-.-|+..+..|+|+.|+.+|..|+.+++. .++ .+.+....|...+.| .+|+.
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhv------------------------lySnrsaa~a~~~~~---~~al~ 57 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPT-NHV------------------------LYSNRSAAYASLGSY---EKALK 57 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCC-ccc------------------------hhcchHHHHHHHhhH---HHHHH
Confidence 35688899999999999999999987654 211 112334456667778 99999
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc-------------------
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE------------------- 526 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g------------------- 526 (889)
+-.+.++++|+.+.+|..+|..+...|+|++|+..|.+.|..+| +...+..++..+....
T Consensus 58 da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p 137 (539)
T KOG0548|consen 58 DATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLP 137 (539)
T ss_pred HHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcCh
Confidence 99999999999999999999999999999999999999999999 7777777777762210
Q ss_pred --cHHHHHHHHHHHHH---hCCCCcchhhhHH-HHHHHHHHHHHhhchhHHHHHH-H---hhhhcccccccchHHHHHHH
Q 002716 527 --DYQAALCDVQAILT---LSPDYRMFEGRVA-ASQLHMLVREHIDNWTIADCWL-Q---LYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 527 --~~~~A~~~~~~al~---~~p~~~~~~~~~~-a~~~lg~~~~~~~~~~~A~~~~-~---l~~~~~~~dd~~sl~~~~~a 596 (889)
++-..-..|...+. .+|.+...+.... ....+|.+....-....+.... . .......++.-.-+.+-.+-
T Consensus 138 ~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 138 LTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEE 217 (539)
T ss_pred hhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHH
Confidence 01111123333333 3333332221100 0000111100000000000000 0 00000000000001111110
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
. .........-.+|.......++..|++.|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++..... .-+.
T Consensus 218 ~-~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 218 R-RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred H-HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 0 012233456789999999999999999999999999 888899999999999999999999999998877776 4455
Q ss_pred HHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHH
Q 002716 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV 753 (889)
Q Consensus 676 ~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~ 753 (889)
+++..+...|... .....++.++..|.+.+.. +.-+.+.-.....+++....+...-++|. ..-..-|..
T Consensus 296 lIak~~~r~g~a~----~k~~~~~~ai~~~~kaLte----~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 296 LIAKALARLGNAY----TKREDYEGAIKYYQKALTE----HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE 367 (539)
T ss_pred HHHHHHHHhhhhh----hhHHhHHHHHHHHHHHhhh----hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH
Confidence 5666666654222 2225788888888876433 12255666777888888888888888888 334445899
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH
Q 002716 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 754 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 829 (889)
++..|+|..|+..|+++|..+|+++.+|.+++.. +.+..|+.+.+.+++++|+...+|..-|.++..+.+|++|++
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998883 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 830 ELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRA 866 (889)
Q Consensus 830 ~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~ 866 (889)
.|.++++.+|+.. .......++..+.......+.+++
T Consensus 448 ay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 448 AYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999873 333444444432222333344444
No 41
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=2.6e-17 Score=199.39 Aligned_cols=439 Identities=11% Similarity=-0.043 Sum_probs=341.9
Q ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHcCc----chhHhhHHHHHhhcCCcHHHHHHHhhhhhccC--------cchhHHH
Q 002716 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGH----IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT--------PLGWMYQ 453 (889)
Q Consensus 386 ~~~lG~~~~~~g~~~eA~~~~~~al~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--------~~g~~~~ 453 (889)
|..+-..+...|++++|.+.|+.....+. ......+..++...++...+.+.+..+...-. .+..+|.
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 33444556678888999998888765432 12344455666667777777666655543211 1223444
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A 531 (889)
..+.+ ++|...|++..+ | +...|..+...|.+.|++++|+..|+++++..+ +...+..+...+...|+.+.+
T Consensus 170 k~g~~---~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 170 KCGML---IDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred cCCCH---HHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 44555 888888888754 3 566788999999999999999999999876544 666777777778888999999
Q ss_pred HHHHHHHHHhCCC-CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH
Q 002716 532 LCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (889)
Q Consensus 532 ~~~~~~al~~~p~-~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l 610 (889)
...+..+++..-. +. .++..+...|.+.|++++|.+.| +++ .+.+...|..+
T Consensus 244 ~~l~~~~~~~g~~~d~------~~~n~Li~~y~k~g~~~~A~~vf------------------~~m---~~~~~vt~n~l 296 (697)
T PLN03081 244 QQLHCCVLKTGVVGDT------FVSCALIDMYSKCGDIEDARCVF------------------DGM---PEKTTVAWNSM 296 (697)
T ss_pred HHHHHHHHHhCCCccc------eeHHHHHHHHHHCCCHHHHHHHH------------------HhC---CCCChhHHHHH
Confidence 9988887765421 22 36777889999999999997777 544 34577889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHcCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~a~~~la~~~~~~~~~ 687 (889)
...|.+.|++++|+..|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.. |+...+..+...|...|
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-- 374 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-- 374 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC--
Confidence 999999999999999999987653 2246788889999999999999999999998875 33377888999999999
Q ss_pred CCcchhhhhhHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHcc--Ccc-hHHHHHHHHHHHcCCHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~--~p~-~a~~~La~~~~~~g~~~~A 763 (889)
.+++|.+.+.....+ ..+|+.+...|...|+.++|++.|++..+. .|+ .++..+...+...|..++|
T Consensus 375 ---------~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 375 ---------RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred ---------CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 999999999988655 678999999999999999999999998764 466 7888899999999999999
Q ss_pred HHHHHHHHHHhc--cCHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002716 764 YEEMTKLIKKAR--NNASAYE----KRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 837 (889)
Q Consensus 764 ~~~~~~al~~~~--~~~~~~~----~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 837 (889)
.+.++...+... ++...|. ..+..|+.++|.+.+++. ...| +...|..+...+...|+++.|...++++++.
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 999999987543 3333333 333348999999998765 2334 4567889999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 838 KADL-HLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 838 ~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
.|+. ..+..+..+|...|++++|.+.++...+.
T Consensus 524 ~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9985 45567777888889999999999987754
No 42
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=1.5e-17 Score=206.21 Aligned_cols=446 Identities=13% Similarity=0.011 Sum_probs=308.5
Q ss_pred HhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhcc-Ccchh-------HHHHHhhcC
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV-TPLGW-------MYQERSLYC 459 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~g~-------~~~~~~~~~ 459 (889)
.|-..|.+.|++++|.+.|++.... ...++..+...+...|+..+|++.+..+.... .+... .+...+..
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~- 304 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE- 304 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-
Confidence 3445566677777777777665432 23345555666677777777777666654331 11111 11222222
Q ss_pred ChhHHHHHHHHhhhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 460 EGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 460 ~~~~A~~~~~~al~~d-p~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+.|.+.+..+.+.. +.+...|..+...|.+.|++++|.+.|++.. .|+...+..+...|.+.|++++|+..|++.
T Consensus 305 --~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 --RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred --HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555555554432 2345667777777777777777777777754 245556666677777777777777777776
Q ss_pred HHh--CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC-CChHHHHHHHHHHH
Q 002716 539 LTL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-PKGVLYFRQSLLLL 615 (889)
Q Consensus 539 l~~--~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p-~~~~~~~~la~~~~ 615 (889)
... .|+.. .+..+-..+...|++++|.+.+ ..+.+... .+..++..+...|.
T Consensus 381 ~~~g~~Pd~~-------t~~~ll~a~~~~g~~~~a~~l~------------------~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 381 EQDNVSPDEI-------TIASVLSACACLGDLDVGVKLH------------------ELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred HHhCCCCCce-------eHHHHHHHHhccchHHHHHHHH------------------HHHHHhCCCcchHHHHHHHHHHH
Confidence 543 35554 3334445666777777776655 66666543 35667788889999
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHcCCCCCcchhh
Q 002716 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSFEAFFLKAYALADSSQDSSCSSTV 694 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~~a~~~la~~~~~~~~~~~~~~~~ 694 (889)
+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|++... ..|+..++..+..++...|
T Consensus 436 k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g--------- 503 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG--------- 503 (857)
T ss_pred HcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhc---------
Confidence 99999999999987643 3456788888889999999999999999875 3455566666666777777
Q ss_pred hhhHHHHhcchhhhCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 695 VSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 695 ~~~~~~Al~~~~~~~~~-----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
.++.+.+.+....+. ...++.+-..|.+.|++++|...|+.. .++ .+|..+...|...|+.++|++.|+
T Consensus 504 --~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 504 --ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred --hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 667766666555222 456677888999999999999999886 455 788889999999999999999999
Q ss_pred HHHHHhc-cCHHHHHHH----HhcCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 769 KLIKKAR-NNASAYEKR----SEYCDRELTRADLEMVTQL---DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 769 ~al~~~~-~~~~~~~~~----~~~~~~~~A~~~l~~al~l---~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
+..+... ++...|... ..-|+.++|...|+...+. .| +...|..+..++.+.|++++|.+.+++. ...|+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 9887532 233333322 2238889999999988743 34 3467888999999999999999999875 57888
Q ss_pred HHHHH-HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 841 LHLLH-LRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 841 ~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
...+. ++..+. ..|+.+.|....+++++++|++....-++..+
T Consensus 657 ~~~~~aLl~ac~-~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 657 PAVWGALLNACR-IHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHHHH-HcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 76666 455444 44899999999999999999988776665443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=5.8e-18 Score=175.78 Aligned_cols=407 Identities=14% Similarity=0.089 Sum_probs=306.8
Q ss_pred HHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHH
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~ 466 (889)
.++|++|+++.+|.+|+++|+-|+..- .+... +.- +....+.|..+...+.| +.|+.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqv--psink-----------~~r-------ikil~nigvtfiq~gqy---~dain 297 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQV--PSINK-----------DMR-------IKILNNIGVTFIQAGQY---DDAIN 297 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhc--cccch-----------hhH-------HHHHhhcCeeEEecccc---hhhHh
Confidence 478999999999999999999998632 22111 111 12234567777778888 99999
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC----------C--C-HHHHHHHHHH--------HHhc
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK----------L--A-LECLELRFCF--------FLAL 525 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~----------p--~-~~~l~~~a~~--------~~~~ 525 (889)
.|+...+..|+...++ ++-.+++..|+-++-.+.|.+.+.+- | + .+.+...+.- -...
T Consensus 298 sfdh~m~~~pn~~a~~-nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k 376 (840)
T KOG2003|consen 298 SFDHCMEEAPNFIAAL-NLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK 376 (840)
T ss_pred hHHHHHHhCccHHhhh-hhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh
Confidence 9999999999887654 67788899999999999999987642 1 1 1222222111 1112
Q ss_pred ccHHHHHHHHHHHHH--hCCCCcchhh--------------hHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch
Q 002716 526 EDYQAALCDVQAILT--LSPDYRMFEG--------------RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 526 g~~~~A~~~~~~al~--~~p~~~~~~~--------------~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
.+-++|+..--+++. +.|+...-.. .......-+.-+.+.|+++.|++.++.+++..
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd------- 449 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD------- 449 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc-------
Confidence 223333333333332 2333321100 00111122344566777777766663333210
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 590 LSVIYQMLESDAPKGVLYFRQSLLLLRL--NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 590 l~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
+.....+-.++..+++.+ .++..|..+...++..+.-++.++.+.|.+.+..|++++|.+.|++++..
T Consensus 450 ----------nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 450 ----------NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred ----------chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 111223344555555553 37889999999999999999999999999999999999999999999998
Q ss_pred CCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 668 KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 668 ~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
+.+. ++.+++|..+..+| .+++|+.+|-+. ++.++++..++.+|..+.+..+|++++.++..+-
T Consensus 520 dasc~ealfniglt~e~~~-----------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sli 588 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALG-----------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI 588 (840)
T ss_pred chHHHHHHHHhcccHHHhc-----------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC
Confidence 8888 99999999999999 999999999886 5568999999999999999999999999999999
Q ss_pred cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 002716 743 HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAA 816 (889)
Q Consensus 743 p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~ 816 (889)
|+ ..+..||.+|-+.|+..+|..++-......|-+......++.| .-.++|+.+|+++.-+.|+........|.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 98 7888899999999999999999999888899877766666664 45789999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCCH-HHHH
Q 002716 817 VLMDSHKENEAIAELSRAIAFKADL-HLLH 845 (889)
Q Consensus 817 ~~~~~g~~~eA~~~l~kal~~~p~~-~~l~ 845 (889)
++.+.|+|.+|...|+..-...|.+ ..+.
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclk 698 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLK 698 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999999999998888885 5544
No 44
>PLN03077 Protein ECB2; Provisional
Probab=99.82 E-value=1.4e-16 Score=197.71 Aligned_cols=440 Identities=9% Similarity=-0.064 Sum_probs=350.1
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCcc---hhHhhHHHHHhhcCCcHHHHHHHhhhhhcc--------CcchhHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSV--------TPLGWMYQ 453 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~g~~~~ 453 (889)
.|..+-..|.+.|++++|++.|++....|.. .....+..++...|+...|.+....++..- ..+-.+|.
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 4666777888999999999999999876532 234445666777888888887776655431 12334566
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcccHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~--~~p~~~~l~~~a~~~~~~g~~~~A 531 (889)
+.+.+ ++|...|++..+ .+...|..+...|.+.|++++|+..|+++.. ..|+...+...-..+...|++++|
T Consensus 335 k~g~~---~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 335 SLGSW---GEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred hcCCH---HHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 66666 899999988653 3567899999999999999999999998754 456666676666788899999999
Q ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002716 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 532 ~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
.+.+..+++...... ..++..+...|.+.|++++|.+.| +++.+ .+...|..+.
T Consensus 409 ~~l~~~~~~~g~~~~-----~~~~n~Li~~y~k~g~~~~A~~vf------------------~~m~~---~d~vs~~~mi 462 (857)
T PLN03077 409 VKLHELAERKGLISY-----VVVANALIEMYSKCKCIDKALEVF------------------HNIPE---KDVISWTSII 462 (857)
T ss_pred HHHHHHHHHhCCCcc-----hHHHHHHHHHHHHcCCHHHHHHHH------------------HhCCC---CCeeeHHHHH
Confidence 999999988754322 147778889999999999997777 55433 3566788899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCCCC
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~a~~~la~~~~~~~~~~~ 689 (889)
..|...|+.++|+..|++.....+.+...+..+-..+...|+.+.+.+.+..+++.... ......+...|...|
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G---- 538 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG---- 538 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC----
Confidence 99999999999999999998765556677777777888999999999999998876433 355667778888889
Q ss_pred cchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc--Ccc-hHHHHHHHHHHHcCCHHHHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKTTAYEE 766 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~--~p~-~a~~~La~~~~~~g~~~~A~~~ 766 (889)
.+++|.+.+........+|+.+...|...|+.++|++.|++..+. .|+ .++..+-..+...|+.++|..+
T Consensus 539 -------~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 539 -------RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred -------CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999888444789999999999999999999999998874 466 6777788889999999999999
Q ss_pred HHHHHHHhc--cCHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 767 MTKLIKKAR--NNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 767 ~~~al~~~~--~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
++...+..+ ++...|..+.. -|+.++|...+++. ...|+ ...|..+-..+...|+.+.|....++++++.|+
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 999986543 34445544443 38999999999876 35554 667888878888899999999999999999999
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 841 L-HLLHLRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 841 ~-~~l~l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
. ..+.+++.+|...|++++|.+..+...+
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 7 4445888899999999999999887754
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=2.4e-17 Score=186.08 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 788 CDRELTRADLEMVTQLDPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~ 865 (889)
|++.+|+..|..++...+. +...|+.+|.+|+..|.+++|+..|++++...|+. .....++.++.++|+.++|.+.++
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 4455555555555554442 34566667777777777777777777777777765 333356666666677777776666
Q ss_pred HHHc
Q 002716 866 AALS 869 (889)
Q Consensus 866 ~al~ 869 (889)
....
T Consensus 508 ~~~~ 511 (895)
T KOG2076|consen 508 QIIN 511 (895)
T ss_pred cccC
Confidence 6553
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=1.4e-16 Score=180.02 Aligned_cols=353 Identities=13% Similarity=0.035 Sum_probs=248.3
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
..+..|..++..|++++|...+..++..+| ++.+++.+|.+|..+|+.++|....-.+-.++|++. .-|..++
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~------e~W~~la 214 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY------ELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh------HHHHHHH
Confidence 455667777777888888888888888888 777777888888888888888877777777788777 6677777
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH- 638 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~- 638 (889)
....++|++++|.-+| .++++.+|.+....++.+.+|.+.|+...|+..|.+++...|...
T Consensus 215 dls~~~~~i~qA~~cy------------------~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~ 276 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCY------------------SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDI 276 (895)
T ss_pred HHHHhcccHHHHHHHH------------------HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhH
Confidence 7777888888886666 788888888877777888888888888888888888887777211
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc-
Q 002716 639 ----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR- 710 (889)
Q Consensus 639 ----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~- 710 (889)
......+..+...++.+.|++.++.++....+- +.+..++.++.... .++.++.......+
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~-----------q~d~~~~~i~~~~~r 345 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNK-----------QSDKALMKIVDDRNR 345 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhH-----------HHHHhhHHHHHHhcc
Confidence 122333555666677777777777777632221 33444444443333 22222222211100
Q ss_pred -------------------------------hhH-HHHHHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHH
Q 002716 711 -------------------------------KGQ-ALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHF 755 (889)
Q Consensus 711 -------------------------------~~~-~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~ 755 (889)
... ....++.+..+.++..+++..+..--...|. ..+..++.++.
T Consensus 346 ~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~ 425 (895)
T KOG2076|consen 346 ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALT 425 (895)
T ss_pred ccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHH
Confidence 022 2555666666666667776666544443344 88899999999
Q ss_pred HcCCHHHHHHHHHHHHHHhc-cCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 756 LKNNKTTAYEEMTKLIKKAR-NNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 756 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
..|++++|+.++..+....+ +++.+|...+.+ +.+++|+..|++++.++|++..+...|+.++.+.|+.++|.+.
T Consensus 426 ~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 426 NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 99999999999999988777 455666666663 8889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 831 LSRAIAFKAD----------LHLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 831 l~kal~~~p~----------~~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
++..+.-++. --....+..++.+.|+.++=+..-...+
T Consensus 506 L~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 506 LEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9987632211 1223356677788899888544444333
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=2.4e-15 Score=163.45 Aligned_cols=437 Identities=15% Similarity=0.072 Sum_probs=273.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcch--hHhhHHHHHhhcCCcHHHHHHHhhhh
Q 002716 365 TVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVI 442 (889)
Q Consensus 365 ~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~ 442 (889)
....++++++.-|++.. +. ..-....+.++|+..+.+|++.-+.. -+..+|+
T Consensus 365 K~RVlRKALe~iP~sv~----LW---KaAVelE~~~darilL~rAveccp~s~dLwlAlar------------------- 418 (913)
T KOG0495|consen 365 KKRVLRKALEHIPRSVR----LW---KAAVELEEPEDARILLERAVECCPQSMDLWLALAR------------------- 418 (913)
T ss_pred HHHHHHHHHHhCCchHH----HH---HHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH-------------------
Confidence 34677888887777643 22 23334456667999999998854332 2222232
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC---CC---CHHH--
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF---KL---ALEC-- 514 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~---~p---~~~~-- 514 (889)
..-| ..|...++++-+.-|++...|..-+.+--..|+.+.-.+.+.+.+.. +. +.+.
T Consensus 419 ------------LetY---enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 419 ------------LETY---ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred ------------HHHH---HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 2233 55555566666666666666666666666666655555555544321 11 2333
Q ss_pred -----------------------------------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 515 -----------------------------------LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 515 -----------------------------------l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
+..-+..+.+.+-++-|...|..+|+.+|... ..|...+
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~------slWlra~ 557 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK------SLWLRAA 557 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh------HHHHHHH
Confidence 33334445555556666666666666666665 3333333
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 639 (889)
..-...|..++-. +.+++++...|.....|...+..+...|+..+|...+.++++.+|++.+
T Consensus 558 ~~ek~hgt~Esl~------------------Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 558 MFEKSHGTRESLE------------------ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHHhcCcHHHHH------------------HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 3333344444332 2336777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----hHHH
Q 002716 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK----GQAL 715 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~----~~~~ 715 (889)
+|+.--.+.....+++.|...|.++....|....|+--+.....++ ..++|++.++.+++. ...|
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld-----------~~eeA~rllEe~lk~fp~f~Kl~ 688 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLD-----------NVEEALRLLEEALKSFPDFHKLW 688 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh-----------hHHHHHHHHHHHHHhCCchHHHH
Confidence 7776666677777777777777777766666665665555555555 555555555554332 4566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CC
Q 002716 716 NNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CD 789 (889)
Q Consensus 716 ~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~ 789 (889)
..+|.++.++++.+.|...|...++.-|. ..|..|+.+-...|+.-.|...++++.-.+|.+..+|.....+ |+
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence 77777777777777777777777777776 6667777777777777777777777777777776666655442 67
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 790 RELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 790 ~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
.++|.....+|++--|+....|..--...-.-++-..++..+++. ..|+.++...+..+....++++|.++|.++++
T Consensus 769 ~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc---e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc---cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777777777777776666554444444444444555544442 34445566566666666899999999999999
Q ss_pred cCCCCHHHHHH
Q 002716 870 VDPNDQEMLEL 880 (889)
Q Consensus 870 l~P~~~~~l~l 880 (889)
.+|++.++.-.
T Consensus 846 ~d~d~GD~wa~ 856 (913)
T KOG0495|consen 846 KDPDNGDAWAW 856 (913)
T ss_pred cCCccchHHHH
Confidence 99999887643
No 48
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.80 E-value=2.3e-16 Score=191.15 Aligned_cols=408 Identities=9% Similarity=-0.022 Sum_probs=315.4
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHcCc---chhHhhHHHHHhhcCCcHHHHHHHhhhhhc----cCcchhHHHHHhh
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISS----VTPLGWMYQERSL 457 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~g~~~~~~~~ 457 (889)
.+..+-..+...++++.|.+.+......|. ......+...|.+.|+.+.|.+.+..+... +..+-..|...+.
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 344555566677888888888887777552 233445667788888888888887776542 1123344555566
Q ss_pred cCChhHHHHHHHHhhhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhcccHHHHHHH
Q 002716 458 YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDYQAALCD 534 (889)
Q Consensus 458 ~~~~~~A~~~~~~al~~dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~--p~~~~l~~~a~~~~~~g~~~~A~~~ 534 (889)
+ ++|+..|++..+..+ .+..+|..+...+...|..+.+.+....+++.. |+..++..+...|.+.|++++|...
T Consensus 205 ~---~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 281 (697)
T PLN03081 205 Y---REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281 (697)
T ss_pred H---HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH
Confidence 6 888888888876543 234566677777888899998888877776543 4777777788899999999999999
Q ss_pred HHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC-CCChHHHHHHHHH
Q 002716 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLL 613 (889)
Q Consensus 535 ~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~-p~~~~~~~~la~~ 613 (889)
|++.. +.+. .+|..+...|.+.|++++|...| +++.+.. ..+...+..+...
T Consensus 282 f~~m~---~~~~------vt~n~li~~y~~~g~~~eA~~lf------------------~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 282 FDGMP---EKTT------VAWNSMLAGYALHGYSEEALCLY------------------YEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred HHhCC---CCCh------hHHHHHHHHHHhCCCHHHHHHHH------------------HHHHHcCCCCCHHHHHHHHHH
Confidence 98763 2333 57888889999999999997777 7776543 3356678888889
Q ss_pred HHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcch
Q 002716 614 LLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~ 692 (889)
+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|.+.|++..+ |+..+|..+...|...|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G------- 405 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHG------- 405 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcC-------
Confidence 999999999999999988876 45677888899999999999999999998753 54578888999999998
Q ss_pred hhhhhHHHHhcchhhhC----ch-hHHHHHHHHHHHHcCChHHHHHHHHHHHcc---Ccc-hHHHHHHHHHHHcCCHHHH
Q 002716 693 TVVSLLEDALKCPSDRL----RK-GQALNNLGSVYVDCGQLDLAADCYSNALKI---RHT-RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~----~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~---~p~-~a~~~La~~~~~~g~~~~A 763 (889)
..++|++.+++.. .+ ..++..+...+...|+.++|..+|+...+. .|+ ..|..+...+.+.|+.++|
T Consensus 406 ----~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 406 ----RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred ----CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 8888888888762 23 667888889999999999999999998753 465 6788899999999999999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002716 764 YEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 837 (889)
Q Consensus 764 ~~~~~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 837 (889)
.+.+++.- .. ++...|..+.. .|+.+.|...+++.++++|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 482 ~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 482 YAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99887641 12 34444444333 389999999999999999999999999999999999999999999987644
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=7.8e-17 Score=182.03 Aligned_cols=291 Identities=15% Similarity=0.006 Sum_probs=180.5
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh
Q 002716 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (889)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~ 598 (889)
|.+.+..|+++.|.+...++.+..|+.. ..+.+.+.++...|+++.|..++ .++.+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~~~~------~~~llaA~aa~~~g~~~~A~~~l------------------~~a~~ 146 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAAEPV------LNLIKAAEAAQQRGDEARANQHL------------------EEAAE 146 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHH
Confidence 4455555555555555555555555444 33444455555555555555555 55555
Q ss_pred cCCCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHH
Q 002716 599 SDAPKG-VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL 676 (889)
Q Consensus 599 ~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~ 676 (889)
..|++. .+....+.++...|++++|...++...+..|+++.++..++.++...|++++|.+.+.+..+..... ..+..
T Consensus 147 ~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~ 226 (409)
T TIGR00540 147 LAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFAD 226 (409)
T ss_pred hCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555543 2344456666666666666666666666666666666666666666666666666666666543222 10000
Q ss_pred HHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHH
Q 002716 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGL 750 (889)
Q Consensus 677 la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~L 750 (889)
+- . ..+.-....+..+++.+.+.++.+..|. ..+..+
T Consensus 227 l~-~------------------------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 227 LE-Q------------------------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HH-H------------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 00 0 0000001112222233344444443331 455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCHH----HHHHHHhc--CCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHhCC
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNAS----AYEKRSEY--CDRELTRADLEMVTQLDPLRV--YPYRYRAAVLMDSH 822 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~--~~~~~A~~~l~~al~l~p~~~--~~~~~la~~~~~~g 822 (889)
|..+...|++++|.+.++++++..|++.. .+...... ++.+.+...++++++.+|+++ .....+|+++.+.|
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcc
Confidence 66666666666666666666666665542 22222222 566788999999999999999 88999999999999
Q ss_pred CHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 823 KENEAIAELS--RAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 823 ~~~eA~~~l~--kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
++++|.++|+ ++++..|++..+..++.++.++|+.++|.+.|++++..
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999 68889999877778899999999999999999998764
No 50
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=1.8e-15 Score=185.26 Aligned_cols=338 Identities=12% Similarity=-0.006 Sum_probs=173.3
Q ss_pred HHHhcccHHHHHHHHHHHHHcCcch----hHhhHHHHHhhcCCcHHHHHHHhhhhhccCc------chhHHHHHhhcCCh
Q 002716 392 VRLLRKEYDEAEHLFEAAVNAGHIY----SIAGLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQERSLYCEG 461 (889)
Q Consensus 392 ~~~~~g~~~eA~~~~~~al~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~g~~~~~~~~~~~~ 461 (889)
.+.+.|++++|.+.|+.....+... ....+...+...|....|+..+..+.. ++ +-..+...+.+
T Consensus 379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~LL~a~~k~g~~--- 453 (1060)
T PLN03218 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNMLMSVCASSQDI--- 453 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCcCH---
Confidence 4557899999999999987765321 112233445556666666655543332 11 01112222233
Q ss_pred hHHHHHHHHhhhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGF--KLALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~~~~al~~dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~--~p~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
++|...+++..+... .+...|..+-..|.+.|+.++|...|+++... .|+...+..+...|.+.|++++|+..|+..
T Consensus 454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 555555555544332 23444555555555555555555555555433 235555555555555555555555555555
Q ss_pred HHh--CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc----CCCChHHHHHHHH
Q 002716 539 LTL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSL 612 (889)
Q Consensus 539 l~~--~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~----~p~~~~~~~~la~ 612 (889)
... .|+. ..+..+...+.+.|++++|.+.+ .++... .| +...|..+..
T Consensus 534 ~~~Gv~PD~-------vTYnsLI~a~~k~G~~deA~~lf------------------~eM~~~~~gi~P-D~vTynaLI~ 587 (1060)
T PLN03218 534 RSKNVKPDR-------VVFNALISACGQSGAVDRAFDVL------------------AEMKAETHPIDP-DHITVGALMK 587 (1060)
T ss_pred HHcCCCCCH-------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhcCCCCC-cHHHHHHHHH
Confidence 432 2332 24555555555555555554444 444331 22 2344555555
Q ss_pred HHHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHcCCCCC
Q 002716 613 LLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~a~~~la~~~~~~~~~~~ 689 (889)
.|.+.|++++|.+.|+...+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+...+..+...+...+
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G---- 663 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG---- 663 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----
Confidence 5555555555555555555543 233445555555555555555555555555543 344444445555555555
Q ss_pred cchhhhhhHHHHhcchhhhCc----h-hHHHHHHHHHHHHcCChHHHHHHHHHHHcc--Ccc-hHHHHHHHHHHHcCCHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLR----K-GQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~----~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~--~p~-~a~~~La~~~~~~g~~~ 761 (889)
.+++|.+.+..... + ..+|+.+...|.+.|++++|...|++..+. .|+ ..|..+...|...|+++
T Consensus 664 -------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e 736 (1060)
T PLN03218 664 -------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736 (1060)
T ss_pred -------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45555555444421 1 345555555555555555555555554332 333 44555555555555555
Q ss_pred HHHHHHHHHH
Q 002716 762 TAYEEMTKLI 771 (889)
Q Consensus 762 ~A~~~~~~al 771 (889)
+|++.++++.
T Consensus 737 eAlelf~eM~ 746 (1060)
T PLN03218 737 KALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 51
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.80 E-value=2e-15 Score=184.91 Aligned_cols=373 Identities=10% Similarity=-0.025 Sum_probs=290.4
Q ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhh
Q 002716 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNS 440 (889)
Q Consensus 361 ~~~~~v~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 440 (889)
+...+..+++.+.+...-++.. ..+..+-..+...|..++|...|+.... ........+-.++...|+.+.|.+.+..
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~-v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDK-IYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3355666666665433222221 1222334456678899999998877654 2334455566778888999999888877
Q ss_pred hhhccC-c-------chhHHHHHhhcCChhHHHHHHHHhhhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHc--CC
Q 002716 441 VISSVT-P-------LGWMYQERSLYCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILG--FK 509 (889)
Q Consensus 441 ~~~~~~-~-------~g~~~~~~~~~~~~~~A~~~~~~al~~dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~--~~ 509 (889)
+..... + +-.+|...+.. ++|...|++..+... .+...|..+...|.+.|++++|+..|+++.. ..
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~v---d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKV---DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 765321 1 22344455555 889999998887653 2678899999999999999999999999865 45
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccccc
Q 002716 510 LALECLELRFCFFLALEDYQAALCDVQAILTL----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVD 585 (889)
Q Consensus 510 p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~d 585 (889)
|+...+..+...|.+.|++++|...+.++... .|+.. .+..+...|.+.|++++|.+.|
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------TynaLI~ay~k~G~ldeA~elf---------- 602 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------TVGALMKACANAGQVDRAKEVY---------- 602 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------HHHHHHHHHHHCCCHHHHHHHH----------
Confidence 68888999999999999999999999998763 45543 6777888899999999997777
Q ss_pred ccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002716 586 DIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 586 d~~sl~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 662 (889)
+++.+.+ +.+...|..+...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|++++|.+.++
T Consensus 603 --------~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 603 --------QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred --------HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7777766 556788899999999999999999999998876 454 6678888899999999999999999
Q ss_pred HHHhcC--CChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----Cch-hHHHHHHHHHHHHcCChHHHHHHH
Q 002716 663 ESIQMK--RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRK-GQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 663 ~al~~~--p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~-~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
++.+.. |+...+..+...+...| .+++|.+.+... ..+ ...|+.+...|.+.|++++|.+.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G-----------~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAK-----------NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 998754 55588889999999999 899999998876 223 678999999999999999999999
Q ss_pred HHHHcc--Ccc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 736 SNALKI--RHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 736 ~~al~~--~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
++.... .|+ ..+..+...+...|++++|...+.++++...
T Consensus 743 ~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 987754 466 7788888999999999999999999987654
No 52
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.80 E-value=6.7e-16 Score=171.76 Aligned_cols=398 Identities=15% Similarity=0.043 Sum_probs=303.2
Q ss_pred HHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC--C-CHHHHHH-HHHHHHhcccH
Q 002716 453 QERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--L-ALECLEL-RFCFFLALEDY 528 (889)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~--p-~~~~l~~-~a~~~~~~g~~ 528 (889)
...+.+ ..+.+.|++++..--.....|+.++..|...|.-..|+..+++.+... | ++..+.. -..++...|.+
T Consensus 334 ~~~g~f---~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ 410 (799)
T KOG4162|consen 334 SRCGQF---EVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLV 410 (799)
T ss_pred HHHHHH---HHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhh
Confidence 345666 888888999988877888899999999999999999999999999888 5 3444333 34556678999
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhc----hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN----WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~----~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~ 604 (889)
++++.+.++++...-... ......++..+|.+|...-. +.+=..+ +..++..++++++.+|.|+
T Consensus 411 eegldYA~kai~~~~~~~-~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~-----------h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQR-SHLKPRGYLFLGIAYGFQARQANLKSERDAL-----------HKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred hhHHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhHhhcCCChHHHHHH-----------HHHHHHHHHHHHhcCCCCc
Confidence 999999999998442111 11112577788887754321 1111000 1224666799999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 682 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~ 682 (889)
.+.+.++.-|..+++.+.|+.+.+++++. ..+++.+|..++.++...+++.+|+...+.++.-.|++ ........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 45678999999999999999999999999999877775 32222222222
Q ss_pred HcCCCCCcchhhhhhHHHHhcchhhhCc-------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHcc--------
Q 002716 683 DSSQDSSCSSTVVSLLEDALKCPSDRLR-------------KGQALNNLGSVYVDCGQLDLAADCYSNALKI-------- 741 (889)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~Al~~~~~~~~-------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~-------- 741 (889)
..+ ..++++......+. .......-+......++..+|.+.+.++...
T Consensus 559 ~~~-----------~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 559 TFN-----------DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hcc-----------cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 222 44444444433311 1111111222233334555555555444321
Q ss_pred -------------Ccc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHH
Q 002716 742 -------------RHT-------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADL 797 (889)
Q Consensus 742 -------------~p~-------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l 797 (889)
.|+ ..|...|.++...++.++|...+.++-...|-..+.|+.+|.. |+..+|...|
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 111 4667788999999999999999999999999999999998873 8999999999
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH--HHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 798 EMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA--ELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 798 ~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~--~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
..|+.++|+++.....+|.++.+.|+..-|.. .+..+++++|++ ..|+.+|.++.++||.+.|...|..|+++++.+
T Consensus 708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999998888877 999999999996 777789999999999999999999999999988
Q ss_pred HH
Q 002716 875 QE 876 (889)
Q Consensus 875 ~~ 876 (889)
|.
T Consensus 788 PV 789 (799)
T KOG4162|consen 788 PV 789 (799)
T ss_pred Cc
Confidence 74
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.78 E-value=2.3e-15 Score=167.56 Aligned_cols=405 Identities=13% Similarity=0.029 Sum_probs=298.4
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHc--CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCC
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (889)
+..|-.|.......|+|..+.+.|++++.. +....+..++-.+..-|.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~------------------------------ 372 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS------------------------------ 372 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc------------------------------
Confidence 345666777777889999999999999753 222222223322222222
Q ss_pred hhHHHHHHHHhhhcC--CCChhhHHHHHHHH-HhccCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhc------
Q 002716 461 GDKRWEDLDKATALD--PTLSYPYMYRASSL-MTKQNVEAALAEINRILGFKL------ALECLELRFCFFLAL------ 525 (889)
Q Consensus 461 ~~~A~~~~~~al~~d--p~~~~a~~~la~~~-~~~g~~~~Al~~l~kal~~~p------~~~~l~~~a~~~~~~------ 525 (889)
...|+..+++..... |.++..++.-+.++ -+.|.+++++.+..+++..-. .+.++...|.+|..+
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 256777777777776 77788877776655 467889999999999987321 556677777776433
Q ss_pred -----ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC
Q 002716 526 -----EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD 600 (889)
Q Consensus 526 -----g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~ 600 (889)
....++++.++++++.+|+++ .+.+.++.-|...++.+.|.... .++++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp------~~if~lalq~A~~R~l~sAl~~~------------------~eaL~l~ 508 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDP------LVIFYLALQYAEQRQLTSALDYA------------------REALALN 508 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCc------hHHHHHHHHHHHHHhHHHHHHHH------------------HHHHHhc
Confidence 235678899999999999999 88899999999999999996666 9999984
Q ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHH--
Q 002716 601 -APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFL-- 676 (889)
Q Consensus 601 -p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~-- 676 (889)
..++..|..++.++...+++.+|+...+.++...|+|.........+-...|+.++|+......+.+=... .+...
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 46678899999999999999999999999999999888877777777777899999988877766432211 00000
Q ss_pred HHHHHHH---cCCCCCcchhhhhhHHHHh----------------cchhhhCch-------hHHHHHHHHHHHHcCChHH
Q 002716 677 KAYALAD---SSQDSSCSSTVVSLLEDAL----------------KCPSDRLRK-------GQALNNLGSVYVDCGQLDL 730 (889)
Q Consensus 677 la~~~~~---~~~~~~~~~~~~~~~~~Al----------------~~~~~~~~~-------~~~~~~Lg~~y~~~g~~~~ 730 (889)
.+..... .+....+...+.+....+. ..+.....+ ...|...+..+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 1111100 0000000001111111111 000000111 3567788899999999999
Q ss_pred HHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHH--HHHHHHh
Q 002716 731 AADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRA--DLEMVTQ 802 (889)
Q Consensus 731 A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~--~l~~al~ 802 (889)
|..|+.++-.+.|. ..++..|.++..+|++.+|...|..++..+|+........+.. |+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999998 8889999999999999999999999999999988887777773 76666666 9999999
Q ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 803 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 803 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
+||.+..+|+++|.++.+.|+.++|..+|.-++++.+..
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999988764
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=2.4e-15 Score=169.02 Aligned_cols=243 Identities=13% Similarity=-0.023 Sum_probs=156.4
Q ss_pred HHHHhcCCCChHH-HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-
Q 002716 594 YQMLESDAPKGVL-YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 594 ~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
.++.+.+|++... ....+.++...|++++|...++++.+.+|+++.++..++.+|...|++++|++.+.+..+..+..
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 5555555555322 22336666666666666666666666666666666666666666666666666666655443332
Q ss_pred H-HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHH
Q 002716 672 E-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQ 748 (889)
Q Consensus 672 ~-a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~ 748 (889)
+ ....... ++..+........+-+...+.++..-+..|+ .+..
T Consensus 222 ~~~~~l~~~----------------------------------a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~ 267 (398)
T PRK10747 222 EHRAMLEQQ----------------------------------AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQV 267 (398)
T ss_pred HHHHHHHHH----------------------------------HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHH
Confidence 1 0000000 1111111111111222222222222222222 5556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHH
Q 002716 749 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE--YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826 (889)
Q Consensus 749 ~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 826 (889)
.+|..+...|+.++|.+.++++++. +.+.......+. .++.++++..+++.++.+|+++..+..+|.++...|++++
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 6666777777777777777777663 334433333333 2677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 827 AIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 827 A~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
|...|+++++..|+...+..++.++..+|+.++|.+.|++++.+.
T Consensus 347 A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999887789999999999999999999998864
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=1.7e-16 Score=186.02 Aligned_cols=200 Identities=13% Similarity=-0.017 Sum_probs=178.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhc---------cCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---------QNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~---------g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A 531 (889)
++|+..|+++++++|+++.+|..+|.++... +++++|+..+++++..+| ++.++..+|.++...|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 7899999999999999999999999887643 448999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002716 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 532 ~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
+..|+++++++|++. .+++.+|.++...|++++|+.++ +++++.+|.++..+..++
T Consensus 358 ~~~~~~Al~l~P~~~------~a~~~lg~~l~~~G~~~eAi~~~------------------~~Al~l~P~~~~~~~~~~ 413 (553)
T PRK12370 358 SLLFKQANLLSPISA------DIKYYYGWNLFMAGQLEEALQTI------------------NECLKLDPTRAAAGITKL 413 (553)
T ss_pred HHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhcCCCChhhHHHHH
Confidence 999999999999999 89999999999999999997777 999999999988877777
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcC
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS 685 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~ 685 (889)
.++...|++++|+..+++++... |+++.++..+|.++...|++++|...+++.....|+. .+...++..+...+
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 78888999999999999999875 7889999999999999999999999999988777776 55555555555444
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.75 E-value=4.5e-16 Score=182.43 Aligned_cols=261 Identities=13% Similarity=-0.016 Sum_probs=197.4
Q ss_pred HHHHHHHHHHh---cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhh---------chhHHHHHHHhhhhc
Q 002716 514 CLELRFCFFLA---LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID---------NWTIADCWLQLYDRW 581 (889)
Q Consensus 514 ~l~~~a~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~---------~~~~A~~~~~l~~~~ 581 (889)
.++++|..+.. .+++++|+..|+++++++|++. .++..+|.++...+ ++++|...+
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a------~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~------ 327 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI------APYCALAECYLSMAQMGIFDKQNAMIKAKEHA------ 327 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHcCCcccchHHHHHHHHH------
Confidence 45666765433 4578899999999999999998 78888888776543 367786666
Q ss_pred ccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 002716 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA 661 (889)
Q Consensus 582 ~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 661 (889)
+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+
T Consensus 328 ------------~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 328 ------------IKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred ------------HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 662 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 662 ~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
+++++++|.+. ..+..++.++...|++++|+.++++++..
T Consensus 396 ~~Al~l~P~~~----------------------------------------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 396 NECLKLDPTRA----------------------------------------AAGITKLWITYYHTGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHhcCCCCh----------------------------------------hhHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 99999999872 01222333455678999999999999877
Q ss_pred C-cc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002716 742 R-HT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVL 818 (889)
Q Consensus 742 ~-p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 818 (889)
. |+ .++..+|.++...|++++|...+.++. ...|....+...++.+|
T Consensus 436 ~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~------------------------------~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS------------------------------TQEITGLIAVNLLYAEY 485 (553)
T ss_pred ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh------------------------------hccchhHHHHHHHHHHH
Confidence 5 44 667889999999999966666655543 34455555666677777
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 819 MDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 819 ~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
...| ++|...+++.++..-.. ........+|.-.|+.+.|..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7666 36666666654432221 1112355666666777777666 6665543
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.5e-15 Score=154.41 Aligned_cols=387 Identities=13% Similarity=0.008 Sum_probs=257.8
Q ss_pred hhhHHHhcccHHHHHHHHHHHHHcCcc-hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchh--HHHHHhhcCChhHHH
Q 002716 389 LGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW--MYQERSLYCEGDKRW 465 (889)
Q Consensus 389 lG~~~~~~g~~~eA~~~~~~al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~A~ 465 (889)
.+..|-..|+-+.|+....+...-... .....+++.+..-++...+.-....++..-+ +|. +-...+.--.|.+--
T Consensus 103 ~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp-~aL~~i~~ll~l~v~g~e~~ 181 (564)
T KOG1174|consen 103 AAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP-MALQVIEALLELGVNGNEIN 181 (564)
T ss_pred HHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc-hHHHHHHHHHHHhhcchhhh
Confidence 334444556667777665444322211 1233455555555554433333333332211 111 100111111112222
Q ss_pred HHHHHhhhcCCCChhhHHHH-HHHHHhccCHHHHHHH--HHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 466 EDLDKATALDPTLSYPYMYR-ASSLMTKQNVEAALAE--INRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 466 ~~~~~al~~dp~~~~a~~~l-a~~~~~~g~~~~Al~~--l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
..-..++..+|.+++.+..+ +...+..++...|... +-.-...-| +.+.+...|.+++..|++++|+..|+++.-+
T Consensus 182 S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~ 261 (564)
T KOG1174|consen 182 SLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA 261 (564)
T ss_pred hhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC
Confidence 22334567778887766543 4444555555555444 444455556 8888899999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
+|... .+.-..|.+....|+++.-..+. ...+..+.....-|+--+..++..++++
T Consensus 262 dpy~i------~~MD~Ya~LL~~eg~~e~~~~L~------------------~~Lf~~~~~ta~~wfV~~~~l~~~K~~~ 317 (564)
T KOG1174|consen 262 NPDNV------EAMDLYAVLLGQEGGCEQDSALM------------------DYLFAKVKYTASHWFVHAQLLYDEKKFE 317 (564)
T ss_pred Chhhh------hhHHHHHHHHHhccCHhhHHHHH------------------HHHHhhhhcchhhhhhhhhhhhhhhhHH
Confidence 99998 78778888888899988876666 6677777777778888888889999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHH
Q 002716 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLED 700 (889)
Q Consensus 622 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~ 700 (889)
.|+.+-+++++.+|.+.+++...|.++...|+.++|+-.|+.|+.+.|.. +.|..+...|...+ .+.+
T Consensus 318 rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~-----------~~kE 386 (564)
T KOG1174|consen 318 RALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK-----------RFKE 386 (564)
T ss_pred HHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc-----------hHHH
Confidence 99999999999999999999999999999999999999999999998887 77777777777766 5555
Q ss_pred Hhcchhhh----CchhHHHHHHH-HHH-HHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002716 701 ALKCPSDR----LRKGQALNNLG-SVY-VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (889)
Q Consensus 701 Al~~~~~~----~~~~~~~~~Lg-~~y-~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~ 772 (889)
|....... .+.+.++..+| .+. ..-.--++|.+.+++++.++|. .+-..+|.++...|.++.++.++++.+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 55444433 22244555554 222 2233346777777777777777 5666677777777777666555555554
Q ss_pred HhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH
Q 002716 773 KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH 842 (889)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~ 842 (889)
..| + ...+..+|+++...+.+++|+..|..|+.++|++.
T Consensus 467 ~~~------------------------------D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 467 IFP------------------------------D-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hcc------------------------------c-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 444 2 34667788888888888888888888888888763
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.3e-16 Score=165.39 Aligned_cols=292 Identities=18% Similarity=0.157 Sum_probs=212.9
Q ss_pred ccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q 002716 444 SVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFF 522 (889)
Q Consensus 444 ~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~ 522 (889)
.....|..+.....| ..|+..|..||+..|+++..|..++..++..|+|++|.-..++.++++| ........+.++
T Consensus 51 ~~k~~gn~~yk~k~Y---~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTY---GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHhhcchHHHHhhH---HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 344466777777777 7888888888888888877788888888888888888888888888877 555666667777
Q ss_pred HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--
Q 002716 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-- 600 (889)
Q Consensus 523 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~-- 600 (889)
...++..+|...++ +. .++ ....| +..+++.+...
T Consensus 128 ~a~~~~i~A~~~~~--------~~------~~~-----------~~ana------------------l~~~~~~~~s~s~ 164 (486)
T KOG0550|consen 128 LALSDLIEAEEKLK--------SK------QAY-----------KAANA------------------LPTLEKLAPSHSR 164 (486)
T ss_pred hhhHHHHHHHHHhh--------hh------hhh-----------HHhhh------------------hhhhhcccccccC
Confidence 77777777776666 11 111 01111 11112222222
Q ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 002716 601 -APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 601 -p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
|.-..+...-+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+.+|++++.++|+. .+-
T Consensus 165 ~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk---- 240 (486)
T KOG0550|consen 165 EPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK---- 240 (486)
T ss_pred CchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH----
Confidence 33344556778999999999999999999999999999999999999999999999999999999999998 311
Q ss_pred HHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHH
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLAR 752 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~ 752 (889)
.... .++....+..-|+-.+..|++.+|.++|..+|.++|. ..|.++|.
T Consensus 241 ~~~~-------------------------~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~ 295 (486)
T KOG0550|consen 241 SASM-------------------------MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRAL 295 (486)
T ss_pred hHhh-------------------------hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHh
Confidence 1100 0112246777889999999999999999999999998 56777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 002716 753 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 832 (889)
+....|+. .+|+.+...++.+||....++..+|.++...+++++|++.|+
T Consensus 296 v~~rLgrl------------------------------~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 296 VNIRLGRL------------------------------REAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred hhcccCCc------------------------------hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887 555556666666666666666666666666677777777777
Q ss_pred HHHhcCCC
Q 002716 833 RAIAFKAD 840 (889)
Q Consensus 833 kal~~~p~ 840 (889)
++++...+
T Consensus 346 ~a~q~~~s 353 (486)
T KOG0550|consen 346 KAMQLEKD 353 (486)
T ss_pred HHHhhccc
Confidence 76665544
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.5e-17 Score=178.61 Aligned_cols=257 Identities=17% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFK--L-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~--p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
.+|.+++..|++++|++.+.+.+... | +...+..+|.+....++++.|+..|++++..++.++ ..+..++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~------~~~~~l~~ 86 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP------QDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccc
Confidence 55778888888888888886554433 4 677777777777788888888888888887777766 44444555
Q ss_pred HHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCcH
Q 002716 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--ASDH 638 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~ 638 (889)
+ ...+++++|...+ .++.+.. .++..+.....++...|+++++...++++.... +.++
T Consensus 87 l-~~~~~~~~A~~~~------------------~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 146 (280)
T PF13429_consen 87 L-LQDGDPEEALKLA------------------EKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA 146 (280)
T ss_dssp ---------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-H
T ss_pred c-ccccccccccccc------------------ccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH
Confidence 5 5677777775555 5555444 334555556666777777777777777765544 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHH
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~L 718 (889)
..+..+|.++.+.|+.++|++.|+++++.+|++. .+...+
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~----------------------------------------~~~~~l 186 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDP----------------------------------------DARNAL 186 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------------------------------------HHHHHH
Confidence 7777777777777777777777777777777762 133334
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHH
Q 002716 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRAD 796 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~ 796 (889)
+.++...|+++++...++...+..|+ ..+..+|.++...|++ ++|+..
T Consensus 187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~------------------------------~~Al~~ 236 (280)
T PF13429_consen 187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY------------------------------EEALEY 236 (280)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H------------------------------HHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc------------------------------cccccc
Confidence 44444555555555555444444333 4455566666666666 333344
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
|++++..+|+++..+..+|.++...|+.++|...+.+++.
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 4444444555666666666666666666666666666543
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.74 E-value=5.8e-16 Score=166.72 Aligned_cols=230 Identities=13% Similarity=-0.010 Sum_probs=138.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChH
Q 002716 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~ 605 (889)
+..+.++..+.++|...|..+... ...++.+|.++...|++++|...| +++++.+|+++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~--a~~~~~~g~~~~~~g~~~~A~~~~------------------~~Al~l~P~~~~ 99 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEER--AQLHYERGVLYDSLGLRALARNDF------------------SQALALRPDMAD 99 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhh--HHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHcCCCCHH
Confidence 344555555555554333222111 144556666666666666664444 666666666666
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~ 685 (889)
+++.+|.++...|++++|+..|+++++++|++..++.++|.+++..|++++|++.|+++++++|++....
T Consensus 100 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~---------- 169 (296)
T PRK11189 100 AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA---------- 169 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH----------
Confidence 6666666666667777777777777777776666667777777667777777777777766666652000
Q ss_pred CCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHH
Q 002716 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 686 ~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~ 765 (889)
.|.. +....+++++|+..|+++....+...+. .+.++...|+..++ .
T Consensus 170 ----------------------------~~~~---l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 170 ----------------------------LWLY---LAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-T 216 (296)
T ss_pred ----------------------------HHHH---HHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-H
Confidence 1111 1123456677777776655443322221 34444555555332 1
Q ss_pred HHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 766 EMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.++. +...++.+.++.|....+|+++|.++.+.|++++|+..|+++++.+|.+
T Consensus 217 ~~~~-----------------------~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 217 LMER-----------------------LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHH-----------------------HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2222 2222333445567778899999999999999999999999999999754
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=3.2e-15 Score=168.98 Aligned_cols=281 Identities=12% Similarity=0.041 Sum_probs=215.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--ECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~--~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
+.|.+.+.++.+..|+....+...|.++..+|++++|...++++.+..|+. ......+.++...|++++|...++.++
T Consensus 101 ~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777788888888888888888999999999999999999999888833 455557999999999999999999999
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH----HHHHHHHH
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY----FRQSLLLL 615 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~----~~la~~~~ 615 (889)
+..|+++ .++..++.++...|+|++|...+ .+..+..+.++... ......+.
T Consensus 181 ~~~P~~~------~~l~ll~~~~~~~~d~~~a~~~l------------------~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 181 EMAPRHK------EVLKLAEEAYIRSGAWQALDDII------------------DNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HhCCCCH------HHHHHHHHHHHHHhhHHHHHHHH------------------HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999 89999999999999999997777 66666544333322 12222234
Q ss_pred HhCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHH--HHHHHHHHHcCCCC
Q 002716 616 RLNCPEAAMRSLQLARQHAA----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAF--FLKAYALADSSQDS 688 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~--~~la~~~~~~~~~~ 688 (889)
..+..+++...+..+.+..| +++..+..+|..+...|++++|.+.++++++..|++ ... ..........+
T Consensus 237 ~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~--- 313 (409)
T TIGR00540 237 DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPE--- 313 (409)
T ss_pred HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCC---
Confidence 45555666678888888777 588999999999999999999999999999999988 321 11222212222
Q ss_pred CcchhhhhhHHHHhcchhhhCchh--HHHHHHHHHHHHcCChHHHHHHHH--HHHccCcc-hHHHHHHHHHHHcCCHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRKG--QALNNLGSVYVDCGQLDLAADCYS--NALKIRHT-RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~~--~~~~~Lg~~y~~~g~~~~A~~~~~--~al~~~p~-~a~~~La~~~~~~g~~~~A 763 (889)
......+.++.++ +..+..+ ..+..+|.++...|++++|.++|+ ++++..|+ ..+..+|.++...|+.++|
T Consensus 314 -~~~~~~~~~e~~l---k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 314 -DNEKLEKLIEKQA---KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred -ChHHHHHHHHHHH---HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 1112222222222 2224445 778899999999999999999999 68888888 5677999999999999999
Q ss_pred HHHHHHHHHH
Q 002716 764 YEEMTKLIKK 773 (889)
Q Consensus 764 ~~~~~~al~~ 773 (889)
.+++++++..
T Consensus 390 ~~~~~~~l~~ 399 (409)
T TIGR00540 390 AAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.73 E-value=1.2e-17 Score=179.42 Aligned_cols=256 Identities=16% Similarity=0.156 Sum_probs=111.8
Q ss_pred hhHHHHHhhcCChhHHHHHHHHhh-hc-CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc
Q 002716 449 GWMYQERSLYCEGDKRWEDLDKAT-AL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL 525 (889)
Q Consensus 449 g~~~~~~~~~~~~~~A~~~~~~al-~~-dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~ 525 (889)
+.++...+.+ ++|+..+++.+ .. +|+++..|..+|.+....+++++|+..|++++..++ ++..+..++.+ ...
T Consensus 15 A~~~~~~~~~---~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDY---EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 4455555666 78888886554 44 588899999999999999999999999999999988 77777777777 789
Q ss_pred ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCC
Q 002716 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APK 603 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~ 603 (889)
+++++|+..++++.+.+++.. .+.....++...++++++...+ .++.... |.+
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~-------~l~~~l~~~~~~~~~~~~~~~l------------------~~~~~~~~~~~~ 145 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPR-------YLLSALQLYYRLGDYDEAEELL------------------EKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHH------------------HHHHH-T---T-
T ss_pred ccccccccccccccccccccc-------hhhHHHHHHHHHhHHHHHHHHH------------------HHHHhccCCCCC
Confidence 999999999999988765433 4555667788999999997777 6655444 678
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~ 683 (889)
+..+..+|.++.+.|++++|++.|+++++.+|+++.+...+++++...|+++++.+.++...+..|++
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~------------ 213 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD------------ 213 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH------------
Confidence 88999999999999999999999999999999999999999999999999999887777665433332
Q ss_pred cCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHH
Q 002716 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 684 ~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~ 761 (889)
+..+..+|.+|...|++++|+.+|+++++.+|+ ..+..+|.++...|+.+
T Consensus 214 ----------------------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 214 ----------------------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp ----------------------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred ----------------------------HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 135667888999999999999999999999997 78888999999999999
Q ss_pred HHHHHHHHHHHH
Q 002716 762 TAYEEMTKLIKK 773 (889)
Q Consensus 762 ~A~~~~~~al~~ 773 (889)
+|..++.+++..
T Consensus 266 ~A~~~~~~~~~~ 277 (280)
T PF13429_consen 266 EALRLRRQALRL 277 (280)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999998888653
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.73 E-value=2.9e-15 Score=169.71 Aligned_cols=381 Identities=12% Similarity=0.029 Sum_probs=242.4
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..|...|-+++.+||+...+|..+|.+|..-.+...|.+.|+++.++++ +..+....+..|....+++.|..+.-.+-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 5566666677777777777777777777666666677777777777776 666666666667777777777666444433
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
..|... . ...|..+|..|...++...|+++| +.++..+|.+...|..+|.+|.+.|++
T Consensus 555 ka~a~~---~-k~nW~~rG~yyLea~n~h~aV~~f------------------QsALR~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 555 KAPAFA---C-KENWVQRGPYYLEAHNLHGAVCEF------------------QSALRTDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred hchHHH---H-HhhhhhccccccCccchhhHHHHH------------------HHHhcCCchhHHHHHHHHHHHHhcCce
Confidence 333222 1 123444666666666777776666 667777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--------HHHHHHHHHHHHcCCCCCcch
Q 002716 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--------EAFFLKAYALADSSQDSSCSS 692 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--------~a~~~la~~~~~~~~~~~~~~ 692 (889)
..|++.|.++...+|.+....+..+.+....|.|.+|+..+...+...... +.+...+..+...|....
T Consensus 613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k--- 689 (1238)
T KOG1127|consen 613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK--- 689 (1238)
T ss_pred ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh---
Confidence 777777777777777766666666777777777777777666666543322 222222222222331111
Q ss_pred hhhhhHHHHhcchhhhCc-----hhHHHHHHH-------------------HHHH----HcCCh------HHHHHHHHHH
Q 002716 693 TVVSLLEDALKCPSDRLR-----KGQALNNLG-------------------SVYV----DCGQL------DLAADCYSNA 738 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~~-----~~~~~~~Lg-------------------~~y~----~~g~~------~~A~~~~~~a 738 (889)
...-++++++.+.-.+. ....|..+| .++. .++.. --|.+++-..
T Consensus 690 -avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 690 -AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred -hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 11122222222211100 001111111 1111 11111 2355566655
Q ss_pred HccCcc-hHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHhccCHHHHHHHHhc---CCHHHHHHHHHHHHhcCCC
Q 002716 739 LKIRHT-RAHQGLARVHFL--------KNNKTTAYEEMTKLIKKARNNASAYEKRSEY---CDRELTRADLEMVTQLDPL 806 (889)
Q Consensus 739 l~~~p~-~a~~~La~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~A~~~l~~al~l~p~ 806 (889)
++.... ..|++||.-|+. +.+...|+..+.++++...++...+..++.. |++.-|...|.+.+...|.
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc
Confidence 555444 778888887766 2234578899999999999998888888875 6888899999999999999
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
....|.++|.++.+..+++.|...++++..+.|.+ ..+.-.+.+..+.|+.-+++..+.-.-
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999987 333355677777788888888887633
No 64
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.73 E-value=6.6e-15 Score=166.88 Aligned_cols=425 Identities=15% Similarity=0.045 Sum_probs=313.9
Q ss_pred CCcHHHHHHHhhhhhccCcchhHHHHHhhc----CChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Q 002716 429 GHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINR 504 (889)
Q Consensus 429 g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~k 504 (889)
.+...|+..+-+.+....+.|-+|.-.|.| .+...|..+|++|.++||++..+.-..+..|.+..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 335556666666666666555444444432 2558899999999999999999999999999999999999999877
Q ss_pred HHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhc
Q 002716 505 ILGFKL---ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW 581 (889)
Q Consensus 505 al~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~ 581 (889)
+-+..| ....+..+|-.|...+++..|+..++.+++.+|++. ..|..+|.+|...|.+..|.+.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~------n~W~gLGeAY~~sGry~~AlKvF------ 619 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY------NLWLGLGEAYPESGRYSHALKVF------ 619 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH------HHHHHHHHHHHhcCceehHHHhh------
Confidence 777777 344455599999999999999999999999999999 89999999999999999997777
Q ss_pred ccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHhcCCH
Q 002716 582 SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-------HERLVYEGWILYDTSHC 654 (889)
Q Consensus 582 ~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~~~lg~~~~~~g~~ 654 (889)
.++..++|.+....+..+.+....|+|.+|+..+...+...... ++.+...+..+...|-.
T Consensus 620 ------------~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~ 687 (1238)
T KOG1127|consen 620 ------------TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQ 687 (1238)
T ss_pred ------------hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887665433 44555566666667777
Q ss_pred HHHHHHHHHHHhc-------C-CCh-HHHHHHHHHHHHcCCCCCc-c-----------------hhhhhhHHHHhcchhh
Q 002716 655 EEGLRKAEESIQM-------K-RSF-EAFFLKAYALADSSQDSSC-S-----------------STVVSLLEDALKCPSD 707 (889)
Q Consensus 655 ~eA~~~~~~al~~-------~-p~~-~a~~~la~~~~~~~~~~~~-~-----------------~~~~~~~~~Al~~~~~ 707 (889)
.+|...+++++.. . .++ -.|..++.+..-......+ . .+....+--+.+++..
T Consensus 688 ~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~ 767 (1238)
T KOG1127|consen 688 KKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA 767 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH
Confidence 7777777776642 1 122 2333333222111100000 0 0000011222333333
Q ss_pred hCch---hHHHHHHHHHHHH--------cCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 708 RLRK---GQALNNLGSVYVD--------CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 708 ~~~~---~~~~~~Lg~~y~~--------~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
.+.. ...|++||.-|.. +.+...|+.++.+++++..+ ..|..||.+ ...|++.-|...|-+.+...
T Consensus 768 hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 768 HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 3222 5688999988876 23345799999999998766 788889988 66699999999999999999
Q ss_pred ccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC------CCHHHH
Q 002716 775 RNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK------ADLHLL 844 (889)
Q Consensus 775 ~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~------p~~~~l 844 (889)
|.....|.+.+.. .+.+.|...|.++..++|.+...|...|.+....|+.-++...+....++. |+...+
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 9999888888885 699999999999999999999999999999999999999999988743332 233444
Q ss_pred HHHHHHHHHcCCHHHHHH----------HHHHHHccCCCCHHHH
Q 002716 845 HLRAAFHEHTGDVLGALR----------DCRAALSVDPNDQEML 878 (889)
Q Consensus 845 ~l~a~~~~~~g~~~~A~~----------~~~~al~l~P~~~~~l 878 (889)
...-..+.+.|++++-+. ..++.+.-.|++.-++
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy 970 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAY 970 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHH
Confidence 444455555566555444 3444455667665443
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=6.1e-17 Score=162.51 Aligned_cols=231 Identities=15% Similarity=0.032 Sum_probs=200.6
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~ 563 (889)
.+|++|++.|.+.+|.+.++..+...|.++.+.+++.+|....+...|+..|.+.+...|.+. ..+...+.++.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V------T~l~g~ARi~e 301 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV------TYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh------hhhhhhHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999999988 56667778999
Q ss_pred HhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 002716 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (889)
Q Consensus 564 ~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 643 (889)
.++++++|.+++ +.+++.+|.+.++..-+|..|+..|+++-|+++|++.+++.-.+++.+.+
T Consensus 302 am~~~~~a~~lY------------------k~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~N 363 (478)
T KOG1129|consen 302 AMEQQEDALQLY------------------KLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCN 363 (478)
T ss_pred HHHhHHHHHHHH------------------HHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhh
Confidence 999999997777 99999999999988888888999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHH
Q 002716 644 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 723 (889)
Q Consensus 644 lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~ 723 (889)
+|.+....++++-++..|++++....+. -..+++|+|+|.+..
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~-------------------------------------~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQP-------------------------------------GQAADVWYNLGFVAV 406 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCc-------------------------------------chhhhhhhccceeEE
Confidence 9999999999999999999888543211 011368999999999
Q ss_pred HcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 724 DCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
..|++..|..+|+-++..+++ .++.+||.+-.+.|+.++|..+++.+-...|
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999988887 8899999999999999777777777666666
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=3.4e-16 Score=157.19 Aligned_cols=259 Identities=17% Similarity=0.069 Sum_probs=218.0
Q ss_pred HHHhccCHHHHHHHHHHHHcCC---C--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 488 SLMTKQNVEAALAEINRILGFK---L--------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~---p--------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
+++...+...|-......+..+ | +-.+...+|.||+++|-+.+|.+.++..|+..|.- +.+.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~-------dTfl 260 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-------DTFL 260 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-------hHHH
Confidence 3455566666654444433321 2 22334567999999999999999999999988755 4888
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
+|+.+|.+..+...|+..+ .+.++..|.+...+..++.++..++++++|.++|+.+++.+|.
T Consensus 261 lLskvY~ridQP~~AL~~~------------------~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVI------------------GEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred HHHHHHHHhccHHHHHHHH------------------hhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 9999999999999996666 9999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 637 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
+.++.--+|.-|+.-|+.+-|+.+|++++++.-.+ ++.+.
T Consensus 323 nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s----------------------------------------peLf~ 362 (478)
T KOG1129|consen 323 NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQS----------------------------------------PELFC 362 (478)
T ss_pred cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCC----------------------------------------hHHHh
Confidence 99999999999999999999999999998554322 36889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCc--c---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHH
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRH--T---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 791 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p--~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 791 (889)
|+|.+.+..+++|-++..|++|+.... + +.|+++|.+....|++ .
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~------------------------------n 412 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF------------------------------N 412 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch------------------------------H
Confidence 999999999999999999999998753 3 8999999998888888 6
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 792 LTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 792 ~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.|...|+-++..||++.+++.++|.+-.+.|+.++|..+++.|-...|+.
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 67777777788888888888888888888899999999888888888874
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.3e-14 Score=163.15 Aligned_cols=305 Identities=13% Similarity=0.081 Sum_probs=226.3
Q ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhH--hhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhc
Q 002716 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI--AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 381 ~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
.++...+.-|...+..|+|++|++...++.+..+.... ...+++ ...++.+
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~a---------------------------A~~~g~~ 134 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEA---------------------------AQQRGDE 134 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHH---------------------------HHHCCCH
Confidence 34556678888999999999999888877654322111 111222 2334445
Q ss_pred CChhHHHHHHHHhhhcCCCChhhH-HHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPY-MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 459 ~~~~~A~~~~~~al~~dp~~~~a~-~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
+.|...+.++.+.+|+...+. ...+.++...|++++|+..++++.+..| ++.++..++.+|...|++++|+..+.
T Consensus 135 ---~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 135 ---ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred ---HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 788888999999999986544 4458999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 002716 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (889)
Q Consensus 537 ~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~ 616 (889)
++.+..+.+.....+......++......++ .....+ ...+++..+..|+++.+...++..+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~--~~~~~l--------------~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD--QGSEGL--------------KRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh--cCHHHH--------------HHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 9998776654222211111111111111111 111111 222344445567889999999999999
Q ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhh
Q 002716 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~ 696 (889)
.|+.++|...++++++..| ++......+.+ ..++.+++++..++.++.+|++.
T Consensus 276 ~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~------------------------ 328 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP------------------------ 328 (398)
T ss_pred CCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH------------------------
Confidence 9999999999999999544 55554444444 44899999999999998888873
Q ss_pred hHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 697 ~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
..+..+|.++...|++++|.++|+++++..|+ ..+..++.++...|+.++|..+|++.+...
T Consensus 329 ----------------~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 ----------------LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 35677788889999999999999999999999 667899999999999999999999887653
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=2.8e-15 Score=161.43 Aligned_cols=220 Identities=19% Similarity=0.106 Sum_probs=136.3
Q ss_pred cCHHHHHHHHHHHHcC---CC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhc
Q 002716 493 QNVEAALAEINRILGF---KL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 493 g~~~~Al~~l~kal~~---~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~ 567 (889)
++.+.++..+++++.. +| .+..++.+|.+|...|++++|+..|+++++.+|+++ .+++.+|.++...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~------~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA------DAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHCCC
Confidence 4556666777777653 33 345566777777777777777777777777777776 677777777777777
Q ss_pred hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Q 002716 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (889)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~ 647 (889)
+++|...+ +++++.+|++..++.++|.++...|++++|++.++++++.+|+++...... .+
T Consensus 114 ~~~A~~~~------------------~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l 174 (296)
T PRK11189 114 FDAAYEAF------------------DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YL 174 (296)
T ss_pred HHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HH
Confidence 77775555 777777777777777777777777777777777777777777765322111 22
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHH
Q 002716 648 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYV 723 (889)
Q Consensus 648 ~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~ 723 (889)
....+++++|+..+++++...+.. .+. .+.+....+... . .+.++.+.+.++.. .+...+|+++|.++.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~~~~-~~~-~~~~~~~lg~~~----~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~ 247 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKLDKE-QWG-WNIVEFYLGKIS----E-ETLMERLKAGATDNTELAERLCETYFYLAKYYL 247 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhCCcc-ccH-HHHHHHHccCCC----H-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 334566777777776655432221 111 122222222110 0 01222233222222 122568889999999
Q ss_pred HcCChHHHHHHHHHHHccCcc
Q 002716 724 DCGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p~ 744 (889)
..|++++|+.+|+++++.+|.
T Consensus 248 ~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 248 SLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCc
Confidence 999999999999999988864
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.71 E-value=4.4e-14 Score=154.55 Aligned_cols=363 Identities=18% Similarity=0.100 Sum_probs=266.4
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
.+++.++.-.++.++|.+.++.+++++...| ..+.+.+.|..+..+|+.++|....+.++..|+... ..|+.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwHv~ 81 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWHVL 81 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHHHH
Confidence 3556666677788899999999999998888 888888999999999999999999999999888888 688899
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 638 (889)
|.++....+|++|++++ ..|+..+|+|..++.-++.+..++++++.....-.+.++..|...
T Consensus 82 gl~~R~dK~Y~eaiKcy------------------~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r 143 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCY------------------RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR 143 (700)
T ss_pred HHHHhhhhhHHHHHHHH------------------HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH
Confidence 99999999999998888 889999999999999999999999999988888888888889888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCh------HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh-
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMK---RSF------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR- 708 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---p~~------~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~- 708 (889)
..|...+..+.-.|++..|....+...+.. |+. +.......++...| .+++|++.....
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g-----------~~q~ale~L~~~e 212 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG-----------SLQKALEHLLDNE 212 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHhhh
Confidence 888888888888899998888777766544 443 33334445555555 556666655554
Q ss_pred ---CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhcc------
Q 002716 709 ---LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY-EEMTKLIKKARN------ 776 (889)
Q Consensus 709 ---~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~-~~~~~al~~~~~------ 776 (889)
..+.......|.++...+++++|...|...+..+|+ ..+.++-.++..-.+.-+++ ..|...-+..|.
T Consensus 213 ~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 213 KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 233445566788999999999999999999999999 33444444443233333444 445544444430
Q ss_pred -------CHHH------HHH--------------HHhcCCHHHHHHHHHHHH-------hcC------------CCC--h
Q 002716 777 -------NASA------YEK--------------RSEYCDRELTRADLEMVT-------QLD------------PLR--V 808 (889)
Q Consensus 777 -------~~~~------~~~--------------~~~~~~~~~A~~~l~~al-------~l~------------p~~--~ 808 (889)
.... |.. .+.|.+.... ..+++.+ .-. |-. .
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 0000 000 0111222211 1222221 111 111 3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l 878 (889)
+.++.++.-+-..|+++.|..+++.|+..-|+. +.+...|.++.+.|++++|...+..+-++|-.|.-+-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 456778899999999999999999999999997 5555889999999999999999999999986665443
No 70
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.71 E-value=3.9e-17 Score=172.20 Aligned_cols=157 Identities=22% Similarity=0.358 Sum_probs=141.7
Q ss_pred ccCcccCCCCccccEEEEeCC-----eEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhcc
Q 002716 170 HETVSMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (889)
Q Consensus 170 ~~~~~~~~~~~~~Dv~~~v~~-----~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt 244 (889)
+....+.+++..+||.|+|++ ++|||||.|||..|++|.+||+|++.|+...+|.++| +.|.+|..+|.|+|+
T Consensus 103 er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYs 180 (521)
T KOG2075|consen 103 ERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYS 180 (521)
T ss_pred HhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhc
Confidence 344456789999999999973 5899999999999999999999999999889999996 999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHH
Q 002716 245 GSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERV 324 (889)
Q Consensus 245 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~ 324 (889)
+.+. +.+++++.+|.+|++|....|++.|-..+...++.......+.+.|....-+.|+..|++++..++...+..+.|
T Consensus 181 dev~-~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf 259 (521)
T KOG2075|consen 181 DEVK-LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGF 259 (521)
T ss_pred chhh-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccce
Confidence 9999 999999999999999999999999999999998777677777777999999999999999999998888877777
Q ss_pred HHHhc
Q 002716 325 VEIFS 329 (889)
Q Consensus 325 ~~ll~ 329 (889)
+.+=+
T Consensus 260 ~did~ 264 (521)
T KOG2075|consen 260 CDIDS 264 (521)
T ss_pred eehhh
Confidence 66543
No 71
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.6e-15 Score=154.83 Aligned_cols=354 Identities=14% Similarity=0.070 Sum_probs=254.2
Q ss_pred HHHHhhcCCcHHHHHHHhhhhhccC-------cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccC
Q 002716 422 ARLGYIKGHKLWAYEKLNSVISSVT-------PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN 494 (889)
Q Consensus 422 a~~~~~~g~~~~A~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~ 494 (889)
+..++++..+..|++.+...|...+ +....+...+.| +.|..+.++.++++|....++...+.++...++
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~---~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRF---EEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhH---hhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 3455666667777777776665544 455556666777 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 495 VEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 495 ~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
..+|...++. ..++ ....|+..+++++..+...+ ... .+..+-+.++...+++++|...
T Consensus 133 ~i~A~~~~~~-------~~~~-----------~~anal~~~~~~~~s~s~~p-ac~--~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 133 LIEAEEKLKS-------KQAY-----------KAANALPTLEKLAPSHSREP-ACF--KAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHhhh-------hhhh-----------HHhhhhhhhhcccccccCCc-hhh--HHHHhhhhhhhhcccchhHHHH
Confidence 8888877761 1111 22334444444443322221 111 4566677899999999999555
Q ss_pred HHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH------------HHHH
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------------ERLV 642 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------------~~~~ 642 (889)
- ...+++++.+..+++..|.++...++.+.|+..|++++.++|+.. +.+.
T Consensus 192 a------------------~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 192 A------------------IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred H------------------HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 4 888999999999999999999999999999999999999999754 3466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV 721 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~ 721 (889)
..|.-.++.|++.+|.+.|..+|.++|++ .. .+..|.+++.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-------------------------------------naklY~nra~v 296 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-------------------------------------NAKLYGNRALV 296 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccch-------------------------------------hHHHHHHhHhh
Confidence 78999999999999999999999999997 20 02467888999
Q ss_pred HHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHH
Q 002716 722 YVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEM 799 (889)
Q Consensus 722 y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 799 (889)
....|+..+|+...+.++++++. .++...|.++...++|++|.+.|+++++...+ ......+ .+|...+++
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l------~~A~~aLkk 369 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL------REAQLALKK 369 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH------HHHHHHHHH
Confidence 99999999999999999999999 88889999999999999999999999987764 2221111 333333333
Q ss_pred HHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 800 VTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---------HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 800 al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---------~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
+-.. ..|..+|......... --..+-..+|...|+- ..+...+..|..++|+.++.+.+.-.
T Consensus 370 SkRk-----d~ykilGi~~~as~~e-ikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 370 SKRK-----DWYKILGISRNASDDE-IKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred hhhh-----hHHHHhhhhhhcccch-hhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 3222 2344455443332211 1112223456666652 11225667777778888877766533
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=4.9e-15 Score=143.45 Aligned_cols=207 Identities=15% Similarity=0.076 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~ 683 (889)
..++..+|.-|+..|++..|...++++++++|++..+|..++.+|...|+.+.|-+.|++|++++|++.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----------- 103 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----------- 103 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----------
Confidence 356788999999999999999999999999999999999999999999999999999999999999862
Q ss_pred cCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC----cchHHHHHHHHHHHcCC
Q 002716 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR----HTRAHQGLARVHFLKNN 759 (889)
Q Consensus 684 ~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~----p~~a~~~La~~~~~~g~ 759 (889)
++++|.|..++.+|++++|..+|++|+..- |..++.++|.|..+.|+
T Consensus 104 -----------------------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 104 -----------------------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred -----------------------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 578899999999999999999999999752 22899999999999999
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 002716 760 KTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839 (889)
Q Consensus 760 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 839 (889)
+ +.|...|+++++++|+++.+...++...++.|+|..|...+++....-+
T Consensus 155 ~------------------------------~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 155 F------------------------------DQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG 204 (250)
T ss_pred c------------------------------hhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc
Confidence 9 7777777888888899999999999999999999999999998876544
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q 002716 840 -DLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 840 -~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l 880 (889)
+-..+.+...+-...||-+.|-++=.+.-...|...+.-..
T Consensus 205 ~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f 246 (250)
T COG3063 205 AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTF 246 (250)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhH
Confidence 44778888999999999999999888888999998876543
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.6e-14 Score=149.67 Aligned_cols=169 Identities=14% Similarity=0.044 Sum_probs=131.6
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 557 (889)
+..++.+|..+...|++++|+..+++++..+| +...+..+|.++...|++++|+..+++++..+|.+. .++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG------DVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHH
Confidence 45677788888888888888888888888777 677777788888888888888888888888888777 67777
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
+|.++...|++++|..++ .+++... |.....+..+|.++...|++++|...++++++..|
T Consensus 105 ~~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQF------------------EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHcccHHHHHHHH------------------HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 788888888888886666 6666532 45566777788888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 636 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.++..+..+|.++...|++++|+..+++++...|..
T Consensus 167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 878888888888888888888888888877654443
No 74
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.9e-15 Score=163.73 Aligned_cols=222 Identities=16% Similarity=0.158 Sum_probs=179.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCC
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQ 686 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~ 686 (889)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++ ++...||..|...|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh-
Confidence 5678888899999999999999999999999999999999999898899999999999999999 88888998888888
Q ss_pred CCCcchhhhhhHHHHhcchhhhCchhHHHHHHHH-----------HHHHcCChHHHHHHHHHHHccCcc----hHHHHHH
Q 002716 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS-----------VYVDCGQLDLAADCYSNALKIRHT----RAHQGLA 751 (889)
Q Consensus 687 ~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~-----------~y~~~g~~~~A~~~~~~al~~~p~----~a~~~La 751 (889)
.-.+|++++.+-+.....|..++. -......+..-.+.|-.+....|. +++..||
T Consensus 368 ----------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG 437 (579)
T KOG1125|consen 368 ----------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG 437 (579)
T ss_pred ----------hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence 556666666654222111111111 001111233445566666666663 8899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHH
Q 002716 752 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEA 827 (889)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA 827 (889)
.+|...|+|++|++.|+.+|...|++..+++.+|.- .+..+|+..|++|+++.|..+.+++++|..++..|.|++|
T Consensus 438 VLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 438 VLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred HHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 999999999999999999999999999999998883 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 002716 828 IAELSRAIAFKAD 840 (889)
Q Consensus 828 ~~~l~kal~~~p~ 840 (889)
+++|-.||.+.+.
T Consensus 518 ~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 518 VKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999977654
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=9.4e-15 Score=151.50 Aligned_cols=195 Identities=17% Similarity=0.112 Sum_probs=177.0
Q ss_pred cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc
Q 002716 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL 525 (889)
Q Consensus 447 ~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~ 525 (889)
.+|+.+...+.+ ++|+..++++++.+|++..++..+|.++...|++++|++.+++++...| +...+..+|.++...
T Consensus 36 ~la~~~~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 36 QLALGYLEQGDL---EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 356677777777 9999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccHHHHHHHHHHHHHhC--CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 526 EDYQAALCDVQAILTLS--PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~--p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
|++++|+..+++++... |... ..+..+|.++...|++++|..++ .++++.+|.+
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~ 168 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPA------RSLENAGLCALKAGDFDKAEKYL------------------TRALQIDPQR 168 (234)
T ss_pred ccHHHHHHHHHHHHhccccccch------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCcCC
Confidence 99999999999999853 2333 57788999999999999998888 9999999999
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
+..+..+|.++...|++++|...++++++..|.++..+..++.++...|+.++|....+.+....
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999989889999999999999999999999888776543
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=9.4e-14 Score=154.81 Aligned_cols=315 Identities=14% Similarity=0.001 Sum_probs=226.3
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchh
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 549 (889)
.||+.+.+|..+|.++...|+.+.|...+.++....| .......++.++...|++++|...+++++..+|++.
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--- 77 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--- 77 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---
Confidence 3899999999999999999999999999998887776 345677889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 550 ~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
.++.. +..+...+.+..+.... ...+.......|.....+..+|.++...|++++|...+++
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~--------------~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHV--------------ARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhH--------------HHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45544 45555555444332222 1112333356677778888999999999999999999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh
Q 002716 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (889)
Q Consensus 630 al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 708 (889)
+++..|+++.++..+|.+++..|++++|+..+++++...|.. ..
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----------------------------------- 184 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML----------------------------------- 184 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch-----------------------------------
Confidence 999999999999999999999999999999999999776542 10
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHH------HHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHH
Q 002716 709 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQ------GLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 781 (889)
Q Consensus 709 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~------~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 781 (889)
....+..+|.++...|++++|+..|++++...|. .... .+...+...|....+.. ++.+...
T Consensus 185 --~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-w~~~~~~-------- 253 (355)
T cd05804 185 --RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR-WEDLADY-------- 253 (355)
T ss_pred --hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH-HHHHHHH--------
Confidence 0124667888999999999999999999876662 1111 12222223332211111 1111110
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------HHHHHHHHHHH
Q 002716 782 EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD----------LHLLHLRAAFH 851 (889)
Q Consensus 782 ~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~----------~~~l~l~a~~~ 851 (889)
...... .+.........+.++...|+.++|...++........ .....+.+..+
T Consensus 254 ---------------~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 254 ---------------AAWHFP-DHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred ---------------HHhhcC-cccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 000000 0112233346778888999999999999887653221 12223788888
Q ss_pred HHcCCHHHHHHHHHHHHccC
Q 002716 852 EHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 852 ~~~g~~~~A~~~~~~al~l~ 871 (889)
...|++++|++.+..++.+-
T Consensus 318 ~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 318 FAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 88999999999999998764
No 77
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=4e-15 Score=161.29 Aligned_cols=248 Identities=15% Similarity=0.104 Sum_probs=182.1
Q ss_pred hhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhccc
Q 002716 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALED 527 (889)
Q Consensus 449 g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~ 527 (889)
|..+.+.|.. .+|.-.|+.|++.||.+..+|..+|.+....++-..||..+.++++++| +.+++..+|..|...|.
T Consensus 292 G~~lm~nG~L---~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDL---SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCc---hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 4444444544 7888889999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch----HHHHHHHHhcCC--
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS----LSVIYQMLESDA-- 601 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s----l~~~~~al~~~p-- 601 (889)
-.+|...+.+-+...|.+..... ....+++..- ++..+... ...+-.+....|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~-----------a~~~~~~~~~----------~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS-----------AGENEDFENT----------KSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc-----------cCccccccCC----------cCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999888776651111 0000000000 00000000 122244555556
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHH
Q 002716 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 680 (889)
Q Consensus 602 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~ 680 (889)
.++++...||.+|...|+|++|+.+|+.|+...|++...|+.||-.+....+.++|+..|++|+++.|.+ .
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-------- 499 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-------- 499 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee--------
Confidence 6788888899999999999999999999999999999999999999988888999999999999888887 4
Q ss_pred HHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------------hHHH
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------------RAHQ 748 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------------~a~~ 748 (889)
+.+|||..+...|.|++|+++|-.||.+.+. .+|.
T Consensus 500 ---------------------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~ 546 (579)
T KOG1125|consen 500 ---------------------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQ 546 (579)
T ss_pred ---------------------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHH
Confidence 4556666666677777778777777766533 3555
Q ss_pred HHHHHHHHcCCHH
Q 002716 749 GLARVHFLKNNKT 761 (889)
Q Consensus 749 ~La~~~~~~g~~~ 761 (889)
.|-.++...++.+
T Consensus 547 tLR~als~~~~~D 559 (579)
T KOG1125|consen 547 TLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHcCCch
Confidence 5555555556554
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=5.1e-13 Score=135.01 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=208.3
Q ss_pred hhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcccHHHHHHHH
Q 002716 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 461 ~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-----~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
.++|+..|-..++.||...++...+|.++...|..+.||..=+..+..-. ...++..+|.-|...|-++.|...|
T Consensus 51 ~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f 130 (389)
T COG2956 51 PDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIF 130 (389)
T ss_pred cchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 38999999999999999999999999999999999999987665554322 3456778899999999999999999
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC-----hHHHHHH
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-----GVLYFRQ 610 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~-----~~~~~~l 610 (889)
..+.....--. .++..|..+|....+|++|++.. ++..+..+.. +..|..+
T Consensus 131 ~~L~de~efa~------~AlqqLl~IYQ~treW~KAId~A------------------~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 131 NQLVDEGEFAE------GALQQLLNIYQATREWEKAIDVA------------------ERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHhcchhhhH------HHHHHHHHHHHHhhHHHHHHHHH------------------HHHHHcCCccchhHHHHHHHHH
Confidence 98876433333 68888999999999999996666 7777776654 4567889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSS 689 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~ 689 (889)
+..+....+.+.|+..+.++++.+|+...+-..+|.++...|+++.|++.++.+++.+|++ .
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~----------------- 249 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS----------------- 249 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH-----------------
Confidence 9999999999999999999999999999999999999999999999999999999888887 2
Q ss_pred cchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
.+...|-.+|...|+.++.+.++.++.+..+. .+...++..-....-.+.|...+.
T Consensus 250 -----------------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 250 -----------------------EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLT 306 (389)
T ss_pred -----------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHH
Confidence 34555666777788888888888888887777 666667777777777777777777
Q ss_pred HHHHHhccCHH
Q 002716 769 KLIKKARNNAS 779 (889)
Q Consensus 769 ~al~~~~~~~~ 779 (889)
+-+...|....
T Consensus 307 ~Ql~r~Pt~~g 317 (389)
T COG2956 307 RQLRRKPTMRG 317 (389)
T ss_pred HHHhhCCcHHH
Confidence 77777775433
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.65 E-value=3.5e-12 Score=139.92 Aligned_cols=262 Identities=14% Similarity=-0.004 Sum_probs=189.9
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHc--CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccC-------cchhHHHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-------PLGWMYQER 455 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------~~g~~~~~~ 455 (889)
+++.-..-.++.|+|....+..++.++- .|..+++..+-.....|+..+|++.....+.... ..|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 4455555566889999999999999983 4777777778888889999999988776665433 356777777
Q ss_pred hhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHH
Q 002716 456 SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCD 534 (889)
Q Consensus 456 ~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~ 534 (889)
+.| ++|+.+|..|+.++|+|...|..++.+-.++++++.....-++.++..| ....+...+..+.-.|++..|..+
T Consensus 89 K~Y---~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKY---DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 9999999999999999999999999999999999999999999999999 777788888889999999999988
Q ss_pred HHHHHHhCC--CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHH
Q 002716 535 VQAILTLSP--DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (889)
Q Consensus 535 ~~~al~~~p--~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~ 612 (889)
.+...+..- -.........+......+....|..++|.+.+..++. .--+........|.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~------------------~i~Dkla~~e~ka~ 227 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK------------------QIVDKLAFEETKAD 227 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh------------------HHHHHHHHhhhHHH
Confidence 887776552 1222222223444445556666777777554411111 01122334456788
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhc
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL-RKAEESIQM 667 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~-~~~~~al~~ 667 (889)
++++++++++|...|...+..+|++...+..+-.++..-.+.-+++ ..|...-+.
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999998887777666664333333444 444444333
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=3.2e-14 Score=137.88 Aligned_cols=199 Identities=17% Similarity=0.102 Sum_probs=174.1
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE 526 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g 526 (889)
+|.-|.+.+.+ ..|...+++|++.||+...+|..+|.+|...|+.+.|-+.|++++.++| +.+++.+.|+.+..+|
T Consensus 41 Lal~YL~~gd~---~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDY---AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 44556666666 8888899999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 527 ~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
.+++|...|++++. +|.+.... .++-++|.|..+.|+.+.|..++ +++++.+|+++..
T Consensus 118 ~~~eA~q~F~~Al~-~P~Y~~~s---~t~eN~G~Cal~~gq~~~A~~~l------------------~raL~~dp~~~~~ 175 (250)
T COG3063 118 RPEEAMQQFERALA-DPAYGEPS---DTLENLGLCALKAGQFDQAEEYL------------------KRALELDPQFPPA 175 (250)
T ss_pred ChHHHHHHHHHHHh-CCCCCCcc---hhhhhhHHHHhhcCCchhHHHHH------------------HHHHHhCcCCChH
Confidence 99999999999986 45554222 57889999999999999998888 9999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 607 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
...++..++..|++-.|..+++......+-..+.+.....+....|+-+.|-++=.+.-...|..
T Consensus 176 ~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 176 LLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999988888888888888888888999998888777777777766
No 81
>PLN02789 farnesyltranstransferase
Probab=99.63 E-value=5.8e-14 Score=150.75 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=180.1
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccH--HHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDY--QAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g-~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~--~~A~~~~~~ 537 (889)
++|+..++++++++|++..+|.+++.++...| ++++|+..+++++..+| +..++..++++....|+. ++++..+.+
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 78899999999999999999999999999998 68999999999999999 899999999999888874 788999999
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
++..+|++. .++...+.+....|++++|+.++ .++++.+|.+..+|+.++.+....
T Consensus 134 al~~dpkNy------~AW~~R~w~l~~l~~~~eeL~~~------------------~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 134 ILSLDAKNY------HAWSHRQWVLRTLGGWEDELEYC------------------HQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHhCcccH------HHHHHHHHHHHHhhhHHHHHHHH------------------HHHHHHCCCchhHHHHHHHHHHhc
Confidence 999999999 89999999999999999997777 999999999999999999998776
Q ss_pred ---CCH----HHHHHHHHHHHHcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc
Q 002716 618 ---NCP----EAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 684 (889)
Q Consensus 618 ---g~~----~~A~~~l~~al~~~p~~~~~~~~lg~~~~~----~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~ 684 (889)
|.+ ++++.+..+++..+|++..+|++++.++.. .++..+|++.+.++++.+|+. .+...++.++...
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 333 578888999999999999999999999988 456788999999999988888 7788888888753
No 82
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.63 E-value=2e-15 Score=140.40 Aligned_cols=150 Identities=18% Similarity=0.311 Sum_probs=123.7
Q ss_pred CCCCccccEEEEeC---CeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCC-
Q 002716 176 SGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT- 251 (889)
Q Consensus 176 ~~~~~~~Dv~~~v~---~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~- 251 (889)
.+.+.+||++|.++ ++.|+|||.|||+||++++ |.++-.|. ..+..+. ++.+++|...++|+||++++ +.
T Consensus 61 ~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~d--Dad~Ea~~t~iRWIYTDEid-fk~ 134 (280)
T KOG4591|consen 61 LEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDLD--DADFEAFHTAIRWIYTDEID-FKE 134 (280)
T ss_pred hhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhccc--ccCHHHHHHhheeeeccccc-ccc
Confidence 46888999999997 5789999999999999986 54443222 2344555 59999999999999999999 64
Q ss_pred -HHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhccc-------ccChHH
Q 002716 252 -PNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDER 323 (889)
Q Consensus 252 -~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~-------~l~~~~ 323 (889)
...+.+++.+|++|.++.|++.|++.+.+.+ .++||+.++++|++.+++.|+..|-..+..+-++ .++..-
T Consensus 135 dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l-~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~aL 213 (280)
T KOG4591|consen 135 DDEFLLELCELANRFQLELLKERCEKGLGALL-HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAAL 213 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHHH
Confidence 4568899999999999999999999999998 8999999999999999999999999999877654 233344
Q ss_pred HHHHhcccc
Q 002716 324 VVEIFSHAN 332 (889)
Q Consensus 324 ~~~ll~~~~ 332 (889)
+.+++.+..
T Consensus 214 LYklId~kT 222 (280)
T KOG4591|consen 214 LYKLIDGKT 222 (280)
T ss_pred HHHHHcCCC
Confidence 555555543
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=4.6e-13 Score=149.79 Aligned_cols=239 Identities=15% Similarity=0.075 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhCCHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEAAM 624 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~ 624 (889)
.+...++..|...|++++|+.++ +++++. .|.-......+|.+|..++++++|+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~------------------k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv 261 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLC------------------KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAV 261 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHH------------------HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHH
Confidence 56677999999999999998888 666665 3444455567999999999999999
Q ss_pred HHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------h--HHHHHHHHHHHHcCCC
Q 002716 625 RSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS-------F--EAFFLKAYALADSSQD 687 (889)
Q Consensus 625 ~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-------~--~a~~~la~~~~~~~~~ 687 (889)
..|++|+.+ +|.-+.++.+||.+|...|++++|..++++|+++... . ..+..++.++...+
T Consensus 262 ~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~-- 339 (508)
T KOG1840|consen 262 NLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN-- 339 (508)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc--
Confidence 999999875 4455678999999999999999999999999876321 1 45666777777666
Q ss_pred CCcchhhhhhHHHHhcchhhhCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----------hHHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRK-----GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----------RAHQGLAR 752 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~-----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~----------~a~~~La~ 752 (889)
..+.+...+..+++.+...+.. +..+.+||.+|..+|++++|.+.|++|+.+... ..+..+|.
T Consensus 340 --~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 340 --EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred --chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 3334444455555555544322 678899999999999999999999999987633 67778999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 002716 753 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 832 (889)
.|.+.+++.+|...|.+++.+.+ ..-.-.|+....|.+||.+|..+|++++|+++.+
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~-----------------------~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMK-----------------------LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHH-----------------------HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99999999989888877765432 1112356778899999999999999999999999
Q ss_pred HHHh
Q 002716 833 RAIA 836 (889)
Q Consensus 833 kal~ 836 (889)
+++.
T Consensus 475 ~~~~ 478 (508)
T KOG1840|consen 475 KVLN 478 (508)
T ss_pred HHHH
Confidence 9884
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.62 E-value=1e-13 Score=154.88 Aligned_cols=259 Identities=17% Similarity=0.119 Sum_probs=200.5
Q ss_pred HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC--------CC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 470 ~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~--------~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
.....+|....+...+|..|..+|+|++|+..++++++. .| -...+...|.+|..++++.+|+..|+++++
T Consensus 190 ~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 190 GLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred hcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334567888888889999999999999999999999988 44 334445589999999999999999999998
Q ss_pred hC-----CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh-cCCCChHHHHHHHHHH
Q 002716 541 LS-----PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-SDAPKGVLYFRQSLLL 614 (889)
Q Consensus 541 ~~-----p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~-~~p~~~~~~~~la~~~ 614 (889)
+. ++++. .+.++..|+.+|...|++++|..++.. .+..+++... ..|.-+..+.+++.++
T Consensus 270 i~e~~~G~~h~~---va~~l~nLa~ly~~~GKf~EA~~~~e~-----------Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 270 IREEVFGEDHPA---VAATLNNLAVLYYKQGKFAEAEEYCER-----------ALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHhcCCCCHH---HHHHHHHHHHHHhccCChHHHHHHHHH-----------HHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 63 34431 125788999999999999999888811 1222222111 1233445678899999
Q ss_pred HHhCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 002716 615 LRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~ 686 (889)
..++++++|..++++++++. +.-+..+.++|.+|+.+|++++|.+.|++|+.+..... +...
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~-----~~~~----- 405 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL-----GKKD----- 405 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----cCcC-----
Confidence 99999999999999988753 23356788999999999999999999999996543220 0000
Q ss_pred CCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC-------cc--hHHHHHHHHHHHc
Q 002716 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-------HT--RAHQGLARVHFLK 757 (889)
Q Consensus 687 ~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~-------p~--~a~~~La~~~~~~ 757 (889)
......++++|..|.+++++.+|...|..+..+. |+ ..+.+||.+|..+
T Consensus 406 ----------------------~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 406 ----------------------YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred ----------------------hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 0012578889999999999999999999888764 22 7899999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 002716 758 NNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 758 g~~~~A~~~~~~al~~~ 774 (889)
|++++|+++.++++...
T Consensus 464 g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLNAR 480 (508)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999987544
No 85
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=1.1e-13 Score=148.46 Aligned_cols=215 Identities=10% Similarity=0.034 Sum_probs=174.1
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
++-++-.++...+++++|+..+++++.++| +..++..++.++..+| ++++++..+.+++..+|++. .+++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny------qaW~~R 112 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY------QIWHHR 112 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch------HHhHHH
Confidence 343444456677889999999999999999 8899999999999998 68999999999999999999 888888
Q ss_pred HHHHHHhhch--hHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 559 MLVREHIDNW--TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 559 g~~~~~~~~~--~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
+.+....|+. ++++.++ .++++.+|.+..+|..++.++...|++++|+.++.++++.+|.
T Consensus 113 ~~~l~~l~~~~~~~el~~~------------------~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~ 174 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFT------------------RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR 174 (320)
T ss_pred HHHHHHcCchhhHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC
Confidence 8888887763 4554444 8999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh
Q 002716 637 DHERLVYEGWILYDT---SHC----EEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (889)
Q Consensus 637 ~~~~~~~lg~~~~~~---g~~----~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 708 (889)
+..+|+.+|.++... |.+ ++++.+..++|.++|++ .+|..++.++...+.
T Consensus 175 N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~---------------------- 232 (320)
T PLN02789 175 NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE---------------------- 232 (320)
T ss_pred chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc----------------------
Confidence 999999999988765 323 57888888999999998 777777666554220
Q ss_pred CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHH
Q 002716 709 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 756 (889)
Q Consensus 709 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~ 756 (889)
..++..+|+..+.++++..|. .++..|+.+|..
T Consensus 233 ---------------~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 233 ---------------ALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ---------------ccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 024455677777777776666 677778888775
No 86
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.9e-12 Score=129.64 Aligned_cols=272 Identities=13% Similarity=0.042 Sum_probs=187.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Q 002716 483 MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 483 ~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
|..|.-++-..+.++|+..|-.+++.+| ..++...+|.+|...|+.+.|+.+.+.++. .|+.+ +..+..+.+.||.-
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT-~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLT-FEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCc-hHHHHHHHHHHHHH
Confidence 5678888889999999999999999999 899999999999999999999999887664 56665 44444577777777
Q ss_pred HHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---
Q 002716 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH--- 638 (889)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--- 638 (889)
|...|-++.|+..| .+..+.......+...+-.+|....++++|+..-++..++.+...
T Consensus 117 ym~aGl~DRAE~~f------------------~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e 178 (389)
T COG2956 117 YMAAGLLDRAEDIF------------------NQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE 178 (389)
T ss_pred HHHhhhhhHHHHHH------------------HHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH
Confidence 77777777776666 554444444455666677777777777777777777777666532
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHH
Q 002716 639 --ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (889)
Q Consensus 639 --~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~ 716 (889)
.-+..++..+....+.+.|...+.++++.+|+.. .+-.
T Consensus 179 IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----------------------------------------RAsi 218 (389)
T COG2956 179 IAQFYCELAQQALASSDVDRARELLKKALQADKKCV----------------------------------------RASI 218 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce----------------------------------------ehhh
Confidence 2345566666666667777777777766666551 2334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHH
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELT 793 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A 793 (889)
.+|.++...|+|.+|++.++.+++.+|+ .+...|..+|...|+.++....+.++.+..+.
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g----------------- 281 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG----------------- 281 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-----------------
Confidence 5566666677777777777777777776 56666777777777776666666666655442
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH
Q 002716 794 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH 845 (889)
Q Consensus 794 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~ 845 (889)
+.+...++..-....-.+.|...+.+-+..+|+...++
T Consensus 282 --------------~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~ 319 (389)
T COG2956 282 --------------ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFH 319 (389)
T ss_pred --------------ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHH
Confidence 22333344444444445666666666666666653333
No 87
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.61 E-value=9.6e-16 Score=139.70 Aligned_cols=101 Identities=26% Similarity=0.462 Sum_probs=90.1
Q ss_pred CCCccccEEEEeC-CeEEEehHHHHhhcChhhhhhhcCC-CCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCC-HH
Q 002716 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN 253 (889)
Q Consensus 177 ~~~~~~Dv~~~v~-~~~~~~hr~vLaa~s~~F~~mf~~~-~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~-~~ 253 (889)
+++.++||+|.++ |++|+|||.||+++|+||+.||.++ +.++...+|.+++ +++++|..+++|+|+|++. ++ .+
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~Y~~~~~-~~~~~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPD--VSPEAFEAFLEYMYTGEIE-INSDE 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETT--SCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccc--ccccccccccccccCCccc-CCHHH
Confidence 4567899999999 8999999999999999999999998 7777777899895 9999999999999999999 87 99
Q ss_pred HHHHHHHHHHHHcHHHHHHHHHHHHHh
Q 002716 254 LLLEILIFANKFCCERLKDACDRKLAS 280 (889)
Q Consensus 254 ~~~~ll~~A~~~~~~~l~~~~~~~l~~ 280 (889)
++.+++.+|++|.++.|+..|...+..
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 999999999999999999999887754
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1e-11 Score=134.95 Aligned_cols=404 Identities=15% Similarity=0.106 Sum_probs=194.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
++|....++.+...|++..+....-.++...++|++|+...++-..........+..+.|.++++..++|+..++ ..
T Consensus 29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~ 105 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GL 105 (652)
T ss_pred HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cc
Confidence 444444455555555555555555555555555555543332221111111111344444455555555554444 22
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccc-----------h-H-HHHHHHHhcCCC-ChHHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-----------S-L-SVIYQMLESDAP-KGVLY 607 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~-----------s-l-~~~~~al~~~p~-~~~~~ 607 (889)
++... ....+.+.+.+++|+|++|...|+-..+=.. +|.. + + ..+.+.....|. ..+.+
T Consensus 106 ~~~~~------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~ 178 (652)
T KOG2376|consen 106 DRLDD------KLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELL 178 (652)
T ss_pred cccch------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHH
Confidence 33333 3344444445555555554444422211000 0000 0 0 002333333444 56788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--------CCC--c-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQH--------AAS--D-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~--------~p~--~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 672 (889)
|+.|.++...|+|.+|++.+++++++ +.+ + ..+...++.++..+|+.++|...|...++.+|.++
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999433 111 1 12567889999999999999999999999888772
Q ss_pred -HHHHHHHHHHHcCCCCCcch---------hhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 673 -AFFLKAYALADSSQDSSCSS---------TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 673 -a~~~la~~~~~~~~~~~~~~---------~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
......+.+.....+..-.+ ......+.++..+... ++...+.|.+...+..+.-+++.+.....-...
T Consensus 259 ~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~ 337 (652)
T KOG2376|consen 259 PSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFTNKMDQVRELSASLPGMS 337 (652)
T ss_pred hHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccC
Confidence 22111111111111111111 1111111111111111 113455555655555566555555444443344
Q ss_pred cc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC-HHHHHHHHh----cCCHHHHHHHHHH--------HHhcCCC
Q 002716 743 HT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-ASAYEKRSE----YCDRELTRADLEM--------VTQLDPL 806 (889)
Q Consensus 743 p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~----~~~~~~A~~~l~~--------al~l~p~ 806 (889)
|. .++.. .........+.+|...+....+..|.+ ......+.. .|++..|+..+.. ..+.. .
T Consensus 338 p~~~~~~ll~-~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~ 415 (652)
T KOG2376|consen 338 PESLFPILLQ-EATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK-H 415 (652)
T ss_pred chHHHHHHHH-HHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-c
Confidence 44 11111 111122224566666666666666644 122222222 1666666666662 22211 1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAELSRAIAF-------KADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEML 878 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-------~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l 878 (889)
.+.+.-.+-..+.+.++.+.|...+.+|+.. .+.. ..+...+.+..+-|+-++|...+++.++.+|++.+++
T Consensus 416 ~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 416 LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 1223333444555555555555555555432 1111 1222445555555777777777777777777776655
No 89
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=149.84 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=136.8
Q ss_pred CCCCCCCccCccc--CCCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCc--eEecCCCCCHHHHHHH
Q 002716 163 DINVAGSHETVSM--SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCED--IDLSENNISPSGLRII 238 (889)
Q Consensus 163 ~~~~~~~~~~~~~--~~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~--i~l~~~~~~~~~~~~l 238 (889)
..|...+...++. ..++.-|||++..-|++++.||..| ..|+||++||+|.|+|+.+.. ++|+|+.|+..+|..+
T Consensus 49 r~~ll~t~kyiyq~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a 127 (488)
T KOG4682|consen 49 RKKLLQTQKYIYQNLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVA 127 (488)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHH
Confidence 3343344444422 4688889999999999999999999 799999999999999999964 4567788999999999
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccc
Q 002716 239 SDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC 318 (889)
Q Consensus 239 l~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~ 318 (889)
+.-+|.++|. |+.+.|..+|++|..+..+.|.+.|...+...+ ++++++.+++.+..|+...+...|+++++.|+-..
T Consensus 128 ~gsLY~dEve-I~l~dv~gvlAaA~~lqldgl~qrC~evMie~l-spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i 205 (488)
T KOG4682|consen 128 FGSLYRDEVE-IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETL-SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTI 205 (488)
T ss_pred Hhhhhhhhee-ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhh
Confidence 9999999999 999999999999999999999999999988888 89999999999999999999999999999998554
Q ss_pred c
Q 002716 319 L 319 (889)
Q Consensus 319 l 319 (889)
.
T Consensus 206 ~ 206 (488)
T KOG4682|consen 206 Q 206 (488)
T ss_pred h
Confidence 4
No 90
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.56 E-value=1.3e-14 Score=126.31 Aligned_cols=90 Identities=28% Similarity=0.471 Sum_probs=85.4
Q ss_pred cEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH
Q 002716 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (889)
Q Consensus 183 Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~~A 262 (889)
||+|.++|++|++||.+|+++|+||++||.+++.|+....|.+++ +++.+|+.+++|+||+++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 799999999999999999999999999999999888888999995 9999999999999999999 9999999999999
Q ss_pred HHHcHHHHHHHHH
Q 002716 263 NKFCCERLKDACD 275 (889)
Q Consensus 263 ~~~~~~~l~~~~~ 275 (889)
++|.++.|...|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999998873
No 91
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.9e-09 Score=114.16 Aligned_cols=463 Identities=12% Similarity=0.048 Sum_probs=304.3
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchh--HhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhH-----HHHHh
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWM-----YQERS 456 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~-----~~~~~ 456 (889)
..|...|.--..++++..|...|++|+..++... +...|..-.+....--|...++..++..+..... |.+.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE- 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE- 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH-
Confidence 3566777778899999999999999999875543 2333444444444555666666666665543322 2221
Q ss_pred hcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 457 ~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
..++...|-+.|++-++..|+. .+|..--..-.+.+.++.|...|++-+-..|....+...+..-...|+...|...|+
T Consensus 153 ~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1223377888888888888864 466666666777888999999999988888888888888888888999999999999
Q ss_pred HHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC--hHHHHHHHHHH
Q 002716 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK--GVLYFRQSLLL 614 (889)
Q Consensus 537 ~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~--~~~~~~la~~~ 614 (889)
.++..-.++.... ......+..-..++.++.|.-.+ +-++..-|.+ ..++...-..-
T Consensus 232 rAie~~~~d~~~e---~lfvaFA~fEe~qkE~ERar~iy------------------kyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 232 RAIEFLGDDEEAE---ILFVAFAEFEERQKEYERARFIY------------------KYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhcCcccHHHHHHHHHHHH
Confidence 9988765544110 11112233334455566664444 6677777766 23333222222
Q ss_pred HHhCCH---HHHHHH-----HHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---HHH-----HHHH
Q 002716 615 LRLNCP---EAAMRS-----LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---EAF-----FLKA 678 (889)
Q Consensus 615 ~~~g~~---~~A~~~-----l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---~a~-----~~la 678 (889)
-+-|+. +.++-. |+..+..+|.|.++|+..-.+....|+.+.-.+.|++||..-|.. ..| ..+-
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 233443 333322 677788888888888888888888888888888888888766654 111 1222
Q ss_pred HHHHHcCCCCCcchhhhhhHHHHhcchhhh-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHH
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 756 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~ 756 (889)
+++...- .........+.+..++++.... ..-+..|...+.....+.+...|.+.+-.|+...|. ...-+.-.+-.+
T Consensus 371 YalyeEl-e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElq 449 (677)
T KOG1915|consen 371 YALYEEL-EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQ 449 (677)
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 2222210 1111222222333333322211 111667777777778888889999999999888888 566666777788
Q ss_pred cCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHH--HHHhCCCHHHHHHH
Q 002716 757 KNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAA--VLMDSHKENEAIAE 830 (889)
Q Consensus 757 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~--~~~~~g~~~eA~~~ 830 (889)
.++++...++|++.++-.|.+..++...+.+ |+.+.|...|+-|++....+..-+...+. .-...|.++.|...
T Consensus 450 L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 450 LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 8889999999999999999888887777764 88899999998888875555544444333 34467888899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHHHHHcc
Q 002716 831 LSRAIAFKADLHLLHLRAAFHE-----HTG-----------DVLGALRDCRAALSV 870 (889)
Q Consensus 831 l~kal~~~p~~~~l~l~a~~~~-----~~g-----------~~~~A~~~~~~al~l 870 (889)
|++.++..+...++...|.+-. +.| ....|.+.|++|...
T Consensus 530 YerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 530 YERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 9999888777655554444433 334 566788888877654
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.48 E-value=3.6e-12 Score=133.15 Aligned_cols=176 Identities=10% Similarity=-0.041 Sum_probs=151.0
Q ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcch
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-AL---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~---~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 548 (889)
..++..+..++.+|..++..|++++|+..+++++...| ++ .+++.+|.++...|++++|+..|+++++.+|+++..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 45567788999999999999999999999999999998 43 578899999999999999999999999999988822
Q ss_pred hhhHHHHHHHHHHHHHh--------hchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH-------------
Q 002716 549 EGRVAASQLHMLVREHI--------DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY------------- 607 (889)
Q Consensus 549 ~~~~~a~~~lg~~~~~~--------~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~------------- 607 (889)
. .+++.+|.++... |++++|...+ ++++..+|.+...+
T Consensus 107 ~---~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~~~~~~~~~ 165 (235)
T TIGR03302 107 D---YAYYLRGLSNYNQIDRVDRDQTAAREAFEAF------------------QELIRRYPNSEYAPDAKKRMDYLRNRL 165 (235)
T ss_pred H---HHHHHHHHHHHHhcccccCCHHHHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence 1 2688889998876 8899997777 88888888876442
Q ss_pred ----HHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 608 ----FRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 608 ----~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
..+|..|...|++.+|+..++++++..|+ .+++++.+|.++...|++++|...++......|
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 36788899999999999999999999765 468999999999999999999998887765444
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=4e-11 Score=133.63 Aligned_cols=284 Identities=13% Similarity=0.013 Sum_probs=198.7
Q ss_pred hHHHHHHHHhhhcCCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~---~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
+.+...+.++.+..|.+ ......+|..+...|++++|++.+++++...| +...+.. +..++..|++..+.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 101 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR 101 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH
Confidence 44444555555555433 44566788999999999999999999999999 6666554 5566665555544444444
Q ss_pred HH----HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002716 538 IL----TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (889)
Q Consensus 538 al----~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~ 613 (889)
++ ..+|... .+...+|.++...|++++|...+ +++++.+|.++.++..+|.+
T Consensus 102 ~l~~~~~~~~~~~------~~~~~~a~~~~~~G~~~~A~~~~------------------~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 102 VLPLWAPENPDYW------YLLGMLAFGLEEAGQYDRAEEAA------------------RRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHhccCcCCCCcH------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhhCCCCcHHHHHHHHH
Confidence 44 3344444 56778889999999999997777 99999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--HHHH-HH---HHHHHH
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFF-LK---AYALAD 683 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~a~~-~l---a~~~~~ 683 (889)
+...|++++|+..+++++...|.++ ..+..+|.++...|++++|+..|++++...|.. .... .. ...+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 9999999999999999999877433 345679999999999999999999998776622 1111 11 111112
Q ss_pred cCCCCCcchhhhhhHHHHhcchhhh-Cch--hHHHHHHHHHHHHcCChHHHHHHHHHHHccC-c---c-------hHHHH
Q 002716 684 SSQDSSCSSTVVSLLEDALKCPSDR-LRK--GQALNNLGSVYVDCGQLDLAADCYSNALKIR-H---T-------RAHQG 749 (889)
Q Consensus 684 ~~~~~~~~~~~~~~~~~Al~~~~~~-~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~-p---~-------~a~~~ 749 (889)
.+. ......++.+....... ... .......+.++...|+.++|...++...... . . .....
T Consensus 238 ~g~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 238 AGH-----VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred cCC-----CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 221 11222333332222111 001 1222357778888999999998887765422 1 1 55666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 750 LARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 750 La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
.|.++...|++++|...+..++....
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999987764
No 94
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.46 E-value=4.6e-14 Score=156.42 Aligned_cols=142 Identities=18% Similarity=0.294 Sum_probs=123.2
Q ss_pred CCCccccEEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhc-cCCCCCC----
Q 002716 177 GDQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV-TGSLNGV---- 250 (889)
Q Consensus 177 ~~~~~~Dv~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Y-t~~~~~~---- 250 (889)
+.+...|+.++. +|+.++|||++|.+|++||..||...|.|+....+... .++.+-|..+|+|+| ++++..+
T Consensus 706 dh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~ 783 (1267)
T KOG0783|consen 706 DHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLK 783 (1267)
T ss_pred CCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccc
Confidence 445555777666 88999999999999999999999999999988666655 488999999999999 4554422
Q ss_pred CHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccCh
Q 002716 251 TPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND 321 (889)
Q Consensus 251 ~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~ 321 (889)
..+.+.++|..||.|-+..||+.|++.|...+ +..++-.++++|..|+|..|...|++|+..|+...|..
T Consensus 784 ~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl-~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Lea 853 (1267)
T KOG0783|consen 784 ESDFMFEILSIADQLLILELKSICEQSLLRKL-NLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEA 853 (1267)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-cccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 35679999999999999999999999999988 88999999999999999999999999999998766633
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=5.9e-12 Score=131.48 Aligned_cols=181 Identities=10% Similarity=-0.047 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
..++.+|..+...|++++|...+ ++++...|.++ .+++.+|.++...|++++|+..|++
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~ 95 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYF------------------EALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADR 95 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 68889999999999999997777 99999999876 5789999999999999999999999
Q ss_pred HHHcCCCcHH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhh
Q 002716 630 ARQHAASDHE---RLVYEGWILYDT--------SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 697 (889)
Q Consensus 630 al~~~p~~~~---~~~~lg~~~~~~--------g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~ 697 (889)
+++..|+++. +++.+|.++... |++++|++.|++++...|++ .++..+..+..... .
T Consensus 96 ~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~-----------~ 164 (235)
T TIGR03302 96 FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN-----------R 164 (235)
T ss_pred HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----------H
Confidence 9999998766 789999999876 88999999999999999998 33322221111100 0
Q ss_pred HHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002716 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (889)
Q Consensus 698 ~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~ 772 (889)
.......+|..|...|++.+|+..|+++++..|+ .++..+|.++...|++++|...++.+..
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0123457899999999999999999999998775 7899999999999999999998888766
Q ss_pred Hhc
Q 002716 773 KAR 775 (889)
Q Consensus 773 ~~~ 775 (889)
..|
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 554
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=5e-10 Score=114.39 Aligned_cols=264 Identities=14% Similarity=0.023 Sum_probs=170.6
Q ss_pred hHHHHHHHHhhhcCCCCh-hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLS-YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~-~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
..|+..++-....+.... ..-..+|.+++..|+|++|+..|.-+.+.+. +.+....++.+++.+|.|.+|...-.+
T Consensus 39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k-- 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK-- 116 (557)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh--
Confidence 666666666655544333 4456689999999999999999998887655 788888899999999999999766544
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~ 619 (889)
.|+.+ -...++-.+..+.++-.+- + .+++.++-. .+-...+|.++...-.
T Consensus 117 --a~k~p------L~~RLlfhlahklndEk~~---~----------------~fh~~LqD~---~EdqLSLAsvhYmR~H 166 (557)
T KOG3785|consen 117 --APKTP------LCIRLLFHLAHKLNDEKRI---L----------------TFHSSLQDT---LEDQLSLASVHYMRMH 166 (557)
T ss_pred --CCCCh------HHHHHHHHHHHHhCcHHHH---H----------------HHHHHHhhh---HHHHHhHHHHHHHHHH
Confidence 46666 2333444444555542221 1 112222211 1223456666666777
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhH
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLL 698 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~ 698 (889)
|.+|+..|.+.+..+|+....-.+++.+|++..-++-+.+.+.--++..|+. -+..+++..+...-+.....++.....
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 8899999999998888887788888999999988888888888888888888 666667666655432222111111111
Q ss_pred ------------------------HHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHH
Q 002716 699 ------------------------EDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 751 (889)
Q Consensus 699 ------------------------~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La 751 (889)
+.|++.+....+- +++..+|...|..+++..+|....+. .+|. .-+..-|
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKg 323 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKG 323 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHH
Confidence 1111111111111 67888888899999999999887654 4455 3333445
Q ss_pred HHHHHcCCH
Q 002716 752 RVHFLKNNK 760 (889)
Q Consensus 752 ~~~~~~g~~ 760 (889)
.++...|+-
T Consensus 324 vv~aalGQe 332 (557)
T KOG3785|consen 324 VVFAALGQE 332 (557)
T ss_pred HHHHHhhhh
Confidence 555555554
No 97
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.1e-10 Score=123.60 Aligned_cols=307 Identities=18% Similarity=0.195 Sum_probs=203.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
++.--..+...|+|++|.....+++...|++. .+.+.--.+..+.++|++|+...
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~------~a~~cKvValIq~~ky~~ALk~i------------------- 69 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDE------DAIRCKVVALIQLDKYEDALKLI------------------- 69 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcH------hhHhhhHhhhhhhhHHHHHHHHH-------------------
Confidence 33334556778899999999999999988888 67777777888888999885333
Q ss_pred HHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 595 QMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 595 ~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+.++. .....+..+.+.+++|..++|+..++ ..++.+...+...|.++|++|+|++|+..|+..++-+.+.
T Consensus 70 ---kk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 70 ---KKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred ---HhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 22221 11122688999999999999999988 4556667788889999999999999999999988766555
Q ss_pred -HHH--HHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc---
Q 002716 672 -EAF--FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--- 744 (889)
Q Consensus 672 -~a~--~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~-~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--- 744 (889)
+.. .++..+-..+. . .+ ++...... ..-+.++|.+.++...|+|.+|++.+++|+++...
T Consensus 144 ~d~~~r~nl~a~~a~l~---------~-~~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQ---------V-QL---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred HHHHHHHHHHHHHHhhh---------H-HH---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 221 11111111110 0 01 11111111 12567889999999999999999999999543211
Q ss_pred --------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHH----HHHHh------c-------------
Q 002716 745 --------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY----EKRSE------Y------------- 787 (889)
Q Consensus 745 --------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~------~------------- 787 (889)
.....|+.++..+|+.++|...|...+..+|.+.... +++.. |
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 4666789999999999999999999999887322110 00000 0
Q ss_pred ------------------------------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Q 002716 788 ------------------------------CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF 837 (889)
Q Consensus 788 ------------------------------~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~ 837 (889)
+..+.+.+.........|.....-........+...+.+|+..+....+-
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~ 370 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG 370 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc
Confidence 11111111111111122333333334444555555788999999998888
Q ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 838 KADL--HLLHLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 838 ~p~~--~~l~l~a~~~~~~g~~~~A~~~~~ 865 (889)
.|.. .++.+++.+...+|+++.|++.+.
T Consensus 371 ~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 371 HPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8886 444578888888999999999999
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=2.1e-09 Score=112.62 Aligned_cols=291 Identities=14% Similarity=-0.020 Sum_probs=196.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh
Q 002716 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (889)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~ 598 (889)
|..-+..|+|.+|++...+.-+..+... -++..-+....+.|+.+.|..|+ .++-+
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~------l~~l~aA~AA~qrgd~~~an~yL------------------~eaae 146 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPV------LAYLLAAEAAQQRGDEDRANRYL------------------AEAAE 146 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchH------HHHHHHHHHHHhcccHHHHHHHH------------------HHHhc
Confidence 5555667888888888777655554444 44555566777788888887777 66666
Q ss_pred cCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HH
Q 002716 599 SDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF----EA 673 (889)
Q Consensus 599 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~----~a 673 (889)
..++ ...+....+.++...|++..|.....++++..|.+++++.....+|...|++.+......+.-+..--. .-
T Consensus 147 ~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 147 LAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred cCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 6333 334566777888888888888888888888888888888888888888888888887777655432111 11
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHH---HHccCcchHHHHH
Q 002716 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN---ALKIRHTRAHQGL 750 (889)
Q Consensus 674 ~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~---al~~~p~~a~~~L 750 (889)
+-+.+ +..+-.-....+..+.=..+++. .++.+| .....+
T Consensus 227 le~~a------------------------------------~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p-~l~~~~ 269 (400)
T COG3071 227 LEQQA------------------------------------WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP-ELVVAY 269 (400)
T ss_pred HHHHH------------------------------------HHHHHHHHhccccchHHHHHHHhccHHhhcCh-hHHHHH
Confidence 11111 11110000000111111111111 111111 333445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 829 (889)
+.-+...|+.++|.+....+++..-+.. ..+..+...++...-++..++.+...|+++..+..||.++.+.+.+.+|..
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence 5555666666666666666665554322 112222223677888889999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 830 ELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 830 ~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
+|+.++...|+...+..++..+.++|+..+|.+.++.++.+
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999988889999999999999999999999854
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.4e-09 Score=111.20 Aligned_cols=403 Identities=13% Similarity=0.036 Sum_probs=237.4
Q ss_pred HHhcccHHHHHHHHHHHHHcCcc---hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHH
Q 002716 393 RLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLD 469 (889)
Q Consensus 393 ~~~~g~~~eA~~~~~~al~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 469 (889)
++.+.||..|+..++-.+..+.. .....+|.+++..|++ ++|+..|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY------------------------------~~Al~~Y~ 81 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY------------------------------EEALNVYT 81 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH------------------------------HHHHHHHH
Confidence 45677888888888777654422 1223355555555554 44455555
Q ss_pred HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcch
Q 002716 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (889)
Q Consensus 470 ~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 548 (889)
.+.+.+.-+...+.++|.+++-.|.|.+|.....+ .| ++-+..++-.+..+.||-++-... .+-|.-..
T Consensus 82 ~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~f-h~~LqD~~----- 151 (557)
T KOG3785|consen 82 FLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTF-HSSLQDTL----- 151 (557)
T ss_pred HHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHH-HHHHhhhH-----
Confidence 55554444555666777777777777777554443 23 444444444555555554443322 22222111
Q ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Q 002716 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (889)
Q Consensus 549 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 628 (889)
+-...|+.+.+..-.|.+|+..+ .+.+..+|+...+...+|.+|.++.-++-+.+.+.
T Consensus 152 ----EdqLSLAsvhYmR~HYQeAIdvY------------------krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 152 ----EDQLSLASVHYMRMHYQEAIDVY------------------KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred ----HHHHhHHHHHHHHHHHHHHHHHH------------------HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 11223444555555566663333 66666666666666666666666666666666666
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhc--CCH---------------------------------HHHHHHHHHHHhcCCChHH
Q 002716 629 LARQHAASDHERLVYEGWILYDT--SHC---------------------------------EEGLRKAEESIQMKRSFEA 673 (889)
Q Consensus 629 ~al~~~p~~~~~~~~lg~~~~~~--g~~---------------------------------~eA~~~~~~al~~~p~~~a 673 (889)
-.+...|+.+-+.+.++..+++. |+. +.|++.+--.++.-| ++
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EA 287 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EA 287 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--Hh
Confidence 66666666666655555544442 221 122222222221111 56
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh-CchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc-------C---
Q 002716 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------R--- 742 (889)
Q Consensus 674 ~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~-------~--- 742 (889)
..++..-+..++ ..++|....++. +-.+.-|...|.+....|+-....+.++-|-+. .
T Consensus 288 RlNL~iYyL~q~-----------dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 288 RLNLIIYYLNQN-----------DVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred hhhheeeecccc-----------cHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 677777777777 788888777765 333566777788888877765554444433221 1
Q ss_pred -cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC-hHHHHHHHH
Q 002716 743 -HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLR-VYPYRYRAA 816 (889)
Q Consensus 743 -p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~-~~~~~~la~ 816 (889)
.-......|..++...++++-+.++...-....++.....+.+. +|++.+|.+.|-+.-..+-.+ ......+|.
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LAr 436 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLAR 436 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHH
Confidence 11456678888888999999998888776666554443333332 488899999988776555333 334567899
Q ss_pred HHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHH-HHHHHcCCHHHHHHHHHHHHccCCC
Q 002716 817 VLMDSHKENEAIAELSRAIAFKAD--LHLLHLRA-AFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 817 ~~~~~g~~~eA~~~l~kal~~~p~--~~~l~l~a-~~~~~~g~~~~A~~~~~~al~l~P~ 873 (889)
+|...++.+-|-..+-+.- .|. ...+.+.+ .+|.. +++--|.+.|...-.+||+
T Consensus 437 Cyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~-~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKA-NEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHccCCC
Confidence 9999999998877664421 222 23444444 45555 8998888999888888876
No 100
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=5e-09 Score=111.07 Aligned_cols=380 Identities=11% Similarity=-0.006 Sum_probs=287.5
Q ss_pred HhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHH
Q 002716 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 455 ~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
++.+ ..|-..+++|+..|..+...|..-+..-++.++..-|...+++++..-| -...++.....--.+|+...|.+
T Consensus 86 q~e~---~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEI---QRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHH---HHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4455 7888899999999999999999999999999999999999999999999 45555665666677899999999
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~ 613 (889)
+|++-+.-.|+.. ++......-.+.+.++.|...+ ++-+-..| +...|...+..
T Consensus 163 iferW~~w~P~eq-------aW~sfI~fElRykeieraR~IY------------------erfV~~HP-~v~~wikyarF 216 (677)
T KOG1915|consen 163 IFERWMEWEPDEQ-------AWLSFIKFELRYKEIERARSIY------------------ERFVLVHP-KVSNWIKYARF 216 (677)
T ss_pred HHHHHHcCCCcHH-------HHHHHHHHHHHhhHHHHHHHHH------------------HHHheecc-cHHHHHHHHHH
Confidence 9999999999886 7766667777778888886555 77776675 45678888999
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHH--HcCCC
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHE---RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA--DSSQD 687 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~--~~~~~ 687 (889)
-.+.|+...|...|++|++.-.++.. .....|..-..+..++.|...|+-|+..-|.+ .--...+.+.. +-| +
T Consensus 217 E~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfG-d 295 (677)
T KOG1915|consen 217 EEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFG-D 295 (677)
T ss_pred HHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhc-c
Confidence 99999999999999999987665433 23444555566778999999999999988888 22222222222 222 1
Q ss_pred CCcchhhhhhHHHHhcchh-----h----hCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc---------h--HH
Q 002716 688 SSCSSTVVSLLEDALKCPS-----D----RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------R--AH 747 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~-----~----~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---------~--a~ 747 (889)
. .-+++++-.-. . .+..-++|...-.+-...|+.+.-.+.|++|+...|. . .|
T Consensus 296 ~-------~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 296 K-------EGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred h-------hhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 1 13444432211 1 1233567887777778889999999999999998876 2 22
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHhc----cCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 002716 748 QGLAR-VHFLKNNKTTAYEEMTKLIKKAR----NNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVL 818 (889)
Q Consensus 748 ~~La~-~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~ 818 (889)
.+.+. .-....+.+.+.+.|+.++++-| ..+.++...+.+ .+...|.+.+-.|+...|.+-- +...-.+-
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl-Fk~YIelE 447 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL-FKGYIELE 447 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH-HHHHHHHH
Confidence 23222 22456889999999999999988 334444444443 5889999999999999997643 33333456
Q ss_pred HhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q 002716 819 MDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDP 872 (889)
Q Consensus 819 ~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P 872 (889)
.+.++++.....|++-++..|.+ ..+...|.+-..+||.+.|...|+-|+....
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 67889999999999999999987 5555778888899999999999999988753
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=1.3e-09 Score=123.78 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
.+...+.+.++...|++++|++.+++....-. ...++..+|.++..+|++++|...|+.+|..+|++.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 34566777777788888888888877665555 566777778888888888888888888888888777
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.40 E-value=1.5e-10 Score=136.72 Aligned_cols=282 Identities=8% Similarity=-0.028 Sum_probs=208.0
Q ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhh
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 551 (889)
..+|.+..++..+...+...+++++|++.++.++...| ....++..|.+++..+++.++... .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 45788999999999999999999999999999999999 888889999999999998887766 6666655554
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
+| .++.++ .+.+...+++..+++.+|.+|-++|+.++|...|++++
T Consensus 98 ---------------~~-~~ve~~------------------~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 98 ---------------KW-AIVEHI------------------CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred ---------------ch-hHHHHH------------------HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 12 222223 44445567777799999999999999999999999999
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch
Q 002716 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (889)
Q Consensus 632 ~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~ 711 (889)
+.+|+++.+++++|..|... +.++|++++.+|+.
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~--------------------------------------------- 177 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY--------------------------------------------- 177 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999 99999999999872
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcC
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA-HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC 788 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a-~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 788 (889)
.+...+++.++..++.+.+..+|+ +. +.-+-.+....| +..+...+.-+.+..+ ...
T Consensus 178 ---------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~----------~~~ 237 (906)
T PRK14720 178 ---------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYK----------ALE 237 (906)
T ss_pred ---------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHh----------hhh
Confidence 144566888888888888888887 22 222333333333 4444444444433322 124
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
++++++..++.+++.+|.+..+...++.+|. ++|.. -..++..++... +-..-.++..|+..|++-+
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~----------l~~~~~~~~~~i~~fek~i 304 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSD----------IGNNRKPVKDCIADFEKNI 304 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhc----------cccCCccHHHHHHHHHHHe
Confidence 5688899999999999999999888888887 44443 444444443221 0011146677888888888
Q ss_pred ccCCCC
Q 002716 869 SVDPND 874 (889)
Q Consensus 869 ~l~P~~ 874 (889)
..+|.+
T Consensus 305 ~f~~G~ 310 (906)
T PRK14720 305 VFDTGN 310 (906)
T ss_pred eecCCC
Confidence 777765
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.38 E-value=9.3e-12 Score=129.07 Aligned_cols=291 Identities=18% Similarity=0.087 Sum_probs=180.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHH
Q 002716 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 517 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
+-|.-++++|++...+..|+++++...++..... ..|..||..|..+++|++|+++-.. | -.+.+.
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLS--AIYsQLGNAyfyL~DY~kAl~yH~h--------D----ltlar~ 87 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLS--AIYSQLGNAYFYLKDYEKALKYHTH--------D----LTLARL 87 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHH--HHHHHhcchhhhHhhHHHHHhhhhh--------h----HHHHHH
Confidence 4477778889999999999999988877775555 5677788888888888888766500 0 011222
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
+...-..+...-++|..+--+|.|++|+.+..+-+.... ....++|++|.+|...|+.-.-. .|.
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~---------~pe 158 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE---------APE 158 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC---------Chh
Confidence 222233344455778888888888888877655443321 23567777787777766421000 000
Q ss_pred hHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC----------chhHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----------RKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 671 ~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~----------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
. .| .....+...++.|.++|...+ ..+.++-+||+.|+-.|+|++|+..-+.-+.
T Consensus 159 e------------~g---~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ 223 (639)
T KOG1130|consen 159 E------------KG---AFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLE 223 (639)
T ss_pred h------------cc---cccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHH
Confidence 0 00 001122234444444444431 1257899999999999999999999888777
Q ss_pred cCcc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHH
Q 002716 741 IRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 812 (889)
Q Consensus 741 ~~p~--------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~ 812 (889)
+... +++.++|.+|...|+++.|+++|.+.+......+. +..+ +...+
T Consensus 224 ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---------r~vE---------------AQscY 279 (639)
T KOG1130|consen 224 IAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---------RTVE---------------AQSCY 279 (639)
T ss_pred HHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---------hhHH---------------HHHHH
Confidence 6544 89999999999999999999999988655331110 0011 22334
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADL-------HLLHLRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~l~l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
.+|+.|.-.+.+++||.+..+=+.+.... ...+.++..+..+|..++|+...++.++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56666666666666666666655443321 2223455555566666666666665554
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=1.4e-11 Score=117.42 Aligned_cols=123 Identities=15% Similarity=0.035 Sum_probs=68.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhh
Q 002716 501 EINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDR 580 (889)
Q Consensus 501 ~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~ 580 (889)
.++++++.+|+. +..+|..+...|++++|+..|++++..+|.+. .++..+|.++...|++++|+.++
T Consensus 15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~lg~~~~~~g~~~~A~~~y----- 81 (144)
T PRK15359 15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW------RAHIALAGTWMMLKEYTTAINFY----- 81 (144)
T ss_pred HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHhhHHHHHHHH-----
Confidence 344555555421 33345555555555555555555555555555 55555555555555555554444
Q ss_pred cccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002716 581 WSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (889)
Q Consensus 581 ~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~ 649 (889)
.++++.+|.++.+++++|.++...|++++|+..|+++++..|+++..+..+|.+..
T Consensus 82 -------------~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 82 -------------GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred -------------HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55555555555555666666666666666666666666666665555555555443
No 105
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.36 E-value=4.3e-12 Score=131.54 Aligned_cols=265 Identities=13% Similarity=0.010 Sum_probs=147.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHcCCC-C----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 486 ASSLMTKQNVEAALAEINRILGFKL-A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 486 a~~~~~~g~~~~Al~~l~kal~~~p-~----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
|.-+.+.|++...+..|+.+++... + ...|..+|..|+.++||++|+++...=|.+...-....+.+.+.-.||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4445556666666666666655443 1 2234445666666666666665554444333322233333344455566
Q ss_pred HHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhCC-------------------
Q 002716 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNC------------------- 619 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~------------------- 619 (889)
.....|.|++|+.+. ...+.-+-++ .-....+++++|.+|...|+
T Consensus 104 tlKv~G~fdeA~~cc--------------~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~ 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCC--------------FRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTS 169 (639)
T ss_pred hhhhhcccchHHHHH--------------HHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHH
Confidence 666666666664433 0101111111 11234455666666655443
Q ss_pred -HHHHHHHHHHHHHcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcC
Q 002716 620 -PEAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLKAYALADSS 685 (889)
Q Consensus 620 -~~~A~~~l~~al~~~p~------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~a~~~la~~~~~~~ 685 (889)
++.|.++|..-+++... ...++-++|..|+-.|+++.|+..-+.-+.+...+ .++.++|.++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 23344444444433222 12355677777777888888877777666554433 34555555555555
Q ss_pred CCCCcchhhhhhHHHHhcchhhhCc-------h---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------hHH
Q 002716 686 QDSSCSSTVVSLLEDALKCPSDRLR-------K---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAH 747 (889)
Q Consensus 686 ~~~~~~~~~~~~~~~Al~~~~~~~~-------~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--------~a~ 747 (889)
.++.|++.|+..+. + ++..+.||+.|.-..++++|+.++++-+.+... +++
T Consensus 250 -----------~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 250 -----------NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred -----------ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 44555555444311 1 456677788888888888888888777766543 677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 748 QGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 748 ~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
..||..+...|..++|+.+.++.++...
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7788888888888888777777665543
No 106
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=7.3e-09 Score=108.66 Aligned_cols=303 Identities=16% Similarity=0.097 Sum_probs=200.5
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhH--hhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcC
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSI--AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~ 459 (889)
++.....-|..-+..|+|.+|++...++-+-+..... ..-|++ .+.++.+
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~A---------------------------A~qrgd~- 134 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEA---------------------------AQQRGDE- 134 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHH---------------------------HHhcccH-
Confidence 3444556677888899999999999887665433322 222333 3334444
Q ss_pred ChhHHHHHHHHhhhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 460 EGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 460 ~~~~A~~~~~~al~~dp~-~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
+.+-..+.++.+..++ ....+..++.+....|++..|...+.++++..| ++..+.+...+|+..|++.+...+..+
T Consensus 135 --~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 135 --DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred --HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6667778888888433 344678899999999999999999999999999 999999999999999999999998888
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
+-+..--+.....+.+-.-..|.+... .+-+.+... ..-+++.-..-..++.+-..++.-+.+.
T Consensus 213 L~ka~~l~~~e~~~le~~a~~glL~q~-~~~~~~~gL---------------~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQAWEGLLQQA-RDDNGSEGL---------------KTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHccCCChHHHHHHHHHHHHHHHHHH-hccccchHH---------------HHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 766543322111111111111111111 111111110 0111222222223455556667777778
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhh
Q 002716 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (889)
Q Consensus 618 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~ 697 (889)
|+.++|.+..+.+++..-+.. ....++. ...++...=++..++.++..|+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~-------------------------- 327 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEKWLKQHPED-------------------------- 327 (400)
T ss_pred CChHHHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHHHHHhCCCC--------------------------
Confidence 888888888888777654422 2111111 23355555555555555544443
Q ss_pred HHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002716 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 698 ~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
+..+..||..++..+.|.+|..+|+.|++..|+ ..+..+|.++.+.|+..+|.+..++++..
T Consensus 328 --------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 --------------PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 357888999999999999999999999999999 88999999999999999999998888743
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.35 E-value=1.5e-11 Score=117.19 Aligned_cols=126 Identities=8% Similarity=-0.003 Sum_probs=117.1
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
...++++++++|++ ++.+|..+...|++++|+..|++++..+| +..++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45689999999986 56789999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHh
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~ 617 (889)
++. .+++.+|.++...|++++|+..+ .++++..|+++..+..+|.+....
T Consensus 90 ~~~------~a~~~lg~~l~~~g~~~eAi~~~------------------~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHP------EPVYQTGVCLKMMGEPGLAREAF------------------QTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCc------HHHHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHH
Confidence 999 89999999999999999997777 999999999999998888876544
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=2.1e-09 Score=107.61 Aligned_cols=369 Identities=14% Similarity=0.028 Sum_probs=230.8
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHH
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAAL 532 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~ 532 (889)
....| ..+|..+..-.+..|.+-.++..+|.+|+...+|..|...|++.-...| ........+...++.+.+..|+
T Consensus 22 ~d~ry---~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 22 RDARY---ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHhhH---HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34455 6777777777777777777777788888888888888888888777777 4445555567777777777777
Q ss_pred HHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC--CChHHHHHH
Q 002716 533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQ 610 (889)
Q Consensus 533 ~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p--~~~~~~~~l 610 (889)
.....+... ..... +...+-+.+.+..+++..+ +-.++.-| +.+....+.
T Consensus 99 rV~~~~~D~----~~L~~--~~lqLqaAIkYse~Dl~g~----------------------rsLveQlp~en~Ad~~in~ 150 (459)
T KOG4340|consen 99 RVAFLLLDN----PALHS--RVLQLQAAIKYSEGDLPGS----------------------RSLVEQLPSENEADGQINL 150 (459)
T ss_pred HHHHHhcCC----HHHHH--HHHHHHHHHhcccccCcch----------------------HHHHHhccCCCccchhccc
Confidence 776655432 11112 3444445555555555555 33334444 456778889
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCh---------------
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM----KRSF--------------- 671 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~p~~--------------- 671 (889)
|-+..+.|++++|++-|+.+++.+.-++-.-++++.++++.|+++.|+++..+++.. .|+.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 999999999999999999999999989999999999999999999999998887753 2321
Q ss_pred -----------HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch------hHHHHHHHHHHHHcCChHHHHHH
Q 002716 672 -----------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDLAADC 734 (889)
Q Consensus 672 -----------~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~------~~~~~~Lg~~y~~~g~~~~A~~~ 734 (889)
+++..++.++.+.+ .++.|.+.+.+.+.+ +..+.|++..-. .+++.+...-
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~-----------n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~K 298 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLR-----------NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEK 298 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcc-----------cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHH
Confidence 34445555555555 556665555554222 456666654432 3556666666
Q ss_pred HHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHH------HHHHHHh--c--CCHHHHHHHHHHHHh
Q 002716 735 YSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS------AYEKRSE--Y--CDRELTRADLEMVTQ 802 (889)
Q Consensus 735 ~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~--~--~~~~~A~~~l~~al~ 802 (889)
++-.+.++|- +...++-.+|++..-++-|.+.+. .+|.... .|..+.. + -..++|.+-+...-.
T Consensus 299 LqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA----En~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 299 LQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA----ENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh----hCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6666666655 777778788887777766655433 3332221 1111111 1 234444444333221
Q ss_pred cCCCChHHHHHHH-HHHHhC-----CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 803 LDPLRVYPYRYRA-AVLMDS-----HKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 803 l~p~~~~~~~~la-~~~~~~-----g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
. ...-++.+| .+.... .....|++.|+++++.. .+++...+++|....|+..+.+.|++..+.-.+|
T Consensus 375 ~---l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y--LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 375 M---LTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY--LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred H---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 1 111111122 121111 11234555555555432 2566678999999999999999999988765443
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=4.1e-09 Score=132.67 Aligned_cols=361 Identities=13% Similarity=0.030 Sum_probs=250.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~lg 559 (889)
.+...|..+...|++.+|+..+..+-........+...++.....|++..+...+..+-. ....++ ......+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~------~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP------RLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc------chHHHHH
Confidence 344556677888999988876655422211344555667778888888876666554310 111222 2334566
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC---------ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---------KGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
.++...|++++|..++ .++....+. .......+|.++...|++++|...++++
T Consensus 417 ~~~~~~g~~~~a~~~l------------------~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 478 (903)
T PRK04841 417 WLAQSQHRYSEVNTLL------------------ARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELA 478 (903)
T ss_pred HHHHHCCCHHHHHHHH------------------HHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 7778889999997777 433322111 2334456788889999999999999999
Q ss_pred HHcCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHcCCCCCcchhhhhhH
Q 002716 631 RQHAASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-------EAFFLKAYALADSSQDSSCSSTVVSLL 698 (889)
Q Consensus 631 l~~~p~~-----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-------~a~~~la~~~~~~~~~~~~~~~~~~~~ 698 (889)
+...+.. ..+...+|.++...|++++|...+++++...... .+...++.++...| .+
T Consensus 479 l~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----------~~ 547 (903)
T PRK04841 479 LAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----------FL 547 (903)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----------CH
Confidence 8854432 2355778999999999999999999998754322 34566788888888 66
Q ss_pred HHHhcchhhhCc------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc----c---hHHHHHHHHHHHcCC
Q 002716 699 EDALKCPSDRLR------------KGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----T---RAHQGLARVHFLKNN 759 (889)
Q Consensus 699 ~~Al~~~~~~~~------------~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p----~---~a~~~La~~~~~~g~ 759 (889)
++|...+.+... ....+..+|.++...|++++|...+++++.... . .++..+|.++...|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 666555554311 123456789999999999999999999987532 1 566678999999999
Q ss_pred HHHHHHHHHHHHHHhccCH---HH-H-------HHHHhcCCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhCCCH
Q 002716 760 KTTAYEEMTKLIKKARNNA---SA-Y-------EKRSEYCDRELTRADLEMVTQLDPLRVY----PYRYRAAVLMDSHKE 824 (889)
Q Consensus 760 ~~~A~~~~~~al~~~~~~~---~~-~-------~~~~~~~~~~~A~~~l~~al~l~p~~~~----~~~~la~~~~~~g~~ 824 (889)
+++|...+.++....+... .. . ......|+.+.|...+.......+.... .+..+|.++...|++
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 9999999999987644221 00 0 0111137888888887776553332222 246789999999999
Q ss_pred HHHHHHHHHHHhcCCC------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002716 825 NEAIAELSRAIAFKAD------L-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 825 ~eA~~~l~kal~~~p~------~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~ 876 (889)
++|...+++++..... . ......+..+...|+.++|...+++|+++......
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999999875322 1 23347788888999999999999999998755433
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=4.1e-09 Score=132.64 Aligned_cols=366 Identities=12% Similarity=-0.036 Sum_probs=249.3
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcc-hhHhhHHHHHhhcCCcHHHHHHHhhhh----hccC----cchhHH
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVI----SSVT----PLGWMY 452 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~~----~~g~~~ 452 (889)
....+...+..+...|++.+|..++..+-..... ......+......|+.......+..+- ...+ ..+|++
T Consensus 340 ~~~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 340 LPELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 3445667778888999999998877554221110 112234455566677665444443321 1111 235566
Q ss_pred HHHhhcCChhHHHHHHHHhhhcCCC---------ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--C----HHHHHH
Q 002716 453 QERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A----LECLEL 517 (889)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~al~~dp~---------~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~----~~~l~~ 517 (889)
...+.+ +++...+..+....+. .......+|.++...|++++|...+++++...+ . ..+...
T Consensus 420 ~~~g~~---~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 420 QSQHRY---SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHCCCH---HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 656666 7887777776543221 123344567888999999999999999987555 2 134567
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al 597 (889)
+|.++...|++++|...+++++..............++..++.++...|++++|..++ .+++
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~------------------~~al 558 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ------------------EKAF 558 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH------------------HHHH
Confidence 7888999999999999999999876554433343456778899999999999998877 4444
Q ss_pred hcC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 598 ESD--------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 598 ~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
... +.....+..+|.++...|++++|...+++++.... .....+..+|.++...|++++|...++++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 559 QLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 421 11234456789999999999999999999877532 13455667899999999999999999999
Q ss_pred HhcCCCh----HHHHH----HHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--------hHHHHHHHHHHHHcCCh
Q 002716 665 IQMKRSF----EAFFL----KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--------GQALNNLGSVYVDCGQL 728 (889)
Q Consensus 665 l~~~p~~----~a~~~----la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--------~~~~~~Lg~~y~~~g~~ 728 (889)
..+.+.. ..... ....+...| ..+.|.......... ...+..++.++...|++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTG-----------DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCC-----------CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 7653321 11010 112222334 444444443332111 22356789999999999
Q ss_pred HHHHHHHHHHHccCcc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHH
Q 002716 729 DLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (889)
Q Consensus 729 ~~A~~~~~~al~~~p~--------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 779 (889)
++|...+++++..... .++..+|.++...|+.++|...+.++++.....+.
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 9999999999876322 57888999999999999999999999998875543
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.28 E-value=1.7e-10 Score=116.03 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=128.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHh
Q 002716 486 ASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (889)
Q Consensus 486 a~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~ 565 (889)
+..|+..|+++......++... |. .-+...++.++++..++++++.+|++. .+|..+|.++...
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~------~~w~~Lg~~~~~~ 86 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL--------HQFASQQTPEAQLQALQDKIRANPQNS------EQWALLGEYYLWR 86 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc--------ccccCchhHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHC
Confidence 4567788888776544432221 10 011236788999999999999999999 8999999999999
Q ss_pred hchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHcCCCcHHHHH
Q 002716 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 566 ~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
|++++|...+ +++++.+|+++.++..+|.++ ...|+ +++|...++++++.+|+++.+++
T Consensus 87 g~~~~A~~a~------------------~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~ 148 (198)
T PRK10370 87 NDYDNALLAY------------------RQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALM 148 (198)
T ss_pred CCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence 9999997777 999999999999999999975 67787 59999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.+|..+...|++++|+..++++++..|..
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999988776
No 112
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=3.1e-09 Score=120.78 Aligned_cols=290 Identities=16% Similarity=0.044 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+.......++...|++++|++.+ .+....-++...+.-..|.++..+|++++|...|+..++
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L------------------~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~ 66 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHL------------------EKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID 66 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555667888899999996666 777777788888889999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhc-chh
Q 002716 633 HAASDHERLVYEGWILYDT-----SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK-CPS 706 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~-~~~ 706 (889)
.+|++...+..+..+.... .+.+.-...|++.....|...+...+...+.. | ..+..... +..
T Consensus 67 rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-g----------~~F~~~~~~yl~ 135 (517)
T PF12569_consen 67 RNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-G----------DEFKERLDEYLR 135 (517)
T ss_pred HCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC-H----------HHHHHHHHHHHH
Confidence 9999999888888777333 25667777888777666665222111111111 1 02222222 222
Q ss_pred hhCch--hHHHHHHHHHHHHcCChHHHHHHHHHHH---cc-------------Ccc---hHHHHHHHHHHHcCCHHHHHH
Q 002716 707 DRLRK--GQALNNLGSVYVDCGQLDLAADCYSNAL---KI-------------RHT---RAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 707 ~~~~~--~~~~~~Lg~~y~~~g~~~~A~~~~~~al---~~-------------~p~---~a~~~La~~~~~~g~~~~A~~ 765 (889)
..+.+ +..+.++-.+|....+..-....+.... +. .|. .+++.+|..|...|++++|+.
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 23333 5566777777665444333333333322 11 122 466889999999999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C
Q 002716 766 EMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK--A 839 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~--p 839 (889)
+++++|+..|.....|...+.. |++.+|...++.|..+|+.+-....-.+..+.+.|+.++|...+..-.... |
T Consensus 216 ~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 216 YIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 9999999999999999988883 999999999999999999999999999999999999999999887754433 2
Q ss_pred C--H---H-HHH--HHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 840 D--L---H-LLH--LRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 840 ~--~---~-~l~--l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
. . + .|+ -.|..|.+.|++..|++.|..+.+..
T Consensus 296 ~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 296 LSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 1 1 222 46777888899999999999988653
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=4.5e-10 Score=111.93 Aligned_cols=178 Identities=16% Similarity=0.014 Sum_probs=164.5
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..+...+-+....+|++... ..++..+...|+-+.++....++....| +...+..+|...+..|+|..|+..++++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34566667778889999999 8999999999999999999999888888 888888899999999999999999999999
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCH
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 620 (889)
..|++. +++..+|.+|.+.|+.++|..-+ .|++++.|.++.+..++|..|.-.|++
T Consensus 129 l~p~d~------~~~~~lgaaldq~Gr~~~Ar~ay------------------~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 129 LAPTDW------EAWNLLGAALDQLGRFDEARRAY------------------RQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred cCCCCh------hhhhHHHHHHHHccChhHHHHHH------------------HHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 999999 99999999999999999997777 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 621 ~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
+.|..++..+....+.+..+..+++.+...+|++++|.....+-
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999989999999999999999999998766543
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=4.8e-06 Score=92.12 Aligned_cols=494 Identities=10% Similarity=0.007 Sum_probs=269.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHhhhccc-ccChHHHHHHhcccch----hhhh----------hhcccccccHHHHHHHH-
Q 002716 291 LMGYAIEENSPVLAVSCLQVFLRELPD-CLNDERVVEIFSHANR----QHRS----------IMVGLASFSLYCLLSEV- 354 (889)
Q Consensus 291 ~~~~a~~~~~~~l~~~c~~~~~~~l~~-~l~~~~~~~ll~~~~~----~~r~----------~~~~~~~~~l~~~ls~v- 354 (889)
++.+...++-+ ..|+.+..+-+.- .-..++.++.|+..+. .+++ ...|+.+.-+|..+...
T Consensus 144 yl~Fv~~~~lP---ets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdli 220 (835)
T KOG2047|consen 144 YLKFVESHGLP---ETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLI 220 (835)
T ss_pred HHHHHHhCCCh---HHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHH
Confidence 44556665555 5666666555421 1124666677665432 2222 22444444455554433
Q ss_pred hcCCCCCchhHH-HHHHHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHH
Q 002716 355 AMNLDPRSDKTV-CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLW 433 (889)
Q Consensus 355 ~~~~~~~~~~~v-~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~ 433 (889)
+...+...+..+ ...+..+..-++.+ ...|.-|+..|++.|.|+.|.+.|+.++..--+.. ...+++-....+++
T Consensus 221 s~~p~~~~slnvdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 221 SQNPDKVQSLNVDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEE 296 (835)
T ss_pred HhCcchhcccCHHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHH
Confidence 333332222222 34444455455544 34677899999999999999999999987421111 11111111000000
Q ss_pred HH--HHHhhhhhccCcchhH---HHHHhhcC-ChhH-HHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 434 AY--EKLNSVISSVTPLGWM---YQERSLYC-EGDK-RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 434 A~--~~~~~~~~~~~~~g~~---~~~~~~~~-~~~~-A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
.. ..+.-..+...+..+. -.....+. .... -+-.=.-++..||++...|..+-.+ ..|+..+-+..|..++
T Consensus 297 ~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 297 SCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHH
Confidence 00 0000000000000000 00000000 0000 0001123457789999888876555 4688888899888886
Q ss_pred c-CCC------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhh
Q 002716 507 G-FKL------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (889)
Q Consensus 507 ~-~~p------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~ 579 (889)
. .+| -...+...|.+|...|+.+.|..+++++.+..-.....+. ..|..-|..-...++++.|.+.+
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa--~vw~~waemElrh~~~~~Al~lm---- 448 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA--EVWCAWAEMELRHENFEAALKLM---- 448 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH--HHHHHHHHHHHhhhhHHHHHHHH----
Confidence 4 455 2356677899999999999999999999987544332233 56667777778888888887766
Q ss_pred hcccccccchHHHHHHHHhcC------------C------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH
Q 002716 580 RWSSVDDIGSLSVIYQMLESD------------A------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (889)
Q Consensus 580 ~~~~~dd~~sl~~~~~al~~~------------p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 641 (889)
+.+...- | ....+|..++......|-++.....|++.+++.--.|...
T Consensus 449 --------------~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii 514 (835)
T KOG2047|consen 449 --------------RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII 514 (835)
T ss_pred --------------HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH
Confidence 3333211 1 1234566777777788888888889999999888888899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHHHH-HcCCCCCcchhhhhhHHHHhcchhhhCch------
Q 002716 642 VYEGWILYDTSHCEEGLRKAEESIQMKRS--F-EAFFLKAYALA-DSSQDSSCSSTVVSLLEDALKCPSDRLRK------ 711 (889)
Q Consensus 642 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~-~a~~~la~~~~-~~~~~~~~~~~~~~~~~~Al~~~~~~~~~------ 711 (889)
.+.|..+.....++++.+.|++.+.+-+- - +.|...-.... +.| .. .++.|...|++++..
T Consensus 515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg--g~-------klEraRdLFEqaL~~Cpp~~a 585 (835)
T KOG2047|consen 515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG--GT-------KLERARDLFEQALDGCPPEHA 585 (835)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc--CC-------CHHHHHHHHHHHHhcCCHHHH
Confidence 99999999888999999999999887643 2 44433222111 111 01 344444444444221
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHhccCH--HHHHHH
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHF-----LKNNKTTAYEEMTKLIKKARNNA--SAYEKR 784 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~-----~~g~~~~A~~~~~~al~~~~~~~--~~~~~~ 784 (889)
-..|...+..-..-|--..|+..|++|-..-+..-.+.+=.+|. .-|= ..-...|+++|+.-|+.. .+-...
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv-~~TR~iYekaIe~Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV-PRTREIYEKAIESLPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHhCChHHHHHHHHHH
Confidence 23344445555555677777777777665554421122222222 1121 122456667776666322 122222
Q ss_pred Hh----cCCHHHHHHHHHHHHhcC-CC-ChHHHHHHHHHHHhCCC
Q 002716 785 SE----YCDRELTRADLEMVTQLD-PL-RVYPYRYRAAVLMDSHK 823 (889)
Q Consensus 785 ~~----~~~~~~A~~~l~~al~l~-p~-~~~~~~~la~~~~~~g~ 823 (889)
+. .|..+.|...|.-.-++- |. ++..|..--..-.+.|+
T Consensus 665 AdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 22 266677777776666653 32 23333333334445565
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.2e-09 Score=105.75 Aligned_cols=180 Identities=13% Similarity=0.025 Sum_probs=153.6
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhH
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
+.|+.-..|-....+.+..|+.+-|...+++.....| +.....+.|..+...|++++|+++|+..+..||.+.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~------ 120 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT------ 120 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh------
Confidence 3444445566667778889999999999999877779 899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
..+..--.+...+|+.-+|++.+ ...++..+.+.++|..++.+|...|+|++|.-+|++.+-
T Consensus 121 v~~KRKlAilka~GK~l~aIk~l------------------n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKEL------------------NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHH------------------HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 34444445666788888886666 888999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCh-HHHHHH
Q 002716 633 HAASDHERLVYEGWILYDTS---HCEEGLRKAEESIQMKRSF-EAFFLK 677 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g---~~~eA~~~~~~al~~~p~~-~a~~~l 677 (889)
+.|.++..+..+|.+++.+| +++-|.++|.++++++|.+ .+++.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 99999999999999999887 5678999999999999966 555543
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.3e-08 Score=102.09 Aligned_cols=378 Identities=15% Similarity=0.099 Sum_probs=252.3
Q ss_pred HhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhh
Q 002716 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATA 473 (889)
Q Consensus 394 ~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~ 473 (889)
+...+|++|+++..--.+..+ .+..++. .+|..|.....| ..|..+|++.-.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-~~rAgLS------------------------lLgyCYY~~Q~f---~~AA~CYeQL~q 72 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-RSRAGLS------------------------LLGYCYYRLQEF---ALAAECYEQLGQ 72 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-cchHHHH------------------------HHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 577788888888765544332 1111111 245566666677 888899999999
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCcchhh
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP--DYRMFEG 550 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 550 (889)
+.|......++-|..++..+.+..|+.....+..... ...++.+.+.+.+..+|+..+....++. | +..
T Consensus 73 l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~A---- 144 (459)
T KOG4340|consen 73 LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEA---- 144 (459)
T ss_pred hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCcc----
Confidence 9999998889999999999999999999888766533 6678888899999999998887766553 4 233
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 551 ~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
......|.+.++.|+++.|++-| +.+++...-++.+-++++.++.+.|+++.|+++....
T Consensus 145 --d~~in~gCllykegqyEaAvqkF------------------qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 145 --DGQINLGCLLYKEGQYEAAVQKF------------------QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred --chhccchheeeccccHHHHHHHH------------------HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56777889999999999997777 9999999999999999999999999999999997776
Q ss_pred HHc----CCC----------------c---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHH
Q 002716 631 RQH----AAS----------------D---------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF------EAFF 675 (889)
Q Consensus 631 l~~----~p~----------------~---------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~------~a~~ 675 (889)
++. .|. + .++++..+.++++.|+++.|.+.+.. +-|.. ....
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLH 281 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhh
Confidence 653 332 1 24566678889999999988876543 33322 2334
Q ss_pred HHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-------hHHH
Q 002716 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------RAHQ 748 (889)
Q Consensus 676 ~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-------~a~~ 748 (889)
+++..-.+. ++.. -..+..=.+..++-+.+.+.|+-.+|.+..-|+.|...+- .+|+ ..++
T Consensus 282 N~Al~n~~~--~p~~------g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA----En~~lTyk~L~~Yly 349 (459)
T KOG4340|consen 282 NQALMNMDA--RPTE------GFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA----ENAHLTYKFLTPYLY 349 (459)
T ss_pred HHHHhcccC--Cccc------cHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh----hCcchhHHHhhHHHH
Confidence 444332222 1111 1111111222345567888999999999988888877653 3444 2222
Q ss_pred HHHH-HHHHcCCHHHHHHHHHHHHHHhcc----C-HHHHHHHHhc--CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 002716 749 GLAR-VHFLKNNKTTAYEEMTKLIKKARN----N-ASAYEKRSEY--CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMD 820 (889)
Q Consensus 749 ~La~-~~~~~g~~~~A~~~~~~al~~~~~----~-~~~~~~~~~~--~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~ 820 (889)
.|-. +-..+-..++|.+-+.++-..-.. . ..+...+..- .....|++.|..++++ ...+.+..|++|+.
T Consensus 350 ~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~ 426 (459)
T KOG4340|consen 350 DLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWN 426 (459)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc
Confidence 3322 223345666666655544322110 0 0011111110 1123455566666654 24567889999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCHHHHH
Q 002716 821 SHKENEAIAELSRAIAFKADLHLLH 845 (889)
Q Consensus 821 ~g~~~eA~~~l~kal~~~p~~~~l~ 845 (889)
..+|..+.+.|.+..++-.+...|.
T Consensus 427 ~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 427 LEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred ccccHHHHHHHHHHHhhhcccceee
Confidence 9999999999999998877764443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=6.4e-10 Score=111.79 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH-HHhccc--HHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF-FLALED--YQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~-~~~~g~--~~~A~~~~~~ 537 (889)
++++..++++++.+|+++.+|..+|.+|...|++++|+..|++++..+| +.+.+..+|.+ +...|+ +++|...+++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555 55555555554 244444 3555555555
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
+++.+|++. .++.++|..+...|++++|+.++
T Consensus 136 al~~dP~~~------~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 136 ALALDANEV------TALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHhCCCCh------hHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555 55555555555555555554444
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.16 E-value=1.7e-09 Score=127.52 Aligned_cols=148 Identities=14% Similarity=0.003 Sum_probs=85.8
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
+..+.......|.++.+++.+|.+....|.+++|...++.++++.| +..+...++.++.+.+.+++|+..+++++..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p 151 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS 151 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC
Confidence 3333333444555566666666666666666666666666666666 555555556666666666666666666666666
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHH
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 623 (889)
++. .+++.+|.+....|++++|+..| ++++..+|+++.++..+|.++...|+.++|
T Consensus 152 ~~~------~~~~~~a~~l~~~g~~~~A~~~y------------------~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 152 SSA------REILLEAKSWDEIGQSEQADACF------------------ERLSRQHPEFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred CCH------HHHHHHHHHHHHhcchHHHHHHH------------------HHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 665 55555556666666666664444 555555555555666666666666666666
Q ss_pred HHHHHHHHHcCCC
Q 002716 624 MRSLQLARQHAAS 636 (889)
Q Consensus 624 ~~~l~~al~~~p~ 636 (889)
...|+++++....
T Consensus 208 ~~~~~~a~~~~~~ 220 (694)
T PRK15179 208 RDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhhCc
Confidence 6666665555443
No 119
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=2e-07 Score=102.64 Aligned_cols=404 Identities=14% Similarity=0.065 Sum_probs=263.2
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
+|++++-.-.+-+..|..-...++.+|+...-...|+++|..-| ....+-..-......|-.+-++..|++-|+.+|
T Consensus 90 c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P 169 (835)
T KOG2047|consen 90 CFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP 169 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH
Confidence 35555555556667788888888999999999999999998888 444555555555667778899999999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHh----------------------hhhcccccc-cch---HHHHHHHH
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL----------------------YDRWSSVDD-IGS---LSVIYQML 597 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l----------------------~~~~~~~dd-~~s---l~~~~~al 597 (889)
....-+. ......+++++|.+-+.- ++-.+...+ ..+ -+.+.+.+
T Consensus 170 ~~~eeyi---------e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 170 EAREEYI---------EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HHHHHHH---------HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 8752211 233445555555443321 111111111 111 23445555
Q ss_pred hcCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cH-----HHHHHHHHHHHhcC-------------CHH
Q 002716 598 ESDAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DH-----ERLVYEGWILYDTS-------------HCE 655 (889)
Q Consensus 598 ~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~-----~~~~~lg~~~~~~g-------------~~~ 655 (889)
...|+. +.+|..||..|.+.|.++.|...|+++++.--. .. .+.+.-..+....+ +.+
T Consensus 241 ~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~ 320 (835)
T KOG2047|consen 241 RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLE 320 (835)
T ss_pred ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHH
Confidence 555544 457889999999999999999999999875432 11 12222222222222 233
Q ss_pred HHHHHHHHHHhc------------CCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC---chhHHHHHHH
Q 002716 656 EGLRKAEESIQM------------KRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL---RKGQALNNLG 719 (889)
Q Consensus 656 eA~~~~~~al~~------------~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~---~~~~~~~~Lg 719 (889)
-....|+..+.. +|++ ..|.....++.. ...+.+.-+.+|++...... .+...|..+|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~------~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG------NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC------ChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 344555555433 3444 334333333221 22344445555555443331 2278899999
Q ss_pred HHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-----------------
Q 002716 720 SVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN----------------- 776 (889)
Q Consensus 720 ~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~----------------- 776 (889)
..|...|+.+.|...|++|.+..-. ..|..-|..-....+++.|++.++++.-.-.+
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 9999999999999999999987643 67888888888999999999999988643221
Q ss_pred -CHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH---HHHH-HH
Q 002716 777 -NASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---HLLH-LR 847 (889)
Q Consensus 777 -~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~l~-l~ 847 (889)
...++..... +|-++.....|.+++.+.--.+....+.|..+....-+++|.+.|++.+.+.+=+ +++. .+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 1111222222 3788888999999999988888999999999999999999999999999987653 3332 22
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHccCCC-CHH-HHHHHHhhh
Q 002716 848 --AAFHEHTGDVLGALRDCRAALSVDPN-DQE-MLELHSRVY 885 (889)
Q Consensus 848 --a~~~~~~g~~~~A~~~~~~al~l~P~-~~~-~l~l~~~~~ 885 (889)
..-.......+.|...|++||+.-|. +.. +.-+|++..
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22223335789999999999998873 222 334455544
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.16 E-value=7.1e-10 Score=104.78 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=81.9
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~ 613 (889)
.+++++..+|++. .+...+|..+...|++++|..++ ++++..+|.++.++..+|.+
T Consensus 5 ~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~p~~~~~~~~la~~ 60 (135)
T TIGR02552 5 TLKDLLGLDSEQL------EQIYALAYNLYQQGRYDEALKLF------------------QLLAAYDPYNSRYWLGLAAC 60 (135)
T ss_pred hHHHHHcCChhhH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHHhCCCcHHHHHHHHHH
Confidence 4566677777666 56666777777777777775555 66677777777777777777
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+...|++++|...++++++.+|.++..++.+|.++...|++++|+..++++++.+|++
T Consensus 61 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 61 CQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 7777777777777777777777777777777777777777777777777777777766
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.14 E-value=8.5e-09 Score=122.19 Aligned_cols=266 Identities=11% Similarity=0.016 Sum_probs=199.4
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHH
Q 002716 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 451 ~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~ 530 (889)
.|...+.+ ++|+...+.+++.+|+....|+.+|.++...+++.+|... .+++. .....++ .
T Consensus 40 ~~~~~~~~---deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-------------~~~~~~~-~ 100 (906)
T PRK14720 40 AYKSENLT---DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-------------FSQNLKW-A 100 (906)
T ss_pred HHHhcCCH---HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-------------cccccch-h
Confidence 34445555 8899999999999999999999999999999998777655 44333 3333344 4
Q ss_pred HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH
Q 002716 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l 610 (889)
++.++-+.+...+++. .+++.+|.+|.+.|++++|...+ +++++.+|+++.+..++
T Consensus 101 ~ve~~~~~i~~~~~~k------~Al~~LA~~Ydk~g~~~ka~~~y------------------er~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 101 IVEHICDKILLYGENK------LALRTLAEAYAKLNENKKLKGVW------------------ERLVKADRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHHHhhhhhh------HHHHHHHHHHHHcCChHHHHHHH------------------HHHHhcCcccHHHHHHH
Confidence 5555555666677777 79999999999999999995555 99999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH-HHHHcCCCC
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY-ALADSSQDS 688 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~-~~~~~~~~~ 688 (889)
|..|... +.++|+.++.+|+.. ++..+++.++.+.+.+.+..+|++ +.+..+-. +....+
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~--- 218 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE--- 218 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc---
Confidence 9999999 999999999999876 667789999999999999999998 43333222 211111
Q ss_pred CcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEE 766 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~ 766 (889)
.-+-...+.-+-..|...++|++++..++.+++.+|+ .+...++.+|. +.|.. ...
T Consensus 219 -------------------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~ 276 (906)
T PRK14720 219 -------------------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSL 276 (906)
T ss_pred -------------------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cch
Confidence 0011356667778899999999999999999999998 77888888887 44432 444
Q ss_pred HHHHHHHhccCHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCC
Q 002716 767 MTKLIKKARNNASAYEKRSE-YCDRELTRADLEMVTQLDPLR 807 (889)
Q Consensus 767 ~~~al~~~~~~~~~~~~~~~-~~~~~~A~~~l~~al~l~p~~ 807 (889)
++..++... .+. ...+..++..|++-+..++.+
T Consensus 277 ~ee~l~~s~--------l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 277 LEDYLKMSD--------IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHhc--------cccCCccHHHHHHHHHHHeeecCCC
Confidence 444444322 000 024477888888888776654
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=5.8e-09 Score=104.09 Aligned_cols=181 Identities=13% Similarity=-0.049 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHH
Q 002716 495 VEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (889)
Q Consensus 495 ~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~ 573 (889)
...+...+-+....+| +... ...+..+...|+-+.+.....++...+|.+. ..+..+|......|++.+|+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~ 121 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVS 121 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHH
Confidence 3346666667777888 7777 8889999999999999999999999999988 666678999999999999966
Q ss_pred HHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 002716 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (889)
Q Consensus 574 ~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 653 (889)
.+ +++....|++..+|..+|.+|.+.|+++.|...|.+++++.|.++.+..++|..++-.|+
T Consensus 122 ~~------------------rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 122 VL------------------RKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HH------------------HHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 66 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch
Q 002716 654 CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (889)
Q Consensus 654 ~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~ 711 (889)
++.|..++..+....+.+ ....+++.+....| .+++|.++..+....
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g-----------~~~~A~~i~~~e~~~ 231 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQG-----------DFREAEDIAVQELLS 231 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC-----------ChHHHHhhccccccc
Confidence 999999999998877766 88889999999999 888888888776544
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.12 E-value=2.1e-09 Score=101.57 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=72.9
Q ss_pred HHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhh
Q 002716 501 EINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (889)
Q Consensus 501 ~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~ 579 (889)
.+++++..+| +......+|..++..|++++|+..+++++..+|.+. .++..+|.++...|++++|..++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~---- 74 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS------RYWLGLAACCQMLKEYEEAIDAY---- 74 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4555666666 555566666666666666666666666666666665 56666666666666666665555
Q ss_pred hcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 002716 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 580 ~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 639 (889)
+++++.+|.++..++.+|.++...|++++|+..++++++.+|++..
T Consensus 75 --------------~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 75 --------------ALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred --------------HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 6666666666666666666666666666666666666666665543
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=1.7e-08 Score=99.53 Aligned_cols=176 Identities=20% Similarity=0.149 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+..........|+.+-|..+++++....|+.. ....+-|..+...|+|++|++++
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~------RV~~lkam~lEa~~~~~~A~e~y----------------- 109 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK------RVGKLKAMLLEATGNYKEAIEYY----------------- 109 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh------hHHHHHHHHHHHhhchhhHHHHH-----------------
Confidence 3444556667778999999999999999999998 77788889999999999997777
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~- 671 (889)
+..++-+|.+..++.+.-.+...+|+.-+|++.+...++..+.++++|..++.+|...|++++|.-++++.+-++|-+
T Consensus 110 -~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 110 -ESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred -HHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 999999999999999988899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHH
Q 002716 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQG 749 (889)
Q Consensus 672 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~ 749 (889)
-.+..+|.++.-.| . ..++.-|.++|.++++++|. .++++
T Consensus 189 l~f~rlae~~Yt~g----------------------------------g----~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQG----------------------------------G----AENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHHHHHh----------------------------------h----HHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 44444555544443 2 35677899999999999996 55554
Q ss_pred H
Q 002716 750 L 750 (889)
Q Consensus 750 L 750 (889)
+
T Consensus 231 I 231 (289)
T KOG3060|consen 231 I 231 (289)
T ss_pred H
Confidence 4
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=2.7e-08 Score=111.46 Aligned_cols=215 Identities=13% Similarity=0.016 Sum_probs=148.2
Q ss_pred HhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHH
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~ 467 (889)
.+|..++..|-..+|...|++. +.+.++..+|...|+. .+|...
T Consensus 403 ~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~------------------------------~kaeei 446 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQH------------------------------GKAEEI 446 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhccc------------------------------chHHHH
Confidence 4556666666666666666553 2233344444444443 444444
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 468 ~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
..+-++ .|+++..|..+|.+.....-|++|.+..+..- ..+....|......++|+++.+.++..++++|-..
T Consensus 447 ~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~- 519 (777)
T KOG1128|consen 447 NRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS-----ARAQRSLALLILSNKDFSEADKHLERSLEINPLQL- 519 (777)
T ss_pred HHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhh-----HHHHHhhccccccchhHHHHHHHHHHHhhcCccch-
Confidence 444455 56666677777777777766777776665532 23344445555567788888888888888888777
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHH
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 627 (889)
..|+.+|.++.+.+++..|.+.| ...+..+|++..+|.+++..|.+.|+..+|...+
T Consensus 520 -----~~wf~~G~~ALqlek~q~av~aF------------------~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 520 -----GTWFGLGCAALQLEKEQAAVKAF------------------HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred -----hHHHhccHHHHHHhhhHHHHHHH------------------HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 77888888888888888886666 7788888888888888888888888888888888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 628 ~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
.+|++.+-++...|-+...+..+.|++++|++.|.+.+.+.
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 88888777777777777777788888888888888777654
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.10 E-value=3e-09 Score=125.38 Aligned_cols=133 Identities=9% Similarity=-0.084 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
..+++.++|.+....|.+++|...++.++++.|++. .+...++.+..+.+++++|..++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~------~a~~~~a~~L~~~~~~eeA~~~~--------------- 143 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS------EAFILMLRGVKRQQGIEAGRAEI--------------- 143 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH------HHHHHHHHHHHHhccHHHHHHHH---------------
Confidence 344444445555555555555555555555555444 44444444445555555553333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
++++..+|+++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++.
T Consensus 144 ---~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 144 ---ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred ---HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555554444444445555555555555555555555544443
No 127
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=5.4e-10 Score=113.31 Aligned_cols=118 Identities=19% Similarity=0.214 Sum_probs=104.5
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF 521 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~ 521 (889)
+..+..|.-..+.+.| .+|+..|.+||+++|+++..|.++|.+|.+.|.++.|++.++.++.++| ...+|..+|.+
T Consensus 82 E~LK~eGN~~m~~~~Y---~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDY---QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA 158 (304)
T ss_pred HHHHHHHHHHHHhhhH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4455677778888999 9999999999999999999999999999999999999999999999999 88999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~ 569 (889)
|+.+|++++|+..|+++|.++|++. .....|..+....++..
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne------~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNE------SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcH------HHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998 45555555555555433
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=5.1e-09 Score=117.09 Aligned_cols=221 Identities=17% Similarity=0.056 Sum_probs=160.2
Q ss_pred CCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 002716 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (889)
Q Consensus 476 p~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 555 (889)
|.....-..+|.+++..|-...|+..+++. ..+-....||...|+-.+|..+..+-++. |+++ ..|
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~------~ly 460 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELEK-DPDP------RLY 460 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcc------hhH
Confidence 444555678899999999999999999985 45556778888899999999999999994 4444 477
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
..+|.+.....-|++|.++. ++ .++.+...+|......+++.++.+.++..++++|
T Consensus 461 c~LGDv~~d~s~yEkawEls------------------n~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELS------------------NY------ISARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred HHhhhhccChHHHHHHHHHh------------------hh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 88888887777777775555 22 2333556677777788999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHH
Q 002716 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 714 (889)
Q Consensus 636 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~ 714 (889)
-....|+.+|.+..+.++++.|...|..++.++|++ ++|.+++.++...+ ...++...+.+|+++-.+. ...
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~----~k~ra~~~l~EAlKcn~~~---w~i 589 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK----KKKRAFRKLKEALKCNYQH---WQI 589 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh----hhHHHHHHHHHHhhcCCCC---Cee
Confidence 999999999999999999999999999999999998 76666666655554 1112222333333333111 234
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
|-|.-.+..+.|.+++|++.|.+.+.+
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHh
Confidence 444444455555555555555555444
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.2e-09 Score=110.97 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=108.8
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
-+..-|.-+++.++|.+|+..|.++|.++| ++-.|..++.+|.++|.++.|+++++.++.+||.+. ++|..||
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys------kay~RLG 156 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS------KAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH------HHHHHHH
Confidence 456779999999999999999999999999 999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
.+|..+|++.+|++.| +++|+++|++.....+|..+-..+++..
T Consensus 157 ~A~~~~gk~~~A~~ay------------------kKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAY------------------KKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHccCcHHHHHHHH------------------HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999997777 9999999999988888888777777665
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=8e-08 Score=103.70 Aligned_cols=148 Identities=17% Similarity=0.055 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
.+.+..+..++..|++++|...+ ...+...|+|+..+...+.++.+.|+.++|.+.+++++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l------------------~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLL------------------QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 57777777777777777775555 777777777777777777888888888888888888888
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~ 711 (889)
..|+.+....++|..+.+.|++.+|+..++..+..+|++ ..|..++.++..+|...
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~----------------------- 425 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA----------------------- 425 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH-----------------------
Confidence 888777777777888888888888888877777777777 77777777777776222
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
.+....+..|...|++++|+..+..+.+..
T Consensus 426 -~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 -EALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455566777778888888888888777654
No 131
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=3.4e-08 Score=94.90 Aligned_cols=217 Identities=16% Similarity=0.071 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
.+..++.+|..|-..|-..-|.-+|.+++.+.|+-+ .+++.+|..+...|+++.|.+.|
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~------~vfNyLG~Yl~~a~~fdaa~eaF--------------- 122 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP------EVFNYLGIYLTQAGNFDAAYEAF--------------- 122 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH------HHHHHHHHHHHhcccchHHHHHh---------------
Confidence 344556667777777777777777777777777777 67777777777777777775555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCC
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK-AEESIQMKR 669 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~-~~~al~~~p 669 (889)
...++++|....+..+.|..+..-|++.-|.+.+.+..+.+|++|-.-..+=..- ..-+..+|... .+++-..+.
T Consensus 123 ---ds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 123 ---DSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDK 198 (297)
T ss_pred ---hhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccH
Confidence 6777777777777777777777777777777777777777777664332221111 12234444433 333443333
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-
Q 002716 670 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT- 744 (889)
Q Consensus 670 ~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~- 744 (889)
+.-.|.....-+.... .....+.+....+.. -.-.++++.||..|...|+.++|...|+-|+..+--
T Consensus 199 e~WG~~iV~~yLgkiS--------~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 199 EQWGWNIVEFYLGKIS--------EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred hhhhHHHHHHHHhhcc--------HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 3322222222222211 000222222222211 011578899999999999999999999988876532
Q ss_pred -----hHHHHHHHHHHHcCCH
Q 002716 745 -----RAHQGLARVHFLKNNK 760 (889)
Q Consensus 745 -----~a~~~La~~~~~~g~~ 760 (889)
.+...|+.+...+.+.
T Consensus 271 fVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 271 FVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHHHHHHhccccchh
Confidence 5555666665555444
No 132
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=5e-08 Score=103.79 Aligned_cols=237 Identities=16% Similarity=0.040 Sum_probs=159.1
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h-HHHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--F-EAFFLKAYA 680 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~-~a~~~la~~ 680 (889)
......+.+.++.+|+++..+..+... .+....+...++..+...++.+.++..+++.+..... + ......|.+
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 345567778888888888766555331 2223445555565555555677777777665543322 3 333445566
Q ss_pred HHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHH--HHcC
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVH--FLKN 758 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~--~~~g 758 (889)
+...| .+++|++.+.+. ...+.......+|..+++++.|.+.++++-+.+.+.....++..+ ...|
T Consensus 112 ~~~~~-----------~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 112 LFHEG-----------DYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HCCCC-----------HHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHcC-----------CHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 66667 888888888877 334556666778888888888888888888888776666655533 3334
Q ss_pred CHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002716 759 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838 (889)
Q Consensus 759 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 838 (889)
. ..+.+|...|+...+..+..+..+..+|.+.+.+|++++|...+++++..+
T Consensus 180 ~----------------------------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 180 G----------------------------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp T----------------------------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred c----------------------------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 2 123556666666556556677888899999999999999999999999999
Q ss_pred CCH-HHHHHHHHHHHHcCCH-HHHHHHHHHHHccCCCCHHHHHHHHh
Q 002716 839 ADL-HLLHLRAAFHEHTGDV-LGALRDCRAALSVDPNDQEMLELHSR 883 (889)
Q Consensus 839 p~~-~~l~l~a~~~~~~g~~-~~A~~~~~~al~l~P~~~~~l~l~~~ 883 (889)
|++ ..+..+..+...+|+. +.+.+.+.+....+|+|+.+.++-.+
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~ 278 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK 278 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 986 5555777877777888 66777888888899999998877554
No 133
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=2.5e-08 Score=106.08 Aligned_cols=257 Identities=17% Similarity=0.121 Sum_probs=163.5
Q ss_pred HHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHH
Q 002716 487 SSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (889)
Q Consensus 487 ~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~ 564 (889)
+-++-.|+|.+++..++ ....++ .........+.+..+|+++..+......- .|.. .+...++.....
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l-------~av~~la~y~~~ 78 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL-------QAVRLLAEYLSS 78 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC-------HHHHHHHHHHCT
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH-------HHHHHHHHHHhC
Confidence 45567899999998777 444555 55666777888899999887665443311 2222 355555544433
Q ss_pred hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002716 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 565 ~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
.++.+.++ ..+.+.+... +.++.+....|.++...|++++|++.+.+. .+.+...
T Consensus 79 ~~~~e~~l------------------~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~a 135 (290)
T PF04733_consen 79 PSDKESAL------------------EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLA 135 (290)
T ss_dssp STTHHCHH------------------HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHH
T ss_pred ccchHHHH------------------HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHH
Confidence 23333332 2223333222 234556667778888899999999888753 5577777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y 722 (889)
..-.++...++++.|.+.++.+-+.+.+. ...+++. +|.++ +
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-~l~qLa~----------------------------------awv~l---~ 177 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDS-ILTQLAE----------------------------------AWVNL---A 177 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCH-HHHHHHH----------------------------------HHHHH---H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcH-HHHHHHH----------------------------------HHHHH---H
Confidence 78889999999999999999888776654 1122221 12111 1
Q ss_pred HHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 723 VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMV 800 (889)
Q Consensus 723 ~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~a 800 (889)
...+++.+|...|+...+..+. ..++++|.++..+|++ ++|...+.++
T Consensus 178 ~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~------------------------------~eAe~~L~~a 227 (290)
T PF04733_consen 178 TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY------------------------------EEAEELLEEA 227 (290)
T ss_dssp HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H------------------------------HHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH------------------------------HHHHHHHHHH
Confidence 1124688999999997776544 7778899999999999 5555556666
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHHhcCCCHHHH
Q 002716 801 TQLDPLRVYPYRYRAAVLMDSHKE-NEAIAELSRAIAFKADLHLL 844 (889)
Q Consensus 801 l~l~p~~~~~~~~la~~~~~~g~~-~eA~~~l~kal~~~p~~~~l 844 (889)
++.+|.++.++.+++.+....|+. +.+..++++....+|+.+.+
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 677778888888888888888877 55666777777778875444
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.93 E-value=1.8e-07 Score=101.07 Aligned_cols=134 Identities=18% Similarity=0.075 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
.....+..+..++..|++++|+..++.++...|+|+ ..+...+.++...++..+|.+.+
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~------~~~~~~~~i~~~~nk~~~A~e~~--------------- 363 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP------YYLELAGDILLEANKAKEAIERL--------------- 363 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCChHHHHHHH---------------
Confidence 566666777777777777777777777777777777 45556667777777777775555
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++++..+|..+.+..++|.+|++.|++.+|+..++..+..+|+++..|..+|..|..+|+..+|...+-+.....
T Consensus 364 ---~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~ 438 (484)
T COG4783 364 ---KKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA 438 (484)
T ss_pred ---HHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence 777777777777777777777777777777777777777777777777777777777777777666665554433
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.91 E-value=2.6e-08 Score=93.14 Aligned_cols=100 Identities=9% Similarity=-0.073 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
..+.++..|..++..|++++|...|+-+...+|.+. ..++.||.++...|+|.+|+..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~------~y~~gLG~~~Q~~g~~~~AI~aY--------------- 92 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF------DYWFRLGECCQAQKHWGEAIYAY--------------- 92 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHHhhHHHHHHHH---------------
Confidence 445555555555555555555555555555555555 45555555555555555553333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
.+++.++|+++..+++.|.+++..|+.+.|.+.|+.++...
T Consensus 93 ---~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 93 ---GRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---HHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555443
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.90 E-value=2.8e-08 Score=93.02 Aligned_cols=98 Identities=8% Similarity=-0.082 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+..+.+|......|++++|...| +-....+|.+...|+++|.++..+|++++|+..|.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f------------------~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLF------------------QLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66777777777777777776666 777777777777777777777777777777777777777
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++|+++..+.+.|.++...|+.+.|.+.|+.++...
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777777777665
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=2.3e-07 Score=94.00 Aligned_cols=183 Identities=14% Similarity=0.012 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
.+..++..|...+..|+|.+|+..|++++...|...... .+...+|.++...|++++|...+
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~---~A~l~la~a~y~~~~y~~A~~~~--------------- 65 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAP---QAQLMLAYAYYKQGDYEEAIAAY--------------- 65 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHH---HHHHHHHHHHHHTT-HHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHcCCHHHHHHHH---------------
Confidence 445666677777777777777777777777777665221 24555555555555555554444
Q ss_pred HHHHHHHhcCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 591 SVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 591 ~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
++.++..|.++ .+++.+|.++..... ..+ ....+++...+|+..|+..+..
T Consensus 66 ---~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~---------~~~--------------~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 66 ---ERFIKLYPNSPKADYALYMLGLSYYKQIP---------GIL--------------RSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp ---HHHHHH-TT-TTHHHHHHHHHHHHHHHHH---------HHH---------------TT---HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCcchhhHHHHHHHHHHHhCc---------cch--------------hcccChHHHHHHHHHHHHHHHH
Confidence 55555555443 345555554433310 000 1123345567888899999888
Q ss_pred CCCh----HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 668 KRSF----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 668 ~p~~----~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
.|+. .+...+..+-... +.--..+|..|.+.|.+..|+..++.+++..|
T Consensus 120 yP~S~y~~~A~~~l~~l~~~l---------------------------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRL---------------------------AEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred CcCchHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8887 2222222221111 13446689999999999999999999999999
Q ss_pred c-----hHHHHHHHHHHHcCCHHHHH
Q 002716 744 T-----RAHQGLARVHFLKNNKTTAY 764 (889)
Q Consensus 744 ~-----~a~~~La~~~~~~g~~~~A~ 764 (889)
+ .++..++..|...|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8 78899999999999987443
No 138
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.86 E-value=1.6e-07 Score=95.16 Aligned_cols=160 Identities=11% Similarity=0.022 Sum_probs=119.7
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHH
Q 002716 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (889)
Q Consensus 478 ~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 553 (889)
.+..++..|..++..|+|.+|+..|++++...| ...+.+.+|.+++..|++++|+..+++.++..|+++... .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---~ 80 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---Y 80 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH---H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---h
Confidence 356788999999999999999999999998877 578889999999999999999999999999999988432 4
Q ss_pred HHHHHHHHHHHhhc-----------hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH----------------
Q 002716 554 ASQLHMLVREHIDN-----------WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL---------------- 606 (889)
Q Consensus 554 a~~~lg~~~~~~~~-----------~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~---------------- 606 (889)
+++.+|.++..... ..+|...| +..+...|+...+
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~------------------~~li~~yP~S~y~~~A~~~l~~l~~~la~ 142 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEF------------------EELIKRYPNSEYAEEAKKRLAELRNRLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHH------------------HHHHHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHH------------------HHHHHHCcCchHHHHHHHHHHHHHHHHHH
Confidence 78888888765432 23554444 7777888876532
Q ss_pred -HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHhcCCHHHHH
Q 002716 607 -YFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGL 658 (889)
Q Consensus 607 -~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~lg~~~~~~g~~~eA~ 658 (889)
-+.+|..|.+.|.+..|+..++.+++..|+.. +++..++..+...|..+.|.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23567788888888888888888888888753 56778888888888877443
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.85 E-value=8.1e-07 Score=91.71 Aligned_cols=170 Identities=14% Similarity=0.056 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
-....|.-++...++++|+....+.+..-. ....+--+..+...+|.|++++..--..+....+........+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888999999999888876544 2223333455677888998888765555544333333334447888
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC---C--CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD---A--PKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~---p--~~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
.++..+....++.+++.+- .-.+... | .-......+|.++..++.+++++++|+.|+
T Consensus 88 nlar~~e~l~~f~kt~~y~------------------k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~ 149 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYC------------------KTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKAL 149 (518)
T ss_pred HHHHHHHHHHHhhhHHHHH------------------HHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 8899999888888885554 3333221 1 122456678999999999999999999999
Q ss_pred HcCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 632 QHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 632 ~~~p~~~------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
+...++. .+...+|..+....++++|+-+..+|.++-
T Consensus 150 ~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 150 RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 8754433 467889999999999999999999888654
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.85 E-value=3.2e-07 Score=95.24 Aligned_cols=179 Identities=9% Similarity=0.000 Sum_probs=132.4
Q ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-C---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhH
Q 002716 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 477 ~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~---~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
..+..++..|..++..|+|++|+..|++++...| + ..+.+.+|.+++..+++++|+..+++.++.+|+++...
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~--- 106 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID--- 106 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH---
Confidence 3455678899999999999999999999999999 3 33457889999999999999999999999999998442
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhc--ccccc---cchHHHHHHHHhcCCCChHH-----------------HHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRW--SSVDD---IGSLSVIYQMLESDAPKGVL-----------------YFRQ 610 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~--~~~dd---~~sl~~~~~al~~~p~~~~~-----------------~~~l 610 (889)
.+++.+|.++...+.- ++..+... ...|. ..++..+++.++..|+...+ -+..
T Consensus 107 ~a~Y~~g~~~~~~~~~-----~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~i 181 (243)
T PRK10866 107 YVLYMRGLTNMALDDS-----ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSV 181 (243)
T ss_pred HHHHHHHHhhhhcchh-----hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888876444310 00000000 00000 01244557888888876422 2356
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 611 SLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 611 a~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
|..|.+.|.+..|+.-++.+++..|+ ..++++.++..|...|..++|......
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77889999999999999999998876 467889999999999999998876653
No 141
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=5.5e-07 Score=93.49 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH---HHHHHHHHHhCCHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY---FRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~l~~ 629 (889)
...+..|......|++++|+..| ++.+...|..+.+. +.+|.+|.+.+++++|+..+++
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f------------------~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~ 94 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQL------------------EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDR 94 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45666777778888888886666 88888888776554 7888888888888888888888
Q ss_pred HHHcCCCc---HHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHc
Q 002716 630 ARQHAASD---HERLVYEGWILYDTS------------------HCEEGLRKAEESIQMKRSF----EAFFLKAYALADS 684 (889)
Q Consensus 630 al~~~p~~---~~~~~~lg~~~~~~g------------------~~~eA~~~~~~al~~~p~~----~a~~~la~~~~~~ 684 (889)
.++..|++ +.+++.+|.++...+ ...+|+..|++.++..|+. ++...+..+....
T Consensus 95 fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 95 FIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 88887765 456777777654433 1346778888888888876 3333233222221
Q ss_pred CCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCC
Q 002716 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNN 759 (889)
Q Consensus 685 ~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~ 759 (889)
+.--..+|..|.+.|.|..|+.-++.+++..|+ +++..++..|...|.
T Consensus 175 ---------------------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 175 ---------------------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred ---------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 133457889999999999999999999999988 889999999999999
Q ss_pred HHHHHHHHHHH
Q 002716 760 KTTAYEEMTKL 770 (889)
Q Consensus 760 ~~~A~~~~~~a 770 (889)
.++|.+....+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99988766544
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.83 E-value=4.9e-08 Score=107.70 Aligned_cols=112 Identities=16% Similarity=0.063 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+...|...+..|+|++|+..|+++++++|++. .++..+|.++...|++++|+..+ .
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~------~a~~~~a~~~~~~g~~~eAl~~~------------------~ 60 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA------ELYADRAQANIKLGNFTEAVADA------------------N 60 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHH------------------H
Confidence 34456666677777777777777777777776 66667777777777777775554 7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 650 (889)
++++++|.++.+++++|.++..+|++++|+..|+++++.+|+++.+...++.+...
T Consensus 61 ~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 61 KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777766666655443
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=4.5e-06 Score=94.25 Aligned_cols=309 Identities=13% Similarity=0.043 Sum_probs=164.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVRE 563 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~ 563 (889)
..|.+..+.|..++|...|.+.-.. -++-.+|...|.+++|.++-+.-=++ + .+ ..++..+.-..
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR~-------DLlNKlyQs~g~w~eA~eiAE~~DRi---H----Lr-~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKRY-------DLLNKLYQSQGMWSEAFEIAETKDRI---H----LR-NTYYNYAKYLE 869 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHhcccHHHHHHHHhhccce---e----hh-hhHHHHHHHHH
Confidence 3455566677777777777766442 24455666667776666554321111 1 11 24555555555
Q ss_pred HhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHH
Q 002716 564 HIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (889)
Q Consensus 564 ~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 643 (889)
..++.+.|+++|+..+. . .-.+-+++..+| .+++.|-+ . ..++..|..
T Consensus 870 ar~Di~~AleyyEK~~~-------h-afev~rmL~e~p--------------------~~~e~Yv~---~-~~d~~L~~W 917 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGV-------H-AFEVFRMLKEYP--------------------KQIEQYVR---R-KRDESLYSW 917 (1416)
T ss_pred hhccHHHHHHHHHhcCC-------h-HHHHHHHHHhCh--------------------HHHHHHHH---h-ccchHHHHH
Confidence 56666666555510000 0 000011122121 12211111 1 123455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHH
Q 002716 644 EGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 723 (889)
Q Consensus 644 lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~ 723 (889)
-|..+...|+.+.|+.+|..|- -|+.+..+..-+| +.++|-.+.++.-+++ +-+.||..|.
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~-------D~fs~VrI~C~qG-----------k~~kAa~iA~esgd~A-AcYhlaR~YE 978 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAK-------DYFSMVRIKCIQG-----------KTDKAARIAEESGDKA-ACYHLARMYE 978 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhh-------hhhhheeeEeecc-----------CchHHHHHHHhcccHH-HHHHHHHHhh
Confidence 6777778888888888888775 5666666666666 6666666666654443 6677888888
Q ss_pred HcCChHHHHHHHHHHHccCc------c----------------hHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhccCHHH
Q 002716 724 DCGQLDLAADCYSNALKIRH------T----------------RAHQGLARVHFLKN-NKTTAYEEMTKLIKKARNNASA 780 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p------~----------------~a~~~La~~~~~~g-~~~~A~~~~~~al~~~~~~~~~ 780 (889)
..|++.+|+..|.+|-.... + .-....|+.|...| +.+.|..+|.++=-...
T Consensus 979 n~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~k----- 1053 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGK----- 1053 (1416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHH-----
Confidence 88888888888877643321 1 11122344555555 55566555554411100
Q ss_pred HHHHHh-c-CCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHH------Hhc--------------
Q 002716 781 YEKRSE-Y-CDRELTRADLEMVTQLDP-LRVYPYRYRAAVLMDSHKENEAIAELSRA------IAF-------------- 837 (889)
Q Consensus 781 ~~~~~~-~-~~~~~A~~~l~~al~l~p-~~~~~~~~la~~~~~~g~~~eA~~~l~ka------l~~-------------- 837 (889)
++.. + -+--.|+... +-.++| .++..+..-+..+....+|++|...+-.+ +.+
T Consensus 1054 --ALelAF~tqQf~aL~lI--a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1054 --ALELAFRTQQFSALDLI--AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred --HHHHHHhhcccHHHHHH--HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 0000 0 0001111111 123444 34556666677777888888887765443 311
Q ss_pred --------CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 838 --------KADL----HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 838 --------~p~~----~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
.|+. +++...+.+..++|.|..|-+-|.+|
T Consensus 1130 ~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1130 LMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 1111 34446778888889999888888766
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.78 E-value=8.8e-08 Score=105.71 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
+...|......|++++|+..+ .++++.+|.++.+++.+|.++..+|++++|+..+++++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~------------------~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLY------------------TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344567888999999997777 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc
Q 002716 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 684 (889)
Q Consensus 635 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~ 684 (889)
|+++.+++.+|.+++..|++++|+..|++++.++|++ .+...++.+....
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 7777776664443
No 145
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=9.4e-06 Score=91.73 Aligned_cols=287 Identities=13% Similarity=0.036 Sum_probs=145.8
Q ss_pred HHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAA 531 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A 531 (889)
..+.+.. ++|...|.+.-. |-.+-.+|...|.|++|.+..+.--.+. -...++..+..+...+|.+.|
T Consensus 810 AieLgMl---EeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH-Lr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 810 AIELGML---EEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH-LRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHhhH---HHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee-hhhhHHHHHHHHHhhccHHHH
Confidence 3444444 666666555432 2344556666777777766544311110 334556666666666666666
Q ss_pred HHHHHHH----------HHhCCCCcchhhh----HHHHHHHHHHHHHhhchhHHHHHHHhhhhccccccc----chHHHH
Q 002716 532 LCDVQAI----------LTLSPDYRMFEGR----VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI----GSLSVI 593 (889)
Q Consensus 532 ~~~~~~a----------l~~~p~~~~~~~~----~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~----~sl~~~ 593 (889)
+++|+++ |..+|.....+.+ -..|..-|......|+.+.|+.++.....|-+.--+ |....
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k- 956 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK- 956 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH-
Confidence 6666654 3334433211110 023444455566666666666666443332111100 00100
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CC--cHHHHHH------------HHHHHHhcC-
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------AS--DHERLVY------------EGWILYDTS- 652 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------p~--~~~~~~~------------lg~~~~~~g- 652 (889)
-..+....++..+.+.+|..|...|+..+|+..|.+|.... .. ..+-+.+ -+..|...|
T Consensus 957 Aa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~ 1036 (1416)
T KOG3617|consen 957 AARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG 1036 (1416)
T ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch
Confidence 12234456677788889999999999999998887764332 11 1112222 222333333
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChH
Q 002716 653 HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLD 729 (889)
Q Consensus 653 ~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~ 729 (889)
+...|...|.+|=-+ ..|.-++-.. +--.|++...+.+.+ +..+..-+..+....+|+
T Consensus 1037 ~~~~AVmLYHkAGm~--------~kALelAF~t-----------qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMI--------GKALELAFRT-----------QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred hhhHHHHHHHhhcch--------HHHHHHHHhh-----------cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 455555555443211 0110000000 111222222222222 445555666666667777
Q ss_pred HHHHHH------HHHHcc----------------Cc------c-----hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 730 LAADCY------SNALKI----------------RH------T-----RAHQGLARVHFLKNNKTTAYEEMTKL 770 (889)
Q Consensus 730 ~A~~~~------~~al~~----------------~p------~-----~a~~~La~~~~~~g~~~~A~~~~~~a 770 (889)
+|...+ +.|+.+ .| + ..+..+|.+..++|.|..|-+-|+++
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 776543 333322 11 1 67788999999999999999888877
No 146
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.73 E-value=5.2e-06 Score=85.93 Aligned_cols=238 Identities=13% Similarity=0.052 Sum_probs=164.4
Q ss_pred HHhhhHHHhcccHHHHHHHHHHHHHc-Ccc----hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCCh
Q 002716 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHI----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (889)
Q Consensus 387 ~~lG~~~~~~g~~~eA~~~~~~al~~-~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (889)
.+-|.-.+...++++|+....+.++- +.. ....-++.+...+|.+..++...-
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~---------------------- 67 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAV---------------------- 67 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHH----------------------
Confidence 34566777888999999888887752 111 111113333444444443332222
Q ss_pred hHHHHHHHHhhhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhcccHHHHHH
Q 002716 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKL------ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~--~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p------~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
...+-+++.+.. ...+|..++..+....++.+++.+-.-.++... .......+|..+..++.++++++
T Consensus 68 ----sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le 143 (518)
T KOG1941|consen 68 ----SQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE 143 (518)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH
Confidence 222222222111 135788888999888999999998888776643 22455668999999999999999
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC------C----CC
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------A----PK 603 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~------p----~~ 603 (889)
.|+++++...++.+...+......||.++.+.+++++|.-+. .++.++. . ..
T Consensus 144 sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~------------------~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 144 SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFP------------------CKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhh------------------HhHHHHHHhcCcCchhHHHH
Confidence 999999986665555555567888999999999999996665 4444332 1 12
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
..+.+.++..+..+|..-.|.++.+++.++.- -...-..-+|.+|...|+.+.|...|++|....
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 34567889999999999999999998876532 233456678999999999999999999988543
No 147
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.72 E-value=5.4e-08 Score=79.87 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g-~~~eA~~~~~~al~~~p 669 (889)
++..|..+|.++...|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57789999999999999999999999999999999999999999999999 79999999999999987
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.70 E-value=6.5e-07 Score=102.85 Aligned_cols=143 Identities=12% Similarity=0.027 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH----HHHHHHhhhhccccc
Q 002716 513 ECLELRFCFFLALE---DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI----ADCWLQLYDRWSSVD 585 (889)
Q Consensus 513 ~~l~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~----A~~~~~l~~~~~~~d 585 (889)
-.++++|.-+...+ ++..|+..|+++++++|++. .++..++.++.....+.. .....
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a---------- 403 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAAL---------- 403 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHH----------
Confidence 34456677766554 47889999999999999998 666666666655433321 00011
Q ss_pred ccchHHHHHHHHh--cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 586 DIGSLSVIYQMLE--SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 586 d~~sl~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
.....+++. .+|..+.++..+|..+...|++++|...+++++.++|+ ..++..+|.++...|++++|++.|++
T Consensus 404 ----~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 404 ----STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ----HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222355555 37778889999999999999999999999999999995 88999999999999999999999999
Q ss_pred HHhcCCChHHHHH
Q 002716 664 SIQMKRSFEAFFL 676 (889)
Q Consensus 664 al~~~p~~~a~~~ 676 (889)
|+.++|.++.++.
T Consensus 479 A~~L~P~~pt~~~ 491 (517)
T PRK10153 479 AFNLRPGENTLYW 491 (517)
T ss_pred HHhcCCCCchHHH
Confidence 9999999854443
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.65 E-value=1.2e-06 Score=93.72 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--C----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAA--S----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 679 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~----~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~ 679 (889)
.+..-|..|...|++++|...|.++.+..- + -...+...+.++.+. ++++|+..|++++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~------------- 102 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE------------- 102 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH-------------
Confidence 345677888888999999999888765421 1 123344455555444 78888888877763
Q ss_pred HHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHc-CChHHHHHHHHHHHccCcc--------hHHHHH
Q 002716 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGL 750 (889)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~-g~~~~A~~~~~~al~~~p~--------~a~~~L 750 (889)
++...| ....| +..+.++|.+|... |++++|+++|++|++.... ..+..+
T Consensus 103 ~y~~~G-----------~~~~a----------A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 103 IYREAG-----------RFSQA----------AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHCT------------HHHH----------HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhcC-----------cHHHH----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 233334 22222 35788999999998 9999999999999987432 677789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
|.++...|+|++|++.|+++.....++..... .....+...+.+++..|+...|...
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-----------------------~~~~~~l~a~l~~L~~~D~v~A~~~ 218 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-----------------------SAKEYFLKAILCHLAMGDYVAARKA 218 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-----------------------HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccch-----------------------hHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999888888764321110000 0012344556688889999999999
Q ss_pred HHHHHhcCCCH------HHHHHHHHHHHH--cCCHHHHHHHHHHHHccCCCCHHHHHHHHhhhc
Q 002716 831 LSRAIAFKADL------HLLHLRAAFHEH--TGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 886 (889)
Q Consensus 831 l~kal~~~p~~------~~l~l~a~~~~~--~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~~ 886 (889)
+++.....|.. ..+..+-..+.. ...+++|+..|.+.-++| +|...++.++++
T Consensus 219 ~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld---~w~~~~l~~~k~ 279 (282)
T PF14938_consen 219 LERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD---NWKTKMLLKIKK 279 (282)
T ss_dssp HHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS------HHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH---HHHHHHHHHHHh
Confidence 99999888752 222222233333 256777888877766665 477777776653
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.64 E-value=6e-07 Score=82.30 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCH
Q 002716 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKE 824 (889)
Q Consensus 745 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~ 824 (889)
..++.+|..+...|++++|++.+.+++...|++ |....+++.+|.++.+.|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~~~~~~~~ 55 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS---------------------------TYAPNAHYWLGEAYYAQGKY 55 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------------------------cccHHHHHHHHHHHHhhccH
Confidence 356778888888888866666666665554421 12256788899999999999
Q ss_pred HHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHh
Q 002716 825 NEAIAELSRAIAFKADL----HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 883 (889)
Q Consensus 825 ~eA~~~l~kal~~~p~~----~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~ 883 (889)
++|+..+++++...|+. ..+...+.++..+|++++|+..++++++..|+++.+.+...|
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 99999999999988873 456688888899999999999999999999999887766544
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.64 E-value=1e-06 Score=86.97 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
..+++.+|..+...|++++|+..|++++...|+ ...+..+|.++...|++++|+..+++++...|++. .+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~ 108 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP------SA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH------HH
Confidence 334444455555555555555555554443331 23444444444444444444444444444444444 34
Q ss_pred HHHHHHHHHHhhchhHH
Q 002716 555 SQLHMLVREHIDNWTIA 571 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A 571 (889)
+..+|.++...|+...+
T Consensus 109 ~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHHHHHcCChHhH
Confidence 44444444444443333
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.64 E-value=5.9e-07 Score=82.40 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 637 (889)
+++.+|.++...|++++|...++++++..|++
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 34444444444444444444444444444443
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.64 E-value=5.4e-07 Score=88.59 Aligned_cols=82 Identities=12% Similarity=0.031 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAY 679 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~ 679 (889)
...++.+|.++...|++++|+..|++++...|+ .+.++.++|.++...|++++|+..+++++.++|.. ..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 567789999999999999999999999988765 34589999999999999999999999999999988 77777777
Q ss_pred HHHHcC
Q 002716 680 ALADSS 685 (889)
Q Consensus 680 ~~~~~~ 685 (889)
++...+
T Consensus 115 i~~~~~ 120 (168)
T CHL00033 115 ICHYRG 120 (168)
T ss_pred HHHHhh
Confidence 665554
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.63 E-value=3.7e-07 Score=78.92 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
+++.+|.++...|++++|..++ +++++..|.+..++..+|.++...|++++|+..++++++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYY------------------EKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHH------------------HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677889999999999997777 9999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 634 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
.|.+...+..+|.++...|++++|...+.++++..|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999987764
No 155
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=2.5e-06 Score=82.36 Aligned_cols=194 Identities=11% Similarity=-0.026 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
..++-.|..|-..|-+.-|..-| .+++.+.|..+.++..+|..+...|+++.|.+.|+..++
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~Df------------------tQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDF------------------SQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhh------------------hhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 45666778888888888885445 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchh
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~ 712 (889)
++|.+.-+..+.|..++.-|++.-|.+.+.+-.+.+|+++.....-++ ..+..++....+. ..+++.+.-+..+.-.
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-~E~k~dP~~A~tn--L~qR~~~~d~e~WG~~ 204 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-NEQKLDPKQAKTN--LKQRAEKSDKEQWGWN 204 (297)
T ss_pred cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH-HHhhCCHHHHHHH--HHHHHHhccHhhhhHH
Confidence 999999999999999999999999999999999999998322222222 2223222211111 2222222222211111
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~ 775 (889)
.+-+.| |+..+ ...++++..-..+ +++..||..+...|+.++|...|+-++..+-
T Consensus 205 iV~~yL-------gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 205 IVEFYL-------GKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHH-------hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 112222 33221 1122332222211 7888999999999999999999988876544
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=98.61 E-value=2e-06 Score=93.67 Aligned_cols=140 Identities=11% Similarity=-0.012 Sum_probs=113.2
Q ss_pred HHHHHHHHHhcc---cHHHHHHHHHHHH---HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccc--cc
Q 002716 515 LELRFCFFLALE---DYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV--DD 586 (889)
Q Consensus 515 l~~~a~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~--dd 586 (889)
++++|...+..+ ..+.|+..|.+++ .++|+.. .++..++.++...-. ..|+.. +-
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a------~a~~~lA~~h~~~~~-----------~g~~~~~~~~ 320 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT------ECYCLLAECHMSLAL-----------HGKSELELAA 320 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH------HHHHHHHHHHHHHHH-----------hcCCCchHHH
Confidence 466676665444 5677888899999 8888888 677777777655311 011110 01
Q ss_pred cchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002716 587 IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (889)
Q Consensus 587 ~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 666 (889)
..++....++++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+++..|++..-.|+.++|++.++++++
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 12245559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCh
Q 002716 667 MKRSF 671 (889)
Q Consensus 667 ~~p~~ 671 (889)
++|.-
T Consensus 401 LsP~~ 405 (458)
T PRK11906 401 LEPRR 405 (458)
T ss_pred cCchh
Confidence 99987
No 157
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.001 Score=72.03 Aligned_cols=381 Identities=13% Similarity=0.087 Sum_probs=237.9
Q ss_pred hhHHHHHHHHHhcc--CHHHHHHHHHHHHcCCC----CHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCCcch-hhh
Q 002716 480 YPYMYRASSLMTKQ--NVEAALAEINRILGFKL----ALECLELRFCF-FLALEDYQAALCDVQAILTLSPDYRMF-EGR 551 (889)
Q Consensus 480 ~a~~~la~~~~~~g--~~~~Al~~l~kal~~~p----~~~~l~~~a~~-~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~ 551 (889)
.++..+|..+...| +..++++.++......| ...+...+|.+ +....+.+.|...++++..+...-+.+ ..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 35677888888888 89999999999999988 34445555554 566889999999999998776544444 445
Q ss_pred HHHHHHHHHHHHHhh-chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh----HHHHHHHHHHHHhCCHHHHHHH
Q 002716 552 VAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRS 626 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~-~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~ 626 (889)
.++..+|+.+|.+.. .+..|...+ .++++.....+ ...+.++.++.-..++..|++.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalL------------------rkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALL------------------RKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHH------------------HHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 578889999999888 667775555 88888876655 3557889999999999999988
Q ss_pred HHHHHHcCCCcH----HHHHH--HHHHHHhcCCHH---HHHHHHHHHHhcC---CCh-----HHHHHHHHHHHHcCCCCC
Q 002716 627 LQLARQHAASDH----ERLVY--EGWILYDTSHCE---EGLRKAEESIQMK---RSF-----EAFFLKAYALADSSQDSS 689 (889)
Q Consensus 627 l~~al~~~p~~~----~~~~~--lg~~~~~~g~~~---eA~~~~~~al~~~---p~~-----~a~~~la~~~~~~~~~~~ 689 (889)
+.--......-. .+.+. .+.++....+.. .+.....++.+.. |.. ..|..+-..+....-..+
T Consensus 150 Lavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~r 229 (629)
T KOG2300|consen 150 LAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVR 229 (629)
T ss_pred HhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchh
Confidence 543222211111 12222 233444444433 4444444444332 222 223333334433332333
Q ss_pred cchhhhhhHHHHhcchhhh---------Cch------------hHHHHHHHHHH--HHcCChHHHHHHHHHHHccCcc--
Q 002716 690 CSSTVVSLLEDALKCPSDR---------LRK------------GQALNNLGSVY--VDCGQLDLAADCYSNALKIRHT-- 744 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~---------~~~------------~~~~~~Lg~~y--~~~g~~~~A~~~~~~al~~~p~-- 744 (889)
......+++++.+...... ..+ ..++..+-.+- .-.|-+++|.++-++++.....
T Consensus 230 t~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk 309 (629)
T KOG2300|consen 230 TVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK 309 (629)
T ss_pred hhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555544431 000 11111111111 2346677788777777654211
Q ss_pred --------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---c-------CHHHHHHHHhc----CCHHHHHHH
Q 002716 745 --------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---N-------NASAYEKRSEY----CDRELTRAD 796 (889)
Q Consensus 745 --------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~---~-------~~~~~~~~~~~----~~~~~A~~~ 796 (889)
..+..++.+-.-.|++.+|++....+.+... . .+.+...+|.| +.++.|...
T Consensus 310 q~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~h 389 (629)
T KOG2300|consen 310 QADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFH 389 (629)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHH
Confidence 3455577778889999999998887766543 1 23445566666 688999999
Q ss_pred HHHHHhcCCC-C--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 797 LEMVTQLDPL-R--VYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD--------LHLLHLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 797 l~~al~l~p~-~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~--------~~~l~l~a~~~~~~g~~~~A~~~~~ 865 (889)
|..|.++... + +....++|.+|...|+-+.-.+.++..-..+.. ...++..|.+...++++.||....+
T Consensus 390 f~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 390 FIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLR 469 (629)
T ss_pred HHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999887433 2 345567899999988766555554443222111 1344466777777799999999999
Q ss_pred HHHccCCCCHHHHH
Q 002716 866 AALSVDPNDQEMLE 879 (889)
Q Consensus 866 ~al~l~P~~~~~l~ 879 (889)
+.|+.. +..+...
T Consensus 470 e~Lkma-naed~~r 482 (629)
T KOG2300|consen 470 ETLKMA-NAEDLNR 482 (629)
T ss_pred HHHhhc-chhhHHH
Confidence 999987 5444443
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.61 E-value=6.2e-07 Score=88.47 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
.+.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++ .++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34667788999999999999999999999999887653 5689999999999999999999999999999988 7777
Q ss_pred HHHHHHHHcC
Q 002716 676 LKAYALADSS 685 (889)
Q Consensus 676 ~la~~~~~~~ 685 (889)
.+|.++...+
T Consensus 111 ~lg~~~~~~g 120 (172)
T PRK02603 111 NIAVIYHKRG 120 (172)
T ss_pred HHHHHHHHcC
Confidence 8888777766
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.60 E-value=1.8e-06 Score=92.41 Aligned_cols=138 Identities=13% Similarity=0.012 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHH
Q 002716 513 ECLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (889)
Q Consensus 513 ~~l~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~ 591 (889)
.++..+|.+|... |++++|+..|++++...............+..++.++...|+|++|.+.+
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~---------------- 178 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY---------------- 178 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH----------------
Confidence 3455568999888 99999999999999875444444444467778899999999999997777
Q ss_pred HHHHHHhcCCC----C---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH-----HHHHHHHHHHH--hcCCHHHH
Q 002716 592 VIYQMLESDAP----K---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----ERLVYEGWILY--DTSHCEEG 657 (889)
Q Consensus 592 ~~~~al~~~p~----~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~lg~~~~--~~g~~~eA 657 (889)
++.....-. . ...++..+.+++..|++..|.+.+++....+|... .....+-..+- ....+.+|
T Consensus 179 --e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 179 --EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp --HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred --HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666553211 1 13456788899999999999999999998887532 22223333332 23457777
Q ss_pred HHHHHHHHhcC
Q 002716 658 LRKAEESIQMK 668 (889)
Q Consensus 658 ~~~~~~al~~~ 668 (889)
+..|...-+++
T Consensus 257 v~~~d~~~~ld 267 (282)
T PF14938_consen 257 VAEYDSISRLD 267 (282)
T ss_dssp CHHHTTSS---
T ss_pred HHHHcccCccH
Confidence 77777655444
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.60 E-value=1.4e-07 Score=77.39 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q 002716 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (889)
Q Consensus 478 ~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p 543 (889)
++..|..+|.+++..|++++|+..|++++..+| +..++..+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567889999999999999999999999999999 8999999999999999 89999999999999988
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=98.59 E-value=2.6e-06 Score=92.84 Aligned_cols=159 Identities=13% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHHHHHHhcc---CHHHHHHHHHHHH---cCCC-CHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhCCCC
Q 002716 482 YMYRASSLMTKQ---NVEAALAEINRIL---GFKL-ALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 482 ~~~la~~~~~~g---~~~~Al~~l~kal---~~~p-~~~~l~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~ 545 (889)
++.+|...+..+ ..+.|+..|.+++ .++| ...++-.++++++.. .+..+|.+..+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 366777665544 4567888999999 8888 788888888887654 35678889999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHH
Q 002716 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (889)
Q Consensus 546 ~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 625 (889)
+ .++..+|.+....++++.|..+| ++++.++|+.+.+++..|.+....|+.++|.+
T Consensus 338 a------~a~~~~g~~~~~~~~~~~a~~~f------------------~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 338 G------KILAIMGLITGLSGQAKVSHILF------------------EQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred H------HHHHHHHHHHHhhcchhhHHHHH------------------HHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9 89999999999999999997777 99999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 002716 626 SLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES 664 (889)
Q Consensus 626 ~l~~al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~a 664 (889)
.++++++++|....+-...-++ .|...-.++|+..|-+-
T Consensus 394 ~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (458)
T PRK11906 394 CIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence 9999999999877766666666 56677788888887653
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-06 Score=89.99 Aligned_cols=120 Identities=10% Similarity=-0.004 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~ 607 (889)
.+.-+.-++.-+..+|++. +.|..||.+|...|+++.|...| .+++++.|+++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~------egW~~Lg~~ym~~~~~~~A~~AY------------------~~A~rL~g~n~~~~ 193 (287)
T COG4235 138 MEALIARLETHLQQNPGDA------EGWDLLGRAYMALGRASDALLAY------------------RNALRLAGDNPEIL 193 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcchhHHHHHH------------------HHHHHhCCCCHHHH
Confidence 4445566777888899999 89999999999999999995555 99999999999999
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 608 FRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 608 ~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+|.++..+.+ ..++...+++++..+|.+..+++.+|..++++|++.+|+..++..++..|.+
T Consensus 194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 194 LGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999988877553 4678889999999999999999999999999999999999999999988776
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7.9e-07 Score=91.41 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=107.8
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc---cHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALE---DYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g---~~~~A~~~~~~ 537 (889)
+.-+.-++..+..||+++..|..+|.+|+..|++..|...|.+++++.| +++.+...|.++..+. ...++...+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 5667778889999999999999999999999999999999999999999 9999999998876554 46789999999
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChH
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~ 605 (889)
++..||++. .+..+||..+...|+|.+|...+ +.++...|.+..
T Consensus 219 al~~D~~~i------ral~lLA~~afe~g~~~~A~~~W------------------q~lL~~lp~~~~ 262 (287)
T COG4235 219 ALALDPANI------RALSLLAFAAFEQGDYAEAAAAW------------------QMLLDLLPADDP 262 (287)
T ss_pred HHhcCCccH------HHHHHHHHHHHHcccHHHHHHHH------------------HHHHhcCCCCCc
Confidence 999999999 99999999999999999995555 899988876643
No 164
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=6.6e-07 Score=77.35 Aligned_cols=97 Identities=22% Similarity=0.161 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+..+|.++...|++++|+..++++++..|.+. .++..+|.++...+++++|..++ +
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~------------------~ 58 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDY------------------E 58 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHH------------------H
Confidence 44556666666666666666666666666655 45566666666666666665555 6
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
+++...|.+..++..+|.++...|+++.|...+.++++..|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 59 KALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 66666666666666666666666666666666666665554
No 165
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.56 E-value=2.4e-06 Score=81.59 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=90.5
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
..++...+...+++++..+|+.+... .+...++.++...|++++|...| ++++...|+.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~---~A~l~lA~~~~~~g~~~~A~~~l------------------~~~~~~~~d~ 81 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAA---LAALQLAKAAYEQGDYDEAKAAL------------------EKALANAPDP 81 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHH---HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHhhCCCH
Confidence 57778888778888888888774221 36667788888888888886666 7777766544
Q ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 604 ---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 604 ---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
..+.+++|.++...|++++|+..++. +...+-.+.++..+|.++...|++++|+..|++++
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 45677888888999999999988866 33344556777888999999999999999888874
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.54 E-value=3.1e-06 Score=80.85 Aligned_cols=121 Identities=15% Similarity=0.066 Sum_probs=77.0
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~ 689 (889)
.....++...+...++...+..|+. ..+.+.+|.+++..|++++|...|+.++...|+....
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~--------------- 84 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK--------------- 84 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH---------------
Confidence 3346788888888889888888887 4567788999999999999999999998766554100
Q ss_pred cchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
..+...|+.++...|++++|+..++..-..... .++..+|.++...|++++|...|+
T Consensus 85 ----------------------~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 85 ----------------------PLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 023444555555555555555555442111111 444445555555555555555555
Q ss_pred HH
Q 002716 769 KL 770 (889)
Q Consensus 769 ~a 770 (889)
++
T Consensus 143 ~A 144 (145)
T PF09976_consen 143 KA 144 (145)
T ss_pred Hh
Confidence 54
No 167
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=0.00034 Score=78.48 Aligned_cols=242 Identities=13% Similarity=0.058 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhc
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
..-+...|-.-|.+|-.-.++++|.++|++.-..+. ...+||..+- .+++..-..-|.-....+.+
T Consensus 657 alik~elydkagdlfeki~d~dkale~fkkgdaf~k---aielarfafp-----------~evv~lee~wg~hl~~~~q~ 722 (1636)
T KOG3616|consen 657 ALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGK---AIELARFAFP-----------EEVVKLEEAWGDHLEQIGQL 722 (1636)
T ss_pred HHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHH---HHHHHHhhCc-----------HHHhhHHHHHhHHHHHHHhH
Confidence 344455666778888888888888888876422111 1123322110 01111111123334445556
Q ss_pred CChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 459 ~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+.|+..|-+|--+ ..--......++|.+|+..++.+-..+.....+-..+.-|...|+|+.|.+.|.++
T Consensus 723 ---daainhfiea~~~--------~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 723 ---DAAINHFIEANCL--------IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred ---HHHHHHHHHhhhH--------HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 6666666554221 11123445677888999888876655555666777788888999999998888765
Q ss_pred HHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Q 002716 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (889)
Q Consensus 539 l~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g 618 (889)
=. ......+|.+.|+|.+|.++...+- ...+..+ ..+.++-.++..- -+..--.+|...|
T Consensus 792 ~~--------------~~dai~my~k~~kw~da~kla~e~~---~~e~t~~-~yiakaedldehg--kf~eaeqlyiti~ 851 (1636)
T KOG3616|consen 792 DL--------------FKDAIDMYGKAGKWEDAFKLAEECH---GPEATIS-LYIAKAEDLDEHG--KFAEAEQLYITIG 851 (1636)
T ss_pred ch--------------hHHHHHHHhccccHHHHHHHHHHhc---CchhHHH-HHHHhHHhHHhhc--chhhhhheeEEcc
Confidence 21 1111266777888888855441111 1111110 0111111111100 0111122344455
Q ss_pred CHHHHHHHHHHH----------HHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 619 CPEAAMRSLQLA----------RQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 619 ~~~~A~~~l~~a----------l~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
.++.|+..|.+. -+..|+ -.+.+..+|.-+...|+...|...|-++-
T Consensus 852 ~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 852 EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 556666665542 122332 34567788888999999999998887764
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.53 E-value=0.002 Score=74.90 Aligned_cols=406 Identities=13% Similarity=0.029 Sum_probs=221.8
Q ss_pred HhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHH
Q 002716 455 RSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALC 533 (889)
Q Consensus 455 ~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~ 533 (889)
.+.+ ++|+....+.++..|+...+....|..+.++|+.++|...++..-...+ +...+..+-.+|..+|.+++|..
T Consensus 22 ~~qf---kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQF---KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHH---HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3455 7888888888888888888888888888888888888876666555555 66677777888888888888888
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH----HHHHHHhh-----hhcccc----------cccc------
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI----ADCWLQLY-----DRWSSV----------DDIG------ 588 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~----A~~~~~l~-----~~~~~~----------dd~~------ 588 (889)
.|++++..+|+ . +.+..+-.+|.+.+.|.+ |++.++.+ --|+-. +...
T Consensus 99 ~Ye~~~~~~P~-e------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 99 LYERANQKYPS-E------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHhhCCc-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 88888888888 3 344444455555554443 44444322 123110 0000
Q ss_pred -hHHHHHHHHhcC-CCChHH-HHHHHHHHHHhCCHHHHHHHHHH--HHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 589 -SLSVIYQMLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSLQL--ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 589 -sl~~~~~al~~~-p~~~~~-~~~la~~~~~~g~~~~A~~~l~~--al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
+-...++.++.. +-...+ ....-.++..+|++++|...+.. +-...+.+.......+..+...+++.+-.+...+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 112333444443 211111 11223456678999999998832 3334444555555666777888999999999999
Q ss_pred HHhcCCCh-HHHHH-HHHHHHHcCCCCCcc-hhhhhhHHHHhcchhhh-----CchhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 664 SIQMKRSF-EAFFL-KAYALADSSQDSSCS-STVVSLLEDALKCPSDR-----LRKGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 664 al~~~p~~-~a~~~-la~~~~~~~~~~~~~-~~~~~~~~~Al~~~~~~-----~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
++..++++ ..+.. .-.++......+... ......++...+...+. ..+-.++..+-.-+..-|+.+++...|
T Consensus 252 Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 252 LLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred HHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 99888885 22222 122222221111110 01111222222222221 222233444444445667888777666
Q ss_pred HHHHccCcc--------------------------------------hHHHHHHHHHHHcCCH-----HHHHHHHHHHHH
Q 002716 736 SNALKIRHT--------------------------------------RAHQGLARVHFLKNNK-----TTAYEEMTKLIK 772 (889)
Q Consensus 736 ~~al~~~p~--------------------------------------~a~~~La~~~~~~g~~-----~~A~~~~~~al~ 772 (889)
-+-+...|. ..+...-.+....|.+ +.-...++++..
T Consensus 332 ~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~ 411 (932)
T KOG2053|consen 332 FKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKL 411 (932)
T ss_pred HHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 543333222 0011111122222321 111222222221
Q ss_pred Hhc--------------cCHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHH
Q 002716 773 KAR--------------NNASAYEKRS------------EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENE 826 (889)
Q Consensus 773 ~~~--------------~~~~~~~~~~------------~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~e 826 (889)
... ..+..+..++ ..+..-+|+-.++..+..+|.+...-..+-.+|.-.|-+..
T Consensus 412 ~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~ 491 (932)
T KOG2053|consen 412 TYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPD 491 (932)
T ss_pred HHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChh
Confidence 111 1111111111 01355678888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 827 AIAELSRAIAFKA-D-LHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 827 A~~~l~kal~~~p-~-~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
|.+.|+.. .++. . +..-++.-..+...|++..|...+...+...
T Consensus 492 a~~~y~tL-dIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 492 AYELYKTL-DIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHHHHHhc-chHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 88887643 2221 1 1222344444555577777777777777654
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.53 E-value=1.6e-06 Score=85.18 Aligned_cols=102 Identities=15% Similarity=-0.021 Sum_probs=51.2
Q ss_pred cCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh
Q 002716 493 QNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (889)
Q Consensus 493 g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~ 569 (889)
+.|..+...+...++..+ ...++...|.++..+|++++|+..|++++.+.|+.. ....++..+|.++...|+++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHH
Confidence 334555555555444433 344555556666666666666666666655544322 00124455555555555555
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002716 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (889)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~ 615 (889)
+|+..+ ++++..+|.....+..+|.++.
T Consensus 90 eA~~~~------------------~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 90 KALEYY------------------FQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHH------------------HHHHHhCcCcHHHHHHHHHHHH
Confidence 554444 5555555555555555555544
No 170
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.53 E-value=0.00067 Score=71.49 Aligned_cols=221 Identities=17% Similarity=0.016 Sum_probs=154.1
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHcCCCCCcc
Q 002716 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCS 691 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~p~~~a~~~la~~~~~~~~~~~~~ 691 (889)
.+.|..+.|.++-+.+....|.-+.+....-......|+++.|++..+..... .++. +-...+.++
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~-aeR~rAvLL---------- 233 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV-AERSRAVLL---------- 233 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh-HHHHHHHHH----------
Confidence 45677777888888887777877777666666667778888888777655421 1111 111111111
Q ss_pred hhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 692 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 769 (889)
Q Consensus 692 ~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~ 769 (889)
..-+.. .-..+...|...-.+++++.|+ .+-..-++.++..|+..++-..++.
T Consensus 234 ------------------------tAkA~s-~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 234 ------------------------TAKAMS-LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred ------------------------HHHHHH-HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHH
Confidence 111111 1234567788888888888888 6666778888999999999999998
Q ss_pred HHHHhc-cCHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 002716 770 LIKKAR-NNASAYEKRSEYCDRELT-RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLR 847 (889)
Q Consensus 770 al~~~~-~~~~~~~~~~~~~~~~~A-~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~ 847 (889)
+.+..| +..+..+.+..-|+.... .+-..+...+.|++.+.....+..-...|++..|...-+.+....|....+.++
T Consensus 289 aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLl 368 (531)
T COG3898 289 AWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLL 368 (531)
T ss_pred HHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHH
Confidence 888877 222333333333432221 223344456789999999999999999999999999999999999998888888
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHccC
Q 002716 848 AAFHEHT-GDVLGALRDCRAALSVD 871 (889)
Q Consensus 848 a~~~~~~-g~~~~A~~~~~~al~l~ 871 (889)
+.+-... ||-.++..++-++++--
T Consensus 369 AdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 369 ADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHhhccCchHHHHHHHHHHhcCC
Confidence 8887766 99999999999999863
No 171
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.5e-06 Score=92.31 Aligned_cols=97 Identities=15% Similarity=0.009 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
.++.+++.++.+++.|.+|+++. .++|+.+|+|..++|+.|.++..+|+++.|+..|+++++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c------------------~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESC------------------NKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHH------------------HHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 46778889999999999998888 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQM 667 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA-~~~~~~al~~ 667 (889)
..|+|..+...+..+..+...+.+. .+.|..++..
T Consensus 320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999988888888877766655544 6677777654
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.53 E-value=3.1e-07 Score=74.30 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+.+|..+...|++++|+..|+++++..|+++++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999999999999999999999999999999999975
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.51 E-value=3.8e-07 Score=73.76 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=58.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 483 MYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 483 ~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
+.+|..++..|++++|+..|++++...| +.++++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4678999999999999999999999999 999999999999999999999999999999999874
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.51 E-value=0.0003 Score=74.06 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=194.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFF--LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
+..-+..-+-.|+++.|.+-|+.++. +|....+-++|.+. ...|+.+.|+.+-+.+-...|... -+....-
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~------WA~~AtL 195 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP------WAARATL 195 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc------hHHHHHH
Confidence 33446777889999999999998875 56555555665544 467999999999999999999988 4544455
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK-----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
......|+|+.|+++.... .....+.++- ..++...+... -.-+...|...-.++.++.
T Consensus 196 e~r~~~gdWd~AlkLvd~~---------------~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~ 259 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQ---------------RAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLA 259 (531)
T ss_pred HHHHhcCChHHHHHHHHHH---------------HHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC
Confidence 6677899999998877111 1111122211 11222222222 2346888999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHH
Q 002716 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 714 (889)
Q Consensus 635 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~ 714 (889)
|+...+-..-+..++..|+..++-..++.+.+..|.-+.+ +.++....| ++.+..++.+.+.-.-..+..+.
T Consensus 260 pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~g------dta~dRlkRa~~L~slk~nnaes 331 (531)
T COG3898 260 PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSG------DTALDRLKRAKKLESLKPNNAES 331 (531)
T ss_pred CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCC------CcHHHHHHHHHHHHhcCccchHH
Confidence 9999999999999999999999999999999998876422 223333444 45556666666655555566777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhc
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLK-NNKTTAYEEMTKLIKKAR 775 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~-g~~~~A~~~~~~al~~~~ 775 (889)
....+..-+..|++..|..--+.+....|. .++..++++-... |+-.+....+.+++..-.
T Consensus 332 ~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 332 SLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 888888899999999999999999999998 7788889887766 999999998888876543
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=0.00024 Score=72.34 Aligned_cols=222 Identities=23% Similarity=0.197 Sum_probs=132.7
Q ss_pred ccCHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCcchhhhHHHHHHHHHHHHHhh
Q 002716 492 KQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILT--LSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 492 ~g~~~~Al~~l~kal~~~p~---~~~l~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~a~~~lg~~~~~~~ 566 (889)
.+.+..+...+...+...+. .......+..+...+++..+...+...+. ..+... ..+...+..+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA------EALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH------HHHHHHHHHHHHHh
Confidence 35555566666666655553 45555666666666666666666666665 344444 45555666666666
Q ss_pred chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHcCC---CcHHHHH
Q 002716 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL-LLLRLNCPEAAMRSLQLARQHAA---SDHERLV 642 (889)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~ 642 (889)
++..+...+ .+++...+.........+. ++...|+++.|...+.+++...| .......
T Consensus 110 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (291)
T COG0457 110 KYEEALELL------------------EKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHH------------------HHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 666664444 6666655555444444444 66666777777777776666554 2344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y 722 (889)
..+..+...+++++|+..+.+++...+.. ....+..++..+
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~ 212 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKLNPDD---------------------------------------DAEALLNLGLLY 212 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhhCccc---------------------------------------chHHHHHhhHHH
Confidence 55555666666777776666666554442 013455666666
Q ss_pred HHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 002716 723 VDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 723 ~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
...+++++|...+..++...|. ..+..++..+...|.++++...+.+.+...|.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6666777777777777777765 45555555555555566666666666655553
No 176
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.4e-06 Score=90.88 Aligned_cols=128 Identities=22% Similarity=0.202 Sum_probs=80.6
Q ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHc-CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHH
Q 002716 386 FHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (889)
Q Consensus 386 ~~~lG~~~~~~g~~~eA~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A 464 (889)
...-|+.|+++|+|..|..-|++|+.. .+..+. +.+.. +++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~---------------------------~~~ 252 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQ---------------------------KKA 252 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHH---------------------------HHH
Confidence 456799999999999999999999863 111100 00000 000
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p 543 (889)
.. + ....+.++|.++.+++.|.+|+..++++|..+| |..+++.+|.++..+|+|+.|+.+|+++++++|
T Consensus 253 ~~-~---------k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 253 EA-L---------KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HH-H---------HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 00 0 012456677777777777777777777777777 777777777777777777777777777777777
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhc
Q 002716 544 DYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~~ 567 (889)
+|. .+...+..+..+...
T Consensus 323 ~Nk------a~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 323 SNK------AARAELIKLKQKIRE 340 (397)
T ss_pred CcH------HHHHHHHHHHHHHHH
Confidence 776 455555555444433
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.45 E-value=0.00011 Score=74.82 Aligned_cols=185 Identities=24% Similarity=0.222 Sum_probs=137.6
Q ss_pred hHHHHHHHHhhhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHHHHHc--CCC-CHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILG--FKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~--~~~a~~~la~~~~~~g~~~~Al~~l~kal~--~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
..+...+.......+. ....+...+..+...+.+..+...+...+. ..+ ....+...+..+...+++..++..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555566666666665 366677778888888888888888888876 444 66777777888888888888888888
Q ss_pred HHHHhCCCCcchhhhHHHHHHHHH-HHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC---CChHHHHHHHH
Q 002716 537 AILTLSPDYRMFEGRVAASQLHML-VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA---PKGVLYFRQSL 612 (889)
Q Consensus 537 ~al~~~p~~~~~~~~~~a~~~lg~-~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p---~~~~~~~~la~ 612 (889)
+++...+... ......+. ++...|+++.|...+ .+++..+| .........+.
T Consensus 120 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 175 (291)
T COG0457 120 KALALDPDPD------LAEALLALGALYELGDYEEALELY------------------EKALELDPELNELAEALLALGA 175 (291)
T ss_pred HHHcCCCCcc------hHHHHHHHHHHHHcCCHHHHHHHH------------------HHHHhcCCCccchHHHHHHhhh
Confidence 8888777664 34444445 788888888886666 77776665 34555666666
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
.+...++++.|+..+.+++...+. ....+..++..+...+++++|+..+..++...|.
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 677788888888888888888888 6788888888888888888888888888877666
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=4.8e-06 Score=95.74 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccC---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc--------ccHHHHHHHHHHHHHh--CCCCcc
Q 002716 482 YMYRASSLMTKQN---VEAALAEINRILGFKL-ALECLELRFCFFLAL--------EDYQAALCDVQAILTL--SPDYRM 547 (889)
Q Consensus 482 ~~~la~~~~~~g~---~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~ 547 (889)
++.+|.-++..+. ..+|+..|+++++.+| ...++..++.++... ++...+....++++.+ +|..+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~- 420 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP- 420 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh-
Confidence 3444555544333 5566666677777776 555555555554332 2344555566665554 55555
Q ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHH
Q 002716 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (889)
Q Consensus 548 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 627 (889)
.++..+|..+...|++++|...+ +++++++| +..+|..+|.++...|++++|+..|
T Consensus 421 -----~~~~ala~~~~~~g~~~~A~~~l------------------~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 421 -----RIYEILAVQALVKGKTDEAYQAI------------------NKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred -----HHHHHHHHHHHhcCCHHHHHHHH------------------HHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56777777777788888886666 88888888 4678888888888888888888888
Q ss_pred HHHHHcCCCcHH
Q 002716 628 QLARQHAASDHE 639 (889)
Q Consensus 628 ~~al~~~p~~~~ 639 (889)
++|+.++|.++.
T Consensus 477 ~~A~~L~P~~pt 488 (517)
T PRK10153 477 STAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCCCch
Confidence 888888888764
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.44 E-value=5e-07 Score=77.36 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=71.3
Q ss_pred hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002716 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 565 ~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
.|++++|+.++ +++++.+|. +...++.+|.+|.+.|++++|+..+++ .+.+|.+....+
T Consensus 2 ~~~y~~Ai~~~------------------~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYY------------------EKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHH------------------HHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHH
T ss_pred CccHHHHHHHH------------------HHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHH
Confidence 57899997777 999999995 566788899999999999999999999 888888889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~a 664 (889)
.+|.++..+|++++|++.++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
No 180
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.43 E-value=2.8e-07 Score=94.25 Aligned_cols=191 Identities=11% Similarity=0.068 Sum_probs=138.0
Q ss_pred cCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Q 002716 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFL 523 (889)
Q Consensus 445 ~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~ 523 (889)
.+..|.-|+.++.| ++|+.+|.+++..+|.++..+.++|..|++.++|..|...++.++.++. ...+|..+|..-.
T Consensus 100 iKE~GN~yFKQgKy---~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 100 IKERGNTYFKQGKY---EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE 176 (536)
T ss_pred HHHhhhhhhhccch---hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34578899999999 9999999999999999999999999999999999999999999999998 8889999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
.+|...+|.++++.+|++.|++. +....++ ......++ .-+.+..|+.
T Consensus 177 ~Lg~~~EAKkD~E~vL~LEP~~~------ELkK~~a----~i~Sl~E~----------------------~I~~KsT~G~ 224 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALEPKNI------ELKKSLA----RINSLRER----------------------KIATKSTPGF 224 (536)
T ss_pred HHhhHHHHHHhHHHHHhhCcccH------HHHHHHH----HhcchHhh----------------------hHHhhcCCCC
Confidence 99999999999999999999976 3322222 22222222 1111222221
Q ss_pred hHH---------HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 604 GVL---------YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 604 ~~~---------~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+ .-..|..+...|.++.++..+-+-+....++.....+ +..+....++++|+....+++..+|..
T Consensus 225 ~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~ 300 (536)
T KOG4648|consen 225 TPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTP 300 (536)
T ss_pred CccccchhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCc
Confidence 111 1123555666777777777766555444333322222 455666677888888777777777665
No 181
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.37 E-value=6.5e-05 Score=80.82 Aligned_cols=366 Identities=13% Similarity=0.072 Sum_probs=213.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCCCCcc--hhhhHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAI-LTLSPDYRM--FEGRVAASQL 557 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~~~~--~~~~~~a~~~ 557 (889)
..+.-..|....+..-+....+.+..... ++.++.+.+..++..|++.+|.+.+... +...|.-.. .......+++
T Consensus 209 ~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 209 QLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred hHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 34445556777778888888888877766 8889999999999999999999876543 223333111 1112235788
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh-------cC-----------CCChHHHHHHHHHHHHhCC
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-------SD-----------APKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~-------~~-----------p~~~~~~~~la~~~~~~g~ 619 (889)
+|.++++.+.|.-+..+| .++++ .. ...-.+.++.|..|+..|+
T Consensus 289 lGcIh~~~~~y~~~~~~F------------------~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr 350 (696)
T KOG2471|consen 289 LGCIHYQLGCYQASSVLF------------------LKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR 350 (696)
T ss_pred cceEeeehhhHHHHHHHH------------------HHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC
Confidence 999999999999998888 44442 11 1345688999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---CCH------------------------------------------
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHC------------------------------------------ 654 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~---g~~------------------------------------------ 654 (889)
+-.|.++|.+++...-.+|..|..++.+.... |-.
T Consensus 351 Pl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p 430 (696)
T KOG2471|consen 351 PLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLP 430 (696)
T ss_pred cHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCC
Confidence 99999999999999999999999998876531 111
Q ss_pred ----HHHHHHHHHHHhcCCCh---HHHHHHHHHHHHcCCCCCcc--hhhhhhH----HHHhcchhhhC------c--hhH
Q 002716 655 ----EEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCS--STVVSLL----EDALKCPSDRL------R--KGQ 713 (889)
Q Consensus 655 ----~eA~~~~~~al~~~p~~---~a~~~la~~~~~~~~~~~~~--~~~~~~~----~~Al~~~~~~~------~--~~~ 713 (889)
+-|.-+++.++-+-|+. ...+..|..-.+.|..++.. ++.-.-. +.-.......+ + +..
T Consensus 431 ~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~a 510 (696)
T KOG2471|consen 431 KLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQA 510 (696)
T ss_pred ccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHH
Confidence 11222222232222211 12222222211112111100 0000000 00000000000 0 034
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHF-----LKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 787 (889)
.+.+.+.+-...|+.-.|+..-++.++...- .++..||.+|. ...+..+|...+.--+--..+...-+. .
T Consensus 511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n-~--- 586 (696)
T KOG2471|consen 511 IFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYN-Q--- 586 (696)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccc-h---
Confidence 5667777888899999999999888876443 55555555553 444555554443321110000000000 0
Q ss_pred CCHHHHHH---HHHH----HHhcCCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH
Q 002716 788 CDRELTRA---DLEM----VTQLDPL-----RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKAD---LHLLHLRAAFHE 852 (889)
Q Consensus 788 ~~~~~A~~---~l~~----al~l~p~-----~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~---~~~l~l~a~~~~ 852 (889)
.|++.-.. .++- ..+..|. ..-.++++|.++.-+|.+++|...+..|..+-|. +....++-.+-.
T Consensus 587 ~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL 666 (696)
T KOG2471|consen 587 EDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDL 666 (696)
T ss_pred hhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHH
Confidence 01111000 0000 0011111 1235778999999999999999999999887763 234445555556
Q ss_pred HcCCHHHHHHHHHHHHc
Q 002716 853 HTGDVLGALRDCRAALS 869 (889)
Q Consensus 853 ~~g~~~~A~~~~~~al~ 869 (889)
++|+...|+..+++.--
T Consensus 667 ~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 667 MLGRSQDALARLKQCTH 683 (696)
T ss_pred hcCCCcchHHHHHhccc
Confidence 67999999998887543
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=1.2e-06 Score=74.92 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh
Q 002716 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (889)
Q Consensus 525 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~ 604 (889)
+|++++|+..+++++..+|.+. . ...++.+|.++.+.|++++|..++ ++ .+.+|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~--~~~~~~la~~~~~~~~y~~A~~~~------------------~~-~~~~~~~~ 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--N--SAYLYNLAQCYFQQGKYEEAIELL------------------QK-LKLDPSNP 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--H--HHHHHHHHHHHHHTTHHHHHHHHH------------------HC-HTHHHCHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--h--HHHHHHHHHHHHHCCCHHHHHHHH------------------HH-hCCCCCCH
Confidence 4667777777777777766431 0 034555677777777777775555 55 55566666
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
...+.+|.++..+|++++|+..|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 66666677777777777777776653
No 183
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.35 E-value=1.6e-06 Score=89.61 Aligned_cols=136 Identities=16% Similarity=0.198 Sum_probs=105.3
Q ss_pred eEEEehHHHHhhcChhhhhhhcCCCCCCCc----CceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHc
Q 002716 191 EKIECDRQKFAALSAPFSAMLNGSFMESLC----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFC 266 (889)
Q Consensus 191 ~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~----~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~~A~~~~ 266 (889)
.+.|||+.++ .|++||+.||.|+|.|+.. +...++ ..+..+.+.++.|+|+++-+ +.++...+++-+|+++.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ad~la 376 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVLLFADKLA 376 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHHHHhhHhh
Confidence 3499999999 6999999999999999652 233344 47788999999999999999 99999999999999994
Q ss_pred HH--H-HHHHHHHHHHhhcC--CHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHHHHhcc
Q 002716 267 CE--R-LKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSH 330 (889)
Q Consensus 267 ~~--~-l~~~~~~~l~~~~~--~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~~ll~~ 330 (889)
++ . ||..-...+++... ..-++..++.++-+-.+..|....-.+..+|+...+..+++.+.+..
T Consensus 377 l~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~ 445 (516)
T KOG0511|consen 377 LADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRT 445 (516)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 43 3 66655555544332 22347788888888888888888888888887777777777766544
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=98.35 E-value=9.7e-06 Score=76.42 Aligned_cols=104 Identities=10% Similarity=-0.074 Sum_probs=83.4
Q ss_pred HHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhccc
Q 002716 505 ILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS 583 (889)
Q Consensus 505 al~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~ 583 (889)
+.++.+ ..+..+..|.-++..|++++|...|+-+...+|.++ +-+..||.++...++|++|+..|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~------~Y~~GLaa~~Q~~k~y~~Ai~~Y-------- 94 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP------DYTMGLAAVCQLKKQFQKACDLY-------- 94 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH------HHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334444 566677778888888888888888888888888887 67778888888888888886666
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 584 VDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 584 ~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
..+..++++++...+..|.+++.+|+.+.|+..|+.++.
T Consensus 95 ----------~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 95 ----------AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ----------HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 777777888888888888888888888888888888887
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.34 E-value=8.3e-06 Score=85.33 Aligned_cols=107 Identities=8% Similarity=-0.076 Sum_probs=90.1
Q ss_pred hhhHHHHHHHH-HhccCHHHHHHHHHHHHcCCC-C---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHH
Q 002716 479 SYPYMYRASSL-MTKQNVEAALAEINRILGFKL-A---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (889)
Q Consensus 479 ~~a~~~la~~~-~~~g~~~~Al~~l~kal~~~p-~---~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 553 (889)
...++..|..+ +..|+|++|+..|++.+...| + +.+++.+|.+|+..|++++|+..|++++..+|+++... .
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~---d 218 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA---D 218 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh---H
Confidence 45667777765 667999999999999999998 3 57999999999999999999999999999999876332 5
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
+++.+|.++...|++++|...+ +++++..|+...+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~------------------~~vi~~yP~s~~a 253 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVY------------------QQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHCcCCHHH
Confidence 7888899999999999997777 8999999987654
No 186
>PRK15331 chaperone protein SicA; Provisional
Probab=98.34 E-value=5.8e-06 Score=77.89 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+..+..|.-.+..|++++|...| +-..-.+|.++..+..+|.++..+++|++|+..|..+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F------------------~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFF------------------RFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999998888 777778999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~ 681 (889)
.+++++...+..|.++...|+.+.|...|+.++. .|.+......+..+
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~ 147 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVY 147 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHH
Confidence 9999999999999999999999999999999997 45554333444433
No 187
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.33 E-value=5.8e-05 Score=76.20 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHH
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~ 779 (889)
-..+|..|.+.|.+..|+.-++.+++..|+ .++..+..+|...|-.++|.+.-.-+-...|+..|
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~ 239 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQW 239 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcc
Confidence 356789999999999999999999998777 78888999999999998887654433333344433
No 188
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.00014 Score=87.32 Aligned_cols=243 Identities=14% Similarity=0.057 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHH
Q 002716 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLE 699 (889)
Q Consensus 622 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~ 699 (889)
+....|++.+..+|+..-.|..+..-..+.++.++|.+.+++|+. +++.. +-..++-.+|.+..+.........+-++
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 344566777777788777777777777777888888888888875 33333 2222222222222222222222333333
Q ss_pred HHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-
Q 002716 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN- 776 (889)
Q Consensus 700 ~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~- 776 (889)
+|.++. .+..+|..|..+|...+++++|.++|+..++.... ..|..+|..++.+++-++|...+.++++..|.
T Consensus 1522 RAcqyc----d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1522 RACQYC----DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHhc----chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 333322 23468888999999999999999999999988765 89999999999999999999999999999996
Q ss_pred -CHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH---HHHHHHH
Q 002716 777 -NASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL---HLLHLRA 848 (889)
Q Consensus 777 -~~~~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~---~~l~l~a 848 (889)
........+. +|+.+.+...|+-.+..+|...+.|.-..+.-++.|+.+-+...|++++.+.-.. ..++...
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 3333333333 4999999999999999999999999999999999999999999999999876554 2333333
Q ss_pred HHHHHc-CCHHHHHHHHHHHH
Q 002716 849 AFHEHT-GDVLGALRDCRAAL 868 (889)
Q Consensus 849 ~~~~~~-g~~~~A~~~~~~al 868 (889)
.-|... ||-..+...=.+|.
T Consensus 1678 LeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHhcCchhhHHHHHHHHH
Confidence 333332 55444433333333
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.32 E-value=5.5e-07 Score=92.19 Aligned_cols=98 Identities=8% Similarity=-0.093 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
.-.|.-|..+|+|++|+.++ .+++..+|.++..+.+.+.+|+++.++..|....+.|+.++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCY------------------s~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCY------------------STAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHh------------------hhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 34578899999999997777 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 636 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
....+|...|..-..+|...+|.+.++.++.+.|+.
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 999999999999999999999999999999999987
No 190
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.30 E-value=9e-05 Score=74.84 Aligned_cols=175 Identities=14% Similarity=0.059 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC---HHHHH
Q 002716 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN---ASAYE 782 (889)
Q Consensus 711 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 782 (889)
++..+++-|....+.|++++|+..|+......|. .+...++.++++.+++++|+...++-+...|.+ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4678899999999999999999999999988887 788899999999999999999999999999954 44555
Q ss_pred HHHh--c----------CCHHHHHHHHHHHHhcCCCChHH-----------------HHHHHHHHHhCCCHHHHHHHHHH
Q 002716 783 KRSE--Y----------CDRELTRADLEMVTQLDPLRVYP-----------------YRYRAAVLMDSHKENEAIAELSR 833 (889)
Q Consensus 783 ~~~~--~----------~~~~~A~~~l~~al~l~p~~~~~-----------------~~~la~~~~~~g~~~eA~~~l~k 833 (889)
.++. + .-...|...|+..++.-|+..++ -+..|..|.+.|.+..|+..++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5555 2 12356788889999988876432 23468899999999999999999
Q ss_pred HHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 834 AIAFKADL----HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 834 al~~~p~~----~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
+++..|+. +.+..+...|..+|-.++|...-.-.-...|++++..+-+....
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~~~~~~~~~~~ 248 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQWYKDAYRLLQ 248 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCcchhhhhhccc
Confidence 99998874 45557777888889999996665554455588877776665443
No 191
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.30 E-value=0.0016 Score=75.63 Aligned_cols=226 Identities=15% Similarity=0.044 Sum_probs=117.9
Q ss_pred hcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 524 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
..+++.+|.....++++..|+.. .+..+-|.+..+.|+.++|...+ +..-...+++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~------~a~vLkaLsl~r~gk~~ea~~~L------------------e~~~~~~~~D 76 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL------YAKVLKALSLFRLGKGDEALKLL------------------EALYGLKGTD 76 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHhcCchhHHHHH------------------hhhccCCCCc
Confidence 34566666666666666666665 45555566666666666664333 3222333444
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHH--HHHHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL--KAYAL 681 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~--la~~~ 681 (889)
...+-.+..+|..+|++++|...|+++...+|+ .+.++.+-.+|.+.+.|.+-.+..-+..+..|+...++. ...++
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 555555666666666666666666666666666 555555555565555554443333333344455522221 22111
Q ss_pred HHcCCCCCcchhhhhhHHHHhcchhhhCc---h----hHHHHHHHHHHHHcCChHHHHHHHHHHHc-cCcc---hHHHHH
Q 002716 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLR---K----GQALNNLGSVYVDCGQLDLAADCYSNALK-IRHT---RAHQGL 750 (889)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~Al~~~~~~~~---~----~~~~~~Lg~~y~~~g~~~~A~~~~~~al~-~~p~---~a~~~L 750 (889)
......+.... .-.+.-|.+.....+. + +++... -.+....|++++|.+.+..-+. ..+. .....-
T Consensus 156 qs~~~~~~~~~--~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 156 QSIFSENELLD--PILLALAEKMVQKLLEKKGKIESEAEIILY-LLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred HhccCCccccc--chhHHHHHHHHHHHhccCCccchHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 11110110000 0011112222222111 1 122111 2345667889999998854432 2222 233345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccC
Q 002716 751 ARVHFLKNNKTTAYEEMTKLIKKARNN 777 (889)
Q Consensus 751 a~~~~~~g~~~~A~~~~~~al~~~~~~ 777 (889)
...+...++|.+-.+...+++...+++
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 667788899999999999999888876
No 192
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00019 Score=72.06 Aligned_cols=256 Identities=15% Similarity=0.031 Sum_probs=168.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcc
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 691 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~ 691 (889)
.-++..|+|.+++..-++.-... ...+...++...|..+|.+..-+.....+- .|...+...++..+..-+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~------ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELES------ 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcc------
Confidence 34667888888887776654433 667788888888888888765544333221 222244555555444333
Q ss_pred hhhhhhHHHHhcchhhh-----Cch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHH
Q 002716 692 STVVSLLEDALKCPSDR-----LRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 692 ~~~~~~~~~Al~~~~~~-----~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~ 765 (889)
+.+..+....+. ... ......-|.+|...|++++|.........+ ++...-..++.+..+++-|.+
T Consensus 87 -----~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l---E~~Al~VqI~lk~~r~d~A~~ 158 (299)
T KOG3081|consen 87 -----NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL---EAAALNVQILLKMHRFDLAEK 158 (299)
T ss_pred -----hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 222222111111 111 233444567888999999998887663222 444445567788888888888
Q ss_pred HHHHHHHHhcc-----CHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Q 002716 766 EMTKLIKKARN-----NASAYEKRSEY-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA 839 (889)
Q Consensus 766 ~~~~al~~~~~-----~~~~~~~~~~~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p 839 (889)
.++++.+.+.+ .+.+|.....- +...+|.-.|+..-+..|..+......|.+.+.+|++++|...++.++..++
T Consensus 159 ~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 159 ELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 88888777663 34444444442 4678888899988887888888999999999999999999999999999888
Q ss_pred CH-HHHHHHHHHHHHcCCHHH-HHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 840 DL-HLLHLRAAFHEHTGDVLG-ALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 840 ~~-~~l~l~a~~~~~~g~~~~-A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
.. +.+...-.+-...|...+ -.+...+.....|+++.+-++-.+-
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~eke 285 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKE 285 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 75 555544444444465544 4456677777889999887665543
No 193
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.25 E-value=0.0027 Score=75.77 Aligned_cols=440 Identities=18% Similarity=0.160 Sum_probs=238.7
Q ss_pred HHHHHHHH-HhhhhHHHHHHHHHHhhhHHH-hcccHHHHHHHHHHHHHcCcc--------hhHhhHHHHHhhcCCcHHHH
Q 002716 366 VCFLERLL-ESAETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAY 435 (889)
Q Consensus 366 v~~l~~~~-~~~~~~~~~~~a~~~lG~~~~-~~g~~~eA~~~~~~al~~~~~--------~~~~~la~~~~~~g~~~~A~ 435 (889)
+.-|+.+. +....+.+.+.+..++|.+++ +..++++|+.++++++...+. ....-+++++...+... |.
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~ 119 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-AL 119 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HH
Confidence 34444444 445567778889999999999 889999999999999765421 12334566666666655 55
Q ss_pred HHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHH--H-HHHHHHhccCHHHHHHHHHHHHcCCC--
Q 002716 436 EKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYM--Y-RASSLMTKQNVEAALAEINRILGFKL-- 510 (889)
Q Consensus 436 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~--~-la~~~~~~g~~~~Al~~l~kal~~~p-- 510 (889)
..+++.++.... .+...+.|. . +...++..+++..|++.++.+.....
T Consensus 120 ~~l~~~I~~~~~---------------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 120 KNLDKAIEDSET---------------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred HHHHHHHHHHhc---------------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 555544433222 122222221 1 13333344899999999988876542
Q ss_pred -----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CCCCcchhhhHHHHHHHHHH--HHHhhchhHHHHHHHh
Q 002716 511 -----ALECLELRFCFFLALEDYQAALCDVQAILTL------SPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQL 577 (889)
Q Consensus 511 -----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~a~~~lg~~--~~~~~~~~~A~~~~~l 577 (889)
..-+....+.+....+..+++++..+++... +|+. ......++.++-.+ +...|++..+...++.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~--~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV--HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC--CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233445577777888888888888777442 2332 22223455555443 4456666676665533
Q ss_pred hhh----------cccccccchHHHHH-----------HHHhcCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 578 YDR----------WSSVDDIGSLSVIY-----------QMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 578 ~~~----------~~~~dd~~sl~~~~-----------~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
+.. |...++.+.+..-. -.+.--|.. ..+|+.-|......|..+.|.++++++++.
T Consensus 251 lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~ 330 (608)
T PF10345_consen 251 LQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQ 330 (608)
T ss_pred HHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHH
Confidence 211 44433333321100 000000100 123445566677777777888888877653
Q ss_pred CCCcH--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 002716 634 AASDH--------------------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 634 ~p~~~--------------------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~ 687 (889)
-.+.. ..+++.++...-.|++..|....+.+.+.....
T Consensus 331 i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~---------------- 394 (608)
T PF10345_consen 331 IEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRS---------------- 394 (608)
T ss_pred HHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcC----------------
Confidence 21100 123345555555666666665555444221110
Q ss_pred CCcchhhhhhHHHHhcchhhh--CchhHHHHHHHHHHHHcCChHHHHHHHH--------HHHccCcc-----hHHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDR--LRKGQALNNLGSVYVDCGQLDLAADCYS--------NALKIRHT-----RAHQGLAR 752 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~--~~~~~~~~~Lg~~y~~~g~~~~A~~~~~--------~al~~~p~-----~a~~~La~ 752 (889)
..+. .-.+..++..|..+...|+.+.|...|. .+....+. -+..++..
T Consensus 395 -----------------~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 395 -----------------PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred -----------------ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 0000 0013567778888888899999999997 44444443 45555666
Q ss_pred HHHHcCCHHHHHHHHHHHHH-Hhc---cCHHHHHH------HHhc-----CCHHHHHHHHHHHHhcC-----C--CChHH
Q 002716 753 VHFLKNNKTTAYEEMTKLIK-KAR---NNASAYEK------RSEY-----CDRELTRADLEMVTQLD-----P--LRVYP 810 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al~-~~~---~~~~~~~~------~~~~-----~~~~~A~~~l~~al~l~-----p--~~~~~ 810 (889)
++...+...........+++ ..| +...-+.. ...+ -...++...+..+++.. . -..-+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 66666654332222333333 222 11111110 1111 12346666666655543 1 11234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCH--HHHH-----HHHHHHHHcCCHHHHHHHHHHHHc
Q 002716 811 YRYRAAVLMDSHKENEAIAELSRAIAFK---ADL--HLLH-----LRAAFHEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 811 ~~~la~~~~~~g~~~eA~~~l~kal~~~---p~~--~~l~-----l~a~~~~~~g~~~~A~~~~~~al~ 869 (889)
+..++..+. .|+..+......++.... |+. ..+. +.+..+...|+.++|.....+.-.
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 666777777 788888776666665432 332 3332 556667778999999888776543
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.25 E-value=2.2e-05 Score=82.19 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccch
Q 002716 511 ALECLELRFCFF-LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (889)
Q Consensus 511 ~~~~l~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~s 589 (889)
+....+..|..+ +..|+|++|+..|++.++.+|+..... .+++.+|.+|...|++++|...|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~---~A~y~LG~~y~~~g~~~~A~~~f-------------- 203 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQP---NANYWLGQLNYNKGKKDDAAYYF-------------- 203 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchH---HHHHHHHHHHHHcCCHHHHHHHH--------------
Confidence 445556666654 567899999999999999999875111 47777788888888888776666
Q ss_pred HHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH
Q 002716 590 LSVIYQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 590 l~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 639 (889)
.++++..|+ .+.+++.+|.++..+|++++|...|+++++..|+...
T Consensus 204 ----~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 204 ----ASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----HHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 777766655 4566777777777777777777777777777776554
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00025 Score=71.28 Aligned_cols=246 Identities=15% Similarity=0.062 Sum_probs=161.5
Q ss_pred HHhcccHHHHHHHHHHHHHc-CcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhc----CChhHHHHH
Q 002716 393 RLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWED 467 (889)
Q Consensus 393 ~~~~g~~~eA~~~~~~al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~A~~~ 467 (889)
++-.|.|..++..-++.-.. +......-++|+|...|++...+..+...- .+++.- ......| ...+.-+..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqA-vr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQA-VRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChHHH-HHHHHHHhhCcchhHHHHHH
Confidence 44568888887777666443 333445567888888888654443322111 111100 0000111 001222222
Q ss_pred HHHhh--hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 468 LDKAT--ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 468 ~~~al--~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
+.+.+ ..+.++......-|.+++..|++++|+....+. .+.++..+--.++.++.+.+-|...+++....+.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~ 170 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA 170 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 22222 222333344455578899999999999887762 255667777788899999999999999998887655
Q ss_pred cchhhhHHHHHHHHHHHHH----hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 546 RMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 546 ~~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
. +..|+..+.. .+++.+|.-.| ++.-+..|..+.....++.+++.+|+++
T Consensus 171 t--------LtQLA~awv~la~ggek~qdAfyif------------------eE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 171 T--------LTQLAQAWVKLATGGEKIQDAFYIF------------------EELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred H--------HHHHHHHHHHHhccchhhhhHHHHH------------------HHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 4 3334444332 23455664444 7777778888899999999999999999
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCCh
Q 002716 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKA-EESIQMKRSF 671 (889)
Q Consensus 622 ~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~-~~al~~~p~~ 671 (889)
+|...++.++..++++++.+.++-.+-...|...++...+ .+....+|++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999887776554 4444456665
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.21 E-value=2.8e-05 Score=70.68 Aligned_cols=97 Identities=19% Similarity=0.025 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHH
Q 002716 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~ 593 (889)
+++.+|+++-..|+.++|+..|++++...+... .+..++..+|..+...|++++|..++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---~~~~a~i~lastlr~LG~~deA~~~L------------------ 61 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---DRRRALIQLASTLRNLGRYDEALALL------------------ 61 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHHHHcCCHHHHHHHH------------------
Confidence 455566666666666666666666666543332 11135555666666666666664444
Q ss_pred HHHHhcCCC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 594 YQMLESDAP---KGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 594 ~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
++.+...|+ +..+...++.++...|++++|+..+-.++
T Consensus 62 ~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 62 EEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555 55555556666666666666666655544
No 197
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00062 Score=82.05 Aligned_cols=216 Identities=15% Similarity=0.097 Sum_probs=165.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcC-CC-----CHHHHHHHHHHHHhcccHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KL-----ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~-~p-----~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
.+..++|++.+.-+|+....|...-...++.++.++|.+..+++|.. ++ ....|..+-++...-|.-+.-.+.|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 45677899999999999999998888888999999999999999864 44 1223333333344456666777778
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHH
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~ 615 (889)
+++-+..... ..+..|..+|...+++++|.+++ +++++..-+...+|..+|..++
T Consensus 1521 eRAcqycd~~-------~V~~~L~~iy~k~ek~~~A~ell------------------~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1521 ERACQYCDAY-------TVHLKLLGIYEKSEKNDEADELL------------------RLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHhcchH-------HHHHHHHHHHHHhhcchhHHHHH------------------HHHHHHhcchhhHHHHHHHHHh
Confidence 8877654333 36677788899999999998888 8888877778889999999999
Q ss_pred HhCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchh
Q 002716 616 RLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~ 693 (889)
++++-++|...+.+|++.-|. ..+....-|.+-++.|+.+.+...|+..+...|.-
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR---------------------- 1633 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR---------------------- 1633 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc----------------------
Confidence 999999999999999999887 56667777888888999999999998888766654
Q ss_pred hhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 002716 694 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 694 ~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~ 742 (889)
.+.|.-+...-...|+.+.+...|++++.+.
T Consensus 1634 ------------------tDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1634 ------------------TDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ------------------hhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 1244444444455677777788888877654
No 198
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=3.9e-05 Score=84.46 Aligned_cols=117 Identities=16% Similarity=0.088 Sum_probs=88.8
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc
Q 002716 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~ 599 (889)
.+....++++.|+..++++.+.+|+. ...++.++...++-.+|++.+ ++++..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev---------~~~LA~v~l~~~~E~~AI~ll------------------~~aL~~ 229 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV---------AVLLARVYLLMNEEVEAIRLL------------------NEALKE 229 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH---------HHHHHHHHHhcCcHHHHHHHH------------------HHHHHh
Confidence 33444567777777777777776642 234666666677777775555 788888
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
.|.+..++...+..+...++++.|+...+++++..|++-..|+.|+.+|...|++++|+..+..
T Consensus 230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888888888888888888888866653
No 199
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.19 E-value=3.3e-05 Score=71.27 Aligned_cols=107 Identities=15% Similarity=0.069 Sum_probs=90.5
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
+..++..|...+..|+|++|++.|+.+...-| ...+...+|..|+..|++++|+..+++.++++|+++...- +
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY---a 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY---A 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH---H
Confidence 45678889999999999999999999999888 6788889999999999999999999999999999985443 7
Q ss_pred HHHHHHHHHHhhc---------------hhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHH
Q 002716 555 SQLHMLVREHIDN---------------WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 555 ~~~lg~~~~~~~~---------------~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
++..|.++..... ..+| +..+++.+...|++..+
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A------------------~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA------------------FRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHH------------------HHHHHHHHHHCcCChhH
Confidence 8889988887765 3334 45558888888887654
No 200
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=3.7e-05 Score=73.45 Aligned_cols=113 Identities=14% Similarity=0.017 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+-.-|.-++..|+|++|..-|..+|...|....... ...+...|.+..+++.|+.|+.-. .
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dc------------------s 158 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER-SILYSNRAAALIKLRKWESAIEDC------------------S 158 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH-HHHHhhhHHHHHHhhhHHHHHHHH------------------H
Confidence 344578888889999999999999888887764332 235556777778888888884444 8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 646 (889)
++++++|.+..++.+.|.+|.++..+++|+..|.+.+..+|...++.-..+.
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888888888888888888888888888876655444433
No 201
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.17 E-value=9.9e-07 Score=99.35 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=57.1
Q ss_pred CCCccccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCc------------CceEecCCCCCHHHHHHHHHhhcc
Q 002716 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC------------EDIDLSENNISPSGLRIISDFSVT 244 (889)
Q Consensus 177 ~~~~~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~------------~~i~l~~~~~~~~~~~~ll~~~Yt 244 (889)
+...+.||||.||++.|+|||.||+++|++|+.+|...-+-|.. ..|.+. +|+|..|..+|+|+||
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve--~i~p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE--DIPPLMFEILLHYIYT 631 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec--cCCHHHHHHHHHHHhc
Confidence 34557899999999999999999999999999999765433333 334455 5999999999999999
Q ss_pred CCCC
Q 002716 245 GSLN 248 (889)
Q Consensus 245 ~~~~ 248 (889)
+++-
T Consensus 632 dt~~ 635 (1267)
T KOG0783|consen 632 DTLL 635 (1267)
T ss_pred cccc
Confidence 9753
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.15 E-value=7.4e-06 Score=66.78 Aligned_cols=65 Identities=18% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
++..|++++|+..|++++..+|++.++++.+|.++...|++++|...+++++..+|++ ..+..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999997 5555544
No 203
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=4.4e-05 Score=84.03 Aligned_cols=118 Identities=13% Similarity=0.079 Sum_probs=85.4
Q ss_pred HHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhh
Q 002716 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 487 ~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~ 566 (889)
..+...++++.|++.+++..+.+|. ....++.++...++..+|++.+.++++..|.+. ..+...+..+...+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~------~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS------ELLNLQAEFLLSKK 248 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcC
Confidence 3444567777788777777777764 334466777777777778888888887777776 66666777777777
Q ss_pred chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 567 ~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
+++.|+... +++.+..|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 249 ~~~lAL~iA------------------k~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIA------------------KKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHH------------------HHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 777775555 7777888888888888888888888888887666643
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=5.2e-05 Score=68.86 Aligned_cols=97 Identities=22% Similarity=0.155 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 787 (889)
.++++++.++...|+.++|+..|++++....+ +++.++|..+...|++++|+..+++.+...|+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 46788899999999999999999999987644 7888899999999999777777777766555311
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 788 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
.+......++.++...|+.++|+..+-.++.
T Consensus 73 ------------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 ------------------LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1344445567777788888888887766653
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.12 E-value=1.1e-05 Score=66.72 Aligned_cols=70 Identities=26% Similarity=0.329 Sum_probs=59.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 815 AAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 815 a~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
..+|.+.+++++|+..+++++..+|+.. .+..+|.++..+|++.+|++.++++++..|++++...+..++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 5678889999999999999999999874 444788888888999999999999999999988887776654
No 206
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.046 Score=64.44 Aligned_cols=379 Identities=13% Similarity=0.035 Sum_probs=205.3
Q ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhH
Q 002716 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (889)
Q Consensus 477 ~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 552 (889)
.+++.-..--..++..+-..+-++.+++++-.+. +.....++-.. .-.-|.....++.+++=..|..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLt-Aikad~trVm~YI~rLdnyDa~~------- 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILT-AIKADRTRVMEYINRLDNYDAPD------- 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHH-HhhcChHHHHHHHHHhccCCchh-------
Confidence 3444445556778888888888999988764332 11111111111 11223333444444332222111
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHhhhhccc-----ccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhCCHHHHHH
Q 002716 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSS-----VDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMR 625 (889)
Q Consensus 553 ~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~-----~dd~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 625 (889)
++.+....+-|++|-..|..++-..+ ++++++++ ++.+. .-+.+.+|..+|.+.+..|...+|++
T Consensus 1054 -----ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ld---RA~efAe~~n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1054 -----IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLD---RAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred -----HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHH---HHHHHHHhhCChHHHHHHHHHHHhcCchHHHHH
Confidence 22444445555555444433222111 13333332 22221 13467899999999999999999999
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHH----
Q 002716 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA---- 701 (889)
Q Consensus 626 ~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~A---- 701 (889)
.|-++ +++..+...-.+..+.|+|++-++++..+-+...+...-..+..+|+..+.-. .+++-
T Consensus 1126 Syika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~--------elE~fi~gp 1192 (1666)
T KOG0985|consen 1126 SYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT--------ELEEFIAGP 1192 (1666)
T ss_pred HHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH--------HHHHHhcCC
Confidence 99764 56778888888899999999999999988765443311112333333333100 11111
Q ss_pred ---------hcchhhhCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------------------
Q 002716 702 ---------LKCPSDRLR--------KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-------------------- 744 (889)
Q Consensus 702 ---------l~~~~~~~~--------~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-------------------- 744 (889)
-++|+.... ...-|..|+..+...|+|..|...-++|-....-
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCG 1272 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICG 1272 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcC
Confidence 112222211 1345667888899999999999988887554210
Q ss_pred -------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh-c--CCHHHHHHHHHHHHh---c-----CCC
Q 002716 745 -------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y--CDRELTRADLEMVTQ---L-----DPL 806 (889)
Q Consensus 745 -------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~--~~~~~A~~~l~~al~---l-----~p~ 806 (889)
+-+-.+...|...|-+++-+.+++.++......-.++..++. | .+.++-.+.++--.. + .-+
T Consensus 1273 L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~e 1352 (1666)
T KOG0985|consen 1273 LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAAE 1352 (1666)
T ss_pred ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334557778888999999999999988887766666655554 3 233444433332111 0 012
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHH-------------HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAEL-------------SRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l-------------~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~ 873 (889)
....|..+.-+|.+-..|+.|.... +..+..-.+.+.++..-.+|.. ....-+.++-.+|.-.-+
T Consensus 1353 qahlW~ElvfLY~~y~eyDNAa~tmm~h~teaw~~~~FKdii~kVaNvElyYkAi~FYl~--~~P~llnDlL~vL~pRlD 1430 (1666)
T KOG0985|consen 1353 QAHLWSELVFLYDKYEEYDNAALTMMEHPTEAWDHGQFKDIITKVANVELYYKAIQFYLD--FHPLLLNDLLTVLSPRLD 1430 (1666)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhCChhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH--hChHHHHHHHHhcccccC
Confidence 2345666666666666666654322 1111111111222222222222 223334555555555566
Q ss_pred CHHHHHHHHhhhc
Q 002716 874 DQEMLELHSRVYS 886 (889)
Q Consensus 874 ~~~~l~l~~~~~~ 886 (889)
++.+...+++...
T Consensus 1431 h~r~v~~f~K~~~ 1443 (1666)
T KOG0985|consen 1431 HTRTVSIFSKAGQ 1443 (1666)
T ss_pred chHHHHHHHhcCC
Confidence 7777776666543
No 207
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=3e-05 Score=74.11 Aligned_cols=96 Identities=24% Similarity=0.296 Sum_probs=51.8
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCCh-----hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLS-----YPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCF 521 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~-----~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~ 521 (889)
.|.-++..+.| .+|...|..|+++-|... -.|.++|.+++++++++.|+..+.++++++| ...++..+|.+
T Consensus 101 EGN~~F~ngdy---eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDY---EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccH---HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44545555555 555555555555555432 2344555555555555555555555555555 44555555555
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
|.++..|++|+.+|.+++..+|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 5555555555555555555555544
No 208
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.08 E-value=0.033 Score=61.60 Aligned_cols=377 Identities=13% Similarity=0.004 Sum_probs=206.9
Q ss_pred HHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 469 ~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
++-++.+|.+..+|+.+-.-+..+ .+++..+.|++.++..| .+.++.....-.+...+|+.-...|.+.|..--+ .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-l- 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-L- 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-H-
Confidence 667889999999999998887777 99999999999999999 8888888888888999999999999998864222 1
Q ss_pred hhhhHHHHH-HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH---HHHhcCCCChHHHHHHHHHH---------
Q 002716 548 FEGRVAASQ-LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY---QMLESDAPKGVLYFRQSLLL--------- 614 (889)
Q Consensus 548 ~~~~~~a~~-~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~---~al~~~p~~~~~~~~la~~~--------- 614 (889)
..|. .+..+....++...+...+ ...++ +-+..++....+|...+..+
T Consensus 87 -----DLW~lYl~YVR~~~~~~~~~r~~m--------------~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ 147 (656)
T KOG1914|consen 87 -----DLWKLYLSYVRETKGKLFGYREKM--------------VQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKY 147 (656)
T ss_pred -----hHHHHHHHHHHHHccCcchHHHHH--------------HHHHHHHHHHhccCcccchhHHHHHHHHHcccccccH
Confidence 1221 1233344444444433333 11122 22235566666666555433
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhc-------CCC---
Q 002716 615 LRLNCPEAAMRSLQLARQHAASDHERL--------------VYEGWILYDTSHCEEGLRKAEESIQM-------KRS--- 670 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~p~~~~~~--------------~~lg~~~~~~g~~~eA~~~~~~al~~-------~p~--- 670 (889)
..+.+.+.-.+.|++++..--.+.+-+ ...-.+.-....|..|.+.+++...+ +|.
T Consensus 148 ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~ 227 (656)
T KOG1914|consen 148 EENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPP 227 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence 233455666667888875433332211 11111222334566666666665432 111
Q ss_pred -h--------HHHHHHHHHHHHcCCCCCcch----hhhhhHHHHhcchhhhCchhHHHHH-------HHHHHHHcCC---
Q 002716 671 -F--------EAFFLKAYALADSSQDSSCSS----TVVSLLEDALKCPSDRLRKGQALNN-------LGSVYVDCGQ--- 727 (889)
Q Consensus 671 -~--------~a~~~la~~~~~~~~~~~~~~----~~~~~~~~Al~~~~~~~~~~~~~~~-------Lg~~y~~~g~--- 727 (889)
. +.|.++..--...+....... ...=.++.++.++.-. ++.|+. .+.++...|+
T Consensus 228 ~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~---peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 228 KGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH---PEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhhHHHHHhccccc
Confidence 1 112222222112221111111 1111222222222111 233333 3344444444
Q ss_pred ----hHHHHHHHHHHHccCcc---hHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhccCH-HHHHHHHhc----CCHHH
Q 002716 728 ----LDLAADCYSNALKIRHT---RAHQGLARVHFLKN---NKTTAYEEMTKLIKKARNNA-SAYEKRSEY----CDREL 792 (889)
Q Consensus 728 ----~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g---~~~~A~~~~~~al~~~~~~~-~~~~~~~~~----~~~~~ 792 (889)
.+++..+|+++++.--. ..++.++..-...- +++.-...+++++.....+. -+|.....+ .-...
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlka 384 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKA 384 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHH
Confidence 56778888888765433 33333443322222 35566667777766554221 122222111 23466
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHcc
Q 002716 793 TRADLEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALRDCRAALSV 870 (889)
Q Consensus 793 A~~~l~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~~~~~al~l 870 (889)
|...|.++-+..-..-.++..-|. -|.-.++..-|...|+-.+...++...+. ....++..+|+-..|...|++++..
T Consensus 385 aR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 385 ARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 677777776653333233333332 24456778888888888888888765444 4455666677888888888888876
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.07 E-value=0.00042 Score=65.75 Aligned_cols=145 Identities=14% Similarity=0.020 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 496 EAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 496 ~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
+.+.....+.+...|.....+.+|......|++.+|...|++++. +..++. ..+..++......+++..|...
T Consensus 73 ~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~------a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 73 ERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA------AMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred hHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH------HHHHHHHHHHHhhccHHHHHHH
Confidence 334444444455556555556666666667777777777766664 233333 3444555566666666666444
Q ss_pred HHhhhhcccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 652 (889)
+ ++..+.+|. .+.....+|..+...|++.+|...|+.++...|+ +.+....+..+..+|
T Consensus 147 L------------------e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 147 L------------------EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred H------------------HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 4 555555553 3445566777778888888888888888887776 666666777777778
Q ss_pred CHHHHHHHHHHHH
Q 002716 653 HCEEGLRKAEESI 665 (889)
Q Consensus 653 ~~~eA~~~~~~al 665 (889)
+.++|...+....
T Consensus 208 r~~ea~aq~~~v~ 220 (251)
T COG4700 208 RLREANAQYVAVV 220 (251)
T ss_pred chhHHHHHHHHHH
Confidence 7777766655443
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.07 E-value=1.8e-05 Score=65.59 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=59.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
+..+|...+++++|+..+++++..+|+++..+..+|.++..+|++++|++.++++++..|+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 35688999999999999999999999999999999999999999999999999999999988
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.04 E-value=5.6e-05 Score=67.17 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHH
Q 002716 787 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-----HLLHLRAAFHEHTGDVLGAL 861 (889)
Q Consensus 787 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~l~l~a~~~~~~g~~~~A~ 861 (889)
-|+.+.|++.|.+++.+-|.++.+|+++|..+.-+|+.++|+..+++++++..+- ..+..++.+|..+|+-+.|.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 3666888888888888888888888888888888888888888888888876552 44457888888888888888
Q ss_pred HHHHHHHccCCC
Q 002716 862 RDCRAALSVDPN 873 (889)
Q Consensus 862 ~~~~~al~l~P~ 873 (889)
.+|+.|-++...
T Consensus 136 ~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 136 ADFEAAAQLGSK 147 (175)
T ss_pred HhHHHHHHhCCH
Confidence 888888776543
No 212
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=1.9e-05 Score=64.40 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=60.0
Q ss_pred HHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHH
Q 002716 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (889)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 642 (889)
...|++++|+..+ ++++..+|++..+++.+|.+|.+.|++++|...+++++..+|+++..+.
T Consensus 2 l~~~~~~~A~~~~------------------~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELL------------------EKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHH------------------HHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hhccCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4678999997777 9999999999999999999999999999999999999999999888877
Q ss_pred HHHHH
Q 002716 643 YEGWI 647 (889)
Q Consensus 643 ~lg~~ 647 (889)
.++.+
T Consensus 64 l~a~i 68 (68)
T PF14559_consen 64 LLAQI 68 (68)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 76653
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.00032 Score=70.08 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
..+.++.++...|.|.-.+..++++++.+| .+.....+|.+..+.||.+.|..+++.+-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555556666666666666666666654 55555566666666666666666665443
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.99 E-value=0.00018 Score=66.50 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 786 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 786 (889)
+..++.-|...+..|+|++|++.|+......|. .+...|+.+|+..|++++|+..+++.|+.+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---------- 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------- 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------
Confidence 445555566666666666666666666655554 55555666666666665555555555555552
Q ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 787 YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRA 866 (889)
Q Consensus 787 ~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~ 866 (889)
+|+-.++++..|.+++.... . .+......+-|. +....|...|++
T Consensus 80 -----------------hp~vdYa~Y~~gL~~~~~~~--~---~~~~~~~~drD~-------------~~~~~A~~~f~~ 124 (142)
T PF13512_consen 80 -----------------HPNVDYAYYMRGLSYYEQDE--G---SLQSFFRSDRDP-------------TPARQAFRDFEQ 124 (142)
T ss_pred -----------------CCCccHHHHHHHHHHHHHhh--h---HHhhhcccccCc-------------HHHHHHHHHHHH
Confidence 34555566666655554432 1 111111111111 235688888888
Q ss_pred HHccCCCCHHHHHHHHh
Q 002716 867 ALSVDPNDQEMLELHSR 883 (889)
Q Consensus 867 al~l~P~~~~~l~l~~~ 883 (889)
.++..|++..+.+.-.|
T Consensus 125 lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 125 LVRRYPNSEYAADARKR 141 (142)
T ss_pred HHHHCcCChhHHHHHhc
Confidence 88888888777665444
No 215
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.97 E-value=0.023 Score=64.39 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=50.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc---CCHHHHH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY---CDRELTR 794 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~~~~A~ 794 (889)
-|..+...|+++.|+..|-.|-.. ..-........+|.+|+..+..+-......+........| |+++.|.
T Consensus 712 wg~hl~~~~q~daainhfiea~~~------~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCL------IKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhH------HHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHH
Confidence 356666778888887777554321 1112223344566666665555443333222111111112 5556666
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002716 795 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAI 835 (889)
Q Consensus 795 ~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal 835 (889)
..|.++-. ...--..|-+.|++.+|...-++..
T Consensus 786 ~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 786 ELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc
Confidence 66554421 1122234556667766666655543
No 216
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.052 Score=59.28 Aligned_cols=396 Identities=14% Similarity=0.044 Sum_probs=225.6
Q ss_pred hHHHHHHHHhhhcCCCC---hhhHHHHHHHH-HhccCHHHHHHHHHHHHcCC---C-----CHHHHHHHHHHHHhcc-cH
Q 002716 462 DKRWEDLDKATALDPTL---SYPYMYRASSL-MTKQNVEAALAEINRILGFK---L-----ALECLELRFCFFLALE-DY 528 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~---~~a~~~la~~~-~~~g~~~~Al~~l~kal~~~---p-----~~~~l~~~a~~~~~~g-~~ 528 (889)
++++.+++......|.. +.....+|.++ .-.++++.|...++++..+. | ..++..+++.+|.... .+
T Consensus 26 kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~ 105 (629)
T KOG2300|consen 26 KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF 105 (629)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC
Confidence 56667776666655543 23456677654 56889999999999996543 2 3456778888888777 88
Q ss_pred HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHH
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
..|...+++++++..+.+.... .....|+.+..-..++..|.+.+. -...+.|.+.. ....+.+
T Consensus 106 ~~~KalLrkaielsq~~p~wsc--kllfQLaql~~idkD~~sA~elLa--vga~sAd~~~~------------~ylr~~f 169 (629)
T KOG2300|consen 106 PPAKALLRKAIELSQSVPYWSC--KLLFQLAQLHIIDKDFPSALELLA--VGAESADHICF------------PYLRMLF 169 (629)
T ss_pred chHHHHHHHHHHHhcCCchhhH--HHHHHHHHHHhhhccchhHHHHHh--ccccccchhhh------------HHHHHHH
Confidence 9999999999999888875444 567788889999999999966550 00000011000 0001112
Q ss_pred HH--HHHHHHhCCH---HHHHHHHHHHHHcCCCcHH-------HHHHHHHH-HHhcCCHHHHHHHH---HHHHhc-CC--
Q 002716 609 RQ--SLLLLRLNCP---EAAMRSLQLARQHAASDHE-------RLVYEGWI-LYDTSHCEEGLRKA---EESIQM-KR-- 669 (889)
Q Consensus 609 ~l--a~~~~~~g~~---~~A~~~l~~al~~~p~~~~-------~~~~lg~~-~~~~g~~~eA~~~~---~~al~~-~p-- 669 (889)
.+ +.++....+. ..+.....+..+....|+. -+..+-.. |...|+...+.... ++.+.. .+
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 22 2222322233 3333334444443333221 12222233 33456655444444 333321 11
Q ss_pred -----------Ch--HHHHHH----HHHHHHc---CCCCCcchhhhhhHHHHhcchhhhCch-----------hHHHHHH
Q 002716 670 -----------SF--EAFFLK----AYALADS---SQDSSCSSTVVSLLEDALKCPSDRLRK-----------GQALNNL 718 (889)
Q Consensus 670 -----------~~--~a~~~l----a~~~~~~---~~~~~~~~~~~~~~~~Al~~~~~~~~~-----------~~~~~~L 718 (889)
.- -.|.-. +.++... +...+-.+.+.+.-++++...++..+. ...+-.+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 11 111111 1111111 101111223333444454443333111 3345566
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc---Ccc---------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 002716 719 GSVYVDCGQLDLAADCYSNALKI---RHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN-NASAYEKRS 785 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~---~p~---------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~ 785 (889)
..+-.-.|++.+|++....+.+. .|. ..+..+|......|.++.|...+..+.+.-.. +-++..+..
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 77777889999999877766543 343 55666888888889999999999988876542 222222211
Q ss_pred h---cCCHHHHHHHHHHHHhcCCCC----------hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 002716 786 E---YCDRELTRADLEMVTQLDPLR----------VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-------HLLH 845 (889)
Q Consensus 786 ~---~~~~~~A~~~l~~al~l~p~~----------~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-------~~l~ 845 (889)
. |-+...+...++-.-.+.|.+ ..+++..|...+..+++.||...+.+.++..... -.+.
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 1 212222333333323345543 3456677888889999999999999999876332 1222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCC
Q 002716 846 LRAAFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 846 l~a~~~~~~g~~~~A~~~~~~al~l~P~ 873 (889)
+++.+....|+..++.+..+-++++..+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 6778888889999999999998877533
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.00015 Score=73.94 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=94.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~ 557 (889)
.|..|.-++..|+|..|...|..-++.-| .+++++++|.+++.+|+|+.|...|..+.+..|+++... +++.-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp---dallK 220 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP---DALLK 220 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh---HHHHH
Confidence 67888889999999999999999999888 688999999999999999999999999999988877433 47889
Q ss_pred HHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHH
Q 002716 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (889)
Q Consensus 558 lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~ 609 (889)
+|.+...+|+.++|...+ +++++..|+...+...
T Consensus 221 lg~~~~~l~~~d~A~atl------------------~qv~k~YP~t~aA~~A 254 (262)
T COG1729 221 LGVSLGRLGNTDEACATL------------------QQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHhcCHHHHHHHH------------------HHHHHHCCCCHHHHHH
Confidence 999999999999997766 9999999988776543
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.93 E-value=3.3e-05 Score=84.30 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=66.6
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
..+|+++..++++|.+|...|++++|+..|+++++++|++.++ ++++|.+|..+|++++|+..+++++++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999999999999865 999999999999999999999999987
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=0.00022 Score=72.75 Aligned_cols=106 Identities=14% Similarity=0.015 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
++..|.-++..|+|..|...|.+-++..|+..... .+++.||.+++.+|+++.|...| .
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~---nA~yWLGe~~y~qg~y~~Aa~~f------------------~ 202 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTP---NAYYWLGESLYAQGDYEDAAYIF------------------A 202 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccc---hhHHHHHHHHHhcccchHHHHHH------------------H
Confidence 66667888889999999999999999999987333 47888888888888888886666 5
Q ss_pred HHHhcCC---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH
Q 002716 595 QMLESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (889)
Q Consensus 595 ~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 641 (889)
.+.+..| .-++.++.+|.+..++|+.++|...|+++++..|+...+.
T Consensus 203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5555544 4456778888888888888888888888888888765543
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.86 E-value=4.1e-05 Score=64.32 Aligned_cols=63 Identities=29% Similarity=0.361 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC---c-c-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR---H-T-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~---p-~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
+.++.++|.+|...|++++|+.+|++++++. + + .++.++|.++...|++++|++.+++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4689999999999999999999999999762 1 1 688899999999999999999999998764
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.84 E-value=0.0014 Score=62.25 Aligned_cols=124 Identities=20% Similarity=0.163 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccC--cc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHH
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALKIR--HT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 791 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~~~--p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 791 (889)
.+.||......|++.+|...|++++.-- .+ ..+.++++..+..+++..|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~--------------------------- 144 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ--------------------------- 144 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH---------------------------
Confidence 3445555555555555555555555321 11 44455555555555554444
Q ss_pred HHHHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002716 792 LTRADLEMVTQLDPL--RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAAL 868 (889)
Q Consensus 792 ~A~~~l~~al~l~p~--~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al 868 (889)
..+++..+.+|. .+.....+|.++...|++.+|...|+.++...|++..-...+.....+|+..+|...+..+.
T Consensus 145 ---~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 145 ---QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred ---HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 444444444443 35567778889999999999999999999999998666666677777788888777665554
No 222
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.81 E-value=0.00049 Score=61.33 Aligned_cols=86 Identities=20% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHH
Q 002716 486 ASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (889)
Q Consensus 486 a~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~ 564 (889)
|..+.+.|+.+.|++.|.+++.+.| .+.+|.+++..+.-+|+.++|+..+++++++.-....... .++...|.+|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac--qa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC--QAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH--HHHHHHHHHHHH
Confidence 4444445555555555555555555 4455555555555555555555555555544333321211 344444555555
Q ss_pred hhchhHHHH
Q 002716 565 IDNWTIADC 573 (889)
Q Consensus 565 ~~~~~~A~~ 573 (889)
.|+-+.|..
T Consensus 128 ~g~dd~AR~ 136 (175)
T KOG4555|consen 128 LGNDDAARA 136 (175)
T ss_pred hCchHHHHH
Confidence 555444433
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.79 E-value=3.2e-05 Score=64.99 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CC-C---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AA-S---DHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p-~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
-..++.++|.+|..+|++++|+.+|+++++. .+ + ...++.++|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999865 22 2 2457899999999999999999999999865
No 224
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0055 Score=60.93 Aligned_cols=58 Identities=7% Similarity=-0.053 Sum_probs=40.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
-+..|....+|++|...+.++.+-..++...+.-..++-..+.+......+.++..++
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3566777788888888888888766666655554555666666667777777776666
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.75 E-value=8.8e-05 Score=81.07 Aligned_cols=70 Identities=20% Similarity=0.111 Sum_probs=65.2
Q ss_pred hcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 002716 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALE---CLELRFCFFLALEDYQAALCDVQAILTLS 542 (889)
Q Consensus 473 ~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~---~l~~~a~~~~~~g~~~~A~~~~~~al~~~ 542 (889)
..+|+++.+|+++|..|+..|+|++|+..|++++.++| +.. +++++|.+|..+|++++|+..+++++++.
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999999999999999999 553 59999999999999999999999999973
No 226
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00021 Score=71.43 Aligned_cols=95 Identities=20% Similarity=0.308 Sum_probs=82.6
Q ss_pred EEEEeCCeEEEehHHHHhhcChhhhhhhcCCCC-C-CCcCceEecCCCCCHHHHHHHHHhhccCCCCCCC--HHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL 259 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~-e-~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~--~~~~~~ll 259 (889)
|.+-|||..|..++.-|.....+|++||.+++. + .....|-|. =||.-|..+|+||..|.+. ++ ...+.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 557899999999999999999999999999873 2 234678887 6999999999999988887 76 45788999
Q ss_pred HHHHHHcHHHHHHHHHHHHHhhc
Q 002716 260 IFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 260 ~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
.=|..|.++.|.+.|...++...
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARLI 105 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999887764
No 227
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.73 E-value=0.00019 Score=68.40 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCC
Q 002716 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH----------CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDS 688 (889)
Q Consensus 620 ~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~----------~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~ 688 (889)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+..|++++.++|+. .+++.+|.++...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A--- 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA--- 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH---
Confidence 6788889999999999999999888888776533 568899999999999999 99999999887765
Q ss_pred CcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH 747 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~ 747 (889)
.+ ....-....-|++|..+|++|.+.+|....
T Consensus 84 --------~l-------------------~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 84 --------FL-------------------TPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --------HH----------------------HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred --------hh-------------------cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 10 011112223478889999999999987433
No 228
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.65 E-value=3.8e-05 Score=76.13 Aligned_cols=115 Identities=23% Similarity=0.267 Sum_probs=77.4
Q ss_pred EEEehHHHHhhcChhhhhhhcCCCCCCC---------cCceEecCCCCCHHHHH-HHHHhhccCCCCCCCHHHHHHHHHH
Q 002716 192 KIECDRQKFAALSAPFSAMLNGSFMESL---------CEDIDLSENNISPSGLR-IISDFSVTGSLNGVTPNLLLEILIF 261 (889)
Q Consensus 192 ~~~~hr~vLaa~s~~F~~mf~~~~~e~~---------~~~i~l~~~~~~~~~~~-~ll~~~Yt~~~~~~~~~~~~~ll~~ 261 (889)
+|+||+.|.++||++||.++....+|.+ ..+|.+.+ -|=|.+|. .+++|+||+.++ ++ +
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD-lS---------l 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD-LS---------L 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc-hh---------h
Confidence 7999999999999999999986655432 24677776 56666665 578999999998 43 1
Q ss_pred HHHHcHHHHHHHHHHH-HH--hhc--CCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhcccc
Q 002716 262 ANKFCCERLKDACDRK-LA--SLV--ASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDC 318 (889)
Q Consensus 262 A~~~~~~~l~~~~~~~-l~--~~~--~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~ 318 (889)
|.+ |.+.+-..-+.. +. -.. .-.+.|+.+++.|+-.....|+..|-.|+..+....
T Consensus 331 ~hk-ce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaad 391 (401)
T KOG2838|consen 331 AHK-CEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAAD 391 (401)
T ss_pred ccc-CCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 221 111111111110 10 001 125788899999999888999999999998876443
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0013 Score=65.87 Aligned_cols=140 Identities=12% Similarity=0.085 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 514 CLELRFCFFLALEDYQAALCDVQAILTLS-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+.+..++...|+|.-....+.++++.+ |..+ .....||.+..+.|+.+.|..+|+-.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p------~L~s~Lgr~~MQ~GD~k~a~~yf~~vek------------ 240 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP------QLLSGLGRISMQIGDIKTAEKYFQDVEK------------ 240 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH------HHHHHHHHHHHhcccHHHHHHHHHHHHH------------
Confidence 45667888899999999999999999988 4455 5666799999999999999888821111
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+-+..-..+..+..+.+.+|.-.+++..|...+.+.+..+|.++.+-++.|.++...|+...|++..+.++...|..
T Consensus 241 ~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 241 VTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 1233333455666778889999999999999999999999999999999999999999999999999999999999986
No 230
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.041 Score=54.64 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHc-CChHHHHHHHHHHHccCcc--------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHH
Q 002716 714 ALNNLGSVYVDC-GQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA 780 (889)
Q Consensus 714 ~~~~Lg~~y~~~-g~~~~A~~~~~~al~~~p~--------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 780 (889)
-+..+|.+|... .++++|+.+|+++-+.... ..+...|..-...++|.+|++.|+++....-++..+
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 456678888755 8899999999998775433 455567777778889999999998887766655443
No 231
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0076 Score=59.59 Aligned_cols=139 Identities=14% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccCHHHHHH
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLK-NNKTTAYEEMTKLIKKARNNASAYEK 783 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--------~a~~~La~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~ 783 (889)
..|...+.+|. .++.++|+.++++++++..+ .-+..+|.+|... .++++|+..|+++-+......
T Consensus 75 t~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee----- 148 (288)
T KOG1586|consen 75 TTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE----- 148 (288)
T ss_pred HHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh-----
Confidence 34444444443 34777777777777765433 1223344444433 455555555555544333110
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHH--------HHHHHHHHHHcC
Q 002716 784 RSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL--------LHLRAAFHEHTG 855 (889)
Q Consensus 784 ~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~--------l~l~a~~~~~~g 855 (889)
. ...-...+.-.|..-...++|.+|+..|++.....-++.. +...+.++....
T Consensus 149 ---------s----------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~ 209 (288)
T KOG1586|consen 149 ---------S----------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA 209 (288)
T ss_pred ---------h----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc
Confidence 0 0011122333444445566777777777776654443221 123455666666
Q ss_pred CHHHHHHHHHHHHccCCCCHH
Q 002716 856 DVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 856 ~~~~A~~~~~~al~l~P~~~~ 876 (889)
|.-.|...+++-.+++|.-.+
T Consensus 210 D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 210 DEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cHHHHHHHHHHHHhcCCcccc
Confidence 776777777777777776544
No 232
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0062 Score=63.14 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=121.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hccCHHHHHHH-------HhcC
Q 002716 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK-ARNNASAYEKR-------SEYC 788 (889)
Q Consensus 719 g~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~-------~~~~ 788 (889)
+.+....|+..+|...+++.++..|+ -++..--.+++..|+...-...+++++.. +++.+-.-+.. .+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 44556789999999999999999999 55555667889999999999999999887 56553322222 2237
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-----HLLHLRAAFHEHTGDVLGALRD 863 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-----~~l~l~a~~~~~~g~~~~A~~~ 863 (889)
-+++|.+.-.++++++|.+..+....+.++...|++.++.+...+--..-.+. ..+.--+.++...+.|+.|++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 89999999999999999999999999999999999999999887643322221 2223567778777999999999
Q ss_pred HHHHH--ccCCCCHH
Q 002716 864 CRAAL--SVDPNDQE 876 (889)
Q Consensus 864 ~~~al--~l~P~~~~ 876 (889)
|.+-+ ++..+|..
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 97544 34455553
No 233
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.54 E-value=0.00033 Score=58.13 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=63.4
Q ss_pred EEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCC--CcCceEecCCCCCHHHHHHHHHhh-----ccCC---CCC--C
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMES--LCEDIDLSENNISPSGLRIISDFS-----VTGS---LNG--V 250 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~--~~~~i~l~~~~~~~~~~~~ll~~~-----Yt~~---~~~--~ 250 (889)
|+++. +|.+|-..|-+ |.-|+-.|+||+|...++ ...+|.+++ |....++.+.+|+ ||+. ++. |
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 55554 67778776664 788999999999876555 457999996 9999999999997 6665 222 7
Q ss_pred CHHHHHHHHHHHHHH
Q 002716 251 TPNLLLEILIFANKF 265 (889)
Q Consensus 251 ~~~~~~~ll~~A~~~ 265 (889)
+++.+++||.+|+.+
T Consensus 96 ppemaleLL~aAn~L 110 (112)
T KOG3473|consen 96 PPEMALELLMAANYL 110 (112)
T ss_pred CHHHHHHHHHHhhhh
Confidence 899999999999987
No 234
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.53 E-value=0.0014 Score=62.61 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh---HHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh
Q 002716 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT---IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (889)
Q Consensus 528 ~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~---~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~ 604 (889)
|+.|.+.++.....+|.+. +.++.-|.++..+.++. ++..++ ..++..+++++.++|+..
T Consensus 7 FE~ark~aea~y~~nP~Da------dnL~~WG~ALLELAqfk~g~es~~mi-----------edAisK~eeAL~I~P~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA------DNLTNWGGALLELAQFKQGPESKKMI-----------EDAISKFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHHS-HHHHHHHH-----------HHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHhCcHhH------HHHHHHHHHHHHHHhccCcchHHHHH-----------HHHHHHHHHHHhcCCchH
Confidence 6788899999999999998 66666666666655543 343333 123666799999999999
Q ss_pred HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHcCCCcHH
Q 002716 605 VLYFRQSLLLLRLNC-----------PEAAMRSLQLARQHAASDHE 639 (889)
Q Consensus 605 ~~~~~la~~~~~~g~-----------~~~A~~~l~~al~~~p~~~~ 639 (889)
.+++.+|.+|..++. |++|..+|++|.+.+|++..
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 999999999887653 45555566666666665443
No 235
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00047 Score=74.41 Aligned_cols=146 Identities=14% Similarity=0.114 Sum_probs=102.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHcCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-QMKRSFEAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~p~~~a~~~la~~~~~~~~~ 687 (889)
.....|+...+...+.+..+.+.....+.+.++...+..+|-.|++.+|.+.+..+- ...|..
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~---------------- 274 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG---------------- 274 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc----------------
Confidence 344456777788888888888888888889999999999999999999998765431 111111
Q ss_pred CCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc---------Ccc-----------hHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI---------RHT-----------RAH 747 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~---------~p~-----------~a~ 747 (889)
.....+.....|+|+|.+++..|.|..+..+|.+|++. .|. ..+
T Consensus 275 ----------------~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eil 338 (696)
T KOG2471|consen 275 ----------------TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEIL 338 (696)
T ss_pred ----------------cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhH
Confidence 00000011246677888888888888888888888741 111 677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh
Q 002716 748 QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE 786 (889)
Q Consensus 748 ~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 786 (889)
++.|..|...|+...|.+.|.++......++.+|..+++
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 788888888888888888888888877777777766655
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.51 E-value=0.0068 Score=66.63 Aligned_cols=145 Identities=12% Similarity=0.015 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~ 688 (889)
.+..-..+..++++-++.-++|++++|+-+.++..++.-. .....+|.++|+++++..... +.........|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g--- 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHG--- 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHh---hchhhhhhccc---
Confidence 3444456777888889999999999999889888776532 345788999999988654332 00000000111
Q ss_pred CcchhhhhhHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----hHHHHHHHHHHHcCCHHHH
Q 002716 689 SCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 689 ~~~~~~~~~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~----~a~~~La~~~~~~g~~~~A 763 (889)
..-+. ...+..+. ..+-..++.+..+.|+.++|++.|+..++..|. .++.+|..++...+.+.++
T Consensus 245 --------~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 245 --------HFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred --------chhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 00000 01111111 345567999999999999999999999988776 6889999999999999999
Q ss_pred HHHHHHHH
Q 002716 764 YEEMTKLI 771 (889)
Q Consensus 764 ~~~~~~al 771 (889)
...+.+.-
T Consensus 315 q~lL~kYd 322 (539)
T PF04184_consen 315 QALLAKYD 322 (539)
T ss_pred HHHHHHhc
Confidence 88887753
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.43 E-value=0.04 Score=64.73 Aligned_cols=296 Identities=19% Similarity=0.062 Sum_probs=142.6
Q ss_pred hhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHH
Q 002716 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLD 469 (889)
Q Consensus 390 G~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 469 (889)
|..-...|+..+|.++|+.+.+.|+..+...++.+++.-+. +.-.+.+.|+..|.
T Consensus 219 ~~~~~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~-------------------------g~~~d~e~a~~~l~ 273 (552)
T KOG1550|consen 219 GNERNESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTY-------------------------GVTQDLESAIEYLK 273 (552)
T ss_pred CcccccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccc-------------------------cccccHHHHHHHHH
Confidence 33333445678999999999999999888877776654311 01112255555555
Q ss_pred Hhhhc-----CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q 002716 470 KATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (889)
Q Consensus 470 ~al~~-----dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g-~~~~A~~~~~~al~~~p 543 (889)
.+.+. .-..+.+.+.+|.+|...... .. +++.|+..|.++-...
T Consensus 274 ~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~-----------------------------~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 274 LAAESFKKAATKGLPPAQYGLGRLYLQGLGV-----------------------------EKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHHHhhcCCccccHHHHHHhcCCCC-----------------------------ccccHHHHHHHHHHHHhcC-
Confidence 55431 000233444444444432100 11 4445555555544332
Q ss_pred CCcchhhhHHHHHHHHHHHHHhh---chhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH----
Q 002716 544 DYRMFEGRVAASQLHMLVREHID---NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR---- 616 (889)
Q Consensus 544 ~~~~~~~~~~a~~~lg~~~~~~~---~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~---- 616 (889)
++ .+.+.+|.++..-. +...|.+|| ..+.. -++..+.+++|.+|..
T Consensus 324 -~~------~a~~~lg~~~~~g~~~~d~~~A~~yy------------------~~Aa~--~G~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 324 -NP------DAQYLLGVLYETGTKERDYRRAFEYY------------------SLAAK--AGHILAIYRLALCYELGLGV 376 (552)
T ss_pred -Cc------hHHHHHHHHHHcCCccccHHHHHHHH------------------HHHHH--cCChHHHHHHHHHHHhCCCc
Confidence 22 34444444444332 334454444 33322 2344555555555543
Q ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhh
Q 002716 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~ 695 (889)
.-+...|..++.++.+.+ .+.+.+.++..+..- +.++.+.-.+.......-+. +.. .+..+...+..........
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~-~q~-~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEV-AQS-NAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhH-Hhh-HHHHHHHhccccccccccc
Confidence 235666777777776665 344444444444322 55555555544443322111 000 1111111111111112223
Q ss_pred hhHHHHhcchhhhC--chhHHHHHHHHHHHHc----CChHHHHHHHHHHHccCcchHHHHHHHHHHHc---CCHHHHHHH
Q 002716 696 SLLEDALKCPSDRL--RKGQALNNLGSVYVDC----GQLDLAADCYSNALKIRHTRAHQGLARVHFLK---NNKTTAYEE 766 (889)
Q Consensus 696 ~~~~~Al~~~~~~~--~~~~~~~~Lg~~y~~~----g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~---g~~~~A~~~ 766 (889)
...+.+...+.+.. ....+...||.+|..- .+++.|..+|.+|.... .....++|..+..- .....|..+
T Consensus 453 ~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred cchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 34444554454442 2255667777776644 34777777777777666 56666666655431 014445555
Q ss_pred HHHHHH
Q 002716 767 MTKLIK 772 (889)
Q Consensus 767 ~~~al~ 772 (889)
+.++.+
T Consensus 532 ~~~~~~ 537 (552)
T KOG1550|consen 532 YDQASE 537 (552)
T ss_pred HHHHHh
Confidence 554444
No 238
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.41 E-value=0.032 Score=64.07 Aligned_cols=114 Identities=18% Similarity=-0.017 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHhCCCHHHHHH
Q 002716 758 NNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLR----VYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 758 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~----~~~~~~la~~~~~~g~~~eA~~ 829 (889)
...+.|.+.+....+..|+........+.+ |+.++|+..|++++.....- .-.++.+|++++-.++|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 355666666666666666666555555553 66666666666666432221 2357789999999999999999
Q ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHccC
Q 002716 830 ELSRAIAFKADLHLL--HLRAAFHEHTGDV-------LGALRDCRAALSVD 871 (889)
Q Consensus 830 ~l~kal~~~p~~~~l--~l~a~~~~~~g~~-------~~A~~~~~~al~l~ 871 (889)
.+.+..+.+.-...+ +..|.++...|+. ++|.+.++++-.+-
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999876665333 3888999999999 88888888776543
No 239
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.38 E-value=0.58 Score=56.01 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=84.4
Q ss_pred hHHHHHHHHhhhcCC----CChhhHHHHHHHHH-hccCHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhcccHH
Q 002716 462 DKRWEDLDKATALDP----TLSYPYMYRASSLM-TKQNVEAALAEINRILGFKL-------ALECLELRFCFFLALEDYQ 529 (889)
Q Consensus 462 ~~A~~~~~~al~~dp----~~~~a~~~la~~~~-~~g~~~~Al~~l~kal~~~p-------~~~~l~~~a~~~~~~g~~~ 529 (889)
..|+.+++.+++..+ ....+++.+|.+++ ...+++.|...++|++.+.. ...+.++++.++...+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 667777777774221 12345666777766 67777888888777765542 2334556677777777666
Q ss_pred HHHHHHHHHHHhCCCCcchhhhHHHHHHH-HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcC--CCChHH
Q 002716 530 AALCDVQAILTLSPDYRMFEGRVAASQLH-MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVL 606 (889)
Q Consensus 530 ~A~~~~~~al~~~p~~~~~~~~~~a~~~l-g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~--p~~~~~ 606 (889)
|...+++.++...+........ +..++ ...+...+++..|...+ +...... ++++.+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~-~frll~~~l~~~~~d~~~Al~~L------------------~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYY-AFRLLKIQLALQHKDYNAALENL------------------QSIAQLANQRGDPAV 177 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHH-HHHHHHHHHHHhcccHHHHHHHH------------------HHHHHHhhhcCCHHH
Confidence 7777777777665544333322 33333 22222335666664444 5444433 233322
Q ss_pred ----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 607 ----YFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 607 ----~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
....+.++...+.++.+++.++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2233555566666677777766663
No 240
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.36 E-value=0.00042 Score=50.79 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 646 (889)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467778888888888888888888888888888888877764
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00044 Score=68.30 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=83.9
Q ss_pred cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc
Q 002716 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL 525 (889)
Q Consensus 447 ~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~ 525 (889)
..|.-++....| +.|+..|.+||.++|+.+..|.++|.++++.++|+.+.....++++++| ....++.+|......
T Consensus 15 E~gnk~f~~k~y---~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 15 EQGNKCFIPKRY---DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hccccccchhhh---chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 345556666677 8899999999999999999999999999999999999999999999999 788899999999999
Q ss_pred ccHHHHHHHHHHHHHhC
Q 002716 526 EDYQAALCDVQAILTLS 542 (889)
Q Consensus 526 g~~~~A~~~~~~al~~~ 542 (889)
..|++|+..++++..+.
T Consensus 92 ~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLL 108 (284)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999999997654
No 242
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.34 E-value=0.00031 Score=76.59 Aligned_cols=92 Identities=20% Similarity=0.282 Sum_probs=86.8
Q ss_pred HHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHH
Q 002716 452 YQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 452 ~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~ 530 (889)
...-..| +.|+..|.+||+++|+.+..+-.++..+.+.+++..|+..+.++++.+| ...+++.+|....+.+++.+
T Consensus 14 ~l~~~~f---d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVF---DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchH---HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3344556 9999999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred HHHHHHHHHHhCCCCc
Q 002716 531 ALCDVQAILTLSPDYR 546 (889)
Q Consensus 531 A~~~~~~al~~~p~~~ 546 (889)
|...|++...+.|+.+
T Consensus 91 A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHhhhcCcCcH
Confidence 9999999999999999
No 243
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.34 E-value=0.00053 Score=59.92 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred EEEEeCCeEEEehHHHHh-hcChhhhhhhcCC---CCCCCcCceEecCCCCCHHHHHHHHHhhcc-CCCCCCCHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLa-a~s~~F~~mf~~~---~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt-~~~~~~~~~~~~~l 258 (889)
|+|-|||+.|..-+..|. ....+|..||.++ ........+-|. -+|..|+.+|+|+.+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4466999999975 444555777776 799999999999999 67772235678899
Q ss_pred HHHHHHHcHHHH-HHHH
Q 002716 259 LIFANKFCCERL-KDAC 274 (889)
Q Consensus 259 l~~A~~~~~~~l-~~~~ 274 (889)
+.-|+.|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999988887 4443
No 244
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0028 Score=62.88 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=90.4
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhH
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDK 463 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 463 (889)
-++++-|+-++..|+|.+|...|+.|+.. +..++..-++- +.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-------------------------l~~L~lkEkP~-------------e~ 220 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-------------------------LRNLQLKEKPG-------------EP 220 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH-------------------------HHHHHhccCCC-------------Ch
Confidence 46889999999999999999999988641 11111111110 00
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 002716 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (889)
Q Consensus 464 A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~ 542 (889)
+.++++......+.+.+.+++..|+|-++++..+.++...| +..+++.+|......-+.++|..++.++|+++
T Consensus 221 ------eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 221 ------EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred ------HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 11223333445677888999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCc
Q 002716 543 PDYR 546 (889)
Q Consensus 543 p~~~ 546 (889)
|.-.
T Consensus 295 psla 298 (329)
T KOG0545|consen 295 PSLA 298 (329)
T ss_pred hhhH
Confidence 8766
No 245
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.32 E-value=0.026 Score=62.67 Aligned_cols=97 Identities=21% Similarity=0.145 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHH
Q 002716 788 CDRELTRADLEMVTQLDPLRVY-PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLL-HLRAAFHEHTGDVLGALRDCR 865 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~-~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l-~l~a~~~~~~g~~~~A~~~~~ 865 (889)
|+...|.+++..|+...|.... ...++|+++.+-|....|-..+.+++.+.-..+.. +..|..+..+.+.++|++.++
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 8999999999999999986543 57789999999999999999999999887543333 367888888899999999999
Q ss_pred HHHccCCCCHHHHHHHHhh
Q 002716 866 AALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 866 ~al~l~P~~~~~l~l~~~~ 884 (889)
+|++++|+++++-+-+.++
T Consensus 701 ~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHhcCCCChhhHHHHHHH
Confidence 9999999999887766554
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0097 Score=61.74 Aligned_cols=161 Identities=12% Similarity=-0.015 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
+-....+.+.+..|++.+|-....++|+..|.+. -++..--.++...|+...-...+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~k~ai----------------- 160 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGKKNAI----------------- 160 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhhhhHH-----------------
Confidence 3344456677788889898888999999889887 55555556777777766554444
Q ss_pred HHHHHhc-CCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 593 IYQMLES-DAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 593 ~~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
++.+-. +|+- ..+.-.++..+.+.|-|++|.+..++++++++.+..+....+.++...|++.++.+...+.-..=
T Consensus 161 -~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~W 239 (491)
T KOG2610|consen 161 -EKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDW 239 (491)
T ss_pred -HHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccch
Confidence 666554 4444 34455677778888999999999999999999999999999999999999999888776643211
Q ss_pred CC-h----HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh
Q 002716 669 RS-F----EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (889)
Q Consensus 669 p~-~----~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~ 708 (889)
.. . -.|...+..+...+ .++.|+++|...
T Consensus 240 r~s~mlasHNyWH~Al~~iE~a-----------eye~aleIyD~e 273 (491)
T KOG2610|consen 240 RQSWMLASHNYWHTALFHIEGA-----------EYEKALEIYDRE 273 (491)
T ss_pred hhhhHHHhhhhHHHHHhhhccc-----------chhHHHHHHHHH
Confidence 11 1 12333445555555 777777777664
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.30 E-value=0.016 Score=63.11 Aligned_cols=188 Identities=14% Similarity=0.073 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC-Ch-HHH
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYD---TSHCEEGLRKAEESIQMKR-SF-EAF 674 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~lg~~~~~---~g~~~eA~~~~~~al~~~p-~~-~a~ 674 (889)
+.+..++-..|....+|+.-++..+..-.. -++.+.+.+.+|.++.+ .|+.++|+..+..++.... .+ +.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445556667788999999988888877665 45567788889999998 9999999999999665443 33 778
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHHHHH
Q 002716 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARV 753 (889)
Q Consensus 675 ~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~La~~ 753 (889)
-..|.+|.+.-... .+......++|+.+|.++.+.+|+ ..-.|++.+
T Consensus 221 gL~GRIyKD~~~~s--------------------------------~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtL 268 (374)
T PF13281_consen 221 GLLGRIYKDLFLES--------------------------------NFTDRESLDKAIEWYRKGFEIEPDYYSGINAATL 268 (374)
T ss_pred HHHHHHHHHHHHHc--------------------------------CccchHHHHHHHHHHHHHHcCCccccchHHHHHH
Confidence 88888876642000 011122389999999999999988 777788888
Q ss_pred HHHcCCHHHHHHHHHHHH-HHhccCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Q 002716 754 HFLKNNKTTAYEEMTKLI-KKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELS 832 (889)
Q Consensus 754 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 832 (889)
+...|...+....+.+.. ..+. + .-++...-.-.+.+.+-.++.+..-.|++++|+..++
T Consensus 269 L~~~g~~~~~~~el~~i~~~l~~-----------l--------lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 269 LMLAGHDFETSEELRKIGVKLSS-----------L--------LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHcCCcccchHHHHHHHHHHHH-----------H--------HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888887544444433332 1100 0 0001111112334555567777777889999999999
Q ss_pred HHHhcCCCHH
Q 002716 833 RAIAFKADLH 842 (889)
Q Consensus 833 kal~~~p~~~ 842 (889)
+++..+|..+
T Consensus 330 ~~~~l~~~~W 339 (374)
T PF13281_consen 330 KAFKLKPPAW 339 (374)
T ss_pred HHhhcCCcch
Confidence 9888887654
No 248
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.30 E-value=0.00021 Score=48.98 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHhccCHHHHHH
Q 002716 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (889)
Q Consensus 468 ~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~ 500 (889)
|++||+++|+++.+|+.+|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999863
No 249
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.24 E-value=0.00039 Score=75.80 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
+++.|+..|.+|++++|+.+..+-+++.++.+.+++..|+..+.+|++..|.. ..++.+|.+...++.+.+|+..|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555555555555555555555554 22224445555555555555555555
Q ss_pred HccCCCCHHHHHHHH
Q 002716 868 LSVDPNDQEMLELHS 882 (889)
Q Consensus 868 l~l~P~~~~~l~l~~ 882 (889)
..+.|+++.+...+.
T Consensus 99 ~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 99 KKLAPNDPDATRKID 113 (476)
T ss_pred hhcCcCcHHHHHHHH
Confidence 555555555554443
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.05 Score=54.39 Aligned_cols=146 Identities=14% Similarity=-0.016 Sum_probs=92.0
Q ss_pred HHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhc
Q 002716 488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~ 567 (889)
.|.+.|..+-|-..++++ --....-+.++|+.+|++++.+-.+..........+.-.+.++.+.+.
T Consensus 100 lY~E~GspdtAAmaleKA--------------ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKA--------------AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHHHhCCcchHHHHHHHH--------------HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 355555555555555543 223456788889999998887755444333323344556778888899
Q ss_pred hhHHHHHHHhhhhcccccccchHHHHHHHHhc--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCcHHHH
Q 002716 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA----ASDHERL 641 (889)
Q Consensus 568 ~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~~~~~~ 641 (889)
+++|-..+ +....-.++. .|.-...+...-.+|+...+|..|.++++...+.. |++..+.
T Consensus 166 f~Eaa~a~--------------lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 166 FTEAATAF--------------LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred hhHHHHHH--------------HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 99986666 3333333333 34444556666677788889999999999866542 4445555
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 002716 642 VYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 642 ~~lg~~~~~~g~~~eA~~~~~ 662 (889)
-+|-. .+..|+.++......
T Consensus 232 enLL~-ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLT-AYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHH-HhccCCHHHHHHHHc
Confidence 55533 456788887766654
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.027 Score=61.29 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc----CCCChHHHHHHHHHHHH---hCCHHHHHHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----DAPKGVLYFRQSLLLLR---LNCPEAAMRS 626 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~ 626 (889)
....+-..|...++|+.-+++. +.+-.. -+..+.+.+.+|.++.+ .|+.++|+..
T Consensus 143 iv~~lllSyRdiqdydamI~Lv------------------e~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i 204 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLV------------------ETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI 204 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHH------------------HHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 4445556788899998876666 333333 35567788899999999 9999999999
Q ss_pred HHH-HHHcCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhh
Q 002716 627 LQL-ARQHAASDHERLVYEGWILYD---------TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (889)
Q Consensus 627 l~~-al~~~p~~~~~~~~lg~~~~~---------~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~ 696 (889)
+.. .....+.+++.+...|.+|-+ ....++|+..|.++..++|+.-.-.+++.++.-.|.....+....+
T Consensus 205 l~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 205 LLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHH
Confidence 998 455567789999999999854 2347899999999999998874445566666666643322222111
Q ss_pred hHHHHhcch-hhh----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc
Q 002716 697 LLEDALKCP-SDR----LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 697 ~~~~Al~~~-~~~----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~ 744 (889)
.--..-... ++. ...-+.+..++.+..-.|++++|+++++++++..|.
T Consensus 285 i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 285 IGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 100000000 011 111334444555555566666666666666666544
No 252
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.0004 Score=47.56 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIA 829 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~ 829 (889)
|+++++++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.022 Score=58.88 Aligned_cols=159 Identities=16% Similarity=0.037 Sum_probs=111.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg 559 (889)
.-+..+.-....|++.+|...|..++...| +.++...++.+|...|+.+.|...+.. .|...... .+ .+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~----~~--~~ 205 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDK----AA--HG 205 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccchhh----HH--HH
Confidence 345567778899999999999999999999 889999999999999999998776654 34443110 11 11
Q ss_pred HHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--Cc
Q 002716 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA--SD 637 (889)
Q Consensus 560 ~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~ 637 (889)
+..+..-...| .+.+....+++.+..+|++..+.+.+|..+...|+.++|...+-..++.+- .+
T Consensus 206 -l~a~i~ll~qa-------------a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 206 -LQAQIELLEQA-------------AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred -HHHHHHHHHHH-------------hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 01111111111 122335566888999999999999999999999999999999888887654 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002716 638 HERLVYEGWILYDTSHCEEGLRKAEE 663 (889)
Q Consensus 638 ~~~~~~lg~~~~~~g~~~eA~~~~~~ 663 (889)
..+...+-.++.-.|.-+.+...|++
T Consensus 272 ~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 272 GEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 55566666666666654444444443
No 254
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00091 Score=66.16 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=79.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHH
Q 002716 484 YRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (889)
Q Consensus 484 ~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~ 562 (889)
..|..++...+|+.|+..|.+++.++| .+..+..++.++++..+++.+....+++++++|+.. .+.+.+|...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v------k~h~flg~~~ 88 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV------KAHYFLGQWL 88 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH------HHHHHHHHHH
Confidence 457778888899999999999999999 678888999999999999999999999999999999 8999999999
Q ss_pred HHhhchhHHHHHH
Q 002716 563 EHIDNWTIADCWL 575 (889)
Q Consensus 563 ~~~~~~~~A~~~~ 575 (889)
.....+++|+..+
T Consensus 89 l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 89 LQSKGYDEAIKVL 101 (284)
T ss_pred HhhccccHHHHHH
Confidence 9999999997766
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.12 E-value=0.017 Score=63.73 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=113.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHH
Q 002716 646 WILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD 724 (889)
Q Consensus 646 ~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~ 724 (889)
.-..+..+.+.-++..++|++++|+. .++..++.-... ...++.+.++++++-++...........
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~-------------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAS-------------TIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc-------------CHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 34446778888999999999999999 888777753222 3455555555554433222222111122
Q ss_pred cCChHHHHHHHHHHHccCcc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 725 CGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL 803 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~-~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l 803 (889)
.|..-++. ..-..++- .+...||.+..+.|+.++|++.+..+++..|..
T Consensus 243 ~g~~~e~~----~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-------------------------- 292 (539)
T PF04184_consen 243 HGHFWEAW----HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-------------------------- 292 (539)
T ss_pred ccchhhhh----hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc--------------------------
Confidence 22211111 00111222 667789999999999988888888887776621
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCHHHHH-HHHHHHHH-cCC---------------HHHHHHHHH
Q 002716 804 DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAF-KADLHLLH-LRAAFHEH-TGD---------------VLGALRDCR 865 (889)
Q Consensus 804 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~-~p~~~~l~-l~a~~~~~-~g~---------------~~~A~~~~~ 865 (889)
++..++.++..++...+.|.++...+.+-=++ -|....+. ..+.+..+ .+| -..|.+.+.
T Consensus 293 --~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~ 370 (539)
T PF04184_consen 293 --DNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIH 370 (539)
T ss_pred --chhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHH
Confidence 23446677888888888888888888775333 23433322 22221111 122 234778899
Q ss_pred HHHccCCCCHHHH
Q 002716 866 AALSVDPNDQEML 878 (889)
Q Consensus 866 ~al~l~P~~~~~l 878 (889)
+|++.+|.-+..+
T Consensus 371 RAvefNPHVp~YL 383 (539)
T PF04184_consen 371 RAVEFNPHVPKYL 383 (539)
T ss_pred HHHHhCCCCchhh
Confidence 9999999887765
No 256
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.08 E-value=1.1 Score=53.26 Aligned_cols=119 Identities=18% Similarity=0.022 Sum_probs=87.0
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhh
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL----------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p----------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 551 (889)
-...|-......++.+|-..+.++...-+ -.....++|.+....|++++|++..+.++..-|.+.....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r- 496 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR- 496 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh-
Confidence 34456666778888888888887765443 2356667889999999999999999999999888874444
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc----C--CCChHHHHHHHHHHHHhCC
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES----D--APKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~----~--p~~~~~~~~la~~~~~~g~ 619 (889)
+.+...+|.+..-.|++++|..++ .++.+. + +-...+....+.++..+|+
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~------------------~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALM------------------QQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHH------------------HHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 457888899999999999997777 333333 1 2223344566778888883
No 257
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.014 Score=62.18 Aligned_cols=140 Identities=16% Similarity=0.121 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCH
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL-KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR 790 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 790 (889)
+|..+.....+.+..+.|...|.+|.+..+. ..|...|.+.+. .++.+.|.+.|+.+++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----------------- 65 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------------
Confidence 5666777777777788999999999865543 777777777555 45554455555555554
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 791 ELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLH----LLHLRAAFHEHTGDVLGALRDCRA 866 (889)
Q Consensus 791 ~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~----~l~l~a~~~~~~g~~~~A~~~~~~ 866 (889)
-|.+...|......+...|+.+.|...|++++..-|... ++.....+-...|+.+...+..++
T Consensus 66 -------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 66 -------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp -------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred -------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666666777788888999999999988777654 444555566666999999999999
Q ss_pred HHccCCCCHHHHHHHHh
Q 002716 867 ALSVDPNDQEMLELHSR 883 (889)
Q Consensus 867 al~l~P~~~~~l~l~~~ 883 (889)
+.+..|++..+.....+
T Consensus 133 ~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 133 AEELFPEDNSLELFSDR 149 (280)
T ss_dssp HHHHTTTS-HHHHHHCC
T ss_pred HHHHhhhhhHHHHHHHH
Confidence 99998887766665544
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.017 Score=60.24 Aligned_cols=90 Identities=20% Similarity=0.158 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCC---C--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFK---L--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~---p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
.-|..-|.-|+..++|..|+..|.+.|..+ | +..+|.+++.+.+..|+|..|+.++.+++..+|.+. .+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~------Ka 155 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL------KA 155 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh------hh
Confidence 446667899999999999999999998764 3 677888999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHhhchhHHHHHH
Q 002716 555 SQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~ 575 (889)
++.-+.+...++.+.+|..|.
T Consensus 156 ~~R~Akc~~eLe~~~~a~nw~ 176 (390)
T KOG0551|consen 156 YIRGAKCLLELERFAEAVNWC 176 (390)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 888899999999999998888
No 259
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.01 E-value=0.0009 Score=66.63 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=52.6
Q ss_pred cccEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCc--CceEecCCCCCHHHHHHHHHhhccCCCC
Q 002716 181 LRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--EDIDLSENNISPSGLRIISDFSVTGSLN 248 (889)
Q Consensus 181 ~~Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~--~~i~l~~~~~~~~~~~~ll~~~Yt~~~~ 248 (889)
..||-++.....||+||++||+|||+|+.+.+++-.-... ..|..- |+.-++|.++|+++|||+..
T Consensus 130 c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 130 CGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 4588888888999999999999999999988764311111 344444 69999999999999999876
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.98 E-value=0.0016 Score=44.65 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.97 E-value=0.0015 Score=47.84 Aligned_cols=42 Identities=17% Similarity=-0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
+.+..+|..|...|++++|+..|+++++.+|+++ .++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~------~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP------EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH------HHHHHhhh
Confidence 4566777788888888888888888888888877 66655553
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.069 Score=55.30 Aligned_cols=142 Identities=15% Similarity=0.018 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
-...+.-....|++.+|...+..++...|++. .+...++.++...|+.+.| +
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A----------------------~ 188 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAA----------------------Q 188 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHH----------------------H
Confidence 34446667889999999999999999999998 8889999999999999999 4
Q ss_pred HHHhcCCCChHHHHHHH-----HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 595 QMLESDAPKGVLYFRQS-----LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la-----~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
..+...|.+...-...+ ..+.+.....+ ...+++.+..+|++.++.+.+|..+...|+.++|++.+-..++.+.
T Consensus 189 ~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 189 AILAALPLQAQDKAAHGLQAQIELLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 44455554332211111 22222222221 1235667788999999999999999999999999999998888776
Q ss_pred Ch---HHHHHHHHHHHHcC
Q 002716 670 SF---EAFFLKAYALADSS 685 (889)
Q Consensus 670 ~~---~a~~~la~~~~~~~ 685 (889)
.+ .+...+-.++.-.|
T Consensus 268 ~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 268 GFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cccCcHHHHHHHHHHHhcC
Confidence 55 44444444444444
No 263
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.93 E-value=0.00046 Score=74.65 Aligned_cols=120 Identities=21% Similarity=0.146 Sum_probs=100.5
Q ss_pred CeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHH---HHHHHHHHHc
Q 002716 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (889)
Q Consensus 190 ~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~---~ll~~A~~~~ 266 (889)
+..+.+|+.+++++|++|+.|+.....+.....+++.+ .++..++++..|.|+..-. ...+.+. .+++++.++-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 55699999999999999999999887777777778885 9999999999999996554 3444443 8888999999
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhh
Q 002716 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLR 313 (889)
Q Consensus 267 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~ 313 (889)
.+.|+..|...+.+.+ ...++..++..+..+....+...|..++..
T Consensus 186 ~~~lk~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLI-ETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred cHHHHHHHHHHHHHHH-HhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 9999999999999988 456666777777888888899999988876
No 264
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.47 Score=61.71 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC--------------
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-------------- 777 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~-------------- 777 (889)
+..|.+.+.+....|+++.|..+.-+|.+..+..++...|.....+|+...|+..+++.++.+-.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 688999999999999999999999999999888999999999999999999999999999766422
Q ss_pred ---HHHHHHHHhc----C--CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 778 ---ASAYEKRSEY----C--DRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 778 ---~~~~~~~~~~----~--~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
+.+....+.| + ....-+..|.++.+..|.....++++|
T Consensus 1750 ~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1112222222 2 345567788889999887777777777
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.91 E-value=1.2 Score=50.80 Aligned_cols=177 Identities=10% Similarity=-0.117 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-cCHHHHHHHHh--
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEKRSE-- 786 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~-- 786 (889)
...|......-...|+++...-.|++++---.. ..|...++.....|+.+-|...+..+.+... ..+......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 345666666677889999999999998754322 7888888888888999999888888877664 33333332222
Q ss_pred -c-CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHH---HHHHHHHhcCCCH---HHHH--HHHHHHHHcCC
Q 002716 787 -Y-CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAI---AELSRAIAFKADL---HLLH--LRAAFHEHTGD 856 (889)
Q Consensus 787 -~-~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~---~~l~kal~~~p~~---~~l~--l~a~~~~~~g~ 856 (889)
+ |+++.|...|+...+--|....+-...+......|+.+.+. ..+........+. ..+. ..-..+.-.++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 2 79999999999999877998888777777888889998888 4444444333332 2222 22223444599
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHhhhcCC
Q 002716 857 VLGALRDCRAALSVDPNDQEMLELHSRVYSHE 888 (889)
Q Consensus 857 ~~~A~~~~~~al~l~P~~~~~l~l~~~~~~~~ 888 (889)
.+.|...+.++++..|.+.....-+.++...+
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhC
Confidence 99999999999999999998887777655443
No 266
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0048 Score=61.25 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccc
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTL--------SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~ 584 (889)
.++...|+-++..|+|.+|...|+.++.. .|..+ +|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~--------------------------eW~--------- 223 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP--------------------------EWL--------- 223 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh--------------------------HHH---------
Confidence 45666777788888888888888777642 22222 122
Q ss_pred cccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 585 dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
+++.....++.+.+.+++..|+|-++++.-...+...|.+..+++..|.+....-+.++|...|.++
T Consensus 224 -------------eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 224 -------------ELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred -------------HHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2233344567788889999999999999999999999999999999999988888899999999999
Q ss_pred HhcCCCh
Q 002716 665 IQMKRSF 671 (889)
Q Consensus 665 l~~~p~~ 671 (889)
+.++|..
T Consensus 291 L~ldpsl 297 (329)
T KOG0545|consen 291 LELDPSL 297 (329)
T ss_pred HhcChhh
Confidence 9888876
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.89 E-value=0.25 Score=54.63 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccC------cchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-CH----HH
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN-NA----SA 780 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~------p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~-~~----~~ 780 (889)
...+...+.+....|+++.|...+.++.... ........+.+....|+..+|+..++..+..... .. ..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 5788999999999999999999999999876 3367777899999999999999999999883321 10 00
Q ss_pred HHHHHhcC----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhC------CCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 002716 781 YEKRSEYC----DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDS------HKENEAIAELSRAIAFKADL-HLLHLRAA 849 (889)
Q Consensus 781 ~~~~~~~~----~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~------g~~~eA~~~l~kal~~~p~~-~~l~l~a~ 849 (889)
....+.+. ......... .....+.++..+|...... +..++++..|.+++...|+. ..++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 00000000 000000000 0011134566677766666 88999999999999999986 33333333
Q ss_pred HHHHc-----------------CCHHHHHHHHHHHHccCCC
Q 002716 850 FHEHT-----------------GDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 850 ~~~~~-----------------g~~~~A~~~~~~al~l~P~ 873 (889)
++... .-...|+..|-+++...|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 301 FNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 33222 1124589999999999888
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.24 Score=58.37 Aligned_cols=247 Identities=15% Similarity=0.023 Sum_probs=144.8
Q ss_pred HHHHHHhhhHHH-----hcccHHHHHHHHHHHHH-------cCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchh
Q 002716 383 LLAFHQLGCVRL-----LRKEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW 450 (889)
Q Consensus 383 ~~a~~~lG~~~~-----~~g~~~eA~~~~~~al~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~ 450 (889)
..+.+.+|.+|+ ..++.+.|+.+|+.|.+ .++..+..+++++|........
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~----------------- 306 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK----------------- 306 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc-----------------
Confidence 346677888877 34789999999999987 4555566667766655432110
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhcc---CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---
Q 002716 451 MYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFKLALECLELRFCFFLA--- 524 (889)
Q Consensus 451 ~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g---~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~--- 524 (889)
..+ ..|+..|.++.+.. ++.+.+.+|.++.... ++..|..+|..+.... ...+.+.++.+|..
T Consensus 307 -----~d~---~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 307 -----IDY---EKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLG 375 (552)
T ss_pred -----ccH---HHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCC
Confidence 022 77888888888764 4557788888887655 6789999999986543 45556666666653
Q ss_pred -cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHh-hchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC
Q 002716 525 -LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (889)
Q Consensus 525 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~ 602 (889)
.-+...|..++.++-+.. ++ .+...++..+... +.++.+.-.+ .+.+ ....+..-.
T Consensus 376 v~r~~~~A~~~~k~aA~~g--~~------~A~~~~~~~~~~g~~~~~~~~~~~-~~~a-------------~~g~~~~q~ 433 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG--NP------SAAYLLGAFYEYGVGRYDTALALY-LYLA-------------ELGYEVAQS 433 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc--Ch------hhHHHHHHHHHHccccccHHHHHH-HHHH-------------HhhhhHHhh
Confidence 348899999999998876 33 3444444444332 5666553333 0001 000000001
Q ss_pred ChHHHHHHHHHHHHh----CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCChHHH
Q 002716 603 KGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT----SHCEEGLRKAEESIQMKRSFEAF 674 (889)
Q Consensus 603 ~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~----g~~~eA~~~~~~al~~~p~~~a~ 674 (889)
+.............. .+...+...+.++.. +.+..+...+|.+|+.- .+++.|...|.++-... -.+.
T Consensus 434 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~ 509 (552)
T KOG1550|consen 434 NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQAL 509 (552)
T ss_pred HHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHH
Confidence 111111111111111 134444444544433 34566777777777653 35778888887776555 5566
Q ss_pred HHHHHHHHH
Q 002716 675 FLKAYALAD 683 (889)
Q Consensus 675 ~~la~~~~~ 683 (889)
+++|+.+..
T Consensus 510 ~nlg~~~e~ 518 (552)
T KOG1550|consen 510 FNLGYMHEH 518 (552)
T ss_pred hhhhhHHhc
Confidence 666666544
No 269
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=1.7 Score=52.00 Aligned_cols=222 Identities=13% Similarity=-0.028 Sum_probs=125.0
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
.+|++.|-+| +++..|...-....+.|+|++-+.++.-+-+....+..-..+-..|.+.++..+-... + .
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~f----i-~ 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEF----I-A 1190 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHH----h-c
Confidence 5555555443 3445555555666666666666666655543322111111222233334443332221 1 2
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 621 (889)
.|+.. -....|.-.+..+.|+.|.-.+ .+..-|..++..+..+|+|.
T Consensus 1191 gpN~A-------~i~~vGdrcf~~~~y~aAkl~y--------------------------~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1191 GPNVA-------NIQQVGDRCFEEKMYEAAKLLY--------------------------SNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred CCCch-------hHHHHhHHHhhhhhhHHHHHHH--------------------------HHhhhHHHHHHHHHHHHHHH
Confidence 34443 2333455555555555553333 23344667888888889998
Q ss_pred HHHHHHHHHHHcCC-------------------------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 622 AAMRSLQLARQHAA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 622 ~A~~~l~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
.|...-++|-.... -.++-+-.+...|...|.+++-+..++.++.+.+.+ ..+.
T Consensus 1238 ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1238 GAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred HHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence 88888776532210 012334556777889999999999999999988888 7777
Q ss_pred HHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh---------CchhHHHHHHHHHHHHcCChHHHHHHH
Q 002716 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDR---------LRKGQALNNLGSVYVDCGQLDLAADCY 735 (889)
Q Consensus 676 ~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~---------~~~~~~~~~Lg~~y~~~g~~~~A~~~~ 735 (889)
.+|..|..-... ..-+-++.|-.. ...+..|..+..+|.+-..|+.|.-..
T Consensus 1318 ELaiLYskykp~---------km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1318 ELAILYSKYKPE---------KMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHHHHHhcCHH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 888887765311 111112222111 112567788888888888888776443
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.85 E-value=0.44 Score=52.66 Aligned_cols=143 Identities=15% Similarity=0.064 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----
Q 002716 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---- 671 (889)
Q Consensus 600 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~---- 671 (889)
.......+...+.+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 456677889999999999999999999999987652 246788889999999999999999999888621111
Q ss_pred --HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcc---hhhhCchhHHHHHHHHHHHHc------CChHHHHHHHHHHHc
Q 002716 672 --EAFFLKAYALADSSQDSSCSSTVVSLLEDALKC---PSDRLRKGQALNNLGSVYVDC------GQLDLAADCYSNALK 740 (889)
Q Consensus 672 --~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~---~~~~~~~~~~~~~Lg~~y~~~------g~~~~A~~~~~~al~ 740 (889)
......+... . .+..... .......+.++..+|...... ++.+++...|+++.+
T Consensus 222 ~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~ 286 (352)
T PF02259_consen 222 ISNAELKSGLLE-S--------------LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK 286 (352)
T ss_pred ccHHHHhhcccc-c--------------cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 0000000000 0 0000000 000011156778888877777 899999999999999
Q ss_pred cCcc--hHHHHHHHHHHHc
Q 002716 741 IRHT--RAHQGLARVHFLK 757 (889)
Q Consensus 741 ~~p~--~a~~~La~~~~~~ 757 (889)
..|. .++..+|..+...
T Consensus 287 ~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 287 LDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred hChhHHHHHHHHHHHHHHH
Confidence 9998 7777777765543
No 271
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.82 E-value=1.8 Score=51.59 Aligned_cols=205 Identities=13% Similarity=0.021 Sum_probs=134.0
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCC-------hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC------CHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKL------ALEC 514 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~-------~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p------~~~~ 514 (889)
.+|.......+.+.+..+..+...+.. |.. ...---+|.+....|+.++|++..+.++..-| ...+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~-~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKA-PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCc-CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 467777777783333334444333332 111 12233467888999999999999999998766 3456
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHH--HHHHHhhhhcccccccchHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA--DCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A--~~~~~l~~~~~~~dd~~sl~~ 592 (889)
+...|.+..-.|++++|..+.+++.+....+...+..+-+....+.+...+|+..-| +.-+ ...
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~--------------~~~ 565 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAF--------------NLI 565 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHH
Confidence 777889999999999999999999888666555555445556667778888843333 2233 222
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CC--cHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA----AS--DHE-RLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~--~~~-~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
..+-+...|-+.......+.++...-+++.+.......+... |. ... +++.++.+++..|+.++|.....+..
T Consensus 566 ~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~ 645 (894)
T COG2909 566 REQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELE 645 (894)
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555566665555555555555555777776666655432 22 222 23478999999999999999888876
Q ss_pred hc
Q 002716 666 QM 667 (889)
Q Consensus 666 ~~ 667 (889)
.+
T Consensus 646 ~l 647 (894)
T COG2909 646 RL 647 (894)
T ss_pred HH
Confidence 43
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.038 Score=53.60 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=63.2
Q ss_pred CCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002716 788 CDRELTRADLEMVTQLDPLR---VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDC 864 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~---~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~ 864 (889)
+++++|...++.++....+. .-+-..+|.+..+.|++++|+..+.....-.=..-...++|.++...|+.++|+..|
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay 182 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAY 182 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHH
Confidence 55566666666666432221 224567899999999999999998764322112233458999999999999999999
Q ss_pred HHHHccCCCCH
Q 002716 865 RAALSVDPNDQ 875 (889)
Q Consensus 865 ~~al~l~P~~~ 875 (889)
+++++.+++.+
T Consensus 183 ~kAl~~~~s~~ 193 (207)
T COG2976 183 EKALESDASPA 193 (207)
T ss_pred HHHHHccCChH
Confidence 99999985544
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.81 E-value=0.53 Score=50.23 Aligned_cols=235 Identities=15% Similarity=0.016 Sum_probs=132.6
Q ss_pred HhccCHHHHHHHHHHHHcCC-C-CH-------HHHHHHHHHHHhcc-cHHHHHHHHHHHHHh----CC---CCcch-hhh
Q 002716 490 MTKQNVEAALAEINRILGFK-L-AL-------ECLELRFCFFLALE-DYQAALCDVQAILTL----SP---DYRMF-EGR 551 (889)
Q Consensus 490 ~~~g~~~~Al~~l~kal~~~-p-~~-------~~l~~~a~~~~~~g-~~~~A~~~~~~al~~----~p---~~~~~-~~~ 551 (889)
.++|+++.|...+.|+-... . ++ ..++..|...+..+ +++.|...++++.++ .+ ..+.. ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888886544 1 22 34556677777788 999999999998877 21 22211 234
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 631 (889)
...+..++.++...+..+...+. ...++.+-...|+.+.++...-.+..+.++.+++.+.+.+++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka---------------~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKA---------------LNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHH---------------HHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 46778888888887776544332 223355555668888887655566666899999999999988
Q ss_pred HcCC-CcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHH---HHcCCCCCcchhhhhhHHHHhcc
Q 002716 632 QHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQM--KRSFEAFFLKAYAL---ADSSQDSSCSSTVVSLLEDALKC 704 (889)
Q Consensus 632 ~~~p-~~~~~~~~lg~~-~~~~g~~~eA~~~~~~al~~--~p~~~a~~~la~~~---~~~~~~~~~~~~~~~~~~~Al~~ 704 (889)
..-+ .+...-..+..+ .........|...+...+.. .|....+.....+. .............++.+++.+..
T Consensus 149 ~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~ 228 (278)
T PF08631_consen 149 RSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSI 228 (278)
T ss_pred HhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHH
Confidence 7654 211111111111 11223345677777666643 22221133222222 22211111111112233333332
Q ss_pred hhhh----Cch------hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002716 705 PSDR----LRK------GQALNNLGSVYVDCGQLDLAADCYSNAL 739 (889)
Q Consensus 705 ~~~~----~~~------~~~~~~Lg~~y~~~g~~~~A~~~~~~al 739 (889)
.... +.. ...+-+.|...+..++|++|+.+|+-++
T Consensus 229 v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 229 VEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2222 222 2344456777888888888888888665
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.79 E-value=0.0025 Score=43.51 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
++++.+|.+++..|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666654
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.75 E-value=0.0031 Score=43.16 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.+|..+|.++...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777888888888888888888888877763
No 276
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.026 Score=54.69 Aligned_cols=65 Identities=23% Similarity=0.143 Sum_probs=49.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
-..+|.+...+|++++|++.++...+..=....-.++|.++...|+-++|...|++++..++...
T Consensus 129 ~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 129 ALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 35678888888888888888877544332455567888999999999999999999988875444
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.72 E-value=0.0036 Score=42.72 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
.+++.+|.+++.+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777778888888888888888888877764
No 278
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.71 E-value=0.047 Score=58.27 Aligned_cols=132 Identities=10% Similarity=-0.069 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
+|........+.+..+.|...|.+++...+ ....+...|.+-+. .++.+.|..+|+.+++..|.+. ..+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------DFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------HHHHHH
Confidence 344444555555556666666666665444 55555555666444 4555556666666666666665 344334
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCCh---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
.......++.+.|...| ++++..-|... .+|......-...|+.+......+++.+..|
T Consensus 77 ~~~l~~~~d~~~aR~lf------------------er~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 77 LDFLIKLNDINNARALF------------------ERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHHHTT-HHHHHHHH------------------HHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcHHHHHHHH------------------HHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 44445555555554444 55555444333 3444444444455555555555555555544
Q ss_pred C
Q 002716 636 S 636 (889)
Q Consensus 636 ~ 636 (889)
.
T Consensus 139 ~ 139 (280)
T PF05843_consen 139 E 139 (280)
T ss_dssp T
T ss_pred h
Confidence 4
No 279
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.68 E-value=0.32 Score=54.45 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=58.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHh----cCCH
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDR 790 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~~~ 790 (889)
-|..+...|+...|+.|+..|+...|. -...+||.+....|-...|-..+.+++.+....+-.++..|. +.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 344455678888888888888888776 566777877777777766666666665555433333332222 1344
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHH
Q 002716 791 ELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 791 ~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
+.|++.|++|+.++|+++..-..+-
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHH
Confidence 5555555555555555555444443
No 280
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.62 E-value=1.5 Score=48.09 Aligned_cols=378 Identities=9% Similarity=-0.065 Sum_probs=196.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-C-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~-----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
.....|-++..++++.+|.+.|.++.+... + .+.+..+-.-.+-+++.+.-....-..-+..|... ..
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~------~l 81 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA------YL 81 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch------HH
Confidence 445678899999999999999999876544 2 23333333334456677766666666666777666 45
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
....+.+.++.+++++|.+.+ ..|.+.-+...-.-++.-+..--.+-..-.-.+.++...|++.++...+++.+..-
T Consensus 82 ~LF~~L~~Y~~k~~~kal~~l---s~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 82 PLFKALVAYKQKEYRKALQAL---SVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERL 158 (549)
T ss_pred HHHHHHHHHHhhhHHHHHHHH---HHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 556678899999999997665 33333211000000011111001111222356788899999999999998876532
Q ss_pred -C----CcHHHHHH----HHHHHHh----cCCHHHHHHHHHHHH-------h------------------------cCCC
Q 002716 635 -A----SDHERLVY----EGWILYD----TSHCEEGLRKAEESI-------Q------------------------MKRS 670 (889)
Q Consensus 635 -p----~~~~~~~~----lg~~~~~----~g~~~eA~~~~~~al-------~------------------------~~p~ 670 (889)
| -+.+.+.. +|..|.- ....+-+..+|+.++ . +-|.
T Consensus 159 lkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~ 238 (549)
T PF07079_consen 159 LKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK 238 (549)
T ss_pred hhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH
Confidence 2 23344433 4444421 112222223333221 1 1111
Q ss_pred h--HHHHHHHHHHHHcCCCCCcc-------hhhhhhHHHHhcchhhh----Cch-----hHHHHHHHHHHHHcCChHHHH
Q 002716 671 F--EAFFLKAYALADSSQDSSCS-------STVVSLLEDALKCPSDR----LRK-----GQALNNLGSVYVDCGQLDLAA 732 (889)
Q Consensus 671 ~--~a~~~la~~~~~~~~~~~~~-------~~~~~~~~~Al~~~~~~----~~~-----~~~~~~Lg~~y~~~g~~~~A~ 732 (889)
. ..+..+-....+....+... +...+..+++....+.. +.+ .....++-......++...|.
T Consensus 239 e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 239 ERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred hhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 1 11111111111111111110 00111112222111111 111 334444445556677777777
Q ss_pred HHHHHHHccCcc-------------------------------------------------hHHHHHHHHHHHcCC-HHH
Q 002716 733 DCYSNALKIRHT-------------------------------------------------RAHQGLARVHFLKNN-KTT 762 (889)
Q Consensus 733 ~~~~~al~~~p~-------------------------------------------------~a~~~La~~~~~~g~-~~~ 762 (889)
+++.-....+|. .-+..-|.-+.+.|+ -++
T Consensus 319 q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 319 QYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHH
Confidence 766555444443 001112233444555 677
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHhc--CCHHHHHH--HHHHH---------HhcCC---CChHHHHHHHH--HHHhCCCH
Q 002716 763 AYEEMTKLIKKARNNASAYEKRSEY--CDRELTRA--DLEMV---------TQLDP---LRVYPYRYRAA--VLMDSHKE 824 (889)
Q Consensus 763 A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~A~~--~l~~a---------l~l~p---~~~~~~~~la~--~~~~~g~~ 824 (889)
|++.++.+++-.+.+...-+..-.+ ..+.+|+. .+.+. ..+.| .+.+.-+.+++ -+...|+|
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 7777777777666433221111111 01122211 11111 11222 23344444544 56788999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 825 NEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 825 ~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
.++.-+-.-..++.|.+..+.+.|.+....++|++|...+...
T Consensus 479 ~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 479 HKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 9999988888999999999999999988889999999887653
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.60 E-value=1.5 Score=47.90 Aligned_cols=393 Identities=11% Similarity=0.018 Sum_probs=209.1
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
.+..-++-+|++...|+.+-..+-.+|.+++-.+.+++...-.| -+.++.+.-.--++..+|..-...|.+.|...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 46667888999999999999999999999999999999998888 5555544433345667888888888888764322
Q ss_pred cchhhhHHHHHHHHHHHHH-hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHH---------
Q 002716 546 RMFEGRVAASQLHMLVREH-IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL--------- 615 (889)
Q Consensus 546 ~~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~--------- 615 (889)
. ..|.+. .-|.+ .++.-+...-+.+++. ....-...-.+|.....|...+..+.
T Consensus 109 l------dLW~lY-l~YIRr~n~~~tGq~r~~i~~a---------yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwE 172 (660)
T COG5107 109 L------DLWMLY-LEYIRRVNNLITGQKRFKIYEA---------YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWE 172 (660)
T ss_pred H------hHHHHH-HHHHHhhCcccccchhhhhHHH---------HHHHHhcccccccccchHHHHHHHHHhccccccHH
Confidence 1 122211 11211 1111100000000000 00012233456777777777666543
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcHHH-HH---------HHHHHHH----hcCCHHHHHHHHHHHHhc-------CCCh---
Q 002716 616 RLNCPEAAMRSLQLARQHAASDHER-LV---------YEGWILY----DTSHCEEGLRKAEESIQM-------KRSF--- 671 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~~~~~-~~---------~lg~~~~----~~g~~~eA~~~~~~al~~-------~p~~--- 671 (889)
++.+.+.-.+.|.+++..--++.+- |. +....-- ..--|..|...|++...+ +|-+
T Consensus 173 eQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 173 EQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 2334455555677777653333221 11 1111100 111244566666665433 1211
Q ss_pred ---------HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCc----hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 672 ---------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR----KGQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 672 ---------~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~----~~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
..|.+...--...+..-.. .. ...+.--.+++++. -++.|+.........++-..|+...+++
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~-~~---~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg 328 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGG-RP---HEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERG 328 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCC-Cc---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 1122222111111111100 00 01111112222211 1566776666677788999999999999
Q ss_pred HccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc---------------cC----HHHHHHHHh-c-----------
Q 002716 739 LKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR---------------NN----ASAYEKRSE-Y----------- 787 (889)
Q Consensus 739 l~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~---------------~~----~~~~~~~~~-~----------- 787 (889)
+...|. ....++..|...++-++-...|+++++.-. ++ ......+.. +
T Consensus 329 ~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v 407 (660)
T COG5107 329 IEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV 407 (660)
T ss_pred ccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH
Confidence 888886 455677777777776666666665543221 11 112222211 1
Q ss_pred ---CCHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHhCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHH
Q 002716 788 ---CDRELTRADLEMVTQLDPLRVYPYRYRAA-VLMDSHKENEAIAELSRAIAFKADLHLLH-LRAAFHEHTGDVLGALR 862 (889)
Q Consensus 788 ---~~~~~A~~~l~~al~l~p~~~~~~~~la~-~~~~~g~~~eA~~~l~kal~~~p~~~~l~-l~a~~~~~~g~~~~A~~ 862 (889)
.-.+.|...|.++-+..-....+|..-|. -+...|++.-|...|+-.+...||...+. -.-.+....+|-..|..
T Consensus 408 ~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 408 LRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 13455666676665543222233333332 34557888888888888888888875554 33444555678888888
Q ss_pred HHHHHHccCCCCHHHHHHHH
Q 002716 863 DCRAALSVDPNDQEMLELHS 882 (889)
Q Consensus 863 ~~~~al~l~P~~~~~l~l~~ 882 (889)
.|++++..-.+. ++-++|.
T Consensus 488 LFetsv~r~~~~-q~k~iy~ 506 (660)
T COG5107 488 LFETSVERLEKT-QLKRIYD 506 (660)
T ss_pred HHHHhHHHHHHh-hhhHHHH
Confidence 888776543333 3334443
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.12 Score=59.27 Aligned_cols=173 Identities=12% Similarity=-0.065 Sum_probs=113.3
Q ss_pred HHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHH-HHHHHHHH-------HH--hcccHHHHHH
Q 002716 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALE-CLELRFCF-------FL--ALEDYQAALC 533 (889)
Q Consensus 466 ~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~-~l~~~a~~-------~~--~~g~~~~A~~ 533 (889)
..|+=.+.+-|... ..+-...--.|+-+.++..+.++.+... .+- .+.+++.. -. ...+.+.|..
T Consensus 178 G~f~L~lSlLPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 33444555544322 2223333456788888888888876443 222 22222111 11 2456778888
Q ss_pred HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC----CChHHHHH
Q 002716 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA----PKGVLYFR 609 (889)
Q Consensus 534 ~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p----~~~~~~~~ 609 (889)
.+....+..|+.. --+...|.++...|+.++|+.++ ++++.... -....++.
T Consensus 255 lL~~~~~~yP~s~------lfl~~~gR~~~~~g~~~~Ai~~~------------------~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 255 LLEEMLKRYPNSA------LFLFFEGRLERLKGNLEEAIESF------------------ERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred HHHHHHHhCCCcH------HHHHHHHHHHHHhcCHHHHHHHH------------------HHhccchhhHHhHHHHHHHH
Confidence 8888888888887 45666788888889999997777 54443221 12346788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHhcCCH-------HHHHHHHHHHH
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHC-------EEGLRKAEESI 665 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~lg~~~~~~g~~-------~eA~~~~~~al 665 (889)
+|.++..+++|++|..++.+..+.+.-... ..|..|.++...|+. ++|.+.+.++-
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999999999999999998887665433 345678888888888 66666666654
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=2.1 Score=49.19 Aligned_cols=135 Identities=12% Similarity=-0.050 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 479 ~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
..++...|..+.....|++|.++|.+.-. ...+..+++...+|++-. .....-|++. ..+-.+
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------~e~~~ecly~le~f~~LE----~la~~Lpe~s------~llp~~ 858 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD-------TENQIECLYRLELFGELE----VLARTLPEDS------ELLPVM 858 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHhHHHHHHHHHhhhhHH----HHHHhcCccc------chHHHH
Confidence 45788999999999999999999988643 234455566666665533 3333446666 445556
Q ss_pred HHHHHHhhchhHHHHHHHhhh-hcccccccchHHHHHHHHhcC-----CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002716 559 MLVREHIDNWTIADCWLQLYD-RWSSVDDIGSLSVIYQMLESD-----APKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~-~~~~~dd~~sl~~~~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 630 (889)
|......|.-++|.+.+-... ...+++-.-.+..+.++.++. |.-..+....+.-++..++..+|++..+++
T Consensus 859 a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 677777777777766551110 000111111233444444433 333333444555566667777777766665
No 284
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.013 Score=60.97 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=87.4
Q ss_pred hccCcchhHHHHHhhcCChhHHHHHHHHhhhcC---CC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHH
Q 002716 443 SSVTPLGWMYQERSLYCEGDKRWEDLDKATALD---PT-LSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLEL 517 (889)
Q Consensus 443 ~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~d---p~-~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~ 517 (889)
..++..|.-|+..+.| ..|...|.+.++.. |+ ++..|.++|.+.+..|+|..|+....+++.++| +..+++.
T Consensus 82 en~KeeGN~~fK~Kry---k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRY---KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHhHHHHHhhhH---HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 3455678888888999 99999999999874 43 345688999999999999999999999999999 9999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
-+.+++.+..+++|...++..+.++-+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999987765544
No 285
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.53 Score=47.81 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=55.7
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhcc-CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHH-HHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQ-AALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g-~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~-~A~~~~~~a 538 (889)
..|+..-..++.++|-+-..|.++-.++...+ +..+-+..++.+++-+| +...++-+-.+....|++. .-+...+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 33444445555555555555555554444332 34445555555555555 5555555555555555555 455555555
Q ss_pred HHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 539 l~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
+..+..+. .++....-+....+.|+.-+.+
T Consensus 140 l~~DaKNY------HaWshRqW~~r~F~~~~~EL~y 169 (318)
T KOG0530|consen 140 LDDDAKNY------HAWSHRQWVLRFFKDYEDELAY 169 (318)
T ss_pred Hhccccch------hhhHHHHHHHHHHhhHHHHHHH
Confidence 55555555 4555555555555555554333
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=1.7 Score=49.97 Aligned_cols=32 Identities=9% Similarity=-0.155 Sum_probs=21.0
Q ss_pred HcCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 506 LGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 506 l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
++.+|.+..+.+++......-+++.|...|-+
T Consensus 686 iEdnPHprLWrllAe~Al~Kl~l~tAE~AFVr 717 (1189)
T KOG2041|consen 686 IEDNPHPRLWRLLAEYALFKLALDTAEHAFVR 717 (1189)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 34467777777777777666666666655544
No 287
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.11 E-value=2.9 Score=46.00 Aligned_cols=186 Identities=16% Similarity=0.123 Sum_probs=99.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH---HHHHHcC-CCCCc---chhhhhhHHHHhcchhhhCchhHHHHHHH
Q 002716 647 ILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA---YALADSS-QDSSC---SSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (889)
Q Consensus 647 ~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la---~~~~~~~-~~~~~---~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg 719 (889)
...++++..+|-+++.-...++|+....-.+. ..+.+.- .++.. ....+..++++...-.+..+-..-+..-+
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34567888888888887777788762111110 0111100 00000 01111122222111111111133344445
Q ss_pred HHHHHcCC-hHHHHHHHHHHHccCcchH-HHHHHHHHHHcCCHHHHHH--HHHHHHHHhc------------cCHHHHHH
Q 002716 720 SVYVDCGQ-LDLAADCYSNALKIRHTRA-HQGLARVHFLKNNKTTAYE--EMTKLIKKAR------------NNASAYEK 783 (889)
Q Consensus 720 ~~y~~~g~-~~~A~~~~~~al~~~p~~a-~~~La~~~~~~g~~~~A~~--~~~~al~~~~------------~~~~~~~~ 783 (889)
.-+-+.|+ -++|+..++.+++..|.+. -.+.. ..+-...|.+|+. .+.+++.... .+...-+.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v-~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFTNYDIECENIV-FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 55666666 7889999999988776521 11111 1111222333332 2233332221 22222222
Q ss_pred HH--hc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002716 784 RS--EY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRA 834 (889)
Q Consensus 784 ~~--~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~ka 834 (889)
++ .| |++.++.-+-.=..+++| .+.+++.+|.+++..++|++|-.++.+.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 22 23 788998888888889999 8999999999999999999999998763
No 288
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.05 E-value=0.0024 Score=66.61 Aligned_cols=83 Identities=23% Similarity=0.227 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 789 DRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 789 ~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
.++.|+..|..+++++|.....|-.+|.++.+.++...|+..+..+++++||. .-+..++.....+|++++|..+++.+
T Consensus 129 ~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 129 EFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred chhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence 34555555555555555555555555556666666666666666666666554 22235555555556666666666665
Q ss_pred HccC
Q 002716 868 LSVD 871 (889)
Q Consensus 868 l~l~ 871 (889)
.+++
T Consensus 209 ~kld 212 (377)
T KOG1308|consen 209 CKLD 212 (377)
T ss_pred Hhcc
Confidence 5554
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.96 E-value=0.0098 Score=41.31 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=24.3
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHc
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~~ 412 (889)
++.+||.+|...|+|++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998753
No 290
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.94 E-value=0.099 Score=49.70 Aligned_cols=58 Identities=21% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
...++..+...|++++|+..+++++..+| +...+..+..++...|+..+|+..|++..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44556667777777777777777777777 66677777777777777777777776653
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.78 E-value=0.015 Score=39.55 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002716 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p 669 (889)
+++.+|.++...|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555556666666666665555555
No 292
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.75 E-value=2.3 Score=45.66 Aligned_cols=173 Identities=15% Similarity=0.039 Sum_probs=110.4
Q ss_pred hhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHH
Q 002716 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDL 468 (889)
Q Consensus 389 lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~ 468 (889)
.+......+++..|..++..+-..+...+...++..+....... .+..+|...|
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~--------------------------~~~~~A~~~~ 100 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVS--------------------------RDKTKAADWY 100 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCcc--------------------------ccHHHHHHHH
Confidence 34455577788888888888776444434444443332211110 1125566666
Q ss_pred HHhhhcCCCChhhHHHHHHHHHh----ccCHHHHHHHHHHHHcCCC-C-HHHHHHHHHHHHhcc-------cHHHHHHHH
Q 002716 469 DKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKL-A-LECLELRFCFFLALE-------DYQAALCDV 535 (889)
Q Consensus 469 ~~al~~dp~~~~a~~~la~~~~~----~g~~~~Al~~l~kal~~~p-~-~~~l~~~a~~~~~~g-------~~~~A~~~~ 535 (889)
..+. +..++.+.+.+|..|.. ..+..+|...|+++..... . ......+|.+|..-. +...|+..|
T Consensus 101 ~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~ 178 (292)
T COG0790 101 RCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLY 178 (292)
T ss_pred HHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence 6433 34566677778887776 4588888888888876644 3 344666677666531 334788888
Q ss_pred HHHHHhCCCCcchhhhHHHHHHHHHHHHH----hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH
Q 002716 536 QAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (889)
Q Consensus 536 ~~al~~~p~~~~~~~~~~a~~~lg~~~~~----~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la 611 (889)
.++-... +. .+...+|.+|.. ..++.+|..|| .++-+... ....+.++
T Consensus 179 ~~aa~~~--~~------~a~~~lg~~y~~G~Gv~~d~~~A~~wy------------------~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 179 RKAAELG--NP------DAQLLLGRMYEKGLGVPRDLKKAFRWY------------------KKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHhc--CH------HHHHHHHHHHHcCCCCCcCHHHHHHHH------------------HHHHHCCC--HHHHHHHH
Confidence 8877655 44 677888877755 45778898898 88777766 77778888
Q ss_pred HHHHHhC
Q 002716 612 LLLLRLN 618 (889)
Q Consensus 612 ~~~~~~g 618 (889)
++...|
T Consensus 231 -~~~~~g 236 (292)
T COG0790 231 -LMYLNG 236 (292)
T ss_pred -HHHhcC
Confidence 666655
No 293
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.75 E-value=0.27 Score=46.64 Aligned_cols=111 Identities=20% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHH-HHHHhhhhcccccccchHHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD-CWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~-~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
.|......|+.+.++..+++++.+..+........ ..|-... ..+ +.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------------~~W~~~~r~~l------------------~~- 59 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------------EEWVEPERERL------------------RE- 59 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------------STTHHHHHHHH------------------HH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------------cHHHHHHHHHH------------------HH-
Confidence 34455667888999999999998876554211100 1111110 000 11
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
....+...++..+...|++++|+..+++++..+|.+..++..+..++...|+..+|++.|++..
T Consensus 60 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 60 -----LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp -----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0123456778889999999999999999999999999999999999999999999999998875
No 294
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.74 E-value=0.049 Score=48.43 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=59.1
Q ss_pred cEEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCc-CceEecCCCCCHHHHHHHHHhhccCCCC------------
Q 002716 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLC-EDIDLSENNISPSGLRIISDFSVTGSLN------------ 248 (889)
Q Consensus 183 Dv~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~-~~i~l~~~~~~~~~~~~ll~~~Yt~~~~------------ 248 (889)
.|+++. +|.+|.+.+.+. ..|..++.|+.+.-.+... ..|.++ +|+..+|+.+++|++.-.-.
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~ 79 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPT 79 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccH
Confidence 356665 899999999976 7999999999764322222 578888 59999999999999743211
Q ss_pred ------CCCHHHHHHHHHHHHHH
Q 002716 249 ------GVTPNLLLEILIFANKF 265 (889)
Q Consensus 249 ------~~~~~~~~~ll~~A~~~ 265 (889)
.++.+.+.+|+.||+.+
T Consensus 80 wD~~F~~~d~~~l~dLl~AAnyL 102 (104)
T smart00512 80 WDAEFLKIDQETLFELILAANYL 102 (104)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 04455788888888865
No 295
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.68 E-value=1.4 Score=47.35 Aligned_cols=188 Identities=15% Similarity=0.039 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch--hHHHHHHHHHHHH----
Q 002716 651 TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK--GQALNNLGSVYVD---- 724 (889)
Q Consensus 651 ~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~--~~~~~~Lg~~y~~---- 724 (889)
.+++..|...+..+-.... ..+...++..+.... .+.+...+|...+...... +.+.++||.+|..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~-~~a~~~l~~~y~~g~-------gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 54 PPDYAKALKSYEKAAELGD-AAALALLGQMYGAGK-------GVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccHHHHHHHHHHhhhcCC-hHHHHHHHHHHHhcc-------CccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCc
Confidence 4455555555555443110 034445555554433 1112355555555554333 4577778887776
Q ss_pred cCChHHHHHHHHHHHccCcchH---HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 725 CGQLDLAADCYSNALKIRHTRA---HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVT 801 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~~a---~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al 801 (889)
..+..+|..+|++|.+.....+ ...++..|..-+ ...+.. .+...|...|.++-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~~~~~----------------------~~~~~A~~~~~~aa 182 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QALAVA----------------------YDDKKALYLYRKAA 182 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hhhccc----------------------HHHHhHHHHHHHHH
Confidence 4588999999999988876655 777777776643 110000 01135555555555
Q ss_pred hcCCCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------------CHHHHHH
Q 002716 802 QLDPLRVYPYRYRAAVLMD----SHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTG---------------DVLGALR 862 (889)
Q Consensus 802 ~l~p~~~~~~~~la~~~~~----~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g---------------~~~~A~~ 862 (889)
... ++.+...+|.+|.. ..++.+|..+|.++-+... ....+..+.++.. | +...|..
T Consensus 183 ~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~~~~~~-g~g~~~~~~~~~~~~~~~~~a~~ 258 (292)
T COG0790 183 ELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLGLMYLN-GEGVKKAAFLTAAKEEDKKQALE 258 (292)
T ss_pred Hhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhc-CCCchhhhhcccccCCCHHHHHH
Confidence 543 56777778877755 3377888888888888776 4444444544433 4 8888888
Q ss_pred HHHHHHccCCC
Q 002716 863 DCRAALSVDPN 873 (889)
Q Consensus 863 ~~~~al~l~P~ 873 (889)
.+.++-...+.
T Consensus 259 ~~~~~~~~~~~ 269 (292)
T COG0790 259 WLQKACELGFD 269 (292)
T ss_pred HHHHHHHcCCh
Confidence 88888877654
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.55 E-value=0.023 Score=38.68 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKAD 840 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~ 840 (889)
.+|..+|.+|.+.|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666777777777777777777777777664
No 297
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=1.5 Score=49.38 Aligned_cols=82 Identities=17% Similarity=0.065 Sum_probs=65.1
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQAI 538 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~~~~A~~~~~~a 538 (889)
+...+.+....+..|+++.-.+..|..+...|+.+.|+..++..+...- ..-+++.+|+++..+.+|..|...+..+
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4445556666778899988888889999999998888888888877111 4567788899999999999999999888
Q ss_pred HHhCC
Q 002716 539 LTLSP 543 (889)
Q Consensus 539 l~~~p 543 (889)
.....
T Consensus 330 ~desd 334 (546)
T KOG3783|consen 330 RDESD 334 (546)
T ss_pred Hhhhh
Confidence 76643
No 298
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=2.4 Score=43.33 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=129.7
Q ss_pred HHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhh
Q 002716 489 LMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLA-LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (889)
Q Consensus 489 ~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~ 566 (889)
+.+..+-..|++.-..++..+| +...+..+-.+... ..+..+-+..+.+++..+|.+. ..++..-.+....|
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY------QvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY------QVWHHRRVIVELLG 126 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch------hHHHHHHHHHHHhc
Confidence 3455566788899999999999 66666665555544 4578888999999999999999 78888888888888
Q ss_pred chh-HHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 002716 567 NWT-IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (889)
Q Consensus 567 ~~~-~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg 645 (889)
+.. .- +.....++..+..+-.+|...-.+...-+.++.-+.+..+.++.+--+-.+|...-
T Consensus 127 d~s~rE------------------Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530|consen 127 DPSFRE------------------LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred Ccccch------------------HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheee
Confidence 765 33 33448999999999999999999999999999999999998887665555554322
Q ss_pred HHHHh-cC-----CHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHH-cC
Q 002716 646 WILYD-TS-----HCEEGLRKAEESIQMKRSF-EAFFLKAYALAD-SS 685 (889)
Q Consensus 646 ~~~~~-~g-----~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~-~~ 685 (889)
.+... .| ..+.-+.+..+.|.+.|++ .+|..+..++.. .|
T Consensus 189 fvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 189 FVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred EEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 11111 12 2445677788889999999 888888877774 55
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.45 E-value=0.043 Score=41.68 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 843 LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 843 ~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
.++.++..+..+|+|++|.+..+.+|+.+|+|..+..+...+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 3456667777778888888888888888888888777766554
No 300
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.35 E-value=5.6 Score=43.73 Aligned_cols=439 Identities=15% Similarity=0.063 Sum_probs=230.6
Q ss_pred HHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhc-----CCcHHHHHHHhhhhhcc
Q 002716 371 RLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIK-----GHKLWAYEKLNSVISSV 445 (889)
Q Consensus 371 ~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~ 445 (889)
++.+.-.+++.....|++|-.-+-.+|.+++-++.|++....-+...+ |+..+.. .++......+..++...
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~---aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH---AWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH---HHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 444444556666788999998888999999999999998876555443 3344444 34444444454444433
Q ss_pred Ccc-hhH-H---HHHhh-cCCh------hHHHHHHHHhhhcCCCChhhHHHHHHHHH---------hccCHHHHHHHHHH
Q 002716 446 TPL-GWM-Y---QERSL-YCEG------DKRWEDLDKATALDPTLSYPYMYRASSLM---------TKQNVEAALAEINR 504 (889)
Q Consensus 446 ~~~-g~~-~---~~~~~-~~~~------~~A~~~~~~al~~dp~~~~a~~~la~~~~---------~~g~~~~Al~~l~k 504 (889)
.++ -|+ | ..+.. ...| -+|.+..-..+-.+|.....|-.-+..+. ++.+.+.-...|.+
T Consensus 107 l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 107 LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 222 122 2 11211 1122 22222222233456766666655554432 33445555666777
Q ss_pred HHcCCC-CHHHHHHHH------------H--HHHhcccHHHHHHHHHHHHHhC-------CCCcchhhhHHHHHHHHHHH
Q 002716 505 ILGFKL-ALECLELRF------------C--FFLALEDYQAALCDVQAILTLS-------PDYRMFEGRVAASQLHMLVR 562 (889)
Q Consensus 505 al~~~p-~~~~l~~~a------------~--~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~a~~~lg~~~ 562 (889)
++..-- +.+-+...- . +--..--|..|...|++...+- |.+.....+
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK----------- 255 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANK----------- 255 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcc-----------
Confidence 776422 332221111 0 1111223566777777765442 222211110
Q ss_pred HHhhchhHHHHHHHhhhhccccc------cc---chHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 563 EHIDNWTIADCWLQLYDRWSSVD------DI---GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 563 ~~~~~~~~A~~~~~l~~~~~~~d------d~---~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
..+.... .|+. .-+|..-+ +. .---.+++++.--|-.+.+|+-........++-+.|+...+++...
T Consensus 256 --~~r~s~S-~WlN-wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~ 331 (660)
T COG5107 256 --AARTSDS-NWLN-WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM 331 (660)
T ss_pred --ccccccc-hhhh-HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC
Confidence 0000000 0110 00111000 00 0022456778888888999999998889999999999999998888
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhC-chh
Q 002716 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-RKG 712 (889)
Q Consensus 634 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~-~~~ 712 (889)
.|. ..+.++..|.-..+.++-..+|+++++.- .-.+..+..-...+.+. ..+..-+..-+.. +-.
T Consensus 332 sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L---~r~ys~~~s~~~s~~D~--------N~e~~~Ell~kr~~k~t 397 (660)
T COG5107 332 SPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL---KRKYSMGESESASKVDN--------NFEYSKELLLKRINKLT 397 (660)
T ss_pred CCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH---HHHHhhhhhhhhccccC--------CccccHHHHHHHHhhhh
Confidence 887 55667777766667666667777766310 00011111111111100 0100000000000 112
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc--
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA-RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-- 787 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 787 (889)
.++.-+-+.-.+..-.+.|...|.++-+..-. ..+..-| .-|..+|++..|...++-.+...|+.+..-+..-.|
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 23333344444556678888888888766511 2222222 235678999999999999999988777554444333
Q ss_pred --CCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH
Q 002716 788 --CDRELTRADLEMVTQLDPLR--VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 788 --~~~~~A~~~l~~al~l~p~~--~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
++...|...|++++..-... ...|..+-.--..-|+...++..=++..+..|.-
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 78888888888776532211 2334333334445566666666666666666653
No 301
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.32 E-value=0.016 Score=40.19 Aligned_cols=25 Identities=44% Similarity=0.752 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNAL 739 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al 739 (889)
+.+||.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666544
No 302
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.30 E-value=0.036 Score=37.25 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356778888888888888888888888888864
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.26 E-value=4.8 Score=53.09 Aligned_cols=311 Identities=15% Similarity=0.023 Sum_probs=163.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHH
Q 002716 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (889)
Q Consensus 517 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~a 596 (889)
.+|.+-++.+.|..|+.++++- ...+....... .-+.++-.+|...++++.-.-.. ..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e--~l~fllq~lY~~i~dpDgV~Gv~-------------------~~ 1445 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEE--ALYFLLQNLYGSIHDPDGVEGVS-------------------AR 1445 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHH--HHHHHHHHHHHhcCCcchhhhHH-------------------HH
Confidence 4577778888888888888875 22222221111 23334444666666666542111 11
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFF 675 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~ 675 (889)
...+| .....-..+...|+++.|..+|+++++.+|+....+...-...+..|++...+...+-...-.++. .-++
T Consensus 1446 r~a~~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~ 1521 (2382)
T KOG0890|consen 1446 RFADP----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELN 1521 (2382)
T ss_pred hhcCc----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHH
Confidence 11111 123344556778999999999999999999887777777777778888888888766555444444 4444
Q ss_pred HHHHHH-HHcCCCCCcchhhhhhHHHHhcchhhh-CchhHHHHHHHHHHHHcCChHHHHH--HHHHHHccCcchHHHHHH
Q 002716 676 LKAYAL-ADSSQDSSCSSTVVSLLEDALKCPSDR-LRKGQALNNLGSVYVDCGQLDLAAD--CYSNALKIRHTRAHQGLA 751 (889)
Q Consensus 676 ~la~~~-~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~~~~~~~Lg~~y~~~g~~~~A~~--~~~~al~~~p~~a~~~La 751 (889)
.++.-- ...+ .++.-....... .....+ ..+|.+.....+-+.-.. ..+.+-+ .....+.
T Consensus 1522 s~~~eaaW~l~-----------qwD~~e~~l~~~n~e~w~~-~~~g~~ll~~~~kD~~~~~~~i~~~r~----~~i~~ls 1585 (2382)
T KOG0890|consen 1522 SLGVEAAWRLS-----------QWDLLESYLSDRNIEYWSV-ESIGKLLLRNKKKDEIATLDLIENSRE----LVIENLS 1585 (2382)
T ss_pred HHHHHHHhhhc-----------chhhhhhhhhcccccchhH-HHHHHHHHhhcccchhhHHHHHHHHHH----HhhhhHH
Confidence 433221 2222 222222222211 000111 114554444333221111 1111000 0000011
Q ss_pred HHHHHcCCHHHHHHHHHHHHH------------Hhc------cCHHHHHHHHh----cCCHHHHHHHHHHHHh-------
Q 002716 752 RVHFLKNNKTTAYEEMTKLIK------------KAR------NNASAYEKRSE----YCDRELTRADLEMVTQ------- 802 (889)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~al~------------~~~------~~~~~~~~~~~----~~~~~~A~~~l~~al~------- 802 (889)
.+-. .|-+..+++.+-++-- ... .+..-|.++.. +.+..+-+-.++++.-
T Consensus 1586 a~s~-~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~ 1664 (2382)
T KOG0890|consen 1586 ACSI-EGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN 1664 (2382)
T ss_pred Hhhc-cchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc
Confidence 1100 1122222222222211 111 11122333333 2333343444444431
Q ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 002716 803 LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVD 871 (889)
Q Consensus 803 l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~ 871 (889)
++...+..|...|.+....|+++-|...+-+|.+..+. ....-+|....+.||-..|+..+++.++++
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP-EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 23445788999999999999999999999999887743 344467777777799999999999999655
No 304
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.26 E-value=0.08 Score=40.22 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
++++.+|..++++|+|++|..+.+.+|+.+|++. .+..+...+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~------Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR------QAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H------HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH------HHHHHHHHH
Confidence 5788889999999999999999999999999998 665444443
No 305
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.24 E-value=0.023 Score=59.59 Aligned_cols=87 Identities=21% Similarity=0.169 Sum_probs=61.2
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 755 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 755 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
+..|.+++|++.+..+|+++|..+.+|..++.. .....|+.++..++.++|+....|..++.....+|++.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 345666666666666666666666666655552 5567777777777778777777777777777778888888888
Q ss_pred HHHHHhcCCCH
Q 002716 831 LSRAIAFKADL 841 (889)
Q Consensus 831 l~kal~~~p~~ 841 (889)
+..+.+++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 88887766553
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.22 E-value=0.97 Score=49.25 Aligned_cols=151 Identities=15% Similarity=0.006 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCC------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNC------------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~ 658 (889)
..+++.++.+|.+..+|..+....-..-. .+.-+..|++|++.+|++...+..+-....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 44588899999999999988776554422 355667899999999999998888888888888999999
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---------------hHHHHHHHHHH
Q 002716 659 RKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---------------GQALNNLGSVY 722 (889)
Q Consensus 659 ~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---------------~~~~~~Lg~~y 722 (889)
+.+++++..+|+. ..|...-...... ...-....+...+.+++..+...... ..++.++....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~-~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSN-FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999987 5554332222111 11112233444455554444433110 23334444445
Q ss_pred HHcCChHHHHHHHHHHHccC
Q 002716 723 VDCGQLDLAADCYSNALKIR 742 (889)
Q Consensus 723 ~~~g~~~~A~~~~~~al~~~ 742 (889)
.+.|..+.|+..++..++.+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 55555566665555555543
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.08 E-value=0.49 Score=48.05 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=42.2
Q ss_pred HhCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 616 RLNCPEAAMRSLQLARQHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 616 ~~g~~~~A~~~l~~al~~~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
+..++++|+..|++++++.+... .++...-.+++.+|++++-...|.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44589999999999999988654 356677788999999999999999887
No 308
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.72 E-value=0.12 Score=40.96 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=43.9
Q ss_pred EEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhc
Q 002716 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSV 243 (889)
Q Consensus 184 v~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Y 243 (889)
|+|+. +|+.|.+.+.+. ..|..++.||.+.-.++. .|.|+ +|+..+|+.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHH
Confidence 56665 899999999875 699999999986433333 79999 599999999999986
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.58 E-value=0.052 Score=36.44 Aligned_cols=31 Identities=13% Similarity=0.107 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
+++.+|.++...|++++|+..|++.++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555544443
No 310
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.44 E-value=0.28 Score=42.19 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhccc
Q 002716 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALED 527 (889)
Q Consensus 463 ~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---~~~~l~~~a~~~~~~g~ 527 (889)
..+..++++++.+|++..+.+.+|..++..|++++|++.+-.+++.++ +..+...+-.++-..|.
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 346778899999999999999999999999999999999999999887 33444444444444444
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.42 E-value=1.9 Score=44.02 Aligned_cols=50 Identities=16% Similarity=0.310 Sum_probs=36.9
Q ss_pred hccCHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 491 TKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 491 ~~g~~~~Al~~l~kal~~~p-----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
...+.++|+..|++++++.+ ...++-....+++.+|+|++-...|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34477888888888888777 234555667788888888888888888775
No 312
>PRK10941 hypothetical protein; Provisional
Probab=94.32 E-value=0.21 Score=52.47 Aligned_cols=77 Identities=16% Similarity=0.092 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhhc
Q 002716 810 PYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL-LHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVYS 886 (889)
Q Consensus 810 ~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~-l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~~ 886 (889)
...++-.+|.+.++++.|+...+..+.+.|+... +.-+|.+|.++|.+..|..+++..++..|+++++.-+-.++.+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3456777899999999999999999999999744 4479999999999999999999999999999988766665543
No 313
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.31 E-value=0.48 Score=43.16 Aligned_cols=78 Identities=23% Similarity=0.189 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhCCC---HHHHHHHHHHHHh-cCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHH
Q 002716 808 VYPYRYRAAVLMDSHK---ENEAIAELSRAIA-FKADL--HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELH 881 (889)
Q Consensus 808 ~~~~~~la~~~~~~g~---~~eA~~~l~kal~-~~p~~--~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~ 881 (889)
....+++|+++....+ ..+.+..++..++ -.|+. +.++.++.-+.++|+|++++++....++.+|+|+++.++-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4567788998887654 5678899999996 55553 6777888888888999999999999999999999999887
Q ss_pred Hhhh
Q 002716 882 SRVY 885 (889)
Q Consensus 882 ~~~~ 885 (889)
..+.
T Consensus 112 ~~ie 115 (149)
T KOG3364|consen 112 ETIE 115 (149)
T ss_pred HHHH
Confidence 6654
No 314
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=94.30 E-value=0.13 Score=50.20 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=75.9
Q ss_pred ccccEEEEeCCeEEEehHHHHhhcCh--hhhhhhcCC---CCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHH
Q 002716 180 VLRNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (889)
Q Consensus 180 ~~~Dv~~~v~~~~~~~hr~vLaa~s~--~F~~mf~~~---~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~ 254 (889)
..+=|.+.++|+.|.--+--|..+-| -.-+||.+. -.|+++.-+-|. -+|.-|+.+++|+..|.++..+.-+
T Consensus 7 ~~~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~ 83 (302)
T KOG1665|consen 7 LSSMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDID 83 (302)
T ss_pred hhhhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCcc
Confidence 34567888999999888777777765 567888762 245556666666 7999999999999999999666678
Q ss_pred HHHHHHHHHHHcHHHHHHHHHH
Q 002716 255 LLEILIFANKFCCERLKDACDR 276 (889)
Q Consensus 255 ~~~ll~~A~~~~~~~l~~~~~~ 276 (889)
+.++|..|++|.+-.|++.++.
T Consensus 84 ~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 84 CLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHHhhHHhhHhHHhHHhh
Confidence 9999999999998888888876
No 315
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.26 E-value=19 Score=44.70 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=79.9
Q ss_pred chhHHHHHhhcCChhHHHHHHHHhhhcCCCChh---hHHHHHHHHHhc-------cCHHHHHHHHHHHHcCCCCHHHHHH
Q 002716 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSY---PYMYRASSLMTK-------QNVEAALAEINRILGFKLALECLEL 517 (889)
Q Consensus 448 ~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~---a~~~la~~~~~~-------g~~~~Al~~l~kal~~~p~~~~l~~ 517 (889)
...++...++| +.|+..|.+.....|...+ +.+..|..+..+ ..+++|+..|++.-.--..+--|..
T Consensus 481 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (932)
T PRK13184 481 VPDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLG 557 (932)
T ss_pred CcHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHh
Confidence 45678888999 9999999999999998765 445566666532 2688999999987654446777888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcc
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 547 (889)
.|.+|..+|+|++-++.|.-+++..|+++.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 899999999999999999999999999984
No 316
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.20 E-value=1.6 Score=48.32 Aligned_cols=144 Identities=16% Similarity=0.030 Sum_probs=97.4
Q ss_pred HhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH---------cC-----CC-------------CH---HHHHHHH
Q 002716 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL---------GF-----KL-------------AL---ECLELRF 519 (889)
Q Consensus 470 ~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal---------~~-----~p-------------~~---~~l~~~a 519 (889)
..+..+|....++..++.++..+|+++.|.+.+++++ .+ ++ |. .+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3457789999999999999999999999999999885 12 11 11 2344455
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHh
Q 002716 520 CFFLALEDYQAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~ 598 (889)
......|-+..|.+..+-++.+||. ++ ..+...+-....+.++++--+... +....
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP-----~g~ll~ID~~ALrs~~y~~Li~~~------------------~~~~~ 167 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDP-----LGVLLFIDYYALRSRQYQWLIDFS------------------ESPLA 167 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCc-----chhHHHHHHHHHhcCCHHHHHHHH------------------HhHhh
Confidence 6677889999999999999999999 66 124444445555666665443333 22221
Q ss_pred cCC-----CChHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHcCCC
Q 002716 599 SDA-----PKGVLYFRQSLLLLRLNCP---------------EAAMRSLQLARQHAAS 636 (889)
Q Consensus 599 ~~p-----~~~~~~~~la~~~~~~g~~---------------~~A~~~l~~al~~~p~ 636 (889)
... .-|..-+..+.++...++. +.|...+.+|+...|.
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 100 1234556677777777776 6677777777766664
No 317
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.16 E-value=0.33 Score=41.71 Aligned_cols=74 Identities=9% Similarity=-0.089 Sum_probs=47.4
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 002716 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 589 sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~ 662 (889)
.+..+++.++.+|++..+.+.+|..+...|++++|+..+-.+++.+++. ..+...+-.++...|.-+.-...|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3566688888888888888888888888888888888888888877654 3444444444544555443333333
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.16 E-value=1.1 Score=43.97 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=84.8
Q ss_pred hhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHH
Q 002716 696 SLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEM 767 (889)
Q Consensus 696 ~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~ 767 (889)
..++.-++.++....+ ..++..+|..|...|+++.|+++|.++.+.... +.+..+.++....|++......+
T Consensus 17 ~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i 96 (177)
T PF10602_consen 17 EKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYI 96 (177)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3566666666665444 578999999999999999999999998876543 78888999999999999888888
Q ss_pred HHHHHHhccCH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Q 002716 768 TKLIKKARNNA-SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFK 838 (889)
Q Consensus 768 ~~al~~~~~~~-~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~ 838 (889)
.++-......+ |... .....+-|..++..++|.+|...|-.+..-.
T Consensus 97 ~ka~~~~~~~~d~~~~-------------------------nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 97 EKAESLIEKGGDWERR-------------------------NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHhccchHHHH-------------------------HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 87755433211 1000 0122345666777889999998887776444
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.14 E-value=0.8 Score=46.51 Aligned_cols=84 Identities=14% Similarity=0.010 Sum_probs=54.9
Q ss_pred ccCHHHHHHHHHHHH------cCCC--CHHHHHHHHHHHHhcccHH-------HHHHHHHHHHHhCCCCcchhhhHHHHH
Q 002716 492 KQNVEAALAEINRIL------GFKL--ALECLELRFCFFLALEDYQ-------AALCDVQAILTLSPDYRMFEGRVAASQ 556 (889)
Q Consensus 492 ~g~~~~Al~~l~kal------~~~p--~~~~l~~~a~~~~~~g~~~-------~A~~~~~~al~~~p~~~~~~~~~~a~~ 556 (889)
...+++|++.|.-++ +.++ .+.....+||+|...|+.+ .|...|++++................+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 344555655555443 2223 3455666789998888844 455666666655433222333446889
Q ss_pred HHHHHHHHhhchhHHHHHH
Q 002716 557 LHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~ 575 (889)
++|.++.+.|++++|.+||
T Consensus 170 LigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999
No 320
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.87 E-value=11 Score=40.28 Aligned_cols=115 Identities=16% Similarity=0.115 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhHHHhcc-cHHHHHHHHHHHHHc----Ccch-hHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHH
Q 002716 380 RQRLLAFHQLGCVRLLRK-EYDEAEHLFEAAVNA----GHIY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453 (889)
Q Consensus 380 ~~~~~a~~~lG~~~~~~g-~~~eA~~~~~~al~~----~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~ 453 (889)
...+..+|+.|...+.++ ++++|..|+++|.+. +... ....... .-+..+. .++.+|.
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e---------lr~~iL~-------~La~~~l 95 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE---------LRLSILR-------LLANAYL 95 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH---------HHHHHHH-------HHHHHHH
Confidence 344567899999999999 999999999999875 2110 0000000 0000011 1112222
Q ss_pred HHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC
Q 002716 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL 510 (889)
Q Consensus 454 ~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p 510 (889)
..+.+...++|...++.+-...|+.+..+...-.++...++.+++.+.+.+++...+
T Consensus 96 ~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 96 EWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 222221225677777777777888888776666666668889999999988887654
No 321
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=93.86 E-value=0.17 Score=53.38 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=80.1
Q ss_pred eEEEehHHHHhhcChhhhhhhcCCCCCCC-cCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHcHHH
Q 002716 191 EKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (889)
Q Consensus 191 ~~~~~hr~vLaa~s~~F~~mf~~~~~e~~-~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~~A~~~~~~~ 269 (889)
+.|.|.+-.|-..=.||+..+.....++. .+.|+|+- .-+..+|.-|+.|+....-. +++.+|..||.-++++-|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 57999999999999999999976332222 24555553 26889999999999986666 99999999999999996666
Q ss_pred HHHHHHHHH--------Hhhc--CCHHHHHHHHHHHHHcCChhhHHHHHHHH
Q 002716 270 LKDACDRKL--------ASLV--ASREDAVELMGYAIEENSPVLAVSCLQVF 311 (889)
Q Consensus 270 l~~~~~~~l--------~~~~--~~~~~~~~~~~~a~~~~~~~l~~~c~~~~ 311 (889)
|.+.|-.++ .+.+ .++.+ -.+..+|...+..+|..+-+...
T Consensus 92 Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~-~Ll~RLa~~~t~~el~~~~l~l~ 142 (317)
T PF11822_consen 92 LVEECLQYCHDHMSEIVASPCNLNCLND-NLLTRLADMFTHEELEAAFLRLK 142 (317)
T ss_pred HHHHHHHHHHHhHHHHHcCCCCcccCCH-HHHHHHHHhcCcccHhHhhhhhc
Confidence 666554443 2222 11111 12334566666666665444333
No 322
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.84 E-value=14 Score=41.73 Aligned_cols=91 Identities=18% Similarity=0.112 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHH-HHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc--
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLAR-VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-- 787 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-- 787 (889)
.+|.++-+.-.+..-.+.|...|.+|-+.... ..+..-|. -|...++..-|.+.++-.+...++.+..-.....|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 34555555555566666777777777655433 22222222 23445666666666666666666555444333332
Q ss_pred --CCHHHHHHHHHHHHhc
Q 002716 788 --CDRELTRADLEMVTQL 803 (889)
Q Consensus 788 --~~~~~A~~~l~~al~l 803 (889)
++...|...|++++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTS 464 (656)
T ss_pred HhCcchhHHHHHHHHHhc
Confidence 4445555555555443
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=2.4 Score=40.50 Aligned_cols=111 Identities=10% Similarity=-0.017 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHH
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 785 (889)
..+....|.+..+.|+...|+..|..+-.-.|. .+...-+.++...|-|+.-....+.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepL--------------- 158 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPL--------------- 158 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhc---------------
Confidence 456677778888888888888888877665543 33444455556666664332222211
Q ss_pred hcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002716 786 EYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFH 851 (889)
Q Consensus 786 ~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~ 851 (889)
+...+|-...+...||..-.+.|++.+|.+.|.....-...+.....++.+.
T Consensus 159 --------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 159 --------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred --------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 1223455566777788888888888888888888776433344444444443
No 324
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.55 E-value=5.1 Score=43.67 Aligned_cols=84 Identities=13% Similarity=-0.031 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhcc------------CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHH
Q 002716 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQ------------NVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQA 530 (889)
Q Consensus 464 A~~~~~~al~~dp~~~~a~~~la~~~~~~g------------~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~ 530 (889)
....|++.++.+|.+..+|..+...--..- -.+..+..|++|++.+| +...+..+-.......+-++
T Consensus 4 r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 4 RTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Confidence 456688999999999999998875543321 24667889999999999 77777777777778888899
Q ss_pred HHHHHHHHHHhCCCCcc
Q 002716 531 ALCDVQAILTLSPDYRM 547 (889)
Q Consensus 531 A~~~~~~al~~~p~~~~ 547 (889)
..+-+++++..+|++..
T Consensus 84 l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHHHCCCChH
Confidence 99999999999999883
No 325
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.46 E-value=0.49 Score=41.97 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=65.5
Q ss_pred HHHHHHh--hhHHHhcccHHHHHHHHHHHHHcCc--------------chhHhhHHHHHhhcCCcHHHHHHHhhhhhccC
Q 002716 383 LLAFHQL--GCVRLLRKEYDEAEHLFEAAVNAGH--------------IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT 446 (889)
Q Consensus 383 ~~a~~~l--G~~~~~~g~~~eA~~~~~~al~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 446 (889)
+.+|..| |.-.+..|-|++|...+.+|++... ...+.+|+.++...|.++.++...
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA-------- 78 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA-------- 78 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH--------
Confidence 3344444 4456788999999999999987521 124667888888888888876544
Q ss_pred cchhHHHHHhhcCChhHHHHHHHHhhhcCCCChh----hHHHHHHHHHhccCHHHHHHHHHHHH
Q 002716 447 PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY----PYMYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 447 ~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~----a~~~la~~~~~~g~~~~Al~~l~kal 506 (889)
+.|+.+|++--+++.+... +-+.+|..+-..|+.++|+..|+.+-
T Consensus 79 ---------------~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 79 ---------------DRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp ---------------HHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4444455554444444332 34577888888999999998888764
No 326
>PRK10941 hypothetical protein; Provisional
Probab=93.46 E-value=0.55 Score=49.31 Aligned_cols=76 Identities=13% Similarity=0.063 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
.+.++-.++...++++.|.... +.++...|+++.-+.-.|.+|.++|++..|...++..++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~------------------e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRAS------------------EALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHH------------------HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4556667788888888885555 8888888888888888888888888888888888888888
Q ss_pred CCCcHHHHHHHHHH
Q 002716 634 AASDHERLVYEGWI 647 (889)
Q Consensus 634 ~p~~~~~~~~lg~~ 647 (889)
.|+++.+......+
T Consensus 245 ~P~dp~a~~ik~ql 258 (269)
T PRK10941 245 CPEDPISEMIRAQI 258 (269)
T ss_pred CCCchhHHHHHHHH
Confidence 88887765544433
No 327
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.18 E-value=3.1 Score=46.01 Aligned_cols=36 Identities=14% Similarity=-0.017 Sum_probs=32.3
Q ss_pred HHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 504 RILGFKL-ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 504 kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
..++..| ..+++..++.++..+|+.+.|.+.++++|
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456789 99999999999999999999999999987
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.05 E-value=1 Score=45.72 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=65.6
Q ss_pred hCCHHHHHHHHHHHHHc----C-C--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC
Q 002716 617 LNCPEAAMRSLQLARQH----A-A--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~----~-p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~ 689 (889)
...+++|+..|..|+-. . + .-+..+..+||+|...|+.+.....+++|+.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~----------------------- 146 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE----------------------- 146 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-----------------------
Confidence 44566777776665532 1 1 1245678899999999998888877777762
Q ss_pred cchhhhhhHHHHhcchhh---hCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 690 CSSTVVSLLEDALKCPSD---RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~---~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
.+++|...-.. ........+.+|.++.+.|++++|..+|.+++....
T Consensus 147 -------~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 147 -------FYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred -------HHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 12222211111 122346788899999999999999999999987643
No 329
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.97 E-value=5.5 Score=45.60 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=25.2
Q ss_pred hHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002716 697 LLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNA 738 (889)
Q Consensus 697 ~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~a 738 (889)
.+.+|....++.+.. ..+|+..|..+....++++|.+.|.+|
T Consensus 788 ~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 788 RWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 555665555555433 456666666666666777766665544
No 330
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.91 E-value=0.11 Score=54.77 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=66.0
Q ss_pred ccEEEEe-CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 002716 182 RNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILI 260 (889)
Q Consensus 182 ~Dv~~~v-~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll~ 260 (889)
.|++|.+ +|+.|.|||..|+++|.+|..-+..-+ -...+|+-.. +-+.+|..++.|+|-+.=. +-++.-..|+.
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~~--v~~~~f~~flk~lyl~~na-~~~~qynalls 224 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAHR--VILSAFSPFLKQLYLNTNA-EWKDQYNALLS 224 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhhh--hhHhhhhHHHHHHHHhhhh-hhhhHHHHHHh
Confidence 5999988 888999999999999998765443322 2334553332 8899999999999977444 55666789999
Q ss_pred HHHHHcHHHHHHHHH
Q 002716 261 FANKFCCERLKDACD 275 (889)
Q Consensus 261 ~A~~~~~~~l~~~~~ 275 (889)
...+|-.+.|...++
T Consensus 225 i~~kF~~e~l~~~~~ 239 (516)
T KOG0511|consen 225 IEVKFSKEKLSLEIS 239 (516)
T ss_pred hhhhccHHHhHHHHh
Confidence 999997666655443
No 331
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=92.79 E-value=0.36 Score=49.92 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la 678 (889)
.+.+.-..+.|+.++|...|+.|+.+.|.+++++...|......++.-+|-.+|-+|+.++|.+ ++..+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3445556788999999999999999999999999999999999999999999999999999999 7665544
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.77 E-value=0.17 Score=35.94 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.0
Q ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHc
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~al~~ 412 (889)
+.++.+||.+|..+|++++|+.+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999874
No 333
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.76 E-value=2.5 Score=37.42 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=63.4
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHH
Q 002716 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (889)
Q Consensus 518 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al 597 (889)
++.-++..||+-+|+++.+..+...+++...+. .+..-|.++.. .+-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~---lh~~QG~if~~------------------------------lA~ 48 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWL---LHRLQGTIFYK------------------------------LAK 48 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHH---HHHHHhHHHHH------------------------------HHH
Confidence 356678888888888888888888777762110 12222333222 122
Q ss_pred hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 598 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
..+..+....+. -.+++.+.++....|..+..++.+|.-+-....|+++....++++.+
T Consensus 49 ~ten~d~k~~yL-----------l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 49 KTENPDVKFRYL-----------LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hccCchHHHHHH-----------HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 222112222222 23567777777888877777777777666666677777777777654
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=9 Score=36.79 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=84.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHH
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-----EAFFLKAYAL 681 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-----~a~~~la~~~ 681 (889)
.-+.-+...|+.++|+..|...-+..-.. .-+.+..|.+..+.|+...|+..|.++-...|.. -+...-+.++
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL 142 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH
Confidence 34445667888999999998877765443 3456788999999999999999999987655432 4455566677
Q ss_pred HHcCCCCCcchhhhhhHHHHhcchhhh-----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 682 ADSSQDSSCSSTVVSLLEDALKCPSDR-----LRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~Al~~~~~~-----~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
.+.| -+++.....+.. +....+.-.||..-.+.|++.+|.++|.+...
T Consensus 143 vD~g-----------sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNG-----------SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccc-----------cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777 444433333332 12245566778888888888888888887765
No 335
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.42 E-value=0.2 Score=32.51 Aligned_cols=31 Identities=39% Similarity=0.659 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
.++..+|.++...|++++|+.+|+++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4567788888888888888888888877665
No 336
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=92.39 E-value=0.41 Score=51.81 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=64.9
Q ss_pred EEEEeCCeEEEehHHHHhhcC--hhhhhhhcCCCCCCCcCc--eEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLaa~s--~~F~~mf~~~~~e~~~~~--i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~ll 259 (889)
|.|-|||+.|.-.+.-|+-.. .+|-++|++.|.-...+. |-|. =+|+.|..+|+|+.||.|+ ++.-....+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 668899999999999996655 589999988775333333 5555 6899999999999999999 7655555555
Q ss_pred H-HHHHHcHHHHHH
Q 002716 260 I-FANKFCCERLKD 272 (889)
Q Consensus 260 ~-~A~~~~~~~l~~ 272 (889)
. =|.+|.++-|..
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 5 788886665544
No 337
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.37 E-value=1.7 Score=41.41 Aligned_cols=106 Identities=15% Similarity=-0.022 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
++..+..+-...++.+++...+ ..+--+.|+.+.+-..-|.++...|++.+|++.|+.+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL------------------~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALL------------------DALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHH------------------HHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3444445555566666665554 5555577888888888888999999999999999988888
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 002716 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (889)
Q Consensus 634 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la 678 (889)
.|..+..--.++.+++..|+.+ =..+..+++...++..+.....
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~-Wr~~A~evle~~~d~~a~~Lv~ 117 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS-WRRYADEVLESGADPDARALVR 117 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH-HHHHHHHHHhcCCChHHHHHHH
Confidence 8888888888888888888754 2222344555554443333333
No 338
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.30 E-value=1.8 Score=38.29 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 498 ALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 498 Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
+++.+.++..+.| .+..++.+|.-+-....|+++..-.+++|.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4455555555555 444444444444444445555555555443
No 339
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.25 E-value=5.7 Score=37.90 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHc
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADS 684 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~ 684 (889)
.+.....+-...++.+.+...+....-+.|+.++....-|+++...|++.+|+..++.+..-.|.. -+.-+++.++...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 445566677788899999999999999999999999999999999999999999999988877777 5566677777666
Q ss_pred C
Q 002716 685 S 685 (889)
Q Consensus 685 ~ 685 (889)
+
T Consensus 92 ~ 92 (160)
T PF09613_consen 92 G 92 (160)
T ss_pred C
Confidence 5
No 340
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.16 E-value=39 Score=42.13 Aligned_cols=130 Identities=19% Similarity=0.099 Sum_probs=81.9
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHh-------hchhHHHHHHHhhhhcccccccchHHH
Q 002716 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI-------DNWTIADCWLQLYDRWSSVDDIGSLSV 592 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~-------~~~~~A~~~~~l~~~~~~~dd~~sl~~ 592 (889)
..+++...|+.|+..|+++-.-.|+...-+ +|...+|...... ..+++|+.-|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 542 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGY---EAQFRLGITLLEKASEQGDPRDFTQALSEF----------------- 542 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccch---HHHHHhhHHHHHHHHhcCChHHHHHHHHHH-----------------
Confidence 345566777778888887777777655222 3555555443321 1344553333
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhc
Q 002716 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----SHCEEGLRKAEESIQM 667 (889)
Q Consensus 593 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~al~~ 667 (889)
+ -+...|..|.-|...|.+|.++|++++-+++|..|++..|+.|+.-...-.+-++. .+...|....--++..
T Consensus 543 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (932)
T PRK13184 543 -S-YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWI 620 (932)
T ss_pred -H-HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 24456888888999999999999999999999999999998876543332222221 2334455555555666
Q ss_pred CCCh
Q 002716 668 KRSF 671 (889)
Q Consensus 668 ~p~~ 671 (889)
.|..
T Consensus 621 ~~~~ 624 (932)
T PRK13184 621 APEK 624 (932)
T ss_pred Cccc
Confidence 6654
No 341
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.85 E-value=1.4 Score=39.21 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=67.6
Q ss_pred HHHHHHHHH--HHHcCChHHHHHHHHHHHccCcc--------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 002716 713 QALNNLGSV--YVDCGQLDLAADCYSNALKIRHT--------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (889)
Q Consensus 713 ~~~~~Lg~~--y~~~g~~~~A~~~~~~al~~~p~--------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~ 776 (889)
.+|..|+.. ...-|-|++|..-+++|.+...+ ..+..|+..+...|+|++++....+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~---- 83 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR---- 83 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----
Confidence 344444433 45568999999999999976532 4677799999999999999887666653
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 777 NASAYEKRSEYCDRELTRADLEMVTQLDPLRV----YPYRYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 777 ~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~----~~~~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
+|++-=+++.+.. .+.+.+|..+...|+.++|+..|+++-+
T Consensus 84 -------------------YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 84 -------------------YFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -------------------HHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -------------------HHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2332223333222 2445678888899999999999988764
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.78 E-value=0.27 Score=31.86 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 002716 514 CLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 544 (889)
++..+|.++..+|++++|+..++++++.+|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666555553
No 343
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.34 E-value=14 Score=39.05 Aligned_cols=141 Identities=11% Similarity=-0.028 Sum_probs=80.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Q 002716 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (889)
Q Consensus 599 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la 678 (889)
-+.+....-+.+-....+..+..+-++....+++++|.-+.++..++.-- .--..+|.+.++++++..... +...
T Consensus 179 Cd~D~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~---yr~s 253 (556)
T KOG3807|consen 179 CDTDFLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI---YRQS 253 (556)
T ss_pred ccccccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH---HhhH
Confidence 34444445556666677777888888888888888888887777766432 234567788888877543221 1111
Q ss_pred HHHHHcCCCCCcchhhhhhHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----hHHHHHHHH
Q 002716 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARV 753 (889)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~----~a~~~La~~ 753 (889)
......+ ...+| ..++...- ...-..|+.+..+.|+..+|++.|+...+..|- ..+.+|-..
T Consensus 254 qq~qh~~-----------~~~da--~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEa 320 (556)
T KOG3807|consen 254 QQCQHQS-----------PQHEA--QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEA 320 (556)
T ss_pred HHHhhhc-----------cchhh--hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 1111111 00000 00000100 233456778888888888888888887777665 344444444
Q ss_pred HHHc
Q 002716 754 HFLK 757 (889)
Q Consensus 754 ~~~~ 757 (889)
....
T Consensus 321 lLE~ 324 (556)
T KOG3807|consen 321 LLEL 324 (556)
T ss_pred HHHH
Confidence 4443
No 344
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=91.27 E-value=0.63 Score=48.16 Aligned_cols=68 Identities=12% Similarity=-0.040 Sum_probs=62.1
Q ss_pred HHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHH
Q 002716 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (889)
Q Consensus 562 ~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~ 641 (889)
....|+.++|...| +.++.++|.++.++...|......++.-+|-.+|-+|+.++|.+.+++
T Consensus 126 ~~~~Gk~ekA~~lf------------------eHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLF------------------EHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHH------------------HHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 35678999998888 999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 002716 642 VYEGWI 647 (889)
Q Consensus 642 ~~lg~~ 647 (889)
.+.+..
T Consensus 188 vnR~RT 193 (472)
T KOG3824|consen 188 VNRART 193 (472)
T ss_pred hhhhcc
Confidence 887653
No 345
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.03 E-value=2.3 Score=41.78 Aligned_cols=94 Identities=10% Similarity=-0.023 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--CCcchhhhHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSP--DYRMFEGRVA 553 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~ 553 (889)
.++..+|..|.+.|+.++|++.|.++..... ..+.......+.+..+++........++-..-. .+..... .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n--r 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN--R 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH--H
Confidence 4678999999999999999999999887654 456667778888899999999999988876533 2332222 2
Q ss_pred HHHHHHHHHHHhhchhHHHHHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
....-|..+...++|..|-+.|
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~f 136 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHH
Confidence 3334567777789999997777
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.90 E-value=8.2 Score=43.92 Aligned_cols=127 Identities=16% Similarity=0.116 Sum_probs=77.9
Q ss_pred HHHhCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcch
Q 002716 614 LLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (889)
Q Consensus 614 ~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~ 692 (889)
....|+++++.+..+.. +.-|.- ..-...++..+.++|.++.|++.-+ +....+.++. +.|
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~-------D~~~rFeLAl---~lg------- 332 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT-------DPDHRFELAL---QLG------- 332 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS--------HHHHHHHHH---HCT-------
T ss_pred HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC-------ChHHHhHHHH---hcC-------
Confidence 34578888877776522 222322 3335566777788888888876432 2234444443 456
Q ss_pred hhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHH
Q 002716 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTK 769 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~ 769 (889)
+++.|.++..+... ...|..||.....+|+++-|..+|+++-+ +..|..+|...|+.+.=.++...
T Consensus 333 ----~L~~A~~~a~~~~~-~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 333 ----NLDIALEIAKELDD-PEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp -----HHHHHHHCCCCST-HHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHhcCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHH
Confidence 78888877766543 35899999999999999999999998853 56678888888987444444433
No 347
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=26 Score=37.41 Aligned_cols=265 Identities=14% Similarity=0.071 Sum_probs=150.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--CCCc--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCh-HH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQH--AASD--------HERLVYEGWILYDTSHCEEGLRKAEESI---QMKRSF-EA 673 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~--~p~~--------~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~p~~-~a 673 (889)
...+......++.++++..|.+.+.. .|.+ ......+|.+|.+.|+.++-.......- ..-+.. .+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kakaa 87 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAA 87 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence 44555666777788888888888874 2221 2356789999999999876555444322 111111 11
Q ss_pred HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHcc----Ccc--
Q 002716 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----RHT-- 744 (889)
Q Consensus 674 ~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~----~p~-- 744 (889)
......+-.-.. .+......+....+.+++..+.-+. ...-..+...|.+.++|.+|+......+.. +..
T Consensus 88 KlvR~Lvd~~~~-~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~l 166 (411)
T KOG1463|consen 88 KLVRSLVDMFLK-IDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKIL 166 (411)
T ss_pred HHHHHHHHHHcc-CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 111111111111 1222334444555555555444222 334567888999999999999887766542 222
Q ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----cCH--HHHHHHHhc----CCHHHHHHHHHHHHhcCC------
Q 002716 745 --RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-----NNA--SAYEKRSEY----CDRELTRADLEMVTQLDP------ 805 (889)
Q Consensus 745 --~a~~~La~~~~~~g~~~~A~~~~~~al~~~~-----~~~--~~~~~~~~~----~~~~~A~~~l~~al~l~p------ 805 (889)
+.+..=..+|+...+..+|...++.+-...- +.. .+-..-|.+ .++.-|..+|-.|++--.
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v 246 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV 246 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcH
Confidence 5666667888888999888888877644322 111 111111111 477888888888876421
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHH--HHHHhcC-CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHccCCC
Q 002716 806 LRVYPYRYRAAVLMDSHKENEAIAEL--SRAIAFK-ADLHLLHLRAAFHE--HTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 806 ~~~~~~~~la~~~~~~g~~~eA~~~l--~kal~~~-p~~~~l~l~a~~~~--~~g~~~~A~~~~~~al~l~P~ 873 (889)
.-...+.++-.+-...+..++--..+ +.+++.. |+...+...+..+. .+.+++.|+..|+.=+..||-
T Consensus 247 ~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 247 KALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 11223334433444455555543333 4445533 33445544444443 347899999999998888874
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.41 E-value=0.43 Score=33.82 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
.+++++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35666777777777777777777666654
No 349
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.26 E-value=2.1 Score=47.09 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=66.2
Q ss_pred hccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchh
Q 002716 491 TKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (889)
Q Consensus 491 ~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~ 569 (889)
..|+...|-..+..++...| .+....+++.+...+|+|+.|...+..+-..-..-. .+...+-......|+|+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~------~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD------STLRCRLRSLHGLARWR 374 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc------hHHHHHHHhhhchhhHH
Confidence 34555566666666666666 566666666666666666666665544433222111 23444444555566666
Q ss_pred HHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 002716 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (889)
Q Consensus 570 ~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 636 (889)
+|.... .-++...-+.+++..--+.....+|-+++|..+.++.+.++|.
T Consensus 375 ~a~s~a------------------~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 375 EALSTA------------------EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHH------------------HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 664333 4444444444444444444445556666666666666666553
No 350
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=10 Score=42.89 Aligned_cols=244 Identities=12% Similarity=0.047 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 496 EAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 496 ~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
+...+.+.+.....| ++-++...+..+...|+.+.|+..++..+. +... ....-.+.-++.++..+.+|..|-..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~k--Q~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMK--QVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHH--HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444455555556677 788888889999999998888888887776 2222 11113455667777788888888555
Q ss_pred HHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHH-HHHHH--------hCCHHHHHHHHHHH---HHcCCCcHHHHH
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS-LLLLR--------LNCPEAAMRSLQLA---RQHAASDHERLV 642 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la-~~~~~--------~g~~~~A~~~l~~a---l~~~p~~~~~~~ 642 (889)
+ ......+....-.|..++ -+++. .|+-+.|..+++.. +...|.+...-.
T Consensus 326 ~------------------~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~ 387 (546)
T KOG3783|consen 326 F------------------DLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK 387 (546)
T ss_pred H------------------HHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH
Confidence 5 333333333323333332 33322 23444443333322 222222111100
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh--H-HHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh-Cch-hHHHHH
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQMKRSF--E-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR-LRK-GQALNN 717 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~-a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~-~~~-~~~~~~ 717 (889)
. -..++.+.-.+. .+++.. . .++.+++++..-. . .+.......+......... ... .--+..
T Consensus 388 f---------~~RKverf~~~~-~~~~~~~la~P~~El~Y~Wngf~--~-~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL 454 (546)
T KOG3783|consen 388 F---------IVRKVERFVKRG-PLNASILLASPYYELAYFWNGFS--R-MSKNELEKMRAELENPKIDDSDDEGLKYLL 454 (546)
T ss_pred H---------HHHHHHHHhccc-cccccccccchHHHHHHHHhhcc--c-CChhhHHHHHHHHhccCCCCchHHHHHHHH
Confidence 0 001111111110 011111 1 1233333332211 1 1111111122222222221 111 445677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHccC----c-----chHHHHHHHHHHHcCC-HHHHHHHHHHHHHHh
Q 002716 718 LGSVYVDCGQLDLAADCYSNALKIR----H-----TRAHQGLARVHFLKNN-KTTAYEEMTKLIKKA 774 (889)
Q Consensus 718 Lg~~y~~~g~~~~A~~~~~~al~~~----p-----~~a~~~La~~~~~~g~-~~~A~~~~~~al~~~ 774 (889)
+|.+....|+-..|..+|...++.. . ..+++.+|.++..+|. .+++.+++.++-+..
T Consensus 455 ~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 455 KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 8999999999999999999887431 1 1789999999999998 888888888776554
No 351
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.15 E-value=11 Score=42.84 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=100.3
Q ss_pred cCChHHHHHHHHHHHccCcc--------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----c----------
Q 002716 725 CGQLDLAADCYSNALKIRHT--------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----R---------- 775 (889)
Q Consensus 725 ~g~~~~A~~~~~~al~~~p~--------------~a~~~La~~~~~~g~~~~A~~~~~~al~~~-----~---------- 775 (889)
..-|++|...|.-|....+. ..+..++.+...+|+.+-|....++++-.. |
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45567777777777655322 677888899999999988888888876332 1
Q ss_pred ------cCHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH-hCCCHHHHHHHHHHH-----H
Q 002716 776 ------NNASAYEKRSEY-------CDRELTRADLEMVTQLDPL-RVYPYRYRAAVLM-DSHKENEAIAELSRA-----I 835 (889)
Q Consensus 776 ------~~~~~~~~~~~~-------~~~~~A~~~l~~al~l~p~-~~~~~~~la~~~~-~~g~~~eA~~~l~ka-----l 835 (889)
.|-..|..+-.| |=+..|.+..+..+.++|. ++.+...+-++|. +..+|.=-|..++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 223333333332 6778999999999999998 8887777666554 344554444444433 2
Q ss_pred hcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCC
Q 002716 836 AFKADLHLLHLRAAFHEHTGD---VLGALRDCRAALSVDPN 873 (889)
Q Consensus 836 ~~~p~~~~l~l~a~~~~~~g~---~~~A~~~~~~al~l~P~ 873 (889)
..-|+...-..++.+|....+ .+.|...+.+|+...|.
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 344555444456777777544 67899999999999883
No 352
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.11 E-value=3.3 Score=47.32 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHH
Q 002716 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (889)
Q Consensus 515 l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~ 594 (889)
+...|.-.++..+|..+++.|...+..-|.+.+...-......+..+|....+.+.|.+++ +
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~------------------~ 418 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVY------------------Q 418 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH------------------H
Confidence 4455777888999999999999999888877655544567788899999999999997666 8
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 595 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
++-+.+|.++...+....+....|.-++|+.........
T Consensus 419 EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 419 EAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 888899988888888888888889999999887765543
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.01 E-value=9.2 Score=35.89 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=77.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~ 687 (889)
.....-...++++++...+....-+.|+.++....-|+++...|++.+|+..++....-.+.. -..-+++.++.-.+
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~-- 92 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG-- 92 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC--
Confidence 344445558899999999999999999999999999999999999999999999988777665 55556677766665
Q ss_pred CCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 739 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al 739 (889)
...|...+......+...+|+...+...
T Consensus 93 ------------------------Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 ------------------------DAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ------------------------ChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 1245555555555666666665554443
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.81 E-value=1.3 Score=40.42 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcc---CHHHHHHHHHHHHc-CCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 481 PYMYRASSLMTKQ---NVEAALAEINRILG-FKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 481 a~~~la~~~~~~g---~~~~Al~~l~kal~-~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
..+.+|.++.... +..+.+..++.++. -.| ..++++.++.-+++.++|++++.+.+..++.+|++.
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3456666665543 56788999999996 555 788999999999999999999999999999999998
No 355
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.47 E-value=0.72 Score=45.97 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=51.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
....+.++.+.|.+.|.+++...|.....|+.+|....+.|+++.|.+.|++.++++|++
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567888888899999999999888889999999889999999999999999998887
No 356
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=6.5 Score=44.88 Aligned_cols=93 Identities=18% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHH-HHhcCCCH-HHHHH------HHHHHHHcCCHHH
Q 002716 788 CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSR-AIAFKADL-HLLHL------RAAFHEHTGDVLG 859 (889)
Q Consensus 788 ~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~k-al~~~p~~-~~l~l------~a~~~~~~g~~~~ 859 (889)
++...+...+..++..+|.+..++.++|......|....+...+.. +....|++ ..+.. .+.+...+|+..+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE 160 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHH
Confidence 5556777778888888888888888888888877777777766665 67777775 22222 4667777788888
Q ss_pred HHHHHHHHHccCCCCHHHHHH
Q 002716 860 ALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 860 A~~~~~~al~l~P~~~~~l~l 880 (889)
+....+++.++.|.++.++..
T Consensus 161 ~~~~l~~~~d~~p~~~~~~~~ 181 (620)
T COG3914 161 AELALERAVDLLPKYPRVLGA 181 (620)
T ss_pred HHHHHHHHHHhhhhhhhhHhH
Confidence 888999999999888777644
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.12 E-value=13 Score=42.44 Aligned_cols=27 Identities=19% Similarity=-0.059 Sum_probs=14.3
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
++..|..+|...+.+|+++-|..+|++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555555555555555555555544
No 358
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.08 E-value=29 Score=38.21 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=88.6
Q ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH
Q 002716 494 NVEAALAEINRILGFKL-ALECLELRFCFFLALE--DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (889)
Q Consensus 494 ~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~ 570 (889)
..++-+.....++..+| ...+++.+.++..+.+ ++..-++.++++++.||.+. .++...-.+.......
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf------h~W~YRRfV~~~~~~~-- 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF------HAWHYRRFVVEQAERS-- 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc------cchHHHHHHHHHHhcc--
Confidence 45666777788888888 7778888888877655 46778888899999998887 5555554444433321
Q ss_pred HHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH------hCC------HHHHHHHHHHHHHcCCCcH
Q 002716 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LNC------PEAAMRSLQLARQHAASDH 638 (889)
Q Consensus 571 A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~------~g~------~~~A~~~l~~al~~~p~~~ 638 (889)
..++.+.+....+++..++.+-.+|.....++.. .|+ ...-+.....|+-.+|++.
T Consensus 162 ------------~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 162 ------------RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred ------------cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 0011222444478888888888888877766652 231 1233444556677788888
Q ss_pred HHHHHHHHHHHh
Q 002716 639 ERLVYEGWILYD 650 (889)
Q Consensus 639 ~~~~~lg~~~~~ 650 (889)
.+|++.-+.+.+
T Consensus 230 S~WfY~rWLl~~ 241 (421)
T KOG0529|consen 230 SCWFYHRWLLGR 241 (421)
T ss_pred ceeeehHHhhcc
Confidence 877775555443
No 359
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=88.05 E-value=28 Score=36.90 Aligned_cols=128 Identities=14% Similarity=0.060 Sum_probs=75.7
Q ss_pred hcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 002716 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (889)
Q Consensus 580 ~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~ 659 (889)
.|..-+...-+....++++++|+-+.++..++.- +.--..+|.+.++++++.... -++........|...+|..
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccchhhhh
Confidence 4555555556777789999999988888877653 233466788888888875432 2233333333333333321
Q ss_pred HHHHHHhcCCCh--HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch------hHHHHHHHHHHHHcCChHH
Q 002716 660 KAEESIQMKRSF--EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK------GQALNNLGSVYVDCGQLDL 730 (889)
Q Consensus 660 ~~~~al~~~p~~--~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~------~~~~~~Lg~~y~~~g~~~~ 730 (889)
+.+-+- -....++.+-..+| ++.+|.+.+.+..+. ..+.-||-.......-|.+
T Consensus 268 ------rRDtnvl~YIKRRLAMCARklG-----------rlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 268 ------RRDTNVLVYIKRRLAMCARKLG-----------RLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred ------hcccchhhHHHHHHHHHHHHhh-----------hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 23345788888888 999999998887433 2334444444444444433
No 360
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.96 E-value=0.82 Score=45.58 Aligned_cols=59 Identities=19% Similarity=0.117 Sum_probs=49.4
Q ss_pred HHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 488 SLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
...+.++.+.|.+.|++++...| ....++..|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34567888888888888888888 777888888888888888888888888888888776
No 361
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.93 E-value=69 Score=38.50 Aligned_cols=122 Identities=7% Similarity=-0.073 Sum_probs=67.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~ 561 (889)
.+..|.-..+.|++..+.....+ +.-.|- ..+.....+....++. ....+...++..|+.+ .+..+....
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL-~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P------~~~~Lr~~~ 105 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPT-LKDYPL-YPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLP------PARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-ccCCCc-HhHHHHHHHHhccccC--CHHHHHHHHHHCCCCc------hHHHHHHHH
Confidence 44556667788888887666554 333442 1111111111222211 2225666777888877 333333332
Q ss_pred HHH---hhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 562 REH---IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 562 ~~~---~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
... .++|..-. +.....|.+....+..+......|+.++|....+++.....
T Consensus 106 l~~La~~~~w~~~~----------------------~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 106 VNELARREDWRGLL----------------------AFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHHHccCHHHHH----------------------HhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 222 33444332 21223477788888888888999998888777777655443
No 362
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=2.9 Score=40.04 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCC--------------------
Q 002716 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (889)
Q Consensus 189 ~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~-------------------- 248 (889)
+|+.|.+-+.+. ..|..+.+++...=-......|.|+ +|+..+|..+++|++.-+-+
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 788999988874 7899988888642211222578888 59999999999999873321
Q ss_pred ----CCCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 002716 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 249 ----~~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
.++.+++.+|+.+|+.+-+..|.+.|.+.++.++
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 0234578888888888888888888877777666
No 363
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.17 E-value=22 Score=40.94 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=10.8
Q ss_pred HHhcCCcccchhhHHHHHHH
Q 002716 74 ELELCPLQERSSLYLLQFQV 93 (889)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~ 93 (889)
.|-+|+-.|-..-=-+|-.|
T Consensus 107 ~LasCsLsdFglWS~~qK~V 126 (1081)
T KOG1538|consen 107 QLASCSLSDFGLWSPEQKSV 126 (1081)
T ss_pred HhhhcchhhccccChhhhhH
Confidence 46788876643333344443
No 364
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=23 Score=40.60 Aligned_cols=131 Identities=14% Similarity=-0.109 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCC-CHHHHHH--HHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHH
Q 002716 496 EAALAEINRILGFKL-ALECLEL--RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIAD 572 (889)
Q Consensus 496 ~~Al~~l~kal~~~p-~~~~l~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~ 572 (889)
.-|+..+...+.+++ ++..+.. +...+...++...+.-.....+..+|++. .+...|+......|....+.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC------PAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc------hHHHHHHHHHHHhhhHHHHH
Confidence 335555555555666 4444322 35556667788788888888888888888 67777777766666555542
Q ss_pred HHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHH------HHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Q 002716 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ------SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (889)
Q Consensus 573 ~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~ 646 (889)
.-+ .+-+....|.+......+ +.....+|+..++...++++.+..|.++.+...+..
T Consensus 122 ~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 122 ADI-----------------SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred HHH-----------------HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 222 133666667766655444 778888888899999999999988888766555544
Q ss_pred HHH
Q 002716 647 ILY 649 (889)
Q Consensus 647 ~~~ 649 (889)
...
T Consensus 185 ~r~ 187 (620)
T COG3914 185 ARQ 187 (620)
T ss_pred HHH
Confidence 433
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.14 E-value=22 Score=35.38 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred hccCHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-----CHHHHHHH
Q 002716 774 ARNNASAYEKRSEYCDRELTRADLEMVTQL-DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKA-----DLHLLHLR 847 (889)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~A~~~l~~al~l-~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p-----~~~~l~l~ 847 (889)
.++-..+|+....+|+ ++|...|-++-.. .-+++...+.+|..|. ..+.++|+..+.+++++.+ +++++..+
T Consensus 107 S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 107 SQDPYLLYYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred CCCccHHHHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 3333445566666555 4555555544332 2356778888887776 5678999999999997643 35777788
Q ss_pred HHHHHHcCCHHHHH
Q 002716 848 AAFHEHTGDVLGAL 861 (889)
Q Consensus 848 a~~~~~~g~~~~A~ 861 (889)
+.++.++|+++.|-
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 88888889999884
No 366
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.99 E-value=21 Score=37.48 Aligned_cols=109 Identities=17% Similarity=0.035 Sum_probs=51.9
Q ss_pred hcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhc
Q 002716 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL 474 (889)
Q Consensus 395 ~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~ 474 (889)
.+++|++|++.+.... ......|+...|-+...-+++.+...+. ...++.+..+-+.+..
T Consensus 2 ~~kky~eAidLL~~Ga------------~~ll~~~Q~~sg~DL~~lliev~~~~~~--------~~~~~~~~rl~~l~~~ 61 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA------------LILLKHGQYGSGADLALLLIEVYEKSED--------PVDEESIARLIELISL 61 (260)
T ss_dssp HTT-HHHHHHHHHHHH------------HHHHHTT-HHHHHHHHHHHHHHHHHTT-----------SHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHh
Confidence 5788999999887663 3344445555555444444433221110 0113333444444443
Q ss_pred CC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHH
Q 002716 475 DP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDV 535 (889)
Q Consensus 475 dp-~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~ 535 (889)
-| +.++ +..=...|++.- + ..-.| +++.+...|..+.+.|++.+|...+
T Consensus 62 ~~~~~p~----------r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 62 FPPEEPE----------RKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp S-TT-TT----------HHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCCcch----------HHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33 2222 111123344443 1 12233 7778888888888888887777665
No 367
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.96 E-value=6.7 Score=36.78 Aligned_cols=62 Identities=15% Similarity=-0.010 Sum_probs=55.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHH
Q 002716 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCE 655 (889)
Q Consensus 594 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~ 655 (889)
..+--+.|+.+.+-.--|.++...|++.+|++.|+...+..+..+...-.++.+++.+|+.+
T Consensus 34 dALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 34 DALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 55555789999999999999999999999999999999998888888888999999998864
No 368
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=86.84 E-value=0.52 Score=48.33 Aligned_cols=85 Identities=9% Similarity=0.181 Sum_probs=64.1
Q ss_pred cEEEEeCCeEEEehHHHHhhcCh-hhhhhhcCCCC---CCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCH-HHHHH
Q 002716 183 NVVFRIHEEKIECDRQKFAALSA-PFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP-NLLLE 257 (889)
Q Consensus 183 Dv~~~v~~~~~~~hr~vLaa~s~-~F~~mf~~~~~---e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~-~~~~~ 257 (889)
-++..|++..|-..+.+|.+.-. -.-.||.+++. -.+..+.++-| ||+..+|+++|+|.-||.+. .++ -.|-+
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iR-CP~~vSvpE 174 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMR-CPSSVSVSE 174 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCcee-CCCCCchHH
Confidence 47788889999998888854322 33567777653 22346888888 99999999999999999998 544 46778
Q ss_pred HHHHHHHHcHHH
Q 002716 258 ILIFANKFCCER 269 (889)
Q Consensus 258 ll~~A~~~~~~~ 269 (889)
|-.+.|.+|+.|
T Consensus 175 LrEACDYLlipF 186 (438)
T KOG3840|consen 175 LREACDYLLVPF 186 (438)
T ss_pred HHhhcceEEeec
Confidence 888888887665
No 369
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.32 E-value=2.2 Score=47.60 Aligned_cols=85 Identities=19% Similarity=0.092 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhc---cCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~---g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~ 537 (889)
..++..|.+++...|.....|..+|.++++. |+.-.|+.....++.++| ...+++.++.++..++.+.+|+.....
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 6789999999999999999999999998875 566778888899999999 888999999999999999999999999
Q ss_pred HHHhCCCCc
Q 002716 538 ILTLSPDYR 546 (889)
Q Consensus 538 al~~~p~~~ 546 (889)
+....|.+.
T Consensus 471 lq~~~Ptd~ 479 (758)
T KOG1310|consen 471 LQMSFPTDV 479 (758)
T ss_pred HhhcCchhh
Confidence 888888665
No 370
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=86.30 E-value=6 Score=44.19 Aligned_cols=81 Identities=11% Similarity=0.046 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHhcC
Q 002716 764 YEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK-ENEAIAELSRAIAFK 838 (889)
Q Consensus 764 ~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~-~~eA~~~l~kal~~~ 838 (889)
...|+.+....+.+..++.....| +.+.+-...|.+++..+|+++..|..-|.-.+..+. .+.|...+.+++.++
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 455666666666666655555554 235556666677777777777777666655444443 666677777777777
Q ss_pred CCHHHH
Q 002716 839 ADLHLL 844 (889)
Q Consensus 839 p~~~~l 844 (889)
|+.+.+
T Consensus 171 pdsp~L 176 (568)
T KOG2396|consen 171 PDSPKL 176 (568)
T ss_pred CCChHH
Confidence 765443
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=86.01 E-value=3.8 Score=35.49 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=44.9
Q ss_pred HHHhccCHHHHHHHHHHHHcCCC-----C-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 488 SLMTKQNVEAALAEINRILGFKL-----A-----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 488 ~~~~~g~~~~Al~~l~kal~~~p-----~-----~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
...+.|+|.+|++.+.+...... . ..++..+|.++...|++++|+..+++++++.....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 34678899999888887775543 1 24556678889999999999999999998765544
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.97 E-value=21 Score=35.53 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHH
Q 002716 496 EAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (889)
Q Consensus 496 ~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~ 573 (889)
++|...|-++-+... +++..+.+|..|. ..|.++|+..+.++|++.+....+.. +.+..|+.++...|+++.|--
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~--eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNP--EILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHhcchhhhhh
Confidence 556666666544333 6666677666655 67778888888888877655432333 667778888888888887765
Q ss_pred H
Q 002716 574 W 574 (889)
Q Consensus 574 ~ 574 (889)
|
T Consensus 200 w 200 (203)
T PF11207_consen 200 W 200 (203)
T ss_pred h
Confidence 5
No 373
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=85.44 E-value=2.2 Score=47.62 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=71.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 485 RASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLAL---EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 485 la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
-|.--+..+.+..|+..|.++++..| ...++..++.++.+. |+--.|+.+...+++++|... .+++.|+.
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~------kah~~la~ 453 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ------KAHFRLAR 453 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH------HHHHHHHH
Confidence 34444455678889999999999999 888888888888765 567789999999999999998 89999999
Q ss_pred HHHHhhchhHHHHHH
Q 002716 561 VREHIDNWTIADCWL 575 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~ 575 (889)
+...++++.+|+...
T Consensus 454 aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 454 ALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHhhHHHhhhhH
Confidence 999999999996665
No 374
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.33 E-value=13 Score=40.53 Aligned_cols=86 Identities=14% Similarity=0.012 Sum_probs=40.6
Q ss_pred HHhccCHHHHHHHHHHHHcCC----C------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH
Q 002716 489 LMTKQNVEAALAEINRILGFK----L------ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (889)
Q Consensus 489 ~~~~g~~~~Al~~l~kal~~~----p------~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~l 558 (889)
++.++++.+|.+.-+..+..- . ....++.....|...|+...-...+...++...--....++....+++
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 345688888887766554321 1 122333344444555555444444444443322111222222334444
Q ss_pred HHHHHHhhchhHHHHH
Q 002716 559 MLVREHIDNWTIADCW 574 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~ 574 (889)
-..|...+.|+.|...
T Consensus 216 Lr~yL~n~lydqa~~l 231 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKL 231 (493)
T ss_pred HHHHhhhHHHHHHHHH
Confidence 5555555666666333
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=51 Score=34.39 Aligned_cols=264 Identities=13% Similarity=0.013 Sum_probs=139.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--HHHHHH
Q 002716 608 FRQSLLLLRLNCPEAAMRSLQLARQHAAS--------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFLK 677 (889)
Q Consensus 608 ~~la~~~~~~g~~~~A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~--~a~~~l 677 (889)
..+|.-....+++++|+..|.+.+..... ...+...++.+|...|++..--+.....-..-.++ .-....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677778889999999999999876322 23456789999999998765433332222111111 000011
Q ss_pred HHHHHH-cCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHcc----C--cc--h
Q 002716 678 AYALAD-SSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKI----R--HT--R 745 (889)
Q Consensus 678 a~~~~~-~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~----~--p~--~ 745 (889)
...+.+ -...+.+....+......+++..+-.+. ...-..+...+.+.|+|.+|+......+.. + +. .
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 111111 1112223333333444444433332221 334456788899999999999887766532 2 22 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----ccCHH--HHHHHHhc----CCHHHHHHHHHHHHhcCC---CChHH-
Q 002716 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKA-----RNNAS--AYEKRSEY----CDRELTRADLEMVTQLDP---LRVYP- 810 (889)
Q Consensus 746 a~~~La~~~~~~g~~~~A~~~~~~al~~~-----~~~~~--~~~~~~~~----~~~~~A~~~l~~al~l~p---~~~~~- 810 (889)
.+..-..+|....+..++...++.+-... |+... +-..-|.+ .++.-|-.+|-.+++--. .+..+
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 67777888888888888887777664433 21111 11111222 377788888888876321 22222
Q ss_pred ----HHHHHHHHHhCCCHHHHHHHH--HHHHhcCCCH--HHHHHHHHHH--HHcCCHHHHHHHHHHHHccCCC
Q 002716 811 ----YRYRAAVLMDSHKENEAIAEL--SRAIAFKADL--HLLHLRAAFH--EHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 811 ----~~~la~~~~~~g~~~eA~~~l--~kal~~~p~~--~~l~l~a~~~--~~~g~~~~A~~~~~~al~l~P~ 873 (889)
|..+..+.. +..++--..+ +..++...+- ..+...+..+ ..+.++..|++.|..-+..||-
T Consensus 247 ~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 247 VSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 222333332 2333322222 1122211111 1121222222 2246888888888887777654
No 376
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.25 E-value=4.4 Score=35.10 Aligned_cols=59 Identities=24% Similarity=0.132 Sum_probs=46.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAAS---------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~---------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
...+.|++.+|++.+.+..+.... ...++.++|.++...|++++|+..+++++++....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999888887765332 13567889999999999999999999999875444
No 377
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.76 E-value=0.86 Score=28.83 Aligned_cols=23 Identities=35% Similarity=0.312 Sum_probs=20.2
Q ss_pred HHHHhhhHHHhcccHHHHHHHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFE 407 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~ 407 (889)
+.+.+|.+++.+|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998875
No 378
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.64 E-value=1e+02 Score=37.18 Aligned_cols=139 Identities=12% Similarity=-0.007 Sum_probs=85.1
Q ss_pred HHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCH---HHH-H
Q 002716 721 VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDR---ELT-R 794 (889)
Q Consensus 721 ~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~~A-~ 794 (889)
+....++++.+..++...-..... ...+.+|+.+...|+.++|...|+++.. .. .-.-.......|.. ... .
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~~-~fYG~LAa~~Lg~~~~~~~~~~ 398 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-QR-GFYPMVAAQRLGEEYPLKIDKA 398 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-CC-CcHHHHHHHHcCCCCCCCCCCC
Confidence 444677888777777664222112 7888899998889999999999999744 22 21111111112211 000 0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 795 ADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAA 867 (889)
Q Consensus 795 ~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~a 867 (889)
..-...+.. ..-...+..+...|+...|...+..++.. .+.......+.+....|.++.|+....++
T Consensus 399 ~~~~~~~~~-----~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 399 PKPDSALTQ-----GPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred Cchhhhhcc-----ChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000011111 13455777888999999999999888875 45555556666777778888888776554
No 379
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.38 E-value=6.7 Score=35.13 Aligned_cols=95 Identities=23% Similarity=0.217 Sum_probs=62.7
Q ss_pred cEEEE-eCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCC--C----------
Q 002716 183 NVVFR-IHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN--G---------- 249 (889)
Q Consensus 183 Dv~~~-v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~--~---------- 249 (889)
-|.+. ++|+.|...+.+ |-+|-..+.|+... .+.+ -.|.++ +|...+|+.+++|+-..+-+ .
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n-~p~p~p--nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDS-TACN-YPIPAP--NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccC-CCCccc--chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 34454 488999998876 78999899888542 2222 223344 59999999999998543222 0
Q ss_pred ------------CCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 002716 250 ------------VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 250 ------------~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
++.+++.++.-+|+.+-...|-+.|...++..+
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemi 122 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMI 122 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 223456677777777777777776666666555
No 380
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.22 E-value=8.7 Score=48.02 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=109.4
Q ss_pred hHHHHHHHHHhccCHHHHHH------HHHHHHc-CCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc--chhh
Q 002716 481 PYMYRASSLMTKQNVEAALA------EINRILG-FKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR--MFEG 550 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~------~l~kal~-~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 550 (889)
-....|..-..+|.+.+|.+ .++...+ ..| ...++..++.++...|++++|+..-.++.-+...-. ....
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34566777778888888877 4443322 344 778899999999999999999998877754321100 0111
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc--------CCCChHHHHHHHHHHHHhCCHHH
Q 002716 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--------DAPKGVLYFRQSLLLLRLNCPEA 622 (889)
Q Consensus 551 ~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~ 622 (889)
....+-.++......++...|...+ .++... .|.-.....+++.++...++++.
T Consensus 1014 t~~~y~nlal~~f~~~~~~~al~~~------------------~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~ 1075 (1236)
T KOG1839|consen 1014 TKLAYGNLALYEFAVKNLSGALKSL------------------NRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADT 1075 (1236)
T ss_pred HHHHhhHHHHHHHhccCccchhhhH------------------HHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHH
Confidence 1246666777777777777775555 444332 35555666788999999999999
Q ss_pred HHHHHHHHHHcCCC--------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 623 AMRSLQLARQHAAS--------DHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 623 A~~~l~~al~~~p~--------~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
|+++++.|.+.+.. ....+..++......+++..|+...+...
T Consensus 1076 al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1076 ALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred HHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 99999999875422 22344455555555666665555554443
No 381
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.17 E-value=77 Score=35.49 Aligned_cols=118 Identities=11% Similarity=0.024 Sum_probs=86.6
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..|-..+..++...|.++.--...+.+....|.|+.|.+.+.-+-+.-. ...+...+-.-.+.+|++++|...-.-.+.
T Consensus 306 ~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 306 IAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 4555666778888899998888899999999999999998876655444 445555566777889999999999888887
Q ss_pred hCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~ 603 (889)
-.-+.+ +.....+......|-++++.-+. ++.+.++|..
T Consensus 386 ~eie~~------ei~~iaa~sa~~l~~~d~~~~~w------------------k~~~~~~~~~ 424 (831)
T PRK15180 386 NEIEDE------EVLTVAAGSADALQLFDKSYHYW------------------KRVLLLNPET 424 (831)
T ss_pred cccCCh------hheeeecccHHHHhHHHHHHHHH------------------HHHhccCChh
Confidence 655555 33333445566778888885555 7777777643
No 382
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.98 E-value=33 Score=39.73 Aligned_cols=91 Identities=10% Similarity=0.003 Sum_probs=75.3
Q ss_pred HHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK------GVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 559 g~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+.-..+.++|..+.+|| ...+.-.|.+ ......++.+|+.+.+.+.|.++++.|-+
T Consensus 361 A~~~F~~~~Y~~s~~~y------------------~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFY------------------KLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred hHHHHHHHHHHHHHHHH------------------HHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 45567788899998888 5555544433 34566889999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 633 ~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
.+|.++-.....-.+....|.-++|+.........
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999998888888889999999999998877654
No 383
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=83.60 E-value=5.8 Score=41.19 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
..++-..+...++++.|.... ++.+..+|.++.-+.-.|.+|.++|.+.-|+..++..+++.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~------------------~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 184 LRNLKAALLRELQWELALRVA------------------ERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHH------------------HHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 445556777888888886666 88999999999888889999999999999999999999999
Q ss_pred CCcHHHHHHHHH
Q 002716 635 ASDHERLVYEGW 646 (889)
Q Consensus 635 p~~~~~~~~lg~ 646 (889)
|+++.+....+.
T Consensus 246 P~~~~a~~ir~~ 257 (269)
T COG2912 246 PDDPIAEMIRAQ 257 (269)
T ss_pred CCchHHHHHHHH
Confidence 988776554443
No 384
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=83.19 E-value=8.8 Score=47.99 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=81.7
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 668 (889)
-.+.|..+..+..++.++.+.|+.++|+..-.++.-+ .|+....+.+++...+..++...|+..+.++..+.
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 3445566666666666666666666666665444322 23333444455544444444444444444433110
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc----
Q 002716 669 RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---- 744 (889)
Q Consensus 669 p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---- 744 (889)
-+..-+..+..+....+++.++...++++.|+.+.+.|++.+..
T Consensus 1046 --------------------------------~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1046 --------------------------------LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred --------------------------------ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 00011111233556678888888889999999999999886533
Q ss_pred ------hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 002716 745 ------RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (889)
Q Consensus 745 ------~a~~~La~~~~~~g~~~~A~~~~~~al~~ 773 (889)
..+..+++++...|++..|+...+.....
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 44555666666666666666555544433
No 385
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=82.90 E-value=72 Score=34.24 Aligned_cols=245 Identities=16% Similarity=0.138 Sum_probs=140.7
Q ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHcCcchhHhhHHHHHhhcCCcHHHHHHHhhhhhccC----c----------
Q 002716 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT----P---------- 447 (889)
Q Consensus 382 ~~~a~~~lG~~~~~~g~~~eA~~~~~~al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~---------- 447 (889)
+-.+...+|..+...|++++=....+..-. .....+-|+ +-+....+++... .
T Consensus 47 kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp---f~~~v~Kak----------aaKlvR~Lvd~~~~~~~~~~~~i~l~~~ 113 (411)
T KOG1463|consen 47 KEQSILELGDLLAKEGDAEELRDLITSLRP---FLSSVSKAK----------AAKLVRSLVDMFLKIDDGTGDQIELCTE 113 (411)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHH---HHHHhhhHH----------HHHHHHHHHHHHccCCCCcchHHHHHHH
Confidence 345667899999999999987776655422 122222222 1222222222211 1
Q ss_pred -chhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHc----CCC---CHHHHHHHH
Q 002716 448 -LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG----FKL---ALECLELRF 519 (889)
Q Consensus 448 -~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~----~~p---~~~~l~~~a 519 (889)
.+|+-.+. -..+.+.++ ..+..+|+..++|.+|+...+..+. .+. -.+.+.+-.
T Consensus 114 cIeWA~~ek---------RtFLRq~Le---------arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llES 175 (411)
T KOG1463|consen 114 CIEWAKREK---------RTFLRQSLE---------ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLES 175 (411)
T ss_pred HHHHHHHHh---------HHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhh
Confidence 12332222 222444433 3578899999999999998877653 222 345566678
Q ss_pred HHHHhcccHHHHHHHHHHHHHhC-CCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH-Hhhhhccccccc-chHHHHHHH
Q 002716 520 CFFLALEDYQAALCDVQAILTLS-PDYRMFEGRVAASQLHMLVREHIDNWTIADCWL-QLYDRWSSVDDI-GSLSVIYQM 596 (889)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~-~l~~~~~~~dd~-~sl~~~~~a 596 (889)
..|+...+..+|...+..+-... .-+.+...+...-..-|.++....+|..|-.+| +.|+.|.++++. .++
T Consensus 176 K~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~------ 249 (411)
T KOG1463|consen 176 KAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKAL------ 249 (411)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHH------
Confidence 88999999999998887776532 111112222223334467777778999998887 222333333221 111
Q ss_pred HhcCCCChHHHHHHHHHHHHhCCHHHHHHH--HHHHHHcCCCcHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCh
Q 002716 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRS--LQLARQHAASDHERLVYEGWILYD--TSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 597 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~--l~~al~~~p~~~~~~~~lg~~~~~--~g~~~eA~~~~~~al~~~p~~ 671 (889)
..+..+-.+-...+..++--.. -..+++....+.++....+..+.. ..+++.|+..|..=+..+|=-
T Consensus 250 --------~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~iv 320 (411)
T KOG1463|consen 250 --------TSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIV 320 (411)
T ss_pred --------HHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHH
Confidence 1122222333455666554333 345666666677777777777654 467889999888877666644
No 386
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.08 E-value=1.7 Score=30.46 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHc
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA 412 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~ 412 (889)
.++..||.+-+..++|++|++-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35778999999999999999999999875
No 387
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.02 E-value=83 Score=36.26 Aligned_cols=144 Identities=17% Similarity=0.059 Sum_probs=87.6
Q ss_pred cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHc---------CCC-------------CHH---HHHHHHHHHHhcccH
Q 002716 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILG---------FKL-------------ALE---CLELRFCFFLALEDY 528 (889)
Q Consensus 474 ~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~---------~~p-------------~~~---~l~~~a~~~~~~g~~ 528 (889)
-.|.....+..++.+...+|+.+-|...+.+++= +.| +.. +++..-......|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 3577888899999999999999999888887761 111 111 122223334567999
Q ss_pred HHHHHHHHHHHHhCCC-CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHH
Q 002716 529 QAALCDVQAILTLSPD-YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~-~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~ 607 (889)
..|.+.++-++.++|. ++. .+.+.+-....+..+|.=-+++++.++. ..-+..-|+.+. -
T Consensus 359 rTA~E~cKlllsLdp~eDPl-----~~l~~ID~~ALrareYqwiI~~~~~~e~-------------~n~l~~~PN~~y-S 419 (665)
T KOG2422|consen 359 RTALEWCKLLLSLDPSEDPL-----GILYLIDIYALRAREYQWIIELSNEPEN-------------MNKLSQLPNFGY-S 419 (665)
T ss_pred HHHHHHHHHHhhcCCcCCch-----hHHHHHHHHHHHHHhHHHHHHHHHHHHh-------------hccHhhcCCchH-H
Confidence 9999999999999998 661 1222222333344444433333311111 122333344332 2
Q ss_pred HHHHHHHHHhCC---HHHHHHHHHHHHHcCCC
Q 002716 608 FRQSLLLLRLNC---PEAAMRSLQLARQHAAS 636 (889)
Q Consensus 608 ~~la~~~~~~g~---~~~A~~~l~~al~~~p~ 636 (889)
..+|..|..... -..|...+.+|+++.|.
T Consensus 420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 420 LALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 345666666665 45677888888888885
No 388
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=80.41 E-value=2.4 Score=29.69 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 713 ~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
+++..||.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566666666667777777666666654
No 389
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.94 E-value=1.1e+02 Score=33.77 Aligned_cols=140 Identities=16% Similarity=0.017 Sum_probs=88.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhC-CCCcc--hhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHH
Q 002716 519 FCFFLALEDYQAALCDVQAILTLS-PDYRM--FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 595 (889)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~--~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~ 595 (889)
........++++|...-+..+..- -.+.. -......++.+..+|...++...-..++...-+ ..
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lr-------------tA 199 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLR-------------TA 199 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH-------------Hh
Confidence 344456788999988877766431 11111 111124566667777777775554444411111 22
Q ss_pred HHhcCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 596 MLESDA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ--HAA--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 596 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~--~~p--~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
.+..+. ....+.+.+-..|+..+.|++|-....+..- ... ..+..++++|.+..-+++|..|.+++-+|+...|.
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 233232 2334455667788888999999888776541 111 23456788999999999999999999999999997
Q ss_pred h
Q 002716 671 F 671 (889)
Q Consensus 671 ~ 671 (889)
.
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 6
No 390
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.29 E-value=2.6 Score=26.60 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 002716 640 RLVYEGWILYDTSHCEEGLRKA 661 (889)
Q Consensus 640 ~~~~lg~~~~~~g~~~eA~~~~ 661 (889)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 391
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.81 E-value=8.1 Score=40.13 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHh
Q 002716 813 YRAAVLMDSHKENEAIAELSRAIAFKADLH-LLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 883 (889)
Q Consensus 813 ~la~~~~~~g~~~eA~~~l~kal~~~p~~~-~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~ 883 (889)
++=..+...++++.|....++.+.++|+++ .+.-+|.+|.++|.+.-|+++++..++.-|+++...-+-.+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 344466666777777777777777777653 33356777777777777777777777777776665544433
No 392
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.55 E-value=6.4 Score=27.21 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH--HHHHHhcCC
Q 002716 639 ERLVYEGWILYDTSHCEEGLRK--AEESIQMKR 669 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~--~~~al~~~p 669 (889)
+.++.+|..++.+|++++|+.. |+-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4456667777777777777777 335544444
No 393
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.47 E-value=1.4e+02 Score=34.06 Aligned_cols=80 Identities=10% Similarity=-0.071 Sum_probs=43.1
Q ss_pred HHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCC
Q 002716 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALED-YQAALCDVQAILTLSPD 544 (889)
Q Consensus 467 ~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~-~~~A~~~~~~al~~~p~ 544 (889)
.|..|+...+.++..|..-.....+.+.+.+--..|.+++...| +++.+..-|.-.+..+. .+.|...+.++|+.+|+
T Consensus 93 lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 93 LYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 34555555555555555544444444445555566666666666 55555444443333332 55566666666666666
Q ss_pred Cc
Q 002716 545 YR 546 (889)
Q Consensus 545 ~~ 546 (889)
.+
T Consensus 173 sp 174 (568)
T KOG2396|consen 173 SP 174 (568)
T ss_pred Ch
Confidence 55
No 394
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.39 E-value=7.4 Score=45.32 Aligned_cols=125 Identities=13% Similarity=0.105 Sum_probs=75.8
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCh--
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILY---DTSHCEEGLRKAEESIQMKRSF-- 671 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~---~~g~~~eA~~~~~~al~~~p~~-- 671 (889)
.++.-.++-..|....+|+.-++..+..-+ -|+.- .+.+..+.++- +-|+.++|+...-.+++.....
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 455566666777788888877777665433 34211 11122233332 2477778877776666543332
Q ss_pred HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-hHHHHH
Q 002716 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGL 750 (889)
Q Consensus 672 ~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-~a~~~L 750 (889)
+.+-.-|.+|.+.- +..-|.+.+..+.|+.||++|++..|. .+-.++
T Consensus 279 Dm~Cl~GRIYKDmF--------------------------------~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~ 326 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMF--------------------------------IASNYTDAESLNHAIEWYRKAFEVEPLEYSGINL 326 (1226)
T ss_pred ceeeeechhhhhhh--------------------------------hccCCcchhhHHHHHHHHHHHhccCchhhccccH
Confidence 33333344443322 222344556778999999999999998 777788
Q ss_pred HHHHHHcCCH
Q 002716 751 ARVHFLKNNK 760 (889)
Q Consensus 751 a~~~~~~g~~ 760 (889)
|.++...|+.
T Consensus 327 atLL~aaG~~ 336 (1226)
T KOG4279|consen 327 ATLLRAAGEH 336 (1226)
T ss_pred HHHHHHhhhh
Confidence 8888888754
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.59 E-value=33 Score=28.46 Aligned_cols=54 Identities=11% Similarity=-0.014 Sum_probs=37.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 519 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
|.-++...+.++|+..++++++..++.. .+..++-.+..+|...|++.+++.+.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~---~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDRE---DRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577778888888888888777655 22345555666777788888776666
No 396
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.57 E-value=12 Score=39.53 Aligned_cols=63 Identities=8% Similarity=-0.043 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002716 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (889)
Q Consensus 604 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 666 (889)
..++..++..+...|+++.+...+++.+..+|.+...+..+-..|+..|+...|+..|++.-+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345677888999999999999999999999999999999999999999999999999998754
No 397
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.38 E-value=64 Score=33.36 Aligned_cols=63 Identities=10% Similarity=0.084 Sum_probs=47.5
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhCCC
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFF-LALEDYQAALCDVQAILTLSPD 544 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~-~~~g~~~~A~~~~~~al~~~p~ 544 (889)
+.++|.+....|+|++.+..+.+++..++ +.+-..++..+| ...|....+.+.+.........
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 56789999999999999999999999888 666666666666 3456777777777666655443
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=75.03 E-value=5.3 Score=44.37 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=52.7
Q ss_pred hhHhhHHHHHhhcCCcHHHHHHHhhhhhccCcchhHHHHHhhcCChhHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCH
Q 002716 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (889)
Q Consensus 416 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~ 495 (889)
.+..||.|++...|++..|++.++.+--.. .+.| .+.-+-....+++.|-+|+..++|
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~---------~~l~-------------~~V~~~~is~~YyvGFaylMlrRY 180 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNK---------KGLY-------------TKVPACHISTYYYVGFAYLMLRRY 180 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCccc---------chhh-------------ccCcchheehHHHHHHHHHHHHHH
Confidence 478899999999999999998776543210 0111 123345667899999999999999
Q ss_pred HHHHHHHHHHHc
Q 002716 496 EAALAEINRILG 507 (889)
Q Consensus 496 ~~Al~~l~kal~ 507 (889)
.+|+..|..++-
T Consensus 181 ~DAir~f~~iL~ 192 (404)
T PF10255_consen 181 ADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 399
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=74.37 E-value=95 Score=32.07 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc---hHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccC--HHHHHHHHhc
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHF-LKNNKTTAYEEMTKLIKKARNN--ASAYEKRSEY 787 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~---~a~~~La~~~~-~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 787 (889)
-+..++.+....|+|++.+.++++++..+++ .-...+..+|- ..|....+...+.......... .........|
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~y 82 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHH
Confidence 3567888999999999999999999999886 33344444442 2344555555555554444432 1111111111
Q ss_pred -C--------CHHHHHHHHHHHHhcCCCC-----------hHHHHHHHHHHHhC---CCHHHHHHHHHHHHh-----cCC
Q 002716 788 -C--------DRELTRADLEMVTQLDPLR-----------VYPYRYRAAVLMDS---HKENEAIAELSRAIA-----FKA 839 (889)
Q Consensus 788 -~--------~~~~A~~~l~~al~l~p~~-----------~~~~~~la~~~~~~---g~~~eA~~~l~kal~-----~~p 839 (889)
. --.+.+......+-....+ ++.|++++.+.... .-.++|...|++|++ +.|
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~ 162 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPP 162 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCC
Confidence 0 0011122222211111111 12233333332111 123678888888874 455
Q ss_pred CHHHH----HHHHHH-HHHcCCHHHHHHHHHHHHc
Q 002716 840 DLHLL----HLRAAF-HEHTGDVLGALRDCRAALS 869 (889)
Q Consensus 840 ~~~~l----~l~a~~-~~~~g~~~~A~~~~~~al~ 869 (889)
.++.. ...+.+ |..+|+.++|++..++|+.
T Consensus 163 ~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 163 THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 54222 234444 4668999999999998875
No 400
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=73.62 E-value=10 Score=37.85 Aligned_cols=66 Identities=21% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHhCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHh
Q 002716 818 LMDSHKENEAIAELSRAIAFKADLHLL-HLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSR 883 (889)
Q Consensus 818 ~~~~g~~~eA~~~l~kal~~~p~~~~l-~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~ 883 (889)
+.+.+...+|+...+.-++-+|.+... +.+..++...|++++|...++-+-++.|++....++|..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 445566666666666666666665222 244444555566666666666666666666666655543
No 401
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=73.38 E-value=5.1 Score=41.91 Aligned_cols=83 Identities=7% Similarity=-0.085 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhC
Q 002716 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLEL-RFCFFLALEDYQAALCDVQAILTLS 542 (889)
Q Consensus 465 ~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~-~a~~~~~~g~~~~A~~~~~~al~~~ 542 (889)
+-.|.+++...|+++..|..-+..-...|.|.+--..|.+++...| +.+.|.. -+.-++..++++.+...+.++++.+
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 3346677778899999998888888888999999999999999999 7776654 4555778899999999999999999
Q ss_pred CCCcc
Q 002716 543 PDYRM 547 (889)
Q Consensus 543 p~~~~ 547 (889)
|.++.
T Consensus 173 ~~~p~ 177 (435)
T COG5191 173 SRSPR 177 (435)
T ss_pred CCCch
Confidence 99983
No 402
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.37 E-value=10 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcccHHHHHHH--HHHHHHhCCC
Q 002716 514 CLELRFCFFLALEDYQAALCD--VQAILTLSPD 544 (889)
Q Consensus 514 ~l~~~a~~~~~~g~~~~A~~~--~~~al~~~p~ 544 (889)
.++..|..+..+|++++|+.. |+-+..++|.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 344556666666666666666 3355555543
No 403
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=72.76 E-value=7.6 Score=40.66 Aligned_cols=87 Identities=10% Similarity=-0.120 Sum_probs=51.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q 002716 797 LEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH--LRAAFHEHTGDVLGALRDCRAALSVDPND 874 (889)
Q Consensus 797 l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~--l~a~~~~~~g~~~~A~~~~~~al~l~P~~ 874 (889)
|.++...-|+++..|...+.-..+.|.+.+--..+.++++.+|.+..++ ..+.-+...++++.+...+.+++.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 3344445566666666666666666666666667777777777653222 12222233367777777777777777777
Q ss_pred HHHHHHHHh
Q 002716 875 QEMLELHSR 883 (889)
Q Consensus 875 ~~~l~l~~~ 883 (889)
|.+.-.|-|
T Consensus 176 p~iw~eyfr 184 (435)
T COG5191 176 PRIWIEYFR 184 (435)
T ss_pred chHHHHHHH
Confidence 666544443
No 404
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=72.40 E-value=13 Score=39.46 Aligned_cols=61 Identities=11% Similarity=-0.067 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 002716 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALAD 683 (889)
Q Consensus 623 A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~ 683 (889)
|.++|.+|....|++...++.+|.++...|+.-.|+-+|-+++-....+ .+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6788899999999999999999999988999999998888888665444 677777776666
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.05 E-value=27 Score=28.97 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=44.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 002716 717 NLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (889)
Q Consensus 717 ~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~ 774 (889)
.-|.-++...+.++|+..++++++..++ .++-.+..+|...|++.+.+++--.-++..
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556788899999999999988766 566668889999999988887766555443
No 406
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.81 E-value=13 Score=39.09 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
++..++..+...|+++.++..+++.+..+| +...+..+-..|...|+...|+..|+++-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 566778888888889999999999999999 7777777788888889999998888887653
No 407
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=71.71 E-value=1e+02 Score=30.07 Aligned_cols=118 Identities=12% Similarity=0.041 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCChHHH
Q 002716 601 APKGVLYFRQSLLLLR-LNCPEAAMRSLQLARQHAASDHERLVYEGWILY-----DTSHCEEGLRKAEESIQMKRSFEAF 674 (889)
Q Consensus 601 p~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~-----~~g~~~eA~~~~~~al~~~p~~~a~ 674 (889)
...|+....||..+.. +.++++|...|..-.+.+. .+..-+.+|..+. ..++...|++.|..+-..+.. .+-
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~-~aC 108 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIP-QAC 108 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCH-HHH
Confidence 3456677777776543 4578888888776554443 3555566665443 345788899998887753221 455
Q ss_pred HHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh--CchhHHHHHHHHHHHH
Q 002716 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR--LRKGQALNNLGSVYVD 724 (889)
Q Consensus 675 ~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~--~~~~~~~~~Lg~~y~~ 724 (889)
..++.++.+.. .++ ...-..++|++.+.++ +..+.+-++|...|..
T Consensus 109 ~~~gLl~~~g~-~~r---~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 109 RYLGLLHWNGE-KDR---KADPDSEKAERYMTRACDLEDGEACFLLSTMYMG 156 (248)
T ss_pred hhhhhhhccCc-CCc---cCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhc
Confidence 55565554422 111 1111466777777776 4446666666665543
No 408
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=70.95 E-value=18 Score=39.54 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=23.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 002716 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (889)
Q Consensus 610 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~ 660 (889)
+..+|+++++++.|+....+.+..+|.....+...|.+.....+|.+|.+.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444433
No 409
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=4.3 Score=43.41 Aligned_cols=77 Identities=21% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHHHhhh
Q 002716 809 YPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 809 ~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~~l~l~~~~~ 885 (889)
..+.+++.+-.+.+.+..|+..-..+++.+++. ..++.++..+..+.++++|+++++.+....|++..+.+.+..++
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 344456666666666666666666565544443 34445566666666777777777777777777776666655544
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=70.50 E-value=22 Score=37.01 Aligned_cols=78 Identities=14% Similarity=0.048 Sum_probs=57.1
Q ss_pred hhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc--------hHHHHHHHHHHHcCCHH
Q 002716 693 TVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--------RAHQGLARVHFLKNNKT 761 (889)
Q Consensus 693 ~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--------~a~~~La~~~~~~g~~~ 761 (889)
..++.++.|...|...-.. ......+|..|+..|++++|.+.|+.+...... ..+..+..++...|+.+
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 4455666777777665322 456678999999999999999999999655432 56667888888999987
Q ss_pred HHHHHHHHH
Q 002716 762 TAYEEMTKL 770 (889)
Q Consensus 762 ~A~~~~~~a 770 (889)
..+...-++
T Consensus 236 ~~l~~~leL 244 (247)
T PF11817_consen 236 DYLTTSLEL 244 (247)
T ss_pred HHHHHHHHH
Confidence 776655443
No 411
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=69.99 E-value=4 Score=35.74 Aligned_cols=38 Identities=13% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhhhcccccChHHHH
Q 002716 288 AVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVV 325 (889)
Q Consensus 288 ~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~~~~~~ 325 (889)
|+.++.+|..++...|...|.+++..|+.....++.|.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~ 38 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFL 38 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhh
Confidence 46788899999999999999999999987766555444
No 412
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.31 E-value=1.5e+02 Score=36.65 Aligned_cols=29 Identities=17% Similarity=0.033 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
-+..|+.+|...|+.++|++.+....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 35678899999999999999999887744
No 413
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=67.81 E-value=1.1e+02 Score=32.23 Aligned_cols=61 Identities=20% Similarity=-0.002 Sum_probs=48.3
Q ss_pred HHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHh
Q 002716 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-LALECLELRFCFFLA 524 (889)
Q Consensus 464 A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~-p~~~~l~~~a~~~~~ 524 (889)
|...|.+|+.+.|.+..+|..+|.++...|+.=.|+=.|-+++-.. |.+.+...+..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999898888654 466666666665555
No 414
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.71 E-value=9.4 Score=40.93 Aligned_cols=75 Identities=16% Similarity=0.056 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 002716 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 635 (889)
..++.+-...+.+..|...- ..+++.++....++++.+..+....++++|++.+..+....|
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~------------------~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRT------------------NEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred cchHHhcccccCCCcceecc------------------ccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 33556666677777763333 555667788888888888888888899999999988888888
Q ss_pred CcHHHHHHHHHHH
Q 002716 636 SDHERLVYEGWIL 648 (889)
Q Consensus 636 ~~~~~~~~lg~~~ 648 (889)
++......+..+-
T Consensus 341 ~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 341 NDKAIEEELENVR 353 (372)
T ss_pred chHHHHHHHHHhh
Confidence 8776655544433
No 415
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=66.31 E-value=17 Score=30.15 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhcC--CHHHHHHHHHHH
Q 002716 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELMGYA 295 (889)
Q Consensus 250 ~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~~--~~~~~~~~~~~a 295 (889)
++.+.+.+|+.+|+.+.++.|-+.|...++..+. +++....++...
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~ 58 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIE 58 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT--
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCC
Confidence 6778999999999999999999999999988884 556666665443
No 416
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=65.41 E-value=70 Score=35.30 Aligned_cols=55 Identities=15% Similarity=-0.002 Sum_probs=48.8
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 557 ~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
-+..||...++.+.|+... .+.+-.+|....-+.+.|.+...+.+|.+|.+.+--
T Consensus 233 klv~CYL~~rkpdlALnh~------------------hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHS------------------HRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHHhhhhcCCCchHHHHH------------------hhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999996666 999999999999999999999999999999887543
No 417
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.21 E-value=1.8e+02 Score=30.45 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHH----------------HHHcCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 002716 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQL----------------ARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEES 664 (889)
Q Consensus 602 ~~~~~~~~la~~~~~~g~~~~A~~~l~~----------------al~~~p~~~~~~~~lg~~-~~~~g~~~eA~~~~~~a 664 (889)
+++..+..+|..+.+.|++.+|..+|-. ..+..|.+.+.+...|.+ |...|+...|...+..-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5788899999999999999999888521 123345566666555554 55668888888766655
Q ss_pred Hhc
Q 002716 665 IQM 667 (889)
Q Consensus 665 l~~ 667 (889)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 418
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=65.01 E-value=1.5e+02 Score=33.56 Aligned_cols=164 Identities=13% Similarity=0.046 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhcccH-------HHHHHHHHHHHHhCCC---
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGFKL-------ALECLELRFCFFLALEDY-------QAALCDVQAILTLSPD--- 544 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~~p-------~~~~l~~~a~~~~~~g~~-------~~A~~~~~~al~~~p~--- 544 (889)
...+|...+..|+|+-|...|+.+.+--. -..++...|.+.+..+.. +....+++.++...-.
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~ 290 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSAL 290 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhc
Confidence 34567888888888888888877654221 122334444444443321 1223333333221111
Q ss_pred ---CcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCC---ChHHHHHHHHHH--HH
Q 002716 545 ---YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP---KGVLYFRQSLLL--LR 616 (889)
Q Consensus 545 ---~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~---~~~~~~~la~~~--~~ 616 (889)
....+ ...+..+.+.+....+.+.+|..++ +....+.+..+-. .+.++-+.|.++ ..
T Consensus 291 ~~~~~~~~-a~R~~ll~~ell~~~~~~~~a~~~~--------------~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~ 355 (414)
T PF12739_consen 291 PRCSLPYY-ALRCALLLAELLKSRGGYWEAADQL--------------IRWTSEILESDLRPFGSALLLEQAAYCYASLR 355 (414)
T ss_pred cccccccc-hHHHHHHHHHHHHhcCccHHHHHHH--------------HHHHHHHHhhhhhhHhhHHHHHHHHHhhcccc
Confidence 11001 1135556667777778877775555 3333333322222 344444555555 21
Q ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 617 ~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
.+....-..-++ ..+--+..-|.-|...|+...|+.+|.+++..
T Consensus 356 ~~~~~~~~~r~R-------K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 356 SNRPSPGLTRFR-------KYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred cCCCCccchhhH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111000000000 01122334567788899999999999998854
No 419
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=64.51 E-value=2.8e+02 Score=32.32 Aligned_cols=140 Identities=10% Similarity=-0.011 Sum_probs=102.2
Q ss_pred HHHHcCChHHHHHHHHHHHccC-----cc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc---
Q 002716 721 VYVDCGQLDLAADCYSNALKIR-----HT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY--- 787 (889)
Q Consensus 721 ~y~~~g~~~~A~~~~~~al~~~-----p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--- 787 (889)
++.........+..|+..++.- |. ..|..........|+++.....+++++--.......+.....+
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~ 343 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMES 343 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH
Confidence 3444455566666777666532 22 5566677777889999999999999987776666666655553
Q ss_pred -CCHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHcCCHHHHH
Q 002716 788 -CDRELTRADLEMVTQL-DPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHLLH--LRAAFHEHTGDVLGAL 861 (889)
Q Consensus 788 -~~~~~A~~~l~~al~l-~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~l~--l~a~~~~~~g~~~~A~ 861 (889)
|+.+-|...+.++.+. .|..+..+..-+..-...|++..|...+++..+-.|....+. -.++-+.+ |+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~-~~~~~~~ 420 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK-GNLEDAN 420 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh-cchhhhh
Confidence 8888888888888886 466677777777788888999999999999998888863333 34444444 8888887
No 420
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=63.40 E-value=14 Score=25.49 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=21.2
Q ss_pred HHHHHhh--hHHHh-----cccHHHHHHHHHHHHHcCc
Q 002716 384 LAFHQLG--CVRLL-----RKEYDEAEHLFEAAVNAGH 414 (889)
Q Consensus 384 ~a~~~lG--~~~~~-----~g~~~eA~~~~~~al~~~~ 414 (889)
.+.+.|| ..|.. ..++++|..+|++|.+.|+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 3566777 44342 2369999999999987664
No 421
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.36 E-value=2e+02 Score=30.23 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cC--CCh-HHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch----
Q 002716 643 YEGWILYDTSHCEEGLRKAEESIQ----MK--RSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---- 711 (889)
Q Consensus 643 ~lg~~~~~~g~~~eA~~~~~~al~----~~--p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---- 711 (889)
.+..++++.|.|.+|+......+. .+ ++- ..+..-..+|....+-+.+ ..-+..|........-|
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~Ks----kaSLTaArt~Ans~YCPpqlq 205 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKS----KASLTAARTLANSAYCPPQLQ 205 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhh----hhHHHHHHHHhhccCCCHHHH
Confidence 456677777777777776655442 12 222 3444444444433311110 01122222222222112
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHccCc
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p 743 (889)
++.=..-|.......+|.-|..+|-.+++-..
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 22222336667778899999999999987653
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.80 E-value=82 Score=34.72 Aligned_cols=77 Identities=34% Similarity=0.450 Sum_probs=56.3
Q ss_pred hHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 697 LLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 697 ~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
.++.-++.++...-+ ..++..+|..|...|+++.|+++|.++-+.-.. ..+.++-.+-...|+|..-..+-.
T Consensus 132 ~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~ 211 (466)
T KOG0686|consen 132 KLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYIS 211 (466)
T ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHH
Confidence 444444555554332 468889999999999999999999996554332 677888888899999977777666
Q ss_pred HHHHH
Q 002716 769 KLIKK 773 (889)
Q Consensus 769 ~al~~ 773 (889)
++...
T Consensus 212 ~A~st 216 (466)
T KOG0686|consen 212 KAEST 216 (466)
T ss_pred HHHhC
Confidence 66543
No 423
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.69 E-value=12 Score=25.17 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.9
Q ss_pred HHHHhhhHHHh----cccHHHHHHHHHHHHHcC
Q 002716 385 AFHQLGCVRLL----RKEYDEAEHLFEAAVNAG 413 (889)
Q Consensus 385 a~~~lG~~~~~----~g~~~eA~~~~~~al~~~ 413 (889)
+.+.||..|+. ..++.+|..+|++|.+.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 56778877764 358999999999998755
No 424
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.61 E-value=1.7e+02 Score=31.49 Aligned_cols=29 Identities=10% Similarity=-0.157 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 712 GQALNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 712 ~~~~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
....+.+|.-|...++++.|.--|+++..
T Consensus 125 ~~~n~YkaLNYm~~nD~~~ArVEfnRan~ 153 (449)
T COG3014 125 VLINYYKALNYMLLNDSAKARVEFNRANE 153 (449)
T ss_pred HHHHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence 34556667777777788777777777653
No 425
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=62.00 E-value=4.3e+02 Score=33.59 Aligned_cols=66 Identities=15% Similarity=-0.004 Sum_probs=33.5
Q ss_pred hHHHHhcchhhhCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHH
Q 002716 697 LLEDALKCPSDRLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMT 768 (889)
Q Consensus 697 ~~~~Al~~~~~~~~~-~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~ 768 (889)
.+.+|+..|.....+ -..|...|..+...+.+++|.-.|+.+=+... --.+|...|+|.+|+....
T Consensus 923 Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gklek------Al~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 923 LYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEK------ALKAYKECGDWREALSLAA 989 (1265)
T ss_pred cchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHH------HHHHHHHhccHHHHHHHHH
Confidence 566666666655433 34555555555666666666555554422111 1123344456665555444
No 426
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=61.63 E-value=2.9e+02 Score=31.57 Aligned_cols=59 Identities=17% Similarity=-0.026 Sum_probs=44.3
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHhcCCCh
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD--------------------TSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~eA~~~~~~al~~~p~~ 671 (889)
-|....++.+|++.+...++++..+..+.-++-.-+.. -.++.+++..|++.+..+..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 35567899999999999999999888877666555544 456778888888877665443
No 427
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.76 E-value=3.8e+02 Score=32.62 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~ 560 (889)
.+..-|..++..|++++|...|-+.++.-...... .-|.......+-..+++.+.+..-.+. .--.+|-.
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi----~kfLdaq~IknLt~YLe~L~~~gla~~------dhttlLLn 439 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI----KKFLDAQRIKNLTSYLEALHKKGLANS------DHTTLLLN 439 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH----HHhcCHHHHHHHHHHHHHHHHcccccc------hhHHHHHH
Confidence 34456788889999999999998888654311111 111233333333444555544332222 22335667
Q ss_pred HHHHhhchhHHHHHH
Q 002716 561 VREHIDNWTIADCWL 575 (889)
Q Consensus 561 ~~~~~~~~~~A~~~~ 575 (889)
+|.++++.++-.++.
T Consensus 440 cYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 440 CYIKLKDVEKLTEFI 454 (933)
T ss_pred HHHHhcchHHHHHHH
Confidence 888888877664444
No 428
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.85 E-value=16 Score=26.62 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh
Q 002716 812 RYRAAVLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 812 ~~la~~~~~~g~~~eA~~~l~kal~ 836 (889)
+.+|.+|.+.|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688888888888888888888884
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=59.70 E-value=37 Score=35.39 Aligned_cols=62 Identities=8% Similarity=-0.153 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHH
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~ 574 (889)
.....+|..|+..|++++|+..|+.+........+.......+..+..++...|+.+..+..
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34456678888888888888888888766555544433334566667777777776665443
No 430
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.61 E-value=18 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=14.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Q 002716 483 MYRASSLMTKQNVEAALAEINRIL 506 (889)
Q Consensus 483 ~~la~~~~~~g~~~~Al~~l~kal 506 (889)
+.+|..|+..|+.+.|...+++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHH
Confidence 345566666666666666666655
No 431
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.29 E-value=65 Score=35.98 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHH-hcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML-ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 554 a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
+...|..++...|+|..|++.+...+- +. .... ...+-+..+++..|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl-------~~----~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL-------NK----KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc-------cc----chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556778889999999777722111 00 1111 22345667888999999999999999999988763
No 432
>PRK12798 chemotaxis protein; Reviewed
Probab=59.21 E-value=3e+02 Score=30.83 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=96.5
Q ss_pred HcCChHHHHHHHHHHHccCcc-----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhc-------CCHH
Q 002716 724 DCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY-------CDRE 791 (889)
Q Consensus 724 ~~g~~~~A~~~~~~al~~~p~-----~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-------~~~~ 791 (889)
...+..+|+..|..+--..|. -++-.-..+....|+.+++..+-.+.+.......++.+.+..+ .+..
T Consensus 160 ~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~ 239 (421)
T PRK12798 160 VATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI 239 (421)
T ss_pred cccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc
Confidence 346677777777777777776 2333344455677888888887777777777666665555443 1111
Q ss_pred HHHHHHHHHHhc-CCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHcCCHHHHHHHH
Q 002716 792 LTRADLEMVTQL-DPL-RVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL----HLLH-LRAAFHEHTGDVLGALRDC 864 (889)
Q Consensus 792 ~A~~~l~~al~l-~p~-~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~----~~l~-l~a~~~~~~g~~~~A~~~~ 864 (889)
-...+...+.. +|. ....|..+|..-.-.|+.+-|...-++++.+.... .... ..+.......++++|++.+
T Consensus 240 -~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L 318 (421)
T PRK12798 240 -RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEEL 318 (421)
T ss_pred -cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHH
Confidence 11224444433 443 34577788888888899999999999998876442 1111 2333333446788888777
Q ss_pred HHHH--ccCCCCHHHHHH
Q 002716 865 RAAL--SVDPNDQEMLEL 880 (889)
Q Consensus 865 ~~al--~l~P~~~~~l~l 880 (889)
.+.= ++.|.|..+++.
T Consensus 319 ~~I~~~~L~~~Dr~Ll~A 336 (421)
T PRK12798 319 SQIDRDKLSERDRALLEA 336 (421)
T ss_pred hcCChhhCChhhHHHHHH
Confidence 7653 355666665543
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.67 E-value=1.8e+02 Score=32.55 Aligned_cols=60 Identities=18% Similarity=0.015 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHcC-CCCHH--HHH--HHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 482 YMYRASSLMTKQNVEAALAEINRILGF-KLALE--CLE--LRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 482 ~~~la~~~~~~g~~~~Al~~l~kal~~-~p~~~--~l~--~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
....+..++..++|..|...++.+... .++.. .+. ..|..+...-++++|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345677788999999999999998875 33333 222 2355566788899999999988765
No 434
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.08 E-value=1.3e+02 Score=30.36 Aligned_cols=60 Identities=13% Similarity=0.008 Sum_probs=54.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 002716 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (889)
Q Consensus 612 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 671 (889)
.-+++.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-.+.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 346778899999999999999999999988888899999999999999999999999988
No 435
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.79 E-value=1.7e+02 Score=30.90 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc--hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~ 772 (889)
.+...+..|...|.+.+|+++-++++..+|- ..+..|-.++...|+--.|.+.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444567788999999999999999999987 7788899999999999888888887643
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.40 E-value=74 Score=33.96 Aligned_cols=108 Identities=12% Similarity=0.115 Sum_probs=63.5
Q ss_pred hhhHHHHhcchhhhCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHccC----cc----hHHHHHHHHHHHcCCHHHH
Q 002716 695 VSLLEDALKCPSDRLRK---GQALNNLGSVYVDCGQLDLAADCYSNALKIR----HT----RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 695 ~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~----p~----~a~~~La~~~~~~g~~~~A 763 (889)
++.++++++-.++.+.. .+++.+.+..|.+.|+.+.|.+++.+..+.. .. .....+|..|....-..+.
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33566666655555333 6789999999999999999999988776543 22 3444566666655544555
Q ss_pred HHHHHHHHHHhcc-----CHHHHHHHHhc--CCHHHHHHHHHHHHh
Q 002716 764 YEEMTKLIKKARN-----NASAYEKRSEY--CDRELTRADLEMVTQ 802 (889)
Q Consensus 764 ~~~~~~al~~~~~-----~~~~~~~~~~~--~~~~~A~~~l~~al~ 802 (889)
++-...+++..-+ .-..|.+.-.. .++.+|...|-..+.
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 5555555544331 12222222111 355666666555543
No 437
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=56.06 E-value=5.9 Score=42.45 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=93.5
Q ss_pred EEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCcCceEecCCCCCHHHHHHHHHhhccCCCCCCCH--HHHHHHHHH
Q 002716 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP--NLLLEILIF 261 (889)
Q Consensus 184 v~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~--~~~~~ll~~ 261 (889)
+++......+++|+.+|...|+.|..+....-.-+....+.+. +++...+..+..|+|.+ +. -.+ .....++..
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hh-hhHHHHHHHHHHhh
Confidence 3344466789999999999999998876554211223556666 58889999999999988 55 333 244556666
Q ss_pred HHHHcHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChhhHHHHHHHHhhhccc
Q 002716 262 ANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (889)
Q Consensus 262 A~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~l~~~c~~~~~~~l~~ 317 (889)
...+-+..++.-|+..+-+.+.+..+++..+..+.-+..+.|..+|...+...+..
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~ 160 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDL 160 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 56666666777777777665557788999999999999999988887776655433
No 438
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.61 E-value=3.3e+02 Score=30.29 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 002716 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTS----HCEEGLRKAEE 663 (889)
Q Consensus 590 l~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g----~~~eA~~~~~~ 663 (889)
+.....+++.+|+.-.+|+.+..++.+.+. +..=++..+++++.+|.+-.+|.+.-.+..... ...+-+++..+
T Consensus 95 L~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~ 174 (421)
T KOG0529|consen 95 LKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTK 174 (421)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHH
Confidence 556689999999999999999999987764 577888899999999998887776655554332 34666788888
Q ss_pred HHhcCCCh-HHHHHHHHHHHH
Q 002716 664 SIQMKRSF-EAFFLKAYALAD 683 (889)
Q Consensus 664 al~~~p~~-~a~~~la~~~~~ 683 (889)
+|..++++ .+|.....++..
T Consensus 175 ~I~~nfSNYsaWhyRs~lL~~ 195 (421)
T KOG0529|consen 175 LINDNFSNYSAWHYRSLLLST 195 (421)
T ss_pred HHhccchhhhHHHHHHHHHHH
Confidence 99888888 888877766653
No 439
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.29 E-value=39 Score=35.43 Aligned_cols=60 Identities=13% Similarity=-0.056 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 606 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
.....+..|...|.+.+|+++.+++++.+|-+...+..+-.++...|+--.|++.|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345567789999999999999999999999999999999999999999888988887753
No 440
>PF12854 PPR_1: PPR repeat
Probab=54.78 E-value=28 Score=23.52 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002716 807 RVYPYRYRAAVLMDSHKENEAIAELSR 833 (889)
Q Consensus 807 ~~~~~~~la~~~~~~g~~~eA~~~l~k 833 (889)
+...|..+-..|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456777888888888888888888875
No 441
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=54.66 E-value=3.6e+02 Score=30.47 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 513 ~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
.....+|.+++-+|||+-|...|+.+.+-..++.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk 242 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK 242 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch
Confidence 3455679999999999999999999887655444
No 442
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.14 E-value=47 Score=33.03 Aligned_cols=53 Identities=19% Similarity=0.034 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q 002716 824 ENEAIAELSRAIAFKADLHLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQE 876 (889)
Q Consensus 824 ~~eA~~~l~kal~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~l~P~~~~ 876 (889)
.+..++..++.+...|++..+...+.++...|+.++|.+..+++..+.|.+.-
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~ 179 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPADEF 179 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHH
Confidence 45566677788888898888877788888889999999999999999995433
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.94 E-value=2.7e+02 Score=31.07 Aligned_cols=61 Identities=23% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHH--HHHH--HHHHHHhcCCHHHHHHHHHHHHhc
Q 002716 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE--RLVY--EGWILYDTSHCEEGLRKAEESIQM 667 (889)
Q Consensus 607 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~--lg~~~~~~g~~~eA~~~~~~al~~ 667 (889)
....+..++..++|..|.+.++.....-|.... .+.. .|.-+.+.-++.+|.+.++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 346677788999999999999999886343333 3333 455567788999999999988754
No 444
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.54 E-value=71 Score=30.02 Aligned_cols=54 Identities=24% Similarity=0.132 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~ 570 (889)
..+....++.-.+..|++.-|......++..+|++. .+..+.+.++.+.|.-.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~------~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE------EARQLKADALEQLGYQSE 122 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H------HHHHHHHHHHHHHHHH-S
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHHHhcc
Confidence 445566667778889999999999999999999999 788888888888776443
No 445
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.67 E-value=14 Score=34.28 Aligned_cols=51 Identities=14% Similarity=0.127 Sum_probs=29.4
Q ss_pred ccccccccccCCCCCCCCCCCCccCcccCC-CCcc---cc-EEEEeCCeEEE-ehHHHH
Q 002716 148 LQEFGPIDIASHLQTDINVAGSHETVSMSG-DQVL---RN-VVFRIHEEKIE-CDRQKF 200 (889)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~D-v~~~v~~~~~~-~hr~vL 200 (889)
..+.|...+.++ +.+|.+.. ++-+...+ ++++ -| |+|.|+|++|| +||+|=
T Consensus 45 ~seSPiVVVLSg-SMePaF~R-GDlLfL~N~~~~p~~vGdivVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 45 GSESPIVVVLSG-SMEPAFHR-GDLLFLTNRNEDPIRVGDIVVFKVEGREIPIVHRVIK 101 (180)
T ss_pred CCCCCEEEEEcC-CcCccccc-ccEEEEecCCCCcceeccEEEEEECCccCchhHHHHH
Confidence 344455556666 55555543 44444432 2121 35 56889999999 577763
No 446
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=50.08 E-value=4.6e+02 Score=30.29 Aligned_cols=172 Identities=13% Similarity=0.018 Sum_probs=95.2
Q ss_pred HHHHHhhhcCCCChhhHHHH-HHHHHhccCHHHHHHHHHHHH-cCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 002716 466 EDLDKATALDPTLSYPYMYR-ASSLMTKQNVEAALAEINRIL-GFKL--ALECLELRFCFFLALEDYQAALCDVQAILTL 541 (889)
Q Consensus 466 ~~~~~al~~dp~~~~a~~~l-a~~~~~~g~~~~Al~~l~kal-~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~ 541 (889)
.++.++-...++...-|..+ +.++.++|+..+|...+++.- .+++ ..+.-.+.+.+.....++..|...+.+...
T Consensus 49 ~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~- 127 (604)
T COG3107 49 FYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLP- 127 (604)
T ss_pred HHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcch-
Confidence 33445544444444444444 578899999999999999876 5556 556667789999999999999998887543
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHhhchhHHHH-HHHhhhhcccccccchHHHHHHHHh-----------cCCC--ChHHH
Q 002716 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADC-WLQLYDRWSSVDDIGSLSVIYQMLE-----------SDAP--KGVLY 607 (889)
Q Consensus 542 ~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~-~~~l~~~~~~~dd~~sl~~~~~al~-----------~~p~--~~~~~ 607 (889)
.+.........+...+.+....|+.=.|.+ .+..+.-.+..+....++..-..+. .+++ .-..|
T Consensus 128 --~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~lL~~k~~q~nid~tW~ll~~~~~~~VIn~sa~e~~~~L~GW 205 (604)
T COG3107 128 --ADLSQNQQARYYQARADALEARGDSIDAARARIAQDPLLSGKAKQANIDKTWQLLSEQANTGVINNSADEGNAALQGW 205 (604)
T ss_pred --hhcCHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhccchhHHHhHHHHHHHhhhhccccceecccCCcccccchH
Confidence 222111222333344444444444333322 2222222222222222222222222 2233 34567
Q ss_pred HHHHHHHHHhCC-HHHHHHHHHHHHHcCCCcHHH
Q 002716 608 FRQSLLLLRLNC-PEAAMRSLQLARQHAASDHER 640 (889)
Q Consensus 608 ~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~ 640 (889)
..++.+|...+. +..=....+.....+|.++.+
T Consensus 206 L~L~rv~~~~~~~p~qlk~~i~~Wq~~yPqhPaA 239 (604)
T COG3107 206 LDLARVYKDNGSDPPQLKAGIEDWQKRYPQHPAA 239 (604)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhcCCCCchh
Confidence 788888877664 334444556666667766544
No 447
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=49.33 E-value=1.6e+02 Score=34.05 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCChHHHHHHHH
Q 002716 745 RAHQGLARVHFLKN---NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQL-----DPLRVYPYRYRAA 816 (889)
Q Consensus 745 ~a~~~La~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l-----~p~~~~~~~~la~ 816 (889)
.....|-.+++..| .|--|+-.+-.+-+..|..+ ...++..|.+|+.. +..+.++|.++|.
T Consensus 258 ~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~-----------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg 326 (618)
T PF05053_consen 258 QLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPG-----------RPTPLELFNEAISSARTYYNNHHVYPYTYLGG 326 (618)
T ss_dssp HHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT-----------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCC-----------CCCHHHHHHHHHHHHHHHhcCCccccceehhh
Confidence 34445666667666 56778877777777777432 25556666666653 4567899999999
Q ss_pred HHHhCCCHHHHHHHHHHHHh
Q 002716 817 VLMDSHKENEAIAELSRAIA 836 (889)
Q Consensus 817 ~~~~~g~~~eA~~~l~kal~ 836 (889)
.+.+.+++.+|+..+.+|-.
T Consensus 327 ~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 327 YYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 448
>PF12854 PPR_1: PPR repeat
Probab=49.04 E-value=38 Score=22.85 Aligned_cols=27 Identities=4% Similarity=-0.171 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 510 LALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 510 p~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
|+.-.+..+-..|.+.|+.++|++.++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444455555555555555444
No 449
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.04 E-value=5.3e+02 Score=32.75 Aligned_cols=159 Identities=19% Similarity=0.129 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-------------------------CcHH--HHHH--HHHHHHhcCC
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-------------------------SDHE--RLVY--EGWILYDTSH 653 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-------------------------~~~~--~~~~--lg~~~~~~g~ 653 (889)
++...+.+|.+|...|...+|+.+|.+|..--. ..+. .+|+ .-.++.+-+.
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 456678899999999999999999988764211 1111 1222 2334556677
Q ss_pred HHHHHHHHHHHHhcCCCh-HH----HHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhhCch---hHHHHHHHHHHHHc
Q 002716 654 CEEGLRKAEESIQMKRSF-EA----FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK---GQALNNLGSVYVDC 725 (889)
Q Consensus 654 ~~eA~~~~~~al~~~p~~-~a----~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~---~~~~~~Lg~~y~~~ 725 (889)
.+.+++...+||+.-|+. +. +..+-.-+.+.| .+-+|.+..-+.+.. ...+..+-.+.+.+
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlg-----------h~~qAy~ai~~npdserrrdcLRqlvivLfec 1067 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLG-----------HWFQAYKAILRNPDSERRRDCLRQLVIVLFEC 1067 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchh-----------hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 788888888888755444 22 112222233344 566666555554322 55677788888888
Q ss_pred CChHH------------HHH-HHHHHHccCcc---hHHHHHHHHHHHcCCHHHHHHH-HHHHHH
Q 002716 726 GQLDL------------AAD-CYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEE-MTKLIK 772 (889)
Q Consensus 726 g~~~~------------A~~-~~~~al~~~p~---~a~~~La~~~~~~g~~~~A~~~-~~~al~ 772 (889)
|+++. -.. .++.+-...|. ..|..|=..+...+++.+|-.. |+.+..
T Consensus 1068 g~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1068 GELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred cchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 87643 223 33444444433 4455555566777887776543 444433
No 450
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.93 E-value=34 Score=22.00 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHhh
Q 002716 855 GDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 855 g~~~~A~~~~~~al~l~P~~~~~l~l~~~~ 884 (889)
|+.+.|...|++++...|.++.+.-.|.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467777888888888888777776666543
No 451
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.55 E-value=4e+02 Score=28.61 Aligned_cols=114 Identities=20% Similarity=0.126 Sum_probs=67.0
Q ss_pred hCCCCcchhhhH-HHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Q 002716 541 LSPDYRMFEGRV-AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 541 ~~p~~~~~~~~~-~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~ 619 (889)
+.|....+...+ .....|+.+|...++|..|-..+...+. |.| .++.. .......+.++|.+|+..++
T Consensus 91 iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~-----~tg-----~~~~d-~~~kl~l~iriarlyLe~~d 159 (399)
T KOG1497|consen 91 IQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPL-----DTG-----QKAYD-VEQKLLLCIRIARLYLEDDD 159 (399)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCc-----ccc-----hhhhh-hHHHHHHHHHHHHHHHhcCc
Confidence 345444333322 2455789999999999999444411100 000 00000 00123467899999999999
Q ss_pred HHHHHHHHHHHH--HcCCCcHHHHHH----HHHHHHhcCCHHHHHHHHHHHH
Q 002716 620 PEAAMRSLQLAR--QHAASDHERLVY----EGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 620 ~~~A~~~l~~al--~~~p~~~~~~~~----lg~~~~~~g~~~eA~~~~~~al 665 (889)
..+|..+..++- .....+...... .|.++-..+++-+|...|-+..
T Consensus 160 ~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 160 KVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988763 333355555443 4555566777777776666554
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.50 E-value=2.1e+02 Score=33.27 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=56.0
Q ss_pred HHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhh
Q 002716 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 694 (889)
Q Consensus 615 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~ 694 (889)
...|+++.|...+.. -| .+.....+..+..+|-.++|+ .+.++....+.++. +.|
T Consensus 597 vmrrd~~~a~~vLp~----I~--k~~rt~va~Fle~~g~~e~AL-------~~s~D~d~rFelal---~lg--------- 651 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPT----IP--KEIRTKVAHFLESQGMKEQAL-------ELSTDPDQRFELAL---KLG--------- 651 (794)
T ss_pred hhhcccccccccccc----Cc--hhhhhhHHhHhhhccchHhhh-------hcCCChhhhhhhhh---hcC---------
Confidence 345566655543322 12 223445555666666555554 44444322222222 334
Q ss_pred hhhHHHHhcchhhhCchhHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 002716 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (889)
Q Consensus 695 ~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~ 741 (889)
+++.|.+...+.-. ..-|..||.+....+++..|.++|.++.+.
T Consensus 652 --rl~iA~~la~e~~s-~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 652 --RLDIAFDLAVEANS-EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred --cHHHHHHHHHhhcc-hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 55555555444422 246788899999999999999999988654
No 453
>PF13041 PPR_2: PPR repeat family
Probab=45.76 E-value=80 Score=23.18 Aligned_cols=28 Identities=14% Similarity=-0.089 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002716 639 ERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (889)
Q Consensus 639 ~~~~~lg~~~~~~g~~~eA~~~~~~al~ 666 (889)
..+..+-..+.+.|++++|.+.|++..+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444555555566666666666665554
No 454
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.25 E-value=4.3e+02 Score=28.62 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=108.1
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAIL 539 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al 539 (889)
++|+..=.-...+.|..++++-..+.+++...+.. -.+++ ..-.+.-+-.-....+-.+++...+.+++
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~ 283 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRAL 283 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHH
Confidence 88888777778889999988877776665433211 11222 11111111222233344566777777777
Q ss_pred HhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Q 002716 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (889)
Q Consensus 540 ~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~ 619 (889)
....--+ + ...-.++.++......+. .|=..+..+..++..-..++.+-.|.+....+..-
T Consensus 284 ~~~~pGP-Y----qlqAAIaa~HA~a~~aed--------------tDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~G 344 (415)
T COG4941 284 ASRRPGP-Y----QLQAAIAALHARARRAED--------------TDWPAIDALYDALEQAAPSPVVTLNRAVALAMREG 344 (415)
T ss_pred HcCCCCh-H----HHHHHHHHHHHhhcccCC--------------CChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhh
Confidence 6543111 0 111122222222111000 00011334455555555566666777777777777
Q ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHH
Q 002716 620 PEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLK 677 (889)
Q Consensus 620 ~~~A~~~l~~al~~--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~l 677 (889)
++.++...+-.... -......+...|..+.+.|+.++|...|++++.+.++. +..+..
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88888887766554 22344566678999999999999999999999998887 444433
No 455
>PF13041 PPR_2: PPR repeat family
Probab=44.98 E-value=80 Score=23.18 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHcCC--CCHHHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLE 516 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal~~~--p~~~~l~ 516 (889)
..|..+-..+.+.|++++|.+.|++..+.. |+...+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345555666666777777777776665432 3444443
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.58 E-value=6.3e+02 Score=32.15 Aligned_cols=177 Identities=14% Similarity=0.038 Sum_probs=97.2
Q ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHc-CcchhHhhHHHH------HhhcCCcHHH----HHHHhhhhhccCcchhHH
Q 002716 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARL------GYIKGHKLWA----YEKLNSVISSVTPLGWMY 452 (889)
Q Consensus 384 ~a~~~lG~~~~~~g~~~eA~~~~~~al~~-~~~~~~~~la~~------~~~~g~~~~A----~~~~~~~~~~~~~~g~~~ 452 (889)
...+.+|..|+..|+.-+|+.+|.+|... |...++..+.+- -...|+...+ ...+.+++
T Consensus 921 v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~---------- 990 (1480)
T KOG4521|consen 921 VIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVV---------- 990 (1480)
T ss_pred HHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHH----------
Confidence 34678999999999999999999999763 322222211111 0133443222 12222222
Q ss_pred HHHhhcCChhHHHHHHHHhhhcCCC----ChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccH
Q 002716 453 QERSLYCEGDKRWEDLDKATALDPT----LSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDY 528 (889)
Q Consensus 453 ~~~~~~~~~~~A~~~~~~al~~dp~----~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~ 528 (889)
+-...++-.+.+++.-.+||+.-|+ .+..+...=+-+...|.+-+|...+-+.-......+++..+-.+.+..|..
T Consensus 991 rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 991 RLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccch
Confidence 1122233337777777777765333 333344445556778888888765543211111567777777777777765
Q ss_pred HH------------HHH-HHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 529 QA------------ALC-DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 529 ~~------------A~~-~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
+. -.. +++.+-+..|-.. -..+.+|=..+...++|.+|-..+
T Consensus 1071 ~~L~~fpfigl~~eve~~l~esaaRs~~~mk-----~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1071 EALATFPFIGLEQEVEDFLRESAARSSPSMK-----KNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHhhCCccchHHHHHHHHHHHHhhcCcccc-----ccHHHHHHHHHHhhcchhHHHHHH
Confidence 42 222 2333333333222 124445556677888999886665
No 457
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=43.99 E-value=2.6e+02 Score=25.72 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=27.7
Q ss_pred HhccCHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcccHHHHHHHHH
Q 002716 490 MTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 490 ~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
...+.....+.+++.++..++ +......+..+|... +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 345677777788887777766 666666666666543 3334444443
No 458
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=43.69 E-value=16 Score=31.46 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhhhcccccC
Q 002716 289 VELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (889)
Q Consensus 289 ~~~~~~a~~~~~~~l~~~c~~~~~~~l~~~l~ 320 (889)
+.++.+|..++...|...|.+++..|+....+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~ 33 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQ 33 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777888888877777644443
No 459
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=43.40 E-value=1.2e+02 Score=28.97 Aligned_cols=89 Identities=11% Similarity=-0.018 Sum_probs=63.1
Q ss_pred cEEEEeCCeEEEehHHHHhhcChhhhhhhcCCCCCCCc----CceEecCCCCCHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 002716 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (889)
Q Consensus 183 Dv~~~v~~~~~~~hr~vLaa~s~~F~~mf~~~~~e~~~----~~i~l~~~~~~~~~~~~ll~~~Yt~~~~~~~~~~~~~l 258 (889)
=|-|-|||..|---|.-|.--+.-|..-|-..-++... .---+-| -+|.-|-.+|+|+..|++- ++.-.-..+
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgklv-l~~l~eeGv 98 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKLV-LNKLSEEGV 98 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchhh-hhhhhhhcc
Confidence 36677899999999999977776776656443222211 1122332 6789999999999999998 888666789
Q ss_pred HHHHHHHcHHHHHHHH
Q 002716 259 LIFANKFCCERLKDAC 274 (889)
Q Consensus 259 l~~A~~~~~~~l~~~~ 274 (889)
|.-|++|-...|...+
T Consensus 99 L~EAefyn~~~li~li 114 (210)
T KOG2715|consen 99 LEEAEFYNDPSLIQLI 114 (210)
T ss_pred chhhhccCChHHHHHH
Confidence 9999999555444433
No 460
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=43.14 E-value=33 Score=21.84 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
|+.+-..|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45556666666666666666665543
No 461
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=43.08 E-value=5.7e+02 Score=29.40 Aligned_cols=96 Identities=14% Similarity=-0.044 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchH
Q 002716 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSL 590 (889)
Q Consensus 511 ~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl 590 (889)
+..++..+-.++...-...-....+.+++....+.. +++.++.+|...|+ ++- .
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~km-------al~el~q~y~en~n-~~l------------------~ 118 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKM-------ALLELLQCYKENGN-EQL------------------Y 118 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHhcCc-hhh------------------H
Confidence 445555555555555555556677777777655544 67777777777644 221 3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Q 002716 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (889)
Q Consensus 591 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 633 (889)
..+++..+.+-++...-..++..|.. ++...+..+|.+++..
T Consensus 119 ~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 119 SLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 44577777777777666677776655 7777888888877654
No 462
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.02 E-value=57 Score=20.85 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHH
Q 002716 618 NCPEAAMRSLQLARQHAASDHERLVYEG 645 (889)
Q Consensus 618 g~~~~A~~~l~~al~~~p~~~~~~~~lg 645 (889)
|+.+.|...|++++...|..+..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4556667777777777776666665544
No 463
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.59 E-value=3.7e+02 Score=31.47 Aligned_cols=87 Identities=15% Similarity=-0.011 Sum_probs=54.4
Q ss_pred HHHhhhcCCCChhhHH-HHHHHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 468 LDKATALDPTLSYPYM-YRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 468 ~~~al~~dp~~~~a~~-~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
|+.|.+.-|+-+.... ..+..+..+|-.++|+ .+.++++..+ .+..+.|+++.|.++..++ ++.
T Consensus 602 ~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL-------~~s~D~d~rF---elal~lgrl~iA~~la~e~-----~s~ 666 (794)
T KOG0276|consen 602 LEVADGVLPTIPKEIRTKVAHFLESQGMKEQAL-------ELSTDPDQRF---ELALKLGRLDIAFDLAVEA-----NSE 666 (794)
T ss_pred ccccccccccCchhhhhhHHhHhhhccchHhhh-------hcCCChhhhh---hhhhhcCcHHHHHHHHHhh-----cch
Confidence 3444444455554333 3345555666666554 4455554433 3456789999987765543 333
Q ss_pred chhhhHHHHHHHHHHHHHhhchhHHHHHH
Q 002716 547 MFEGRVAASQLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 547 ~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 575 (889)
.-|..||.+....+++..|.++|
T Consensus 667 ------~Kw~~Lg~~al~~~~l~lA~EC~ 689 (794)
T KOG0276|consen 667 ------VKWRQLGDAALSAGELPLASECF 689 (794)
T ss_pred ------HHHHHHHHHHhhcccchhHHHHH
Confidence 35677899999999999998887
No 464
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=40.14 E-value=1.8e+02 Score=33.68 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhc-----CCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Q 002716 463 KRWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (889)
Q Consensus 463 ~A~~~~~~al~~-----dp~~~~a~~~la~~~~~~g~~~~Al~~l~ka 505 (889)
.++..|.+|+.. +-...++|.++|-.+++.++|.+|+...-.+
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 344445555432 4457889999999999999999999887765
No 465
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.12 E-value=1.5e+02 Score=24.50 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=14.4
Q ss_pred hhhHHHhcccHHHHHHHHHHHHH
Q 002716 389 LGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 389 lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
.+.-+-..|++.+|+.+|+.+++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444466777777777766654
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.00 E-value=3e+02 Score=25.22 Aligned_cols=80 Identities=15% Similarity=0.033 Sum_probs=50.1
Q ss_pred cchhhhhhHHHHhcchhhhC--chhHHHHHHHHHHHHcCChHHHHHHHHHHHccCc--c--hHHHHHHHHHHHcCCHHHH
Q 002716 690 CSSTVVSLLEDALKCPSDRL--RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--T--RAHQGLARVHFLKNNKTTA 763 (889)
Q Consensus 690 ~~~~~~~~~~~Al~~~~~~~--~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p--~--~a~~~La~~~~~~g~~~~A 763 (889)
........+++++..+.... ....-+..+-..|...-+ .+.+.|+......- . ..|...|..+...|++++|
T Consensus 41 ~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A 118 (126)
T PF08311_consen 41 KQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKA 118 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHH
T ss_pred chhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33444557777777776642 112334444444444333 78888877765442 2 6677788899999999999
Q ss_pred HHHHHHHH
Q 002716 764 YEEMTKLI 771 (889)
Q Consensus 764 ~~~~~~al 771 (889)
.+.|+.+|
T Consensus 119 ~~I~~~Gi 126 (126)
T PF08311_consen 119 DEIYQLGI 126 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99888764
No 467
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=39.61 E-value=9.7 Score=44.59 Aligned_cols=93 Identities=20% Similarity=0.037 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHH--cCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 002716 480 YPYMYRASSLMTKQNVEAALAEINRIL--GFKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (889)
Q Consensus 480 ~a~~~la~~~~~~g~~~~Al~~l~kal--~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~ 555 (889)
.....-+..++..|++..|...++++- .+.+ ......+.+.+....|++++|+..+.. +.. ...........+
T Consensus 25 ~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~-~~~--~~l~~~~~~~~~ 101 (536)
T PF04348_consen 25 QLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA-QDL--WQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc-CCc--ccCCHHHHHHHH
Confidence 334455788899999999999998876 3344 556677789999999999999998874 111 111111122455
Q ss_pred HHHHHHHHHhhchhHHHHHH
Q 002716 556 QLHMLVREHIDNWTIADCWL 575 (889)
Q Consensus 556 ~~lg~~~~~~~~~~~A~~~~ 575 (889)
...+.++...|++-+|....
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~ 121 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARER 121 (536)
T ss_dssp --------------------
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 66788888888887776655
No 468
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.46 E-value=1.3e+02 Score=36.06 Aligned_cols=95 Identities=21% Similarity=0.164 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCC----CChHHHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 002716 791 ELTRADLEMVTQLDP----LRVYPYRYRAAVLMD--SHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRD 863 (889)
Q Consensus 791 ~~A~~~l~~al~l~p----~~~~~~~~la~~~~~--~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~ 863 (889)
..+...|..++.+-| .......+.+.+++. .|++.+++..-+-++...|.. ..+.-++..|...+.++-|+++
T Consensus 70 ~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rd 149 (748)
T KOG4151|consen 70 EGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRD 149 (748)
T ss_pred hccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 445555556666555 234445556665554 568899999999999999986 5555678888888889999999
Q ss_pred HHHHHccCCCCHHHHHHHHhhh
Q 002716 864 CRAALSVDPNDQEMLELHSRVY 885 (889)
Q Consensus 864 ~~~al~l~P~~~~~l~l~~~~~ 885 (889)
..-....+|++.+..+...+++
T Consensus 150 l~i~~~~~p~~~~~~eif~elk 171 (748)
T KOG4151|consen 150 LRIVEKMDPSNVSASEIFEELK 171 (748)
T ss_pred HHHHhcCCCCcchHHHHHHHHH
Confidence 8888999999988777766654
No 469
>PRK12798 chemotaxis protein; Reviewed
Probab=38.72 E-value=6.1e+02 Score=28.46 Aligned_cols=163 Identities=16% Similarity=0.080 Sum_probs=107.1
Q ss_pred hhHHHHH-HHHHhccCHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCcchhhhHHH
Q 002716 480 YPYMYRA-SSLMTKQNVEAALAEINRILGFKL----ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (889)
Q Consensus 480 ~a~~~la-~~~~~~g~~~~Al~~l~kal~~~p----~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a 554 (889)
.+|..+. -..+...+..+|+..|+.+-=..| ...++..--.+.-..|+.+++..+-.+.+..+...+.... .
T Consensus 148 g~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~---F 224 (421)
T PRK12798 148 GAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQ---F 224 (421)
T ss_pred hhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHH---H
Confidence 3444443 345667788999999999988888 3344555455667889999999999999988887772111 1
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhc-CC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 002716 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-DA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (889)
Q Consensus 555 ~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~-~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 632 (889)
............+ ......+..++.. +| ....+|..++..-.-.|+.+-|.-.-++++.
T Consensus 225 ~~~F~~~~~~~~d-------------------~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~ 285 (421)
T PRK12798 225 AQRFVDLVVRLDD-------------------EIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALK 285 (421)
T ss_pred HHHHHHHHHhccc-------------------cccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1111111111111 0012233555543 43 3456888999999999999999999999988
Q ss_pred cCC----CcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 633 HAA----SDHERLVYEGWILYDTSHCEEGLRKAEES 664 (889)
Q Consensus 633 ~~p----~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 664 (889)
+.. ....+..+.|....-..++++|++.+..+
T Consensus 286 L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 286 LADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred hccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 753 34556677777777778888888877654
No 470
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.56 E-value=1.5e+02 Score=24.42 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=10.6
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 002716 753 VHFLKNNKTTAYEEMTKLI 771 (889)
Q Consensus 753 ~~~~~g~~~~A~~~~~~al 771 (889)
-+-..|++.+|+..|++++
T Consensus 15 e~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 15 KAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHhcCCHHHHHHHHHHHH
Confidence 3445566666666655443
No 471
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=37.32 E-value=1.4e+02 Score=27.14 Aligned_cols=57 Identities=11% Similarity=-0.000 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCcc-----------------hHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----------------RAHQGLARVHFLKNNKTTAYEEMTKL 770 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~-----------------~a~~~La~~~~~~g~~~~A~~~~~~a 770 (889)
-+..+|......+++-.++-.|++|+.+..+ -.-.+||..+..+|+.+-.+++++-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA 76 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA 76 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH
Confidence 3567888889999999999999999875422 23456888999999988888777655
No 472
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=36.36 E-value=90 Score=24.29 Aligned_cols=52 Identities=25% Similarity=0.467 Sum_probs=38.5
Q ss_pred CCC-CchhHHHHHHHHHHHHhcCCcccchhhHHHHHHHh--hccchhHHHHHHHHhhhc
Q 002716 57 PNY-KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVF--KGLGEAKLMRRSLRKAWQ 112 (889)
Q Consensus 57 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 112 (889)
|.| .|=|+-|.|-..|+.|.. ++|...--+.-++ -=+||...+|.+++.|++
T Consensus 5 pnl~~pD~fY~~Li~aH~gLs~----e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~ 59 (60)
T PF10932_consen 5 PNLADPDDFYEALIEAHRGLSD----EQSAALNARLILLLANHIGDRAVLREAIAAARR 59 (60)
T ss_pred CCCCChhHHHHHHHHHHhCCCH----HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 444 488999999999999864 4554444333322 458999999999999985
No 473
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.90 E-value=4.2e+02 Score=28.72 Aligned_cols=42 Identities=12% Similarity=0.006 Sum_probs=35.5
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHH
Q 002716 370 ERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 370 ~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
..+.+..++..+.....+.+|.-|.+..|++.|+-.|+++..
T Consensus 112 DNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~ 153 (449)
T COG3014 112 DNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANE 153 (449)
T ss_pred cchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence 344556777788888888999999999999999999999875
No 474
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.51 E-value=1e+02 Score=30.65 Aligned_cols=51 Identities=18% Similarity=0.034 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 002716 495 VEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (889)
Q Consensus 495 ~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 545 (889)
.+..++..++.+...|++..+...+.++...|+.++|....+++....|.+
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 345566677888888999999999999999999999999999999999943
No 475
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.50 E-value=68 Score=20.78 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 715 LNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 715 ~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
|+.+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555666666666666666666543
No 476
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=34.40 E-value=76 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
.+...|.-.-..|+|++|+.+|.+|++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556666678999999999999876
No 477
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.29 E-value=60 Score=27.05 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002716 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (889)
Q Consensus 618 g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al 665 (889)
+.|+.|..+.++++..+. .|+.++|+.+|++++
T Consensus 3 ~~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi 35 (79)
T cd02679 3 GYYKQAFEEISKALRADE---------------WGDKEQALAHYRKGL 35 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHH
Confidence 346667777766665543 478888888888776
No 478
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.10 E-value=2.2e+02 Score=33.92 Aligned_cols=55 Identities=13% Similarity=0.001 Sum_probs=35.2
Q ss_pred ccCHHHHHHHHHHHHcCCC--CHHHHHHHHHHHH---------hcccHHHHHHHHHHHHHhCCCCc
Q 002716 492 KQNVEAALAEINRILGFKL--ALECLELRFCFFL---------ALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 492 ~g~~~~Al~~l~kal~~~p--~~~~l~~~a~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
.|+-++|+...-.+++... .++.+-+-|++|- ..+..+.|+..|+++.+..|...
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~ 321 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY 321 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh
Confidence 4566666666666555443 5555555566653 23556778888888888888765
No 479
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.96 E-value=6e+02 Score=26.96 Aligned_cols=169 Identities=12% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHhc--CCCChHHH--HHHHHHHHHhCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHhcCCHHHHHH
Q 002716 590 LSVIYQMLES--DAPKGVLY--FRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLR 659 (889)
Q Consensus 590 l~~~~~al~~--~p~~~~~~--~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------~~~~~lg~~~~~~g~~~eA~~ 659 (889)
++.+.+-+.. +|.....+ +..+..-.....-++-++.+++.++....+. +++.++|..|.+.++.+.+.+
T Consensus 57 maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~ 136 (412)
T COG5187 57 MAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFE 136 (412)
T ss_pred hhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCCcchhhhhhHHHHhcchhhh---CchhHHHHHHHHHHHHcCChHHHHHHHH
Q 002716 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR---LRKGQALNNLGSVYVDCGQLDLAADCYS 736 (889)
Q Consensus 660 ~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~---~~~~~~~~~Lg~~y~~~g~~~~A~~~~~ 736 (889)
...+.+...-.-......-..-...|........+.+.++.+-..++++ -++...-...|.......++.+|...+-
T Consensus 137 ~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~ 216 (412)
T COG5187 137 WMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLS 216 (412)
T ss_pred HHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHccCcc---hHHHHHHHHHHHcC
Q 002716 737 NALKIRHT---RAHQGLARVHFLKN 758 (889)
Q Consensus 737 ~al~~~p~---~a~~~La~~~~~~g 758 (889)
..+..... ..|...++...-.|
T Consensus 217 d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 217 DILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHhccccccccccHHHHHHHHHHhh
No 480
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=33.53 E-value=9.1e+02 Score=28.96 Aligned_cols=41 Identities=10% Similarity=-0.125 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002716 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQ 802 (889)
Q Consensus 745 ~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~ 802 (889)
.+....|.-....|++++|+.+|.-+ ++++.++..+.+.+.
T Consensus 415 ~i~~~~A~~~e~~g~~~dAi~Ly~La-----------------~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 415 EIIEQAAREAEERGRFEDAILLYHLA-----------------EEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHT-----------------T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-----------------hhHHHHHHHHHHHHH
Confidence 45556777788888888888887765 455777776666553
No 481
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=32.86 E-value=2.7e+02 Score=22.99 Aligned_cols=24 Identities=8% Similarity=0.115 Sum_probs=16.4
Q ss_pred HhhhHHHhcccHHHHHHHHHHHHH
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
..|.-.-..|+|++|+.+|.++++
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445567888888888877765
No 482
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.31 E-value=6.8e+02 Score=27.10 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002716 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK--GVLYFRQSLLLLRLNCPEAAMRSLQL 629 (889)
Q Consensus 552 ~~a~~~lg~~~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~ 629 (889)
.+++...+..|.+.|+.+.|.+++ -..+++.....-.- .....++|..|....-..+.++..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~--------------~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~ 169 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEAL--------------RKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKS 169 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHH--------------HHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 368888999999999999999998 44445555444322 22345677777665555555555555
Q ss_pred HHHcCCCcHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002716 630 ARQHAASDHER----LVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (889)
Q Consensus 630 al~~~p~~~~~----~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 670 (889)
.++...+ .+. -.+.|.......++.+|-..|-.++..-.+
T Consensus 170 liE~GgD-WeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 170 LIEEGGD-WERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHhCCC-hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 5555443 332 344566667778899999988888755443
No 483
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.67 E-value=66 Score=26.62 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=12.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 002716 649 YDTSHCEEGLRKAEESI 665 (889)
Q Consensus 649 ~~~g~~~eA~~~~~~al 665 (889)
-..|++++|+.+|..++
T Consensus 17 D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 17 DQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHccCHHHHHHHHHHHH
Confidence 34588888888888877
No 484
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.15 E-value=73 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.0
Q ss_pred hcCCHHHHHHHHHHHHh
Q 002716 650 DTSHCEEGLRKAEESIQ 666 (889)
Q Consensus 650 ~~g~~~eA~~~~~~al~ 666 (889)
..|++++|+..|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34888888888888873
No 485
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=30.10 E-value=7.6e+02 Score=29.64 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=20.6
Q ss_pred HHHHhccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCc
Q 002716 487 SSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (889)
Q Consensus 487 ~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 546 (889)
.++.-.|+|+.|++.+-+ ....+....+...+..++.+ +.-.-..-...+..+|+.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gL--L~~~~~~~~~lls~~~~~~ 322 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGL--LRVSDSSSAPLLSVDPGDP 322 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCC--CCCCCccccceeeecCCCC
Confidence 567788999999999877 11222333444444444332 2221111156666666654
No 486
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=1.2e+03 Score=29.19 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=40.5
Q ss_pred HHHHHHHHh-cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCH
Q 002716 794 RADLEMVTQ-LDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIA---FKADLHLLHLRAAFHEHTGDV 857 (889)
Q Consensus 794 ~~~l~~al~-l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~---~~p~~~~l~l~a~~~~~~g~~ 857 (889)
.+.|.+.+. ++.++..++..-..-+...|+|..|++.+.++++ -.++...+.+.+.+...+|-.
T Consensus 1216 ~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1216 NENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 334444443 3445555555555666778899999999999998 444445555666666666654
No 487
>PHA03098 kelch-like protein; Provisional
Probab=29.60 E-value=20 Score=42.27 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 002716 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (889)
Q Consensus 250 ~~~~~~~~ll~~A~~~~~~~l~~~~~~~l~~~~ 282 (889)
++.+++.+++.+|+.|.+..|++.|...++...
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf 137 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNI 137 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 778999999999999999999999988876654
No 488
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.27 E-value=3.7e+02 Score=27.61 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHH---------HcCChHHHHHHHHHHHccCcc
Q 002716 712 GQALNNLGSVYV---------DCGQLDLAADCYSNALKIRHT 744 (889)
Q Consensus 712 ~~~~~~Lg~~y~---------~~g~~~~A~~~~~~al~~~p~ 744 (889)
+..+-..|..+. ..++...|..++++|+.++|.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 445666677663 456778888888888888876
No 489
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.02 E-value=84 Score=26.22 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=11.9
Q ss_pred hCCCHHHHHHHHHHHHh
Q 002716 820 DSHKENEAIAELSRAIA 836 (889)
Q Consensus 820 ~~g~~~eA~~~l~kal~ 836 (889)
+.|+.++|+.+|++++.
T Consensus 20 E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 20 EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 45777777777777764
No 490
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.01 E-value=1e+02 Score=25.54 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=20.0
Q ss_pred HHHhhhHHHhcccHHHHHHHHHHHHH
Q 002716 386 FHQLGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 386 ~~~lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
+...+.-.-..|+|++|+.+|+.|++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33445555578999999999999986
No 491
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.80 E-value=1.3e+03 Score=28.90 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=18.5
Q ss_pred hhHHHhcccHHHHHHHHHHHH
Q 002716 390 GCVRLLRKEYDEAEHLFEAAV 410 (889)
Q Consensus 390 G~~~~~~g~~~eA~~~~~~al 410 (889)
|..++.+|+|++|...|+++-
T Consensus 353 a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 353 AFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHHhhc
Confidence 677889999999999998873
No 492
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=27.55 E-value=90 Score=25.74 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=18.4
Q ss_pred HhhhHHHhcccHHHHHHHHHHHHH
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
.-|.-.=..|+|++|+++|.+|++
T Consensus 11 ~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 11 TQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHhhHhhhHHHHHHHHHHHHH
Confidence 334444467999999999999987
No 493
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=27.11 E-value=8.3e+02 Score=26.48 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-cCHHHHHHHHhcCCHHHHHHHHHHH
Q 002716 722 YVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEKRSEYCDRELTRADLEMV 800 (889)
Q Consensus 722 y~~~g~~~~A~~~~~~al~~~p~~a~~~La~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~A~~~l~~a 800 (889)
....|+...|.+. .+-+++.....|...-.++...|+|++-.+.... +..| ...........+|+..+|..+..++
T Consensus 187 li~~~~~k~A~kl-~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k~ 263 (319)
T PF04840_consen 187 LIEMGQEKQAEKL-KKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPKI 263 (319)
T ss_pred HHHCCCHHHHHHH-HHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3557777776665 4555664447787888888999999765544321 2222 1112222222245555555555441
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCHHHHHHH
Q 002716 801 TQLDPLRVYPYRYRAAVLMDSHKENEAIAE 830 (889)
Q Consensus 801 l~l~p~~~~~~~~la~~~~~~g~~~eA~~~ 830 (889)
. + ......|.+.|++.+|.+.
T Consensus 264 ---~----~--~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 264 ---P----D--EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred ---C----h--HHHHHHHHHCCCHHHHHHH
Confidence 0 0 2344455555555555543
No 494
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=26.90 E-value=1.9e+02 Score=27.23 Aligned_cols=49 Identities=10% Similarity=-0.113 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCC
Q 002716 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (889)
Q Consensus 605 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~ 653 (889)
......+...+..|++.-|....+.++..+|++.++....+.++...|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777777777777777776666666655543
No 495
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=26.60 E-value=3e+02 Score=26.29 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHc-------CCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 002716 481 PYMYRASSLMTKQNVEAALAEINRILG-------FKL--ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 481 a~~~la~~~~~~g~~~~Al~~l~kal~-------~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
.....+.-.+..|+...|.+.++-+-. .-| ....-..++.-+...|++.+|...+..++.
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 345567788899999999998887632 123 334445668888999999999999888874
No 496
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=25.74 E-value=1.3e+02 Score=19.44 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHc
Q 002716 714 ALNNLGSVYVDCGQLDLAADCYSNALK 740 (889)
Q Consensus 714 ~~~~Lg~~y~~~g~~~~A~~~~~~al~ 740 (889)
.|..+-..+.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666667777777666665543
No 497
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=25.54 E-value=5.3e+02 Score=23.63 Aligned_cols=49 Identities=10% Similarity=0.001 Sum_probs=35.9
Q ss_pred HHHHhCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002716 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (889)
Q Consensus 613 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~ 662 (889)
.+...|.+...+.+++..+..++.++..+..+..+|.+. +..+.+..++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344567889999999999988887788888888888754 3445555554
No 498
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.45 E-value=3.4e+02 Score=28.57 Aligned_cols=85 Identities=14% Similarity=0.075 Sum_probs=66.3
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhc--cCHHHHHHHHHHHHcCCC-CHHHHHHHHHHH------HhcccHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK--QNVEAALAEINRILGFKL-ALECLELRFCFF------LALEDYQAAL 532 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~--g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~------~~~g~~~~A~ 532 (889)
+.-+..++.+++-+|.+-+.|..+-.++-.- .++..-+...++.+..++ +..++..+-++. +.-.++....
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 5566778899999999999998887776544 678888888999999999 777766554444 5555666777
Q ss_pred HHHHHHHHhCCCCc
Q 002716 533 CDVQAILTLSPDYR 546 (889)
Q Consensus 533 ~~~~~al~~~p~~~ 546 (889)
++-..++..|+.+.
T Consensus 171 eytt~~I~tdi~N~ 184 (328)
T COG5536 171 EYTTSLIETDIYNN 184 (328)
T ss_pred HhHHHHHhhCCCCh
Confidence 77788889999888
No 499
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.37 E-value=1.4e+02 Score=24.51 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHH
Q 002716 385 AFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (889)
Q Consensus 385 a~~~lG~~~~~~g~~~eA~~~~~~al~ 411 (889)
.+...|.-+-..|++++|+.+|.+|++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556678999999999998876
No 500
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=25.04 E-value=1.3e+03 Score=28.21 Aligned_cols=153 Identities=8% Similarity=-0.051 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHcCCC-CHHHHH--HHHHHHH-hcccHHHHHHHHHH
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLE--LRFCFFL-ALEDYQAALCDVQA 537 (889)
Q Consensus 462 ~~A~~~~~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~--~~a~~~~-~~g~~~~A~~~~~~ 537 (889)
++-+..++.-+.+++.....+..+-.++...|+.++-...-.++-.+.| .+..+. +...++. ..++-.++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 5556677777788888888888888888888988776666666666666 333332 2333333 23778888899999
Q ss_pred HHHhCCCCcchhhhHHHHHHHHHH--HHHhhchhHHHHHHHhhhhcccccccchHHHHHHHHhcCC-------CChHHHH
Q 002716 538 ILTLSPDYRMFEGRVAASQLHMLV--REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-------PKGVLYF 608 (889)
Q Consensus 538 al~~~p~~~~~~~~~~a~~~lg~~--~~~~~~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p-------~~~~~~~ 608 (889)
++.-. +.+..+..+ +.+..+.. +...++++.-...| .+++..-- .....+.
T Consensus 176 al~dy-~~v~iw~e~-~~y~~~~~~~~~~~~d~k~~R~vf------------------~ral~s~g~~~t~G~~~we~~~ 235 (881)
T KOG0128|consen 176 ALGDY-NSVPIWEEV-VNYLVGFGNVAKKSEDYKKERSVF------------------ERALRSLGSHITEGAAIWEMYR 235 (881)
T ss_pred Hhccc-ccchHHHHH-HHHHHhccccccccccchhhhHHH------------------HHHHhhhhhhhcccHHHHHHHH
Confidence 98643 333222222 33333322 23344444443333 55554321 1123344
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcC
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHA 634 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~ 634 (889)
..-..|...-..++-+.++...+...
T Consensus 236 E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 236 EFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 44455555555566666666666554
Done!