Query 002716
Match_columns 889
No_of_seqs 895 out of 5988
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 21:05:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002716.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_99-103//hhsearch_pdb/002716hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 302.5 45.1 443 383-886 84-595 (597)
2 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 297.3 45.8 367 450-884 7-382 (388)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 295.5 45.4 375 388-856 4-388 (388)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 285.7 42.6 448 361-851 99-594 (597)
5 2gw1_A Mitochondrial precursor 1.0 1 1 276.0 38.3 413 380-882 3-490 (514)
6 3fp2_A TPR repeat-containing p 1.0 1 1 269.2 39.2 402 379-843 21-497 (537)
7 2y4t_A DNAJ homolog subfamily 1.0 1 1 254.1 37.3 340 368-815 14-370 (450)
8 4g1t_A Interferon-induced prot 1.0 1 1 249.8 37.1 391 381-880 49-469 (472)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 246.9 40.8 349 462-874 9-414 (450)
10 2gw1_A Mitochondrial precursor 1.0 1 1 244.5 42.6 393 352-844 13-485 (514)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=302.49 Aligned_cols=443 Identities=13% Similarity=0.023 Sum_probs=299.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCH
Q ss_conf 999998136887123499999999999980860-2576688998650880789999851231148520488997510870
Q 002716 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (889)
Q Consensus 383 ~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~ 461 (889)
...+..++..+...|++++|+..|++++...+. .....++.++...|+...|.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-------------------------- 137 (597)
T 2xpi_A 84 EDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAK-------------------------- 137 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHH--------------------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH--------------------------
T ss_conf 999999999998745834799999999960899357999999999747699999--------------------------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----------------C-CHHHHHHHHHHHHH
Q ss_conf 389999988560399880448999999982068999999999998478----------------9-98899999999981
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK----------------L-ALECLELRFCFFLA 524 (889)
Q Consensus 462 ~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~----------------p-~~~~l~~~a~~~~~ 524 (889)
..+++++.. |.++.++..++.+|...|++++|+..|++..... + +...+..+|.+|..
T Consensus 138 ----~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 138 ----CLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp ----HHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf ----999987335-456508999999999886699999998424886322323433432112351258999998899998
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHH--------------------------------HHHHHHHHHHHHHHHCHHHHH
Q ss_conf 121999999999999749997002434--------------------------------889999999999932354798
Q 002716 525 LEDYQAALCDVQAILTLSPDYRMFEGR--------------------------------VAASQLHMLVREHIDNWTIAD 572 (889)
Q Consensus 525 ~g~~~~A~~~~~~al~~~p~~~~~~~~--------------------------------~~a~~~lg~~~~~~g~~~~A~ 572 (889)
.|++++|+..|++++..+|++...+.. ...+..++..+...|++++|.
T Consensus 213 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 39989999999999972932569999999850346156789998657742344308899999999999980731399999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99976321155554031899999984389875899998899998099889999999999809991999999889999558
Q 002716 573 CWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (889)
Q Consensus 573 ~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g 652 (889)
..+ .++++. |.+...+..++..+...|++++|+..|+++++..|.+..++..++.++...|
T Consensus 293 ~~~------------------~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 293 DYL------------------SSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHH------------------HTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHH------------------HHHHCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
T ss_conf 999------------------876438-8309999999999998468999999999999729553799999999999827
Q ss_pred CHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHC----CHHHHHHHHHHHHHHCCC
Q ss_conf 7999999999998018884-99999999999747998760246665999830133107----525999998999997399
Q 002716 653 HCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RKGQALNNLGSVYVDCGQ 727 (889)
Q Consensus 653 ~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~----~~~~~~~~Lg~~y~~~g~ 727 (889)
++++|+..+++++...|+. ..+..++..+...| .+++|+..+.+.. ....++..+|.+|...|+
T Consensus 354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-----------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 7779999999998518354799999999999835-----------69999999999987297778999999999997577
Q ss_pred HHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC----CCHHHHHHHHHHHH
Q ss_conf 68999999998733853--5999899999981899999999999999831699999999813----99789999998988
Q 002716 728 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVT 801 (889)
Q Consensus 728 ~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al 801 (889)
+++|+..|+++++..|. .++..++.++...|++++|...++++++..|.+...+..++.. |+.++|...+++++
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 79999999999986813438999999999985799999999999998488876799999999998189999999999999
Q ss_pred HC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 34------9999-1899999999996799899999999998437999-99999999999809999999999998814999
Q 002716 802 QL------DPLR-VYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPN 873 (889)
Q Consensus 802 ~l------~p~~-~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~p~ 873 (889)
+. +|.. ..++..+|.++...|++++|+..++++++..|+. ..+..++.++...|++++|.+.++++++++|+
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
T ss_conf 85323454535499999999999998047999999999999738997389999999999817899999999999720888
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 9888999985303
Q 002716 874 DQEMLELHSRVYS 886 (889)
Q Consensus 874 ~~~~l~l~~~~~~ 886 (889)
++.+...+.++..
T Consensus 583 ~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 583 EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHH
T ss_conf 7489999999874
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=297.31 Aligned_cols=367 Identities=14% Similarity=0.067 Sum_probs=236.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 4889975108703899999885603998804489999999820689999999999984789-988999999999811219
Q 002716 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDY 528 (889)
Q Consensus 450 ~~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~ 528 (889)
..+...+.+ ++|+..+.++++.+|++..++..+|.++...|++++|+..+++++..+| +...+..+|.++...|++
T Consensus 7 ~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDF---EAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 999877999---99999999999849788999999999999868999999999999761978669999999999877999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99999999999749997002434889999999999932354798999763211555540318999999843898758999
Q 002716 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (889)
Q Consensus 529 ~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~ 608 (889)
++|+..|++++..+|++. .++..+|.++...|++++|...+ .++++.+|....++.
T Consensus 84 ~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~ 139 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFI------DGYINLAAALVAAGDMEGAVQAY------------------VSALQYNPDLYCVRS 139 (388)
T ss_dssp HHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHHSCSSHHHHHH------------------HHHHHHCTTCTHHHH
T ss_pred HHHHHHHHHHHHCCCCHH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHCCCCHHHHH
T ss_conf 999999999987496539------99999999999858999999999------------------999975989689999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCC
Q ss_conf 988999980998899999999998099919999998899995587999999999998018884-9999999999974799
Q 002716 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQD 687 (889)
Q Consensus 609 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~ 687 (889)
.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|++++.++|+. .
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------- 204 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--------------- 204 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH---------------
T ss_conf 99999998468999999999998729897899999999999859999999999999855988679---------------
Q ss_pred CCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHH
Q ss_conf 876024666599983013310752599999899999739968999999998733853--599989999998189999999
Q 002716 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYE 765 (889)
Q Consensus 688 ~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~ 765 (889)
++.++|.++...|++++|+..|++++...|+ .++..+|.++...|++++|+.
T Consensus 205 --------------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 205 --------------------------AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp --------------------------HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf --------------------------999999999985789999999999985296878999999999998688999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999831699999999813----997899999989883499991899999999996799899999999998437999
Q 002716 766 EMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL 841 (889)
Q Consensus 766 ~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~ 841 (889)
.++++++..|.....+..++.. |++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+.
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999864999889999999999986997999999999986494449999999999998489999999999998609873
Q ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf -9999999999980999999999999881499998889999853
Q 002716 842 -HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLELHSRV 884 (889)
Q Consensus 842 -~~l~l~a~~~~~~g~~~~A~~~~~~al~l~p~~~~~l~l~~~~ 884 (889)
..+..++.++...|++++|+..|+++++++|++++++..++.+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99997799999986888999999999986199978999859999
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=295.52 Aligned_cols=375 Identities=14% Similarity=0.101 Sum_probs=329.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHH
Q ss_conf 8136887123499999999999980860--25766889986508807899998512311485204889975108703899
Q 002716 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRW 465 (889)
Q Consensus 388 ~lG~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~~~~A~ 465 (889)
.+|..++..|++++|+..|++++...+. .....++.++.. .+.+ ++|.
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---------------------------~~~~---~~a~ 53 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ---------------------------CRRL---DRSA 53 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---------------------------TTCH---HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------------------------CCCH---HHHH
T ss_conf 579999877999999999999998497889999999999998---------------------------6899---9999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999885603998804489999999820689999999999984789-9889999999998112199999999999974999
Q 002716 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (889)
Q Consensus 466 ~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 544 (889)
..++++++.+|.++.+|..+|.++...|++++|+..+++++..+| +...+..+|.++...|++++|+..|++++..+|+
T Consensus 54 ~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 54 HFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999976197866999999999987799999999999998749653999999999999858999999999999975989
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 70024348899999999999323547989997632115555403189999998438987589999889999809988999
Q 002716 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (889)
Q Consensus 545 ~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 624 (889)
.. .++..+|.++...|++++|...+ .++++.+|....++..+|.++...|++++|+
T Consensus 134 ~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 134 LY------CVRSDLGNLLKALGRLEEAKACY------------------LKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CT------HHHHHHHHHHHTTSCHHHHHHHH------------------HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred CH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 68------99999999999846899999999------------------9998729897899999999999859999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999998099919999998899995587999999999998018884999999999997479987602466659998301
Q 002716 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (889)
Q Consensus 625 ~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~ 704 (889)
..|+++++.+|.+..++..+|.++...|++++|+..+++++.++|++.
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-------------------------------- 237 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA-------------------------------- 237 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH--------------------------------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--------------------------------
T ss_conf 999999855988679999999999985789999999999985296878--------------------------------
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 3310752599999899999739968999999998733853--59998999999818999999999999998316999999
Q 002716 705 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 782 (889)
Q Consensus 705 ~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 782 (889)
.++.++|.++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++++..|.+...+.
T Consensus 238 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 309 (388)
T 1w3b_A 238 --------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN 309 (388)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf --------999999999998688999999999998649998899999999999869979999999999864944499999
Q ss_pred HHHHC----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCC
Q ss_conf 99813----997899999989883499991899999999996799899999999998437999-999999999998099
Q 002716 783 KRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGD 856 (889)
Q Consensus 783 ~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~ 856 (889)
.++.. |+.++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+. ..+..++.++..+|+
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999848999999999999860987399997799999986888999999999986199978999859999987459
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=285.74 Aligned_cols=448 Identities=13% Similarity=-0.020 Sum_probs=312.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 7312799999999732409999999998136887123499999999999980-860257668899865088078999985
Q 002716 361 RSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLN 439 (889)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 439 (889)
..+.+..++++++...+++ ..++.+|.++...|++++|+..|++++.. ........++.++...|++..|...+.
T Consensus 99 ~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLDITGNP----NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8347999999999608993----579999999997476999999999873354565089999999998866999999984
Q ss_pred HHHHCC-----------------------CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 123114-----------------------852048899751087038999998856039988044899999998206899
Q 002716 440 SVISSV-----------------------TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (889)
Q Consensus 440 ~~~~~~-----------------------~~~g~~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~ 496 (889)
+..... ..+|..|...+.+ ++|+..|+++++.+|+...++..++.++...+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF---DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 248863223234334321123512589999988999983998---99999999999729325699999998503461567
Q ss_pred HHHHH---HHHHHCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 99999---999984789--9889999999998112199999999999974999700243488999999999993235479
Q 002716 497 AALAE---INRILGFKL--ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (889)
Q Consensus 497 ~Al~~---l~kal~~~p--~~~~l~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A 571 (889)
.+... +.+....++ ....+..++..|...|++++|+..+++++.. |.+. .++..++.++...|++++|
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS------DLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH------HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHH------HHHHHHHHHHHHHCCHHHH
T ss_conf 89998657742344308899999999999980731399999999876438-8309------9999999999984689999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 89997632115555403189999998438987589999889999809988999999999980999199999988999955
Q 002716 572 DCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT 651 (889)
Q Consensus 572 ~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~ 651 (889)
...+ +++++.+|.+..++..++.++...|++++|...++++++..|.+...+..+|.++...
T Consensus 325 ~~~~------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 325 LAIT------------------TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHH------------------HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHH------------------HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999------------------9999729553799999999999827777999999999851835479999999999983
Q ss_pred CCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHH----CCHHHHHHHHHHHHHHCC
Q ss_conf 87999999999998018884-9999999999974799876024666599983013310----752599999899999739
Q 002716 652 SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR----LRKGQALNNLGSVYVDCG 726 (889)
Q Consensus 652 g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~----~~~~~~~~~Lg~~y~~~g 726 (889)
|++++|+..|++++++.|++ .++..++..+...| .+++|+..+.+. +....++..+|.+|...|
T Consensus 387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-----------EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 56999999999998729777899999999999757-----------7799999999999868134389999999999857
Q ss_pred CHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------CCC-HHHHHHHHHC----CCHHHH
Q ss_conf 968999999998733853--599989999998189999999999999983------169-9999999813----997899
Q 002716 727 QLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA------RNN-ASAYEKRSEY----CDRELT 793 (889)
Q Consensus 727 ~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~------~~~-~~~~~~~~~~----~~~~~A 793 (889)
++++|+..|+++++..|. .++..+|.++...|++++|+..++++++.. |.. ...+..++.. |+.++|
T Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999998488876799999999998189999999999999853234545354999999999999980479999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHH
Q ss_conf 999989883499991899999999996799899999999998437999-9999999999
Q 002716 794 RADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADL-HLLHLRAAFH 851 (889)
Q Consensus 794 ~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~ 851 (889)
...++++++.+|.+..++..+|.+|...|++++|+..++++++..|+. ..+..++.+|
T Consensus 536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999999738997389999999999817899999999999720888748999999987
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=275.96 Aligned_cols=413 Identities=15% Similarity=0.083 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 999999998136887123499999999999980860-2576688998650880789999851231148520488997510
Q 002716 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (889)
Q Consensus 380 ~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~ 458 (889)
...+.++..+|..++..|+|++|+..|++++..++. .....+ |.++...+.+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~l---------------------------a~~~~~~g~~ 55 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNL---------------------------SACYVSVGDL 55 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHH---------------------------HHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH---------------------------HHHHHHHHHH
T ss_conf 0457999998789998602789999999998559227899868---------------------------8999988549
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH---HCCCHHHHHHH
Q ss_conf 8703899999885603998804489999999820689999999999984789-9889999999998---11219999999
Q 002716 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFL---ALEDYQAALCD 534 (889)
Q Consensus 459 ~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~---~~g~~~~A~~~ 534 (889)
++|+..++++++.+|++..++..+|.++...|++++|+..+++++...| +............ ..+...+++..
T Consensus 56 ---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 56 ---KKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp ---HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---99999998776069378999998889999876688899999999955987511378999999999999999999998
Q ss_pred HHHHHHHCCCCCCH-------------------------------------HHHHHHHHHHHHHHHH---HHCHHHHHHH
Q ss_conf 99999749997002-------------------------------------4348899999999999---3235479899
Q 002716 535 VQAILTLSPDYRMF-------------------------------------EGRVAASQLHMLVREH---IDNWTIADCW 574 (889)
Q Consensus 535 ~~~al~~~p~~~~~-------------------------------------~~~~~a~~~lg~~~~~---~g~~~~A~~~ 574 (889)
++.+... |+.... .....++..+|..+.. .|++++|...
T Consensus 133 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 211 (514)
T 2gw1_A 133 IDTATAT-PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADES 211 (514)
T ss_dssp -------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHH
T ss_pred HHHHHHH-HHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9999876-651267724678863447861589999986258788888725995888999989999876233229999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHH-----C--C-------CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 976321155554031899999984-----3--8-------9875899998899998099889999999999809991999
Q 002716 575 LQLYDRWSSVDDIGSLSVIYQMLE-----S--D-------APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (889)
Q Consensus 575 ~~l~~~~~~~dd~~sl~~~~~al~-----~--~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 640 (889)
+ .++++ . . |....++..+|.++...|++++|+..++++++..|. ..+
T Consensus 212 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~ 272 (514)
T 2gw1_A 212 F------------------TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNS 272 (514)
T ss_dssp H------------------HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHH
T ss_pred H------------------HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHH
T ss_conf 9------------------999988665422381001148278999999999999878999999999999863864-899
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHH
Q ss_conf 99988999955879999999999980188849999999999974799876024666599983013310752599999899
Q 002716 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720 (889)
Q Consensus 641 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~ 720 (889)
+..+|.++...|++++|+..+++++...|+. ..++..+|.
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~l~~ 312 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNN----------------------------------------SSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------------------------------------THHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----------------------------------------HHHHHHHHH
T ss_conf 9999999998888999999999986138677----------------------------------------899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC----CCHHHHH
Q ss_conf 999739968999999998733853--5999899999981899999999999999831699999999813----9978999
Q 002716 721 VYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTR 794 (889)
Q Consensus 721 ~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~ 794 (889)
++...|++++|+..|+++++..|. .++..+|.++...|++++|+..++++++..|.+...+..++.. |++++|.
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99980779999999999987385028999999999998689999999999999875467789999999998788999999
Q ss_pred HHHHHHHHCCCCCHH------HHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999898834999918------99999999996---799899999999998437999-99999999999809999999999
Q 002716 795 ADLEMVTQLDPLRVY------PYRYRAAVLMD---SHKENEAIAELSRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDC 864 (889)
Q Consensus 795 ~~l~~al~l~p~~~~------~~~~la~~~~~---~g~~~eA~~~l~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~ 864 (889)
..+++++...|.+.. ++..+|.++.. .|++++|+..+++++...|+. ..+..++.++...|++++|+..+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999997612332178999999999999866332588899999999998758555899999999999825799999999
Q ss_pred HHHHCCCCCCHHHHHHHH
Q ss_conf 998814999988899998
Q 002716 865 RAALSVDPNDQEMLELHS 882 (889)
Q Consensus 865 ~~al~l~p~~~~~l~l~~ 882 (889)
+++++++|+++++...+.
T Consensus 473 ~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 473 EESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHH
T ss_conf 999876614688999999
No 6
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=269.17 Aligned_cols=402 Identities=12% Similarity=0.053 Sum_probs=306.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999999998136887123499999999999980860--25766889986508807899998512311485204889975
Q 002716 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (889)
Q Consensus 379 ~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~ 456 (889)
....+.+++.+|..++..|+|++|+..|++++...+. ..+..++ .++...+
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la---------------------------~~~~~~g 73 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS---------------------------ACYISTG 73 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHH---------------------------HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHH---------------------------HHHHHCC
T ss_conf 0788999999999999864299999999999863899848999999---------------------------9999868
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 10870389999988560399880448999999982068999999999998478998899999999981121999999999
Q 002716 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (889)
Q Consensus 457 ~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~ 536 (889)
.+ ++|+..++++++.+|+++.+++.+|.++...|++++|+..++ ++...|...... ...+...+...+|+..++
T Consensus 74 ~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~ 147 (537)
T 3fp2_A 74 DL---EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS--IEPMLERNLNKQAMKVLN 147 (537)
T ss_dssp CH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHH
T ss_pred CH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCCCHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 99---999999999986098628999999999998389999999999-986487878588--999998778988999999
Q ss_pred HHHHHCCCCCCHHHH----H---------------------------HHHHHH--------HHHHHHHHCHHHHHHHHHH
Q ss_conf 999749997002434----8---------------------------899999--------9999993235479899976
Q 002716 537 AILTLSPDYRMFEGR----V---------------------------AASQLH--------MLVREHIDNWTIADCWLQL 577 (889)
Q Consensus 537 ~al~~~p~~~~~~~~----~---------------------------~a~~~l--------g~~~~~~g~~~~A~~~~~l 577 (889)
+++...|........ . .....+ +......+++++|...+
T Consensus 148 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~-- 225 (537)
T 3fp2_A 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY-- 225 (537)
T ss_dssp HHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 999747454543450675799999744749999987632564617899999998788764020688887999999999--
Q ss_pred HHHCCCCCCCCHHHHHHHHHHCCCCCHH-------HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 3211555540318999999843898758-------999988999980998899999999998099919999998899995
Q 002716 578 YDRWSSVDDIGSLSVIYQMLESDAPKGV-------LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (889)
Q Consensus 578 ~~~~~~~dd~~sl~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~ 650 (889)
+++++.+|.+.. ++..+|.++...|++++|+..++++++..|. ..++..+|.++..
T Consensus 226 ----------------~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 226 ----------------HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLAD 288 (537)
T ss_dssp ----------------HHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCC
T ss_pred ----------------HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf ----------------99998787740445999999999999987545578999999999866987-4699999999998
Q ss_pred CCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHC----CHHHHHHHHHHHHHHC
Q ss_conf 587999999999998018884-99999999999747998760246665999830133107----5259999989999973
Q 002716 651 TSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL----RKGQALNNLGSVYVDC 725 (889)
Q Consensus 651 ~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~~----~~~~~~~~Lg~~y~~~ 725 (889)
.|++++|+..+++++...|+. .++..+|.++...+ .+++|+..+.+.+ ....++..+|.++...
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ-----------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred HCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 037999999999975459998799999999998668-----------999999999999985999779999999999984
Q ss_pred CCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCH-------------HHHHHHHHC---
Q ss_conf 9968999999998733853--5999899999981899999999999999831699-------------999999813---
Q 002716 726 GQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA-------------SAYEKRSEY--- 787 (889)
Q Consensus 726 g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~--- 787 (889)
|++++|+..++++++..|. .++..+|.++...|++++|+..++++++..|... .++......
T Consensus 358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 77999999999998739998599999999998837889999999999870976244688899999889999997640100
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf ----99789999998988349999189999999999679989999999999843799999
Q 002716 788 ----CDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAELSRAIAFKADLHL 843 (889)
Q Consensus 788 ----~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l~kal~~~p~~~~ 843 (889)
|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|+...
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 224757999999999999749997899999999999851499999999999986899388
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=254.05 Aligned_cols=340 Identities=15% Similarity=0.110 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 999999732409999999998136887123499999999999980860--257668899865088078999985123114
Q 002716 368 FLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSV 445 (889)
Q Consensus 368 ~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 445 (889)
.+.+++...++ .+.++..+|..++..|++++|+..|++++...+. .....++.
T Consensus 14 ~~~~~~~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~---------------------- 68 (450)
T 2y4t_A 14 GTENLYFQSMA---DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRAT---------------------- 68 (450)
T ss_dssp ---------CH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH----------------------
T ss_pred CCCCCCCCCHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----------------------
T ss_conf 64235665378---99999999999998799999999999999849716899999999----------------------
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CH---HHHHHHHHH
Q ss_conf 85204889975108703899999885603998804489999999820689999999999984789-98---899999999
Q 002716 446 TPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-AL---ECLELRFCF 521 (889)
Q Consensus 446 ~~~g~~~~~~~~~~~~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~---~~l~~~a~~ 521 (889)
.+...+.+ ++|+..++++++.+|+...++..+|.++...|++++|+..+++++...| +. ..+..++.+
T Consensus 69 -----~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 69 -----VFLAMGKS---KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp -----HHHHTTCH---HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred -----HHHHCCCH---HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf -----99987997---9999999999844987489999999999986999999999999972499970168899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 98112199999999999974999700243488999999999993235479899976321155554031899999984389
Q 002716 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601 (889)
Q Consensus 522 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p 601 (889)
+ .......+|.++...|++++|..++ +++++..|
T Consensus 141 ~----------------------------~~~~~~~~a~~~~~~~~~~~A~~~~------------------~~~~~~~~ 174 (450)
T 2y4t_A 141 D----------------------------EMQRLRSQALNAFGSGDYTAAIAFL------------------DKILEVCV 174 (450)
T ss_dssp H----------------------------HHHHHHHHHHHHHHHTCHHHHHHHH------------------HHHHHHCT
T ss_pred H----------------------------HHHHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHHCC
T ss_conf 9----------------------------9999999999999868999999999------------------99998688
Q ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 8758999988999980998899999999998099919999998899995587999999999998018884-999999999
Q 002716 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYA 680 (889)
Q Consensus 602 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~ 680 (889)
.+..++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|+. ..+..++.+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 97699999999998779999999999999986889879999999999975999999999999987599808999999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC------HHHHHHHHHH
Q ss_conf 9974799876024666599983013310752599999899999739968999999998733853------5999899999
Q 002716 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVH 754 (889)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~------~a~~~La~~~ 754 (889)
.. ......+|.++...|++++|+..|+++++..|. ..+..+|.++
T Consensus 255 ~~-----------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 255 KK-----------------------------LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HH-----------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HH-----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99-----------------------------9999999999987179999999999998508733689999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC----CCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 981899999999999999831699999999813----9978999999898834999918999999
Q 002716 755 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRA 815 (889)
Q Consensus 755 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~----~~~~~A~~~l~~al~l~p~~~~~~~~la 815 (889)
...|++++|+..++++++..|++..++..++.. |++++|...++++++++|++..++..++
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98788999999999998848454899999999998703799999999999885935299999999
No 8
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=249.76 Aligned_cols=391 Identities=10% Similarity=-0.044 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 99999998136887123499999999999980860257668899865088078999985123114852048899751087
Q 002716 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (889)
Q Consensus 381 ~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~g~~~~~~~~~~~ 460 (889)
.++..+..||.++..+|++++|+++|++|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~--------------------------------------------- 83 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ--------------------------------------------- 83 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------------------------------------
T ss_conf 69999999999999879999999999999998775---------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHHH--CCCHH
Q ss_conf 03899999885603998804489999999820689999999999984789---------98899999999981--12199
Q 002716 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---------ALECLELRFCFFLA--LEDYQ 529 (889)
Q Consensus 461 ~~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p---------~~~~l~~~a~~~~~--~g~~~ 529 (889)
......+|.....|..+|.+|..+|++++|+..+++++.+.+ .+..+..+|+.+.. .++|+
T Consensus 84 --------~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~ 155 (472)
T 4g1t_A 84 --------EHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNE 155 (472)
T ss_dssp --------HSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHH
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf --------075413668999999999999985982789999999999848605545532499999999999997232299
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHH
Q ss_conf 999999999974999700243488999999999993---23547989997632115555403189999998438987589
Q 002716 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI---DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (889)
Q Consensus 530 ~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~---g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~~~ 606 (889)
+|+..|++++.++|+++ .++..++.++... ++.++|+..+ +++++.+|.+..+
T Consensus 156 ~A~~~~~kal~~~p~~~------~~~~~~~~~~~~l~~~~~~~~al~~~------------------~~al~l~p~~~~~ 211 (472)
T 4g1t_A 156 RAKVCFEKALEKKPKNP------EFTSGLAIASYRLDNWPPSQNAIDPL------------------RQAIRLNPDNQYL 211 (472)
T ss_dssp HHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHSCCCCCTHHHH------------------HHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHCCCHHHHHHHHHH------------------HHHHHCCCCCHHH
T ss_conf 99999999987298999------99999999999864706899999999------------------9986549841699
Q ss_pred HHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHH
Q ss_conf 9998899998----0998899999999998099919999998899995587999999999998018884-9999999999
Q 002716 607 YFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYAL 681 (889)
Q Consensus 607 ~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~a~~~la~~~ 681 (889)
+..+|..+.. .+++++|...+++++...|....++..+|.++...|++++|+..++++++..|+. .++..+|.++
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99998899998764137999999999998849648999999999998748637899999999986987499999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHCCC
Q ss_conf 974799876024666599983013310752599999899999739968999999998733853--599989999998189
Q 002716 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN 759 (889)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~La~~~~~~g~ 759 (889)
...+ ...... .....+......+.+++|+..|++++...|. .++..+|.++...|+
T Consensus 292 ~~~~-----------~~~~~~-----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 292 RAKV-----------FQVMNL-----------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHH-----------HHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHH-----------HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998-----------876667-----------788788888877668999999887761487312443568999887402
Q ss_pred HHHHHHHHHHHHHHHCCCHH---HHHHHHH-----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99999999999998316999---9999981-----399789999998988349999189999999999679989999999
Q 002716 760 KTTAYEEMTKLIKKARNNAS---AYEKRSE-----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 831 (889)
Q Consensus 760 ~~~A~~~~~~al~~~~~~~~---~~~~~~~-----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 831 (889)
+++|+..|+++++..++... .+...+. .++.++|+..|.+++++.|....... ....+...+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~ 419 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH----------HHHHHHHHH
T ss_conf 9999999999984399976899999999999998787999999999999844943699999----------899999999
Q ss_pred HHHHHCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9998437999-999999999998099999999999988149999888999
Q 002716 832 SRAIAFKADL-HLLHLRAAFHEHTGDVLGALRDCRAALSVDPNDQEMLEL 880 (889)
Q Consensus 832 ~kal~~~p~~-~~l~l~a~~~~~~g~~~~A~~~~~~al~l~p~~~~~l~l 880 (889)
++++..+|+. ..+..+|.++..+|++++|++.|++|+++.|.+|.....
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHC
T ss_conf 99997599979999999999998699999999999998269899747655
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=246.92 Aligned_cols=349 Identities=15% Similarity=0.104 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 3899999885603998804489999999820689999999999984789-988999999999811219999999999997
Q 002716 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILT 540 (889)
Q Consensus 462 ~~A~~~l~~al~~dp~~~~a~~~la~~~~~~g~~~~Al~~l~kal~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~al~ 540 (889)
..+...+.+++..+|.++..+..+|..+...|++++|+..|++++...| +..++..+|.++...|++++|+..+++++.
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 44465642356653789999999999999879999999999999984971689999999999987997999999999984
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCH---HHHHHH-------
Q ss_conf 4999700243488999999999993235479899976321155554031899999984389875---899998-------
Q 002716 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG---VLYFRQ------- 610 (889)
Q Consensus 541 ~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~~~---~~~~~l------- 610 (889)
.+|++. .++..+|.++...|++++|...+ +++++.+|.+. ..+..+
T Consensus 89 ~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 89 LKMDFT------AARLQRGHLLLKQGKLDEAEDDF------------------KKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HCTTCH------HHHHHHHHHHHHTTCHHHHHHHH------------------HHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCH------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 498748------99999999999869999999999------------------999724999701688999999999999
Q ss_pred -----HHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf -----899998099889999999999809991999999889999558799999999999801888499999999999747
Q 002716 611 -----SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (889)
Q Consensus 611 -----a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~~~~ 685 (889)
|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|+..
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------- 211 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT------------- 211 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-------------
T ss_conf 9999999999868999999999999986889769999999999877999999999999998688987-------------
Q ss_pred CCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC--HHHHH------------HH
Q ss_conf 99876024666599983013310752599999899999739968999999998733853--59998------------99
Q 002716 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQG------------LA 751 (889)
Q Consensus 686 ~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~--~a~~~------------La 751 (889)
.++..+|.+|...|++++|+..|++++...|+ ..+.. +|
T Consensus 212 ---------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (450)
T 2y4t_A 212 ---------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264 (450)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------------------99999999999759999999999999875998089999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCHH----HHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999818999999999999998316999----9999981----3997899999989883499991899999999996799
Q 002716 752 RVHFLKNNKTTAYEEMTKLIKKARNNAS----AYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHK 823 (889)
Q Consensus 752 ~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~----~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~ 823 (889)
.++...|++++|+..++++++..|.+.. .+..++. .|++++|+..++++++.+|.+..++..+|.++...|+
T Consensus 265 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 344 (450)
T 2y4t_A 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM 344 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99987179999999999998508733689999999999999987889999999999988484548999999999987037
Q ss_pred HHHHHHHHHHHHHCCCCH-HHHHHHH------------HHHHHCC-----CHHHHHHHHHH-HHCCCCCC
Q ss_conf 899999999998437999-9999999------------9999809-----99999999999-88149999
Q 002716 824 ENEAIAELSRAIAFKADL-HLLHLRA------------AFHEHTG-----DVLGALRDCRA-ALSVDPND 874 (889)
Q Consensus 824 ~~eA~~~l~kal~~~p~~-~~l~l~a------------~~~~~~g-----~~~~A~~~~~~-al~l~p~~ 874 (889)
+++|+..++++++..|+. ..+...+ .+|..+| +.+++.+.|++ ++...|++
T Consensus 345 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 345 YDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999988593529999999999998643350569998189866898999999999999759897
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=244.53 Aligned_cols=393 Identities=14% Similarity=0.086 Sum_probs=281.7
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHCC
Q ss_conf 9985187987312799999999732409999999998136887123499999999999980860--25766889986508
Q 002716 352 SEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKG 429 (889)
Q Consensus 352 s~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~lG~~~~~~g~~~eA~~~~~~Al~~~~~--~~~~~la~~~~~~g 429 (889)
+..... ....+.++..+++++...++ ..++..+|.+++..|++++|+..|+++++.++. .....++.++...|
T Consensus 13 g~~~~~-~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 13 GNQFFR-NKKYDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHH-TSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HCCHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 789998-60278999999999855922----7899868899998854999999998776069378999998889999876
Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHH---HHHHC----CCHHHHHHHHHHH-------------------------------
Q ss_conf 807899998512311485204889---97510----8703899999885-------------------------------
Q 002716 430 HKLWAYEKLNSVISSVTPLGWMYQ---ERSLY----CEGDKRWEDLDKA------------------------------- 471 (889)
Q Consensus 430 ~~~~A~~~~~~~~~~~~~~g~~~~---~~~~~----~~~~~A~~~l~~a------------------------------- 471 (889)
++..|...+..++...+....... ..... ....+++..++.+
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 68889999999995598751137899999999999999999999899998766512677246788634478615899999
Q ss_pred ---HHC--------CCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHC-----C--C-------C-CHHHHHHHHHHH
Q ss_conf ---603--------99880448999999982---0689999999999984-----7--8-------9-988999999999
Q 002716 472 ---TAL--------DPTLSYPYMYRASSLMT---KQNVEAALAEINRILG-----F--K-------L-ALECLELRFCFF 522 (889)
Q Consensus 472 ---l~~--------dp~~~~a~~~la~~~~~---~g~~~~Al~~l~kal~-----~--~-------p-~~~~l~~~a~~~ 522 (889)
... .|++...++.+|..++. .|++++|+..+++++. . . | ....+..+|.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 86258788888725995888999989999876233229999999999998866542238100114827899999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 81121999999999999749997002434889999999999932354798999763211555540318999999843898
Q 002716 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (889)
Q Consensus 523 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~l~~~~~~~dd~~sl~~~~~al~~~p~ 602 (889)
...|++++|+..+++++..+|. . .++..+|.++...|++++|...+ .+++..+|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~-~------~~~~~l~~~~~~~~~~~~A~~~~------------------~~~~~~~~~ 302 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR-V------NSYIYMALIMADRNDSTEYYNYF------------------DKALKLDSN 302 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC-H------HHHHHHHHHHHTSSCCTTGGGHH------------------HHHHTTCTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-H------HHHHHHHHHHHHCCCHHHHHHHH------------------HHHHHCCCC
T ss_conf 9878999999999999863864-8------99999999999888899999999------------------998613867
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 75899998899998099889999999999809991999999889999558799999999999801888499999999999
Q 002716 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (889)
Q Consensus 603 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~a~~~la~~~~ 682 (889)
+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+.
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 371 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA----------- 371 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC-----------
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-----------
T ss_conf 789999999999980779999999999987385028999999999998689999999999999875467-----------
Q ss_pred HCCCCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH--------HHHHHHHHH
Q ss_conf 747998760246665999830133107525999998999997399689999999987338535--------999899999
Q 002716 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--------AHQGLARVH 754 (889)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~Al~~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~--------a~~~La~~~ 754 (889)
..++..+|.++...|++++|+..|++++...|.. ++..+|.++
T Consensus 372 -----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 372 -----------------------------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp -----------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf -----------------------------789999999998788999999999999976123321789999999999998
Q ss_pred HH---CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98---189999999999999983169999999981399789999998988349999189999999999679989999999
Q 002716 755 FL---KNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAVLMDSHKENEAIAEL 831 (889)
Q Consensus 755 ~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~A~~~l~~al~l~p~~~~~~~~la~~~~~~g~~~eA~~~l 831 (889)
.. .|++ ++|+..+++++..+|.+..++..+|.++...|++++|+..+
T Consensus 423 ~~~~~~~~~------------------------------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 423 TRNPTVENF------------------------------IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HTSCCTTHH------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCH------------------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 663325888------------------------------99999999998758555899999999999825799999999
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9998437999999
Q 002716 832 SRAIAFKADLHLL 844 (889)
Q Consensus 832 ~kal~~~p~~~~l 844 (889)
+++++..|+....
T Consensus 473 ~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 473 EESADLARTMEEK 485 (514)
T ss_dssp HHHHHHCSSHHHH
T ss_pred HHHHHHCCCCHHH
T ss_conf 9998766146889
Done!