Query 002717
Match_columns 888
No_of_seqs 551 out of 6131
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 17:18:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002717.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1436-1440//hhsearch_pdb/002717hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 505.0 36.9 360 124-490 294-752 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 458.7 37.6 457 5-478 83-552 (768)
3 3j0a_A TOLL-like receptor 5; m 1.0 1 1 444.2 33.9 459 3-482 8-565 (844)
4 3t6q_A CD180 antigen; protein- 1.0 1 1 437.2 34.4 467 1-480 35-563 (606)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 424.6 37.8 466 2-475 7-515 (680)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 419.2 37.6 463 2-479 15-538 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 418.3 35.5 466 2-482 14-563 (606)
8 2z63_A TOLL-like receptor 4, v 1.0 1 1 407.7 36.0 458 2-481 10-535 (570)
9 4gt4_A Tyrosine-protein kinase 1.0 1 1 406.5 24.2 261 600-878 27-305 (308)
10 1ziw_A TOLL-like receptor 3; i 1.0 1 1 406.3 40.3 468 1-481 27-626 (680)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=505.00 Aligned_cols=360 Identities=39% Similarity=0.581 Sum_probs=251.0
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHC--------
Q ss_conf 66768974785140007801338888889975686253107979-899999989976487367678900114--------
Q 002717 124 KRLRTLDLSHNLFSGSIPQGVAALHYLKELLLQGNQFSGPLPAD-IGFCPHLTTLDLSNNLFTGQLPVSLRL-------- 194 (888)
Q Consensus 124 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~-------- 194 (888)
++|++|+|++|.+.+..|..+..+++|++|++++|.+++..|.. +..+++|+.|++++|.+++..|..+..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 86889989689677842367755877667789788525737978872488887884847843762309898632277199
Q ss_pred -------------------CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf -------------------7998699903385645689674267766578944355677799778899998499950786
Q 002717 195 -------------------LNSMIFISVSNNTLTGDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRLRGNS 255 (888)
Q Consensus 195 -------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~ 255 (888)
+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..|..+..+++|+.|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 86278747876766653324776189897784654248777568987989895884668546777449988989897881
Q ss_pred CCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEECCCCCCC
Q ss_conf 777789200026-9964875568640148999999987733687799967899174558754440267957661698456
Q 002717 256 LNGNIPEGLFDL-GLEEIDLSENGFMGSIPPGSSSSSSSTLFQTLRILDLSSNNLVGDIPAEMGLFANLRYLNLSSNHLR 334 (888)
Q Consensus 256 l~~~~p~~~~~~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 334 (888)
+.+.+|..+... .|+.|++++|.+.+.+|.. +..+++|+.|++++|++++.+|.+++.+++|+.|++++|.++
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSG------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCCCHHHCCCCCCEEEEECCCCCCCCCCHH------HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 54718978828777329990199513758878------816998998975399518968768856899998989789433
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC------------------------------------------------
Q ss_conf 68999855678542999216833013791100------------------------------------------------
Q 002717 335 SRIPPELGYFHSLIHLDLRNNALYGSIPQEVC------------------------------------------------ 366 (888)
Q Consensus 335 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------------------------------------------ 366 (888)
+..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 74887770889899898988846882795786042122320134542111134443222233222100135563232002
Q ss_pred ----------------------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf ----------------------4589964874587687866701226665657983387032457824529799996983
Q 002717 367 ----------------------ESRSLGILQLDGNSLTGPIPQVIRNCTSLYLLSLSHNHLSGSIPKSISNLNKLKILKL 424 (888)
Q Consensus 367 ----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 424 (888)
.+++|+.|++++|+++|.+|..|+.++.|+.|+|++|+++|.+|..++.+++|+.|||
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 32110011331004627433403356657978588015558778841415787848688038878967847778998989
Q ss_pred CCCCCEECCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 388100027946215378992641588441118999989998977768986998999889988788
Q 002717 425 EFNELSGEIPQELGKLASLLAVNVSYNRLIGRLPVGGVFPTLDQSSLQGNLGICSPLLKGPCKMNV 490 (888)
Q Consensus 425 ~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~~~~~l~~~~~~~n~~~c~~~~~~~c~~~~ 490 (888)
++|+++|.+|..+..++.|+.||+++|+++|.+|..+.+..+...+|.||+++||+|+. +|....
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCC
T ss_conf 78802386886775788789787968815560899601024897775698321088776-788876
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=458.67 Aligned_cols=457 Identities=34% Similarity=0.486 Sum_probs=247.6
Q ss_pred CCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCC--HHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 42365343457-410148868675189955213780--000169899339975899886778612220498896898677
Q 002717 5 LVHGNSYNAIP-SMVVFRILERLNFSHNSLSGQIPP--SLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLSLAG 81 (888)
Q Consensus 5 ~~~~n~~~~~p-~~~~~~~l~~L~ls~n~l~~~~p~--~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~ 81 (888)
+++.|.+..+| .+..+++|+.|+|++|.+.+.+|. .+.++ ++|++|+|++|.+.+.+|...+.++++|++|++++
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC--SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC--TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCC--CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 7868886787033245788998989898578707896787278--89998989688267747977856388999898979
Q ss_pred CCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 1124444623---5689999999875764612358664534446666768974785140007801338888889975686
Q 002717 82 NILQGPIGKI---FNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGSIPQGVAALHYLKELLLQGN 158 (888)
Q Consensus 82 n~i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 158 (888)
|.+....... +..+++|++|+|++|.+....+ +..+++|++|+|++|.+.+..+. +..+++|++|++++|
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC------CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCC
T ss_conf 83588587155664358988989897880346578------45478689898928827887711-126999998979488
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCC
Q ss_conf 2531079798999999899764873676789001147998699903385645689674267-766578944355677799
Q 002717 159 QFSGPLPADIGFCPHLTTLDLSNNLFTGQLPVSLRLLNSMIFISVSNNTLTGDIPHWIGNI-STLEFLDFSNNHLTGSLP 237 (888)
Q Consensus 159 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~ 237 (888)
.+++..+..+..+++|+.|++++|.+.+..+.. .+++|+.|++++|++++.+|..+..+ ++|+.|++++|.+++..|
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 587816577744888898989888665716724--368789897917855772588888446868899896896778423
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCC-CCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCC
Q ss_conf 77889999849995078677778920-0026-996487556864014899999998773368-77999678991745587
Q 002717 238 SSLFNCKKLSVIRLRGNSLNGNIPEG-LFDL-GLEEIDLSENGFMGSIPPGSSSSSSSTLFQ-TLRILDLSSNNLVGDIP 314 (888)
Q Consensus 238 ~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~ 314 (888)
..+.++++|+.|++++|.+.+.+|.. +... .|+.|++++|.+.+.+|... ..++ +|+.|++++|.+.+..+
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l------~~l~~~L~~L~Ls~N~l~~~~~ 385 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL------TNLSASLLTLDLSSNNFSGPIL 385 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH------HHHTTTCSEEECCSSEEEEECC
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH------HHHHCCCCEEECCCCCCCCCCC
T ss_conf 6775587766778978852573797887248888788484784376230989------8632277199862787478767
Q ss_pred HHHHH--CCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 54440--2679576616984566899985567854299921683301379110045899648745876878667012266
Q 002717 315 AEMGL--FANLRYLNLSSNHLRSRIPPELGYFHSLIHLDLRNNALYGSIPQEVCESRSLGILQLDGNSLTGPIPQVIRNC 392 (888)
Q Consensus 315 ~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 392 (888)
..+.. +++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l 465 (768)
T 3rgz_A 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465 (768)
T ss_dssp TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred HHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCC
T ss_conf 66653324776189897784654248777568987989895884668546777449988989897881547189788287
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCEECCC-CCCCCCCCCCCCC
Q ss_conf 656579833870324578245297999969833881000279462153789926415884411189-9998999897776
Q 002717 393 TSLYLLSLSHNHLSGSIPKSISNLNKLKILKLEFNELSGEIPQELGKLASLLAVNVSYNRLIGRLP-VGGVFPTLDQSSL 471 (888)
Q Consensus 393 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p-~~~~~~~l~~~~~ 471 (888)
++|+.|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+| ..+.+..+..+++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEEC
T ss_conf 77329990199513758878816998998975399518968768856899998989789433748877708898998989
Q ss_pred CCCCCCC
Q ss_conf 8986998
Q 002717 472 QGNLGIC 478 (888)
Q Consensus 472 ~~n~~~c 478 (888)
.+|+..+
T Consensus 546 s~N~l~g 552 (768)
T 3rgz_A 546 NTNLFNG 552 (768)
T ss_dssp CSSEEES
T ss_pred CCCCCCC
T ss_conf 8884688
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=444.16 Aligned_cols=459 Identities=23% Similarity=0.219 Sum_probs=325.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
Q ss_conf 66423653434574101488686751899552137800001698993399758998867786122204988968986771
Q 002717 3 TPLVHGNSYNAIPSMVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLSLAGN 82 (888)
Q Consensus 3 ~~~~~~n~~~~~p~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~n 82 (888)
+.|++.++++.||. .+++++.|+|++|++.+..|.+|.++ ++|++|+|++|...+.+++..|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l--~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFL--EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSC--CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEECCCCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCC--CCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 89823799777898--99986888887786783296677662--137088678997744419778537877888879899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCC
Q ss_conf 12444462356899999998757646123586645344466667689747851400078-01338888889975686253
Q 002717 83 ILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGSIP-QGVAALHYLKELLLQGNQFS 161 (888)
Q Consensus 83 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 161 (888)
.|..+.++.|..+++|++|+|++|.++... .....|..+++|+.|+|++|.+.+..+ ..|..+++|++|++++|.++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAV--LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCC--STTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCC
T ss_conf 585319767157866587017678897340--467645566799988898786423256655763889898989898477
Q ss_pred CCCCCCCCCC--CC------------------------------CCEEECCCCCCCCCCCHHHHC---------------
Q ss_conf 1079798999--99------------------------------989976487367678900114---------------
Q 002717 162 GPLPADIGFC--PH------------------------------LTTLDLSNNLFTGQLPVSLRL--------------- 194 (888)
Q Consensus 162 ~~~~~~~~~l--~~------------------------------L~~L~L~~N~l~~~~~~~~~~--------------- 194 (888)
...+..+..+ ++ |+.|++++|.+....+..+..
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred EECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 66788753556775035789788666554553322377223574007965788686567788876427441001121212
Q ss_pred -----------------------CCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf -----------------------799869990338564568967426776657894435567779977889999849995
Q 002717 195 -----------------------LNSMIFISVSNNTLTGDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRL 251 (888)
Q Consensus 195 -----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 251 (888)
.++|+.|++++|.+....+..|..+++|+.|++++|.++...+..|.++++|+.|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred CCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 23466444566889855652555478618989799455158634525899999989798189879688368889998989
Q ss_pred ECCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEECCC
Q ss_conf 0786777789200026-996487556864014899999998773368779996789917455875444026795766169
Q 002717 252 RGNSLNGNIPEGLFDL-GLEEIDLSENGFMGSIPPGSSSSSSSTLFQTLRILDLSSNNLVGDIPAEMGLFANLRYLNLSS 330 (888)
Q Consensus 252 ~~N~l~~~~p~~~~~~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 330 (888)
++|.+.+..+..+... .|+.|++++|.+.+..+. .+..+++|+.|++++|.+++... +++|+.|++++
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~------~~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~ 390 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ------TFKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSG 390 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS------CSCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEES
T ss_pred CCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH------HHCCCCCCCEEECCCCCCCCCCC-----CCCCCHHCCCC
T ss_conf 89978851878846899999898989987762866------61378889998898997786168-----89823200589
Q ss_pred CCCCCCCCC---------------------CCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCC-----C
Q ss_conf 845668999---------------------855678542999216833013791-1004589964874587687-----8
Q 002717 331 NHLRSRIPP---------------------ELGYFHSLIHLDLRNNALYGSIPQ-EVCESRSLGILQLDGNSLT-----G 383 (888)
Q Consensus 331 n~l~~~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~-----~ 383 (888)
|.++..... .+..+++|+.|+|++|++.+..+. .+..+++|+.|++++|.++ +
T Consensus 391 N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97231455455431221456753457556665127766666677871255554333566873100247777364410135
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCEECCCCCCCC
Q ss_conf 66701226665657983387032457824529799996983388100027946215378992641588441118999989
Q 002717 384 PIPQVIRNCTSLYLLSLSHNHLSGSIPKSISNLNKLKILKLEFNELSGEIPQELGKLASLLAVNVSYNRLIGRLPVGGVF 463 (888)
Q Consensus 384 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~~~ 463 (888)
..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+| ..+
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~--~~~ 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP--DVF 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS--CCC
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCH--HHH
T ss_conf 5355544755365777889856553955704501221569999978745710110--045588898884788896--683
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 9989777689869989998
Q 002717 464 PTLDQSSLQGNLGICSPLL 482 (888)
Q Consensus 464 ~~l~~~~~~~n~~~c~~~~ 482 (888)
..+..+++.||++.|..+.
T Consensus 547 ~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 547 VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp SSCCEEEEEEECCCCSSSC
T ss_pred CCCCEEEECCCCCCCCCCC
T ss_conf 7768899319970253661
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=437.20 Aligned_cols=467 Identities=19% Similarity=0.189 Sum_probs=329.4
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEE
Q ss_conf 9766423653434574--10148868675189955213780000169899339975899886778612220498896898
Q 002717 1 MTTPLVHGNSYNAIPS--MVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLS 78 (888)
Q Consensus 1 ~~~~~~~~n~~~~~p~--~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 78 (888)
++.||+++|.++.+++ +..+++|+.|++++|++.+..|.+|.++ ++|++|+|++|++. .+++..|.++++|++|+
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--HRLDTLVLTANPLI-FMAETALSGPKALKHLF 111 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEEECTTCCCS-EECTTTTSSCTTCCEEE
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCC--CCCCEEECCCCCCC-CCCHHHHCCCCCCCEEE
T ss_conf 7589815873471796672567665289788983552485113684--33676448898565-45865523442153765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEECC
Q ss_conf 6771124444623568999999987576461235866453444666676897478514000780133888888--99756
Q 002717 79 LAGNILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGSIPQGVAALHYLK--ELLLQ 156 (888)
Q Consensus 79 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--~L~l~ 156 (888)
+++|.+..+....|..+++|++|+|++|+++.... ..+..+++|++|++++|.+....+..+..+.+|+ .|+++
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL----PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC----CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred CCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCC----CCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECC
T ss_conf 21267665781012237822389887983411476----54568765687776568445549656332215640389667
Q ss_pred CCCCCCCCCCCCCCC---------------------------------------------------CCCCEEECCCCCCC
Q ss_conf 862531079798999---------------------------------------------------99989976487367
Q 002717 157 GNQFSGPLPADIGFC---------------------------------------------------PHLTTLDLSNNLFT 185 (888)
Q Consensus 157 ~n~l~~~~~~~~~~l---------------------------------------------------~~L~~L~L~~N~l~ 185 (888)
+|.++...+..+... .+|+.|++++|.++
T Consensus 188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCC
T ss_conf 98147548667300100135567726677776513356442200201102641226866743032075059994457658
Q ss_pred CCCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC-
Q ss_conf 6789001147998699903385645689674267766578944355677799778899998499950786777789200-
Q 002717 186 GQLPVSLRLLNSMIFISVSNNTLTGDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRLRGNSLNGNIPEGL- 264 (888)
Q Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~- 264 (888)
.+.+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+.++...
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 557777445667888956288267-7782141654688897716876867602330157689888989974443462455
Q ss_pred CCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCCCC-CCC
Q ss_conf 026-996487556864014899999998773368779996789917455875444026795766169845668999-855
Q 002717 265 FDL-GLEEIDLSENGFMGSIPPGSSSSSSSTLFQTLRILDLSSNNLVGDIPAEMGLFANLRYLNLSSNHLRSRIPP-ELG 342 (888)
Q Consensus 265 ~~~-~L~~L~l~~n~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~ 342 (888)
... .|+.|++++|.+.+..+. ...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++...+. .+.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCC----NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEES----TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred HCCCCCCEEECCCCCCCCCCCC----CHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHH
T ss_conf 0667589887889966645675----221056788898989899677578887347745776878888677756521241
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 678542999216833013791100458996487458768786---67012266656579833870324578245297999
Q 002717 343 YFHSLIHLDLRNNALYGSIPQEVCESRSLGILQLDGNSLTGP---IPQVIRNCTSLYLLSLSHNHLSGSIPKSISNLNKL 419 (888)
Q Consensus 343 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 419 (888)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. .+..+..+++|+.|++++|++++..|..++.+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 76558889898985577687787378878889898998885434543124048876688799996670686463265678
Q ss_pred CEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCEECCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9698338810002794621537899264158844111899-998999897776898699899
Q 002717 420 KILKLEFNELSGEIPQELGKLASLLAVNVSYNRLIGRLPV-GGVFPTLDQSSLQGNLGICSP 480 (888)
Q Consensus 420 ~~L~l~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~ 480 (888)
+.|++++|++++..|..+..++.| .|++++|++++.+|. ...+..+..+++.||++.|..
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 889898980686896684756651-8987689414268766256778788967799861667
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=424.62 Aligned_cols=466 Identities=23% Similarity=0.224 Sum_probs=246.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 76642365343457410148868675189955213780000169899339975899886778612220498896898677
Q 002717 2 TTPLVHGNSYNAIPSMVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLSLAG 81 (888)
Q Consensus 2 ~~~~~~~n~~~~~p~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~ 81 (888)
+++|+++++++.+|... .++++.|++++|.+.+..+..|.++ ++|++|+|++|.+. .+++..|.++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRY--SQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGG--TTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCS
T ss_pred CEEECCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCHHHHHCC--CCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCC
T ss_conf 74487779805264124-8887688898997787597887178--76758878899648-56977874066768888999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 11244446235689999999875764612358664534446666768974785140007801338888889975686253
Q 002717 82 NILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGSIPQGVAALHYLKELLLQGNQFS 161 (888)
Q Consensus 82 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 161 (888)
|.+..++...|..+++|++|+|++|+++..+. ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS----CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH----HHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
T ss_conf 85675685453038888989898996685396----67415678888989899524667211124556777974588436
Q ss_pred CCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHCC---------------------------CCCCEEEEECCCCCCCC
Q ss_conf 10797989--99999899764873676789001147---------------------------99869990338564568
Q 002717 162 GPLPADIG--FCPHLTTLDLSNNLFTGQLPVSLRLL---------------------------NSMIFISVSNNTLTGDI 212 (888)
Q Consensus 162 ~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~ 212 (888)
...+..+. .+++|+.|++++|.++...+..+..+ ++|+.|++++|.+++..
T Consensus 159 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 159 ALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred CCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 52978862446663217988898256558155532234455430566468056777877753151008874577436468
Q ss_pred CCCCCCCCC--CCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCC-
Q ss_conf 967426776--6578944355677799778899998499950786777789200026-996487556864014899999-
Q 002717 213 PHWIGNIST--LEFLDFSNNHLTGSLPSSLFNCKKLSVIRLRGNSLNGNIPEGLFDL-GLEEIDLSENGFMGSIPPGSS- 288 (888)
Q Consensus 213 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~L~~L~l~~n~~~~~~p~~~~- 288 (888)
+..|.+++. |+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+... .|+.+++++|...+.++....
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCC
T ss_conf 66751467677888778788767568021167410568557788567658656267888557736331321333335545
Q ss_pred --CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCEEECCCCCCC--CCCCCCCCCC--CCCEEEECCCCCCCCCCC
Q ss_conf --9987733687799967899174558754440267957661698456--6899985567--854299921683301379
Q 002717 289 --SSSSSTLFQTLRILDLSSNNLVGDIPAEMGLFANLRYLNLSSNHLR--SRIPPELGYF--HSLIHLDLRNNALYGSIP 362 (888)
Q Consensus 289 --~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l--~~L~~L~L~~N~l~~~~~ 362 (888)
....+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+. ......+..+ +.|+.|++++|++.+..+
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECH
T ss_conf 43865624677788887989826878855740656872898879801443235322024556867668899997776775
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCE--ECCCCCCCC
Q ss_conf 110045899648745876878667-01226665657983387032457824529799996983388100--027946215
Q 002717 363 QEVCESRSLGILQLDGNSLTGPIP-QVIRNCTSLYLLSLSHNHLSGSIPKSISNLNKLKILKLEFNELS--GEIPQELGK 439 (888)
Q Consensus 363 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~--~~~p~~l~~ 439 (888)
..+..+++|+.|++++|.+++.++ ..|..+++|+.|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCC
T ss_conf 44207788888867787575435755325754612784489975422764550075431011014644225667764555
Q ss_pred CCCCCEEECCCCCCEECCCC-CCCCCCCCCCCCCCCC
Q ss_conf 37899264158844111899-9989998977768986
Q 002717 440 LASLLAVNVSYNRLIGRLPV-GGVFPTLDQSSLQGNL 475 (888)
Q Consensus 440 l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~ 475 (888)
+++|+.|++++|++++.+|. ...+..+..+++.+|.
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf 7878999899998776794463455346888588997
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=419.24 Aligned_cols=463 Identities=23% Similarity=0.190 Sum_probs=403.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 76642365343457410148868675189955213780000169899339975899886778612220498896898677
Q 002717 2 TTPLVHGNSYNAIPSMVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLSLAG 81 (888)
Q Consensus 2 ~~~~~~~n~~~~~p~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~ 81 (888)
+++++.+..++.+|. .....++.|++++|++.+..|.+|.++ ++|++|+|++|++. .+.+..|.++++|++|++++
T Consensus 15 ~~~~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRL--INLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTC--TTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHHHCCC--CCCEEEECCCCCCC-EECHHHCCCCCCCCEEECCC
T ss_conf 237777798062867-789867589815873471796672567--66528978898355-24851136843367644889
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 11244446235689999999875764612358664534446666768974785140007801338888889975686253
Q 002717 82 NILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGSIPQGVAALHYLKELLLQGNQFS 161 (888)
Q Consensus 82 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 161 (888)
|.+..+.+..|..+++|++|+|++|+++.... ..+..+++|++|++++|++.+.....+..+++|++|++++|.++
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDF----IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGG----SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCC----CHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 85654586552344215376521267665781----01223782238988798341147654568765687776568445
Q ss_pred CCCCCCCCCCCCCC--EEECCCCCCCCCCCHHHHCC--------------------------------------------
Q ss_conf 10797989999998--99764873676789001147--------------------------------------------
Q 002717 162 GPLPADIGFCPHLT--TLDLSNNLFTGQLPVSLRLL-------------------------------------------- 195 (888)
Q Consensus 162 ~~~~~~~~~l~~L~--~L~L~~N~l~~~~~~~~~~l-------------------------------------------- 195 (888)
...+..+..+++|+ .|++++|.++...+..+...
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred CCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHH
T ss_conf 54965633221564038966798147548667300100135567726677776513356442200201102641226866
Q ss_pred -------CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-
Q ss_conf -------998699903385645689674267766578944355677799778899998499950786777789200026-
Q 002717 196 -------NSMIFISVSNNTLTGDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRLRGNSLNGNIPEGLFDL- 267 (888)
Q Consensus 196 -------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~- 267 (888)
.+|+.|++++|.++...+..|..+++|+.|++++|.++ .+|..+.++++|+.|++++|.+.+..|..+...
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 743032075059994457658557777445667888956288267-7782141654688897716876867602330157
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 9964875568640148999999987733687799967899174558--75444026795766169845668999855678
Q 002717 268 GLEEIDLSENGFMGSIPPGSSSSSSSTLFQTLRILDLSSNNLVGDI--PAEMGLFANLRYLNLSSNHLRSRIPPELGYFH 345 (888)
Q Consensus 268 ~L~~L~l~~n~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 345 (888)
.|+.|++++|.+.+.+|... +..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 400 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGC-----LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400 (606)
T ss_dssp TCSEEECCSCSSCCBCCSST-----TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT
T ss_pred CCCEEECCCCCCCCCCCHHH-----HHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 68988898997444346245-----5066758988788996664567522105678889898989967757888734774
Q ss_pred CCEEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCCCCCCCCCE
Q ss_conf 5429992168330137911-00458996487458768786670122666565798338703245---7824529799996
Q 002717 346 SLIHLDLRNNALYGSIPQE-VCESRSLGILQLDGNSLTGPIPQVIRNCTSLYLLSLSHNHLSGS---IPKSISNLNKLKI 421 (888)
Q Consensus 346 ~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~ 421 (888)
+|+.|++++|++.+..+.. +..+++|+.|++++|.+++..|..+..+++|+.|++++|++.+. .+..+..+++|+.
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCE
T ss_conf 57768788886777565212417655888989898557768778737887888989899888543454312404887668
Q ss_pred EECCCCCCEECCCCCCCCCCCCCEEECCCCCCEECCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9833881000279462153789926415884411189-999899989777689869989
Q 002717 422 LKLEFNELSGEIPQELGKLASLLAVNVSYNRLIGRLP-VGGVFPTLDQSSLQGNLGICS 479 (888)
Q Consensus 422 L~l~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p-~~~~~~~l~~~~~~~n~~~c~ 479 (888)
|++++|.+++..|..+..+++|+.|++++|++++.+| ....+..+ .+++.+|.....
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCC
T ss_conf 8799996670686463265678889898980686896684756651-898768941426
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=418.35 Aligned_cols=466 Identities=21% Similarity=0.197 Sum_probs=319.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 76642365343457410148868675189955213780000169899339975899886778612220498896898677
Q 002717 2 TTPLVHGNSYNAIPSMVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLSLAG 81 (888)
Q Consensus 2 ~~~~~~~n~~~~~p~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~ 81 (888)
+++++++++++.+|.. ..++++.|++++|++.+..+.+|.++ ++|++|+|++|.+. .+++..|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNF--SELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred CCEECCCCCCCCCCCC-CCCCCCEEECCCCCCCEECHHHCCCC--CCCCEEECCCCCCC-CCCHHHHHCHHHCCEEECCC
T ss_conf 7057468884518988-88876788788897577375455577--66748868877366-43977730601068867879
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCC
Q ss_conf 112444462356899999998757646123586645344466667689747851400-0780133888888997568625
Q 002717 82 NILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSG-SIPQGVAALHYLKELLLQGNQF 160 (888)
Q Consensus 82 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 160 (888)
|.+..+.++.|..+++|++|+|++|.++..+. ..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLES----FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSS----SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC----CCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCC
T ss_conf 85630485220786537888703775554451----13489887798968788523253068673267777887668853
Q ss_pred CCCCCCCCCCCCCCC----EEECCCCCCCCCCCHHHHCCCCCCEEEEECCCCC---------------------------
Q ss_conf 310797989999998----9976487367678900114799869990338564---------------------------
Q 002717 161 SGPLPADIGFCPHLT----TLDLSNNLFTGQLPVSLRLLNSMIFISVSNNTLT--------------------------- 209 (888)
Q Consensus 161 ~~~~~~~~~~l~~L~----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------- 209 (888)
+...+..+..+.+|+ .|++++|.++.+.+..+... +|+.|++++|.+.
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred EECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 105733412120342002430046897532571105676-0433524678561667788860266565231411110367
Q ss_pred -------------------------------CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf -------------------------------5689674267766578944355677799778899998499950786777
Q 002717 210 -------------------------------GDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRLRGNSLNG 258 (888)
Q Consensus 210 -------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 258 (888)
+..+. +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+ +
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-S
T ss_pred CCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCC-C
T ss_conf 741026817766665434745012366555543222-3548878987714766044-35-433401177897646667-6
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCC------------------CCCCCCCCCCCCEEECCCCCCCCCCCHHHHHC
Q ss_conf 789200026996487556864014899999------------------99877336877999678991745587544402
Q 002717 259 NIPEGLFDLGLEEIDLSENGFMGSIPPGSS------------------SSSSSTLFQTLRILDLSSNNLVGDIPAEMGLF 320 (888)
Q Consensus 259 ~~p~~~~~~~L~~L~l~~n~~~~~~p~~~~------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 320 (888)
.+|.. ....|+.|++++|...+.++.... ....+..+++|+.|++++|.+.+ .|..+..+
T Consensus 321 ~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 321 QFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp SCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred CCCCC-CCCCCCEEECCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCC
T ss_conf 54667-88755644544786853100024898887977587368775201221467755486788995300-05540688
Q ss_pred CCCCEEECCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEE
Q ss_conf 679576616984566899-985567854299921683301379110045899648745876878-667012266656579
Q 002717 321 ANLRYLNLSSNHLRSRIP-PELGYFHSLIHLDLRNNALYGSIPQEVCESRSLGILQLDGNSLTG-PIPQVIRNCTSLYLL 398 (888)
Q Consensus 321 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 398 (888)
++|+.|++++|.+.+..+ ..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+++ ..|..|..+++|+.|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEE
T ss_conf 88896589887058753764564621378898968978743355534778789898989837985467760457889989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCEECCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 833870324578245297999969833881000279462153789926415884411189999899-9897776898699
Q 002717 399 SLSHNHLSGSIPKSISNLNKLKILKLEFNELSGEIPQELGKLASLLAVNVSYNRLIGRLPVGGVFP-TLDQSSLQGNLGI 477 (888)
Q Consensus 399 ~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~~~~~-~l~~~~~~~n~~~ 477 (888)
++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|+++..++....+. .+..+++.+|++.
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCC
T ss_conf 89888577648656154646898989899578748777068876898889898376668767521021748876289866
Q ss_pred CCCCC
Q ss_conf 89998
Q 002717 478 CSPLL 482 (888)
Q Consensus 478 c~~~~ 482 (888)
|..+.
T Consensus 559 c~c~~ 563 (606)
T 3vq2_A 559 CICEH 563 (606)
T ss_dssp CSSTT
T ss_pred CCCCC
T ss_conf 47764
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=407.66 Aligned_cols=458 Identities=21% Similarity=0.225 Sum_probs=396.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
Q ss_conf 76642365343457410148868675189955213780000169899339975899886778612220498896898677
Q 002717 2 TTPLVHGNSYNAIPSMVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLSLAG 81 (888)
Q Consensus 2 ~~~~~~~n~~~~~p~~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~L~~ 81 (888)
+++++++.+++.+|. .....++.|++++|++.+..+.+|.++ ++|++|+|++|++. .+++..|.++++|++|++++
T Consensus 10 ~~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSF--PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTC--SSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred CEEEECCCCCCCCCC-CCCCCCCEEECCCCCCCCCCHHHHHCC--CCCEEEECCCCCCC-CCCCCCCCCCHHCCEEECCC
T ss_conf 489807887561677-766556489765885473286574278--88629989899577-14821014802188876769
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCC
Q ss_conf 1124444623568999999987576461235866453444666676897478514000-780133888888997568625
Q 002717 82 NILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGS-IPQGVAALHYLKELLLQGNQF 160 (888)
Q Consensus 82 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l 160 (888)
|.+..++.+.|..+++|+.|+|++|.++..+.. .+..+++|++|++++|.+... .|..+..+++|++|++++|.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENF----PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCEEECCCCCCCEECCHHHHCCCCCCCEEECCCCCC
T ss_conf 957744975615750133231654662347876----6544555557756787422003704442468878786768701
Q ss_pred CCCCCCCCCCCCCC----CEEECCCCCCCCCCCHHHHCCCCCCEEEEECC------------------------------
Q ss_conf 31079798999999----89976487367678900114799869990338------------------------------
Q 002717 161 SGPLPADIGFCPHL----TTLDLSNNLFTGQLPVSLRLLNSMIFISVSNN------------------------------ 206 (888)
Q Consensus 161 ~~~~~~~~~~l~~L----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n------------------------------ 206 (888)
+...+..+..+.+| +.|++++|.++...+..+... +|+.|++++|
T Consensus 162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred CEECHHHCCCHHCCCHHHHHCCCCCCCCEECCHHHHCCC-CCEEEECCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 324678805631044143312357897532097780027-6116863356554320556652764130325511013671
Q ss_pred ----------------------------CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf ----------------------------5645689674267766578944355677799778899998499950786777
Q 002717 207 ----------------------------TLTGDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRLRGNSLNG 258 (888)
Q Consensus 207 ----------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~N~l~~ 258 (888)
.+.+..+..+..+++|+.|++++|.++ .++..+..+ +|+.|++++|.+.
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred HHHHHCCHHHHCCCCCCCHHHHHHHCCHHHHHHCHHHHCCCCCCCEEEECCCCCH-HHHHHHCCC-CCCEEEECCCCCC-
T ss_conf 2232145556535454543331131130354424344337676547870376410-012232027-7347860167403-
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CHHHHHCCCCCEEECCCCCCCCC
Q ss_conf 7892000269964875568640148999999987733687799967899174558--75444026795766169845668
Q 002717 259 NIPEGLFDLGLEEIDLSENGFMGSIPPGSSSSSSSTLFQTLRILDLSSNNLVGDI--PAEMGLFANLRYLNLSSNHLRSR 336 (888)
Q Consensus 259 ~~p~~~~~~~L~~L~l~~n~~~~~~p~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~ 336 (888)
.+|.. ....|+.+++++|.+.+.++. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+...
T Consensus 318 ~l~~~-~l~~L~~L~l~~n~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 388 (570)
T 2z63_A 318 QFPTL-KLKSLKRLTFTSNKGGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388 (570)
T ss_dssp SCCBC-BCSSCCEEEEESCBSCCBCCC--------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred CCCCC-CCCCCCEEECCCCCCCCCCCC--------CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 34733-266547876767756664454--------668877879676995675465443335567667798989965213
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCC
Q ss_conf 99985567854299921683301379-11004589964874587687866701226665657983387032-45782452
Q 002717 337 IPPELGYFHSLIHLDLRNNALYGSIP-QEVCESRSLGILQLDGNSLTGPIPQVIRNCTSLYLLSLSHNHLS-GSIPKSIS 414 (888)
Q Consensus 337 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~ 414 (888)
.+. +..+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|++. +.+|..+.
T Consensus 389 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 389 SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp EEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred CCC-CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 200-0256888789745886455643566604788888968698366642556636874748988698676554346663
Q ss_pred CCCCCCEEECCCCCCEECCCCCCCCCCCCCEEECCCCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 979999698338810002794621537899264158844111899-9989998977768986998999
Q 002717 415 NLNKLKILKLEFNELSGEIPQELGKLASLLAVNVSYNRLIGRLPV-GGVFPTLDQSSLQGNLGICSPL 481 (888)
Q Consensus 415 ~l~~L~~L~l~~N~l~~~~p~~l~~l~~L~~l~l~~N~l~~~~p~-~~~~~~l~~~~~~~n~~~c~~~ 481 (888)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+|. ...+..+..+++.+|++.|..+
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCC
T ss_conf 45678889799995264775566266688988698971798798996264577689814983057876
No 9
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=406.52 Aligned_cols=261 Identities=25% Similarity=0.355 Sum_probs=218.3
Q ss_pred HHHHCCEECCCCCEEEEEEEEC-----CCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
Q ss_conf 6541371111266089999989-----99929999993328866796899999999962489983303338982890169
Q 002717 600 LLEKAAEVGEGVFGTVYKVSFG-----TQGRMLAVKKLVTSDIIQYPEDFEREVRVLGKARHPNLISLEGYYWTPQLKLL 674 (888)
Q Consensus 600 ~~~~~~~ig~G~~g~Vy~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~g~~~~~~~~~l 674 (888)
.++..++||+|+||.||+|.+. .+++.||||++.........+.|.+|+.++++++|||||+++|+|.+++..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEECCCCCCHHHHHHHCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 99627999989999320999------------999994559999999999999743059999373678999678669999
Q 002717 675 VSDYAPNGSLQAKLHERLPS------------TPPLSWTNRFKVILGTAKGLAHLHHSFRPPIIHYNLKPSNILLDDNYN 742 (888)
Q Consensus 675 v~e~~~~gsL~~~l~~~~~~------------~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlk~~Nill~~~~~ 742 (888)
|||||++|+|.+++....+. ...++|..+..++.|+|+||+|||+. +|+||||||+|||+++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCCC
T ss_conf 9981899949999986276543333221111246899999999999999999999868---9977873623068879997
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHH
Q ss_conf 089202355312344643102533544554674355585788982018989999999980-9998978987345389999
Q 002717 743 PRISDFGLARLLTRLDKHVMSNRFQSALGYVAPELTCQSLRVNEKCDIYGFGVLILELVT-GRRPVEYGEDNVVILSEHV 821 (888)
Q Consensus 743 ~kl~Dfgla~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~sDv~S~Gvil~ellt-g~~p~~~~~~~~~~l~~~~ 821 (888)
+||+|||+|+.+...+.........||++|||||++ ....++.++|||||||++|||+| |+.||..... ..+...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l-~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~--~~~~~~- 259 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAI-MYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN--QDVVEM- 259 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHH-HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH--HHHHHH-
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHH-HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH--HHHHHH-
T ss_conf 898876020233677740473451257765698998-2799996300015799999999689999999899--999999-
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 999850974555699999999243999999999801799999999999999998301
Q 002717 822 RVLLEEGNVLDCVDPSMGDYPEDEVLPVLKLALVCTCHIPSSRPSMAEVVQILQVIK 878 (888)
Q Consensus 822 ~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~li~~c~~~dp~~RPs~~evl~~L~~~~ 878 (888)
+..+.. ...|..++..+.++|.+||+.||++||||.||+++|++..
T Consensus 260 ---i~~~~~--------~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 260 ---IRNRQV--------LPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp ---HHTTCC--------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred ---HHCCCC--------CCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf ---981998--------9996203699999999975879657929999999998531
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=406.26 Aligned_cols=468 Identities=23% Similarity=0.241 Sum_probs=246.8
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEE
Q ss_conf 9766423653434574--10148868675189955213780000169899339975899886778612220498896898
Q 002717 1 MTTPLVHGNSYNAIPS--MVVFRILERLNFSHNSLSGQIPPSLLNLNMMNMKFLDLSNNLLSGPVPYQLFENCASLRYLS 78 (888)
Q Consensus 1 ~~~~~~~~n~~~~~p~--~~~~~~l~~L~ls~n~l~~~~p~~~~~l~~~~L~~L~L~~n~i~~~l~~~~~~~l~~L~~L~ 78 (888)
++.|++++|.++.+|. +..+++|+.|++++|++.+..|.+|.++ ++|++|+|++|.+. .+|...|.++++|++|+
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL--PMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCC--CCCCEEECCCCCCC-CCCHHHHCCCCCCCEEE
T ss_conf 7688898997787597887178767588788996485697787406--67688889998567-56854530388889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCEEECC
Q ss_conf 6771124444623568999999987576461235866453444666676897478514000780133--88888899756
Q 002717 79 LAGNILQGPIGKIFNYCSSLNTLNLSNNHFSGDLDFASGYGIWSLKRLRTLDLSHNLFSGSIPQGVA--ALHYLKELLLQ 156 (888)
Q Consensus 79 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~l~ 156 (888)
+++|.+..++...|..+++|+.|+|++|.++..+. ..+..+++|++|++++|.++...+..+. .+++|++|+++
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL----GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC----CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC----HHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECC
T ss_conf 98996685396674156788889898995246672----11124556777974588436529788624466632179888
Q ss_pred CCCCCCCCCCCCCCC---------------------------CCCCEEECCCCCCCCCCCHHHHCCCC--CCEEEEECCC
Q ss_conf 862531079798999---------------------------99989976487367678900114799--8699903385
Q 002717 157 GNQFSGPLPADIGFC---------------------------PHLTTLDLSNNLFTGQLPVSLRLLNS--MIFISVSNNT 207 (888)
Q Consensus 157 ~n~l~~~~~~~~~~l---------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~n~ 207 (888)
+|.++...+..+..+ ++|+.|++++|.+.+..+..|..++. |+.|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCC
T ss_conf 98256558155532234455430566468056777877753151008874577436468667514676778887787887
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEE---------------------------------CC
Q ss_conf 645689674267766578944355677799778899998499950---------------------------------78
Q 002717 208 LTGDIPHWIGNISTLEFLDFSNNHLTGSLPSSLFNCKKLSVIRLR---------------------------------GN 254 (888)
Q Consensus 208 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~---------------------------------~N 254 (888)
+++..+..|..+++|+.|++++|.+++..+..+.++++|+.|+++ +|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf 67568021167410568557788567658656267888557736331321333335545438656246777888879898
Q ss_pred CCCCCCCCCCCCC-CCCEE----------------------------ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 6777789200026-99648----------------------------755686401489999999877336877999678
Q 002717 255 SLNGNIPEGLFDL-GLEEI----------------------------DLSENGFMGSIPPGSSSSSSSTLFQTLRILDLS 305 (888)
Q Consensus 255 ~l~~~~p~~~~~~-~L~~L----------------------------~l~~n~~~~~~p~~~~~~~~~~~l~~L~~L~Ls 305 (888)
.+.+..+..+... .|+.| ++++|.+.+..|.. +..+++|+.|+++
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA------FSWLGHLEVLDLG 413 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT------TTTCTTCCEEECC
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHH------HHCCCCCCEEECC
T ss_conf 2687885574065687289887980144323532202455686766889999777677544------2077888888677
Q ss_pred CCCCCCCCC-HHHHHCCCCCEEECCCCCCCCCC--------------------------CCCCCCCCCCEEEECCCCCCC
Q ss_conf 991745587-54440267957661698456689--------------------------998556785429992168330
Q 002717 306 SNNLVGDIP-AEMGLFANLRYLNLSSNHLRSRI--------------------------PPELGYFHSLIHLDLRNNALY 358 (888)
Q Consensus 306 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~l~~L~~L~L~~N~l~ 358 (888)
+|.+.+.++ ..+..+++|+.|++++|.+.... +..+..+++|+.|++++|++.
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 87575435755325754612784489975422764550075431011014644225667764555787899989999877
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCE
Q ss_conf 1379110045899648745876878667--------01226665657983387032457824529799996983388100
Q 002717 359 GSIPQEVCESRSLGILQLDGNSLTGPIP--------QVIRNCTSLYLLSLSHNHLSGSIPKSISNLNKLKILKLEFNELS 430 (888)
Q Consensus 359 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l~~N~l~ 430 (888)
+..+..+..+++|+.|++++|.+++..+ ..|..+++|+.|+|++|+++...+..|..+++|+.|++++|+++
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 67944634553468885889973000000046774142337998888889999788779777346667522389999777
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCEECCCCC-C-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 027946215378992641588441118999-9-89998977768986998999
Q 002717 431 GEIPQELGKLASLLAVNVSYNRLIGRLPVG-G-VFPTLDQSSLQGNLGICSPL 481 (888)
Q Consensus 431 ~~~p~~l~~l~~L~~l~l~~N~l~~~~p~~-~-~~~~l~~~~~~~n~~~c~~~ 481 (888)
+..+..+..+++|+.|++++|++++.+|.. + .+..+..+++.||+|.|.++
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 67976837898888898999968705966830114665779831897025776
Done!