Query 002718
Match_columns 888
No_of_seqs 779 out of 5038
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 05:44:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-118 4E-123 1064.0 84.8 740 141-884 49-791 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.2E-94 1.6E-98 852.9 73.2 674 41-720 46-727 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3.3E-88 7.1E-93 784.9 62.2 543 342-884 84-629 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.7E-67 5.9E-72 610.0 53.5 473 242-717 85-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 4E-67 8.8E-72 607.6 54.1 525 78-684 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.2E-66 2.6E-71 603.7 52.0 525 209-752 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-40 1.7E-44 401.0 78.5 754 45-815 55-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.7E-40 1E-44 403.0 75.8 751 46-812 125-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.6E-23 3.5E-28 255.9 64.8 349 454-816 359-743 (1157)
10 PRK11447 cellulose synthase su 100.0 4E-23 8.7E-28 252.4 62.7 663 49-779 31-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.3E-22 2.9E-27 235.4 56.4 620 126-812 58-738 (987)
12 PRK09782 bacteriophage N4 rece 99.9 2.6E-21 5.5E-26 224.8 55.3 677 51-801 47-760 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.2E-19 2.7E-24 185.4 35.3 378 415-804 116-509 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.7E-18 3.7E-23 177.1 33.0 355 445-811 115-482 (966)
15 KOG2002 TPR-containing nuclear 99.8 6.8E-16 1.5E-20 167.3 50.6 302 64-373 26-370 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.8 2E-17 4.2E-22 190.1 39.2 386 418-813 130-570 (615)
17 KOG4318 Bicoid mRNA stability 99.8 3E-16 6.4E-21 167.6 44.4 704 65-815 9-809 (1088)
18 KOG2002 TPR-containing nuclear 99.8 1.5E-15 3.3E-20 164.6 48.2 656 111-817 40-801 (1018)
19 PRK11788 tetratricopeptide rep 99.8 3.7E-17 8.1E-22 178.5 32.3 241 550-823 110-356 (389)
20 PRK15174 Vi polysaccharide exp 99.8 4.6E-16 9.9E-21 177.8 37.8 350 427-785 17-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 2.5E-15 5.3E-20 175.8 42.0 388 419-815 19-457 (765)
22 PRK11788 tetratricopeptide rep 99.8 7.6E-17 1.6E-21 176.1 26.5 282 456-745 45-344 (389)
23 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-15 9.1E-20 170.9 42.1 439 348-813 130-596 (615)
24 PRK15174 Vi polysaccharide exp 99.8 2.1E-15 4.5E-20 172.5 37.5 350 457-816 16-383 (656)
25 PRK10049 pgaA outer membrane p 99.8 1.3E-14 2.9E-19 169.7 43.5 365 417-788 51-464 (765)
26 KOG4422 Uncharacterized conser 99.7 8E-14 1.7E-18 137.3 35.5 341 143-528 116-480 (625)
27 PRK14574 hmsH outer membrane p 99.7 1.5E-13 3.3E-18 157.1 42.4 180 324-542 44-229 (822)
28 KOG0495 HAT repeat protein [RN 99.7 2.9E-11 6.4E-16 125.7 52.6 439 344-829 439-893 (913)
29 KOG4422 Uncharacterized conser 99.7 4.7E-13 1E-17 132.0 37.6 432 256-745 127-587 (625)
30 PRK14574 hmsH outer membrane p 99.7 3.3E-12 7.2E-17 146.3 45.9 409 319-788 73-521 (822)
31 KOG2076 RNA polymerase III tra 99.7 1.8E-11 4E-16 132.7 47.8 578 95-710 153-847 (895)
32 KOG2076 RNA polymerase III tra 99.7 3.4E-11 7.4E-16 130.6 48.6 609 192-809 153-890 (895)
33 KOG4318 Bicoid mRNA stability 99.6 1.1E-12 2.4E-17 140.8 35.5 79 140-231 22-101 (1088)
34 KOG0495 HAT repeat protein [RN 99.6 3.4E-10 7.5E-15 118.0 44.8 405 391-806 387-808 (913)
35 PF13429 TPR_15: Tetratricopep 99.6 8.1E-15 1.8E-19 151.0 10.5 253 554-811 15-274 (280)
36 KOG0547 Translocase of outer m 99.5 9.7E-12 2.1E-16 125.2 28.3 211 595-811 339-563 (606)
37 KOG2003 TPR repeat-containing 99.5 6.7E-11 1.4E-15 117.6 32.5 272 525-802 428-711 (840)
38 KOG1126 DNA-binding cell divis 99.5 3E-12 6.4E-17 134.5 21.4 273 531-812 334-618 (638)
39 KOG1155 Anaphase-promoting com 99.5 8.9E-11 1.9E-15 117.7 30.6 344 423-809 172-531 (559)
40 KOG1126 DNA-binding cell divis 99.5 3.9E-12 8.5E-17 133.6 20.4 276 496-783 334-623 (638)
41 KOG2003 TPR repeat-containing 99.5 8.3E-11 1.8E-15 116.9 27.7 268 456-765 429-708 (840)
42 KOG1155 Anaphase-promoting com 99.4 4E-10 8.6E-15 113.1 31.3 252 554-813 234-494 (559)
43 KOG0985 Vesicle coat protein c 99.4 2.7E-08 5.9E-13 108.7 44.3 640 86-811 486-1246(1666)
44 PRK10747 putative protoheme IX 99.4 1E-10 2.2E-15 126.2 26.4 254 491-781 128-391 (398)
45 TIGR00540 hemY_coli hemY prote 99.4 6.2E-10 1.3E-14 120.9 30.8 288 458-778 96-397 (409)
46 PRK10747 putative protoheme IX 99.4 1.9E-10 4.1E-15 124.1 26.3 244 558-811 129-387 (398)
47 KOG2047 mRNA splicing factor [ 99.4 2.5E-07 5.4E-12 97.1 46.5 444 214-710 103-613 (835)
48 KOG2047 mRNA splicing factor [ 99.3 4.6E-07 1E-11 95.1 47.5 306 417-774 389-717 (835)
49 PF13429 TPR_15: Tetratricopep 99.3 3.1E-12 6.8E-17 131.8 9.9 252 521-780 13-277 (280)
50 TIGR02521 type_IV_pilW type IV 99.3 1.6E-10 3.4E-15 116.3 21.9 195 617-813 31-231 (234)
51 TIGR00540 hemY_coli hemY prote 99.3 3.4E-10 7.3E-15 122.9 25.5 281 426-745 95-396 (409)
52 KOG1173 Anaphase-promoting com 99.3 3.2E-09 7E-14 109.6 30.3 248 557-811 254-515 (611)
53 KOG1915 Cell cycle control pro 99.3 8.9E-08 1.9E-12 96.7 39.4 393 412-811 171-622 (677)
54 KOG1915 Cell cycle control pro 99.3 1.2E-08 2.6E-13 102.7 30.8 418 428-858 86-540 (677)
55 KOG4162 Predicted calmodulin-b 99.3 4.9E-08 1.1E-12 104.8 35.9 397 409-813 317-782 (799)
56 KOG1174 Anaphase-promoting com 99.2 1.7E-07 3.7E-12 93.1 36.2 200 629-859 312-519 (564)
57 KOG1173 Anaphase-promoting com 99.2 2.1E-08 4.6E-13 103.7 31.2 274 450-763 248-534 (611)
58 KOG4162 Predicted calmodulin-b 99.2 1.2E-07 2.7E-12 101.8 36.8 441 308-786 317-789 (799)
59 KOG3616 Selective LIM binding 99.2 1E-05 2.2E-10 86.1 50.5 550 186-791 740-1366(1636)
60 KOG3616 Selective LIM binding 99.2 5.7E-07 1.2E-11 95.3 40.1 283 456-813 716-1023(1636)
61 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.6E-16 86.3 6.2 50 242-291 1-50 (50)
62 COG2956 Predicted N-acetylgluc 99.2 1.3E-08 2.9E-13 97.8 25.4 307 458-834 47-367 (389)
63 COG3071 HemY Uncharacterized e 99.2 1.5E-08 3.3E-13 100.6 26.4 281 459-778 97-388 (400)
64 KOG0547 Translocase of outer m 99.2 9.3E-08 2E-12 97.1 31.9 217 557-781 336-567 (606)
65 KOG0985 Vesicle coat protein c 99.2 2.2E-05 4.7E-10 86.8 51.9 584 115-745 609-1305(1666)
66 PF13041 PPR_2: PPR repeat fam 99.2 7.9E-11 1.7E-15 84.1 6.8 50 646-695 1-50 (50)
67 PRK11189 lipoprotein NlpI; Pro 99.2 2.9E-09 6.2E-14 109.8 20.6 211 596-815 40-266 (296)
68 COG2956 Predicted N-acetylgluc 99.1 5.1E-08 1.1E-12 93.9 25.9 281 428-745 48-344 (389)
69 KOG1840 Kinesin light chain [C 99.1 1.2E-08 2.5E-13 109.4 23.1 230 583-812 200-477 (508)
70 COG3071 HemY Uncharacterized e 99.1 2E-07 4.2E-12 93.0 28.8 286 494-812 97-388 (400)
71 PRK12370 invasion protein regu 99.1 1.5E-08 3.3E-13 114.5 24.3 241 563-813 277-534 (553)
72 COG3063 PilF Tfp pilus assembl 99.1 1.2E-08 2.6E-13 93.7 18.1 162 650-816 37-204 (250)
73 KOG3785 Uncharacterized conser 99.1 8.6E-07 1.9E-11 86.3 31.6 157 652-821 363-521 (557)
74 PRK12370 invasion protein regu 99.0 2.2E-08 4.8E-13 113.2 21.7 210 596-813 275-501 (553)
75 TIGR02521 type_IV_pilW type IV 99.0 5.9E-08 1.3E-12 97.4 22.6 200 548-782 32-234 (234)
76 KOG1127 TPR repeat-containing 99.0 8.3E-06 1.8E-10 90.3 39.4 354 433-796 801-1191(1238)
77 KOG2376 Signal recognition par 99.0 3.9E-06 8.5E-11 87.8 35.0 366 426-809 90-515 (652)
78 KOG1129 TPR repeat-containing 99.0 1.4E-08 3E-13 97.4 14.7 227 520-816 227-460 (478)
79 KOG1840 Kinesin light chain [C 98.9 8.9E-07 1.9E-11 95.1 29.1 236 517-780 200-479 (508)
80 KOG3785 Uncharacterized conser 98.9 1.5E-05 3.2E-10 78.0 34.0 190 622-816 290-492 (557)
81 KOG1174 Anaphase-promoting com 98.9 1.8E-05 3.9E-10 79.1 34.6 307 477-790 190-510 (564)
82 KOG2376 Signal recognition par 98.9 1E-05 2.2E-10 84.8 33.0 421 220-695 19-504 (652)
83 PRK11189 lipoprotein NlpI; Pro 98.9 4.6E-07 1E-11 93.5 23.5 229 561-797 40-283 (296)
84 KOG1156 N-terminal acetyltrans 98.8 5.4E-05 1.2E-09 80.4 36.5 443 290-779 18-510 (700)
85 KOG3617 WD40 and TPR repeat-co 98.8 2.6E-05 5.7E-10 84.4 34.5 246 91-373 738-995 (1416)
86 KOG3617 WD40 and TPR repeat-co 98.8 5.4E-05 1.2E-09 82.1 36.7 121 44-169 755-884 (1416)
87 COG3063 PilF Tfp pilus assembl 98.8 5.6E-07 1.2E-11 83.0 18.6 189 623-813 41-235 (250)
88 KOG1129 TPR repeat-containing 98.8 5.1E-07 1.1E-11 87.0 18.4 223 450-676 227-457 (478)
89 KOG1156 N-terminal acetyltrans 98.8 0.00013 2.9E-09 77.6 36.5 410 391-811 52-508 (700)
90 KOG1125 TPR repeat-containing 98.8 2E-07 4.3E-12 97.2 15.6 216 593-811 296-524 (579)
91 KOG0548 Molecular co-chaperone 98.8 9.3E-06 2E-10 84.3 27.3 214 586-813 228-454 (539)
92 KOG0624 dsRNA-activated protei 98.8 1.3E-05 2.7E-10 78.2 26.4 306 453-787 45-377 (504)
93 PF12569 NARP1: NMDA receptor- 98.7 6.7E-06 1.4E-10 89.7 27.8 124 685-811 196-331 (517)
94 KOG1127 TPR repeat-containing 98.7 0.0004 8.7E-09 77.5 40.5 355 446-810 775-1171(1238)
95 PF12569 NARP1: NMDA receptor- 98.7 8E-06 1.7E-10 89.1 27.7 122 654-780 200-334 (517)
96 PF04733 Coatomer_E: Coatomer 98.7 1E-06 2.2E-11 89.4 19.3 152 626-784 111-269 (290)
97 TIGR03302 OM_YfiO outer membra 98.7 1E-06 2.2E-11 88.3 19.3 60 756-815 171-233 (235)
98 PF04733 Coatomer_E: Coatomer 98.7 5E-07 1.1E-11 91.6 15.9 149 656-813 110-264 (290)
99 cd05804 StaR_like StaR_like; a 98.6 2.3E-05 5E-10 84.3 28.7 254 556-813 52-335 (355)
100 PRK15359 type III secretion sy 98.6 1.2E-06 2.7E-11 79.1 14.2 122 669-797 14-138 (144)
101 PF12854 PPR_1: PPR repeat 98.6 6.3E-08 1.4E-12 61.7 3.6 34 75-108 1-34 (34)
102 KOG4340 Uncharacterized conser 98.6 6E-05 1.3E-09 72.1 24.7 373 425-811 20-440 (459)
103 PRK04841 transcriptional regul 98.6 0.0052 1.1E-07 75.4 49.3 408 362-812 292-758 (903)
104 PLN02789 farnesyltranstransfer 98.5 1.5E-05 3.4E-10 81.9 20.8 163 633-799 88-269 (320)
105 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.4E-12 60.6 3.1 33 208-240 2-34 (34)
106 PRK10370 formate-dependent nit 98.5 1.1E-05 2.4E-10 77.2 17.9 147 655-815 23-174 (198)
107 KOG4340 Uncharacterized conser 98.4 8E-05 1.7E-09 71.3 22.0 310 116-442 14-337 (459)
108 cd05804 StaR_like StaR_like; a 98.4 0.00019 4.2E-09 77.1 28.4 263 549-814 8-293 (355)
109 KOG0548 Molecular co-chaperone 98.4 0.00011 2.4E-09 76.6 24.6 175 623-808 304-483 (539)
110 PRK15363 pathogenicity island 98.4 6.4E-06 1.4E-10 72.8 13.2 96 718-813 34-131 (157)
111 PRK15359 type III secretion sy 98.4 4.3E-06 9.3E-11 75.6 12.5 106 704-814 14-121 (144)
112 KOG1070 rRNA processing protei 98.4 2.7E-05 5.9E-10 89.4 20.6 197 616-816 1457-1665(1710)
113 PRK10370 formate-dependent nit 98.4 1.7E-05 3.8E-10 75.9 16.5 126 661-791 52-184 (198)
114 KOG1128 Uncharacterized conser 98.4 9.5E-05 2E-09 79.9 23.0 217 511-745 393-613 (777)
115 COG5010 TadD Flp pilus assembl 98.3 3.6E-05 7.9E-10 73.1 17.3 116 689-806 106-223 (257)
116 PLN02789 farnesyltranstransfer 98.3 5E-05 1.1E-09 78.2 19.0 178 629-811 49-247 (320)
117 KOG1070 rRNA processing protei 98.3 0.00011 2.5E-09 84.5 22.6 225 579-807 1455-1693(1710)
118 COG4783 Putative Zn-dependent 98.3 8.6E-05 1.9E-09 76.8 19.7 143 651-815 309-455 (484)
119 TIGR03302 OM_YfiO outer membra 98.3 3.2E-05 6.9E-10 77.5 16.4 161 621-783 37-235 (235)
120 KOG1125 TPR repeat-containing 98.3 9.7E-05 2.1E-09 77.7 19.8 211 495-710 299-525 (579)
121 PRK15179 Vi polysaccharide bio 98.3 5.5E-05 1.2E-09 86.0 19.8 138 645-787 83-224 (694)
122 KOG2053 Mitochondrial inherita 98.2 0.013 2.8E-07 65.5 36.5 161 584-749 438-609 (932)
123 KOG0624 dsRNA-activated protei 98.2 0.0026 5.5E-08 62.6 27.6 302 421-750 44-373 (504)
124 PRK04841 transcriptional regul 98.2 0.028 6.2E-07 69.0 44.5 222 490-711 500-759 (903)
125 COG4783 Putative Zn-dependent 98.2 0.00014 2.9E-09 75.3 19.6 175 632-812 252-435 (484)
126 PRK15179 Vi polysaccharide bio 98.2 0.00011 2.4E-09 83.5 21.1 143 613-759 82-230 (694)
127 TIGR02552 LcrH_SycD type III s 98.2 2.2E-05 4.7E-10 70.7 12.3 94 720-813 18-113 (135)
128 COG5010 TadD Flp pilus assembl 98.2 0.00011 2.3E-09 70.0 16.6 134 679-815 62-198 (257)
129 KOG1128 Uncharacterized conser 98.2 5E-05 1.1E-09 81.9 15.4 210 552-780 403-616 (777)
130 KOG1914 mRNA cleavage and poly 98.1 0.018 3.9E-07 60.6 35.5 171 563-735 347-526 (656)
131 PRK14720 transcript cleavage f 98.1 0.00025 5.4E-09 81.4 21.3 134 650-804 118-274 (906)
132 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.3E-09 66.2 14.1 115 670-788 5-122 (135)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.9E-05 1.5E-09 78.6 14.3 123 685-812 171-295 (395)
134 TIGR00756 PPR pentatricopeptid 98.0 7.6E-06 1.6E-10 53.2 4.2 35 245-279 1-35 (35)
135 KOG3060 Uncharacterized conser 98.0 0.00042 9.2E-09 65.3 16.0 178 630-811 25-217 (289)
136 TIGR00756 PPR pentatricopeptid 97.9 1.5E-05 3.3E-10 51.8 4.5 34 650-683 2-35 (35)
137 KOG3081 Vesicle coat complex C 97.9 0.0015 3.2E-08 62.2 18.1 85 627-712 147-236 (299)
138 PF14432 DYW_deaminase: DYW fa 97.9 1.1E-05 2.4E-10 68.7 3.7 45 821-877 2-48 (116)
139 PF09976 TPR_21: Tetratricopep 97.9 0.00033 7.2E-09 63.6 13.7 123 650-776 14-143 (145)
140 PF13812 PPR_3: Pentatricopept 97.9 2.4E-05 5.2E-10 50.4 4.3 33 245-277 2-34 (34)
141 KOG3060 Uncharacterized conser 97.9 0.0021 4.6E-08 60.7 18.4 193 594-790 24-230 (289)
142 KOG3081 Vesicle coat complex C 97.9 0.022 4.7E-07 54.6 25.0 147 657-813 117-270 (299)
143 PF09976 TPR_21: Tetratricopep 97.8 0.00093 2E-08 60.7 15.5 123 686-810 15-143 (145)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00027 5.8E-09 74.3 13.4 123 622-749 174-298 (395)
145 PF13812 PPR_3: Pentatricopept 97.8 3E-05 6.6E-10 49.9 4.1 33 649-681 2-34 (34)
146 KOG0550 Molecular chaperone (D 97.8 0.00031 6.6E-09 70.8 12.0 159 649-812 169-348 (486)
147 PF12895 Apc3: Anaphase-promot 97.8 3E-05 6.6E-10 62.7 4.3 78 732-810 2-83 (84)
148 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00042 9E-09 60.7 12.0 102 686-787 5-112 (119)
149 cd00189 TPR Tetratricopeptide 97.8 0.00026 5.6E-09 58.8 10.2 92 722-813 3-96 (100)
150 PF13414 TPR_11: TPR repeat; P 97.7 8.5E-05 1.8E-09 57.4 6.5 63 750-812 2-65 (69)
151 PRK14720 transcript cleavage f 97.7 0.0043 9.3E-08 71.6 22.3 37 445-483 30-66 (906)
152 PRK10153 DNA-binding transcrip 97.7 0.0015 3.2E-08 72.2 17.7 137 644-811 333-479 (517)
153 PRK02603 photosystem I assembl 97.7 0.0012 2.5E-08 62.1 14.7 129 648-800 35-166 (172)
154 KOG1914 mRNA cleavage and poly 97.7 0.1 2.3E-06 55.2 34.7 160 649-811 367-536 (656)
155 KOG0553 TPR repeat-containing 97.7 0.00037 8.1E-09 67.7 11.1 99 690-791 88-189 (304)
156 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00045 9.8E-09 60.4 11.1 96 720-815 3-106 (119)
157 PLN03088 SGT1, suppressor of 97.7 0.00055 1.2E-08 72.5 13.5 102 690-794 9-113 (356)
158 PF13432 TPR_16: Tetratricopep 97.6 0.00013 2.8E-09 55.6 5.7 57 757-813 3-59 (65)
159 PF01535 PPR: PPR repeat; Int 97.6 6.5E-05 1.4E-09 47.1 3.4 31 245-275 1-31 (31)
160 KOG0553 TPR repeat-containing 97.6 0.00067 1.4E-08 66.0 11.3 98 657-759 90-190 (304)
161 COG4235 Cytochrome c biogenesi 97.6 0.00037 8E-09 68.3 9.1 105 718-822 155-264 (287)
162 PF01535 PPR: PPR repeat; Int 97.5 9.7E-05 2.1E-09 46.3 3.2 31 649-679 1-31 (31)
163 PRK02603 photosystem I assembl 97.5 0.0011 2.5E-08 62.2 11.4 49 752-800 73-121 (172)
164 COG4700 Uncharacterized protei 97.5 0.0085 1.8E-07 53.8 15.6 132 679-812 85-220 (251)
165 CHL00033 ycf3 photosystem I as 97.5 0.00089 1.9E-08 62.7 10.4 91 719-809 35-137 (168)
166 PF13431 TPR_17: Tetratricopep 97.5 7.7E-05 1.7E-09 47.5 2.2 32 774-805 2-33 (34)
167 PLN03088 SGT1, suppressor of 97.5 0.0015 3.2E-08 69.2 13.1 103 654-761 8-113 (356)
168 PRK15331 chaperone protein Sic 97.4 0.0013 2.8E-08 58.7 9.9 91 723-813 41-133 (165)
169 PF05843 Suf: Suppressor of fo 97.4 0.0062 1.3E-07 62.1 16.2 136 649-787 2-143 (280)
170 PRK10866 outer membrane biogen 97.4 0.011 2.4E-07 58.7 17.4 157 655-813 39-240 (243)
171 PF04840 Vps16_C: Vps16, C-ter 97.4 0.23 4.9E-06 51.4 27.8 107 621-744 181-287 (319)
172 cd00189 TPR Tetratricopeptide 97.4 0.002 4.3E-08 53.3 10.4 58 651-710 3-61 (100)
173 KOG2041 WD40 repeat protein [G 97.3 0.1 2.2E-06 56.7 24.2 76 420-505 827-902 (1189)
174 PF13432 TPR_16: Tetratricopep 97.3 0.00064 1.4E-08 51.7 6.2 61 725-785 3-65 (65)
175 KOG2053 Mitochondrial inherita 97.3 0.47 1E-05 53.7 40.1 110 290-403 20-133 (932)
176 CHL00033 ycf3 photosystem I as 97.3 0.0056 1.2E-07 57.3 13.5 122 649-801 36-167 (168)
177 PRK15363 pathogenicity island 97.3 0.0056 1.2E-07 54.4 12.4 91 648-743 35-127 (157)
178 PF14559 TPR_19: Tetratricopep 97.3 0.00037 8.1E-09 53.6 4.3 52 762-813 2-53 (68)
179 PF13371 TPR_9: Tetratricopept 97.2 0.00094 2E-08 52.2 6.5 56 759-814 3-58 (73)
180 PF12895 Apc3: Anaphase-promot 97.2 0.00088 1.9E-08 54.1 6.1 78 661-744 2-83 (84)
181 PF14559 TPR_19: Tetratricopep 97.2 0.00048 1E-08 53.0 4.3 62 731-792 3-66 (68)
182 PF07079 DUF1347: Protein of u 97.2 0.41 8.9E-06 49.8 39.0 73 738-811 443-521 (549)
183 KOG2041 WD40 repeat protein [G 97.2 0.42 9.1E-06 52.2 26.5 56 512-572 848-903 (1189)
184 COG4700 Uncharacterized protei 97.1 0.011 2.5E-07 53.0 12.3 105 709-813 79-188 (251)
185 PF04840 Vps16_C: Vps16, C-ter 97.1 0.41 9E-06 49.5 25.4 106 418-539 180-285 (319)
186 PRK10153 DNA-binding transcrip 97.0 0.017 3.7E-07 64.1 16.1 50 766-815 399-450 (517)
187 PF12688 TPR_5: Tetratrico pep 97.0 0.016 3.5E-07 49.8 11.8 91 654-744 7-100 (120)
188 PF14938 SNAP: Soluble NSF att 97.0 0.053 1.1E-06 55.7 17.9 108 626-745 103-222 (282)
189 PRK10803 tol-pal system protei 96.9 0.022 4.8E-07 56.9 14.3 103 651-786 146-252 (263)
190 PF13414 TPR_11: TPR repeat; P 96.9 0.0022 4.8E-08 49.4 5.8 64 719-782 3-69 (69)
191 KOG1130 Predicted G-alpha GTPa 96.9 0.009 1.9E-07 60.4 11.0 126 685-810 197-340 (639)
192 PF12688 TPR_5: Tetratrico pep 96.9 0.014 3E-07 50.2 10.7 83 726-808 8-98 (120)
193 PF13428 TPR_14: Tetratricopep 96.9 0.0019 4.1E-08 44.2 4.3 42 752-793 2-43 (44)
194 PF14938 SNAP: Soluble NSF att 96.8 0.73 1.6E-05 47.3 28.4 97 650-746 157-264 (282)
195 KOG1538 Uncharacterized conser 96.8 0.28 6.1E-06 52.9 21.6 201 485-750 602-805 (1081)
196 KOG2280 Vacuolar assembly/sort 96.8 1.2 2.6E-05 49.6 28.4 109 620-744 687-795 (829)
197 PRK10803 tol-pal system protei 96.8 0.0083 1.8E-07 60.0 10.2 92 722-813 146-245 (263)
198 COG3898 Uncharacterized membra 96.8 0.81 1.7E-05 46.7 27.7 269 529-809 97-387 (531)
199 PF13371 TPR_9: Tetratricopept 96.7 0.005 1.1E-07 48.0 6.5 66 727-792 3-70 (73)
200 PF10037 MRP-S27: Mitochondria 96.7 0.017 3.6E-07 61.3 12.0 112 418-529 69-186 (429)
201 COG4105 ComL DNA uptake lipopr 96.7 0.61 1.3E-05 45.3 21.1 161 651-814 37-233 (254)
202 PF05843 Suf: Suppressor of fo 96.7 0.015 3.3E-07 59.3 11.3 129 684-814 2-136 (280)
203 PRK10866 outer membrane biogen 96.7 0.3 6.5E-06 48.5 20.0 54 523-576 39-98 (243)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0074 1.6E-07 63.2 8.8 64 750-813 74-140 (453)
205 PF10037 MRP-S27: Mitochondria 96.6 0.016 3.5E-07 61.4 11.1 117 211-327 64-186 (429)
206 PF08579 RPM2: Mitochondrial r 96.6 0.047 1E-06 45.0 11.1 81 650-731 27-116 (120)
207 PF13525 YfiO: Outer membrane 96.6 0.15 3.3E-06 49.2 16.9 151 653-805 10-198 (203)
208 PF03704 BTAD: Bacterial trans 96.5 0.052 1.1E-06 49.4 12.7 107 692-812 15-123 (146)
209 KOG0550 Molecular chaperone (D 96.5 0.5 1.1E-05 48.6 20.0 147 656-807 257-436 (486)
210 PF08579 RPM2: Mitochondrial r 96.5 0.028 6.1E-07 46.3 9.3 81 246-326 27-116 (120)
211 PF06239 ECSIT: Evolutionarily 96.5 0.029 6.3E-07 52.4 10.4 98 637-735 34-154 (228)
212 KOG0543 FKBP-type peptidyl-pro 96.5 0.033 7.1E-07 57.1 11.7 127 689-860 214-340 (397)
213 KOG4555 TPR repeat-containing 96.5 0.02 4.3E-07 48.1 8.3 89 727-815 51-145 (175)
214 KOG1538 Uncharacterized conser 96.4 0.36 7.9E-06 52.2 19.3 22 656-677 825-846 (1081)
215 KOG2114 Vacuolar assembly/sort 96.3 1.9 4.1E-05 48.7 24.8 144 216-367 337-485 (933)
216 PF13281 DUF4071: Domain of un 96.3 0.44 9.5E-06 49.7 19.1 156 627-785 151-339 (374)
217 PF06239 ECSIT: Evolutionarily 96.3 0.058 1.2E-06 50.6 11.3 104 580-698 45-153 (228)
218 COG0457 NrfG FOG: TPR repeat [ 96.2 1.5 3.3E-05 43.2 25.7 193 617-813 59-264 (291)
219 COG3898 Uncharacterized membra 96.2 1.9 4.1E-05 44.2 24.4 254 478-745 115-389 (531)
220 PRK11906 transcriptional regul 96.1 0.34 7.3E-06 51.3 17.3 143 664-809 274-431 (458)
221 COG3118 Thioredoxin domain-con 96.1 0.69 1.5E-05 45.7 17.9 174 635-811 121-299 (304)
222 KOG2796 Uncharacterized conser 96.0 0.23 5.1E-06 47.6 14.0 134 550-685 180-321 (366)
223 COG4235 Cytochrome c biogenesi 96.0 0.33 7.1E-06 48.2 15.5 105 680-786 152-262 (287)
224 PF13525 YfiO: Outer membrane 95.9 0.59 1.3E-05 45.1 17.3 129 685-813 7-169 (203)
225 PF03704 BTAD: Bacterial trans 95.8 0.074 1.6E-06 48.3 9.9 72 649-722 63-139 (146)
226 KOG2796 Uncharacterized conser 95.7 0.4 8.6E-06 46.0 14.1 139 650-788 179-323 (366)
227 COG5107 RNA14 Pre-mRNA 3'-end 95.7 3.3 7.1E-05 43.3 31.2 68 210-277 39-109 (660)
228 PRK11906 transcriptional regul 95.7 0.16 3.6E-06 53.6 12.8 124 687-810 257-397 (458)
229 PF13424 TPR_12: Tetratricopep 95.7 0.02 4.2E-07 45.4 4.9 58 753-810 7-71 (78)
230 KOG2066 Vacuolar assembly/sort 95.6 2.7 5.8E-05 47.2 21.9 74 417-493 394-467 (846)
231 KOG2280 Vacuolar assembly/sort 95.6 5 0.00011 45.0 30.2 328 449-809 440-794 (829)
232 PF09205 DUF1955: Domain of un 95.6 1 2.2E-05 38.4 14.4 141 658-817 12-152 (161)
233 PF13424 TPR_12: Tetratricopep 95.5 0.022 4.7E-07 45.1 4.6 27 684-710 6-32 (78)
234 PF04184 ST7: ST7 protein; In 95.5 1.4 3E-05 47.0 18.2 97 688-784 264-379 (539)
235 KOG4234 TPR repeat-containing 95.4 0.1 2.2E-06 47.8 8.7 91 726-816 102-199 (271)
236 KOG1130 Predicted G-alpha GTPa 95.3 1.7 3.7E-05 44.7 17.6 241 454-709 25-301 (639)
237 COG0457 NrfG FOG: TPR repeat [ 95.2 3.4 7.4E-05 40.6 23.7 156 623-783 101-268 (291)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.65 1.4E-05 49.2 15.0 66 645-712 72-141 (453)
239 PF13512 TPR_18: Tetratricopep 95.1 0.44 9.6E-06 41.9 11.4 72 729-800 20-99 (142)
240 PF12921 ATP13: Mitochondrial 95.1 0.2 4.3E-06 43.6 9.4 48 714-761 47-98 (126)
241 KOG0543 FKBP-type peptidyl-pro 95.0 0.23 4.9E-06 51.2 10.9 139 654-814 214-355 (397)
242 COG4785 NlpI Lipoprotein NlpI, 95.0 0.91 2E-05 42.4 13.5 180 627-813 75-265 (297)
243 COG4105 ComL DNA uptake lipopr 95.0 3.4 7.4E-05 40.3 18.0 124 690-813 41-195 (254)
244 PF07719 TPR_2: Tetratricopept 94.8 0.082 1.8E-06 33.5 4.9 33 752-784 2-34 (34)
245 PF13512 TPR_18: Tetratricopep 94.8 0.86 1.9E-05 40.1 12.3 118 651-786 13-134 (142)
246 PF00515 TPR_1: Tetratricopept 94.7 0.069 1.5E-06 33.9 4.2 33 752-784 2-34 (34)
247 KOG1941 Acetylcholine receptor 94.6 0.64 1.4E-05 46.8 12.5 46 558-603 17-64 (518)
248 PF12921 ATP13: Mitochondrial 94.5 0.47 1E-05 41.3 10.3 52 678-729 47-98 (126)
249 COG1729 Uncharacterized protei 94.5 0.3 6.5E-06 47.8 10.0 93 650-745 144-241 (262)
250 PRK15331 chaperone protein Sic 94.5 1.2 2.5E-05 40.3 12.8 85 657-745 46-131 (165)
251 PF07079 DUF1347: Protein of u 94.4 8.1 0.00017 40.8 35.2 58 658-723 472-529 (549)
252 KOG3941 Intermediate in Toll s 94.2 0.37 8E-06 46.7 9.5 109 636-745 53-185 (406)
253 COG3118 Thioredoxin domain-con 93.9 1.8 3.8E-05 43.0 13.7 119 691-812 142-264 (304)
254 COG1729 Uncharacterized protei 93.9 1.1 2.5E-05 43.9 12.4 102 685-787 144-251 (262)
255 smart00299 CLH Clathrin heavy 93.6 1.7 3.6E-05 39.0 12.7 94 649-762 42-136 (140)
256 KOG4555 TPR repeat-containing 93.4 1.4 3.1E-05 37.5 10.3 86 657-744 52-140 (175)
257 PF10300 DUF3808: Protein of u 93.0 0.95 2.1E-05 50.0 11.9 192 651-857 191-401 (468)
258 smart00299 CLH Clathrin heavy 92.9 6.6 0.00014 35.1 15.5 126 651-796 10-136 (140)
259 PF04053 Coatomer_WDAD: Coatom 92.9 1.4 3.1E-05 47.9 12.7 103 422-541 325-427 (443)
260 KOG2114 Vacuolar assembly/sort 92.9 21 0.00046 40.8 29.1 116 320-442 340-458 (933)
261 PF04053 Coatomer_WDAD: Coatom 92.6 1.8 4E-05 47.0 13.1 133 656-815 269-403 (443)
262 KOG1585 Protein required for f 92.5 8.1 0.00018 37.2 15.1 197 588-809 37-251 (308)
263 KOG4648 Uncharacterized conser 92.4 0.48 1E-05 47.2 7.4 95 689-786 103-200 (536)
264 KOG1920 IkappaB kinase complex 92.4 30 0.00065 41.4 22.5 136 628-774 919-1062(1265)
265 KOG2610 Uncharacterized conser 92.1 4 8.7E-05 41.0 13.2 174 630-808 116-309 (491)
266 PF13281 DUF4071: Domain of un 92.0 11 0.00023 39.8 17.0 72 521-592 146-227 (374)
267 PF02259 FAT: FAT domain; Int 91.9 20 0.00043 38.2 20.9 147 646-798 144-305 (352)
268 KOG1941 Acetylcholine receptor 91.8 4.5 9.7E-05 41.1 13.3 128 653-780 127-275 (518)
269 KOG1920 IkappaB kinase complex 91.8 35 0.00076 40.9 23.6 94 421-543 958-1053(1265)
270 PF09613 HrpB1_HrpK: Bacterial 91.7 5.7 0.00012 35.8 12.7 88 692-782 19-108 (160)
271 PF13428 TPR_14: Tetratricopep 91.7 0.52 1.1E-05 32.1 5.0 32 650-683 3-34 (44)
272 PRK09687 putative lyase; Provi 91.6 18 0.00038 36.9 24.8 85 666-761 192-277 (280)
273 KOG4279 Serine/threonine prote 91.4 5 0.00011 44.7 14.3 191 550-794 204-409 (1226)
274 PF00637 Clathrin: Region in C 91.2 0.073 1.6E-06 48.1 0.5 85 285-372 13-97 (143)
275 COG3629 DnrI DNA-binding trans 91.1 2.1 4.6E-05 42.7 10.5 77 649-727 154-235 (280)
276 PRK11619 lytic murein transgly 91.0 35 0.00076 39.5 28.8 113 662-777 255-372 (644)
277 PRK12798 chemotaxis protein; R 91.0 23 0.00051 37.4 20.2 176 630-808 125-318 (421)
278 KOG2610 Uncharacterized conser 91.0 2.1 4.5E-05 42.9 10.0 159 659-821 114-283 (491)
279 PF04184 ST7: ST7 protein; In 91.0 3.2 7E-05 44.3 12.0 189 660-866 180-381 (539)
280 PF13181 TPR_8: Tetratricopept 90.9 0.45 9.7E-06 30.0 3.9 31 753-783 3-33 (34)
281 KOG3941 Intermediate in Toll s 90.9 1.3 2.8E-05 43.1 8.4 99 433-531 52-173 (406)
282 KOG4648 Uncharacterized conser 90.7 0.96 2.1E-05 45.2 7.5 90 654-754 103-201 (536)
283 KOG1258 mRNA processing protei 90.6 31 0.00068 38.1 28.1 183 617-802 297-492 (577)
284 PF13176 TPR_7: Tetratricopept 90.5 0.37 8.1E-06 31.0 3.2 25 787-811 1-25 (36)
285 PF10300 DUF3808: Protein of u 90.3 11 0.00023 41.8 16.3 147 619-767 190-356 (468)
286 COG4649 Uncharacterized protei 90.2 14 0.0003 33.6 15.9 121 658-779 68-195 (221)
287 PF09613 HrpB1_HrpK: Bacterial 90.1 2.1 4.5E-05 38.5 8.5 71 731-801 22-94 (160)
288 KOG1585 Protein required for f 89.6 8.9 0.00019 36.9 12.5 140 623-775 97-251 (308)
289 PF00637 Clathrin: Region in C 89.5 0.37 8.1E-06 43.5 3.7 87 51-140 12-98 (143)
290 PF13176 TPR_7: Tetratricopept 89.4 0.66 1.4E-05 29.8 3.7 28 753-780 1-28 (36)
291 COG2976 Uncharacterized protei 89.4 19 0.0004 33.7 14.7 114 666-783 70-191 (207)
292 COG5107 RNA14 Pre-mRNA 3'-end 89.1 33 0.00072 36.3 30.8 143 646-792 395-543 (660)
293 TIGR02561 HrpB1_HrpK type III 88.9 2.7 5.7E-05 37.2 8.0 51 764-814 23-73 (153)
294 PF09205 DUF1955: Domain of un 88.4 16 0.00034 31.6 13.4 63 550-613 89-151 (161)
295 KOG1586 Protein required for f 88.4 20 0.00044 34.4 13.8 150 626-787 23-190 (288)
296 KOG1464 COP9 signalosome, subu 88.2 27 0.00059 34.1 18.7 241 529-780 40-328 (440)
297 KOG1258 mRNA processing protei 88.0 48 0.001 36.7 26.6 122 683-806 297-421 (577)
298 PF00515 TPR_1: Tetratricopept 87.8 1.3 2.8E-05 27.9 4.3 31 650-682 3-33 (34)
299 PF04097 Nic96: Nup93/Nic96; 87.5 62 0.0013 37.4 21.5 21 729-749 515-535 (613)
300 PRK09687 putative lyase; Provi 87.4 36 0.00079 34.7 24.3 74 413-491 204-277 (280)
301 PF07035 Mic1: Colon cancer-as 87.1 24 0.00053 32.4 14.4 21 421-441 95-115 (167)
302 PRK10941 hypothetical protein; 87.0 4.4 9.5E-05 40.7 9.6 60 754-813 184-243 (269)
303 PF13431 TPR_17: Tetratricopep 86.9 0.73 1.6E-05 29.2 2.6 25 679-703 8-33 (34)
304 COG3947 Response regulator con 86.4 37 0.00081 33.8 15.4 55 759-813 287-341 (361)
305 COG4649 Uncharacterized protei 85.8 9.4 0.0002 34.6 9.7 49 527-575 143-195 (221)
306 PF14853 Fis1_TPR_C: Fis1 C-te 85.8 2.1 4.6E-05 30.4 4.7 35 757-791 7-41 (53)
307 KOG4234 TPR repeat-containing 85.7 11 0.00024 35.0 10.3 35 760-794 177-211 (271)
308 TIGR02508 type_III_yscG type I 85.0 16 0.00034 29.8 9.5 88 193-284 20-107 (115)
309 COG3629 DnrI DNA-binding trans 84.5 4.5 9.7E-05 40.5 8.1 61 753-813 155-215 (280)
310 PF13170 DUF4003: Protein of u 84.5 16 0.00034 37.5 12.3 135 564-729 79-227 (297)
311 PF07719 TPR_2: Tetratricopept 83.7 2.7 5.9E-05 26.2 4.3 27 650-676 3-29 (34)
312 PF06552 TOM20_plant: Plant sp 83.1 6.7 0.00014 36.0 7.8 34 767-800 51-84 (186)
313 PF11207 DUF2989: Protein of u 83.0 6.4 0.00014 37.0 7.9 74 730-804 118-197 (203)
314 PF07721 TPR_4: Tetratricopept 82.9 1.8 4E-05 25.3 2.9 24 786-809 2-25 (26)
315 PF13174 TPR_6: Tetratricopept 82.6 2.9 6.4E-05 25.8 4.1 25 759-783 8-32 (33)
316 cd00923 Cyt_c_Oxidase_Va Cytoc 82.6 8.2 0.00018 31.2 7.1 48 744-791 35-82 (103)
317 PF10602 RPN7: 26S proteasome 82.3 16 0.00035 34.2 10.5 95 649-745 37-139 (177)
318 KOG4570 Uncharacterized conser 82.0 12 0.00027 37.4 9.7 103 409-511 58-165 (418)
319 KOG3364 Membrane protein invol 81.9 14 0.00031 32.0 8.8 68 716-783 29-103 (149)
320 KOG0890 Protein kinase of the 81.9 1.9E+02 0.004 38.3 28.7 61 751-813 1670-1730(2382)
321 PF02284 COX5A: Cytochrome c o 81.9 9.9 0.00022 31.1 7.4 49 744-792 38-86 (108)
322 KOG0376 Serine-threonine phosp 81.8 2.6 5.6E-05 44.7 5.5 114 726-865 11-126 (476)
323 KOG0276 Vesicle coat complex C 81.7 9.3 0.0002 41.8 9.5 101 425-542 647-747 (794)
324 TIGR02561 HrpB1_HrpK type III 80.7 41 0.0009 30.0 12.1 64 696-762 23-88 (153)
325 PF08631 SPO22: Meiosis protei 80.6 71 0.0015 32.6 24.0 19 760-778 255-273 (278)
326 PF07035 Mic1: Colon cancer-as 80.3 44 0.00095 30.7 12.1 129 68-204 16-146 (167)
327 KOG1464 COP9 signalosome, subu 80.0 46 0.00099 32.6 12.5 202 612-813 21-260 (440)
328 PF13174 TPR_6: Tetratricopept 79.8 1.9 4.2E-05 26.7 2.5 28 787-814 2-29 (33)
329 smart00028 TPR Tetratricopepti 79.4 3.7 7.9E-05 24.6 3.9 30 753-782 3-32 (34)
330 PF13170 DUF4003: Protein of u 79.1 79 0.0017 32.5 15.1 139 664-804 78-236 (297)
331 PF10602 RPN7: 26S proteasome 79.1 13 0.00027 34.9 8.7 89 721-809 38-137 (177)
332 KOG4570 Uncharacterized conser 78.6 20 0.00044 35.9 9.9 101 207-309 58-165 (418)
333 PF02259 FAT: FAT domain; Int 78.5 64 0.0014 34.2 15.4 65 749-813 144-212 (352)
334 KOG2066 Vacuolar assembly/sort 78.2 1.4E+02 0.003 34.5 24.3 78 150-261 363-440 (846)
335 KOG1308 Hsp70-interacting prot 78.1 1.2 2.5E-05 44.9 1.6 90 732-821 127-218 (377)
336 PF06552 TOM20_plant: Plant sp 78.1 10 0.00022 34.9 7.3 43 767-816 96-138 (186)
337 PF13181 TPR_8: Tetratricopept 77.7 3.7 8E-05 25.7 3.4 27 650-676 3-29 (34)
338 KOG1550 Extracellular protein 76.4 1.2E+02 0.0026 34.7 17.1 152 658-816 259-428 (552)
339 PF14853 Fis1_TPR_C: Fis1 C-te 74.8 18 0.00039 25.8 6.3 50 787-862 3-52 (53)
340 PF13374 TPR_10: Tetratricopep 74.8 7.7 0.00017 25.5 4.6 27 650-676 4-30 (42)
341 COG4455 ImpE Protein of avirul 74.1 11 0.00024 35.6 6.5 61 725-785 7-69 (273)
342 KOG0551 Hsp90 co-chaperone CNS 73.5 18 0.00039 36.7 8.2 90 720-809 82-177 (390)
343 KOG0545 Aryl-hydrocarbon recep 73.2 23 0.00049 34.2 8.4 55 759-813 238-292 (329)
344 COG4455 ImpE Protein of avirul 73.0 66 0.0014 30.7 11.2 125 651-784 4-138 (273)
345 PF02284 COX5A: Cytochrome c o 72.9 28 0.0006 28.6 7.6 60 666-727 28-87 (108)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 72.0 31 0.00067 28.0 7.6 61 664-726 23-83 (103)
347 PRK13800 putative oxidoreducta 71.8 2.5E+02 0.0054 34.5 21.8 82 680-765 753-835 (897)
348 PF13374 TPR_10: Tetratricopep 71.7 9.1 0.0002 25.1 4.4 24 788-811 5-28 (42)
349 KOG4642 Chaperone-dependent E3 71.2 14 0.00029 35.6 6.5 110 692-804 19-134 (284)
350 PF14561 TPR_20: Tetratricopep 70.7 9.9 0.00021 30.8 4.9 38 772-809 9-46 (90)
351 KOG0276 Vesicle coat complex C 70.4 32 0.00069 37.9 9.7 130 84-238 617-746 (794)
352 PF08631 SPO22: Meiosis protei 70.0 1.3E+02 0.0029 30.6 24.0 159 649-810 85-271 (278)
353 PF10579 Rapsyn_N: Rapsyn N-te 69.7 9.5 0.00021 29.5 4.2 47 695-741 18-65 (80)
354 PF13934 ELYS: Nuclear pore co 69.4 94 0.002 30.5 12.4 106 651-765 79-186 (226)
355 PF07721 TPR_4: Tetratricopept 68.9 8.5 0.00018 22.4 3.1 20 724-743 6-25 (26)
356 KOG2063 Vacuolar assembly/sort 68.8 76 0.0017 37.6 13.2 130 145-291 506-638 (877)
357 COG1747 Uncharacterized N-term 68.7 1.8E+02 0.004 31.7 21.0 163 619-788 68-242 (711)
358 TIGR02508 type_III_yscG type I 68.7 60 0.0013 26.6 8.5 86 497-586 21-106 (115)
359 KOG0890 Protein kinase of the 67.4 4.2E+02 0.0091 35.3 33.7 128 417-553 1422-1552(2382)
360 PRK15180 Vi polysaccharide bio 67.3 44 0.00095 35.7 9.8 119 661-783 302-423 (831)
361 KOG0403 Neoplastic transformat 67.0 1.8E+02 0.004 31.1 18.1 71 419-493 513-586 (645)
362 PHA02875 ankyrin repeat protei 66.3 2E+02 0.0044 31.3 17.5 19 321-339 72-90 (413)
363 KOG0686 COP9 signalosome, subu 66.2 1.4E+02 0.0031 31.5 12.9 153 620-776 153-329 (466)
364 COG2976 Uncharacterized protei 65.8 49 0.0011 31.1 8.7 85 655-745 96-185 (207)
365 PF11207 DUF2989: Protein of u 65.1 52 0.0011 31.1 9.0 73 665-738 123-197 (203)
366 PF13762 MNE1: Mitochondrial s 64.9 71 0.0015 28.5 9.3 76 217-292 43-128 (145)
367 KOG2063 Vacuolar assembly/sort 64.9 3.1E+02 0.0067 32.9 18.8 27 549-575 506-532 (877)
368 KOG4507 Uncharacterized conser 64.9 20 0.00042 39.2 6.9 101 693-796 617-721 (886)
369 COG3947 Response regulator con 64.3 1.7E+02 0.0036 29.6 12.4 58 651-710 282-340 (361)
370 PRK10941 hypothetical protein; 62.3 82 0.0018 31.8 10.6 78 650-729 183-261 (269)
371 PF09986 DUF2225: Uncharacteri 62.3 47 0.001 32.2 8.7 60 754-813 121-193 (214)
372 PF09670 Cas_Cas02710: CRISPR- 61.7 1.2E+02 0.0027 32.5 12.5 124 656-780 139-270 (379)
373 PF10345 Cohesin_load: Cohesin 61.4 3.1E+02 0.0068 31.8 33.2 49 764-812 547-604 (608)
374 KOG4642 Chaperone-dependent E3 59.8 84 0.0018 30.6 9.3 83 626-710 19-105 (284)
375 PF14561 TPR_20: Tetratricopep 59.8 86 0.0019 25.4 8.4 63 750-812 21-86 (90)
376 KOG3364 Membrane protein invol 59.5 80 0.0017 27.7 8.3 70 680-751 29-104 (149)
377 PF09477 Type_III_YscG: Bacter 57.7 1E+02 0.0022 25.7 8.1 82 190-274 18-99 (116)
378 PF07720 TPR_3: Tetratricopept 57.4 40 0.00086 21.7 4.8 30 754-783 4-35 (36)
379 PRK15180 Vi polysaccharide bio 57.2 1E+02 0.0022 33.1 10.2 140 695-838 301-442 (831)
380 smart00386 HAT HAT (Half-A-TPR 56.8 21 0.00046 21.6 3.7 29 765-793 1-29 (33)
381 PF07575 Nucleopor_Nup85: Nup8 56.1 2E+02 0.0043 33.0 13.9 31 560-590 508-538 (566)
382 PF07163 Pex26: Pex26 protein; 55.5 1.3E+02 0.0029 30.0 10.2 88 655-745 90-184 (309)
383 KOG3824 Huntingtin interacting 55.4 32 0.00068 34.4 6.0 45 763-807 128-172 (472)
384 TIGR03504 FimV_Cterm FimV C-te 55.0 29 0.00064 23.5 4.1 25 654-678 5-29 (44)
385 PHA02875 ankyrin repeat protei 54.6 1.7E+02 0.0037 31.9 12.8 14 367-380 183-196 (413)
386 smart00028 TPR Tetratricopepti 54.6 23 0.0005 20.7 3.7 27 650-676 3-29 (34)
387 PF13929 mRNA_stabil: mRNA sta 53.6 2.6E+02 0.0055 28.4 13.1 64 578-641 198-262 (292)
388 PF14863 Alkyl_sulf_dimr: Alky 53.3 60 0.0013 28.9 7.0 68 735-805 57-124 (141)
389 PF04910 Tcf25: Transcriptiona 53.0 3.1E+02 0.0068 29.2 16.7 15 768-782 210-224 (360)
390 KOG3807 Predicted membrane pro 52.3 1.4E+02 0.003 30.4 9.9 166 593-788 227-399 (556)
391 KOG1586 Protein required for f 52.2 2.4E+02 0.0051 27.6 19.3 32 765-796 209-242 (288)
392 COG4976 Predicted methyltransf 51.4 23 0.00049 33.9 4.2 58 728-785 4-63 (287)
393 PF04910 Tcf25: Transcriptiona 51.2 3.3E+02 0.0072 29.0 15.8 54 589-642 110-164 (360)
394 PRK11619 lytic murein transgly 50.2 4.7E+02 0.01 30.5 37.4 93 726-818 414-509 (644)
395 PRK13342 recombination factor 50.1 3.2E+02 0.007 29.8 13.7 46 448-493 229-277 (413)
396 PF06957 COPI_C: Coatomer (COP 49.6 36 0.00078 36.5 6.0 108 658-783 214-332 (422)
397 PF13934 ELYS: Nuclear pore co 49.4 2.3E+02 0.0049 27.8 11.1 112 631-751 92-204 (226)
398 PF10579 Rapsyn_N: Rapsyn N-te 48.7 53 0.0011 25.6 5.0 48 660-707 18-67 (80)
399 PF04190 DUF410: Protein of un 48.7 3E+02 0.0065 27.7 13.7 106 428-544 3-118 (260)
400 PF14689 SPOB_a: Sensor_kinase 47.7 42 0.0009 24.9 4.4 45 665-711 7-51 (62)
401 PF09477 Type_III_YscG: Bacter 47.2 1.7E+02 0.0037 24.5 8.7 86 496-585 21-106 (116)
402 PHA03100 ankyrin repeat protei 47.2 4.5E+02 0.0097 29.3 16.1 17 222-238 41-57 (480)
403 KOG0292 Vesicle coat complex C 46.7 4.2E+02 0.0091 31.4 13.5 133 624-780 650-782 (1202)
404 PF12862 Apc5: Anaphase-promot 46.5 62 0.0014 26.4 5.8 50 762-811 9-67 (94)
405 PF13929 mRNA_stabil: mRNA sta 46.3 3.3E+02 0.0072 27.6 13.9 60 512-571 198-262 (292)
406 TIGR02710 CRISPR-associated pr 45.7 2.5E+02 0.0054 29.9 11.2 55 654-708 136-196 (380)
407 TIGR03504 FimV_Cterm FimV C-te 45.7 44 0.00096 22.7 3.8 24 553-576 5-28 (44)
408 PF11846 DUF3366: Domain of un 45.1 79 0.0017 30.1 7.2 37 746-782 139-175 (193)
409 KOG3824 Huntingtin interacting 44.9 31 0.00067 34.5 4.2 59 731-789 128-188 (472)
410 PF10366 Vps39_1: Vacuolar sor 44.6 1E+02 0.0022 26.0 6.8 27 549-575 41-67 (108)
411 KOG0292 Vesicle coat complex C 44.3 46 0.001 38.5 5.9 96 690-809 627-722 (1202)
412 KOG4077 Cytochrome c oxidase, 43.4 1.2E+02 0.0027 26.0 6.8 45 744-788 77-121 (149)
413 PF13762 MNE1: Mitochondrial s 42.3 2.6E+02 0.0055 25.1 10.5 50 546-595 78-128 (145)
414 cd08819 CARD_MDA5_2 Caspase ac 41.7 1.3E+02 0.0028 24.1 6.3 64 198-263 22-85 (88)
415 COG2912 Uncharacterized conser 41.2 2.1E+02 0.0045 28.7 9.3 55 757-811 187-241 (269)
416 COG1747 Uncharacterized N-term 41.0 5.3E+02 0.012 28.4 20.4 158 546-710 65-232 (711)
417 KOG0687 26S proteasome regulat 41.0 4.2E+02 0.0092 27.3 12.7 23 686-708 107-129 (393)
418 cd08819 CARD_MDA5_2 Caspase ac 41.0 1.7E+02 0.0037 23.4 6.9 38 528-566 48-85 (88)
419 PF04190 DUF410: Protein of un 40.9 3.9E+02 0.0085 26.9 16.1 80 616-712 89-170 (260)
420 PF10366 Vps39_1: Vacuolar sor 40.1 1.3E+02 0.0027 25.4 6.7 28 447-474 40-67 (108)
421 PF10345 Cohesin_load: Cohesin 39.8 6.6E+02 0.014 29.2 31.2 30 647-676 571-605 (608)
422 PF04097 Nic96: Nup93/Nic96; 39.3 6.7E+02 0.015 29.1 18.0 63 521-583 116-188 (613)
423 KOG2471 TPR repeat-containing 38.7 5.6E+02 0.012 28.1 16.4 60 759-821 214-273 (696)
424 COG4785 NlpI Lipoprotein NlpI, 38.4 3.7E+02 0.0081 25.9 17.2 62 515-576 98-162 (297)
425 KOG1498 26S proteasome regulat 38.2 5.2E+02 0.011 27.5 17.6 114 723-836 135-263 (439)
426 PF11846 DUF3366: Domain of un 38.1 88 0.0019 29.7 6.4 32 679-710 140-171 (193)
427 PF04090 RNA_pol_I_TF: RNA pol 37.8 3.7E+02 0.008 25.7 11.4 61 649-710 42-103 (199)
428 KOG1550 Extracellular protein 37.7 6.7E+02 0.015 28.7 19.3 52 256-310 261-324 (552)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 37.7 2.8E+02 0.006 24.2 9.6 43 666-708 81-124 (126)
430 PF11768 DUF3312: Protein of u 37.6 2.5E+02 0.0054 31.3 9.9 18 728-745 503-520 (545)
431 PF11848 DUF3368: Domain of un 37.4 1E+02 0.0022 21.4 4.8 33 255-287 13-45 (48)
432 PRK13800 putative oxidoreducta 37.0 8.8E+02 0.019 29.8 24.7 254 436-711 625-880 (897)
433 KOG4077 Cytochrome c oxidase, 36.5 1.9E+02 0.0042 25.0 6.9 58 667-726 68-125 (149)
434 PF07163 Pex26: Pex26 protein; 36.3 2.1E+02 0.0045 28.7 8.2 21 250-270 89-109 (309)
435 PRK10564 maltose regulon perip 35.8 69 0.0015 32.4 5.1 42 649-690 258-299 (303)
436 KOG2471 TPR repeat-containing 35.4 6.3E+02 0.014 27.7 13.7 106 657-763 249-381 (696)
437 PF09670 Cas_Cas02710: CRISPR- 34.6 2.1E+02 0.0046 30.7 9.1 53 692-746 140-196 (379)
438 PF08967 DUF1884: Domain of un 34.1 45 0.00099 25.8 2.7 25 845-869 8-32 (85)
439 KOG2062 26S proteasome regulat 34.1 8.1E+02 0.018 28.5 32.2 93 757-851 613-721 (929)
440 PF11848 DUF3368: Domain of un 33.9 1.5E+02 0.0033 20.5 5.2 34 658-691 12-45 (48)
441 cd00280 TRFH Telomeric Repeat 33.4 1.3E+02 0.0029 28.0 6.0 49 756-805 116-164 (200)
442 PF14689 SPOB_a: Sensor_kinase 33.3 62 0.0013 23.9 3.4 30 647-676 22-51 (62)
443 PRK14015 pepN aminopeptidase N 33.1 9.8E+02 0.021 29.2 15.2 124 682-806 713-845 (875)
444 KOG2300 Uncharacterized conser 32.3 7.1E+02 0.015 27.3 18.5 172 634-807 299-507 (629)
445 KOG0686 COP9 signalosome, subu 32.1 6.6E+02 0.014 26.9 12.8 130 650-783 152-307 (466)
446 PRK10564 maltose regulon perip 31.8 72 0.0016 32.3 4.5 41 246-286 259-299 (303)
447 TIGR02710 CRISPR-associated pr 31.5 6.7E+02 0.015 26.8 12.1 18 627-644 140-157 (380)
448 KOG2659 LisH motif-containing 31.4 5E+02 0.011 25.3 11.6 94 649-745 27-129 (228)
449 PF11663 Toxin_YhaV: Toxin wit 31.3 53 0.0012 28.6 3.1 34 557-592 105-138 (140)
450 PF11663 Toxin_YhaV: Toxin wit 31.2 63 0.0014 28.2 3.5 33 457-491 106-138 (140)
451 TIGR02414 pepN_proteo aminopep 31.2 1E+03 0.023 28.9 15.2 151 652-806 676-835 (863)
452 COG0790 FOG: TPR repeat, SEL1 31.0 5.8E+02 0.013 26.0 17.6 131 662-799 91-236 (292)
453 cd08326 CARD_CASP9 Caspase act 29.5 1.7E+02 0.0037 23.3 5.5 62 198-263 19-80 (84)
454 PF12862 Apc5: Anaphase-promot 28.9 3.2E+02 0.0068 22.2 7.6 53 659-711 9-69 (94)
455 cd08326 CARD_CASP9 Caspase act 28.4 76 0.0017 25.3 3.4 36 92-127 41-76 (84)
456 PF11817 Foie-gras_1: Foie gra 28.1 1.7E+02 0.0037 29.2 6.7 17 693-709 188-204 (247)
457 PRK13342 recombination factor 27.8 8.2E+02 0.018 26.6 16.5 101 579-697 173-279 (413)
458 KOG2422 Uncharacterized conser 27.8 5.6E+02 0.012 28.8 10.5 104 693-796 248-388 (665)
459 COG2909 MalT ATP-dependent tra 27.5 1.1E+03 0.024 28.1 25.8 85 557-641 425-521 (894)
460 PF04090 RNA_pol_I_TF: RNA pol 27.2 3.4E+02 0.0073 25.9 7.9 92 752-843 42-134 (199)
461 COG4976 Predicted methyltransf 26.8 1.2E+02 0.0025 29.5 4.7 55 762-816 6-60 (287)
462 PF11768 DUF3312: Protein of u 26.5 3.2E+02 0.0069 30.5 8.5 27 246-272 410-436 (545)
463 PF11817 Foie-gras_1: Foie gra 26.4 3.9E+02 0.0084 26.6 8.9 76 634-709 162-244 (247)
464 PF04762 IKI3: IKI3 family; I 26.2 5.2E+02 0.011 31.8 11.3 99 686-810 815-926 (928)
465 PF08424 NRDE-2: NRDE-2, neces 25.7 7.8E+02 0.017 25.7 15.3 114 664-781 47-184 (321)
466 COG5159 RPN6 26S proteasome re 25.5 7.1E+02 0.015 25.1 13.6 51 656-706 11-68 (421)
467 PF09986 DUF2225: Uncharacteri 25.4 6.3E+02 0.014 24.5 9.8 51 664-714 141-196 (214)
468 COG4941 Predicted RNA polymera 24.7 8.1E+02 0.018 25.5 11.9 120 664-788 272-402 (415)
469 PF14669 Asp_Glu_race_2: Putat 24.2 6.2E+02 0.013 24.0 12.7 173 344-541 7-206 (233)
470 PF02184 HAT: HAT (Half-A-TPR) 24.2 1.8E+02 0.0038 18.3 3.6 26 766-792 2-27 (32)
471 PF12926 MOZART2: Mitotic-spin 24.1 3.8E+02 0.0082 21.5 7.1 42 502-543 29-70 (88)
472 COG4472 Uncharacterized protei 24.0 1.6E+02 0.0035 22.7 4.0 35 829-866 5-39 (88)
473 PF07575 Nucleopor_Nup85: Nup8 23.9 1.1E+03 0.025 26.9 17.4 57 82-140 114-176 (566)
474 PRK12356 glutaminase; Reviewed 23.8 6.3E+02 0.014 26.2 9.7 155 76-238 93-256 (319)
475 COG5187 RPN7 26S proteasome re 23.6 7.8E+02 0.017 25.0 10.5 26 684-709 116-141 (412)
476 KOG4814 Uncharacterized conser 23.3 3.3E+02 0.0071 30.8 7.8 63 754-816 397-459 (872)
477 KOG4507 Uncharacterized conser 23.3 4.1E+02 0.0088 29.8 8.4 131 679-812 567-703 (886)
478 PRK11639 zinc uptake transcrip 23.0 2.9E+02 0.0064 25.5 6.8 45 249-293 30-74 (169)
479 COG2909 MalT ATP-dependent tra 22.6 1.4E+03 0.03 27.5 22.9 56 688-744 623-684 (894)
480 cd00280 TRFH Telomeric Repeat 22.4 5.6E+02 0.012 24.1 7.9 21 690-710 118-138 (200)
481 COG0735 Fur Fe2+/Zn2+ uptake r 22.4 3.3E+02 0.0072 24.4 6.7 55 174-228 16-70 (145)
482 PF04781 DUF627: Protein of un 22.1 4.7E+02 0.01 22.2 6.9 35 770-804 63-97 (111)
483 PF15015 NYD-SP12_N: Spermatog 22.0 1.8E+02 0.0039 30.9 5.4 21 724-744 233-253 (569)
484 KOG2062 26S proteasome regulat 21.7 1.3E+03 0.029 26.9 26.6 76 735-821 622-698 (929)
485 PF07064 RIC1: RIC1; InterPro 21.7 8.3E+02 0.018 24.5 13.9 59 249-307 184-248 (258)
486 COG5108 RPO41 Mitochondrial DN 21.4 3E+02 0.0065 31.2 7.1 89 218-309 33-133 (1117)
487 COG0735 Fur Fe2+/Zn2+ uptake r 20.9 3.8E+02 0.0083 24.0 6.8 41 249-289 25-65 (145)
488 KOG4279 Serine/threonine prote 20.8 2.7E+02 0.0059 32.0 6.8 145 650-810 203-369 (1226)
489 PRK11639 zinc uptake transcrip 20.5 2.7E+02 0.0059 25.8 6.0 39 661-699 38-76 (169)
490 PF15469 Sec5: Exocyst complex 20.2 7.1E+02 0.015 23.2 12.4 84 688-787 91-175 (182)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-118 Score=1064.04 Aligned_cols=740 Identities=34% Similarity=0.616 Sum_probs=728.8
Q ss_pred CCceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHH
Q 002718 141 RDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSAL 219 (888)
Q Consensus 141 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 219 (888)
++..++|.++.+|++.|++++|+.+|++|... |++|+ .+|..++++|...+.++.|.++|..+++.|..++..++|+|
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 67778999999999999999999999999988 88999 99999999999999999999999999999999999999999
Q ss_pred HHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChhHHH
Q 002718 220 VDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLKLGT 299 (888)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 299 (888)
+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+++|++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002718 300 QLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFN 379 (888)
Q Consensus 300 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 379 (888)
++|..+.+.|+.||..++|+||++|+++|+++.|.++|++|+.+|+++||+||.+|++.|++++|+++|.+|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhC
Q 002718 380 EITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQN 459 (888)
Q Consensus 380 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 459 (888)
..||+.+|.+|++.|+++.+.++|..+.+.|+.||..+|++|+++|+++|++++|.++|++|..+|+++||++|.+|++.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002718 460 GNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKIL 539 (888)
Q Consensus 460 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 539 (888)
|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+++|+++|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcch
Q 002718 540 KRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYI 619 (888)
Q Consensus 540 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 619 (888)
++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+.|+.++..+
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 999999999999999999999999999999999986 5999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002718 620 SSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLV 699 (888)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 699 (888)
+|+|+++|+++|++++|.++|+.+ .+|.++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002718 700 EKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQ 779 (888)
Q Consensus 700 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 779 (888)
++|.++|+.|.+++|+.|+..||++|+++|+|.|++++|.+++++|+++||..+|++|+++|+.+|+.+.|+.+++++++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 002718 780 LDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEMK 859 (888)
Q Consensus 780 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 859 (888)
++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|.||+||||+++++|.|.+||++||+.++||.+|++|..+|+
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 765 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCC--ccccCcchhhhhhccccc
Q 002718 860 WRGCASD--VNYEKVEEHESQDGSSSC 884 (888)
Q Consensus 860 ~~g~~~~--~~~~~~~~~~~~~~~~~~ 884 (888)
+.||+|| +++ +++||+||+.+++|
T Consensus 766 ~~g~~~~~~~~~-~~~~~~k~~~~~~h 791 (857)
T PLN03077 766 ASGLAGSESSSM-DEIEVSKDDIFCGH 791 (857)
T ss_pred hCCcCCCcchhc-cccHHHHHHHHHhc
Confidence 9999999 666 56889999999887
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-94 Score=852.91 Aligned_cols=674 Identities=27% Similarity=0.468 Sum_probs=654.7
Q ss_pred CCCCCcccHHHHHHHhhccCCCchhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCC----CCCcchhh
Q 002718 41 TTKPKTITFSRIFQELTHDQAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMP----QRDVVSWN 116 (888)
Q Consensus 41 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~ 116 (888)
+.+|+..+++.++.++++.|++.+|..+|..|...|+.|+..+|..++..+.+.+.++.|..+++.+. .++...+|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999998664 47888999
Q ss_pred HHHHHHHhcCchhHHHHhhhhCCCCCceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHHhcccCCch
Q 002718 117 ALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKACSILEDGD 195 (888)
Q Consensus 117 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~ 195 (888)
+||.+|++.|+++.|.++|++|++||.++||++|++|++.|++++|+++|++|... |+.|+ .||+.++++|+..+++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999998 99999 99999999999999999
Q ss_pred hHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 002718 196 FGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGV 275 (888)
Q Consensus 196 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 275 (888)
.+.++|..+++.|+.||+.++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHH
Q 002718 276 GISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGY 355 (888)
Q Consensus 276 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 355 (888)
.||..||+.+|.+|++.|+++.|.++|..+.+.|+.||..++|+||++|+++|++++|.++|++|..+|+++||++|.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHH
Q 002718 356 AQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEAC 435 (888)
Q Consensus 356 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 435 (888)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++|+.+.+.|+.|+..++++|+++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 002718 436 HVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSN 515 (888)
Q Consensus 436 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 515 (888)
++|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.++|..+.+.|+.++
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999986 5999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCc
Q 002718 516 LFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNL 595 (888)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 595 (888)
..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.+|.+|++.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHH-HhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002718 596 ATVGLGMQLHAQII-KQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP-KRDFVTWNAMICGYAHHGLGEEALKVFEN 673 (888)
Q Consensus 596 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 673 (888)
|.+++|.++|+.|. +.|+.|+..+|++++++|+++|++++|.+++++|. +||..+|++|+.+|..+|+.+.+....++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999 67999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 002718 674 MELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE 720 (888)
Q Consensus 674 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 720 (888)
+.+ +.|+ ...|..|.+.|...|++++|.++.+.|++. |+.+++.
T Consensus 683 l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-g~~k~~g 727 (857)
T PLN03077 683 IFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-GLTVDPG 727 (857)
T ss_pred HHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-CCCCCCC
Confidence 988 7885 567778888999999999999999999854 8887653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-88 Score=784.91 Aligned_cols=543 Identities=32% Similarity=0.568 Sum_probs=535.1
Q ss_pred CCCCccHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHH
Q 002718 342 NCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKSG-LGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANS 420 (888)
Q Consensus 342 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 420 (888)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3466799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHH
Q 002718 421 ILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYG 500 (888)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 500 (888)
|+++|+++|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKP 580 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 580 (888)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Q 002718 581 DDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAH 660 (888)
Q Consensus 581 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 660 (888)
|..||++++.+|++.|.++.|.++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 002718 661 HGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALK 740 (888)
Q Consensus 661 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~ 740 (888)
+|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 002718 741 LIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEP 820 (888)
Q Consensus 741 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 820 (888)
++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCCCC--ccccCcchhhhhhccccc
Q 002718 821 GCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEMKWRGCASD--VNYEKVEEHESQDGSSSC 884 (888)
Q Consensus 821 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 884 (888)
|+|||++++++|.|.+||++||++.+||++|+++..+|++.||+|| ++++|+++++|++.+++|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~h 629 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYH 629 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 899999999999999887
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-67 Score=610.02 Aligned_cols=473 Identities=25% Similarity=0.432 Sum_probs=460.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHH
Q 002718 242 RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIG-VGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTAT 320 (888)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 320 (888)
++.++|+++|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999999864 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHH
Q 002718 321 LDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGL 400 (888)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 400 (888)
+++|+++|+++.|.++|++|+.+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 002718 401 QVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPD 480 (888)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 480 (888)
++|..+.+.|+.+|..++++|+++|+++|++++|.++|+.|..+|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcC
Q 002718 481 EFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGA 560 (888)
Q Consensus 481 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 560 (888)
..||++++.+|++.|+++.|.++|..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hCCCCCcchhhhhccchhhcCCHHHHHHH
Q 002718 561 KRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIK-QEMQSDVYISSTLVDMYSKCGNVQDSRIM 639 (888)
Q Consensus 561 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 639 (888)
|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 59999999999999999999999999999
Q ss_pred HHhCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 002718 640 FEKSP-KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP 717 (888)
Q Consensus 640 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 717 (888)
++++. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..|+..|++.|++++|.++++.|.+. |+.+
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99997 78999999999999999999999999999976 7784 579999999999999999999999999854 7653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4e-67 Score=607.62 Aligned_cols=525 Identities=15% Similarity=0.219 Sum_probs=434.0
Q ss_pred CCCchhhHHHHHHHHhcCChhHHHHHHhcCCCCCcc-----hhhHHHHHHHhcCchhHHHHhhhhCCCCCceehHHHHHH
Q 002718 78 KPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVV-----SWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSG 152 (888)
Q Consensus 78 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 152 (888)
.++...|..++..|++.|++++|+++|++|.+++.. +++.++.+|++.|.+++|..+|+.|+.||..+|+.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 455556666777777777777777777777654433 334445555666666666666666666666666666666
Q ss_pred HhhCCChhhHHHHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhH
Q 002718 153 YLLVGDFSKAIDVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDS 232 (888)
Q Consensus 153 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 232 (888)
|++.|++++|.++|++| .+.|+.||..+|+.||.+|+++|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M-----------------------------------~~~Gl~pD~~tynsLI~~y~k~G~vd~A 491 (1060)
T PLN03218 447 CASSQDIDGALRVLRLV-----------------------------------QEAGLKADCKLYTTLISTCAKSGKVDAM 491 (1060)
T ss_pred HHhCcCHHHHHHHHHHH-----------------------------------HHcCCCCCHHHHHHHHHHHHhCcCHHHH
Confidence 66666666555555555 5567889999999999999999999999
Q ss_pred HHHhcccC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHH-
Q 002718 233 VSLFNRMS----ERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALK- 307 (888)
Q Consensus 233 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~- 307 (888)
.++|++|. .||.++|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|+.|.+
T Consensus 492 ~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999997 4889999999999999999999999999999999999999999999999999999999999999976
Q ss_pred -hCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCC----CccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchh
Q 002718 308 -TDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCG----LQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEIT 382 (888)
Q Consensus 308 -~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 382 (888)
.|+.||..+|+++|++|+++|++++|.++|+.|.+.+ ..+||++|.+|++.|++++|+++|++|.+.|+.||..|
T Consensus 572 ~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 6789999999999999999999999999999987654 46999999999999999999999999999999999999
Q ss_pred HhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcC----CCCeeeHHHHHHHHHh
Q 002718 383 LSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEME----RRDAVSWNAIIAVQAQ 458 (888)
Q Consensus 383 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~ 458 (888)
|+.+|.+|++.|+++.|.++|..|.+.|+.|+..+|++||++|+++|++++|.++|++|. .||.++||.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999995 5799999999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 002718 459 NGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKI 538 (888)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 538 (888)
.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++.+ ++++|.++
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l 809 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACAL 809 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999976542 34555444
Q ss_pred HH------hcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q 002718 539 LK------RTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQE 612 (888)
Q Consensus 539 ~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 612 (888)
.+ .+...+...| .++|+.+|++|++.|+.||..||+.+|.+++..+..+.+..+++.+...+
T Consensus 810 ~~~v~~f~~g~~~~~n~w------------~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKW------------TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred hhhhhhhhccccccccch------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 33 2222222333 45699999999999999999999999966555555555444444443333
Q ss_pred CCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 002718 613 MQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA 684 (888)
Q Consensus 613 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 684 (888)
. .++..+|+++|.++.+. .++|+.+|++|...|+.|+..
T Consensus 878 ~-------------------------------~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 D-------------------------------SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred C-------------------------------CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 3 34566777777776432 368999999999999999775
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-66 Score=603.74 Aligned_cols=525 Identities=15% Similarity=0.225 Sum_probs=476.6
Q ss_pred CCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 002718 209 FDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNW-----VSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYA 283 (888)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 283 (888)
..++...|..++..++++|++++|.++|++|+.++. .+++.++.+|.+.|..++|+++|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 346677888999999999999999999999987654 4566778889999999999999999974 9999999
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCC----CCCCccHHHHHHHHHhCC
Q 002718 284 SILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLP----NCGLQSYNAIIVGYAQNG 359 (888)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 359 (888)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|+++.|.++|++|. .+|..+|++||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999998 467889999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHH--hcCCCchhhhHHHHHhhhccCChHHHHHH
Q 002718 360 QGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIK--SNLWSNICVANSILDMYGKCQDVIEACHV 437 (888)
Q Consensus 360 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 437 (888)
++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 68999999999999999999999999999
Q ss_pred HhhcCCC----CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCC
Q 002718 438 FDEMERR----DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMG 513 (888)
Q Consensus 438 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 513 (888)
|+.|.+. +..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999864 668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002718 514 SNLFVGSALIDMYCKCGMVEEAKKILKRTE----ERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLL 589 (888)
Q Consensus 514 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 589 (888)
|+..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 5899999999999999999999999999999999999999999999
Q ss_pred HHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccch----hhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHH
Q 002718 590 DTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMY----SKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGE 665 (888)
Q Consensus 590 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 665 (888)
.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .+++...++...|+.+...+...| .+
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w------------~~ 829 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW------------TS 829 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch------------HH
Confidence 99999999999999999999999999999999999763 333444333334443333333334 45
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 666 EALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
.|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.|. ..+..|+..+|+++++++++. .++|..++++|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 699999999999999999999999988888888888888888776 337778888999999998543 47899999998
Q ss_pred ---CCCCCHH
Q 002718 746 ---PFEADDV 752 (888)
Q Consensus 746 ---~~~p~~~ 752 (888)
++.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 5666543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.1e-40 Score=400.98 Aligned_cols=754 Identities=11% Similarity=0.040 Sum_probs=492.3
Q ss_pred CcccHHHHHHHhhccCCCchhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCC----CCcchhhHHHH
Q 002718 45 KTITFSRIFQELTHDQAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQ----RDVVSWNALIF 120 (888)
Q Consensus 45 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~ 120 (888)
+...+..+...+...|++++|...+..+...++. +......+...+...|+++.|...+..... .....+..+..
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 133 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGL 133 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHH
Confidence 4455677888888999999999999999887754 445556678888899999999999987652 23446677778
Q ss_pred HHHhcCchhHHHHhhhhCCC---CCceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHHhcccCCchh
Q 002718 121 GYAVRGEMGIARTLFEAMPE---RDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKACSILEDGDF 196 (888)
Q Consensus 121 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 196 (888)
.+.+.|++++|...|+++.+ .+...|..+...+...|++++|...++++... .+++ ..+..+...+...|+.+.
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~ 211 (899)
T TIGR02917 134 AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA--DPGNVDALLLKGDLLLSLGNIEL 211 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHH
Confidence 88889999999999988754 34567888888888899999999999888763 2334 667777777888899999
Q ss_pred HhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 002718 197 GVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSE--R-NWVSWNTVIAGCVQNYKFIEALKLFKIMQKI 273 (888)
Q Consensus 197 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 273 (888)
|...+...++..+ .+..++..++..+...|++++|...++.+.+ | +...+......+...|++++|+..|+++.+.
T Consensus 212 A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 212 ALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9998888887654 4566777888888888899888888887754 2 2223333344455677777777777777664
Q ss_pred CCCCCh-hhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCC---CCccHH
Q 002718 274 GVGISQ-STYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNC---GLQSYN 349 (888)
Q Consensus 274 g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 349 (888)
+ |+. ..+..+...+...|+++.|...+..+.+.. +.+......+...+.+.|++++|...++.+... +...|+
T Consensus 291 ~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 367 (899)
T TIGR02917 291 A--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALS 367 (899)
T ss_pred C--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3 222 223333444556667777777776666553 233444555566666666666666666654432 233455
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhc-------------------
Q 002718 350 AIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSN------------------- 410 (888)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~------------------- 410 (888)
.+...+.+.|++++|.+.|+++.+... .+...+..+...+...|+.+.+...+..+.+..
T Consensus 368 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 446 (899)
T TIGR02917 368 LLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCC
Confidence 566666666666666666666654321 122233333334444555555555554444332
Q ss_pred --------------CCCchhhhHHHHHhhhccCChHHHHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHH
Q 002718 411 --------------LWSNICVANSILDMYGKCQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLFYFISML 473 (888)
Q Consensus 411 --------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 473 (888)
.+.+..++..+...|...|++++|...|+++.. .+...+..+...+...|++++|.+.|+++.
T Consensus 447 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223344455555555555555555555555432 123344445555555555555555555555
Q ss_pred HcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccH
Q 002718 474 HAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE---RDVVSW 550 (888)
Q Consensus 474 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 550 (888)
..+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++.+.. .+...|
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 604 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW 604 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 432 2234455555555555666666666666555543 34445555566666666666666666666542 234556
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhc
Q 002718 551 NAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKC 630 (888)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 630 (888)
..+...|...|++++|...|+++.+.. +.+...+..+...+...|+++.|...+..+.+... .+...+..++..+.+.
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 666666666666666666666666542 23444555666666666667777766666665432 3345566666666677
Q ss_pred CCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002718 631 GNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFN 707 (888)
Q Consensus 631 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 707 (888)
|++++|.++++.+. +.+...|..+...+...|++++|.+.|+++.. ..|+..++..+..++.+.|++++|.+.++
T Consensus 683 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 77777776666655 33455666677777777777777777777777 45655666677777777778888877777
Q ss_pred HhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 708 VMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-P-FEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 708 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
.+.+. .+.+...+..++..|.+.|++++|.+.++++ . .++++.++..+...+...|+ ..|+..+++++++.|+++
T Consensus 761 ~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~ 837 (899)
T TIGR02917 761 AWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIP 837 (899)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCc
Confidence 77643 2344567777888888888888888888877 2 34467778888888888888 778888888888888888
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 786 STYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
..+..++.+|...|++++|.+.++.+.+.+
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888776644
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.7e-40 Score=403.02 Aligned_cols=751 Identities=10% Similarity=0.002 Sum_probs=623.8
Q ss_pred cccHHHHHHHhhccCCCchhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCC---CCcchhhHHHHHH
Q 002718 46 TITFSRIFQELTHDQAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQ---RDVVSWNALIFGY 122 (888)
Q Consensus 46 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~ 122 (888)
...+..+...+...|++++|...|..++.... .+...+..+...+...|++++|.++++++.. ++...+..+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34556667777788888999999988877653 3456777888888889999999998888754 3555777788888
Q ss_pred HhcCchhHHHHhhhhCCC---CCceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhH
Q 002718 123 AVRGEMGIARTLFEAMPE---RDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQ 199 (888)
Q Consensus 123 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 199 (888)
...|+.++|...|++..+ .+...|..++..+...|++++|...++.+.+. ..............+...|+++.|..
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~ 282 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKK-APNSPLAHYLKALVDFQKKNYEDARE 282 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCHHHHHH
Confidence 889999999998888754 35567888888888999999999999988764 22111333333444557788999999
Q ss_pred HHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 002718 200 LHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSE---RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVG 276 (888)
Q Consensus 200 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 276 (888)
.+..+++.++. +...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|...++.+.+.. +
T Consensus 283 ~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 360 (899)
T TIGR02917 283 TLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-P 360 (899)
T ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 99888876543 233344556677888999999999988754 345567788889999999999999999998754 3
Q ss_pred CChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCC---CccHHHHHH
Q 002718 277 ISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCG---LQSYNAIIV 353 (888)
Q Consensus 277 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~ 353 (888)
.+...+..+...+...|+++.|...+..+.+.. +.+...+..+...+...|+.++|.+.|+.....+ ...+..++.
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 439 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLIL 439 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHH
Confidence 456678888889999999999999999988764 3456677888888999999999999998865432 346777888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHH
Q 002718 354 GYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIE 433 (888)
Q Consensus 354 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 433 (888)
.+.+.|++++|+.+++++... .+++..++..+...+...|+++.|.+.+..+.+.. +.+...+..+...+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999875 34566788888899999999999999999988754 3345677888999999999999
Q ss_pred HHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 002718 434 ACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKS 510 (888)
Q Consensus 434 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 510 (888)
|.+.|+.+.. .+..++..+...+.+.|+.++|...|.++...+ +.+...+..+...+...|+++.|..+++.+.+.
T Consensus 518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999998864 356788899999999999999999999998764 345567788889999999999999999999876
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 002718 511 GMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE---RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYAT 587 (888)
Q Consensus 511 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 587 (888)
. +.+..++..+..+|.+.|++++|...|+.+.+ .+...|..+...+.+.|++++|...|+++.+.. +.+..++..
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 4 66788999999999999999999999998763 356678999999999999999999999998753 445788889
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHH
Q 002718 588 LLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGE 665 (888)
Q Consensus 588 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 665 (888)
+...+...|+++.|.++++.+.+... .+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+...|+++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 99999999999999999999988763 566778888999999999999999999876 455578888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002718 666 EALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQE 744 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 744 (888)
+|.+.++++.+. .| +...+..+...|...|++++|..+|+++.+.. +++...+..++..+.+.|+ ++|++++++
T Consensus 754 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 754 EAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 999999999984 55 66788999999999999999999999998542 3466789999999999999 889999998
Q ss_pred C-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 745 M-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 745 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
+ ...| ++.+|..+..++...|+++.|...++++++.+|.++.++..++.+|.+.|++++|.++++.|.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7 4444 667888999999999999999999999999999999999999999999999999999998774
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.6e-23 Score=255.87 Aligned_cols=349 Identities=10% Similarity=0.052 Sum_probs=257.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 002718 454 AVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVE 533 (888)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 533 (888)
..+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 44567778888888888877742 2234455566677777888888888888877764 344555666666664 45678
Q ss_pred HHHHHHHhcCCCC------------cccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCcccHHH
Q 002718 534 EAKKILKRTEERD------------VVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPD-DFTYATLLDTCGNLATVGL 600 (888)
Q Consensus 534 ~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~ 600 (888)
+|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+.+.|++++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 8888777665321 123455667778889999999999988875 443 4566677778888899999
Q ss_pred HHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCC----CHH---------HHHHHHHHHHhCCCHHHH
Q 002718 601 GMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKR----DFV---------TWNAMICGYAHHGLGEEA 667 (888)
Q Consensus 601 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~A 667 (888)
|...++.+++... .+...+..+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|
T Consensus 514 A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 514 ADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999988887543 23344444455567788999999988887622 111 123456778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 002718 668 LKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEMP 746 (888)
Q Consensus 668 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~ 746 (888)
+++++. ..++...+..+...+.+.|++++|+..|+++.+. .| +...+..++.+|...|++++|++.++...
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999872 2335667788889999999999999999999853 34 46678899999999999999999999873
Q ss_pred -CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------hHHHHHHHHHHcCCchHHHHHHHHH-HhCCC
Q 002718 747 -FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS------TYILLSNIYADAGMWDKLSYTRRLM-RQNKV 816 (888)
Q Consensus 747 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m-~~~~~ 816 (888)
..| +...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|...++.. ...++
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 455 4567778888888999999999999999998876543 5667899999999999998876644 44444
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4e-23 Score=252.41 Aligned_cols=663 Identities=9% Similarity=-0.002 Sum_probs=365.1
Q ss_pred HHHHHHHhhccCCCchhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCC--CCcchhhHHHHHHHhcC
Q 002718 49 FSRIFQELTHDQAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQ--RDVVSWNALIFGYAVRG 126 (888)
Q Consensus 49 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 126 (888)
+-...+-+...++.+.+.+.+.+++... +.++.++..++..+.+.|+.++|.+.+++..+ |+...+..+-..+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~---- 105 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM---- 105 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH----
Confidence 5556666777788888888888777653 23566677778888888888888888888765 3222111000000
Q ss_pred chhHHHHhhhhCCCCCceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCCc--hHHHHHHHhcccCCchhHhHHHHHH
Q 002718 127 EMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDNR--SFAVALKACSILEDGDFGVQLHCFA 204 (888)
Q Consensus 127 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~ 204 (888)
. ...++......+...+.+.|++++|+..|+++... .+|+. ............++.+.|...++.+
T Consensus 106 ---------~-~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 106 ---------L-LSTPEGRQALQQARLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred ---------H-hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 0 01122222344455667777777777777777652 23331 1111222223456777777777777
Q ss_pred HHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHH
Q 002718 205 MKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQS-TYA 283 (888)
Q Consensus 205 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 283 (888)
++..+ .+...+..+...+...|+.++|++.|+++...... +...+...+..+...+..++.. .+.
T Consensus 174 l~~~P-~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 174 NADYP-GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred HHhCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHH
Confidence 77643 24556777778888888888888888876542211 0111112222222222222111 122
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCC---CCCccHHHHHHHHHhCCC
Q 002718 284 SILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPN---CGLQSYNAIIVGYAQNGQ 360 (888)
Q Consensus 284 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 360 (888)
..+..+-.......+...+....+....|+... ...-..+...|++++|+..|++... .+...+..+...+.+.|+
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 222222222233444455544433332333221 2233455667888888888877543 234467777778888888
Q ss_pred hhHHHHHHHHHHHcCCCCCc-hhHhhH------------HHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhc
Q 002718 361 GVEALQLFRLLQKSGLGFNE-ITLSGA------------FSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGK 427 (888)
Q Consensus 361 ~~~A~~~~~~m~~~g~~p~~-~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 427 (888)
+++|+..|++..+....... ..+..+ -..+...|++++|...+..+++... .+...+..+...|..
T Consensus 319 ~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 319 RARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMA 397 (1157)
T ss_pred HHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 88888888887765322111 111111 1122333444444444444443321 122333344444444
Q ss_pred cCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 002718 428 CQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIH 504 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 504 (888)
.|++++|++.|++..+. +...+..+...|. .++.++|+..++.+.......-...
T Consensus 398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~--------------------- 455 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDI--------------------- 455 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHH---------------------
Confidence 44444444444444321 1222333333332 2334444444433221100000000
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 002718 505 SRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPD 581 (888)
Q Consensus 505 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 581 (888)
.. ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|++++|...|+++.+.. +.+
T Consensus 456 ----~~--~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 456 ----ER--SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred ----HH--HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 00 00011233344445555555555555554432 1 22334444445555555555555555544421 111
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCc---------chhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHH
Q 002718 582 DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDV---------YISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWN 652 (888)
Q Consensus 582 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 652 (888)
...+..+...+...++.++|...++.+......++. .....+.+.+...|+.++|.++++. .+.+...+.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~ 607 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHH
Confidence 222222222233444555555544443221111110 1122345667889999999999984 345666778
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHh
Q 002718 653 AMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILG 730 (888)
Q Consensus 653 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~ 730 (888)
.+...+.+.|++++|++.|++..+ ..| +...+..++..+...|++++|++.++...+ ..|+ ...+..+..++.
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~ 682 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWA 682 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHH
Confidence 899999999999999999999999 578 567899999999999999999999998873 3443 445677888999
Q ss_pred hcCCHHHHHHHHHhC-CCC----C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002718 731 RSGQLNKALKLIQEM-PFE----A---DDVIWRTLLSICKIHGNVEVAEEAASSLLQ 779 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~-~~~----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 779 (888)
+.|++++|.++++++ ... | +..++..+...+...|+.+.|+..+++++.
T Consensus 683 ~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 683 ALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999987 221 2 234677778889999999999999999986
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.3e-22 Score=235.36 Aligned_cols=620 Identities=10% Similarity=-0.007 Sum_probs=366.1
Q ss_pred CchhHHHHhhhhCCC--C-CceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHHhcccCCchhHhHHH
Q 002718 126 GEMGIARTLFEAMPE--R-DVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKACSILEDGDFGVQLH 201 (888)
Q Consensus 126 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~ 201 (888)
|++++|...|+...+ | +...+..|...|.+.|++++|+..+++..+. .|+ ..+..++.. .++...+..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~---i~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAA---IPVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHH---hccChhHHHHH
Confidence 777777777776654 3 3445666667777777777777777766642 222 222222211 15555555555
Q ss_pred HHHHHhCCCCChhhHHHHHHh--------hhcCCChhhHHHHhcccCCCC--hhH-HHHHHHHHHhcCChhHHHHHHHHH
Q 002718 202 CFAMKMGFDKDVVTGSALVDM--------YAKCKKLDDSVSLFNRMSERN--WVS-WNTVIAGCVQNYKFIEALKLFKIM 270 (888)
Q Consensus 202 ~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~~m 270 (888)
+.+++..+. +..++..+... |.+.+....+++ .+...++ ... .-.+...|.+.|++++|+.++.++
T Consensus 132 e~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 555554322 22233333332 444433333333 1111121 222 222245555555555555555555
Q ss_pred HHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhc-CCChhHHHHHhccCCCCCCccHH
Q 002718 271 QKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAK-CNNMSDAQKVFNSLPNCGLQSYN 349 (888)
Q Consensus 271 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~ 349 (888)
.+.+.. +......|-..|.. .++ +.+..+++.....+...+.
T Consensus 209 ~k~~pl------------------------------------~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ 251 (987)
T PRK09782 209 RQQNTL------------------------------------SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRI 251 (987)
T ss_pred HhcCCC------------------------------------CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHH
Confidence 554321 12222333334443 233 4444444433233444555
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCC-CCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCch-hhhHHHHHhhhc
Q 002718 350 AIIVGYAQNGQGVEALQLFRLLQKSGLG-FNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNI-CVANSILDMYGK 427 (888)
Q Consensus 350 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~ 427 (888)
.+...|.+.|+.++|.++++++...-.. |...++...+.-....... +..-+.. .+.++. ...-.+++.+.+
T Consensus 252 ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~ 325 (987)
T PRK09782 252 TYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ--ALANYTV----QFADNRQYVVGATLPVLLK 325 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh--hccchhh----hhHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555443222 4444443332222211100 0000000 000000 112233566677
Q ss_pred cCChHHHHHHHhhcCCCCeeeHHHHHH--HHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHH
Q 002718 428 CQDVIEACHVFDEMERRDAVSWNAIIA--VQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHS 505 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 505 (888)
.+.++.+.++.+ ....+.. ..+. +....+...++...+..|.+.. +-+....-.+--.....|+.++|.+++.
T Consensus 326 ~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 326 EGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred ccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 777776666533 2222221 1222 1223355556666666665531 1122223233333455667777777777
Q ss_pred HHHHh--CCCCchhHHHHHHHHHHhcCC---HHHHHHH-------------------------HHhcCC---C--CcccH
Q 002718 506 RIIKS--GMGSNLFVGSALIDMYCKCGM---VEEAKKI-------------------------LKRTEE---R--DVVSW 550 (888)
Q Consensus 506 ~~~~~--g~~~~~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~ 550 (888)
..... +-..+....+-|+..|.+.+. ...+..+ +..... . +...|
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 66542 112234445566666666655 2222222 111111 2 44567
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhc
Q 002718 551 NAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKC 630 (888)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 630 (888)
..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|...++.+... .|+...+..+...+.+.
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 777777776 8888999988887765 477655444455556899999999999987654 33444456667788899
Q ss_pred CCHHHHHHHHHhCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002718 631 GNVQDSRIMFEKSPKR---DFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFN 707 (888)
Q Consensus 631 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 707 (888)
|+.++|...++..... +...+..+.......|++++|+..|++..+ ..|+...+..+..++.+.|++++|+..|+
T Consensus 556 Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 556 GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999877633 223333333444556999999999999998 68888889999999999999999999999
Q ss_pred HhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002718 708 VMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQD 784 (888)
Q Consensus 708 ~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 784 (888)
+... +.|+ ...+..+...+...|++++|++.+++. ...| ++..+..+..++...|+++.|+..++++++++|++
T Consensus 634 ~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 634 AALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9984 4554 557888999999999999999999987 4555 67789999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 785 SSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
.......+++.....+++.|.+-++..-
T Consensus 711 a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 711 ALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988666443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=2.6e-21 Score=224.80 Aligned_cols=677 Identities=10% Similarity=-0.050 Sum_probs=419.2
Q ss_pred HHHHHhh--ccCCCchhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCC--CCcchhhHHHHHHHhcC
Q 002718 51 RIFQELT--HDQAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQ--RDVVSWNALIFGYAVRG 126 (888)
Q Consensus 51 ~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 126 (888)
.++.+.. ..|++++|...|.+.++..+.. ..++..|...|.+.|+.++|+..+++..+ |+-..|..++..+ +
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~ 122 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---P 122 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---c
Confidence 3444433 3489999999999999876444 78889999999999999999999999876 4333333333333 8
Q ss_pred chhHHHHhhhhCCC--C-CceehHHHHHH--------HhhCCChhhHHHHHHHHHhcCCCCCC-chHHHH-HHHhcccCC
Q 002718 127 EMGIARTLFEAMPE--R-DVISWNSLLSG--------YLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVA-LKACSILED 193 (888)
Q Consensus 127 ~~~~A~~~~~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~l-l~~~~~~~~ 193 (888)
+.++|...++++.+ | +...+..+... |.+.+...++++ .... ...|. .++... .+.+...++
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~-~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATF-AASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----Hhhh-CCCCCcHHHHHHHHHHHHHHhC
Confidence 99999999999974 4 34445455444 666644444444 3222 44444 444444 899999999
Q ss_pred chhHhHHHHHHHHhCCCCChhhHHHHHHhhhc-CCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002718 194 GDFGVQLHCFAMKMGFDKDVVTGSALVDMYAK-CKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQK 272 (888)
Q Consensus 194 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (888)
++.+..++..+.+.++. +..-...|..+|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++..
T Consensus 198 w~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 198 WSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 99999999999998754 34445667778887 477 9999998865567888999999999999999999999999876
Q ss_pred cCCC-CChhhHHHHHHHhhcCCChh-HHHHHHHHHHHhCCCCc-hhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHH
Q 002718 273 IGVG-ISQSTYASILRSCAALSNLK-LGTQLHAHALKTDFEMD-VIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYN 349 (888)
Q Consensus 273 ~g~~-p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 349 (888)
.-.. |...++..++.- .+... .+..-+.. .+.++ ....-.++..+.+.++.+.+.++.+ ....+. .
T Consensus 276 ~~~~~~~~~~~~~~l~r---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-- 344 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSK---YSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M-- 344 (987)
T ss_pred cccCCCccHHHHHHHHh---ccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--
Confidence 4333 555555555433 33221 11111111 11111 1223345788888899988887744 222222 1
Q ss_pred HHHHH--HHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHh-c-CCCchhhhHHHHHhh
Q 002718 350 AIIVG--YAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKS-N-LWSNICVANSILDMY 425 (888)
Q Consensus 350 ~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~ 425 (888)
..+.. ....+...++...+..|.+.... +....--+---....|+.++|.+++...... + -..+..+.+.|+..|
T Consensus 345 ~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 345 LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL 423 (987)
T ss_pred HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH
Confidence 22222 22335666666666666554110 1111111111122344455555555544431 1 112333344555555
Q ss_pred hccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHH
Q 002718 426 GKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHS 505 (888)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 505 (888)
.+.+......+...-... ++..+- |.-.|+...+.....
T Consensus 424 ~~~~~~~~~~~~~~l~~~-----------------------------------~~~~~~------~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 424 ESHPYLATPAKVAILSKP-----------------------------------LPLAEQ------RQWQSQLPGIADNCP 462 (987)
T ss_pred HhCCcccchHHHHHhccc-----------------------------------cccchh------HHHHhhhhhhhhhHH
Confidence 555443222222211111 111111 111122222222222
Q ss_pred HHHHh-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHH--HHcCCChHHHHHHHHHHHHCCCC
Q 002718 506 RIIKS-GM-GS--NLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISG--FSGAKRSEDAHKFFSYMLKMGVK 579 (888)
Q Consensus 506 ~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~ 579 (888)
...+. +. ++ +...+..+..++.. ++.++|...+.+.....+..++.+..+ +...|++++|...|+++... .
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 22211 11 22 44455555555554 566666665555443222233333333 34667777777777765443 3
Q ss_pred CCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--CCCHHHHHHHHHH
Q 002718 580 PDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--KRDFVTWNAMICG 657 (888)
Q Consensus 580 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 657 (888)
|+...+..+..++.+.|+.+.|...+...++... .+...+..+.....+.|++++|...+++.. .|+...|..+...
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~ 618 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATI 618 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444444555566667777777777777766542 112222222223334588888888888766 4677788888889
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCH
Q 002718 658 YAHHGLGEEALKVFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQL 735 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~ 735 (888)
+.+.|+.++|+..|++..+ ..|+ ...+..+..++...|+.++|+..|++..+ +.| +...+..+..++.+.|++
T Consensus 619 l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999988 6784 46777788889999999999999998884 345 355778889999999999
Q ss_pred HHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCc
Q 002718 736 NKALKLIQEM-PFEADD-VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMW 801 (888)
Q Consensus 736 ~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 801 (888)
++|++.+++. ...|+. .+............+++.+.+.+++....+|+.. +....+.++...+++
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 9999999887 567754 5666667777778888999999999999998766 777777777777766
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-19 Score=185.38 Aligned_cols=378 Identities=15% Similarity=0.165 Sum_probs=326.3
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHH-
Q 002718 415 ICVANSILDMYGKCQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKA- 490 (888)
Q Consensus 415 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~- 490 (888)
...|+.+.+.+-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHH
Confidence 356888999999999999999999988753 567899999999999999999999999888 57777665544444
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHcCCChHHHH
Q 002718 491 CAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERD---VVSWNAIISGFSGAKRSEDAH 567 (888)
Q Consensus 491 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 567 (888)
....|++.+|...+.+.++.. +.-...|+.|...+-..|+...|..-|++...-| ..+|-.|...|...+.+++|+
T Consensus 194 lka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 345788999999998888765 3445678888889999999999999999987544 357888999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCC-cchhhhhccchhhcCCHHHHHHHHHhCC-
Q 002718 568 KFFSYMLKMGVKPD-DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSD-VYISSTLVDMYSKCGNVQDSRIMFEKSP- 644 (888)
Q Consensus 568 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~- 644 (888)
..+.+.... .|+ .+.+..+...|-..|.++.|+..+++.+... |+ +..|+.|..++-..|++.+|...+.+..
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 999888764 565 5677777778889999999999999998854 33 5678999999999999999999999877
Q ss_pred --CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-h
Q 002718 645 --KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-E 720 (888)
Q Consensus 645 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~ 720 (888)
..-..+.+.|...|...|.++.|..+|....+ +.|.- ..++.|...|-+.|++++|+..++..+ .|.|+. +
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAd 423 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFAD 423 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHH
Confidence 33456889999999999999999999999999 88965 689999999999999999999999988 788985 4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 002718 721 HYSCMVDILGRSGQLNKALKLIQEM-PFEAD-DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADA 798 (888)
Q Consensus 721 ~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 798 (888)
.|+.|...|-..|+.++|.+.+.+. .+.|. ....+.|.+.++..|++.+|+..++.+++++|+.+.+|..+.-.+.-.
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 8999999999999999999999887 66774 568999999999999999999999999999999999999999999988
Q ss_pred CCchHH
Q 002718 799 GMWDKL 804 (888)
Q Consensus 799 g~~~~a 804 (888)
.+|.+-
T Consensus 504 cdw~D~ 509 (966)
T KOG4626|consen 504 CDWTDY 509 (966)
T ss_pred hcccch
Confidence 899884
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-18 Score=177.13 Aligned_cols=355 Identities=16% Similarity=0.207 Sum_probs=305.7
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCch-hHHHHH
Q 002718 445 DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEP-DEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNL-FVGSAL 522 (888)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~l 522 (888)
-..+|..+...+-..|+.++|+..++.+++. +| ....|..+..++...|+.+.|.+.+.+.++.+ |+. ...+-+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcch
Confidence 3467888999999999999999999999984 56 45688899999999999999999999988775 443 344455
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCcccH
Q 002718 523 IDMYCKCGMVEEAKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPD-DFTYATLLDTCGNLATV 598 (888)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~ 598 (888)
...+-..|++++|...+.+..+ | -.++|+.|...+-..|+...|+..|.+.... .|+ ...|..|-..+...+.+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcc
Confidence 5666678999999998877664 3 2578999999999999999999999998864 666 45777888888888889
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002718 599 GLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--KRD-FVTWNAMICGYAHHGLGEEALKVFENME 675 (888)
Q Consensus 599 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 675 (888)
+.|...+........ .....+..+.-.|-..|.++-|+..+++.. +|+ ...|+.|..++-..|++.+|.+.|.+..
T Consensus 269 d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred hHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999888887776532 346677788899999999999999999877 444 4799999999999999999999999999
Q ss_pred HCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 002718 676 LENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKLIQEM-PFEAD-D 751 (888)
Q Consensus 676 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~ 751 (888)
. +.|+. .+.+.|...+...|.+++|..+|.... .+.|... ..+.|...|-.+|++++|+.-+++. .++|+ .
T Consensus 348 ~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 348 R--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred H--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 9 78866 689999999999999999999999987 5567644 6789999999999999999999987 78886 4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 752 VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 752 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
..++.+...|...|+++.|.+.+.+++..+|.-..++..|+.+|-..|+.++|..-++..
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999998776644
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=6.8e-16 Score=167.27 Aligned_cols=302 Identities=15% Similarity=0.075 Sum_probs=148.6
Q ss_pred hhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCC------CCcc-----hhhHHHHHHHhcC------
Q 002718 64 PGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQ------RDVV-----SWNALIFGYAVRG------ 126 (888)
Q Consensus 64 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~-----~~~~li~~~~~~g------ 126 (888)
++.++..-+...+ ....+|......|++.|..++...+++.-.. .++. .++.+...|+..+
T Consensus 26 D~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~ 103 (1018)
T KOG2002|consen 26 DATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKK 103 (1018)
T ss_pred ChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666665555443 3345677788899999999999999987762 1222 1222222232222
Q ss_pred -----chhHHHHhhhhCCCCCceehHHH---HHHHhhCCC--hhhHHHHHHHHHhcCCCCCCchHHHHHHHhc--ccCCc
Q 002718 127 -----EMGIARTLFEAMPERDVISWNSL---LSGYLLVGD--FSKAIDVFVEMGRLSGMVDNRSFAVALKACS--ILEDG 194 (888)
Q Consensus 127 -----~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~ 194 (888)
....|..+|+..-.-+...+..+ -..|...|+ .+.|...|....+. .|+..+..+.+||. ..+++
T Consensus 104 ~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~---sp~Nil~LlGkA~i~ynkkdY 180 (1018)
T KOG2002|consen 104 DEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQ---SPDNILALLGKARIAYNKKDY 180 (1018)
T ss_pred chhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhh---CCcchHHHHHHHHHHhccccH
Confidence 22344455554332111111111 112223333 47888888887753 45556666666665 34577
Q ss_pred hhHhHHHHHHHHhC--CCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHH-H-----hcCChhHHHHH
Q 002718 195 DFGVQLHCFAMKMG--FDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGC-V-----QNYKFIEALKL 266 (888)
Q Consensus 195 ~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-~-----~~g~~~~A~~~ 266 (888)
..+..+|..++... ..||+.+. +...+.++|+.+.|+..|.+..+-|+..-++++.-. . ....+..++.+
T Consensus 181 ~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 77888888766543 34555442 234455778888888877777664443333332211 1 11222333333
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCc--hhHHhHHHHHhhcCCChhHHHHHhccCCCC-
Q 002718 267 FKIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMD--VIVGTATLDMYAKCNNMSDAQKVFNSLPNC- 343 (888)
Q Consensus 267 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 343 (888)
+...-.. -.-|+...+.|-+.+.-.+++..+..+...+.+...... ...+--+..+|-..|+++.|...|.+....
T Consensus 259 l~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 3332221 122344444555555555555555555555554432111 111233344444445555555444443211
Q ss_pred -C--CccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002718 344 -G--LQSYNAIIVGYAQNGQGVEALQLFRLLQK 373 (888)
Q Consensus 344 -~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 373 (888)
| +..+-.+.+.+.+.|+.+.+...|+....
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 1 12333344444445555555544444443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=2e-17 Score=190.12 Aligned_cols=386 Identities=13% Similarity=0.063 Sum_probs=287.5
Q ss_pred hHHHHHhhhccCChHHHHHHHhhcCC--CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHhcc
Q 002718 418 ANSILDMYGKCQDVIEACHVFDEMER--RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQ 494 (888)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 494 (888)
+......|.+.|+++.|...|++... |+...|..+..+|.+.|++++|++.+.+.++. .|+ ...+..+-.++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 55677888999999999999988654 56777888888999999999999999998874 454 45777788889999
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHH-----------------------
Q 002718 495 QALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWN----------------------- 551 (888)
Q Consensus 495 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------------- 551 (888)
|++++|...+..+...+-..+... ..++.-+.+....+.+...++.-.. +..++.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999988876655432222222 2222211111112222222222111 111111
Q ss_pred ----------HHHHH---HHcCCChHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCC
Q 002718 552 ----------AIISG---FSGAKRSEDAHKFFSYMLKMG-VKPD-DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSD 616 (888)
Q Consensus 552 ----------~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 616 (888)
.+... ....+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++..+.... ..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-Cc
Confidence 11100 012367899999999998865 3444 44566666777889999999999999988642 23
Q ss_pred cchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002718 617 VYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRA 692 (888)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 692 (888)
...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..|++..+ +.| +...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHH
Confidence 5567788888999999999999998765 45678999999999999999999999999998 678 45678888899
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHH
Q 002718 693 CAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM-PFEADD-V-------IWRTLLSICK 762 (888)
Q Consensus 693 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~ 762 (888)
+.+.|++++|+..|++.... .| +...|..+..++...|++++|++.+++. .+.|+. . .++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999998853 34 3567888999999999999999999986 444431 1 1222222334
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 763 IHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 763 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
..|+++.|+..++++++++|++..++..++++|...|++++|.+.++...+
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999887654
No 17
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.83 E-value=3e-16 Score=167.64 Aligned_cols=704 Identities=11% Similarity=0.024 Sum_probs=404.2
Q ss_pred hHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCC----CCcchhhHHHHHHHhcCchhHHHHhhhhCCC
Q 002718 65 GKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQ----RDVVSWNALIFGYAVRGEMGIARTLFEAMPE 140 (888)
Q Consensus 65 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (888)
...++..+...|+.|+.+||.+||..||..|+++.|- +|..|.- -+...|+.++.+...+++.+.+. +
T Consensus 9 ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 9 PTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred cchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 4467788889999999999999999999999999998 8888864 36678999999999999998886 4
Q ss_pred CCceehHHHHHHHhhCCChhh---HHHHHHHHHhc---CCCCCC-chHHHHHHHhcccC-Cc------hhHhHHHHHHHH
Q 002718 141 RDVISWNSLLSGYLLVGDFSK---AIDVFVEMGRL---SGMVDN-RSFAVALKACSILE-DG------DFGVQLHCFAMK 206 (888)
Q Consensus 141 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~---~~~~~~-~~~~~ll~~~~~~~-~~------~~a~~~~~~~~~ 206 (888)
|.+.+|..|..+|.+.||... ..+.+.....+ .|+... .-+...+++|...- +- .--+.+++..++
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999998754 22222222211 011111 22222222221110 00 001223333333
Q ss_pred hCC-CCChhhHHHH---HHhh-hcCCChhhHHHHhcccCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 002718 207 MGF-DKDVVTGSAL---VDMY-AKCKKLDDSVSLFNRMSE-RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQS 280 (888)
Q Consensus 207 ~g~-~~~~~~~~~l---i~~~-~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 280 (888)
.+. .|-..-++.. ++-. .....+++-...-....+ ++..+|..++.+-..+|+.+.|..++.+|.+.|.+.+..
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 331 1111111111 1111 111223333333333333 788899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCC
Q 002718 281 TYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQ 360 (888)
Q Consensus 281 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 360 (888)
-|-.+|-+ .++......++.-|...|+.|+..++...+-...+.|....+....+.-..-....+..+..+...+.+
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 88888755 788888999999999999999999988777766665553333222111000001123333333211111
Q ss_pred h-----hHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCC---CchhhhHHHHHhhhccCChH
Q 002718 361 G-----VEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLW---SNICVANSILDMYGKCQDVI 432 (888)
Q Consensus 361 ~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 432 (888)
. .-.+..+.+..-.|+......|....+.. ..|.-+...++.+.+...-.. .++..+..++
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l---------- 386 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL---------- 386 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHHH----------
Confidence 1 12222233333334443333333222221 234445555555554332211 1122232223
Q ss_pred HHHHHHhhcCCCCe-eeHH--------------HHHHHHHhCCChhHHHHHHHHHHHcCC----C-------CCcchHHH
Q 002718 433 EACHVFDEMERRDA-VSWN--------------AIIAVQAQNGNEEETLFYFISMLHAIM----E-------PDEFTYGS 486 (888)
Q Consensus 433 ~A~~~~~~~~~~~~-~~~~--------------~li~~~~~~g~~~~A~~~~~~m~~~g~----~-------p~~~t~~~ 486 (888)
.+.|.+...+.. ..++ ..+.-+...-+...+++.+..+..... . |-...-+.
T Consensus 387 --rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 387 --RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred --HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 233333332211 1111 011111111122222222222211111 1 11122344
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc------ccHHHHHHHHHcC
Q 002718 487 VLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDV------VSWNAIISGFSGA 560 (888)
Q Consensus 487 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~ 560 (888)
++-.|++.-+..+++..-+.....-++ ..|..||+.+....+.+.|..+.++...+|. .-+..+.+...+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 555555555555555444433332222 5789999999999999999999999987654 3477888899999
Q ss_pred CChHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHH
Q 002718 561 KRSEDAHKFFSYMLKMGV-KPD-DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRI 638 (888)
Q Consensus 561 g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 638 (888)
+...++..++.++.+.-. .|+ ..++-.++...+..|..+.-.++++.+...|+.-+ .-++....+.++...|.+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~e 617 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQE 617 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhh
Confidence 999999999999987422 232 45677788888889999999999999998887542 445666778888888888
Q ss_pred HHHhCC---CCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh----
Q 002718 639 MFEKSP---KRDFVTWNAMICGYAHH--GLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVM---- 709 (888)
Q Consensus 639 ~~~~~~---~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m---- 709 (888)
+++... ++.+..-..+.+.+.++ .+.+++..+-.. +..|.+.|++.+|.++.+.=
T Consensus 618 a~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~----------------iq~f~k~g~~~~a~di~etpG~r~ 681 (1088)
T KOG4318|consen 618 APEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIP----------------IQKFEKLGSCVDAGDITETPGVRC 681 (1088)
T ss_pred cchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcch----------------hHHHHhcccccchhhccccCcccc
Confidence 776433 22222222222222111 112222211111 01144455555444443310
Q ss_pred -------HhccCCCC---------ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC---CHHHH
Q 002718 710 -------LSDYSLHP---------QLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHG---NVEVA 770 (888)
Q Consensus 710 -------~~~~~~~p---------~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a 770 (888)
.....+.| +..+..-|...|.+.|+++.|..++.++++-|++.....|.+.++++. ++-++
T Consensus 682 r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~ 761 (1088)
T KOG4318|consen 682 RNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEI 761 (1088)
T ss_pred cCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhH
Confidence 00001111 111223367788899999999999999998899888888888887764 56677
Q ss_pred HHHHHHHHhcCCCCc---chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 771 EEAASSLLQLDPQDS---STYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 771 ~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
...-+++-+..|..+ ..|.-.+-+..+..+.+.|.+++...++..
T Consensus 762 q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~ 809 (1088)
T KOG4318|consen 762 QAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQL 809 (1088)
T ss_pred HHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHcc
Confidence 777777777765433 334444444444444446688888877663
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.5e-15 Score=164.62 Aligned_cols=656 Identities=13% Similarity=0.094 Sum_probs=369.3
Q ss_pred CcchhhHHHHHHHhcCchhHHHHhhhhCCC------CCce-----ehHHHHHHHhhCC-----------ChhhHHHHHHH
Q 002718 111 DVVSWNALIFGYAVRGEMGIARTLFEAMPE------RDVI-----SWNSLLSGYLLVG-----------DFSKAIDVFVE 168 (888)
Q Consensus 111 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~-----~~~~li~~~~~~g-----------~~~~A~~~~~~ 168 (888)
-..+|..+...|.+.|..++.+.+++.... .|+. .++.+...|+..+ .+..|..+|..
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 345788888899999999999999998761 1111 2233333332221 12234444443
Q ss_pred HHhcCCCCCCchHHHHHHHhcccCC--chhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCC-----
Q 002718 169 MGRLSGMVDNRSFAVALKACSILED--GDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSE----- 241 (888)
Q Consensus 169 m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 241 (888)
.-.. ....+..+..---.|...++ ++.|.+.|..+++..+ +++-..-.-.......|++-.|+.+|.....
T Consensus 120 A~ki-~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKI-DMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHh-hccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 3221 11111000000011112222 3555555555555432 2222211112223344566666666655321
Q ss_pred -CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHH---hhcCCChhHHHHHHHHHHHhCCCCchhH
Q 002718 242 -RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQS-TYASILRS---CAALSNLKLGTQLHAHALKTDFEMDVIV 316 (888)
Q Consensus 242 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 316 (888)
+|+. -.+..+|.+.|+.+.|+.-|.+..+. .|+.. ++..|--. +-....+..|.+++...-+.. .-|+.+
T Consensus 198 ~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~ 272 (1018)
T KOG2002|consen 198 KADVR--IGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVA 272 (1018)
T ss_pred CCCcc--chhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHH
Confidence 2221 12224445566666666666665552 22221 11111100 111223333444443333222 234444
Q ss_pred HhHHHHHhhcCCChhHHHHHhccCCCCC----C--ccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHh
Q 002718 317 GTATLDMYAKCNNMSDAQKVFNSLPNCG----L--QSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSAC 390 (888)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 390 (888)
.+.|.+.|.-.|+++.+..+...+.... + .+|--+..+|...|++++|...|-+-... .||.+
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~--------- 341 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF--------- 341 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc---------
Confidence 4555555555555555555444432211 1 13444445555555555555555443322 22322
Q ss_pred hhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCC----Chh
Q 002718 391 AVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNG----NEE 463 (888)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g----~~~ 463 (888)
+.-+-.|..+|.+.|+++.+...|+.+... +..+...+...|...+ ..+
T Consensus 342 ------------------------~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 342 ------------------------VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred ------------------------cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHH
Confidence 223445677788888888888888777653 3344445555565554 345
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002718 464 ETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRI----IKSGMGSNLFVGSALIDMYCKCGMVEEAKKIL 539 (888)
Q Consensus 464 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 539 (888)
.|..++.+..+.- +-|...|..+-..+-. ++....+.++..+ ...+-++.+.+.|.+...+...|+++.|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 5555555554432 2344455444444433 3333335555443 34555677788888888888888888888888
Q ss_pred HhcCCC-------Ccc------cHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcCcccHHHHHHHH
Q 002718 540 KRTEER-------DVV------SWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFT-YATLLDTCGNLATVGLGMQLH 605 (888)
Q Consensus 540 ~~~~~~-------~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~ 605 (888)
++.... |.. +--.+...+-..++++.|.+.|..+.+. .|+.+. |.-++......+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 776532 221 1122344555667888888888888775 566543 333332233446777777777
Q ss_pred HHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHh------------CCCHHHHH
Q 002718 606 AQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP-----KRDFVTWNAMICGYAH------------HGLGEEAL 668 (888)
Q Consensus 606 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~------------~g~~~~A~ 668 (888)
..+.... ..++..++.+.+.|.+...+.-|.+-|..+. .+|..+.-+|.+.|.+ .+..++|+
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 7776642 2455566666667777777777766444332 3455555555554442 23467888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 002718 669 KVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-- 745 (888)
Q Consensus 669 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-- 745 (888)
++|.+.+. ..| |..+-+.+.-.+++.|++.+|..+|.++.+.. .....+|-.+...|...|++-.|+++|+..
T Consensus 633 q~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk 708 (1018)
T KOG2002|consen 633 QLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK 708 (1018)
T ss_pred HHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 677 77888888888888999999999998887542 234556788888888999999999888876
Q ss_pred --CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-------------------cCCchHH
Q 002718 746 --PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYAD-------------------AGMWDKL 804 (888)
Q Consensus 746 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-------------------~g~~~~a 804 (888)
.-..++.+...|..++...|.+.+|...+.+++.+.|.|+.....++-+..+ .+..++|
T Consensus 709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2234677888888888888999999999999999999888877666655443 3455667
Q ss_pred HHHHHHHHhCCCc
Q 002718 805 SYTRRLMRQNKVR 817 (888)
Q Consensus 805 ~~~~~~m~~~~~~ 817 (888)
.++|..|...+-+
T Consensus 789 ~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 789 RRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcCCC
Confidence 7778777765543
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=3.7e-17 Score=178.47 Aligned_cols=241 Identities=12% Similarity=0.072 Sum_probs=165.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhh
Q 002718 550 WNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSK 629 (888)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 629 (888)
+..+...|.+.|++++|..+|+++.+.. .++..++..+...+...|++++|.+.+..+.+.+..+...
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----------- 177 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----------- 177 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-----------
Confidence 4445555555556666666665555431 2334455555555555555555555555554432211000
Q ss_pred cCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002718 630 CGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNV 708 (888)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~ 708 (888)
.....|..+...+...|++++|.+.|+++.+ ..|+ ..++..+...+.+.|++++|.++|++
T Consensus 178 ----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 178 ----------------EIAHFYCELAQQALARGDLDAARALLKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred ----------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0012345566777888888888888888887 4564 45777788888888999999998888
Q ss_pred hHhccCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 709 MLSDYSLHPQ--LEHYSCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 709 m~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
+... .|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|+++.|...++++++..|++.
T Consensus 240 ~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 240 VEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred HHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 8743 343 346778888889999999999988887 4567777778888889999999999999999999999776
Q ss_pred chHHHHHHHHHH--cCCchHHHHHHHHHHhCCCccCCCee
Q 002718 786 STYILLSNIYAD--AGMWDKLSYTRRLMRQNKVRKEPGCS 823 (888)
Q Consensus 786 ~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~s 823 (888)
.....+...+.. .|+.+++..+++.|.++++++.|.+.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 444344333322 56899999999999988888888743
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=4.6e-16 Score=177.84 Aligned_cols=350 Identities=11% Similarity=0.019 Sum_probs=270.6
Q ss_pred ccCChHHHHHHHhhcCCC------CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHH
Q 002718 427 KCQDVIEACHVFDEMERR------DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYG 500 (888)
Q Consensus 427 ~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 500 (888)
+..+++.-.-.|..-+++ +....-.++..+.+.|++++|+.++...+.....+ ...+..+..++...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 444555444445444432 33344556777888999999999999988864433 33444455666779999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMG 577 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 577 (888)
...++.+.+.. |.+...+..+...+...|++++|...|++... | +...|..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998876 56677888889999999999999999998864 3 45678889999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHH
Q 002718 578 VKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAM 654 (888)
Q Consensus 578 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 654 (888)
..+ ...+.. +..+...|++++|...+..+++....++......+...+.+.|+.++|...|++.. +.+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 33467789999999999988776543444445556677889999999999998766 4567788889
Q ss_pred HHHHHhCCCHHH----HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHH
Q 002718 655 ICGYAHHGLGEE----ALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDI 728 (888)
Q Consensus 655 i~~~~~~g~~~~----A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 728 (888)
...+...|++++ |+..|++..+ ..| +..++..+...+.+.|++++|+..+++.... .|+ ...+..+..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 999999999885 8999999998 678 4568889999999999999999999998843 454 4467778899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 729 LGRSGQLNKALKLIQEM-PFEADDVIWR-TLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
|.+.|++++|.+.++++ ...|+...+. .+..++...|+.+.|...++++++..|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999987 3567654443 455678889999999999999999999864
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.5e-15 Score=175.84 Aligned_cols=388 Identities=10% Similarity=0.052 Sum_probs=267.9
Q ss_pred HHHHHhhhccCChHHHHHHHhhcCC-C--CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHhcc
Q 002718 419 NSILDMYGKCQDVIEACHVFDEMER-R--DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQ 494 (888)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 494 (888)
.-.+......|+.++|++++..... . +...+..+...+...|++++|..+|++.++. .|+ ...+..+...+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3445555666777777777776653 2 2334677777777777777777777777663 343 34455566667777
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHcCCChHHHHHHHH
Q 002718 495 QALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFS 571 (888)
Q Consensus 495 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 571 (888)
|++++|...++.+.+.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++|++.++
T Consensus 97 g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 97 GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77788877777777663 44555 66777777778888888887777764 2 33445566667777777777777776
Q ss_pred HHHHCCCCCCH------HHHHHHHHHh-----cCcccH---HHHHHHHHHHHHh-CCCCCcch--hhhh---ccchhhcC
Q 002718 572 YMLKMGVKPDD------FTYATLLDTC-----GNLATV---GLGMQLHAQIIKQ-EMQSDVYI--SSTL---VDMYSKCG 631 (888)
Q Consensus 572 ~m~~~g~~p~~------~t~~~ll~a~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~~--~~~l---i~~~~~~g 631 (888)
.... .|+. ......+... ...+.+ +.|.+.++.+.+. ...|+... .... +..+...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 5543 2221 0111111111 122233 6677777777754 22232211 1111 22345668
Q ss_pred CHHHHHHHHHhCCCCC---HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 002718 632 NVQDSRIMFEKSPKRD---FV-TWNAMICGYAHHGLGEEALKVFENMELENVKPN-----HATFISVLRACAHIGLVEKG 702 (888)
Q Consensus 632 ~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a 702 (888)
++++|+..|+.+...+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 9999999999887421 11 1122567899999999999999998873 442 24566677788999999999
Q ss_pred HHHHHHhHhccC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCH
Q 002718 703 LHYFNVMLSDYS----------LHPQ---LEHYSCMVDILGRSGQLNKALKLIQEM-P-FEADDVIWRTLLSICKIHGNV 767 (888)
Q Consensus 703 ~~~~~~m~~~~~----------~~p~---~~~~~~l~~~l~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~ 767 (888)
..+++.+..... -.|+ ...+..++.++...|++++|++.++++ . .+.++..+..+...+...|+.
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 999999885421 1123 224567788899999999999999987 3 344677899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 768 EVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 768 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
+.|+..++++++++|++...+..++..+...|+|++|..+.+.+.+..
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999988776543
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=7.6e-17 Score=176.05 Aligned_cols=282 Identities=15% Similarity=0.165 Sum_probs=185.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhcCC
Q 002718 456 QAQNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSN---LFVGSALIDMYCKCGM 531 (888)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~ 531 (888)
+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 33455555666666666553 232 33455555555666666666666666555432111 2345666777777777
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCcccHHHHHHH
Q 002718 532 VEEAKKILKRTEE---RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDD----FTYATLLDTCGNLATVGLGMQL 604 (888)
Q Consensus 532 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~ 604 (888)
+++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7777777777754 24456777777777777777777777777765433221 1234455566677777777777
Q ss_pred HHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 002718 605 HAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--KRD--FVTWNAMICGYAHHGLGEEALKVFENMELENVK 680 (888)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 680 (888)
+..+.+... .+...+..+...|.+.|++++|.+.|+++. .|+ ..+++.++.+|...|+.++|.+.++++.+ ..
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~ 279 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE--EY 279 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 777776542 234456667777888888888888887766 233 24567788888888888888888888877 46
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhh---cCCHHHHHHHHHhC
Q 002718 681 PNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGR---SGQLNKALKLIQEM 745 (888)
Q Consensus 681 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~---~g~~~~A~~~~~~~ 745 (888)
|+...+..++..+.+.|++++|..+++++.+ ..|+...+..++..+.. .|+.++|..+++++
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 7666667777888888888888888887773 35777777777766553 45778888877766
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=4.2e-15 Score=170.90 Aligned_cols=439 Identities=9% Similarity=-0.014 Sum_probs=298.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhc
Q 002718 348 YNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGK 427 (888)
Q Consensus 348 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 427 (888)
+......+.+.|++++|+..|++.... .|+...|..+-.++...|+++.+...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667788899999999999998764 5677777777778888888888888888877653 2244567778888888
Q ss_pred cCChHHHHHHHhhcCCCCe---eeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 002718 428 CQDVIEACHVFDEMERRDA---VSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIH 504 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 504 (888)
.|++++|..-|......+. .....++..+.. ..+........+. .+++...+..+ ..+...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFV-GNYLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHH-HHHHHHccCCcchhhh
Confidence 8888888877755432111 111111111111 1222222222222 11222222222 1221111111111111
Q ss_pred HHHHHhCCCCch-hHHHHHHHH---HHhcCCHHHHHHHHHhcCCC------CcccHHHHHHHHHcCCChHHHHHHHHHHH
Q 002718 505 SRIIKSGMGSNL-FVGSALIDM---YCKCGMVEEAKKILKRTEER------DVVSWNAIISGFSGAKRSEDAHKFFSYML 574 (888)
Q Consensus 505 ~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 574 (888)
....+ ..+.. ..+..+... ....+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 01110 011111111 12346899999999887642 34568888888999999999999999998
Q ss_pred HCCCCCC-HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHH
Q 002718 575 KMGVKPD-DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVT 650 (888)
Q Consensus 575 ~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~ 650 (888)
+. .|+ ...|..+...+...|++++|...++.+++... .+..++..+...|...|++++|...|++.. +.+...
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~ 435 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS 435 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence 75 455 55777788888899999999999999988643 456788889999999999999999999876 456778
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--------H
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE--------H 721 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--------~ 721 (888)
|..+...+.+.|++++|+..|++... ..| +...+..+..++...|++++|+..|++... +.|+.. .
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHH
Confidence 88899999999999999999999988 567 567888999999999999999999999873 334311 1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcC
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEM-PFEADD-VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAG 799 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 799 (888)
+......+...|++++|.+++++. ...|+. ..+..+...+...|+++.|...+++++++.+..... ....
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~ 582 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAI 582 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHH
Confidence 122223344579999999999986 566654 568889999999999999999999999998754332 2233
Q ss_pred CchHHHHHHHHHHh
Q 002718 800 MWDKLSYTRRLMRQ 813 (888)
Q Consensus 800 ~~~~a~~~~~~m~~ 813 (888)
.|.+|.++....++
T Consensus 583 ~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 583 SYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666555544
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=2.1e-15 Score=172.47 Aligned_cols=350 Identities=11% Similarity=0.009 Sum_probs=277.4
Q ss_pred HhCCChhHHHHHHHHHHHcC--CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 002718 457 AQNGNEEETLFYFISMLHAI--MEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEE 534 (888)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 534 (888)
.+..+++.-.-.|....++. -.-+..-...++..+.+.|+++.|..++....... +.+......++......|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34455555544444433221 11234456677888899999999999999998876 3345555556677778999999
Q ss_pred HHHHHHhcCC--C-CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 002718 535 AKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPD-DFTYATLLDTCGNLATVGLGMQLHAQIIK 610 (888)
Q Consensus 535 A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 610 (888)
|...|+++.. | +...|..+...+.+.|++++|...|++..+. .|+ ...+..+...+...|++++|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999874 3 4567888889999999999999999999875 454 56777888889999999999999998877
Q ss_pred hCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHH
Q 002718 611 QEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPK----RDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHAT 685 (888)
Q Consensus 611 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t 685 (888)
....+.. .+..+ ..+...|++++|...++.+.+ ++...+..+...+...|++++|+..|+++.+ ..| +...
T Consensus 173 ~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~ 248 (656)
T PRK15174 173 EVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAAL 248 (656)
T ss_pred hCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHH
Confidence 6543333 33233 247889999999999988653 2334455567788999999999999999998 567 5567
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 002718 686 FISVLRACAHIGLVEK----GLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLL 758 (888)
Q Consensus 686 ~~~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 758 (888)
+..+..++...|++++ |+..|+++.+ +.|+ ...+..++..+.+.|++++|...+++. ...| ++.++..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8889999999999986 8999999984 4454 557889999999999999999999987 4555 466788888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
.++...|+++.|...++++++.+|+++..+..++.++...|++++|...++...+...
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 8999999999999999999999999888788889999999999999999887765433
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=1.3e-14 Score=169.65 Aligned_cols=365 Identities=8% Similarity=-0.011 Sum_probs=260.9
Q ss_pred hhHHHHHhhhccCChHHHHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002718 417 VANSILDMYGKCQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAG 493 (888)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 493 (888)
.+..+...+.+.|++++|..++++... .+...+..++..+...|+.++|+..+++..+. .|+...+..+..++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 456667777777777777777777433 24455667777778888888888888888775 3433336666667778
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc--------cHHHHHHHHH-----cC
Q 002718 494 QQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVV--------SWNAIISGFS-----GA 560 (888)
Q Consensus 494 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~-----~~ 560 (888)
.|+.+.|...++.+.+.. +.+...+..+..++...+..+.|.+.++.... ++. ....++.... ..
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 888888888888888775 44566666777788888888888888887664 211 1122222221 12
Q ss_pred CCh---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHhcCcccHHHHHHHHHHHHHhCCC-CCcchhhhhccchhhc
Q 002718 561 KRS---EDAHKFFSYMLKM-GVKPDDF-TY----ATLLDTCGNLATVGLGMQLHAQIIKQEMQ-SDVYISSTLVDMYSKC 630 (888)
Q Consensus 561 g~~---~~A~~~~~~m~~~-g~~p~~~-t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 630 (888)
+++ ++|++.++.+.+. ...|+.. .+ ...+.++...++.++|+..++.+.+.+.. |+ .....+...|...
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~ 285 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKL 285 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhc
Confidence 233 6788888888754 2233321 11 11133445668999999999998887532 22 1222356789999
Q ss_pred CCHHHHHHHHHhCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHH
Q 002718 631 GNVQDSRIMFEKSPKRD-------FVTWNAMICGYAHHGLGEEALKVFENMELEN-----------VKPNH---ATFISV 689 (888)
Q Consensus 631 g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~l 689 (888)
|++++|...|+++...+ ...+..+..++...|++++|.++++++.+.. -.|+. ..+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 99999999998865221 2346667778899999999999999998742 11332 245667
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCH
Q 002718 690 LRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD-DVIWRTLLSICKIHGNV 767 (888)
Q Consensus 690 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 767 (888)
...+...|+.++|+++++++.... +.+...+..++.++...|++++|++.+++. ...|+ ...+..+.......|++
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 778999999999999999998542 234567889999999999999999999988 56675 56777777788899999
Q ss_pred HHHHHHHHHHHhcCCCCcchH
Q 002718 768 EVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 768 ~~a~~~~~~~~~~~p~~~~~~ 788 (888)
+.|+..++++++..|+++...
T Consensus 444 ~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 444 RQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999888554
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=8e-14 Score=137.28 Aligned_cols=341 Identities=13% Similarity=0.103 Sum_probs=215.3
Q ss_pred ceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHHhcccC--CchhH-hHHHHHHHHhCCCCChhhHHH
Q 002718 143 VISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKACSILE--DGDFG-VQLHCFAMKMGFDKDVVTGSA 218 (888)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~g~~~~~~~~~~ 218 (888)
+++=|.|+. ...+|...++.-+|+.|++. +++.. ..-..+++..+-.+ ++-.+ .+.|-.|.+.|-. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 345555554 34478889999999999987 55555 44444443332222 22222 2233333333322 22222
Q ss_pred HHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChhHH
Q 002718 219 LVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLKLG 298 (888)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 298 (888)
|.|.+.+ ++-+...++..+|.+||.|+|+--..+.|.+++.+-.+...+.+..+||.+|.+.. +..+
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhcc
Confidence 3344433 44444445667899999999999999999999999999999999999999998754 4455
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 002718 299 TQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGF 378 (888)
Q Consensus 299 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 378 (888)
+.+..+|+...+.||.+++|+++.+.++.|+++.|++.+ ++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCc
Confidence 899999999999999999999999999999998886543 34444444445555
Q ss_pred CchhHhhHHHHhhhhhchhh-HHHHHHHHHH----hcCCC----chhhhHHHHHhhhccCChHHHHHHHhhcCCC-----
Q 002718 379 NEITLSGAFSACAVIAGYLE-GLQVHGLAIK----SNLWS----NICVANSILDMYGKCQDVIEACHVFDEMERR----- 444 (888)
Q Consensus 379 ~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 444 (888)
.-.+|..+|.-+++.++... +..+...+.. ..+.| |...+..-++.|.+..+.+-|.++-.-+...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 54444444444444443322 1111111111 11111 2223334444444444444444443333321
Q ss_pred ------CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhH
Q 002718 445 ------DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFV 518 (888)
Q Consensus 445 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 518 (888)
...-|..+....++....+.-+..|+.|+-.-+-|+..+...++++....+.++...++|..++..|...+...
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 11234456667777788888888888888888889999999999999889999999999988888875544444
Q ss_pred HHHHHHHHHh
Q 002718 519 GSALIDMYCK 528 (888)
Q Consensus 519 ~~~li~~~~~ 528 (888)
..-+...+++
T Consensus 471 ~eeil~~L~~ 480 (625)
T KOG4422|consen 471 REEILMLLAR 480 (625)
T ss_pred HHHHHHHHhc
Confidence 4444444443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.5e-13 Score=157.10 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=92.6
Q ss_pred hhcCCChhHHHHHhccCCCCCCcc---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHH
Q 002718 324 YAKCNNMSDAQKVFNSLPNCGLQS---YNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGL 400 (888)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 400 (888)
..+.|+++.|+..|++..+.+... ...++..+...|+.++|+..+++.. .|+...+.
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~---------------- 103 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSR---------------- 103 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHH----------------
Confidence 445566666666666654333221 2255555556666666666666554 22222221
Q ss_pred HHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 002718 401 QVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIM 477 (888)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 477 (888)
....+...|...|++++|.++|+++.+. +...+..++..+.+.++.++|++.+.++...
T Consensus 104 ----------------~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-- 165 (822)
T PRK14574 104 ----------------GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-- 165 (822)
T ss_pred ----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--
Confidence 1122233455555555565555555432 2333444455555566666666666665553
Q ss_pred CCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 002718 478 EPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRT 542 (888)
Q Consensus 478 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 542 (888)
.|+...+..++..+...++...|++.++++.+.. |.+...+..++..+.+.|-...|.++...-
T Consensus 166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 3444444333333333444444666666666654 445556666666666666666666665543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=2.9e-11 Score=125.74 Aligned_cols=439 Identities=13% Similarity=0.098 Sum_probs=288.7
Q ss_pred CCccHHHHHHHHHhCCChhHHHHHHHH----HHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCc--hhh
Q 002718 344 GLQSYNAIIVGYAQNGQGVEALQLFRL----LQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSN--ICV 417 (888)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 417 (888)
+...|-+-...=-.+|+.+....+..+ +...|+..+..-|..=..+|-..|..-.+..+...++..|+... ..+
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 334454444444555666555555443 45567777777776666667776777666666666666665432 245
Q ss_pred hHHHHHhhhccCChHHHHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 002718 418 ANSILDMYGKCQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQ 494 (888)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 494 (888)
+..-.+.|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... +
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~----------------- 580 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-C----------------- 580 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-C-----------------
Confidence 55555666666666666666655443 23445555554444555555555555555543 1
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHcCCChHHHHHHHH
Q 002718 495 QALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEER---DVVSWNAIISGFSGAKRSEDAHKFFS 571 (888)
Q Consensus 495 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 571 (888)
+.....+-....-+-..|++..|+.++...-+. +...|-+-+..-..+.++++|..+|.
T Consensus 581 ------------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 581 ------------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred ------------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 222223333333344445555555544444321 22344444555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCH
Q 002718 572 YMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDF 648 (888)
Q Consensus 572 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~ 648 (888)
+... ..|+...|.--+...--.++.++|.++++..++. ++.-...|..+.+.+-+.++++.|.+.|.... +..+
T Consensus 643 kar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i 719 (913)
T KOG0495|consen 643 KARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI 719 (913)
T ss_pred HHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence 5544 2444444444444444456666666666666554 22224456667777788888888888888776 3345
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVD 727 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 727 (888)
..|-.|...--+.|..-+|..+|++..-. .| |...|...+..=.+.|+.++|..+..+.+.+ ++.+...|..-|.
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIW 795 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHH
Confidence 67888888888889999999999998874 56 6678899999999999999999999888754 4455667888888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHH
Q 002718 728 ILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 728 ~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 807 (888)
+..+.++-..+.+.+++. +-|+.+.-+....+.....++.|..-|++++..+|++..++..+-..+...|.-++-.++
T Consensus 796 le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred hccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 888888877777777775 456677777777788888999999999999999999999999999999999999988999
Q ss_pred HHHHHhCCCccCCCeeEEEECC
Q 002718 808 RRLMRQNKVRKEPGCSWIGVND 829 (888)
Q Consensus 808 ~~~m~~~~~~~~~~~s~i~~~~ 829 (888)
+++.... .+.-|..|+.+.-
T Consensus 874 ~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 874 LKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHhcc--CCCCCcHHHHHhh
Confidence 8877653 3456777875543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=4.7e-13 Score=131.96 Aligned_cols=432 Identities=12% Similarity=0.087 Sum_probs=281.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhh--cCCChhHH-HHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhH
Q 002718 256 QNYKFIEALKLFKIMQKIGVGISQSTYASILRSCA--ALSNLKLG-TQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSD 332 (888)
Q Consensus 256 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 332 (888)
..|...++.-+|+.|++.|+..++..--.|++..+ ...+..-+ .+.|-.|.+.|-.... + -|.|.+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~-s--------WK~G~vAd 197 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS-S--------WKSGAVAD 197 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc-c--------cccccHHH
Confidence 45777888888888888888777776666655433 22222211 1223333333322111 1 23454433
Q ss_pred HHHHhccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCC
Q 002718 333 AQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLW 412 (888)
Q Consensus 333 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 412 (888)
-+| +...+...++.+||.|+++-...+.|.++|++-.....+.+..+|+.+|.+.+- ..++.+..+|+...+.
T Consensus 198 --L~~-E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 --LLF-ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred --HHH-hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 344 444456679999999999999999999999999999899999999999887653 3348889999999999
Q ss_pred CchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 002718 413 SNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACA 492 (888)
Q Consensus 413 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 492 (888)
||..++|+++....+.|+++.|.+. |++++.+|.+-|+.|...+|..+|..++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 9999999999999999988877654 5677889999999999999999999888
Q ss_pred ccCChhH-HHHHHHHHHH----hCCC----CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C---cccHHH
Q 002718 493 GQQALNY-GMQIHSRIIK----SGMG----SNLFVGSALIDMYCKCGMVEEAKKILKRTEER--------D---VVSWNA 552 (888)
Q Consensus 493 ~~~~~~~-a~~~~~~~~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~ 552 (888)
+.++..+ +..+..++.. ..+. .+...+..-++.+.+..+.+-|.++-.-.... + ..-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 8877744 4444444433 2232 24455666777777888888887776555421 1 123566
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCC
Q 002718 553 IISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGN 632 (888)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 632 (888)
+....++....+..+..|+.|.-.-+-|+..+...++++....+.++...+++..++..|........
T Consensus 404 ~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~------------ 471 (625)
T KOG4422|consen 404 FFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR------------ 471 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH------------
Confidence 77788888889999999999998888999999999999999999999999999999887754332221
Q ss_pred HHHHHHHHHhCC-CCCHHHHHHHHHHHHhC-CCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002718 633 VQDSRIMFEKSP-KRDFVTWNAMICGYAHH-GLGEEAL-KVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVM 709 (888)
Q Consensus 633 ~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 709 (888)
++.+.++-... .|+...-..+-...++. -++.++. .--.+|.+....| ...+..+..+.+.|..++|.++|...
T Consensus 472 -eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 472 -EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred -HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 11222222211 22211111111111110 1112221 2223444433333 33444445567888888888888887
Q ss_pred HhccCCCCChhHHHHH---HHHHhhcCCHHHHHHHHHhC
Q 002718 710 LSDYSLHPQLEHYSCM---VDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 710 ~~~~~~~p~~~~~~~l---~~~l~~~g~~~~A~~~~~~~ 745 (888)
.+.+.-.|.....++| ++.-.+......|...++-|
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6555444554444443 34444555555555555543
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=3.3e-12 Score=146.25 Aligned_cols=409 Identities=10% Similarity=0.046 Sum_probs=249.4
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCCCCccHHH-H--HHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhc
Q 002718 319 ATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNA-I--IVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAG 395 (888)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 395 (888)
.++..+...|+.++|+..+++...++...+.. + ...+...|++++|+++|+++.+.. |+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~---------------- 134 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PT---------------- 134 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------------
Confidence 66666777788888888888877654443333 3 346777899999999999998763 32
Q ss_pred hhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHh--CCChhHHHHHHHHHH
Q 002718 396 YLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQ--NGNEEETLFYFISML 473 (888)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 473 (888)
++.++..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.
T Consensus 135 ------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 135 ------------------NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred ------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 223344667777888888888888888877554433334444444 555656999999998
Q ss_pred HcCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHH
Q 002718 474 HAIMEPD-EFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNA 552 (888)
Q Consensus 474 ~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 552 (888)
+. .|+ ...+.....+..+.|-...|.++...- |+..+-...... +.+.|.+..+....++.
T Consensus 197 ~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----- 258 (822)
T PRK14574 197 RL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----- 258 (822)
T ss_pred Hh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhhcccccc-----
Confidence 86 454 556677778888888888877665542 221111110000 01111111111100000
Q ss_pred HHHHHHcCCC---hHHHHHHHHHHHH-CCCCCCH-H----HHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhh
Q 002718 553 IISGFSGAKR---SEDAHKFFSYMLK-MGVKPDD-F----TYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTL 623 (888)
Q Consensus 553 li~~~~~~g~---~~~A~~~~~~m~~-~g~~p~~-~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 623 (888)
....+ .+.|+.-++.+.. .+-.|.. . ...-.+-++...++..++++.++.+...+.+....+.-++
T Consensus 259 -----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 259 -----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred -----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 00011 1223333333332 1111211 1 1122333445555566666666666555544444455566
Q ss_pred ccchhhcCCHHHHHHHHHhCCC---------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CC--
Q 002718 624 VDMYSKCGNVQDSRIMFEKSPK---------RDFVTWNAMICGYAHHGLGEEALKVFENMELENV-----------KP-- 681 (888)
Q Consensus 624 i~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p-- 681 (888)
.++|...+++++|..+|+.+.. ++......|.-+|...+++++|..+++++.+.-- .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 6666666666666666665431 1233345677778888888888888888876211 12
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 002718 682 NHA-TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD-DVIWRTLL 758 (888)
Q Consensus 682 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 758 (888)
|-. .+..++..+.-.|+..+|++.++.+... -+-+......+.+++...|++.+|++.++.. ...|+ ..+.....
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 332 3445566778888999999999888743 2235667788888888899999999888766 45664 44666677
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchH
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
.+....|+++.|+...+++++..|+++..-
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 777788899999999999999999877544
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1.8e-11 Score=132.66 Aligned_cols=578 Identities=12% Similarity=0.096 Sum_probs=306.3
Q ss_pred CChhHHHHHHhcCCC---CCcchhhHHHHHHHhcCchhHHHHhhhhC---CCCCceehHHHHHHHhhCCChhhHHHHHHH
Q 002718 95 SNLKSALKVFDKMPQ---RDVVSWNALIFGYAVRGEMGIARTLFEAM---PERDVISWNSLLSGYLLVGDFSKAIDVFVE 168 (888)
Q Consensus 95 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 168 (888)
|++++|.+++.++.. .+...|-+|...|-..|+.+++...+-.. ...|...|-.+.....+.|.+.+|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 677777777766654 34446666777777777776666543332 123455666666666666777777777776
Q ss_pred HHhcCCCCCC-chHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHH----HHHhhhcCCChhhHHHHhcccCC--
Q 002718 169 MGRLSGMVDN-RSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSA----LVDMYAKCKKLDDSVSLFNRMSE-- 241 (888)
Q Consensus 169 m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~-- 241 (888)
..+. -+++ ...---...|-+.|+...|..-+.++....++.|..-.-. .+..|...++-+.|.+.++....
T Consensus 233 AI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 233 AIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 6652 3333 4444455556666777777766666666544222222222 24445556666777777766554
Q ss_pred C---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH----------------------H----HHHHHhhcC
Q 002718 242 R---NWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTY----------------------A----SILRSCAAL 292 (888)
Q Consensus 242 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~----~ll~~~~~~ 292 (888)
. +...++.++..|.+...++.|......+......+|..-+ . -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 2335777778888888888888777777663222222221 0 111122334
Q ss_pred CChhHHHHHHHHHHHhCC--CCchhHHhHHHHHhhcCCChhHHHHHhccCCCC----CCccHHHHHHHHHhCCChhHHHH
Q 002718 293 SNLKLGTQLHAHALKTDF--EMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNC----GLQSYNAIIVGYAQNGQGVEALQ 366 (888)
Q Consensus 293 ~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 366 (888)
...+....+...+.+..+ .-+...+.-+.++|...|++.+|.++|..+... +...|--+..+|...|.+++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 444444555555555552 334446666667777777777777777665432 33466666677777777777777
Q ss_pred HHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCCCe
Q 002718 367 LFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERRDA 446 (888)
Q Consensus 367 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 446 (888)
.|+..... .|+ +..+--+|...|-+.|+.++|.+.+..+..+|.
T Consensus 471 ~y~kvl~~--~p~----------------------------------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 471 FYEKVLIL--APD----------------------------------NLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHHHHHhc--CCC----------------------------------chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 77666554 222 222233555666677777777777777665541
Q ss_pred e-----eH-------HHHHHHHHhCCChhHHHHHHHHHHHcC----------------------CCCCcchHHHHHHHHh
Q 002718 447 V-----SW-------NAIIAVQAQNGNEEETLFYFISMLHAI----------------------MEPDEFTYGSVLKACA 492 (888)
Q Consensus 447 ~-----~~-------~~li~~~~~~g~~~~A~~~~~~m~~~g----------------------~~p~~~t~~~ll~~~~ 492 (888)
. .| -.....+.+.|+.++-+.+-..|+... ..-...+.-..+.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 1 11 122344556677666555555554321 1111222222222222
Q ss_pred ccCChhHHHHHH------HHHHHhCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc---------cHHHHHH
Q 002718 493 GQQALNYGMQIH------SRIIKSGMGSNL--FVGSALIDMYCKCGMVEEAKKILKRTEERDVV---------SWNAIIS 555 (888)
Q Consensus 493 ~~~~~~~a~~~~------~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~li~ 555 (888)
+.++.....+-. ......|+..+. ..+.-++..+++.+++++|..+...+....+. .-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 222211111111 011112222211 24556777888889999998887776643221 2234566
Q ss_pred HHHcCCChHHHHHHHHHHHHC-CC--CCCH-HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcC
Q 002718 556 GFSGAKRSEDAHKFFSYMLKM-GV--KPDD-FTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCG 631 (888)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~-g~--~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 631 (888)
+.+..+++..|...++.|... +. .|.. ..|+..++...+.++--.-.+....+.......++.....-......++
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNA 754 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhcc
Confidence 777888899998888888764 11 1221 2333334443333332222222222222222222333333334455677
Q ss_pred CHHHHHHHHHhCC--CCCHHHHHH-HHHHHH----------hCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 002718 632 NVQDSRIMFEKSP--KRDFVTWNA-MICGYA----------HHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIG 697 (888)
Q Consensus 632 ~~~~A~~~~~~~~--~~~~~~~~~-li~~~~----------~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 697 (888)
.+..|...+-... .||....+. |..++. +|-..-+++..+.+..+....- ....+..+.++|-+.|
T Consensus 755 s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~g 834 (895)
T KOG2076|consen 755 SFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIG 834 (895)
T ss_pred chHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcc
Confidence 7777766554433 233222222 111121 1222445556665555432111 3457777888888888
Q ss_pred CHHHHHHHHHHhH
Q 002718 698 LVEKGLHYFNVML 710 (888)
Q Consensus 698 ~~~~a~~~~~~m~ 710 (888)
.+.-|..+|++.+
T Consensus 835 l~~LA~~YYekvL 847 (895)
T KOG2076|consen 835 LVHLAVSYYEKVL 847 (895)
T ss_pred cHHHHHHHHHHHh
Confidence 8888888888877
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=3.4e-11 Score=130.64 Aligned_cols=609 Identities=12% Similarity=0.104 Sum_probs=349.6
Q ss_pred CCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhccc---CCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 002718 192 EDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRM---SERNWVSWNTVIAGCVQNYKFIEALKLFK 268 (888)
Q Consensus 192 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 268 (888)
|+++.|..++.++++..+ .....|..|...|-..|+.+++...+--. ...|...|-.+..-..+.|++.+|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 556666666655555432 34455666666666666666666554332 22445566666666666666777766666
Q ss_pred HHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHh----HHHHHhhcCCChhHHHHHhccCCC--
Q 002718 269 IMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGT----ATLDMYAKCNNMSDAQKVFNSLPN-- 342 (888)
Q Consensus 269 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~-- 342 (888)
+.++.. +++...+.-=...|-+.|+...|..-+.++.....+.|..-.- ..+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 666542 2222233333444556666666666666666554322222222 234455666666778777776543
Q ss_pred C---CCccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhH----------------------h----hHHHHhhhh
Q 002718 343 C---GLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITL----------------------S----GAFSACAVI 393 (888)
Q Consensus 343 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----------------------~----~ll~a~~~~ 393 (888)
. +...++.++..|.+...++.|......+......+|..-+ . .+.-++.+.
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2 3447888888888888888888888888763222222211 1 122233445
Q ss_pred hchhhHHHHHHHHHHhcCC--CchhhhHHHHHhhhccCChHHHHHHHhhcCCC----CeeeHHHHHHHHHhCCChhHHHH
Q 002718 394 AGYLEGLQVHGLAIKSNLW--SNICVANSILDMYGKCQDVIEACHVFDEMERR----DAVSWNAIIAVQAQNGNEEETLF 467 (888)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 467 (888)
...+....+.......... .++..|.-+.++|...|++.+|+.+|..+... +...|-.+...|...|..++|++
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 5556666666666666643 45567888889999999999999999888753 56688888899999999999999
Q ss_pred HHHHHHHcCCCCCc-chHHHHHHHHhccCChhHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 002718 468 YFISMLHAIMEPDE-FTYGSVLKACAGQQALNYGMQIHSRII--------KSGMGSNLFVGSALIDMYCKCGMVEEAKKI 538 (888)
Q Consensus 468 ~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 538 (888)
.|.+.+.. .|+. ..-.++-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|...|+.++=..+
T Consensus 471 ~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 471 FYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99988874 4543 344455556778888998888888743 233455556666667777778876653332
Q ss_pred HHhcCCC--------------------------CcccHHHHHHHHHcCCChHHHHH------HHHHHHHCCCCCCH--HH
Q 002718 539 LKRTEER--------------------------DVVSWNAIISGFSGAKRSEDAHK------FFSYMLKMGVKPDD--FT 584 (888)
Q Consensus 539 ~~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g~~p~~--~t 584 (888)
-..|..+ +....-.++.+-.+.++.....+ .+.--...|+..+. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 2222100 11111222222222222111111 11111112222222 13
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCC-CCCc----chhhhhccchhhcCCHHHHHHHHHhCCCC-----CH---HHH
Q 002718 585 YATLLDTCGNLATVGLGMQLHAQIIKQEM-QSDV----YISSTLVDMYSKCGNVQDSRIMFEKSPKR-----DF---VTW 651 (888)
Q Consensus 585 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~ 651 (888)
+.-++.++++.+.+++|..+...+..... ..+. ..-...+.+-...+++..|...+..+... ++ ..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44455566777777777777766665422 1111 12233444455667777777666665532 22 466
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHH-HHHHH
Q 002718 652 NAMICGYAHHGLGEEALKVFENMELENVKPNH--ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYS-CMVDI 728 (888)
Q Consensus 652 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~ 728 (888)
|...+...+.|+-.--.+++..... ..|+. ........-....+.+..|+..+-+.-. ..|+...++ ||+-+
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHH
Confidence 7666666666654444444444333 23322 2222223334456777777777766553 345533222 22222
Q ss_pred Hh----------hcCCHHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc---------
Q 002718 729 LG----------RSGQLNKALKLIQEMP-FE-A--DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS--------- 785 (888)
Q Consensus 729 l~----------~~g~~~~A~~~~~~~~-~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--------- 785 (888)
+. |.-.+-.+..++.+.. .. + -..+.-.++.+|..-|=+-.|...++++++..|.+.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~d 863 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYD 863 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCccc
Confidence 21 1112344555655441 11 1 334566688888888989999999999999865421
Q ss_pred ---chHHHHHHHHHHcCCchHHHHHHH
Q 002718 786 ---STYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 786 ---~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
.+-..|.-+|-..|+..-|.++.+
T Consensus 864 LrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 864 LRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 234567778888888888877654
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=1.1e-12 Score=140.84 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=63.1
Q ss_pred CCCceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHH
Q 002718 140 ERDVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSA 218 (888)
Q Consensus 140 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 218 (888)
.||.+||..+|.-||..|+.+.|- +|.-|+-. ..+.+ ..|+.++.+....++.+.++ .|...+|..
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 488888999999999999888888 88877765 55555 88888888888888877665 677788888
Q ss_pred HHHhhhcCCChhh
Q 002718 219 LVDMYAKCKKLDD 231 (888)
Q Consensus 219 li~~~~~~g~~~~ 231 (888)
|...|...|++..
T Consensus 89 Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHhccchHH
Confidence 8888888888654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=3.4e-10 Score=117.99 Aligned_cols=405 Identities=12% Similarity=0.051 Sum_probs=314.7
Q ss_pred hhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHH
Q 002718 391 AVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLF 467 (888)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 467 (888)
....+.+.|+-++..+++.- +.+ .-|.-+|.+..-++.|.++++...+ .+...|.+-...--.+|+.+....
T Consensus 387 VelE~~~darilL~rAvecc-p~s----~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQS----MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cch----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 33444444555555555431 112 2334455566667777777776654 367778777776677888887777
Q ss_pred HHHH----HHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002718 468 YFIS----MLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSN--LFVGSALIDMYCKCGMVEEAKKILKR 541 (888)
Q Consensus 468 ~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~ 541 (888)
+..+ +...|+..+...|..=..+|-+.|..-.+..+....+..|++.. ..+++.-.+.+.+.+.++-|..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7655 45678999999998888999999999999999999988887553 45778888889999999999999988
Q ss_pred cCC---CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcc
Q 002718 542 TEE---RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVY 618 (888)
Q Consensus 542 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 618 (888)
..+ .+...|...+..--.+|..++...+|++.... ++-....+....+..-..|++..|+.++..+...... +..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 765 35567888888878889999999999999886 2334455555666667789999999999999987654 677
Q ss_pred hhhhhccchhhcCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 002718 619 ISSTLVDMYSKCGNVQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAH 695 (888)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 695 (888)
++-+-+........++.|..+|.+.. .+....|.--+....-.+..++|++++++.++ ..|+- ..|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHH
Confidence 88888888999999999999998876 67778888888888888999999999999998 67876 578888899999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 002718 696 IGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP--FEADDVIWRTLLSICKIHGNVEVAEEA 773 (888)
Q Consensus 696 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 773 (888)
.++++.|...|..=.+ .++-.+..|-.|.++=.+.|.+..|..++++.. .+.|...|-..+..-.++|+.+.|+.+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999977552 233345578888888899999999999999873 445788999999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHcCCchHHHH
Q 002718 774 ASSLLQLDPQDSSTYILLSNIYADAGMWDKLSY 806 (888)
Q Consensus 774 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 806 (888)
.-++++..|.+...+.--.++.-+.++-.....
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 999999999776666655555555555444433
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=8.1e-15 Score=151.03 Aligned_cols=253 Identities=18% Similarity=0.199 Sum_probs=114.6
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCC
Q 002718 554 ISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLL-DTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGN 632 (888)
Q Consensus 554 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 632 (888)
...+.+.|++++|++++++.......|+...|-.++ ..+...++.+.|.+.++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 334445555555555554433332233333333322 2334456666666666666655432 44455566666 67888
Q ss_pred HHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002718 633 VQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGEEALKVFENMELENV-KPNHATFISVLRACAHIGLVEKGLHYFNVM 709 (888)
Q Consensus 633 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 709 (888)
+++|.++++... .++...+..++..+...|+++++.++++++....- .++...|..+...+.+.|+.++|+..+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877664 45667788888899999999999999999876432 336677888889999999999999999999
Q ss_pred HhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Q 002718 710 LSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEMP--FEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 710 ~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 786 (888)
.+ ..|+ ......++..+...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+.+|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 84 4564 6678889999999999999888887762 3567788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 787 TYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 787 ~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
....++.++...|+.++|.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998755
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=9.7e-12 Score=125.19 Aligned_cols=211 Identities=16% Similarity=0.137 Sum_probs=174.8
Q ss_pred cccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 002718 595 LATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVF 671 (888)
Q Consensus 595 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 671 (888)
.|+.-.+.+-++.+++....++. .|--+..+|....+.++-++.|.... +.|..+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777888888888886554332 25556667889999999999998766 556778888888888889999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 002718 672 ENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA 749 (888)
Q Consensus 672 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p 749 (888)
++.++ +.| +...|..+.-+..+.+.++++...|+..++++ +-.++.|+-....|..++++++|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999 889 55789999999999999999999999998765 345667888999999999999999999976 4555
Q ss_pred C---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 750 D---------DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 750 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
+ +.+-.+++-.- -.+|+..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|+.-
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4 44444444443 4489999999999999999999999999999999999999999999854
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=6.7e-11 Score=117.57 Aligned_cols=272 Identities=14% Similarity=0.145 Sum_probs=191.9
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcccHHH----H-HHHHHc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccH
Q 002718 525 MYCKCGMVEEAKKILKRTEERDVVSWNA----I-ISGFSG-AKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATV 598 (888)
Q Consensus 525 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l-i~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 598 (888)
-|.+.|+++.|.++++-..++|..+-++ | .--|.+ -.++..|.+.-+...... +-+......--......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 3667777777777776666554332221 1 111222 234555555554443321 22222222222223346778
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002718 599 GLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENME 675 (888)
Q Consensus 599 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 675 (888)
++|.+.+.+.+...-......|| +.-.+-+.|++++|++.|-++. ..+....-.+.+.|-...+..+|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 88888877776643322222333 3335677899999998886654 5667777788889999999999999998877
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 002718 676 LENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEADDVI 753 (888)
Q Consensus 676 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~ 753 (888)
. +-| |+....-|...|-+.|+-.+|.+++-.--. -.+-+.++..-|..-|....-+++|+.+|++. -++|+..-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 7 677 667788888999999999999887754321 23346778888888888899999999999998 48999999
Q ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCch
Q 002718 754 WRTLLSICK-IHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWD 802 (888)
Q Consensus 754 ~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 802 (888)
|..++..|. +.||+..|...++.+-...|.|...+..|..+....|..+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 999998765 5699999999999999999999999999999988888644
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=3e-12 Score=134.50 Aligned_cols=273 Identities=16% Similarity=0.110 Sum_probs=159.5
Q ss_pred CHHHHHHHHHhcCC--CCcc-cHHHHHHHHHcCCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHhcCcccHHHHHHHH
Q 002718 531 MVEEAKKILKRTEE--RDVV-SWNAIISGFSGAKRSEDAHKFFSYMLKMG-V-KPDDFTYATLLDTCGNLATVGLGMQLH 605 (888)
Q Consensus 531 ~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 605 (888)
+..+|...|..+++ .|+. ....+..+|...+++++|.++|+.+.+.. . .-+..+|.+.|-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45677777777553 2332 23445567777778888888887777642 1 12345666666543221 111112
Q ss_pred HHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 002718 606 AQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKR---DFVTWNAMICGYAHHGLGEEALKVFENMELENVKPN 682 (888)
Q Consensus 606 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 682 (888)
.+-+-.--+..+.+|.++.++|+-.++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..+. +.|+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11111112244566666666666666677776666666533 334555555556666666666666666655 5563
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 002718 683 H-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-EHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLL 758 (888)
Q Consensus 683 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 758 (888)
. .+|..+...|.+.++++.|.-.|+++. .+.|.- ....++...+.+.|+.|+|+.+++++ .++| |+..--.-.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3 466666666666667777766666665 455543 34455566666666666776666665 3444 343333344
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
..+...+++++|...+|++.++-|++...|.+++.+|.+.|+.+.|+.-+..+-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 444555666666666666666666666666667777766666666665555443
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.9e-11 Score=117.69 Aligned_cols=344 Identities=13% Similarity=0.169 Sum_probs=232.8
Q ss_pred HhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchH--HHHHHHHhccCChhHH
Q 002718 423 DMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTY--GSVLKACAGQQALNYG 500 (888)
Q Consensus 423 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a 500 (888)
-.+.+.|..+.|+..|.....+-+..|.+-+...--.-+.+.+ ..... |...|.... -.+..++......+++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888777765555555544332222222211 11111 122121111 1233445555566677
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKP 580 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 580 (888)
.+-...+...|++.+...-+....+.-...+++.|+.+|+++...|+.- --
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-----------------------------l~ 297 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-----------------------------LD 297 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-----------------------------ch
Confidence 7777777777777666666655555666666777777766665443210 01
Q ss_pred CHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCC---CCHHHHHHHHHH
Q 002718 581 DDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPK---RDFVTWNAMICG 657 (888)
Q Consensus 581 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 657 (888)
|..+|+.+|-.-.....+.- +.+-...--+--+.|...+.+-|+-.++.++|...|++..+ .-...|+.|..-
T Consensus 298 dmdlySN~LYv~~~~skLs~----LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHE 373 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSY----LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHE 373 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHH----HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHH
Confidence 22344443332221111111 11111110112345666777888888999999999998773 345789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCH
Q 002718 658 YAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQL 735 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~ 735 (888)
|..-.+...|++-+++.++ +.| |...|.+|.++|.-.++..-|+-+|++.. .++|+ ...|.+|++.|.+.++.
T Consensus 374 yvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccH
Confidence 9999999999999999999 888 78899999999999999999999999987 56674 56899999999999999
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------cCCCCcchHHHHHHHHHHcCCchHHHH
Q 002718 736 NKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQ-------LDPQDSSTYILLSNIYADAGMWDKLSY 806 (888)
Q Consensus 736 ~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~ 806 (888)
+||++-+.+. ..+.+...+..|...+.+-++.++|...+++.++ .+|.-..+..-|++-+.+.++|++|..
T Consensus 449 ~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 9999999987 2344668889999999999999999999999998 345555667779999999999999977
Q ss_pred HHH
Q 002718 807 TRR 809 (888)
Q Consensus 807 ~~~ 809 (888)
.-.
T Consensus 529 Ya~ 531 (559)
T KOG1155|consen 529 YAT 531 (559)
T ss_pred HHH
Confidence 544
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.9e-12 Score=133.61 Aligned_cols=276 Identities=16% Similarity=0.149 Sum_probs=137.2
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------CcccHHHHHHHHHcCCChHHHHHH
Q 002718 496 ALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEER------DVVSWNAIISGFSGAKRSEDAHKF 569 (888)
Q Consensus 496 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~ 569 (888)
+..+|...|..+-.. +..+..+...+..+|...+++++|+++|+.+... +...|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 344555555552222 2223344455555566666666666666555431 34445554443321 111221
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCH
Q 002718 570 F-SYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDF 648 (888)
Q Consensus 570 ~-~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 648 (888)
+ +++... -+-.+.||..+-..++-.++.+.|...|++.+.... ...+.|+.+..-+.....+|.|...|......|.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 1 122221 133345565555555556666666666555554321 1345555555555555556666666655554444
Q ss_pred HH---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHH
Q 002718 649 VT---WNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYS 723 (888)
Q Consensus 649 ~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 723 (888)
.. |-.|.-.|.+.++++.|+-.|++..+ +.| |.+....+...+.+.|+.|+|+.+++++. -+.|. +..--
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHH
Confidence 33 33344455566666666666665555 555 44455555555555666666666666554 22222 11222
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 724 CMVDILGRSGQLNKALKLIQEMP-FEAD-DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 724 ~l~~~l~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
..+..+...++.+||+..++++. +-|+ ..++-.++..|++.|+.+.|+.-+--+.+++|.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 33444555556666666665552 3333 334444445566666666666666666666553
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=8.3e-11 Score=116.90 Aligned_cols=268 Identities=15% Similarity=0.154 Sum_probs=138.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCcchHHH--HHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 002718 456 QAQNGNEEETLFYFISMLHAIMEPDEFTYGS--VLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVE 533 (888)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 533 (888)
|.++|+++.|+++++-+.+..-+.-...-+. ++.-.....++..|.++-+..+... .-+....+.-.+.-...|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence 4455666666666655544322221111111 1222222334555555544443322 112222211122233456777
Q ss_pred HHHHHHHhcCCCCcccHHHHHH---HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 002718 534 EAKKILKRTEERDVVSWNAIIS---GFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIK 610 (888)
Q Consensus 534 ~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 610 (888)
.|.+.+++....|...-.+|.+ .+-..|+.++|++.|-++... +..+...+..+.+.
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qiani------------------- 567 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANI------------------- 567 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHH-------------------
Confidence 7777777766665544333332 345566777777776655431 12223333333333
Q ss_pred hCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 002718 611 QEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATF 686 (888)
Q Consensus 611 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~ 686 (888)
|-...+...|++++.+.. +.|+.....|...|-+.|+-.+|.+.+-+--+ +.| |..|.
T Consensus 568 ----------------ye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~i 629 (840)
T KOG2003|consen 568 ----------------YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETI 629 (840)
T ss_pred ----------------HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHH
Confidence 444444444544444322 44555566666666666666666665544333 445 55666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHH-HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 002718 687 ISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDI-LGRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKI 763 (888)
Q Consensus 687 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-l~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~ 763 (888)
..|..-|....-+++++.+|++.. -+.|+..-|..|+.. +.|.|++.+|.++++.. .++.|..++..|+..|..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 666666666666667777776654 456666666655543 34566777777776666 355666666666666654
Q ss_pred hC
Q 002718 764 HG 765 (888)
Q Consensus 764 ~g 765 (888)
.|
T Consensus 707 lg 708 (840)
T KOG2003|consen 707 LG 708 (840)
T ss_pred cc
Confidence 44
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4e-10 Score=113.10 Aligned_cols=252 Identities=12% Similarity=0.126 Sum_probs=198.7
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCC--CCcchhhhhccchhhcC
Q 002718 554 ISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQ--SDVYISSTLVDMYSKCG 631 (888)
Q Consensus 554 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 631 (888)
..++....+.++++.-.......|+..+...-+....+.-...+++.|+.+|+.+.+..+- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3455555677888888888888886666555444445556778999999999999987431 3566665554 33333
Q ss_pred CHHH---HHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 002718 632 NVQD---SRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFN 707 (888)
Q Consensus 632 ~~~~---A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 707 (888)
+-.- |..++ .+.+--+.|..++.+-|...++.++|+..|++..+ +.|.. ..|+.+..-|....+...|++-++
T Consensus 312 ~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221 22222 22233345666677888889999999999999999 78855 678888889999999999999999
Q ss_pred HhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002718 708 VMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQD 784 (888)
Q Consensus 708 ~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 784 (888)
+++ .+.| |-..|-.|+.+|.-.+.+.=|+=+|++. .++| |+.+|.+|+..|-+-++.++|++.+.+++.....+
T Consensus 389 rAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 998 4556 4558999999999999999999999998 5777 78899999999999999999999999999999889
Q ss_pred cchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 785 SSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 785 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
..+|+.|+++|.+.++.++|...+++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999998875543
No 43
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.7e-08 Score=108.74 Aligned_cols=640 Identities=9% Similarity=0.098 Sum_probs=336.7
Q ss_pred HHHHHHHhcCChhHHHHHHhcCCC-CCcchhhHHHHHHHhcCchhHHHHhhhhCCC--CCceehHHHHHHHhhCCChhhH
Q 002718 86 CLIQLYIKCSNLKSALKVFDKMPQ-RDVVSWNALIFGYAVRGEMGIARTLFEAMPE--RDVISWNSLLSGYLLVGDFSKA 162 (888)
Q Consensus 86 ~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 162 (888)
..+.+|+.+|.++.+.-...+.-- || |-.+|..+.+ -.++.+.++...|++ +...-.+.+...+......+.+
T Consensus 486 KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~ 561 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQC 561 (1666)
T ss_pred HHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhh
Confidence 344455555555544443333321 22 4445565555 567777777777764 4455677777777777777777
Q ss_pred HHHHHHHHhcCCCCCC-chHHH-HHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccC
Q 002718 163 IDVFVEMGRLSGMVDN-RSFAV-ALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMS 240 (888)
Q Consensus 163 ~~~~~~m~~~~~~~~~-~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (888)
..++-...+ +..|+ ..+.. ++.. .-.+ |-++.+.++..+. ....-+..+.+.+.+.|-+..|++.+..+.
T Consensus 562 TSFLLdaLK--~~~Pd~g~LQTrLLE~-NL~~----aPqVADAILgN~m-FtHyDra~IAqLCEKAGL~qraLehytDl~ 633 (1666)
T KOG0985|consen 562 TSFLLDALK--LNSPDEGHLQTRLLEM-NLVH----APQVADAILGNDM-FTHYDRAEIAQLCEKAGLLQRALEHYTDLY 633 (1666)
T ss_pred HHHHHHHhc--CCChhhhhHHHHHHHH-Hhcc----chHHHHHHHhccc-cccccHHHHHHHHHhcchHHHHHHhcccHH
Confidence 777776665 44555 22222 2211 1111 2233333333332 122236677888899999999999988876
Q ss_pred C--CChhHHHH-----HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHh-----
Q 002718 241 E--RNWVSWNT-----VIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKT----- 308 (888)
Q Consensus 241 ~--~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----- 308 (888)
. +.++ .+. -+..|.-.-.++++++.++.|...+++.|..+...+..-+...-..+...++|+.....
T Consensus 634 DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~y 712 (1666)
T KOG0985|consen 634 DIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYY 712 (1666)
T ss_pred HHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHH
Confidence 4 2222 122 13456666788999999999999999888887776666665554455555555544321
Q ss_pred ------CCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCC------------------------cc-HHHHHHHHHh
Q 002718 309 ------DFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGL------------------------QS-YNAIIVGYAQ 357 (888)
Q Consensus 309 ------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------------~~-~~~li~~~~~ 357 (888)
++..|+.+.-..|.+.|+.|++.+.+++.++-.--|. .. -+-|+. |.-
T Consensus 713 fLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl-YLy 791 (1666)
T KOG0985|consen 713 FLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL-YLY 791 (1666)
T ss_pred HHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH-HHH
Confidence 3456777777889999999999999888765321110 01 112222 222
Q ss_pred CCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhh--------------------------hhhchhhHHHHHHHHHHhcC
Q 002718 358 NGQGVEALQLFRLLQKSGLGFNEITLSGAFSACA--------------------------VIAGYLEGLQVHGLAIKSNL 411 (888)
Q Consensus 358 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--------------------------~~~~~~~a~~~~~~~~~~~~ 411 (888)
.++..+-+++|-+-...+-.| .....+++.=| +.+++..-...++..+..|.
T Consensus 792 rnn~~kyIE~yVQkvNps~~p--~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 792 RNNLQKYIEIYVQKVNPSRTP--QVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HhhHHHHHHHHHhhcCCcccc--hhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 223333334433322221111 11111111100 11111111111222222221
Q ss_pred CCchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 002718 412 WSNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKAC 491 (888)
Q Consensus 412 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 491 (888)
-|+.++|+|...|...++-.+- . .+.|..-=+..+.-||...++.-|.-.+++-. -|. -+|..|
T Consensus 870 -~d~a~hnAlaKIyIDSNNnPE~--f----LkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq-----cD~----elI~vc 933 (1666)
T KOG0985|consen 870 -QDPATHNALAKIYIDSNNNPER--F----LKENPYYDSKVVGKYCEKRDPHLACVAYERGQ-----CDL----ELINVC 933 (1666)
T ss_pred -cchHHHhhhhheeecCCCChHH--h----cccCCcchhhHHhhhhcccCCceEEEeecccC-----CcH----HHHHhc
Confidence 1333333333333333221110 0 00111111122223333333222222211100 000 011111
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH-----------HHhcC------CCCcccHHHHH
Q 002718 492 AGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKI-----------LKRTE------ERDVVSWNAII 554 (888)
Q Consensus 492 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-----------~~~~~------~~~~~~~~~li 554 (888)
.. -..|..+...+.+..+.+-=.++ .++.. ..|+..-+..+
T Consensus 934 Ne----------------------NSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tV 991 (1666)
T KOG0985|consen 934 NE----------------------NSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTV 991 (1666)
T ss_pred Cc----------------------hhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHH
Confidence 11 11112222222222222111111 11111 12333344445
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------------------HHHHhcCcccHHHHHHHH
Q 002718 555 SGFSGAKRSEDAHKFFSYMLKMGVKPD-DFTYAT----------------------------LLDTCGNLATVGLGMQLH 605 (888)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~----------------------------ll~a~~~~~~~~~a~~~~ 605 (888)
.++...+-+.+-+++++++.-..-.-+ ....-. +...+...+-+++|..+|
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~if 1071 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIF 1071 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHH
Confidence 555555555555555555543211000 001111 111222333344444444
Q ss_pred HHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHH
Q 002718 606 AQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHA 684 (888)
Q Consensus 606 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 684 (888)
+.. ..+....+.|++ ..+.++.|.+.-++... ...|..+..+-.+.|...+|++-|- +. |+.
T Consensus 1072 kkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyi-------kadDps 1134 (1666)
T KOG0985|consen 1072 KKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYI-------KADDPS 1134 (1666)
T ss_pred HHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHH-------hcCCcH
Confidence 432 112222222322 34555666665555543 3579999999999999999998873 33 667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIH 764 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 764 (888)
.|.-++.++++.|.+++-..++....++ .-.|..+ +.|+-+|++.+++.|-++++. .||..-.....+-|...
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhh
Confidence 8999999999999999999999776644 5566665 678999999999999988886 58888889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 765 GNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 765 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
|.++.|+-++..+ +.|..|+..+...|.+..|...-++.
T Consensus 1208 ~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999998887654 56778888888888888876654433
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.40 E-value=1e-10 Score=126.22 Aligned_cols=254 Identities=11% Similarity=-0.016 Sum_probs=146.3
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCchhHH--HHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHcCCChHH
Q 002718 491 CAGQQALNYGMQIHSRIIKSGMGSNLFVG--SALIDMYCKCGMVEEAKKILKRTEER---DVVSWNAIISGFSGAKRSED 565 (888)
Q Consensus 491 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 565 (888)
....|+++.+...+.++.+. .|+.... ......+...|+++.|...++...+. +......+...|.+.|++++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 35556666666666665543 2332222 23355666677777777777666532 34456666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC
Q 002718 566 AHKFFSYMLKMGVKPDDFTYATLL-DTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP 644 (888)
Q Consensus 566 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 644 (888)
|.+++..+.+.+..++. .+..+- .+ +..++.......+.+...++++...
T Consensus 206 a~~~l~~l~k~~~~~~~-~~~~l~~~a----------------------------~~~l~~~~~~~~~~~~l~~~w~~lp 256 (398)
T PRK10747 206 LLDILPSMAKAHVGDEE-HRAMLEQQA----------------------------WIGLMDQAMADQGSEGLKRWWKNQS 256 (398)
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHH----------------------------HHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 77777777776543222 111000 00 0000000111112333344444443
Q ss_pred ---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhH
Q 002718 645 ---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEH 721 (888)
Q Consensus 645 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 721 (888)
+.++.....+...+...|+.++|.+++++..+ ..||.... ++.+....++.+++++..+...+.++ -+...
T Consensus 257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P--~~~~l 330 (398)
T PRK10747 257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG--DTPLL 330 (398)
T ss_pred HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC--CCHHH
Confidence 34566666777777777777777777777766 34444211 22233344777777777777765432 23345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLD 781 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 781 (888)
+.++..++.+.|++++|.+.++++ ...|+...+..+..++...|+.+.|...+++.+.+-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 667777777777777777777766 566777777777777777777777777777776653
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.37 E-value=6.2e-10 Score=120.88 Aligned_cols=288 Identities=10% Similarity=0.008 Sum_probs=140.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCcch-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 002718 458 QNGNEEETLFYFISMLHAIMEPDEFT-YGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAK 536 (888)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 536 (888)
..|+++.|.+.+.+..+. .|++.. +.....+....|+.+.+.+.+....+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 567788888777766553 344332 23334445666777777777777655432222233334456666667777666
Q ss_pred HHHHhcCCC---CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcCcccHHHHHHHHHHHHHhC
Q 002718 537 KILKRTEER---DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLL-DTCGNLATVGLGMQLHAQIIKQE 612 (888)
Q Consensus 537 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~~ 612 (888)
..++.+.+. +...+..+...+.+.|++++|.+++..+.+.+..+. ..+..+- .+. .
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~-------------~------ 233 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAE-------------I------ 233 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHH-------------H------
Confidence 666666532 344555666666666666666666666666543221 1111110 000 0
Q ss_pred CCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 002718 613 MQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATF--- 686 (888)
Q Consensus 613 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 686 (888)
.+++.-......+...+.++... +.+...+..++..+...|+.++|.+++++..+ ..||....
T Consensus 234 ---------~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 234 ---------GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred ---------HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 00000000111222233333333 23566666666677777777777777777666 34544311
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHH
Q 002718 687 ISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQE--M-PFEADDVIWRTLLSICKI 763 (888)
Q Consensus 687 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~ 763 (888)
..........++.+.+.+.+++..+..+..|+.....++..++.+.|++++|.+.++. . ...|++..+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111112223455555555555543333333222334444555555555555555542 1 234444444444444444
Q ss_pred hCCHHHHHHHHHHHH
Q 002718 764 HGNVEVAEEAASSLL 778 (888)
Q Consensus 764 ~g~~~~a~~~~~~~~ 778 (888)
.|+.+.|..++++.+
T Consensus 383 ~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 383 AGDKAEAAAMRQDSL 397 (409)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555544444443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=1.9e-10 Score=124.13 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=159.6
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHH
Q 002718 558 SGAKRSEDAHKFFSYMLKMGVKPDDFTYA--TLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQD 635 (888)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 635 (888)
.+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|...++.+.+... .++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHH
Confidence 4455555555555555442 33332221 112334445555555555555544432 234444555555555566666
Q ss_pred HHHHHHhCCCC---CH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002718 636 SRIMFEKSPKR---DF--------VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLH 704 (888)
Q Consensus 636 A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 704 (888)
|.+++..+.+. +. ..|..++.......+.+...++++.+-+. .+.+......+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 65555544411 11 13334444444455566777777776442 33467788899999999999999999
Q ss_pred HHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 705 YFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 705 ~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
.+++..+ ..|+.... ++......|+.+++.+.+++. .-.| |+..+.++...|...|+++.|+..++++++..|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999884 24444322 233334569999999999887 4445 566788889999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 783 QDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
+ ...+..|+.++.+.|+.++|.++++.-
T Consensus 360 ~-~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 360 D-AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 566889999999999999999998854
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=2.5e-07 Score=97.10 Aligned_cols=444 Identities=14% Similarity=0.136 Sum_probs=244.8
Q ss_pred hhHHHHHHhhhcCCChhhHHHHhcccCC-----CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 002718 214 VTGSALVDMYAKCKKLDDSVSLFNRMSE-----RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRS 288 (888)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 288 (888)
..|-.-+....+.|++...++.|++... .....|...+......+-++-++.++++..+. ++..-.--|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 4555566667788888888888887543 22345777788777888888899999888763 33345666777
Q ss_pred hhcCCChhHHHHHHHHHHHhC------CCCchhHHhHHHHHhhcCCCh---hHHHHHhccCCCC--C--CccHHHHHHHH
Q 002718 289 CAALSNLKLGTQLHAHALKTD------FEMDVIVGTATLDMYAKCNNM---SDAQKVFNSLPNC--G--LQSYNAIIVGY 355 (888)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~--~--~~~~~~li~~~ 355 (888)
++..+++++|.+.++.++... .+.+...+..+-+..++.-+. -...+++..+..+ | ...|++|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 778888888888887775332 245555666666655554322 1223344443322 2 23699999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHH
Q 002718 356 AQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEAC 435 (888)
Q Consensus 356 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 435 (888)
.+.|.++.|.++|++.... .....-|+.+.++++.......+..+- .....+..+. ..-+++-.+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~~ 323 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELHM 323 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHHH
Confidence 9999999999999987765 334455666777776654433322222 1111111100 001122233
Q ss_pred HHHhhcCCC---------------CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHH
Q 002718 436 HVFDEMERR---------------DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYG 500 (888)
Q Consensus 436 ~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 500 (888)
.-|+.+.++ ++..|..-.. +..|+..+-+..|.+.++. +.|-...
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~----------------- 383 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAV----------------- 383 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCC-----------------
Confidence 333333322 2223332222 2345555555555555543 2222110
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc-------cHHHHHHHHHcCCChHHHHHHHHHH
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVV-------SWNAIISGFSGAKRSEDAHKFFSYM 573 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m 573 (888)
..-...|..+.+.|-..|+++.|+.+|++...-+-. +|-.....=.++.+++.|+++.++.
T Consensus 384 ------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 384 ------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred ------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 001123444444555555555555555544432211 1222222223344444454444443
Q ss_pred HHCCC-----------------CCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHH
Q 002718 574 LKMGV-----------------KPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDS 636 (888)
Q Consensus 574 ~~~g~-----------------~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 636 (888)
....- .-+...|...++.--..|-++..+.+++.++...+.. +.+.-...-.+-....++++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaT-Pqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHH
Confidence 22110 0112234445555556677888888888888876532 22222222234456678889
Q ss_pred HHHHHhCC----CCCH-HHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHH
Q 002718 637 RIMFEKSP----KRDF-VTWNAMICGYAHH---GLGEEALKVFENMELENVKPNHATFISVL--RACAHIGLVEKGLHYF 706 (888)
Q Consensus 637 ~~~~~~~~----~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~ 706 (888)
.+++++.. -|++ ..|+..+.-+.+. -..+.|..+|++..+ |.+|...-+.-|+ ..=..-|....|++++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99998876 3555 3777766555432 348899999999988 6777554332232 2233458888888888
Q ss_pred HHhH
Q 002718 707 NVML 710 (888)
Q Consensus 707 ~~m~ 710 (888)
++..
T Consensus 610 erat 613 (835)
T KOG2047|consen 610 ERAT 613 (835)
T ss_pred HHHH
Confidence 8764
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=4.6e-07 Score=95.14 Aligned_cols=306 Identities=17% Similarity=0.200 Sum_probs=153.0
Q ss_pred hhHHHHHhhhccCChHHHHHHHhhcCCCCee-------eHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHH
Q 002718 417 VANSILDMYGKCQDVIEACHVFDEMERRDAV-------SWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLK 489 (888)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 489 (888)
.|..+.+.|-..|+++.|+.+|++...-+-. .|..-...-.+..+++.|+.+.+.... .|.... +.
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~ 461 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LE 461 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hh
Confidence 4567777788888888888888776654322 233333334455666667666555543 233221 11
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHH---HHHcCCChHHH
Q 002718 490 ACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIIS---GFSGAKRSEDA 566 (888)
Q Consensus 490 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A 566 (888)
+...+..-++ .+ -.+..+|...++.--..|-++....+++++.+--+.|=..+++ .+-.+.-++++
T Consensus 462 -~yd~~~pvQ~-rl---------hrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 462 -YYDNSEPVQA-RL---------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES 530 (835)
T ss_pred -hhcCCCcHHH-HH---------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence 1111111000 01 1233455566666666777777777777776543333332222 12334456677
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHh
Q 002718 567 HKFFSYMLKMGVKPDD-FTYATLLDTCG---NLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEK 642 (888)
Q Consensus 567 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 642 (888)
.+.+++-+..=-.|+. ..|++.|.-+. ....++.|+.+|++.++ |.+|.- ...+--.|+
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~--aKtiyLlYA-------------- 593 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH--AKTIYLLYA-------------- 593 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH--HHHHHHHHH--------------
Confidence 7776654443223443 23444443322 22356677777777766 433221 111111111
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 002718 643 SPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH--ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE 720 (888)
Q Consensus 643 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 720 (888)
..--.+|-...|+.++++.... ++|.. ..|+..|.--...=-+.....+|++.++. -|+..
T Consensus 594 -------------~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~ 656 (835)
T KOG2047|consen 594 -------------KLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSK 656 (835)
T ss_pred -------------HHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHH
Confidence 1112335555666666664432 44422 24555544222222233344455555522 23322
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHHhCCHHHHHHHH
Q 002718 721 ---HYSCMVDILGRSGQLNKALKLIQEMP--FEA--DDVIWRTLLSICKIHGNVEVAEEAA 774 (888)
Q Consensus 721 ---~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p--~~~~~~~ll~~~~~~g~~~~a~~~~ 774 (888)
..--..++=.+.|.++.|..++.-.. .+| +...|.+.-..-.+|||-+.-+.++
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 12223455567788888888877552 344 6677888888888888844444333
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.34 E-value=3.1e-12 Score=131.80 Aligned_cols=252 Identities=14% Similarity=0.198 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CC----CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCc
Q 002718 521 ALIDMYCKCGMVEEAKKILKRT-EE----RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNL 595 (888)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 595 (888)
.+...+.+.|++++|.++++.. .. .|...|..+.......+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455566667777777777432 21 24445555555666677777777777777665422 33445455544 566
Q ss_pred ccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 002718 596 ATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP-----KRDFVTWNAMICGYAHHGLGEEALKV 670 (888)
Q Consensus 596 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 670 (888)
+++++|.++.....+.. +++..+...+..|.+.++++++.++++... +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766555432 445556667777888888888888777633 45677888889999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 002718 671 FENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFE 748 (888)
Q Consensus 671 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~ 748 (888)
+++..+ ..|+ ......++..+...|+.+++.++++...+.. ..+...+..+..++...|+.++|+..+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999 6884 5678888999999999999988888887543 445556788899999999999999999987 334
Q ss_pred C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 749 A-DDVIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 749 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
| |+.+...+..++...|+.+.|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 4 7888888889999999999999999888754
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.6e-10 Score=116.31 Aligned_cols=195 Identities=15% Similarity=0.116 Sum_probs=164.5
Q ss_pred cchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002718 617 VYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRA 692 (888)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 692 (888)
...+..+...|...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++..+. .| +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 4556677788888999999999888765 445678888999999999999999999999884 45 55778888899
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHH
Q 002718 693 CAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVA 770 (888)
Q Consensus 693 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 770 (888)
+...|++++|.+.++++............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999854222234456778899999999999999999887 3344 566888888899999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 771 EEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 771 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999998999999999999999999999998887754
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=3.4e-10 Score=122.95 Aligned_cols=281 Identities=9% Similarity=0.007 Sum_probs=183.6
Q ss_pred hccCChHHHHHHHhhcCCC--Ce-eeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcc--hHHHHHHHHhccCChhHH
Q 002718 426 GKCQDVIEACHVFDEMERR--DA-VSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEF--TYGSVLKACAGQQALNYG 500 (888)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a 500 (888)
...|+++.|.+.+....+. +. ..+-.......+.|+++.|.+.|.+..+. .|+.. .-......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHH
Confidence 5679999999999887653 22 22334456777889999999999998774 35553 333457778889999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc---cHHHH----HHHHHcCCChHHHHHHHHHH
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVV---SWNAI----ISGFSGAKRSEDAHKFFSYM 573 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l----i~~~~~~g~~~~A~~~~~~m 573 (888)
...++.+.+.. |.++.+...+...|...|++++|.+.+..+.+..+. .+..+ ..+....+..++..+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999987 667788999999999999999999999988754322 12111 11112222222222233333
Q ss_pred HHCCC---CCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHH
Q 002718 574 LKMGV---KPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVT 650 (888)
Q Consensus 574 ~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 650 (888)
.+... +.+...+..+...+...|+.+.|.+++....+.. ||...
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---------------------------------pd~~~ 298 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---------------------------------GDDRA 298 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---------------------------------CCccc
Confidence 33210 1133344444444444444444444444444432 22110
Q ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHH
Q 002718 651 ---WNAMICGYAHHGLGEEALKVFENMELENVKPNH---ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSC 724 (888)
Q Consensus 651 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 724 (888)
+..........++.+.+++.+++..+ ..|+. ....++...|.+.|++++|.++|+... .....|+.+.+..
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~-a~~~~p~~~~~~~ 375 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVA-ACKEQLDANDLAM 375 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhH-HhhcCCCHHHHHH
Confidence 11111223334677788888888777 56744 445688888999999999999998533 2255788888889
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 002718 725 MVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 725 l~~~l~~~g~~~~A~~~~~~~ 745 (888)
+..++.+.|+.++|.+++++.
T Consensus 376 La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999888863
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.2e-09 Score=109.59 Aligned_cols=248 Identities=16% Similarity=0.086 Sum_probs=167.9
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHH
Q 002718 557 FSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDS 636 (888)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 636 (888)
+...+++.+..+++....+.. ++....+..-|..+...|+..+-..+-..+.+. .+..+.+|-++.-.|.-.|+..+|
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 344445555555555544431 223333333333444444444333333333332 234456667777777777888888
Q ss_pred HHHHHhCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 002718 637 RIMFEKSPKR---DFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSD 712 (888)
Q Consensus 637 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 712 (888)
++.|.+...- -...|-.....|+-.|..++|+..+...-+ .-| ....+.-+..-|.+.++.+.|.++|.+..
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~-- 407 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL-- 407 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHHH--
Confidence 8888876532 236888888888888999999988888776 444 44455566667888889999999998877
Q ss_pred cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 713 YSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEMP-----FEA----DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 713 ~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
++-|+ +..++-+.-.....+.+.+|..+|+..- ..+ =..+|+.|+.+|++.+.++.|+..+++++.+.|
T Consensus 408 -ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 -AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred -hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 55554 3345556656667788888888887651 111 234578888889999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 783 QDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
.++.+|..+|-+|...|+.+.|...+.+-
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999998877644
No 53
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=8.9e-08 Score=96.67 Aligned_cols=393 Identities=11% Similarity=0.093 Sum_probs=247.9
Q ss_pred CCchhhhHHHHHhhhccCChHHHHHHHhhcC--CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcc----hHH
Q 002718 412 WSNICVANSILDMYGKCQDVIEACHVFDEME--RRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEF----TYG 485 (888)
Q Consensus 412 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 485 (888)
.|+...|.+.|+.=.+-+.++.|..++++.. .|++.+|-.-..---++|+...|..+|....+. -.|.. .+.
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 4444445555555555555555555555432 345555555444445555555555555554442 11222 222
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---CcccHHH
Q 002718 486 SVLKACAGQQALNYGMQIHSRIIKSGMGSN--LFVGSALIDMYCKCGMVEEAKKI--------LKRTEER---DVVSWNA 552 (888)
Q Consensus 486 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~~~~~---~~~~~~~ 552 (888)
++..--.+...++.|..++...+..- +.+ ...|..+...--+-|+.....+. ++.+.+. |-.+|--
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 22222234556677777777766552 222 33444444444444553333222 2222233 4456777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-------HH---HHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhh
Q 002718 553 IISGFSGAKRSEDAHKFFSYMLKMGVKPDDF-------TY---ATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISST 622 (888)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~---~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 622 (888)
.+..--..|+.+...++|.+.+.. ++|-.. .| +-.+-.-....+.+.+.++++..++. ++....++.-
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaK 405 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAK 405 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHH
Confidence 777777889999999999999875 455321 11 11222224567899999999998883 3344555555
Q ss_pred hccchh----hcCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 002718 623 LVDMYS----KCGNVQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAH 695 (888)
Q Consensus 623 li~~~~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 695 (888)
+--+|+ ++.++..|.+++.... .|..-++...|..-.+.+.++....++++.++ ..| |..+|......=..
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~ 483 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETS 483 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHH
Confidence 554554 6889999999998766 57777888888888999999999999999999 788 67889888888888
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HhC----
Q 002718 696 IGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSICK-----IHG---- 765 (888)
Q Consensus 696 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g---- 765 (888)
.|+.|.|..+|+..++...+.-....|...|+.=...|.++.|..+++++ ...+...+|-++...-. ..+
T Consensus 484 LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~ 563 (677)
T KOG1915|consen 484 LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLA 563 (677)
T ss_pred hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchh
Confidence 99999999999999866443333446788888888999999999999987 34445558887765433 234
Q ss_pred -------CHHHHHHHHHHHHhc----CCCCcchHH--HHHHHHHHcCCchHHHHHHHHH
Q 002718 766 -------NVEVAEEAASSLLQL----DPQDSSTYI--LLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 766 -------~~~~a~~~~~~~~~~----~p~~~~~~~--~l~~~~~~~g~~~~a~~~~~~m 811 (888)
++..|..+|+++... +|+...... ..-+.=...|.-.+...+-+.|
T Consensus 564 ~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 564 ELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 677888899888764 343222222 2233334456666666665555
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.28 E-value=1.2e-08 Score=102.70 Aligned_cols=418 Identities=13% Similarity=0.144 Sum_probs=287.7
Q ss_pred cCChHHHHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 002718 428 CQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIH 504 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 504 (888)
.+++..|..+|++... +++..|-.-+..-.++..+..|..+++..+..-...|. .|-..+..--..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHH
Confidence 4556677777776654 45667777777777778888888888777764222222 2233334445578888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC--CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH
Q 002718 505 SRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTE--ERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDD 582 (888)
Q Consensus 505 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 582 (888)
+.-.+. .|+...+.+.|+.-.+-..++.|..++++.. .|++.+|-....-=.++|+...|..+|....+. -.|.
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 877665 6888888888888888888888888888754 577778877777777888888888888877653 2233
Q ss_pred HHHHHHHHHh----cCcccHHHHHHHHHHHHHhCCCCC-cchhhhhccchhhcCC---HHHHHHH-----HHhCC---CC
Q 002718 583 FTYATLLDTC----GNLATVGLGMQLHAQIIKQEMQSD-VYISSTLVDMYSKCGN---VQDSRIM-----FEKSP---KR 646 (888)
Q Consensus 583 ~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~~-----~~~~~---~~ 646 (888)
..-..+..++ .....++.|.-++...+..-.... ...|..+...--+-|+ ++++.-- ++... +-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 3333333333 345677888888888877533221 2333333333223333 4444221 22222 34
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-H------HHHHHHHHH---HhcCCHHHHHHHHHHhHhccCCC
Q 002718 647 DFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-A------TFISVLRAC---AHIGLVEKGLHYFNVMLSDYSLH 716 (888)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~ 716 (888)
|-.+|--.+..--..|+.+...++|++.+.. ++|-. . .|.-+=-+| ....+++.+.++|+..++ +-
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lI 396 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LI 396 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hc
Confidence 6678888888888889999999999999875 66622 1 222222233 356889999999999883 55
Q ss_pred CChh-HHHHH----HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHH
Q 002718 717 PQLE-HYSCM----VDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYIL 790 (888)
Q Consensus 717 p~~~-~~~~l----~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 790 (888)
|... +++-+ .....|+-++..|.+++..+ +.-|-.-++...+..-.+.++++....++++.++-.|.+-.++..
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 6533 44433 33345888999999999876 788999999999998888899999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHH
Q 002718 791 LSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEM 858 (888)
Q Consensus 791 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~ 858 (888)
.+..=-..|++|-|..+++...+......|..-|- .--.|-.....+.++..+|+.|-+..+..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 99999999999999999998877666555654331 11125455566777788888776655433
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.26 E-value=4.9e-08 Score=104.84 Aligned_cols=397 Identities=12% Similarity=0.106 Sum_probs=259.4
Q ss_pred hcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHH
Q 002718 409 SNLWSNICVANSILDMYGKCQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYG 485 (888)
Q Consensus 409 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 485 (888)
..+.-|..+|..|.-+..++|+++.+-+.|++...- ....|+.+...|...|....|+.+++.-....-.|+..+-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 445568889999999999999999999999987642 45679999999999999999999999877654445544443
Q ss_pred HHH-HHH-hccCChhHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc----C-------CHHHHHHHHHhcCCC---
Q 002718 486 SVL-KAC-AGQQALNYGMQIHSRIIKS--GM--GSNLFVGSALIDMYCKC----G-------MVEEAKKILKRTEER--- 545 (888)
Q Consensus 486 ~ll-~~~-~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~----g-------~~~~A~~~~~~~~~~--- 545 (888)
.+. +.| .+.+..+++..+-.+++.. +. ...+..+..+.-+|... . ...++.+.+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333 334 3456777777777666652 11 11233344444344321 1 134455666666432
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCCCCcchhhhhc
Q 002718 546 DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQ-EMQSDVYISSTLV 624 (888)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li 624 (888)
|..+.--+---|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... |... .....-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~--~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH--VLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh--hhchhhh
Confidence 332222233346777889999999999998866778888888888888899999999998877764 2111 0001111
Q ss_pred cchhhcCCHHHHHHH-------HH----------h---------CC-----CCCH-HHHHHHHHHHHhCCCHHHHHHHHH
Q 002718 625 DMYSKCGNVQDSRIM-------FE----------K---------SP-----KRDF-VTWNAMICGYAHHGLGEEALKVFE 672 (888)
Q Consensus 625 ~~~~~~g~~~~A~~~-------~~----------~---------~~-----~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 672 (888)
..-..-++.++|... |+ + +. ..+. .++..+..-....+ +.+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc
Confidence 112224455554322 22 1 11 0011 12221111111110 00000000
Q ss_pred HHHHCCCCC--CH------HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 002718 673 NMELENVKP--NH------ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQ 743 (888)
Q Consensus 673 ~m~~~g~~p--~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~ 743 (888)
|...-+.| +. ..|......+...+..++|...+.+.. ++.|- ...|......+...|.++||.+.|.
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 11111223 21 234556677889999999998888876 44443 3356777788889999999998887
Q ss_pred hC-CCCCC-HHHHHHHHHHHHHhCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 744 EM-PFEAD-DVIWRTLLSICKIHGNVEVAEE--AASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 744 ~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
.. .+.|+ +....++...+...|+-..|.. ++..+++++|.++.++..||.++.+.|+.++|.+.|...-+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 66 67785 5578888889999998888888 99999999999999999999999999999999999986644
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.7e-07 Score=93.09 Aligned_cols=200 Identities=12% Similarity=0.051 Sum_probs=142.0
Q ss_pred hcCCHHHHHHHHHhCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 002718 629 KCGNVQDSRIMFEKSPK---RDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLH 704 (888)
Q Consensus 629 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 704 (888)
...+.+.|..+-++..+ .++..+-.-...+.+.|+.++|.=.|+..+. +.| +...|..|+..|...|.+.||.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 34556666666665553 3444444445667788889999988988887 777 66889999999999999998887
Q ss_pred HHHHhHhccCCCCChhHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 705 YFNVMLSDYSLHPQLEHYSCMV-DILG-RSGQLNKALKLIQEM-PFEADD-VIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 705 ~~~~m~~~~~~~p~~~~~~~l~-~~l~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
.-+...+..+ .+..+.+.+. +.+. ..---++|.+++++. ..+|+- .....+...|...|..+.++.++++.+..
T Consensus 390 ~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 7776553322 3344444332 2222 223357888888876 677764 35666777888999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 002718 781 DPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEMK 859 (888)
Q Consensus 781 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 859 (888)
.| |...++.|++++...+.+.+|...+..... ..|+.+.-.+-++.++++++
T Consensus 468 ~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 468 FP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred cc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccC
Confidence 88 677889999999999999999887765433 34555666666777766665
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.1e-08 Score=103.75 Aligned_cols=274 Identities=15% Similarity=0.099 Sum_probs=174.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 002718 450 NAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKC 529 (888)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 529 (888)
-.-.+-+...+++.+..+++....+. .++....+..-|.++...|+..+-..+-..+++.- |....+|-++.--|.-.
T Consensus 248 ~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i 325 (611)
T KOG1173|consen 248 AEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMI 325 (611)
T ss_pred HHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHh
Confidence 33344555667777777777777665 34555566666667777777766666666666553 66777888888888888
Q ss_pred CCHHHHHHHHHhcCCCC---cccHHHHHHHHHcCCChHHHHHHHHHHHHC--C-CCCCHHHHHHHHHHhcCcccHHHHHH
Q 002718 530 GMVEEAKKILKRTEERD---VVSWNAIISGFSGAKRSEDAHKFFSYMLKM--G-VKPDDFTYATLLDTCGNLATVGLGMQ 603 (888)
Q Consensus 530 g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g-~~p~~~t~~~ll~a~~~~~~~~~a~~ 603 (888)
|+.++|++.|.+...-| ...|-.+...|+-.|..+.|+..+...-+. | ..|. --+---|.+.+++..|.+
T Consensus 326 ~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 326 GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHhccHHHHHH
Confidence 99999999998876433 357999999999999999998888776552 1 1222 122223555666677777
Q ss_pred HHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----C
Q 002718 604 LHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELE-----N 678 (888)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 678 (888)
.+.+..... +.|+.+.+-+.-+....+.+.+| ..+|+...+. .
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A-------------------------------~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAYTYEEYPEA-------------------------------LKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheeehHhhhHHH-------------------------------HHHHHHHHHHhhhccc
Confidence 666665532 23444444444444444444444 4444443310 0
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 002718 679 VKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRT 756 (888)
Q Consensus 679 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 756 (888)
-.| -..+++.|..+|.+.+++++|+..+++.+.. .+.+..+++.++-.|...|+++.|.+.+.+. .+.||...-..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 111 2346777777777777777777777776632 2335556777777777777777777777766 57777777777
Q ss_pred HHHHHHH
Q 002718 757 LLSICKI 763 (888)
Q Consensus 757 ll~~~~~ 763 (888)
+++.+..
T Consensus 528 lL~~aie 534 (611)
T KOG1173|consen 528 LLKLAIE 534 (611)
T ss_pred HHHHHHH
Confidence 7765543
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=1.2e-07 Score=101.81 Aligned_cols=441 Identities=16% Similarity=0.122 Sum_probs=257.3
Q ss_pred hCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCC---CCccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHh
Q 002718 308 TDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNC---GLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLS 384 (888)
Q Consensus 308 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 384 (888)
..+.-|..+|..|.-+...+|+++.+.+.|++...- ....|+.+-..+...|.-..|+.+++.-....-.|+..+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 346678889999999999999999999999985432 23479999999999999999999998876654445544443
Q ss_pred hHHH-Hhh-hhhchhhHHHHHHHHHHhc--CC--CchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHh
Q 002718 385 GAFS-ACA-VIAGYLEGLQVHGLAIKSN--LW--SNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQ 458 (888)
Q Consensus 385 ~ll~-a~~-~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 458 (888)
.+.. .|. +.+.++++...-..++... .. ..+..|..+.-+|+..-. ....+. -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~s------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKS------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChH------HH
Confidence 3333 333 3455555555544444311 00 111122222222211100 000000 01
Q ss_pred CCChhHHHHHHHHHHHcC-CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 002718 459 NGNEEETLFYFISMLHAI-MEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKK 537 (888)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 537 (888)
.....++++.+++.++.+ -.|+...|.++- ++-.++++.|.+...+..+.+-..+...+..|.-.+...+++.+|+.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 112345666666666543 233333333332 45566788888888888777666777777777777888888888888
Q ss_pred HHHhcCCC---CcccHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Q 002718 538 ILKRTEER---DVVSWNAIISGFSGAKRSEDAHKFFSYMLKM--GVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQ- 611 (888)
Q Consensus 538 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~- 611 (888)
+.+...+. |-+.-..-+..-..-++.++++.....+... ...|-..+.. .| ...+....+.-.
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g---~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EG---KLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hh---hhhhhhcccccCc
Confidence 77665432 1111111122222345666666555554431 0000000000 00 000000000000
Q ss_pred -CCCCCcchhhhhccchh---hcCCHHHHHHHHHhCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 002718 612 -EMQSDVYISSTLVDMYS---KCGNVQDSRIMFEKSPKRD------FVTWNAMICGYAHHGLGEEALKVFENMELENVKP 681 (888)
Q Consensus 612 -~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 681 (888)
.....+.++..+..... +.-..+.....+.....|+ ...|......+...+..++|...+.+... +.|
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~ 681 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDP 681 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cch
Confidence 00000111111111000 0000011111111111222 23566777788888999999888888776 667
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHH
Q 002718 682 -NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALK--LIQEM-PFEA-DDVIWR 755 (888)
Q Consensus 682 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~--~~~~~-~~~p-~~~~~~ 755 (888)
....|......+...|..++|.+.|.... -+.|+ +.....+..++.+.|+..-|.+ ++..+ .+.| ++..|.
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 55678877788899999999999999877 56676 4467889999999998777776 77766 5666 678999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Q 002718 756 TLLSICKIHGNVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 756 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 786 (888)
.+.....+.|+.+.|...|..++++++.+|.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999886653
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.22 E-value=1e-05 Score=86.14 Aligned_cols=550 Identities=12% Similarity=0.056 Sum_probs=242.8
Q ss_pred HHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHH
Q 002718 186 KACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALK 265 (888)
Q Consensus 186 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 265 (888)
.+......+..|..+++.+...... ..-|..+.+-|+..|+++-|.++|-+.. .++-.|..|.++|++++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHH
Confidence 3334445555565555555443221 1124445566667777777777765422 34455666667777777766
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCC-C
Q 002718 266 LFKIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNC-G 344 (888)
Q Consensus 266 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 344 (888)
+-++.. |-......|..-..-.-..|.+.+|++++-.+- .|+ ..|.+|-+.|..++.+++.+.-... =
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l 881 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHL 881 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhh
Confidence 655442 222233334333334445555555555542211 122 2356666666666666665543211 1
Q ss_pred CccHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHH--------------HHHHhc
Q 002718 345 LQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHG--------------LAIKSN 410 (888)
Q Consensus 345 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~--------------~~~~~~ 410 (888)
..+...+..-+-..|+...|..-|-+..+ |.+.+..+...+.++.+-++-. .....|
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig 952 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG 952 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence 12334444445555555555555443322 1222222222233332222110 011111
Q ss_pred CCCchh------hhHHHHHhhhccCChHHHHHHHhhcCC-CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcch
Q 002718 411 LWSNIC------VANSILDMYGKCQDVIEACHVFDEMER-RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFT 483 (888)
Q Consensus 411 ~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 483 (888)
-+.-+. ....-++..+..+.++-|..+-+-... +-....-.+..-+-..|++++|-..+-+.++.+ .-..|
T Consensus 953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln--tynit 1030 (1636)
T KOG3616|consen 953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNIT 1030 (1636)
T ss_pred cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc--cccch
Confidence 111111 112233444445555555544433221 222233333444556778888877776665532 11122
Q ss_pred HHHHHH-----HHhccC-ChhHHHHHHHH---------HHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 002718 484 YGSVLK-----ACAGQQ-ALNYGMQIHSR---------IIKSGMGSN--LFVGSALIDMYCKCGMVEEAKKILKRTEERD 546 (888)
Q Consensus 484 ~~~ll~-----~~~~~~-~~~~a~~~~~~---------~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 546 (888)
|...+- -+.+.| .+++|...|-. ..+. ..++ +.+++.-...-...|++..|..++-+..+|+
T Consensus 1031 wcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~-h~~~~l~dv~tgqar~aiee~d~~kae~fllrankp~ 1109 (1636)
T KOG3616|consen 1031 WCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA-HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRANKPD 1109 (1636)
T ss_pred hhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh-hChhhhHHHHhhhhhccccccchhhhhhheeecCCCc
Confidence 211110 012222 23333332210 0000 0111 1223333334445566666666666666666
Q ss_pred cccHHHHHHHHHcCCChHHHHHHHHHHH----------------HCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 002718 547 VVSWNAIISGFSGAKRSEDAHKFFSYML----------------KMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIK 610 (888)
Q Consensus 547 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 610 (888)
+ .++.|..++-|.+|+++-+... +.| .-....|..-.+-..+.|++.+|...+-.+-+
T Consensus 1110 i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lkinr 1183 (1636)
T KOG3616|consen 1110 I-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKINR 1183 (1636)
T ss_pred h-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhcc
Confidence 4 2445556666666666544321 111 11112222333333444555554444333321
Q ss_pred hCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002718 611 QEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFIS 688 (888)
Q Consensus 611 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 688 (888)
..... ..|+. ..+++|-++--+.. +.|.....+...++...|..+.|-+++--.-. -..
T Consensus 1184 dst~n-----d~l~e-----~~~~kaadl~ikfl~~d~nme~i~aa~~al~~~~~~e~aael~l~f~~---------~ke 1244 (1636)
T KOG3616|consen 1184 DSTDN-----DALAE-----HCTEKAADLSIKFLMGDENMEVIGAAGGALDEAGCHEAAAELLLLFDL---------SKE 1244 (1636)
T ss_pred CCCCc-----HHHHH-----HHHHHHHhhhhhhcCCccchhhHHhcchhhhcccccHHHHHHHHHhhh---------HHH
Confidence 11100 01111 11222222222211 33334444444455555555555554422111 012
Q ss_pred HHHHHHhcCCHHHHHHHHHHhH---------------hccCCCC---ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 002718 689 VLRACAHIGLVEKGLHYFNVML---------------SDYSLHP---QLEHYSCMVDILGRSGQLNKALKLIQEMPFEAD 750 (888)
Q Consensus 689 ll~a~~~~g~~~~a~~~~~~m~---------------~~~~~~p---~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~ 750 (888)
.+.++++...|.+|.++-++.. +..|-.. +.+ .-.-++++...+++++|++-..+-..+|-
T Consensus 1245 aida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vd-viaaidl~ien~qwdk~idtak~qnykpi 1323 (1636)
T KOG3616|consen 1245 AIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVD-VIAAIDLMIENDQWDKAIDTAKKQNYKPI 1323 (1636)
T ss_pred HHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchh-HHHHHHHHHhcccHHHHHHHHHhcccHHH
Confidence 3445555555555554444322 1111110 111 12346788888888888888777777776
Q ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHh-cCCCCcchHHHH
Q 002718 751 DVIWRTLLSIC-KIHGNVEVAEEAASSLLQ-LDPQDSSTYILL 791 (888)
Q Consensus 751 ~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l 791 (888)
..-|-++..+. ...|+...+..++++-=. .+|.|...|-++
T Consensus 1324 l~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i 1366 (1636)
T KOG3616|consen 1324 LDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLI 1366 (1636)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 66666665543 345777777777765433 245555555444
No 60
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=5.7e-07 Score=95.33 Aligned_cols=283 Identities=16% Similarity=0.191 Sum_probs=148.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 002718 456 QAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEA 535 (888)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 535 (888)
+.+.|+++.|+..|-+... ....+.+......+.+|+.+++.+..... ...-|..+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence 4455666666666654322 23345555666777777777777665532 223455667778888888888
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCC
Q 002718 536 KKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQS 615 (888)
Q Consensus 536 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 615 (888)
.++|-+.. .++--|..|.++|+|++|.++-.+.. |.......|..-..-.-..
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldeh-------------------- 837 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEH-------------------- 837 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhh--------------------
Confidence 88886542 45666778888888888877655432 2222223332222223333
Q ss_pred CcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 002718 616 DVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH--ATFISVLRAC 693 (888)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~ 693 (888)
|++.+|.+++-.+..|+.. |..|-++|..++.+++.++ ..|+. .|...+..-+
T Consensus 838 ---------------gkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 838 ---------------GKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred ---------------cchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHH
Confidence 4444444444333333321 3344555555555554443 23332 3444455555
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHH------HHHHHHH
Q 002718 694 AHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEA----DDVIWRT------LLSICKI 763 (888)
Q Consensus 694 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p----~~~~~~~------ll~~~~~ 763 (888)
...|+...|...|-+.. -|..-+++|-..+.+++|.++.+.-+-.. -...|.- ....+.+
T Consensus 893 e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk 962 (1636)
T KOG3616|consen 893 EAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNK 962 (1636)
T ss_pred HhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 55555555555554332 13444555555555555555554332000 0112211 1112233
Q ss_pred hCCHHH-------------HHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 764 HGNVEV-------------AEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 764 ~g~~~~-------------a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+|-++. |..+.+-.. ...-+..+..++-.+...|++++|.+.+-..-.
T Consensus 963 ~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 963 HGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 444433 333333222 233567788889999999999999776654433
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3e-11 Score=86.27 Aligned_cols=50 Identities=38% Similarity=0.540 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 002718 242 RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAA 291 (888)
Q Consensus 242 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (888)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.3e-08 Score=97.75 Aligned_cols=307 Identities=14% Similarity=0.194 Sum_probs=171.3
Q ss_pred hCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCCHH
Q 002718 458 QNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQQALNYGMQIHSRIIKSG-MGSN--LFVGSALIDMYCKCGMVE 533 (888)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~ 533 (888)
-+.+.++|+++|-+|.+. .|. ..+-.++-+.+.+.|..|.|+++|..+.++. .+.+ ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 357889999999999883 232 2344556666778888888888888887652 2111 223345666677778888
Q ss_pred HHHHHHHhcCCCCc---ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 002718 534 EAKKILKRTEERDV---VSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIK 610 (888)
Q Consensus 534 ~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 610 (888)
.|+.+|..+.+.+. .+...|+..|-+..+|++|++.-.++.+.+-.+..+-...
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq----------------------- 181 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ----------------------- 181 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH-----------------------
Confidence 88888877765333 3455567777777777777777776666543333221100
Q ss_pred hCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HH
Q 002718 611 QEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH--AT 685 (888)
Q Consensus 611 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t 685 (888)
.|.-|...+....+.+.|..++++.. +..+..=-.+.+.+...|+++.|++.++...+. .|+- .+
T Consensus 182 --------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ev 251 (389)
T COG2956 182 --------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEV 251 (389)
T ss_pred --------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHH
Confidence 01111122222333444444444433 122223333455566667777777777777663 4433 35
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 002718 686 FISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHG 765 (888)
Q Consensus 686 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 765 (888)
...|..+|.+.|+.+++...+.++.+. .+....-..|.+......-.+
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~----------------------------- 299 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGID----------------------------- 299 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChH-----------------------------
Confidence 566666777777777777777666532 233333333333332222233
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEE
Q 002718 766 NVEVAEEAASSLLQLDPQDSSTYILLSNIYA--DAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTF 834 (888)
Q Consensus 766 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 834 (888)
.|...+.+-+...|.--+.|.++.--.. +.|+|.+.+.+.+.|....++..|.+.--.-+=+.|+|
T Consensus 300 ---~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 300 ---AAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred ---HHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 3333333334444433333333322222 23557777777888877778777876655555555555
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.5e-08 Score=100.62 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=165.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 002718 459 NGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKI 538 (888)
Q Consensus 459 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 538 (888)
.|++..|..+..+-.+.+-.| ...|.....+.-..|+.+.+-.++.++.+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776655554332 2345555566777788888888888887764466777777777888888888888776
Q ss_pred HHhcC---CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhcCcccHHHHHHHHHHH
Q 002718 539 LKRTE---ERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDD-------FTYATLLDTCGNLATVGLGMQLHAQI 608 (888)
Q Consensus 539 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 608 (888)
.++.. ..++........+|.+.|++.+...++..|.+.|.--+. .++..+++-+...+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66554 456677788888889999999999999999888765544 35666666665555555544444444
Q ss_pred HHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002718 609 IKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFIS 688 (888)
Q Consensus 609 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 688 (888)
-+. ...++.+..+++.- +.+.|+.++|.++.++...++..|+ ..
T Consensus 256 pr~-lr~~p~l~~~~a~~-------------------------------li~l~~~~~A~~~i~~~Lk~~~D~~----L~ 299 (400)
T COG3071 256 PRK-LRNDPELVVAYAER-------------------------------LIRLGDHDEAQEIIEDALKRQWDPR----LC 299 (400)
T ss_pred cHH-hhcChhHHHHHHHH-------------------------------HHHcCChHHHHHHHHHHHHhccChh----HH
Confidence 322 22233333344444 4444555555555555444444444 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCH
Q 002718 689 VLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSICKIHGNV 767 (888)
Q Consensus 689 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~ 767 (888)
..-.+.+.++...=++..+...+.++..| ..+.+|..+|.+.+.+.+|.+.++.. +..|+...|.-+..++-+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 12234444555544454554444444444 33455555555555555555555543 4555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 002718 768 EVAEEAASSLL 778 (888)
Q Consensus 768 ~~a~~~~~~~~ 778 (888)
+.|....++.+
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=9.3e-08 Score=97.12 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=166.2
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHH
Q 002718 557 FSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDS 636 (888)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 636 (888)
+.-.|+...|...|+..+.....++.. |.-+-.++....+.++....|....+.+. .++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888765444332 66666778888888889999988888654 3566777777888888999999
Q ss_pred HHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 002718 637 RIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSD 712 (888)
Q Consensus 637 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 712 (888)
..=|++.. +.++..|-.+..+..+.++++++...|++.+.+ -|+ ...|+.....+...+++++|.+.|+..+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai-- 489 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI-- 489 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH--
Confidence 99999877 345567777877878888999999999999884 564 4688888899999999999999999987
Q ss_pred cCCCCC-------hhHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 002718 713 YSLHPQ-------LEHY--SCMVDILGRSGQLNKALKLIQEM-PFEAD-DVIWRTLLSICKIHGNVEVAEEAASSLLQLD 781 (888)
Q Consensus 713 ~~~~p~-------~~~~--~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 781 (888)
.+.|. +..+ ..++- +.=.+++..|.+++++. .+.|. ...+-+|...-.++|+.++|+.+|++...+-
T Consensus 490 -~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 490 -ELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34454 1111 11111 11238899999999987 67774 4578888888889999999999999988764
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.2e-05 Score=86.85 Aligned_cols=584 Identities=11% Similarity=0.095 Sum_probs=281.0
Q ss_pred hhHHHHHHHhcCchhHHHHhhhhCCC--CCceeh----HHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHHHHHHH
Q 002718 115 WNALIFGYAVRGEMGIARTLFEAMPE--RDVISW----NSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFAVALKA 187 (888)
Q Consensus 115 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~ 187 (888)
+..+...|-++|-...|++.+..... +..+.- --.+..|.-.-.++++.++++.|... .+..+ .+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~-NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA-NIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 55566677788888888887777653 111110 01133455556677788888888765 44444 332222222
Q ss_pred hcccCCchhHhHHH-------------HHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCC-------------
Q 002718 188 CSILEDGDFGVQLH-------------CFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSE------------- 241 (888)
Q Consensus 188 ~~~~~~~~~a~~~~-------------~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------- 241 (888)
+..+-..+...++| +.++. +..|+.+...-|.+-|+.|.+.+.+++-++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn--~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVN--FSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhc--cccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 22211111112222 22222 455666667788899999999888887654321
Q ss_pred ------------------CChhH--H----HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH-------------HH
Q 002718 242 ------------------RNWVS--W----NTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTY-------------AS 284 (888)
Q Consensus 242 ------------------~~~~~--~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------~~ 284 (888)
+|.+. | -..|..|++.-++...-.+...+....+ +.... .-
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC--~E~~ik~Li~~v~gq~~~de 843 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDC--SEDFIKNLILSVRGQFPVDE 843 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCC--cHHHHHHHHHHHhccCChHH
Confidence 11111 1 1134455554444443333333332221 11111 22
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHH
Q 002718 285 ILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEA 364 (888)
Q Consensus 285 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 364 (888)
+..-+-++.++..-...++..+..|. .|..++|+|...|...++-.+ +.+.+ |..--+..+.-||..+++.-|
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA 916 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLA 916 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceE
Confidence 33334455566666677777777774 578899999998887655332 11211 111111222334444333322
Q ss_pred HHHHHHHHHc----CCCCCchhHhhHHHHhhhhhch-----------hhHHHHHHHHHHhcCC--CchhhhHHHHHhhhc
Q 002718 365 LQLFRLLQKS----GLGFNEITLSGAFSACAVIAGY-----------LEGLQVHGLAIKSNLW--SNICVANSILDMYGK 427 (888)
Q Consensus 365 ~~~~~~m~~~----g~~p~~~t~~~ll~a~~~~~~~-----------~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~ 427 (888)
.-.|++=+-. .+......|-...+-+....+. ..-+++.+..+..+++ .|+.-.+.-+.++..
T Consensus 917 ~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 917 CVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred EEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 2222110000 0000111111111111111111 1123455555554442 234444555666666
Q ss_pred cCChHHHHHHHhhcCC-CCee-----eHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHH
Q 002718 428 CQDVIEACHVFDEMER-RDAV-----SWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGM 501 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~-~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 501 (888)
.+-..+-.++++++.- +++. .-|.+|-.-. ..+...+.+..+++-... .| .+...+...+-+++|.
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAF 1068 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHH
Confidence 6666677777766542 2221 1222222222 223344444444433221 11 1122233444556666
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 002718 502 QIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPD 581 (888)
Q Consensus 502 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 581 (888)
.+|+.. ..+....+.|++ ..+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+ .-|
T Consensus 1069 ~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adD 1132 (1666)
T KOG0985|consen 1069 AIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADD 1132 (1666)
T ss_pred HHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCC
Confidence 665543 233333333332 235566666666555544 3577777777777777777766542 235
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Q 002718 582 DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHH 661 (888)
Q Consensus 582 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 661 (888)
+..|.-+++.+.+.|.+++-...+....+..-+|.+ -+.|+-+|++.+++.+-.+... .||.........-|...
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhh
Confidence 566777777788888887777777777766555543 3567777777777766544332 33443333444444444
Q ss_pred CCHHHHHHHHHHHHH-------------------CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhH
Q 002718 662 GLGEEALKVFENMEL-------------------EN-VKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEH 721 (888)
Q Consensus 662 g~~~~A~~~~~~m~~-------------------~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 721 (888)
|.++.|.-+|..... .. -.-+..||..+-.+|...+.+.-| +|. ...+....+-
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiC-GL~iivhade 1281 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QIC-GLNIIVHADE 1281 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----Hhc-CceEEEehHh
Confidence 444444333322111 00 011234555555555444433322 222 1112223334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
..-++..|-..|.++|-+.+++..
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhh
Confidence 555666666666666666666644
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=7.9e-11 Score=84.12 Aligned_cols=50 Identities=36% Similarity=0.619 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002718 646 RDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAH 695 (888)
Q Consensus 646 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 695 (888)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.16 E-value=2.9e-09 Score=109.81 Aligned_cols=211 Identities=14% Similarity=0.104 Sum_probs=152.1
Q ss_pred ccHHHHHHHHHHHHHhC-CCC--CcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHH
Q 002718 596 ATVGLGMQLHAQIIKQE-MQS--DVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALK 669 (888)
Q Consensus 596 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 669 (888)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++.. +.+...|+.+...+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44556666666666532 122 23456777778999999999999998765 5577899999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 002718 670 VFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP-- 746 (888)
Q Consensus 670 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-- 746 (888)
.|++..+ +.|+ ..++..+..++...|++++|++.|++..+. .|+..........+...++.++|.+.+++.-
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 7884 578888999999999999999999998843 4543322222233456788999999996642
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 747 FEADDVIWRTLLSICKIHGNVEVAEEAASSLL-------QLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 747 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
..|+ .|.. .......|+...+ ..++.+. ++.|+.+.+|..+|.+|...|++++|...++...+..
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333 3332 1222234554433 2333333 5567778899999999999999999999988776543
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=5.1e-08 Score=93.87 Aligned_cols=281 Identities=15% Similarity=0.178 Sum_probs=181.9
Q ss_pred cCChHHHHHHHhhcCCCCeeeH---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcc------hHHHHHHHHhccCChh
Q 002718 428 CQDVIEACHVFDEMERRDAVSW---NAIIAVQAQNGNEEETLFYFISMLHAIMEPDEF------TYGSVLKACAGQQALN 498 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~ 498 (888)
..+.++|.++|-+|.+.|..++ -+|.+.|-+.|..+.|+.+-+.+.++ ||.. ..-.+-+-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4788999999999998776655 46778999999999999999998875 4432 2233445577889999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 002718 499 YGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGV 578 (888)
Q Consensus 499 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 578 (888)
.|+.+|..+.+.| ..-.....-|+..|-...+|++|.++-+++.+-+...++.-|.-|
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf--------------------- 182 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF--------------------- 182 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH---------------------
Confidence 9999999998865 344566778999999999999999998877665555555444321
Q ss_pred CCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCH----HHHHHH
Q 002718 579 KPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDF----VTWNAM 654 (888)
Q Consensus 579 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l 654 (888)
|.-+........+++.|...+....+.+. ..+..--.+.+.+...|+++.|.+.++.+.+.|. .+...|
T Consensus 183 ------yCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 183 ------YCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ------HHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11111112222334444444444444322 2233334455666677777777777777664443 255667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhh---
Q 002718 655 ICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGR--- 731 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~--- 731 (888)
..+|.+.|+.++....+.++.+. .+....-..+...-....-.+.|..++.+-. .-+|+...+..+++.-..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql---~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQL---RRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHH---hhCCcHHHHHHHHHhhhcccc
Confidence 78888888888888888888884 4444444444443333334555655555544 235888877777775432
Q ss_pred cCCHHHHHHHHHhC
Q 002718 732 SGQLNKALKLIQEM 745 (888)
Q Consensus 732 ~g~~~~A~~~~~~~ 745 (888)
.|+..+-+.+++.|
T Consensus 331 eg~~k~sL~~lr~m 344 (389)
T COG2956 331 EGRAKESLDLLRDM 344 (389)
T ss_pred ccchhhhHHHHHHH
Confidence 33445555555544
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=1.2e-08 Score=109.36 Aligned_cols=230 Identities=15% Similarity=0.141 Sum_probs=168.8
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-----CC-CCCc-chhhhhccchhhcCCHHHHHHHHHhCC--------CCC
Q 002718 583 FTYATLLDTCGNLATVGLGMQLHAQIIKQ-----EM-QSDV-YISSTLVDMYSKCGNVQDSRIMFEKSP--------KRD 647 (888)
Q Consensus 583 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~ 647 (888)
.|...+...|...|+++.|.++++..++. |. .|.+ .+.+.+...|...+++++|..+|+++. ..+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566777788888888888887777654 21 1222 223456778888899988888887654 112
Q ss_pred ---HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 002718 648 ---FVTWNAMICGYAHHGLGEEALKVFENMEL-----ENVKP-NHA-TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP 717 (888)
Q Consensus 648 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 717 (888)
..+++.|...|.+.|++++|...+++..+ .|..+ ... .+..+...|...+.+++|..+++...+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 24788888899999999888887776553 12222 332 466777789999999999999998775544222
Q ss_pred C------hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-
Q 002718 718 Q------LEHYSCMVDILGRSGQLNKALKLIQEM-------PF--EA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQL- 780 (888)
Q Consensus 718 ~------~~~~~~l~~~l~~~g~~~~A~~~~~~~-------~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 780 (888)
. ..+++.|..+|...|+++||.++++++ .. .+ ....++.+...|...++.+.|..+|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 1 347899999999999999999999876 11 22 2456778888898888999999999888765
Q ss_pred ---CCC---CcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 781 ---DPQ---DSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 781 ---~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
.|+ -..+|..|+-+|...|++|+|.++-..+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444 45578999999999999999998877664
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=2e-07 Score=92.96 Aligned_cols=286 Identities=14% Similarity=0.112 Sum_probs=182.8
Q ss_pred cCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C--cccHHHHHHHHHcCCChHHHHHH
Q 002718 494 QQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEER--D--VVSWNAIISGFSGAKRSEDAHKF 569 (888)
Q Consensus 494 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~ 569 (888)
.|++..|++....-.+.+ +.....|..-+.+--..|+.+.|-..+.+..++ | ....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655554 222233333444555556666666666665543 2 22334444555566666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHH
Q 002718 570 FSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFV 649 (888)
Q Consensus 570 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (888)
++++.+.+ +-+........++|.+.|++.....+...+.+.+.-.+.. +.. -...
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e-----------------~~~-------le~~ 230 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE-----------------AAR-------LEQQ 230 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH-----------------HHH-------HHHH
Confidence 66666543 2233445555566666666666666666666555422211 100 0124
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDIL 729 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 729 (888)
+|+.++.-....+..+.-...|++.-.+ .+-+...-.+++.-+.+.|+.++|.++.+...++ +..|+.. .+ -..
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~-~~~ 304 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RL-IPR 304 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HH-Hhh
Confidence 6777777666666666655666665443 4445666777888899999999999999998854 5566622 11 122
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHH
Q 002718 730 GRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 730 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 807 (888)
.+-|+...=++.+++- ..+.++..+.+|+..|.+++.+.+|...++.++...| +...|..++.++.+.|+.++|..+
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHH
Confidence 3455555444444433 2334558999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHH
Q 002718 808 RRLMR 812 (888)
Q Consensus 808 ~~~m~ 812 (888)
++.-.
T Consensus 384 r~e~L 388 (400)
T COG3071 384 RREAL 388 (400)
T ss_pred HHHHH
Confidence 88654
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.5e-08 Score=114.47 Aligned_cols=241 Identities=14% Similarity=0.064 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHh---------cCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCC
Q 002718 563 SEDAHKFFSYMLKMGVKPDDF-TYATLLDTC---------GNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGN 632 (888)
Q Consensus 563 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 632 (888)
.++|..+|++..+. .|+.. .+..+..++ ...+++++|...++.+++... .+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 45666667666653 44432 232222221 123457788888888777643 345666777778888899
Q ss_pred HHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 002718 633 VQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNV 708 (888)
Q Consensus 633 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 708 (888)
+++|...|++.. +.+...|..+...+...|++++|+..+++..+ +.|+. ..+..++.++...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999998765 44567888899999999999999999999999 67854 3444455567778999999999999
Q ss_pred hHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 709 MLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PFEADDV-IWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 709 m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
+.... .|+ ...+..+...|...|+.++|.+.++++ +..|+.. .++.+...+...| +.|...++++++..-..+
T Consensus 432 ~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 87432 243 445777888999999999999999987 4555544 4555555666666 488888888877654444
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 786 STYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
.....+..+|+-.|+-+.+... +.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 4445588899999998888777 55544
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.2e-08 Score=93.75 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVD 727 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 727 (888)
+...|.-+|.+.|+...|..-+++.++ ..|+. -++..+...|.+.|..+.|.+.|++.. .+.|+ .+..|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 455677799999999999999999999 68855 689999999999999999999999988 45564 557899999
Q ss_pred HHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchH
Q 002718 728 ILGRSGQLNKALKLIQEMPFEA----DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDK 803 (888)
Q Consensus 728 ~l~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 803 (888)
.||..|++++|...|++.-..| -+.+|..+..+..+.|+.+.|+..+++.++.+|+.+.+...+++...+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999999884333 356888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 002718 804 LSYTRRLMRQNKV 816 (888)
Q Consensus 804 a~~~~~~m~~~~~ 816 (888)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9998888776554
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=8.6e-07 Score=86.32 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=105.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHH-HHHHHHHh
Q 002718 652 NAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY-SCMVDILG 730 (888)
Q Consensus 652 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~ 730 (888)
.+|.+.+.-..++++.+..++....- +.-|...-..+..|.+..|.+.+|.++|-++. .-.+ .+-.+| ..|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHH
Confidence 34555566666777777777777663 22333444467788999999999999998775 2122 233445 45677889
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 731 RSGQLNKALKLIQEMPFEADDVIWR-TLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
+.|+++-|.+++-++..+.+....- .+.+-|.+.+.+=-|-++|+.+-.++| +++.+ .|+--...-++.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW---------eGKRGACaG~f~ 509 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW---------EGKRGACAGLFR 509 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc---------CCccchHHHHHH
Confidence 9999999999998887666665544 444579999999999999999988888 33332 133333455666
Q ss_pred HHHhCCCccCCC
Q 002718 810 LMRQNKVRKEPG 821 (888)
Q Consensus 810 ~m~~~~~~~~~~ 821 (888)
.+.....++.|+
T Consensus 510 ~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 510 QLANHKTDPIPI 521 (557)
T ss_pred HHHcCCCCCCch
Confidence 665544444444
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=2.2e-08 Score=113.18 Aligned_cols=210 Identities=14% Similarity=0.091 Sum_probs=161.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCCcchhhhhccchh---------hcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCC
Q 002718 596 ATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYS---------KCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGL 663 (888)
Q Consensus 596 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 663 (888)
++++.|.+.+++.++.... +...+..+..+|. ..+++++|...+++.. +.+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4567888888888875432 2334444443332 3456889999998766 4577889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHH
Q 002718 664 GEEALKVFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKL 741 (888)
Q Consensus 664 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~ 741 (888)
+++|...|++..+ ..|+ ...+..+..++...|++++|+..+++..+ +.|+.. .+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 6785 56788888999999999999999999984 455532 233344556778999999999
Q ss_pred HHhCC--CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 742 IQEMP--FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 742 ~~~~~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+++.- .+| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|....+.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98872 345 45557777778888999999999999999999988888999999999888 477665555543
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=5.9e-08 Score=97.42 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=128.9
Q ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccch
Q 002718 548 VSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMY 627 (888)
Q Consensus 548 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 627 (888)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++.|.+.+....+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 345666667777777777777777766542 2223344444444444455555544444444322
Q ss_pred hhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002718 628 SKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYF 706 (888)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 706 (888)
+.+...+..+...+...|++++|.+.|++..+....| ....+..+..++...|++++|...+
T Consensus 96 -----------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 96 -----------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -----------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344566667777778888888888888877643333 3345666777788888888888888
Q ss_pred HHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 707 NVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PF-EADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 707 ~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
++..... +.+...+..+...+...|++++|.+.+++. .. +.++..+..+...+...|+.+.|....+.+.+..|
T Consensus 159 ~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 159 TRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 8877432 123456777788888888888888888766 22 33556666677777788888888888877766544
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.01 E-value=8.3e-06 Score=90.30 Aligned_cols=354 Identities=14% Similarity=0.073 Sum_probs=202.3
Q ss_pred HHHHHHhhcC---CCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 002718 433 EACHVFDEME---RRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIK 509 (888)
Q Consensus 433 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 509 (888)
.|...+.... ..+...||.|.-. ..-|++.-|...|-+-+... +-...+|..+--.|....+++.|...+...+.
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 4555554433 2466777776655 55577777777776665532 23445666666667788888888888887766
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-----C---CCcccHHHHHHHHHcCCChHHHHHHHHHHHH------
Q 002718 510 SGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTE-----E---RDVVSWNAIISGFSGAKRSEDAHKFFSYMLK------ 575 (888)
Q Consensus 510 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------ 575 (888)
.. |.+...|-.........|+.-++..+|..-. + ++..-|-.-......+|+.++-+..-+.+-.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 54 4455555554445556777777777776522 1 2333444444455667766654433333211
Q ss_pred ---CCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCCCCcchhh----hhccchhhcCCHHHHHHHHHhCC-CC
Q 002718 576 ---MGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQ-EMQSDVYISS----TLVDMYSKCGNVQDSRIMFEKSP-KR 646 (888)
Q Consensus 576 ---~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~-~~ 646 (888)
.|.+.+.+.|.......-+.+....+.+...+.+.. ..+-+...|+ .....++..|.++.|..-+.... .-
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ev 1037 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEV 1037 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhH
Confidence 133445567777666666667666666665554422 1122333343 34455666788887766665443 11
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHH
Q 002718 647 DFVTWNAMICGYAHHGLGEEALKVFENMELENVKP---NH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY 722 (888)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 722 (888)
+...-..-+ +..-.|+++++++.|++... +.- |. +....++.+....+.-+.|...+-+..... .|+....
T Consensus 1038 dEdi~gt~l-~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls--~~~~~sl 1112 (1238)
T KOG1127|consen 1038 DEDIRGTDL-TLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS--KVQASSL 1112 (1238)
T ss_pred HHHHhhhhH-HHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC--ccchhhH
Confidence 111111111 12446889999999999887 332 32 334455556667778888888777766432 3555544
Q ss_pred HHHHHHHhhcCC---HHHHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 002718 723 SCMVDILGRSGQ---LNKALKLIQEMP----FEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIY 795 (888)
Q Consensus 723 ~~l~~~l~~~g~---~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 795 (888)
-++.-++.-..+ ...+++-+.+.+ +.-++.....+ .+..+|+-....+..++.+-.+|.|+..+.+|.+=|
T Consensus 1113 l~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~vry 1190 (1238)
T KOG1127|consen 1113 LPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSVRY 1190 (1238)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 444333322222 222222222221 11122222222 345678888999999999999999999999998533
Q ss_pred H
Q 002718 796 A 796 (888)
Q Consensus 796 ~ 796 (888)
+
T Consensus 1191 a 1191 (1238)
T KOG1127|consen 1191 A 1191 (1238)
T ss_pred H
Confidence 3
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=3.9e-06 Score=87.81 Aligned_cols=366 Identities=13% Similarity=0.130 Sum_probs=211.1
Q ss_pred hccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHhccCChhHHHHHH
Q 002718 426 GKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQQALNYGMQIH 504 (888)
Q Consensus 426 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 504 (888)
.+.+..|+|...++...+.+..+...-...+-+.|++++|+++|+.+.+.+..-- ...-..++.+-... ..
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 4678888888888855555544555556677788999999999999877654321 11122222211110 00
Q ss_pred HHHHHhCCCCchhHHHHH---HHHHHhcCCHHHHHHHHHhcC--------CCCc-----c-----cHHHHHHHHHcCCCh
Q 002718 505 SRIIKSGMGSNLFVGSAL---IDMYCKCGMVEEAKKILKRTE--------ERDV-----V-----SWNAIISGFSGAKRS 563 (888)
Q Consensus 505 ~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g~~ 563 (888)
..+......| ..+|..+ .-.+...|++.+|+++++... +.|. . .-..|.-++...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111111122 2233333 345667899999999988772 1111 1 122344567788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHH----HHHHHHHhcCcccHH-HHHHHHHH-----------HHHhCCCCCcchhhhhccch
Q 002718 564 EDAHKFFSYMLKMGVKPDDFT----YATLLDTCGNLATVG-LGMQLHAQ-----------IIKQEMQSDVYISSTLVDMY 627 (888)
Q Consensus 564 ~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~-~a~~~~~~-----------~~~~~~~~~~~~~~~li~~~ 627 (888)
++|..++...++.. .+|... .|.++..-....-++ .....++. ............-+.++.+|
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 444422 222322211111111 01111111 11100011122224455554
Q ss_pred hhcCCHHHHHHHHHhCCCCC-HHHHHHHHH-HHH-hCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 002718 628 SKCGNVQDSRIMFEKSPKRD-FVTWNAMIC-GYA-HHGLGEEALKVFENMELENVKPNH--ATFISVLRACAHIGLVEKG 702 (888)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a 702 (888)
. +..+.+.+......... ...+.+++. ++. +.....+|.+++...-+ -.|.. +.....+......|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 44556666666665322 233334433 332 22357888888888777 46644 4455556677889999999
Q ss_pred HHHHH--------HhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHhC
Q 002718 703 LHYFN--------VMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM--------PFEAD-DVIWRTLLSICKIHG 765 (888)
Q Consensus 703 ~~~~~--------~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g 765 (888)
++++. ... +.+..|. +...++.++.+.++.+-|.+++.+. ...+. ..+|.-+...-.++|
T Consensus 396 ~~il~~~~~~~~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99998 444 2244444 4567888888888765555555433 22222 234555556666789
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 766 NVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 766 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
+-+.|...++++++.+|+|......+.-+|+... .+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 9999999999999999999999999998888764 455555443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=97.42 Aligned_cols=227 Identities=15% Similarity=0.130 Sum_probs=137.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCccc
Q 002718 520 SALIDMYCKCGMVEEAKKILKRTEE--RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLAT 597 (888)
Q Consensus 520 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 597 (888)
+-+..+|.+.|.+.+|.+.|+...+ +-+.||--|-.+|.+..+++.|+.+|.+-.+. .|-.+||..=
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g--------- 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG--------- 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh---------
Confidence 4455555555555555555554432 34445555555555555555555555554442 3444443211
Q ss_pred HHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002718 598 VGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENM 674 (888)
Q Consensus 598 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 674 (888)
+...+-..++.++|.++++... +.|+.+.-++..+|.-.++.+-|+..|+++
T Consensus 296 -------------------------~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 296 -------------------------QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -------------------------hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 1112222233334444443322 223333334444555556666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHH
Q 002718 675 ELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEA--DDV 752 (888)
Q Consensus 675 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p--~~~ 752 (888)
.+.|+ -+...|+.+.-+|.-.+++|-++.-|++.... ..+| -..
T Consensus 351 LqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst---------------------------------at~~~~aaD 396 (478)
T KOG1129|consen 351 LQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST---------------------------------ATQPGQAAD 396 (478)
T ss_pred HHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh---------------------------------ccCcchhhh
Confidence 66653 24555666666666666666666666555421 0123 246
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
+|-.+......-||+..|.+.|+-++.-+|++..+++.|+-+-.+.|+.++|..++...++..+
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 7888887777889999999999999999999999999999999999999999999998876543
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.95 E-value=8.9e-07 Score=95.13 Aligned_cols=236 Identities=14% Similarity=0.157 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC----------Ccc-cHHHHHHHHHcCCChHHHHHHHHHHHHC---CCCCC-
Q 002718 517 FVGSALIDMYCKCGMVEEAKKILKRTEER----------DVV-SWNAIISGFSGAKRSEDAHKFFSYMLKM---GVKPD- 581 (888)
Q Consensus 517 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~- 581 (888)
.+...|..+|...|+++.|..+++...+. .+. ..+.+...|...+++.+|..+|+++... ..-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666554321 111 1234556677778888888888777541 11222
Q ss_pred ---HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHH-HHHHH
Q 002718 582 ---DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFV-TWNAM 654 (888)
Q Consensus 582 ---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~l 654 (888)
..+++.|-.+|.+.|++++|...++.+.+ ++++.. .+.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHH
Confidence 23444455556666666666665544433 222211 22332 45566
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhcc----C-CCCC-hhH
Q 002718 655 ICGYAHHGLGEEALKVFENMELE---NVKPNH----ATFISVLRACAHIGLVEKGLHYFNVMLSDY----S-LHPQ-LEH 721 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~ 721 (888)
+..+...+++++|..+++...+. -..++. .++..|...|.+.|++++|.++|++++... + ..+. ..+
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788888899998888765542 122333 478999999999999999999999887532 1 1222 346
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEM--------PFEAD-DVIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
++.|...|.+.++..+|.++|.+. +..|+ ..+|..|...|...|+++.|+++.++++..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 788899999999999888888765 23344 357999999999999999999999998743
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.5e-05 Score=77.96 Aligned_cols=190 Identities=14% Similarity=0.087 Sum_probs=131.2
Q ss_pred hhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 002718 622 TLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGL-------GEEALKVFENMELENVKPNHA-TFISVLRAC 693 (888)
Q Consensus 622 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 693 (888)
.|+-.|.+.+++++|..+.+...+..+.-|-.-.-.++.+|+ .+-|.+.|+-.-+++..-|.. ---++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 466678999999999999999987776655444444555554 455666665554555444432 234555666
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHH-HhCCHHHH
Q 002718 694 AHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP-FE-ADDVIWRTLLSICK-IHGNVEVA 770 (888)
Q Consensus 694 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~-~~g~~~~a 770 (888)
.-..++|+.+.+++.+.+ |=. .+...--.+..+++..|.+.+|+++|-... .+ .|..+|.+++.-|. ..+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~-NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFT-NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-Hhc-CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 666789999999999874 222 333333467889999999999999998874 22 46778888887665 45677777
Q ss_pred HHHHHHHHhcC-CC-CcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 771 EEAASSLLQLD-PQ-DSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 771 ~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
-.++- +.+ |. .-+..-+.++.+++.+.+-=|.+.+..++...+
T Consensus 448 W~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 448 WDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 65554 443 32 334466778999999999999999998876443
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.8e-05 Score=79.15 Aligned_cols=307 Identities=12% Similarity=0.028 Sum_probs=216.0
Q ss_pred CCCCcchHHHHHHHHh--ccCChhHHHHHHHHHH-HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH
Q 002718 477 MEPDEFTYGSVLKACA--GQQALNYGMQIHSRII-KSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAI 553 (888)
Q Consensus 477 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 553 (888)
+.|...+....+.+++ ..++...+.+.+-.+. ..-++.|+.....+.+.+...|+.++|...|++...-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3444444444444432 2333334444444443 345677888889999999999999999999998876555443332
Q ss_pred ---HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhc
Q 002718 554 ---ISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKC 630 (888)
Q Consensus 554 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 630 (888)
.-.+.+.|+.+....+...+.... .-+..-|..-+...-...+++.|..+-+..++... .+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhc
Confidence 223467888888888888776532 12222233333334456788888888887776532 2233333333456678
Q ss_pred CCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH-HHHHh-cCCHHHHHH
Q 002718 631 GNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVL-RACAH-IGLVEKGLH 704 (888)
Q Consensus 631 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll-~a~~~-~g~~~~a~~ 704 (888)
|+.++|.-.|.... +-+..+|..|+..|...|++.+|.-+-++... .-| +..+...+. ..|.- ...-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999998765 45788999999999999999999998887766 344 555655553 33332 334578999
Q ss_pred HHHHhHhccCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 705 YFNVMLSDYSLHPQL-EHYSCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 705 ~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
++++-. .+.|+- .....+..++.+.|+.++++.++++. ...||...-+.|...+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 998876 566763 35677888999999999999999987 6789999999999999999999999999999999999
Q ss_pred CCcchHHH
Q 002718 783 QDSSTYIL 790 (888)
Q Consensus 783 ~~~~~~~~ 790 (888)
++..+..-
T Consensus 503 ~~~~sl~G 510 (564)
T KOG1174|consen 503 KSKRTLRG 510 (564)
T ss_pred cchHHHHH
Confidence 77655433
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1e-05 Score=84.84 Aligned_cols=421 Identities=11% Similarity=0.106 Sum_probs=209.5
Q ss_pred HHhhhcCCChhhHHHHhcccCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChh
Q 002718 220 VDMYAKCKKLDDSVSLFNRMSE---RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLK 296 (888)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 296 (888)
++.+.+.|++++|.+..+.+.. .+...+.+=+.++.+.++|++|+.+.+.-... .+++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~------------- 79 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVIN------------- 79 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcc-------------
Confidence 4566667777777766666543 23445556666666667777666444332110 0000
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHh--hcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 002718 297 LGTQLHAHALKTDFEMDVIVGTATLDMY--AKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKS 374 (888)
Q Consensus 297 ~a~~~~~~~~~~g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 374 (888)
.+. +=.+| .+.+..++|...++.....+...-..-...+.+.|++++|+.+|+.+.+.
T Consensus 80 -----------------~~~---fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 80 -----------------SFF---FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred -----------------hhh---HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 000 12233 35688888888888555555445555567788889999999999999776
Q ss_pred CCCCCc-hhHhhHHHHhhhhhchhhHHHHHH-HHHHhcCCC--chhhhHHHHHhhhccCChHHHHHHHhhcC--------
Q 002718 375 GLGFNE-ITLSGAFSACAVIAGYLEGLQVHG-LAIKSNLWS--NICVANSILDMYGKCQDVIEACHVFDEME-------- 442 (888)
Q Consensus 375 g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~-~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------- 442 (888)
+..--. ..-..++.+... .-. .+......| +...+-.....+...|++..|+++++...
T Consensus 140 ~~dd~d~~~r~nl~a~~a~---------l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 140 NSDDQDEERRANLLAVAAA---------LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred CCchHHHHHHHHHHHHHHh---------hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 543221 111222221111 111 111111222 12222233445677899999999888762
Q ss_pred CCCe----------eeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHH---HHhccCChhH--HHHHHHHH
Q 002718 443 RRDA----------VSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLK---ACAGQQALNY--GMQIHSRI 507 (888)
Q Consensus 443 ~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~~ 507 (888)
..|. ..---|...+...|+.++|..++...++.. .+|........+ +...-.++-. .+..++..
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 1111 122334556778899999999999988874 344433222221 2222222111 11111111
Q ss_pred HH-----------hCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-cccHHHHHHHHH--cCCChHHHHHHHHHH
Q 002718 508 IK-----------SGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERD-VVSWNAIISGFS--GAKRSEDAHKFFSYM 573 (888)
Q Consensus 508 ~~-----------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m 573 (888)
.. ..-...+.--+.++.+|. +..+.+.++....+... ...+.+++.... +...+..+.+++...
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 00 000111122234444443 45566666666665432 233444443322 222456666666666
Q ss_pred HHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHH--------HHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC-
Q 002718 574 LKMGVKPDDFTYATLLDTCGNLATVGLGMQLHA--------QIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP- 644 (888)
Q Consensus 574 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~- 644 (888)
-+....-.....-..++.....|+++.|.+++. .+.+.+. .+.+..+++.+|.+.++-+.|..++++..
T Consensus 368 ~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 368 ADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred hccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 554211123444455556677788888888877 3333332 23344556666666666666655554432
Q ss_pred -----CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 002718 645 -----KRDF----VTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAH 695 (888)
Q Consensus 645 -----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 695 (888)
.... ..|.-++..-.++|+.++|..+++++.+ ..| |..+...++.+|++
T Consensus 446 ~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 446 WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHh
Confidence 0111 1222223333344555555555555554 222 34444455554444
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=4.6e-07 Score=93.49 Aligned_cols=229 Identities=10% Similarity=-0.049 Sum_probs=148.6
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHH
Q 002718 561 KRSEDAHKFFSYMLKMG-VKPD--DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSR 637 (888)
Q Consensus 561 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 637 (888)
+..+.++.-+.+++... ..|+ ...|...-..+...|+.+.|...+...++... .+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455556665555432 1222 23344444556666777777777777666543 34567777778888888888888
Q ss_pred HHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccC
Q 002718 638 IMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYS 714 (888)
Q Consensus 638 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 714 (888)
+.|++.. +.+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|++....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-- 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-- 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--
Confidence 8888765 34567888899999999999999999999998 6785542222223345678899999999775532
Q ss_pred CCCChhHHHHHHHHHhhcCCHHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCc
Q 002718 715 LHPQLEHYSCMVDILGRSGQLNK--ALKLIQEM-P----FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP-QDS 785 (888)
Q Consensus 715 ~~p~~~~~~~l~~~l~~~g~~~~--A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~ 785 (888)
..|+...+ .++..+ .|+.++ +.+.+.+. . ..| ....|..+...+...|+++.|+..++++++.+| +..
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23433222 333333 444433 33333221 1 122 345799999999999999999999999999997 555
Q ss_pred chHHHHHHHHHH
Q 002718 786 STYILLSNIYAD 797 (888)
Q Consensus 786 ~~~~~l~~~~~~ 797 (888)
.....+..+...
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=5.4e-05 Score=80.45 Aligned_cols=443 Identities=13% Similarity=0.107 Sum_probs=256.4
Q ss_pred hcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCC---CccHHHHHHHHHhCCChhHHHH
Q 002718 290 AALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCG---LQSYNAIIVGYAQNGQGVEALQ 366 (888)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 366 (888)
...+++..+....+.+++ +++....+....--.+...|+.++|......-...| .++|..+.-.+-...++++|+.
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 345566666666666665 332222232222223456788899988887755544 5689998888888899999999
Q ss_pred HHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcC---C
Q 002718 367 LFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEME---R 443 (888)
Q Consensus 367 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~ 443 (888)
.|+..... .||... ++.-|.-.-+..++++-......... .
T Consensus 97 cy~nAl~~--~~dN~q----------------------------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 97 CYRNALKI--EKDNLQ----------------------------------ILRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHHhc--CCCcHH----------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 99988765 343322 11112112222233332222222222 2
Q ss_pred CCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCcchHHHHHHH------HhccCChhHHHHHHHHHHHhCCCCch
Q 002718 444 RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAI-MEPDEFTYGSVLKA------CAGQQALNYGMQIHSRIIKSGMGSNL 516 (888)
Q Consensus 444 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~ 516 (888)
.....|.....++.-.|+...|..+++...+.. -.|+...+...... ....|..+.+.+.+...... +....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHH
Confidence 245678888888888888888888888887664 24555555433322 34566666666665543322 11222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC--CcccHHH-HHHHHHcCCChHHHH-HHHHHHHHCCCCCCHHH-HHHHHHH
Q 002718 517 FVGSALIDMYCKCGMVEEAKKILKRTEER--DVVSWNA-IISGFSGAKRSEDAH-KFFSYMLKMGVKPDDFT-YATLLDT 591 (888)
Q Consensus 517 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t-~~~ll~a 591 (888)
..-..-.+.+.+.+++++|..++..+..+ |-..|.. +..++.+-.+..+++ .+|....+. .|.... -..-++.
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSV 297 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHH
Confidence 23344566788889999999999888754 3344433 334443333334444 555555442 111111 1111111
Q ss_pred hcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCC---HHH-HHHHHHh--------------CCCCCHHHHHH
Q 002718 592 CGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGN---VQD-SRIMFEK--------------SPKRDFVTWNA 653 (888)
Q Consensus 592 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~-A~~~~~~--------------~~~~~~~~~~~ 653 (888)
.....-.+....++...++.|+++ ++..+...|-.-.. +++ +..+... ..+|....|+.
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 111222333444555666666643 22233322222111 111 1111111 11455566654
Q ss_pred --HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHh
Q 002718 654 --MICGYAHHGLGEEALKVFENMELENVKPNHA-TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILG 730 (888)
Q Consensus 654 --li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~ 730 (888)
++..|-..|+++.|...++..+. -.|+.+ -|..-.+.+.|.|++++|...+++..+- ..||...-+--+.-..
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Confidence 67788999999999999999988 478764 6777788999999999999999998732 2455544445667778
Q ss_pred hcCCHHHHHHHHHhCCCCC---------CHHHHHHHHH--HHHHhCCHHHHHHHHHHHHh
Q 002718 731 RSGQLNKALKLIQEMPFEA---------DDVIWRTLLS--ICKIHGNVEVAEEAASSLLQ 779 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~p---------~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~ 779 (888)
|+.+.++|.++.....-+. -...|-.+-. +|.+.|++..|.+-+..+..
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999998887662111 1234655543 67788888888776665544
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=2.6e-05 Score=84.39 Aligned_cols=246 Identities=9% Similarity=0.096 Sum_probs=112.7
Q ss_pred HHhcCChhHHHHHHhcCCCCCcchhhHHHHHHHhcCchhHHHHhhhhCCC-----------CCc-eehHHHHHHHhhCCC
Q 002718 91 YIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPE-----------RDV-ISWNSLLSGYLLVGD 158 (888)
Q Consensus 91 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~g~ 158 (888)
|.--|+.+.|.+-...+.. ...|..|.+.+.+..+++-|.-.+-.|.. .|. ..=......-..-|.
T Consensus 738 yvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 3445677777665555543 45667777777777666666665555532 011 111111111134455
Q ss_pred hhhHHHHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcc
Q 002718 159 FSKAIDVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNR 238 (888)
Q Consensus 159 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (888)
.++|+.+|++-.+ |..+-+.+...|.+++|.++-+.--+-.+ ..||..-..-+-..++.+.|++.|++
T Consensus 816 lEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 816 LEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 5566655555433 22233334445555555544332111111 11232223333334455555555544
Q ss_pred cCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHh
Q 002718 239 MSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGT 318 (888)
Q Consensus 239 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 318 (888)
-..+-...+..|.. ++.....+.++ .-|...|.---+-.-..|+.+.|..++..... |-
T Consensus 884 ~~~hafev~rmL~e------~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKE------YPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred cCChHHHHHHHHHh------ChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 32211100000000 00000001111 11222333333334456667777666654432 34
Q ss_pred HHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002718 319 ATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQK 373 (888)
Q Consensus 319 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 373 (888)
+++...|-.|+.++|-++-++-. |....-.|...|-..|++.+|+..|.+.+.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 45566666777777777665532 334455566666777777777777766543
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5.4e-05 Score=82.11 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=66.2
Q ss_pred CCcccHHHHHHHhhccCCCchhHHHHHHHHHh--------CCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCCCCcchh
Q 002718 44 PKTITFSRIFQELTHDQAQNPGKQAHARLIVS--------GFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSW 115 (888)
Q Consensus 44 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 115 (888)
-+...+.++.+-|.+..+++-|+=++.+|... ..+.+..+-....-.-...|.+++|..++.+..+ |
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~ 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----Y 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----H
Confidence 34455666777777777666666555544321 1111112222333333455677777777776655 3
Q ss_pred hHHHHHHHhcCchhHHHHhhhhCCCC-CceehHHHHHHHhhCCChhhHHHHHHHH
Q 002718 116 NALIFGYAVRGEMGIARTLFEAMPER-DVISWNSLLSGYLLVGDFSKAIDVFVEM 169 (888)
Q Consensus 116 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 169 (888)
-.|=..|-..|++++|.++-+.--+- =..||..-..-+-..++.+.|++.|++.
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 33444566667777777765542221 1124555555555567777777777754
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=5.6e-07 Score=82.99 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=143.6
Q ss_pred hccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 002718 623 LVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGL 698 (888)
Q Consensus 623 li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 698 (888)
|.-.|...|+...|.+-+++.. +.+..+|..+...|-+.|+.+.|.+-|++... +.| +....|....-+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence 4456778888888888888766 33446788888888888888888888888888 677 44677777777888888
Q ss_pred HHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002718 699 VEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASS 776 (888)
Q Consensus 699 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 776 (888)
+++|...|++....-...-...+|..++-+-.++|+.+.|.+.+++. ...| .+...-.+.....+.|++-.|...+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 88888888888755222223457788888888888888888888876 3444 455677777777788888888888888
Q ss_pred HHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 777 LLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 777 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
.....+-......+...+-...|+-+.+.+.-..+..
T Consensus 199 ~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 199 YQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777788888888888888888888777666654
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=5.1e-07 Score=86.97 Aligned_cols=223 Identities=13% Similarity=0.053 Sum_probs=141.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 002718 450 NAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKC 529 (888)
Q Consensus 450 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 529 (888)
+.|..+|.+.|.+.+|...|+.-+.. .|-+.||..+-++|.+..++..|+.++.+-.+. ++.|+.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777776664 566667777777888888888887777776654 355555556667777778
Q ss_pred CCHHHHHHHHHhcCCC---CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHH
Q 002718 530 GMVEEAKKILKRTEER---DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHA 606 (888)
Q Consensus 530 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 606 (888)
++.++|.++++...+. ++.+.-.+..+|.-.++++-|+..++++.+.|+. +...|..+--.|...+.+|.+..-+.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 8888888888877643 4555556667788888899999999999888853 55566666667777778887777777
Q ss_pred HHHHhCCCCC--cchhhhhccchhhcCCHHHHHHHHHhCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002718 607 QIIKQEMQSD--VYISSTLVDMYSKCGNVQDSRIMFEKSPK---RDFVTWNAMICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 607 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
.....--.|+ ..+|..|.......|++.-|.+.|.-... .+..++|.|.-.-.+.|++++|..+++....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7766533332 23344444444444554444444443331 1223444444444444444444444444333
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.76 E-value=0.00013 Score=77.59 Aligned_cols=410 Identities=13% Similarity=0.073 Sum_probs=251.0
Q ss_pred hhhhchhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCC---CCeeeHHHHHHHHHhCCChhHHHH
Q 002718 391 AVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLF 467 (888)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 467 (888)
...|+.++|........+..+ .+.+.|..+.-.+....++++|.+.+..... .|...|.-+.-.-++.++++....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 344555566555555444322 2345567777777788889999999987653 356677777777778888888888
Q ss_pred HHHHHHHcCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhC-CCCchhHHHHHH------HHHHhcCCHHHHHHHH
Q 002718 468 YFISMLHAIMEPD-EFTYGSVLKACAGQQALNYGMQIHSRIIKSG-MGSNLFVGSALI------DMYCKCGMVEEAKKIL 539 (888)
Q Consensus 468 ~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~ 539 (888)
.-.++.+. .|. ...|..+..+..-.|+...|..+.+...+.. -.|+...+.-.. ....+.|..+.|.+-+
T Consensus 131 tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 131 TRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 88887774 343 4567777778888899999999999998765 345555544322 3356778888888887
Q ss_pred HhcCCC--Cccc-HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHhCCC
Q 002718 540 KRTEER--DVVS-WNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCG-N-LATVGLGMQLHAQIIKQEMQ 614 (888)
Q Consensus 540 ~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~-~~~~~~a~~~~~~~~~~~~~ 614 (888)
...... |-.. -.+-...+.+.++.++|..++..++.. .||..-|.-.+..+. + .+..+....++....+.-..
T Consensus 209 ~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 209 LDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred HhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 765532 2222 234556788899999999999999986 688777766665544 2 23333333555555443111
Q ss_pred CC--cchhhhhccchhhcCCHHHHHHHHHhCCCCC-HHHHHHHHHHHHhCCCHHH----HHHHHHHHHHCC---------
Q 002718 615 SD--VYISSTLVDMYSKCGNVQDSRIMFEKSPKRD-FVTWNAMICGYAHHGLGEE----ALKVFENMELEN--------- 678 (888)
Q Consensus 615 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g--------- 678 (888)
.. ..+--.++.. ..-.+...+++..+.++. +..+..+.+.|-.-...+- +..+..-+...|
T Consensus 287 ~e~p~Rlplsvl~~---eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 287 HECPRRLPLSVLNG---EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred cccchhccHHHhCc---chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccc
Confidence 11 1111111111 111122222333222221 1222333333322111111 111111111111
Q ss_pred -CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHH
Q 002718 679 -VKPNH--ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-EHYSCMVDILGRSGQLNKALKLIQEMP--FEADDV 752 (888)
Q Consensus 679 -~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p~~~ 752 (888)
-.|.. .|+..+...+-+.|+++.|..+++... +..|+. +.|..-..++..+|.+++|..++++.. -.||..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 14444 356677788999999999999999988 667774 467777889999999999999999883 345655
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQLDPQD---------SSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
+-.--..-..+.++.++|.+++.+.-+.+-+- .....-=|.+|.++|+|-+|++=+..+
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 55455556667789999999988876655311 111223366788888888776544433
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=2e-07 Score=97.24 Aligned_cols=216 Identities=15% Similarity=0.131 Sum_probs=154.9
Q ss_pred cCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHH
Q 002718 593 GNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALK 669 (888)
Q Consensus 593 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 669 (888)
.+.|++.+|.-.|+..++..+ -+...|.-|.-.-...++-..|+..+.+.. +.|....-.|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 456677777777777776643 345566666666666666666666666544 4566666777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHH--------HHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 002718 670 VFENMELENVKPNHATFISV--------LRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKL 741 (888)
Q Consensus 670 ~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~ 741 (888)
.++..+.. .|...-...- -.............++|-.+....+..++++.+.+|.-+|--.|.+++|.+-
T Consensus 375 ~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776553 2211000000 0111122233444555666655556667888899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 742 IQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 742 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
|+.+ ..+| |..+||-|...+......++|+.+|.+++++.|......+.|+..|...|.++||.+.+=..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9987 6777 56789999999988889999999999999999999999999999999999999998765543
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=9.3e-06 Score=84.35 Aligned_cols=214 Identities=15% Similarity=0.126 Sum_probs=144.5
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHH----------HHHHHH
Q 002718 586 ATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFV----------TWNAMI 655 (888)
Q Consensus 586 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 655 (888)
..+.++.-+..+++.+.+-+...+... .++.-++.....|...|........-+...+.... +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555566667777776666654 44555566666677777666665554443322111 122234
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCC
Q 002718 656 CGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQ 734 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~ 734 (888)
.+|.+.++++.|+..|++....--.||. ..+....+++....+... -+.|... -...=..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 4666667788888888776654333332 223334445554444433 3344432 11223667889999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 735 LNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 735 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
+.+|++.+.++ ...| |+..|.....++.+.|++..|..-+++.++++|+....|..-+-++....+|++|.+.+.+-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 3445 778899999999999999999999999999999999999999999999999999999988655
Q ss_pred h
Q 002718 813 Q 813 (888)
Q Consensus 813 ~ 813 (888)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 4
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.75 E-value=1.3e-05 Score=78.17 Aligned_cols=306 Identities=11% Similarity=0.110 Sum_probs=159.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHH---HHHhccCChhHHHHHHHHHHHhCCCCchhHH-HHHHHHHHh
Q 002718 453 IAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVL---KACAGQQALNYGMQIHSRIIKSGMGSNLFVG-SALIDMYCK 528 (888)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~ 528 (888)
...+...|++..|+..|...++ .|+..|.++. ..|...|+...|+.-+...++. .||-..- ..-...+.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3344445555555555555544 2222232222 2244444444444444444433 2332111 111234667
Q ss_pred cCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 002718 529 CGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQI 608 (888)
Q Consensus 529 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 608 (888)
.|.++.|..-|+.+.+.++. +|...+|.+-+....+ .......+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 77777777777766543221 1111111111110000 011223333445566777777776666
Q ss_pred HHhCCCCCcchhhhhccchhhcCCHHHHHHHHH---hCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 002718 609 IKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFE---KSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHAT 685 (888)
Q Consensus 609 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 685 (888)
++-.+ -|...+..-.++|...|.+..|+.-++ ++...|....--+-..+...|+.+.++...++-.. +.||...
T Consensus 182 lEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 66432 456666677778888888888865444 34456666666677778888998988888888887 7887742
Q ss_pred -HH---HH---------HHHHHhcCCHHHHHHHHHHhHhccCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 002718 686 -FI---SV---------LRACAHIGLVEKGLHYFNVMLSDYSLHPQL-----EHYSCMVDILGRSGQLNKALKLIQEM-P 746 (888)
Q Consensus 686 -~~---~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~l~~~g~~~~A~~~~~~~-~ 746 (888)
|. .| +......+.|.++++..+...+. .|.. ..+..+-..+...|++.+|++...+. .
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 21 11 11223344555555555554421 2321 12233334445556666666665554 4
Q ss_pred CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 747 FEAD-DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 747 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
+.|| ..++.--..+|....+++.|+.-++++.+.+|+|..+
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 4453 4456556666666666666666666666666655443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.75 E-value=6.7e-06 Score=89.72 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSIC 761 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 761 (888)
++..+...|.+.|++++|++++++.+ ...|+ ++.|..-+..|-+.|++++|.+.++.. .+.+ |-.+-+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 44555666777777888877777777 34565 456777777777778888777777766 3443 444555555566
Q ss_pred HHhCCHHHHHHHHHHHHhcCC--CC-------cchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 762 KIHGNVEVAEEAASSLLQLDP--QD-------SSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 762 ~~~g~~~~a~~~~~~~~~~~p--~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
.+.|+++.|+..+...-..+- .. .....--|.+|.+.|++..|++-+..+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677777777777777655442 11 112345677777888887777655544
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=0.0004 Score=77.54 Aligned_cols=355 Identities=12% Similarity=-0.038 Sum_probs=167.8
Q ss_pred eeeHHHHHHHHHh----C----CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCchh
Q 002718 446 AVSWNAIIAVQAQ----N----GNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLF 517 (888)
Q Consensus 446 ~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 517 (888)
..+|..++..|.+ . .+...|+..+.+.++. ..+...+-..+......|++.-+..-|-.-+... +....
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchh
Confidence 5566666554443 1 2234677888877763 4444444445555555555555544443333332 45566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHcCCChHHHHHHHHHH--HH--CCCCCCHHHHHHHHH
Q 002718 518 VGSALIDMYCKCGMVEEAKKILKRTEER---DVVSWNAIISGFSGAKRSEDAHKFFSYM--LK--MGVKPDDFTYATLLD 590 (888)
Q Consensus 518 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~--~g~~p~~~t~~~ll~ 590 (888)
+|..+.-.+.+..+++-|...|.....- |.+.|-.........|+.-+++.+|..- .. .|-.|+..-+.....
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 7777777788888999999999887753 5567776666667778888888888762 11 233444433333333
Q ss_pred HhcCcccHHHHHHHHHHHH------Hh---CCCCCcchhhhhccchhhcCCHHHHHHHHHhCC-----CCCHHHHHHH--
Q 002718 591 TCGNLATVGLGMQLHAQII------KQ---EMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP-----KRDFVTWNAM-- 654 (888)
Q Consensus 591 a~~~~~~~~~a~~~~~~~~------~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-- 654 (888)
-....|+.+.-....+.+- +. +.+.+...|.+.....-..+...+|.+...+.. +-+...||..
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~ 1011 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKP 1011 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3334444333222221111 11 222333444444444444444444444443322 2233444432
Q ss_pred --HHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhH-HHHHHHH
Q 002718 655 --ICGYAHHGLGEEALKVFENMELENVKPNH---ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEH-YSCMVDI 728 (888)
Q Consensus 655 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~ 728 (888)
.+.++..|.++.|..-+ +..|-. ..-..-+. ..-.|+++++.+.|++......-..+..+ ...+.-.
T Consensus 1012 ~~gRL~lslgefe~A~~a~------~~~~~evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~ 1084 (1238)
T KOG1127|consen 1012 DAGRLELSLGEFESAKKAS------WKEWMEVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVC 1084 (1238)
T ss_pred hhhhhhhhhcchhhHhhhh------cccchhHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHH
Confidence 22233334444332222 222211 11111111 12345666666666666533222222222 2333444
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH---HhcCCCCcchHHHHHHHHHHcCCchH
Q 002718 729 LGRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSL---LQLDPQDSSTYILLSNIYADAGMWDK 803 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~p~~~~~~~~l~~~~~~~g~~~~ 803 (888)
.+.++.-+.|..++-+. .-+|+....-.|...+.--.+-.....+.+++ +..+--+-..-.+..-+|..+||-.-
T Consensus 1085 ~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~ 1164 (1238)
T KOG1127|consen 1085 MGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVA 1164 (1238)
T ss_pred HhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHH
Confidence 45555556665554443 23444444444444333222222222222222 22221133334455556666666665
Q ss_pred HHHHHHH
Q 002718 804 LSYTRRL 810 (888)
Q Consensus 804 a~~~~~~ 810 (888)
..+++.+
T Consensus 1165 vk~~~qr 1171 (1238)
T KOG1127|consen 1165 VKKQIQR 1171 (1238)
T ss_pred HHHHHHH
Confidence 5555543
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.73 E-value=8e-06 Score=89.11 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=60.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhh
Q 002718 654 MICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGR 731 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~ 731 (888)
+...|...|++++|++..++.++ ..|+. ..|..-...+.|.|++++|.+.++... .+.+ |...-+-.+..+.|
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHH
Confidence 34445555666666666666655 34533 355555556666666666666665554 2222 22223334455556
Q ss_pred cCCHHHHHHHHHhCC---CCCC------HHHHHH--HHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 732 SGQLNKALKLIQEMP---FEAD------DVIWRT--LLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 732 ~g~~~~A~~~~~~~~---~~p~------~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
+|++++|.+.+.... ..|- ..+|-- ...+|.+.|++..|.+-+..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 666666665555441 1111 112322 233455556666666555555443
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=1e-06 Score=89.38 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=80.8
Q ss_pred chhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--h--cCCHHH
Q 002718 626 MYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACA--H--IGLVEK 701 (888)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~--~g~~~~ 701 (888)
+|...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++. . .+.+.+
T Consensus 111 i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHH
Confidence 345566666666665554 3445555566777777777777777777776 444432 222333222 1 224667
Q ss_pred HHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCH-HHHHHHHHHHH
Q 002718 702 GLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNV-EVAEEAASSLL 778 (888)
Q Consensus 702 a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 778 (888)
|.-+|+++...+ .+++...+.+.-+....|++++|.+++++. ...| |+.++-.++-.+...|+. +.+.+...++.
T Consensus 186 A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777777765433 245555566666666666666666665543 2223 344444454444444544 45555555555
Q ss_pred hcCCCC
Q 002718 779 QLDPQD 784 (888)
Q Consensus 779 ~~~p~~ 784 (888)
...|++
T Consensus 264 ~~~p~h 269 (290)
T PF04733_consen 264 QSNPNH 269 (290)
T ss_dssp HHTTTS
T ss_pred HhCCCC
Confidence 555543
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.72 E-value=1e-06 Score=88.31 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 756 TLLSICKIHGNVEVAEEAASSLLQLDPQD---SSTYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 756 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
.+...+...|+++.|...++++++..|++ +..+..++.+|...|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34556778899999999999999998765 4789999999999999999999998887643
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.69 E-value=5e-07 Score=91.61 Aligned_cols=149 Identities=17% Similarity=0.132 Sum_probs=113.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhH---HHHHHHHHhhc
Q 002718 656 CGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEH---YSCMVDILGRS 732 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~l~~~ 732 (888)
..+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.+....-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCc
Confidence 4566779999999988642 345666777889999999999999999997 34444332 22233333333
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCc-hHHHHHHH
Q 002718 733 GQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMW-DKLSYTRR 809 (888)
Q Consensus 733 g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 809 (888)
+.+.+|.-+|+++ ...+++.+++.+..++...|++++|+..++++++.+|+++.+...++-+....|+. +.+.+...
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 4799999999998 45678889999999999999999999999999999999999999999999999999 45677888
Q ss_pred HHHh
Q 002718 810 LMRQ 813 (888)
Q Consensus 810 ~m~~ 813 (888)
.++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7765
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.65 E-value=2.3e-05 Score=84.30 Aligned_cols=254 Identities=9% Similarity=-0.034 Sum_probs=153.4
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCH-HHHHH---HHHHhcCcccHHHHHHHHHHHHHhCCCCC-cchhhhhccchhhc
Q 002718 556 GFSGAKRSEDAHKFFSYMLKMGVKPDD-FTYAT---LLDTCGNLATVGLGMQLHAQIIKQEMQSD-VYISSTLVDMYSKC 630 (888)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 630 (888)
.+...|++++|.+++++..+. .|+. ..+.. ........+..+.+.+.+.. .....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc
Confidence 456677788888887777664 3433 23321 11111223444444444433 1111222 23334555677888
Q ss_pred CCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHH
Q 002718 631 GNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENV-KPNH--ATFISVLRACAHIGLVEKGLH 704 (888)
Q Consensus 631 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~ 704 (888)
|++++|.+.+++.. +.+...+..+...+...|++++|...+++.....- .|+. ..|..+...+...|++++|+.
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 88999988888765 44567788888889999999999999998877421 1232 245567788889999999999
Q ss_pred HHHHhHhccCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHhC-CCCC---CHHHHHHHHHHHHHhCCHHHHHHHH
Q 002718 705 YFNVMLSDYSLHPQLEHY-S--CMVDILGRSGQLNKALKL---IQEM-PFEA---DDVIWRTLLSICKIHGNVEVAEEAA 774 (888)
Q Consensus 705 ~~~~m~~~~~~~p~~~~~-~--~l~~~l~~~g~~~~A~~~---~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~ 774 (888)
++++........+..... . .+...+...|..+.+.++ .... +..| ..........++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999875322211222111 1 333344445543333332 1111 1111 1222334555677788999999999
Q ss_pred HHHHhcCC---------CCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 775 SSLLQLDP---------QDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 775 ~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+.+....- .........+.++...|++++|.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88766321 1456778999999999999999888776554
No 100
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.60 E-value=1.2e-06 Score=79.12 Aligned_cols=122 Identities=13% Similarity=0.084 Sum_probs=93.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 002718 669 KVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM-P 746 (888)
Q Consensus 669 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~ 746 (888)
.+|++..+ +.|+. +..+..++.+.|++++|...|+... .+.| +...|..+..++.+.|++++|...+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 56654 4456677778888888888888877 3344 4556777888888888888888888877 3
Q ss_pred CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 002718 747 FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYAD 797 (888)
Q Consensus 747 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 797 (888)
..| ++..|..+..++...|+.++|+..++++++..|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 444 677888888888889999999999999999999999999888877553
No 101
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=6.3e-08 Score=61.72 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=29.5
Q ss_pred hCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCC
Q 002718 75 SGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMP 108 (888)
Q Consensus 75 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 108 (888)
.|+.||.++||.||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999998884
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=6e-05 Score=72.09 Aligned_cols=373 Identities=10% Similarity=0.054 Sum_probs=189.4
Q ss_pred hhccCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHH-HHHHhccCChhHH
Q 002718 425 YGKCQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSV-LKACAGQQALNYG 500 (888)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a 500 (888)
..+..++.+|++++..-.++ +....+.+..+|-...++..|-+.+.++-.. .|...-|... .+.+.+.+.+..|
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHH
Confidence 33444455555555444433 2233444555555555566666666555442 2333322211 1223344445555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHH--HHHhcCCHHHHHHHHHhcCC-CCcccHHHHHHHHHcCCChHHHHHHHHHHHHC-
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALID--MYCKCGMVEEAKKILKRTEE-RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKM- 576 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 576 (888)
+.+...|... ++...-..-+. ..-..+++..+..+.++.+. .+..+.+.......+.|++++|++-|+...+-
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 5554444321 11111111111 12234566666666666653 34444444444455667777777777766653
Q ss_pred CCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCc----------------------------chhhhhccchh
Q 002718 577 GVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDV----------------------------YISSTLVDMYS 628 (888)
Q Consensus 577 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------------~~~~~li~~~~ 628 (888)
|..| ...|+..+..+ +.++.+.|.....+++.+|+...+ ..+|.-...+.
T Consensus 175 Gyqp-llAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIey 252 (459)
T KOG4340|consen 175 GYQP-LLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEY 252 (459)
T ss_pred CCCc-hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhh
Confidence 3333 34555555433 345666666666666665543211 01222233456
Q ss_pred hcCCHHHHHHHHHhCCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 002718 629 KCGNVQDSRIMFEKSPKR-----DFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKG 702 (888)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 702 (888)
+.|+.+.|.+.+-.|+++ |++|...+.-.- ..|++.+..+-+.-+.+ +.| -..||..++-.|++..-++-|
T Consensus 253 q~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 253 QLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHH
Confidence 788999999999998854 667776654322 23445555555555665 567 567999999999999988888
Q ss_pred HHHHHHhHhccCCCCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHhCC----HHHHHHHHHH
Q 002718 703 LHYFNVMLSDYSLHPQLEHYSCMVDILG-RSGQLNKALKLIQEMPFEADDVIWRTLLSIC-KIHGN----VEVAEEAASS 776 (888)
Q Consensus 703 ~~~~~~m~~~~~~~p~~~~~~~l~~~l~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~-~~~g~----~~~a~~~~~~ 776 (888)
-.++-+-....---.+...|+ |++.+. -.-..++|.+-++.+.-.--...-...+..- .++.+ +..+.+-++.
T Consensus 330 ADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~ 408 (459)
T KOG4340|consen 330 ADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDE 408 (459)
T ss_pred HHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 877743210000000111222 334443 3345666666555431000000111111111 11222 2233444455
Q ss_pred HHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 777 LLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 777 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
.+++. -......+++|....++.-+.++|+.-
T Consensus 409 ~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 409 TLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 55552 234567788899999999998887643
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.56 E-value=0.0052 Score=75.42 Aligned_cols=408 Identities=10% Similarity=-0.034 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHcCC--CC-C----chhHhhHHHHhhhhh----chhhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCC
Q 002718 362 VEALQLFRLLQKSGL--GF-N----EITLSGAFSACAVIA----GYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQD 430 (888)
Q Consensus 362 ~~A~~~~~~m~~~g~--~p-~----~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 430 (888)
+.+.++++.+.+.|+ .+ + -+.|..++..+.... +.+...++|. .....+...|+
T Consensus 292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~---------------raa~~~~~~g~ 356 (903)
T PRK04841 292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHR---------------AAAEAWLAQGF 356 (903)
T ss_pred CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHH---------------HHHHHHHHCCC
Confidence 345667777777664 11 1 244566665544322 2223333333 23344555666
Q ss_pred hHHHHHHHhhcCCCCeee--HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 002718 431 VIEACHVFDEMERRDAVS--WNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRII 508 (888)
Q Consensus 431 ~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 508 (888)
+.+|.............. ...........|+.+.+...+..+.......+..........+...|+++++...+....
T Consensus 357 ~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 357 PSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666555544332111 111122344566777666666655222111222222333334456677777777776654
Q ss_pred HhCC------CCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C--Cc----ccHHHHHHHHHcCCChHHHHHHHHH
Q 002718 509 KSGM------GSN--LFVGSALIDMYCKCGMVEEAKKILKRTEE--R--DV----VSWNAIISGFSGAKRSEDAHKFFSY 572 (888)
Q Consensus 509 ~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~g~~~~A~~~~~~ 572 (888)
+.-- .+. ......+...+...|++++|...++.... + +. .+++.+...+...|++++|...+.+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4210 011 11112233344566777777666665432 1 11 1233444455566666666666666
Q ss_pred HHHCC--C-CCC--HHHHHHHHHHhcCcccHHHHHHHHHHHHHh----CCCCCcchhhhhccchhhcCCHHHHHHHHHhC
Q 002718 573 MLKMG--V-KPD--DFTYATLLDTCGNLATVGLGMQLHAQIIKQ----EMQSDVYISSTLVDMYSKCGNVQDSRIMFEKS 643 (888)
Q Consensus 573 m~~~g--~-~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 643 (888)
..... . .+. ..++..+...+...|+++.|...+...... +.....
T Consensus 517 al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-------------------------- 570 (903)
T PRK04841 517 TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP-------------------------- 570 (903)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc--------------------------
Confidence 54311 0 011 122233333444555666655555544332 100000
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh
Q 002718 644 PKRDFVTWNAMICGYAHHGLGEEALKVFENMELEN--VKPN--HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL 719 (888)
Q Consensus 644 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 719 (888)
.....+..+...+...|++++|...+++..... ..|. ..++..+.......|+.++|...+..+..........
T Consensus 571 --~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 571 --MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred --HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 011223334444555566666666666554321 1121 1233334455556666666666666554211110000
Q ss_pred hHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------
Q 002718 720 EHY-----SCMVDILGRSGQLNKALKLIQEMPFE--ADD----VIWRTLLSICKIHGNVEVAEEAASSLLQLDP------ 782 (888)
Q Consensus 720 ~~~-----~~l~~~l~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------ 782 (888)
..+ ......+...|+.++|.+++...... ... ..+..+..++...|+.+.|...++++++...
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 000 01113334466666666666554210 111 1133444455566677777777776665421
Q ss_pred CCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 783 QDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
....++..++.+|...|+.++|...+....
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 122356666677777777777766555443
No 104
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=1.5e-05 Score=81.92 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=115.5
Q ss_pred HHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 002718 633 VQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLG--EEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYF 706 (888)
Q Consensus 633 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 706 (888)
+++++..++++. +++..+|+.....+.+.|+. ++++.+++++.+ ..| |..+|.....++.+.|+++++++.+
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455555555444 45556677655555555653 677888888888 677 6678888888888899999999999
Q ss_pred HHhHhccCCCCChhHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh----CCHHHHHHH
Q 002718 707 NVMLSDYSLHPQLEHYSCMVDILGRS---GQ----LNKALKLIQEM-PFEA-DDVIWRTLLSICKIH----GNVEVAEEA 773 (888)
Q Consensus 707 ~~m~~~~~~~p~~~~~~~l~~~l~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~ 773 (888)
+++++.. .-+...|+....++.+. |. .++++++..++ ...| |...|+.+.+.+... ++...|...
T Consensus 166 ~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 9988542 22334455544444443 22 24677777444 5566 677899999988774 345678899
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHcC
Q 002718 774 ASSLLQLDPQDSSTYILLSNIYADAG 799 (888)
Q Consensus 774 ~~~~~~~~p~~~~~~~~l~~~~~~~g 799 (888)
+.++++.+|.++.++..|+.+|....
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999998743
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=1.1e-07 Score=60.56 Aligned_cols=33 Identities=39% Similarity=0.706 Sum_probs=27.4
Q ss_pred CCCCChhhHHHHHHhhhcCCChhhHHHHhcccC
Q 002718 208 GFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMS 240 (888)
Q Consensus 208 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (888)
|+.||..+||.||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.48 E-value=1.1e-05 Score=77.25 Aligned_cols=147 Identities=11% Similarity=0.101 Sum_probs=110.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCC
Q 002718 655 ICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQ 734 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~ 734 (888)
+..|...|+++......+.+.. |. ..+...++.++++..++..... -..+.+.|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
Confidence 4567888888776544432221 21 0122356677787777777643 23456788889999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 735 LNKALKLIQEM-PFEA-DDVIWRTLLSIC-KIHGN--VEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 735 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
+++|...+++. ...| ++.++..+..++ ...|+ .+.|..+++++++.+|+++.++..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 4555 677888888764 56676 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 002718 810 LMRQNK 815 (888)
Q Consensus 810 ~m~~~~ 815 (888)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 886643
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=8e-05 Score=71.29 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=150.8
Q ss_pred hHHHHHHHhcCchhHHHHhhhhCCCC---CceehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCC-chHH-HHHHHhcc
Q 002718 116 NALIFGYAVRGEMGIARTLFEAMPER---DVISWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDN-RSFA-VALKACSI 190 (888)
Q Consensus 116 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~-~ll~~~~~ 190 (888)
++.+.-+.+..++++|++++..-.++ +....+.|.-+|.+..++..|-+.|+++... .|. ..|. --.+++-+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHH
Confidence 33344444444444444444433321 3333444455555555555555555555422 222 1111 11222333
Q ss_pred cCCchhHhHHHHHHHHhCCCCChhhHHHHH--HhhhcCCChhhHHHHhcccCC-CChhHHHHHHHHHHhcCChhHHHHHH
Q 002718 191 LEDGDFGVQLHCFAMKMGFDKDVVTGSALV--DMYAKCKKLDDSVSLFNRMSE-RNWVSWNTVIAGCVQNYKFIEALKLF 267 (888)
Q Consensus 191 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 267 (888)
.+.+..|..+...|.+. ++...-..-+ ......+++..++.+.++.+. .+..+.+...-...+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 33444444444333221 1111111111 122345777788888887773 55555555555566788888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhCCCCchhH----HhHHHHHhhcCCChh-HHHHHhccCCC
Q 002718 268 KIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHAHALKTDFEMDVIV----GTATLDMYAKCNNMS-DAQKVFNSLPN 342 (888)
Q Consensus 268 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~~~~ 342 (888)
....+-|--.....|+..+. ..+.++...|.....+++..|+...+.. .+..++.- ..|+.. -+...+
T Consensus 168 qaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt~~lh~Sal----- 240 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNTLVLHQSAL----- 240 (459)
T ss_pred HHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccchHHHHHHHH-----
Confidence 88776543334456665554 3466777888888888887775322111 01001000 000000 000000
Q ss_pred CCCccHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCchhhhHHH
Q 002718 343 CGLQSYNAIIVGYAQNGQGVEALQLFRLLQKS-GLGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSI 421 (888)
Q Consensus 343 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 421 (888)
+..+|.-...+.+.|+++.|.+.+.+|..+ .-..|++|...+.-. -..+++..+.+-+..+...+. ....++..+
T Consensus 241 --~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 241 --VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred --HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 012333333445667777777777776433 234555665443211 112334444444555554433 334567777
Q ss_pred HHhhhccCChHHHHHHHhhcC
Q 002718 422 LDMYGKCQDVIEACHVFDEME 442 (888)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~~~ 442 (888)
+-.|+|..-++.|-.++.+-.
T Consensus 317 LllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCc
Confidence 778888888887777776544
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.43 E-value=0.00019 Score=77.13 Aligned_cols=263 Identities=12% Similarity=0.053 Sum_probs=166.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHH-HHHhcCcccHHHHHHHHHHHHHhCCCCCcchhh---hh
Q 002718 549 SWNAIISGFSGAKRSEDAHKFFSYMLKMG-VKPDDFTYATL-LDTCGNLATVGLGMQLHAQIIKQEMQSDVYISS---TL 623 (888)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l 623 (888)
.|..+...+...|+.+++.+.+.+..+.. ..++......+ ...+...|+++.+..++..+.+... .+...+. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhHHH
Confidence 45555556666677777666665554422 12333222222 2234567899999999999988743 2333333 12
Q ss_pred ccchhhcCCHHHHHHHHHhCCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 002718 624 VDMYSKCGNVQDSRIMFEKSPK--R-DFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLV 699 (888)
Q Consensus 624 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 699 (888)
.......+..+.+.+.++...+ | ....+..+...+...|++++|.+.+++..+ ..| +...+..+..++...|++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCH
Confidence 2222335666667776665332 2 234555666788999999999999999999 567 456788888999999999
Q ss_pred HHHHHHHHHhHhccCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHH--H--HHHHHHHHhCCHHHH
Q 002718 700 EKGLHYFNVMLSDYSLHPQL--EHYSCMVDILGRSGQLNKALKLIQEM-PFEA--DDVIW--R--TLLSICKIHGNVEVA 770 (888)
Q Consensus 700 ~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p--~~~~~--~--~ll~~~~~~g~~~~a 770 (888)
++|+.++++........|.. ..|..+...+...|++++|.+.+++. ...| ..... + .++.-....|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 99999999987543323333 24567889999999999999999986 2233 22211 1 333344455654444
Q ss_pred HHH---HHHHHhcCCC--CcchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 771 EEA---ASSLLQLDPQ--DSSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 771 ~~~---~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
.+. ........|. ....-...+.++...|++++|....+.++..
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 433 2222111122 2223346788889999999999999888653
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00011 Score=76.56 Aligned_cols=175 Identities=15% Similarity=0.092 Sum_probs=115.3
Q ss_pred hccchhhcCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 002718 623 LVDMYSKCGNVQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA-TFISVLRACAHIGLV 699 (888)
Q Consensus 623 li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 699 (888)
+...|.+.++.+.|...|.+.. .++.. ...+....+++++..+...- +.|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 4456777778888877777644 11211 12233445666666555544 556442 233336677888888
Q ss_pred HHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002718 700 EKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEADD-VIWRTLLSICKIHGNVEVAEEAASSL 777 (888)
Q Consensus 700 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 777 (888)
..|+..|.+++... +-|...|+.-.-+|.+.|.+.+|++-.+.. .+.|+. ..|.--+.++..-.+++.|...|++.
T Consensus 375 ~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887432 334557888888888888888888766655 344543 23444445555667999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHHcCCchHHHHHH
Q 002718 778 LQLDPQDSSTYILLSNIYADAGMWDKLSYTR 808 (888)
Q Consensus 778 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 808 (888)
++.+|++......+.+++..+...+...++.
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999999999888888888754444444443
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=6.4e-06 Score=72.75 Aligned_cols=96 Identities=14% Similarity=0.045 Sum_probs=84.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 002718 718 QLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIY 795 (888)
Q Consensus 718 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 795 (888)
+.+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|+++.|+..+.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455566777888999999999999987 4666 5678999999999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHh
Q 002718 796 ADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 796 ~~~g~~~~a~~~~~~m~~ 813 (888)
...|+.++|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999886654
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=4.3e-06 Score=75.59 Aligned_cols=106 Identities=10% Similarity=-0.046 Sum_probs=91.2
Q ss_pred HHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 002718 704 HYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLD 781 (888)
Q Consensus 704 ~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 781 (888)
.+|++.. .+.|+. +..+...+...|++++|.+.++.. ...| +...|..+..+|...|+++.|...++++++++
T Consensus 14 ~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4555555 344553 556788999999999999999987 4555 77899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 782 PQDSSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 782 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
|+++.++..++.++...|++++|...+......
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988876553
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.38 E-value=2.7e-05 Score=89.38 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=158.1
Q ss_pred CcchhhhhccchhhcCCHHHHHHHHHhCCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002718 616 DVYISSTLVDMYSKCGNVQDSRIMFEKSPKR--------DFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFI 687 (888)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 687 (888)
+...|-..|......+++++|++++++..+. -...|.++++.....|.-+...++|+++.+ +.--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHHHH
Confidence 3455666666677788888888888876621 235788888888888988889999999887 333346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHH
Q 002718 688 SVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA---DDVIWRTLLSICKI 763 (888)
Q Consensus 688 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~ 763 (888)
.|...|.+.+.+++|.++++.|.++++ .....|...++.+.+..+-++|..+++++ ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999998887 55667889999999999999999998876 3333 33455555666678
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 764 HGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 764 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
+||.++|+.+|+.++.-.|.....|..+.+.=.+.|..+.+..+|++.-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999999999999999998876554
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.37 E-value=1.7e-05 Score=75.88 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHH-hhcCC--H
Q 002718 661 HGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDIL-GRSGQ--L 735 (888)
Q Consensus 661 ~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l-~~~g~--~ 735 (888)
.++.++++..+++..+ ..| |...|..+...|...|++++|...|++..+ +.| +...+..+..++ .+.|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 5667788888888777 566 667888888899999999999999998873 445 455677777764 67777 5
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 002718 736 NKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILL 791 (888)
Q Consensus 736 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 791 (888)
++|.+++++. ...| ++..+..+...+...|+++.|+..++++++++|.+..-+-.+
T Consensus 127 ~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 127 PQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8999999887 4555 667888888899999999999999999999998766655433
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=9.5e-05 Score=79.85 Aligned_cols=217 Identities=14% Similarity=0.200 Sum_probs=178.4
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002718 511 GMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLD 590 (888)
Q Consensus 511 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 590 (888)
+++|-...-..+.+.+.+.|-..+|..+|++. ..|...|.+|+..|+..+|..+..+-.+ -+||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45677777788999999999999999999986 4688899999999999999999988887 3899999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHH
Q 002718 591 TCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEA 667 (888)
Q Consensus 591 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 667 (888)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-. +--..+|-.+..+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 988888899999998876543 11222233344789999999998654 34557899999999999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 668 LKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 668 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
.+.|..-.. ..||. ..|+.+-.+|.+.|+-.+|...+++..+ +. .-+...|...+-...+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988 78966 6899999999999999999999999883 34 333445666667778999999999999877
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=3.6e-05 Score=73.05 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 002718 689 VLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGN 766 (888)
Q Consensus 689 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 766 (888)
++....+.|++.+|+..|.+... .-.+|.+.|+.+.-.|.+.|++++|..-|.+. .+.| ++.+.+.+.-.+...||
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444444444444444444431 22233444444444444444444444444333 2222 33444444444444445
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHH
Q 002718 767 VEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSY 806 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 806 (888)
.+.|+..+..+....+.|...-..|+-+...+|+.++|.+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 5555554444444444444444444444444455444443
No 116
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=5e-05 Score=78.22 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=134.8
Q ss_pred hcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH--HH
Q 002718 629 KCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHG-LGEEALKVFENMELENVKP-NHATFISVLRACAHIGLV--EK 701 (888)
Q Consensus 629 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~--~~ 701 (888)
+.++.++|..+.+++. +.+..+|+.....+...| ++++++..++++.+ ..| +..+|......+.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCchhhHH
Confidence 4456777877777666 345567877777777777 68999999999998 567 446777666666677763 67
Q ss_pred HHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHh---CC----HHHHH
Q 002718 702 GLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIH---GN----VEVAE 771 (888)
Q Consensus 702 a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~~~a~ 771 (888)
++.+++++.+ +.| +...|.....++.+.|++++|++.++++ ...| |..+|+....++... |. .+...
T Consensus 127 el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 8899988883 345 4567888889999999999999999988 4444 677898888776554 22 35678
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHc----CCchHHHHHHHHH
Q 002718 772 EAASSLLQLDPQDSSTYILLSNIYADA----GMWDKLSYTRRLM 811 (888)
Q Consensus 772 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m 811 (888)
....++++.+|+|.+++..++.++... ++..+|.+.....
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 888899999999999999999999883 4456676665543
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00011 Score=84.50 Aligned_cols=225 Identities=12% Similarity=0.198 Sum_probs=172.3
Q ss_pred CCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCCC---CcchhhhhccchhhcCCHHHHHHHHHhCCCC-C-HHHHH
Q 002718 579 KPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQ-EMQS---DVYISSTLVDMYSKCGNVQDSRIMFEKSPKR-D-FVTWN 652 (888)
Q Consensus 579 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~ 652 (888)
+.+...|...+.-..+.++.+.|+++.+++++. ++.- -..+|.+++++-..-|.-+...++|+++.+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 334567888888888899999999999888875 2221 2456777777777778888889999988743 3 35788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh---HHHHHHHHH
Q 002718 653 AMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE---HYSCMVDIL 729 (888)
Q Consensus 653 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~l~~~l 729 (888)
.|...|.+.+..++|.++|+.|.+. +.-....|...+..+.+..+-+.|..+++++.+ .-|..+ ...-.+.+-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHH
Confidence 8999999999999999999999986 454567899999999999999999999999884 345433 456667788
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHc-CCchHH
Q 002718 730 GRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLD--PQDSSTYILLSNIYADA-GMWDKL 804 (888)
Q Consensus 730 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~-g~~~~a 804 (888)
.+.|+.+.+..+|+.. ..+....+|+.++..-.+||+.+.++.+|++++++. |.....++-.=--|.+. |+-+.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8999999999999987 345578899999999999999999999999999985 44444433332233333 444444
Q ss_pred HHH
Q 002718 805 SYT 807 (888)
Q Consensus 805 ~~~ 807 (888)
..+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 443
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=8.6e-05 Score=76.76 Aligned_cols=143 Identities=17% Similarity=0.118 Sum_probs=98.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKPNHA-TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDI 728 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~ 728 (888)
+-...-.+...|+.++|+..++.++. -.||.. ........+...++.++|.+.++++.. ..|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 33333455566778888888888777 467444 444455677788888888888888773 4455 3344566777
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHH
Q 002718 729 LGRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSY 806 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 806 (888)
|.+.|++.+|+..++.. ..+.|+..|..|..+|...|+..++..+. +..|+-.|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 88888888888888776 34457778888888888888776665543 345667788888887
Q ss_pred HHHHHHhCC
Q 002718 807 TRRLMRQNK 815 (888)
Q Consensus 807 ~~~~m~~~~ 815 (888)
..+..+++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 777766643
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.26 E-value=3.2e-05 Score=77.50 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=102.1
Q ss_pred hhhccchhhcCCHHHHHHHHHhCC--CC-CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHH
Q 002718 621 STLVDMYSKCGNVQDSRIMFEKSP--KR-DF---VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA----TFISVL 690 (888)
Q Consensus 621 ~~li~~~~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll 690 (888)
..+...|.+.|++++|...|+++. .| +. ..|..+..++...|++++|+..++++.+ ..|+.. ++..+.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHHHHHH
Confidence 344445555666666666665443 11 21 3455666667777777777777777766 344221 344444
Q ss_pred HHHHhc--------CCHHHHHHHHHHhHhccCCCCChh---------------HHHHHHHHHhhcCCHHHHHHHHHhC--
Q 002718 691 RACAHI--------GLVEKGLHYFNVMLSDYSLHPQLE---------------HYSCMVDILGRSGQLNKALKLIQEM-- 745 (888)
Q Consensus 691 ~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~---------------~~~~l~~~l~~~g~~~~A~~~~~~~-- 745 (888)
.++.+. |+.++|.+.|+.+...+.-.+... ....+.+.+.+.|++++|...+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 445443 566777777777664432222111 1124667788999999999988876
Q ss_pred --CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 746 --PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 746 --~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
+-.| .+..|..+..++...|+.+.|...++.+....|+
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2233 3568889999999999999999999888777663
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=9.7e-05 Score=77.72 Aligned_cols=211 Identities=15% Similarity=0.152 Sum_probs=128.4
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHcCCChHHHHHHHH
Q 002718 495 QALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE---RDVVSWNAIISGFSGAKRSEDAHKFFS 571 (888)
Q Consensus 495 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 571 (888)
|++..|.-.|+..++.. |.+...|..|.......++-..|+..+.+..+ .|..+..+|.-.|...|.-.+|++.++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444444433 33444455555555555555555555544443 233444555555666666666666666
Q ss_pred HHHHCCCC--------CCHHHHHHHHHHhcCcccHHHHHHHHHHHH-HhCCCCCcchhhhhccchhhcCCHHHHHHHHHh
Q 002718 572 YMLKMGVK--------PDDFTYATLLDTCGNLATVGLGMQLHAQII-KQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEK 642 (888)
Q Consensus 572 ~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 642 (888)
.-+....+ ++...-.. +.......+....++|-.+. ..+..+|+.+...|.-.|--.|+++.|...|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 55432100 00000000 11222223334444444443 345557888888888888889999999999987
Q ss_pred CC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 643 SP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA-TFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 643 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
.. +.|...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-.++
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 66 44678899999999998899999999999988 788764 55667778889999999988887665
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=5.5e-05 Score=85.99 Aligned_cols=138 Identities=12% Similarity=0.052 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHH
Q 002718 645 KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHY 722 (888)
Q Consensus 645 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~ 722 (888)
..++..+-.|.....+.|+.++|..+++...+ +.||. .....+..++.+.+++++|+..+++.. ...|+ ..+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~ 157 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREI 157 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHH
Confidence 34577888888889999999999999999998 78965 577788889999999999999999887 34454 5567
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 723 SCMVDILGRSGQLNKALKLIQEMP-FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 723 ~~l~~~l~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
..+..++.+.|++++|.++|++.- -.| ++.+|-++..++...|+.+.|..+|+++++...+-...
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 888889999999999999999883 334 47789999999999999999999999999886543333
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.013 Score=65.51 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=86.4
Q ss_pred HHHHHHHHhcCcccHH---HHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHH--HHHH-HHHH
Q 002718 584 TYATLLDTCGNLATVG---LGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFV--TWNA-MICG 657 (888)
Q Consensus 584 t~~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~-li~~ 657 (888)
+.+.++..|.+.++.. +|+-+++...... +.+..+--.||..|+-.|-...|.++|+.+.-+++. |..- +..-
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~ 516 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRR 516 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHH
Confidence 3456667777766655 3333333333322 133444456788888888888888888887754443 1211 2344
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHH---HHHHHhHhccCCCCChhHHHHHHHHHhhc
Q 002718 658 YAHHGLGEEALKVFENMELENVKPNH--ATFISVLRACAHIGLVEKGL---HYFNVMLSDYSLHPQLEHYSCMVDILGRS 732 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~---~~~~~m~~~~~~~p~~~~~~~l~~~l~~~ 732 (888)
+...|++..+...+++... +--+. .+-..+..|| +.|.+.+-. ..=+++... --.-...+-+..++.++..
T Consensus 517 ~~t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHhcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 5556777777666665544 11111 1222333344 334444333 222333211 0011122335667788888
Q ss_pred CCHHHHHHHHHhCCCCC
Q 002718 733 GQLNKALKLIQEMPFEA 749 (888)
Q Consensus 733 g~~~~A~~~~~~~~~~p 749 (888)
++.++-...+..|.++|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 99988888888886554
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0026 Score=62.63 Aligned_cols=302 Identities=10% Similarity=0.063 Sum_probs=167.9
Q ss_pred HHHhhhccCChHHHHHHHhhcCCCCeeeHHHHH---HHHHhCCChhHHHHHHHHHHHcCCCCCcchHH-HHHHHHhccCC
Q 002718 421 ILDMYGKCQDVIEACHVFDEMERRDAVSWNAII---AVQAQNGNEEETLFYFISMLHAIMEPDEFTYG-SVLKACAGQQA 496 (888)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~ 496 (888)
|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.-|...++ ++||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 334444556777777777777766666666654 467777888888887777776 467654321 11233567888
Q ss_pred hhHHHHHHHHHHHhCCCCch--hHH------------HHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHc
Q 002718 497 LNYGMQIHSRIIKSGMGSNL--FVG------------SALIDMYCKCGMVEEAKKILKRTEE---RDVVSWNAIISGFSG 559 (888)
Q Consensus 497 ~~~a~~~~~~~~~~g~~~~~--~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 559 (888)
++.|..-|+.+++.....+. ..+ ...+..+...|+...|......+.+ .|...+..-..+|..
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence 88888888888776421111 111 1112223334455555555444432 233344444455555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHH
Q 002718 560 AKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIM 639 (888)
Q Consensus 560 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 639 (888)
.|.+..|+.-++...+.. .-+..++--+-..+-..|+.+.......+.++.+ ||-... |.--..+.+..+.
T Consensus 202 ~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~C------f~~YKklkKv~K~ 272 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLC------FPFYKKLKKVVKS 272 (504)
T ss_pred cCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhH------HHHHHHHHHHHHH
Confidence 555555554444433321 1122222233333334444444444433333321 221110 0000011111111
Q ss_pred HHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HH---HHHHHHHHHHhcCCHHHHHHHHHHhHhccC
Q 002718 640 FEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPN--HA---TFISVLRACAHIGLVEKGLHYFNVMLSDYS 714 (888)
Q Consensus 640 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 714 (888)
++. +......++|.++++-.+...+ ..|. .+ .+..+-.++...|++.+|++...+++ .
T Consensus 273 les------------~e~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~ 335 (504)
T KOG0624|consen 273 LES------------AEQAIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---D 335 (504)
T ss_pred HHH------------HHHHHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---h
Confidence 111 1234566788888888888877 4554 23 34455567788899999999999988 5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 002718 715 LHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD 750 (888)
Q Consensus 715 ~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~ 750 (888)
+.|+ +.++.--.++|.-...+|+|+.-+++. ...++
T Consensus 336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 6776 778888888999899999999999887 34443
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.23 E-value=0.028 Score=68.97 Aligned_cols=222 Identities=9% Similarity=0.036 Sum_probs=109.4
Q ss_pred HHhccCChhHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC----cccHHHH
Q 002718 490 ACAGQQALNYGMQIHSRIIKS----GMG-SNLFVGSALIDMYCKCGMVEEAKKILKRTEE-------RD----VVSWNAI 553 (888)
Q Consensus 490 ~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l 553 (888)
.+...|+++.|...+...... |-. ........+...+...|++++|...+++... ++ ...+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 344455555555555544321 100 0112334444555566666666655544321 00 0112233
Q ss_pred HHHHHcCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCC-cchh-----hhh
Q 002718 554 ISGFSGAKRSEDAHKFFSYMLKM--GVKPD--DFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSD-VYIS-----STL 623 (888)
Q Consensus 554 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l 623 (888)
...+...|++++|...+.+.... ...+. ...+..+.......|+.+.|.+.+........... ...+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 34455556777766666665432 11121 12233333444556677777666666544211100 0000 011
Q ss_pred ccchhhcCCHHHHHHHHHhCCCCC---H----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHH
Q 002718 624 VDMYSKCGNVQDSRIMFEKSPKRD---F----VTWNAMICGYAHHGLGEEALKVFENMELE----NVKPNH-ATFISVLR 691 (888)
Q Consensus 624 i~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~ 691 (888)
+..+...|+.+.|...+.....+. . ..+..+..++...|++++|...+++.... |..++. .+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 123344667777776665544221 0 11344566677778888888777776542 222222 34555666
Q ss_pred HHHhcCCHHHHHHHHHHhHh
Q 002718 692 ACAHIGLVEKGLHYFNVMLS 711 (888)
Q Consensus 692 a~~~~g~~~~a~~~~~~m~~ 711 (888)
++...|+.++|...+.+..+
T Consensus 740 a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777888888887777764
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.22 E-value=0.00014 Score=75.34 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=130.6
Q ss_pred CHHHHHHHHHhCC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 002718 632 NVQDSRIMFEKSP------KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLH 704 (888)
Q Consensus 632 ~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~ 704 (888)
++.++.+.-+.++ .++...+...+.+.........+..++.+-.+ | -........-.+...|..++|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHHH
Confidence 4555555555554 34556666666655444333333333322222 3 22344444556678899999999
Q ss_pred HHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 705 YFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD-DVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 705 ~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
.++.+.+.. +-|........+.+.+.|+.++|.+.++++ ...|+ +..|-++..++.+.|+..+|+..++.....+|
T Consensus 328 ~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 999988542 234455677889999999999999999988 56776 67889999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 783 QDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 783 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
+|+..|.+|+.+|..+|+-.++..-+.+.-
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999999999999999999988777653
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.00011 Score=83.53 Aligned_cols=143 Identities=11% Similarity=0.035 Sum_probs=116.9
Q ss_pred CCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 002718 613 MQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFIS 688 (888)
Q Consensus 613 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 688 (888)
...++..+-.|.+.....|++++|..+++... +.+...+..++.++.+.+++++|+..+++..+ ..|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 44567788889999999999999999999876 45567888899999999999999999999999 68855 56677
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 002718 689 VLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM--PFEADDVIWRTLLS 759 (888)
Q Consensus 689 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 759 (888)
+..++.+.|++++|..+|++.... ..-+...+..+..++-+.|+.++|...|++. ...|...-|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 778999999999999999999852 2233667888999999999999999999987 23444555555443
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=2.2e-05 Score=70.74 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 002718 720 EHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYAD 797 (888)
Q Consensus 720 ~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 797 (888)
.....++..+...|++++|.+.++.. ...| ++..|..+...+...|+++.|...++++++.+|+++..+..++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34556666667777777777777665 3334 567777787888888888888888888888888888888888888888
Q ss_pred cCCchHHHHHHHHHHh
Q 002718 798 AGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 798 ~g~~~~a~~~~~~m~~ 813 (888)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888876654
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00011 Score=69.97 Aligned_cols=134 Identities=15% Similarity=0.081 Sum_probs=113.4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHH
Q 002718 679 VKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM--PFEADDVIWR 755 (888)
Q Consensus 679 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~--~~~p~~~~~~ 755 (888)
..| |... ..+-.++...|+-+....+....... ...+.+.....+....+.|++.+|...+++. +-++|...|+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~ 138 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWN 138 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhh
Confidence 467 4444 66777888899999988888876532 2234445666899999999999999999998 4566899999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 756 TLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 756 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
.+..+|-+.|+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..+.......+
T Consensus 139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 139 LLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999888776543
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=5e-05 Score=81.91 Aligned_cols=210 Identities=15% Similarity=0.122 Sum_probs=110.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcC
Q 002718 552 AIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCG 631 (888)
Q Consensus 552 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 631 (888)
.+...+...|-...|+.+|.++.. +..++..|...|...+|..+..+.++ -+|++..|..+.|......
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 345566677777777777776542 34455556666666666666665555 3466666666666666666
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 632 NVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
.+++|+++++....+--..|+. -..+.++++++.+.|+.-.+ +.| -..+|..+..+..+.++++.|.+.|....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 6666666665543221111111 12234566666666666555 445 44566666666666666666666665554
Q ss_pred hccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 711 SDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PF-EADDVIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 711 ~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
.+.|+ .+.|+.+..+|.+.|+-.+|...+++. +. ..+..+|.+..-....-|+++.|.+++.+++++
T Consensus 547 ---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 547 ---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred ---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 23332 334444444444444444444444443 11 112233444444444444444444444444443
No 130
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.018 Score=60.64 Aligned_cols=171 Identities=12% Similarity=0.179 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCC-CcchhhhhccchhhcCCHHHHHHHH
Q 002718 563 SEDAHKFFSYMLKMG-VKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQS-DVYISSTLVDMYSKCGNVQDSRIMF 640 (888)
Q Consensus 563 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~ 640 (888)
.+.....++++...- +.|+ .+|..+++.-.+..-+..|+.+|..+.+.+..+ ++.+.+++++.|| .++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 444455555555422 2333 456666776667777777888888877776665 6777777777665 45667777777
Q ss_pred HhCCC--CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhccC-
Q 002718 641 EKSPK--RD-FVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH--ATFISVLRACAHIGLVEKGLHYFNVMLSDYS- 714 (888)
Q Consensus 641 ~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 714 (888)
+...+ +| ..--...+.-+...++-..|..+|++....++.|+. ..|..++.-=+.-|+...++++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76652 23 333345566666667777777777777777666654 4677777777777777777777777665554
Q ss_pred -CCCChhHHHHHHHHHhhcCCH
Q 002718 715 -LHPQLEHYSCMVDILGRSGQL 735 (888)
Q Consensus 715 -~~p~~~~~~~l~~~l~~~g~~ 735 (888)
..|...+-..+++.|.=.+..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 444444444555555544443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.12 E-value=0.00025 Score=81.41 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDI 728 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 728 (888)
.+-.+..+|.+.|+.++|..+|+++.+ +.| |..+.+.+...++.. +.++|++++.+....
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 444455555555555555555555555 345 444555555555555 555555555554421
Q ss_pred HhhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Q 002718 729 LGRSGQLNKALKLIQEM----------------------PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 786 (888)
+...+++.++.+++.++ +..--..+|--+-..|...++++.+..+++.+++.+|+|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 22222333333333322 11222344555556777888999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchHH
Q 002718 787 TYILLSNIYADAGMWDKL 804 (888)
Q Consensus 787 ~~~~l~~~~~~~g~~~~a 804 (888)
+..-++..|. +.+.+-
T Consensus 259 a~~~l~~~y~--~kY~~~ 274 (906)
T PRK14720 259 AREELIRFYK--EKYKDH 274 (906)
T ss_pred hHHHHHHHHH--HHccCc
Confidence 9999999888 444443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00011 Score=66.23 Aligned_cols=115 Identities=8% Similarity=0.052 Sum_probs=87.5
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 002718 670 VFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PF 747 (888)
Q Consensus 670 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~ 747 (888)
.|++..+ ..|+. .....+...+...|++++|...|+.+.... ..+...+..+...+.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556665 56643 456677778888888999988888887432 235567778888888889999998888876 34
Q ss_pred CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchH
Q 002718 748 EA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 748 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
.| ++..|..+...+...|+.+.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567788888888899999999999999999999776643
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=6.9e-05 Score=78.62 Aligned_cols=123 Identities=13% Similarity=0.158 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-P-FEADDVIWRTLLSICK 762 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~ 762 (888)
...+|+..+...+++++|+.+|+++.+. .|+ ....|+..+...++-.+|.+++++. . .+.+...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666667777777777777643 244 3445666666667777777777766 2 2336667777777888
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 763 IHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 763 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
..++++.|..+++++.++.|.+..++..|+.+|...|+|++|+-..+.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999988877663
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=7.6e-06 Score=53.25 Aligned_cols=35 Identities=37% Similarity=0.503 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 002718 245 VSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQ 279 (888)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 279 (888)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=0.00042 Score=65.29 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=136.6
Q ss_pred cCCHHHHHHHHHhCC--------CCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH
Q 002718 630 CGNVQDSRIMFEKSP--------KRDFV-TWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFI-SVLRACAHIGLV 699 (888)
Q Consensus 630 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~ 699 (888)
..+.++..+++..+. .++.. .|..++-+....|+.+.|...++++... .|.+.-.. .-..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 457788888777655 23332 4455556677789999999999999885 37553222 222345678999
Q ss_pred HHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002718 700 EKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSL 777 (888)
Q Consensus 700 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 777 (888)
++|+++++...++. +-+..+|.--+-++-..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998652 334556777777777888888998887776 47789999999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHHcCCchH---HHHHHHHH
Q 002718 778 LQLDPQDSSTYILLSNIYADAGMWDK---LSYTRRLM 811 (888)
Q Consensus 778 ~~~~p~~~~~~~~l~~~~~~~g~~~~---a~~~~~~m 811 (888)
+=..|-++..+-.++.+++-.|..+. |.+.+..-
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999987554 34454433
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.95 E-value=1.5e-05 Score=51.78 Aligned_cols=34 Identities=35% Similarity=0.588 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH 683 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 683 (888)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0015 Score=62.24 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=45.9
Q ss_pred hhhcCCHHHHHHHHHhCCCCC-HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 002718 627 YSKCGNVQDSRIMFEKSPKRD-FVTWNAMICGYAH----HGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEK 701 (888)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 701 (888)
+.|..+.+-|.+.+++|.+-| ..+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....+|...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 344555555555555555332 2344444444433 23355666666666554 45566666666666666666666
Q ss_pred HHHHHHHhHhc
Q 002718 702 GLHYFNVMLSD 712 (888)
Q Consensus 702 a~~~~~~m~~~ 712 (888)
|..+++....+
T Consensus 226 Ae~lL~eaL~k 236 (299)
T KOG3081|consen 226 AESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHhc
Confidence 66666665543
No 138
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=97.88 E-value=1.1e-05 Score=68.67 Aligned_cols=45 Identities=44% Similarity=0.791 Sum_probs=38.4
Q ss_pred CeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCCCC--ccccCcchhhh
Q 002718 821 GCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEMKWRGCASD--VNYEKVEEHES 877 (888)
Q Consensus 821 ~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~--~~~~~~~~~~~ 877 (888)
||||+++ |.|++||++||+. .+..++...||.|+ .+.++++++++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~ 48 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEK 48 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhh
Confidence 7999976 9999999999998 56677788899999 77888887766
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.88 E-value=0.00033 Score=63.63 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--HHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH----ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE--HYS 723 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~ 723 (888)
.|..++..+ ..++...+.+.++++... .|+. .....+...+...|++++|...|+.+... ...|... ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 344444444 255555555555555553 2322 12333344455555555555555555532 1111111 122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002718 724 CMVDILGRSGQLNKALKLIQEMPFEA-DDVIWRTLLSICKIHGNVEVAEEAASS 776 (888)
Q Consensus 724 ~l~~~l~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 776 (888)
.|..++...|++++|+..++..+-++ .+..+.....++...|+.+.|+..|++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555555555554432111 223333333444444444444444443
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.87 E-value=2.4e-05 Score=50.40 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 002718 245 VSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGI 277 (888)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 277 (888)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0021 Score=60.74 Aligned_cols=193 Identities=13% Similarity=0.177 Sum_probs=143.5
Q ss_pred CcccHHHHHHHHHHHHHh---C-CCCCcc-hhhhhccchhhcCCHHHHHHHHHhCCC--C-CHHHHHHHHHHHHhCCCHH
Q 002718 594 NLATVGLGMQLHAQIIKQ---E-MQSDVY-ISSTLVDMYSKCGNVQDSRIMFEKSPK--R-DFVTWNAMICGYAHHGLGE 665 (888)
Q Consensus 594 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 665 (888)
...+.++..+++..++.. | ..++.. ++..++-+...+|+.+.|...++.+.. | +...-..-.--+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 345677888888777643 4 445533 344455556678999999888877552 2 2221111122355679999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002718 666 EALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQE 744 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 744 (888)
+|+++++.+.+. .| |.+++..-+-..-..|+.-+|++.+....+. +..|.+.|.-+.++|...|++++|.=-+++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999995 47 7788888787888889989999999988865 456788899999999999999999999999
Q ss_pred C-CCCC-CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCCCcchHHH
Q 002718 745 M-PFEA-DDVIWRTLLSICKIHG---NVEVAEEAASSLLQLDPQDSSTYIL 790 (888)
Q Consensus 745 ~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~ 790 (888)
+ -+.| ++..+..+...+...| |++.+.+.+++++++.|.+...+.-
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 8 3566 6667777777766655 8899999999999999965554433
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.022 Score=54.61 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=100.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHH----Hhhc
Q 002718 657 GYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDI----LGRS 732 (888)
Q Consensus 657 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~----l~~~ 732 (888)
.|...|++++|++...... . ......=...+.+..+.+-|.+.+++|.. + .+..+.+-|..+ ..-.
T Consensus 117 i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccc
Confidence 4566666666666665411 1 11111112334455566777777777762 2 222233333333 3344
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHH-HHHHH
Q 002718 733 GQLNKALKLIQEM--PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKL-SYTRR 809 (888)
Q Consensus 733 g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~ 809 (888)
+.+.+|.-+|++| +.+|++.+.+-...+|...|++++|+.+++.++..+++++.+...+.-.--..|.-+++ .+...
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 5678888888888 37888889988888999999999999999999999999999999999888899998887 55555
Q ss_pred HHHh
Q 002718 810 LMRQ 813 (888)
Q Consensus 810 ~m~~ 813 (888)
.++.
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 5543
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=0.00093 Score=60.70 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=85.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHH
Q 002718 686 FISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEMP-FEADD----VIWRTLLS 759 (888)
Q Consensus 686 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~p~~----~~~~~ll~ 759 (888)
|..++.+. ..++.+.+...++.+.++++-.|- ....-.+...+...|++++|.+.++... ..||+ ..+-.|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33333444 477888888888888876544422 2345567788888899999988888772 22443 24455666
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 002718 760 ICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
.+...|+++.|...++.+ ...+-.+..+.++|++|...|++++|...++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777888898888888663 33444677888889999999999998887764
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00027 Score=74.27 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=89.9
Q ss_pred hhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 002718 622 TLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVE 700 (888)
Q Consensus 622 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 700 (888)
.|+..+...++++.|.++|+++...++..+..++..+...++-.+|++++++... ..| +......-...|.+.++++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHH
Confidence 3444555567778888888877765555556677777777888888888888886 356 4455555566778888888
Q ss_pred HHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 002718 701 KGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEMPFEA 749 (888)
Q Consensus 701 ~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p 749 (888)
.|+++.+++. .+.|+ ..+|..|+..|.+.|++++|+..++.+|+-|
T Consensus 252 lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 252 LALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8888888887 45565 4478888888888888888888888876443
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.81 E-value=3e-05 Score=49.90 Aligned_cols=33 Identities=36% Similarity=0.601 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKP 681 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 681 (888)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 146
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00031 Score=70.84 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=114.1
Q ss_pred HHHHHHH-HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHH----
Q 002718 649 VTWNAMI-CGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY---- 722 (888)
Q Consensus 649 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---- 722 (888)
.+|..+- .++...|++++|...--.... ..+ +......-..++.-.++.+.|...|++.+ .+.|+...-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHh
Confidence 4554443 456677888888877666655 344 33333333345566778888888888776 445543321
Q ss_pred ---------HHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 723 ---------SCMVDILGRSGQLNKALKLIQEM-PFEA-----DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 723 ---------~~l~~~l~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
..=.+-..+.|++.+|.+.+.+. .+.| +.-.|.....+..+.|+..+|+.-.+.+++++|....+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 11234566889999999999877 4444 45566667777788999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 788 YILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 788 ~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
|..-++++...++|++|.+.++..-
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987766543
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.76 E-value=3e-05 Score=62.68 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHH
Q 002718 732 SGQLNKALKLIQEM-PFEA---DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 732 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 807 (888)
.|++++|+.+++++ ...| +...|-.+..++...|+++.|...+++ .+.+|.+......++.+|.+.|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666655 1222 455666677778888888888888888 777777777777888888888888888887
Q ss_pred HHH
Q 002718 808 RRL 810 (888)
Q Consensus 808 ~~~ 810 (888)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 763
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.00042 Score=60.65 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 002718 686 FISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD----DVIWRTLLS 759 (888)
Q Consensus 686 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 759 (888)
+..++..+...|++++|.+.|+.+...++-.|. ...+..++.++.+.|++++|.+.++.+ ...|+ +.++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555555555555555433211111 223344455555555555555555544 11222 344555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 760 ICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666666666666677776666665443
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.75 E-value=0.00026 Score=58.83 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=69.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcC
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAG 799 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 799 (888)
+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777777777777765 3333 44567777777778888888888888888888888888888888888888
Q ss_pred CchHHHHHHHHHHh
Q 002718 800 MWDKLSYTRRLMRQ 813 (888)
Q Consensus 800 ~~~~a~~~~~~m~~ 813 (888)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888887766543
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.75 E-value=8.5e-05 Score=57.42 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcC-CchHHHHHHHHHH
Q 002718 750 DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAG-MWDKLSYTRRLMR 812 (888)
Q Consensus 750 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~ 812 (888)
++.+|..+...+...|+++.|+..++++++++|+++..+..+|.+|...| ++++|.+.++...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 7999988877654
No 151
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.73 E-value=0.0043 Score=71.64 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=22.9
Q ss_pred CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcch
Q 002718 445 DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFT 483 (888)
Q Consensus 445 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 483 (888)
+...|..|+..+...+++++|.++.+...+ ..|+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~ 66 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSIS 66 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCccee
Confidence 445666677777777777777777765554 3444433
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0015 Score=72.25 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=71.3
Q ss_pred CCCCHHHHHHHHHHHHh--CC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 002718 644 PKRDFVTWNAMICGYAH--HG---LGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP 717 (888)
Q Consensus 644 ~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 717 (888)
.+.|...|...+.+... .+ +..+|..+|++..+ ..|+. ..+..+..++.... +..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~----------------~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRH----------------SQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHH----------------hcCC
Confidence 35677777777776443 22 26788888888888 67854 45554443332210 0111
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 002718 718 QLEHYSCMVDILGRSGQLNKALKLIQEM---P-FEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSN 793 (888)
Q Consensus 718 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 793 (888)
.. .+++..+.+..++. + ...++.++.++.-.....|+++.|...++++++++| +..+|..+|.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 01112222222221 1 222344555554444455666666666666666666 4556666666
Q ss_pred HHHHcCCchHHHHHHHHH
Q 002718 794 IYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 794 ~~~~~g~~~~a~~~~~~m 811 (888)
+|...|+.++|.+.++..
T Consensus 462 ~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 462 VYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666665555444
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.0012 Score=62.14 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHH
Q 002718 648 FVTWNAMICGYAHHGLGEEALKVFENMELENVKPN--HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSC 724 (888)
Q Consensus 648 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 724 (888)
...+..+...+...|++++|+..|++..+.+..|. ...+..+..++.+.|++++|+..+++.... .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34667777777788888888888888876432332 246777777888888888888888877742 34 3445566
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Q 002718 725 MVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGM 800 (888)
Q Consensus 725 l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 800 (888)
++..+...|+...+..-.+.. ...++.|...++++++.+|++ |..+.+.+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 667777777666555333321 123578889999999998866 5555555555554
No 154
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.69 E-value=0.1 Score=55.18 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVD 727 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 727 (888)
.+|..+++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|..+|+.=.+++|-.|. --.+.++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~--yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPE--YVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChH--HHHHHHH
Confidence 467788888888888999999999999998888 4556677776555 58899999999987777765443 3467788
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHHc
Q 002718 728 ILGRSGQLNKALKLIQEM---PFEAD--DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQD----SSTYILLSNIYADA 798 (888)
Q Consensus 728 ~l~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 798 (888)
-|.+.|+-..|..+|++. .+.|| ..+|..++..-..-||+....++-++.....|.+ ...-.++.+-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 899999999999999987 24554 3589999999889999999999999888877732 12334555667777
Q ss_pred CCchHHHHHHHHH
Q 002718 799 GMWDKLSYTRRLM 811 (888)
Q Consensus 799 g~~~~a~~~~~~m 811 (888)
+.+..-..-++.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 7777665555544
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00037 Score=67.69 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCC
Q 002718 690 LRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKLIQEM-PFEADD-VIWRTLLSICKIHGN 766 (888)
Q Consensus 690 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~ 766 (888)
..-..+.+++++|+..|...+ .+.|+-. .|..=..+|.+.|.++.|++-.+.. .+.|.. ..|..|.-++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 334455666666666666666 4455433 3344456666666666666665554 455532 356666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHH
Q 002718 767 VEVAEEAASSLLQLDPQDSSTYILL 791 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~~~~l 791 (888)
++.|++.|+++++++|++......|
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 6666666666666666665443333
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.69 E-value=0.00045 Score=60.42 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---cchHHHH
Q 002718 720 EHYSCMVDILGRSGQLNKALKLIQEM-PFEAD----DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQD---SSTYILL 791 (888)
Q Consensus 720 ~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 791 (888)
..+..++..+.+.|++++|.+.++++ ...|+ +..+..+..++...|+++.|...+++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667788899999999999999887 23333 3567778889999999999999999999999875 5679999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCC
Q 002718 792 SNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 792 ~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
+.+|.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999998887643
No 157
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.68 E-value=0.00055 Score=72.51 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=62.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCC
Q 002718 690 LRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGN 766 (888)
Q Consensus 690 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 766 (888)
...+...|++++|+..|++++. ..| +...|..+..+|.+.|++++|+..++++ .+.| ++..|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4455566777777777777663 233 2345556666666666666666666665 3444 44456666666666666
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 002718 767 VEVAEEAASSLLQLDPQDSSTYILLSNI 794 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 794 (888)
++.|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666666655555443
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.62 E-value=0.00013 Score=55.58 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=46.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 757 LLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 757 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677888888888999999888888888888999999999999988888887654
No 159
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=6.5e-05 Score=47.10 Aligned_cols=31 Identities=35% Similarity=0.651 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 002718 245 VSWNTVIAGCVQNYKFIEALKLFKIMQKIGV 275 (888)
Q Consensus 245 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 275 (888)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999999888774
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00067 Score=66.01 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=82.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCC
Q 002718 657 GYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQ 734 (888)
Q Consensus 657 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~ 734 (888)
-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ...|..|..+|...|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 46678899999999999999 788 66778888899999999999999888877 56676 4489999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHH
Q 002718 735 LNKALKLIQEM-PFEADDVIWRTLLS 759 (888)
Q Consensus 735 ~~~A~~~~~~~-~~~p~~~~~~~ll~ 759 (888)
+++|++.|++. .+.|+..+|..=|.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999887 78897776655444
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00037 Score=68.25 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 002718 718 QLEHYSCMVDILGRSGQLNKALKLIQEM-PF-EADDVIWRTLLSICKIH---GNVEVAEEAASSLLQLDPQDSSTYILLS 792 (888)
Q Consensus 718 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 792 (888)
|.+.|-.|...|.+.|+.+.|..-|.+. .+ .+++.++..+..++... .+..++..++++++.++|.|..+..+|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4566777777777777777777777666 33 34666777777765443 2678999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHHHhCCCccCCCe
Q 002718 793 NIYADAGMWDKLSYTRRLMRQNKVRKEPGC 822 (888)
Q Consensus 793 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 822 (888)
-.+..+|++.+|...|+.|.+......|..
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 999999999999999999988766544443
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.52 E-value=9.7e-05 Score=46.27 Aligned_cols=31 Identities=45% Similarity=0.757 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENV 679 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 679 (888)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.49 E-value=0.0011 Score=62.24 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Q 002718 752 VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGM 800 (888)
Q Consensus 752 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 800 (888)
..|..+...+...|+++.|+..++++++..|++...+..++.+|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4666777777788888888888888888888888888888888888776
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.0085 Score=53.79 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=103.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 002718 679 VKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-PFEA---DDVIW 754 (888)
Q Consensus 679 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p---~~~~~ 754 (888)
..|....-..|..+....|+..||...|++...- -..-+....-.+..+....+++.+|...+++. ..+| .+..-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677777778888999999999999999988742 33445666778888888899999999888876 2333 23334
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 755 RTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 755 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
-.+...+...|..+.|+..++.++.-.| ++..-...+..++++|+.+++..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 4556678889999999999999999999 78888889999999999999865544443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.00089 Score=62.74 Aligned_cols=91 Identities=18% Similarity=0.026 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 002718 719 LEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD----DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSN 793 (888)
Q Consensus 719 ~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 793 (888)
...|..++..+...|++++|+..+++. ...|+ +.+|..+...+...|+.+.|+..++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344555666666677777777777665 22222 3478888888999999999999999999999999999999999
Q ss_pred HHH-------HcCCchHHHHHHH
Q 002718 794 IYA-------DAGMWDKLSYTRR 809 (888)
Q Consensus 794 ~~~-------~~g~~~~a~~~~~ 809 (888)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 998 8888886655444
No 166
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.47 E-value=7.7e-05 Score=47.46 Aligned_cols=32 Identities=22% Similarity=0.530 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHHcCCchHHH
Q 002718 774 ASSLLQLDPQDSSTYILLSNIYADAGMWDKLS 805 (888)
Q Consensus 774 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 805 (888)
++++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999985
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0015 Score=69.23 Aligned_cols=103 Identities=13% Similarity=0.111 Sum_probs=85.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhh
Q 002718 654 MICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGR 731 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~ 731 (888)
....+...|++++|++.|++.++ ..| +...|..+..+|.+.|++++|+..+++++. +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 45667788999999999999999 678 567888889999999999999999999984 445 45678889999999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 002718 732 SGQLNKALKLIQEM-PFEADDVIWRTLLSIC 761 (888)
Q Consensus 732 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 761 (888)
.|++++|+..+++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5677655555555444
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0013 Score=58.68 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=78.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Q 002718 723 SCMVDILGRSGQLNKALKLIQEMP-FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGM 800 (888)
Q Consensus 723 ~~l~~~l~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 800 (888)
-....-+...|++++|..+|+-+. ..| |+..|..|..+|...++++.|...+..+..++++||.++++.+..|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 344455667899999999988762 344 677899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHh
Q 002718 801 WDKLSYTRRLMRQ 813 (888)
Q Consensus 801 ~~~a~~~~~~m~~ 813 (888)
.++|...+....+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999986654
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0062 Score=62.15 Aligned_cols=136 Identities=15% Similarity=0.231 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRA-CAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVD 727 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 727 (888)
.+|..++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++ .+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 468888999999989999999999998532 2245566655555 3345677779999999997755 45567888999
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 728 ILGRSGQLNKALKLIQEM-P-FEAD---DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 728 ~l~~~g~~~~A~~~~~~~-~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
.+.+.|+.+.|..+|++. . +.++ ..+|..++..=.++|+++....+.+++.+..|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987 2 3333 3599999999999999999999999999999874433
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.39 E-value=0.011 Score=58.70 Aligned_cols=157 Identities=10% Similarity=0.078 Sum_probs=92.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHH
Q 002718 655 ICGYAHHGLGEEALKVFENMELENVKPNH-AT---FISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDIL 729 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l 729 (888)
...+...|++++|.+.|+++.. ..|+. .+ ...++.++.+.+++++|...+++..+.++-.|+.. .+-.++...
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3345556667777777777666 34533 22 23445566666777777777777666655555544 111111110
Q ss_pred hhc---------------CC---HHHHHHHHHhC----CCC---CCHHH-----HH-------HHHHHHHHhCCHHHHHH
Q 002718 730 GRS---------------GQ---LNKALKLIQEM----PFE---ADDVI-----WR-------TLLSICKIHGNVEVAEE 772 (888)
Q Consensus 730 ~~~---------------g~---~~~A~~~~~~~----~~~---p~~~~-----~~-------~ll~~~~~~g~~~~a~~ 772 (888)
... .+ ..+|.+.+++. |-. |+... -+ ....-|.+.|++.-|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 000 01 12333333333 211 11110 01 12334778899999999
Q ss_pred HHHHHHhcCCC---CcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 773 AASSLLQLDPQ---DSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 773 ~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
-++.+++..|+ .+.+...+.++|...|..++|..+.+.+..
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 99999999886 566788999999999999999998876643
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.23 Score=51.35 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=75.8
Q ss_pred hhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002718 621 STLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVE 700 (888)
Q Consensus 621 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 700 (888)
+..+.-+...|+...|.++..+..-|+..-|...+.+++..|+|++-.++... .- .++-|...+.+|.+.|..+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHH
Confidence 33344455678888888888888788888888888888888888776665332 12 3366777778888888888
Q ss_pred HHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002718 701 KGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQE 744 (888)
Q Consensus 701 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 744 (888)
+|..+..++. +..-+.+|.+.|++.+|.+..-+
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888876632 23456778888888888766544
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.36 E-value=0.002 Score=53.32 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
|..+...+...|++++|+..+++..+ ..| +...+..+...+...|++++|.+.|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666555 334 22444455555555555555555555544
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.1 Score=56.72 Aligned_cols=76 Identities=7% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhH
Q 002718 420 SILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNY 499 (888)
Q Consensus 420 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 499 (888)
..++.|.+...+++-+.+-..+++ |....-.|...+...|.-++|.+.|-+--. | ...+..|...+++.+
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHH
Confidence 344555555555555555555443 334455566667777777777666543211 1 234455666666666
Q ss_pred HHHHHH
Q 002718 500 GMQIHS 505 (888)
Q Consensus 500 a~~~~~ 505 (888)
|.++-.
T Consensus 897 avelaq 902 (1189)
T KOG2041|consen 897 AVELAQ 902 (1189)
T ss_pred HHHHHH
Confidence 665544
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.00064 Score=51.68 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=48.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 725 MVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 725 l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
+...+.+.|++++|.+.+++. ...| ++..|..+..++...|+++.|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888877 4455 566888888899999999999999999999999874
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.32 E-value=0.47 Score=53.69 Aligned_cols=110 Identities=17% Similarity=0.068 Sum_probs=72.5
Q ss_pred hcCCChhHHHHHHHHHHHhC-CCCchhHHhHHHHHhhcCCChhHHHHHhccCCC---CCCccHHHHHHHHHhCCChhHHH
Q 002718 290 AALSNLKLGTQLHAHALKTD-FEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPN---CGLQSYNAIIVGYAQNGQGVEAL 365 (888)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 365 (888)
...+++..|.+....+.+.. -.+...++.+|+ ..+.|+.++|..+++.... .|..+..++-..|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 35677778887777776653 222233333332 4577888888887776543 35557777888888888888888
Q ss_pred HHHHHHHHcCCCCCchhHhhHHHHhhhhhchhhHHHHH
Q 002718 366 QLFRLLQKSGLGFNEITLSGAFSACAVIAGYLEGLQVH 403 (888)
Q Consensus 366 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 403 (888)
.+|++.... -|+..-...++.++.+.+++..-.++-
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887654 455666667777777777666544443
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.29 E-value=0.0056 Score=57.29 Aligned_cols=122 Identities=19% Similarity=0.139 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKPN--HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCM 725 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 725 (888)
..|..+...+...|++++|+..|++.......|. ..++..+..++.+.|++++|+..+++.... .|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHHH
Confidence 4566666677777777777777777766322221 235666777777777777777777776632 232 2334444
Q ss_pred HHHHh-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 002718 726 VDILG-------RSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADA 798 (888)
Q Consensus 726 ~~~l~-------~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 798 (888)
...+. +.|++++|.. .++.|...++++++.+|.+. ......+...
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~ 164 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY---IEAQNWLKIT 164 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH---HHHHHHHHHh
Confidence 44444 3333333322 23466777778888877533 3333334444
Q ss_pred CCc
Q 002718 799 GMW 801 (888)
Q Consensus 799 g~~ 801 (888)
|++
T Consensus 165 ~~~ 167 (168)
T CHL00033 165 GRF 167 (168)
T ss_pred cCC
Confidence 443
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.29 E-value=0.0056 Score=54.43 Aligned_cols=91 Identities=7% Similarity=0.025 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHH
Q 002718 648 FVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCM 725 (888)
Q Consensus 648 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 725 (888)
....-.+..-+...|++++|.++|+-+.. +.| +..-|..|..+|-..|++++|+..|..... +.| ++..+-.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHH
Confidence 33334444555566666666666666666 566 334555666666666666666666666552 222 23334444
Q ss_pred HHHHhhcCCHHHHHHHHH
Q 002718 726 VDILGRSGQLNKALKLIQ 743 (888)
Q Consensus 726 ~~~l~~~g~~~~A~~~~~ 743 (888)
...+...|+.++|.+-|+
T Consensus 110 g~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 110 AECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 445555555555554444
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.00037 Score=53.60 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=42.2
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 762 KIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 762 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
...|+++.|+..++++++.+|+++..+..++.+|.+.|++++|..+++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578888888888888888888888888888888888888888888875543
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.00094 Score=52.21 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=48.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
..+...++++.|...++++++++|+++..+..++.+|...|++++|.+.++..-+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999998888876543
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.20 E-value=0.00088 Score=54.08 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHH
Q 002718 661 HGLGEEALKVFENMELENVKP---NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLN 736 (888)
Q Consensus 661 ~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~ 736 (888)
.|+++.|+.+|+++.+. .| +...+..+..++.+.|++++|+.++++ . ...|. ......++..+.+.|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 57788888888888774 44 334555577788888888888888876 2 22232 233334467777778888
Q ss_pred HHHHHHHh
Q 002718 737 KALKLIQE 744 (888)
Q Consensus 737 ~A~~~~~~ 744 (888)
+|++.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 87777764
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.00048 Score=52.99 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 002718 731 RSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLS 792 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 792 (888)
..|++++|+++++++ ...| +..++-.+..+|...|+++.|+..+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 344555555555544 2222 4445555555555555555555555555555555544444444
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.16 E-value=0.41 Score=49.82 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=61.2
Q ss_pred HHHHHHhCCCCC----CHHHHHHHHHH--HHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 738 ALKLIQEMPFEA----DDVIWRTLLSI--CKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 738 A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
-..++++.++.| +..+-|.|.+| +..+|++.++.-...-+.+..| ++.+|.++|-++....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345666776665 45567777765 5689999999999999999999 9999999999999999999999998754
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.42 Score=52.18 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHH
Q 002718 512 MGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSY 572 (888)
Q Consensus 512 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 572 (888)
++.+....-.+.+++.+.|.-++|.+.|-+-..|- +-+..|...++|.+|.++-++
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666677777777777666655443331 234455555666666665544
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.11 E-value=0.011 Score=53.00 Aligned_cols=105 Identities=13% Similarity=0.223 Sum_probs=92.3
Q ss_pred hHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--
Q 002718 709 MLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM---PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ-- 783 (888)
Q Consensus 709 m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 783 (888)
..++..+.|+..+-..|...+.+.|+..||...+++. .+.-|+.+.-.+..+...-++...|...++++.+-.|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3344466788888889999999999999999999987 36668999999999999999999999999999999985
Q ss_pred CcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 784 DSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 784 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
.+....+++.+|...|++++|..-++...+
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 788899999999999999999888876654
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.08 E-value=0.41 Score=49.45 Aligned_cols=106 Identities=20% Similarity=0.221 Sum_probs=80.4
Q ss_pred hHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCCh
Q 002718 418 ANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQAL 497 (888)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 497 (888)
.+..|.-+...|+...|.++-.+..-|+...|-..+.+++..++|++-..+... +-++.-|-.++.+|.+.|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344456667778889999999888888888999999999999999877665432 23457888888888888888
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 002718 498 NYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKIL 539 (888)
Q Consensus 498 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 539 (888)
.+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 8888776651 1245677788888888887653
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.05 E-value=0.017 Score=64.06 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhc--CCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 002718 766 NVEVAEEAASSLLQL--DPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNK 815 (888)
Q Consensus 766 ~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 815 (888)
++..+...++++..+ +|.++..|..++-.+...|++++|...+++..+..
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 345666667776664 77788889999999999999999998888776654
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.016 Score=49.75 Aligned_cols=91 Identities=14% Similarity=0.186 Sum_probs=69.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHh
Q 002718 654 MICGYAHHGLGEEALKVFENMELENVKPNH--ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILG 730 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~ 730 (888)
+..++-..|+.++|+.+|++..+.|..... ..+..+.+++...|++++|..+|+.....++-.+... ....+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 456788889999999999999998877643 4788888999999999999999999886543322122 2233455778
Q ss_pred hcCCHHHHHHHHHh
Q 002718 731 RSGQLNKALKLIQE 744 (888)
Q Consensus 731 ~~g~~~~A~~~~~~ 744 (888)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999877654
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.96 E-value=0.053 Score=55.65 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=53.7
Q ss_pred chhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCC
Q 002718 626 MYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHH-GLGEEALKVFENMELE----NVKPN--HATFISVLRACAHIGL 698 (888)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~ 698 (888)
.|.+.|++..|-+. +..+...|... |++++|++.|++..+. | .|. ..++..+...+.+.|+
T Consensus 103 ~y~~~G~~~~aA~~-----------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 103 IYREAGRFSQAAKC-----------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHCT-HHHHHHH-----------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhcCcHHHHHHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCC
Confidence 45555555555333 33345556666 6777777777665442 2 221 1345566666777777
Q ss_pred HHHHHHHHHHhHhccCCCC----Chh-HHHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 699 VEKGLHYFNVMLSDYSLHP----QLE-HYSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 699 ~~~a~~~~~~m~~~~~~~p----~~~-~~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
+++|+++|+++....--.+ +.. +|...+-++...|+...|.+.+++.
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777776654321111 111 2222333444556676776666654
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.93 E-value=0.022 Score=56.93 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKPNH----ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMV 726 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 726 (888)
|...+..+.+.|++++|+..|+.+.. ..|+. ..+..+..++...|++++|...|+.+.+.+...|..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------- 216 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------- 216 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-------
Confidence 44434334556777777777777777 45643 356666667777777777777777766544332221
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Q 002718 727 DILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 727 ~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 786 (888)
+..|-.+...+...|+.+.|...++++++..|++..
T Consensus 217 ------------------------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 217 ------------------------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 223333444555677888888888888888886543
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.92 E-value=0.0022 Score=49.39 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q 002718 719 LEHYSCMVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHG-NVEVAEEAASSLLQLDP 782 (888)
Q Consensus 719 ~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 782 (888)
+..|..++..+.+.|++++|+..+++. ...| ++.+|..+..++...| +++.|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445666777777777777777777765 3445 4567888888888888 79999999999999887
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.009 Score=60.39 Aligned_cols=126 Identities=12% Similarity=0.109 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH---hHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNV---MLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEM-------PF-EADDV 752 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~-------~~-~p~~~ 752 (888)
.|..|...|.-.|+++.|+...+. +.+++|-... ...++.+.+.+.-.|+++.|.+.++.. +- ...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 466666666667788888766553 2234454332 335677777777788888887777643 11 11233
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQL----D--PQDSSTYILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
..-+|.+.|..-.+++.|+....+=+.+ + .....++..|+++|...|..++|+.+.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4556777777777778887777665544 2 23556788888888888888888765443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.014 Score=50.15 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=53.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHH
Q 002718 726 VDILGRSGQLNKALKLIQEM---PFEAD--DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ---DSSTYILLSNIYAD 797 (888)
Q Consensus 726 ~~~l~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 797 (888)
..++-..|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++..|+ +......++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455556666666666654 11111 224555666777778888888888877777776 66666777777788
Q ss_pred cCCchHHHHHH
Q 002718 798 AGMWDKLSYTR 808 (888)
Q Consensus 798 ~g~~~~a~~~~ 808 (888)
.|++++|....
T Consensus 88 ~gr~~eAl~~~ 98 (120)
T PF12688_consen 88 LGRPKEALEWL 98 (120)
T ss_pred CCCHHHHHHHH
Confidence 88888876654
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.86 E-value=0.0019 Score=44.24 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 002718 752 VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSN 793 (888)
Q Consensus 752 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 793 (888)
.+|..+..++...|+++.|++.++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999999988875
No 194
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.83 E-value=0.73 Score=47.27 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhcc-CCCCChh--
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKP-----NHA-TFISVLRACAHIGLVEKGLHYFNVMLSDY-SLHPQLE-- 720 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~-- 720 (888)
.+..+...+.+.|++++|+++|++....-... +.. .|...+-++...|+.-.|...|++..... +...+.+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 44566778889999999999999887643221 221 34444557777899999999999876332 2222322
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 002718 721 HYSCMVDILGR--SGQLNKALKLIQEMP 746 (888)
Q Consensus 721 ~~~~l~~~l~~--~g~~~~A~~~~~~~~ 746 (888)
....|++++-. ...+++|+.-++.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 34555555532 345677777777663
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.82 E-value=0.28 Score=52.95 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=100.9
Q ss_pred HHHHHHHhccCChhHHHH--HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCC
Q 002718 485 GSVLKACAGQQALNYGMQ--IHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKR 562 (888)
Q Consensus 485 ~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 562 (888)
+..=++|.+-.+..--.- -++++.+.|-.|+... +.+.++-.|++.+|-++|. ++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~ 660 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGH 660 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCc
Confidence 333344544444433222 2344555665565433 3445666788888888875 3566
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHh
Q 002718 563 SEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEK 642 (888)
Q Consensus 563 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 642 (888)
...|+++|.+|+-- -..+-+...|+.++-+.+...-.+ ..-++.--.+-.+++..+|+.++|..+
T Consensus 661 enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i--- 725 (1081)
T KOG1538|consen 661 ENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI--- 725 (1081)
T ss_pred hhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh---
Confidence 66777777666421 122223333443333333222111 111111112334455566666666443
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHH
Q 002718 643 SPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY 722 (888)
Q Consensus 643 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 722 (888)
...+|-.+-+.++-+++.. .+..+...+..-+.+.....-|-++|.+|-. .
T Consensus 726 ---------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ 776 (1081)
T KOG1538|consen 726 ---------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------L 776 (1081)
T ss_pred ---------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------H
Confidence 2333444444444333322 1233444444445555566667777776642 2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 002718 723 SCMVDILGRSGQLNKALKLIQEMP-FEAD 750 (888)
Q Consensus 723 ~~l~~~l~~~g~~~~A~~~~~~~~-~~p~ 750 (888)
..++++....++++||..+.++.| +.||
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCcccccc
Confidence 456777777788888887777774 4444
No 196
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=1.2 Score=49.57 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=81.0
Q ss_pred hhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002718 620 SSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLV 699 (888)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 699 (888)
.+--+.-+...|+...|.++-.+..-||-..|---+.+++..+++++-+++-+.+.. +.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccH
Confidence 333444556778889999999988888888888888899999988877666554321 34566677889999999
Q ss_pred HHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 002718 700 EKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQE 744 (888)
Q Consensus 700 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~ 744 (888)
+||.+++.+.. +. .-.+.+|.+.|++.+|.++.-+
T Consensus 761 ~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 761 DEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 99998887653 21 1467888899998888876544
No 197
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.0083 Score=59.96 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcchHHHHHH
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEM-PFEAD----DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ---DSSTYILLSN 793 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~ 793 (888)
|..-+..+.+.|++++|...|+.. ..-|+ +..+-.+..++...|+++.|...|+++++..|+ .+.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444456666666555554 12232 235556777888999999999999999999887 4667778899
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 002718 794 IYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 794 ~~~~~g~~~~a~~~~~~m~~ 813 (888)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987754
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.81 Score=46.71 Aligned_cols=269 Identities=16% Similarity=0.150 Sum_probs=165.1
Q ss_pred cCCHHHHHHHHHhcC---CCCcccHHHHHHH--HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHH
Q 002718 529 CGMVEEAKKILKRTE---ERDVVSWNAIISG--FSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQ 603 (888)
Q Consensus 529 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 603 (888)
.|+-..|.++-.+.. ..|....-.++.+ -.-.|++++|.+-|+-|.... ..-..-+..|.-..-+.|+.+.|++
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHH
Confidence 455555555544332 2233333333322 233577777777777776520 1111123333334456777777777
Q ss_pred HHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC-----CCCHH--HHHHHHHHHH---hCCCHHHHHHHHHH
Q 002718 604 LHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP-----KRDFV--TWNAMICGYA---HHGLGEEALKVFEN 673 (888)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~ 673 (888)
.-+........ -.....+.++..+..|+++.|+++.+.-. .+|+. .--.|+.+-+ -..+...|...-.+
T Consensus 176 yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 76666554322 23455677788888888888888887533 44442 2222332221 22456677777666
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 002718 674 MELENVKPNHA-TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM----PFE 748 (888)
Q Consensus 674 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~----~~~ 748 (888)
..+ +.||-+ .-..-..++.+.|++.++-.+++.+= ...|.+..+... ...|.|+. +++-+++. .++
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk 325 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLK 325 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcC
Confidence 666 788775 44555678999999999999999886 345666544322 34455653 22222222 366
Q ss_pred CCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-CCchHHHHHHH
Q 002718 749 ADDV-IWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADA-GMWDKLSYTRR 809 (888)
Q Consensus 749 p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~ 809 (888)
||.. ..-+...+-...|++..|....+.+....| ..++|.+|+++-... |+-.++.....
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 7654 455556677788999999999999999999 678899999998766 88777655443
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.005 Score=48.02 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=52.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 002718 727 DILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLS 792 (888)
Q Consensus 727 ~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 792 (888)
.+|.+.+++++|.+.++.+ ...| ++..|......+...|+++.|...++++++..|+++.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4677888888888888877 4555 5667888888889999999999999999999998776655443
No 200
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.72 E-value=0.017 Score=61.35 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=83.6
Q ss_pred hHHHHHhhhccCChHHHHHHHhhcCCC------CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 002718 418 ANSILDMYGKCQDVIEACHVFDEMERR------DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKAC 491 (888)
Q Consensus 418 ~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 491 (888)
...+++......+++.+..++-+.... -..+..++|+.|.+.|..++++.+++.=...|+-||.+|++.++..+
T Consensus 69 ld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~f 148 (429)
T PF10037_consen 69 LDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHF 148 (429)
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHH
Confidence 344455555555555555555554431 12345688888999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 002718 492 AGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKC 529 (888)
Q Consensus 492 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 529 (888)
.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 149 l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 149 LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999988887777777766655555554
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.69 E-value=0.61 Score=45.26 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=113.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKP----NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMV 726 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 726 (888)
|-.=+..-.+.|++++|.+.|+.+... .| ...+...++.++.+.+++++|+..+++....++-.|+.. |...+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 333344667789999999999999874 34 345777788888999999999999999988888888876 33333
Q ss_pred HHHhh-------cCCHHHH-------HHHHHhCC---CCCCHHHH------------HHHHHHHHHhCCHHHHHHHHHHH
Q 002718 727 DILGR-------SGQLNKA-------LKLIQEMP---FEADDVIW------------RTLLSICKIHGNVEVAEEAASSL 777 (888)
Q Consensus 727 ~~l~~-------~g~~~~A-------~~~~~~~~---~~p~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~ 777 (888)
.++.. ..+..-+ .+++++.| ..||+..- .+....|.++|.+.-|..-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 33332 1122222 23444443 33454321 12334578899999999999999
Q ss_pred HhcCCCC---cchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 778 LQLDPQD---SSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 778 ~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
++..|+. ..++..+.++|...|..++|.+..+.+...
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 9997764 446788889999999999999999888764
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.68 E-value=0.015 Score=59.28 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 002718 684 ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGR-SGQLNKALKLIQEM--PFEADDVIWRTLLSI 760 (888)
Q Consensus 684 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 760 (888)
.+|..++....+.+..+.|..+|.+..+...+ +...|...+.+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888899999999999999999999843222 33445555555344 56667799999987 466788999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 761 CKIHGNVEVAEEAASSLLQLDPQDS---STYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 761 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
+...|+.+.|+.+|++++..-|.+. ..|....+.=.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877654 57788888888899999999998888653
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.67 E-value=0.3 Score=48.54 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcc---c---HHHHHHHHHcCCChHHHHHHHHHHHHC
Q 002718 523 IDMYCKCGMVEEAKKILKRTEERDVV---S---WNAIISGFSGAKRSEDAHKFFSYMLKM 576 (888)
Q Consensus 523 i~~~~~~g~~~~A~~~~~~~~~~~~~---~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 576 (888)
...+...|++++|.+.|+.+....+. . .-.+..+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455677888888888777643221 1 223456677888888888888888774
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.66 E-value=0.0074 Score=63.22 Aligned_cols=64 Identities=17% Similarity=-0.019 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 750 DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSST---YILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 750 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
++..|..+..+|...|++++|...++++++++|++..+ |+.++.+|...|+.++|...++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56678888888888888888888888888888888754 88888888888888888777665544
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.61 E-value=0.016 Score=61.45 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=84.6
Q ss_pred CChhhHHHHHHhhhcCCChhhHHHHhcccCC-C-----ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 002718 211 KDVVTGSALVDMYAKCKKLDDSVSLFNRMSE-R-----NWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYAS 284 (888)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 284 (888)
-+......+++......+++.+..++-+... | -..|.+++|+.|.+.|..+++++++..=...|+-||.+||+.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3444555566666666667777777665543 1 123556888888888888888888888888888999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcC
Q 002718 285 ILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKC 327 (888)
Q Consensus 285 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 327 (888)
|+..+.+.|++..|.++...|...+.-.+..++.--+..+.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9988888888888888888888777666666555444444443
No 206
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.61 E-value=0.047 Score=45.04 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhHhccCCCCChh
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENV-KPNHATFISVLRACAHIG--------LVEKGLHYFNVMLSDYSLHPQLE 720 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 720 (888)
+-...|.-+...|++.....+|+.+++.|+ -|+..+|+.++.+-.+.. ++-+.+.+|+.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344566677777999999999999999999 899999999999876653 344677888888844 8999999
Q ss_pred HHHHHHHHHhh
Q 002718 721 HYSCMVDILGR 731 (888)
Q Consensus 721 ~~~~l~~~l~~ 731 (888)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.58 E-value=0.15 Score=49.24 Aligned_cols=151 Identities=16% Similarity=0.160 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHH
Q 002718 653 AMICGYAHHGLGEEALKVFENMELENVKPN----HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVD 727 (888)
Q Consensus 653 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~ 727 (888)
.....+...|++.+|.+.|+++... -|+ ......++.++.+.|++++|...+++.++.++-.|... .+-.++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3445667778888888888888774 332 23556677788888888888888888877776666543 2222222
Q ss_pred HHh-----------hcCCHHHHHHHHHhC----CCCCCH--------HHHHH-------HHHHHHHhCCHHHHHHHHHHH
Q 002718 728 ILG-----------RSGQLNKALKLIQEM----PFEADD--------VIWRT-------LLSICKIHGNVEVAEEAASSL 777 (888)
Q Consensus 728 ~l~-----------~~g~~~~A~~~~~~~----~~~p~~--------~~~~~-------ll~~~~~~g~~~~a~~~~~~~ 777 (888)
.+. ..+...+|...++.. |-.+-. .+.+. +...|.+.|.+.-|..-++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 211 122234555555444 322211 11111 234466789999999999999
Q ss_pred HhcCCCC---cchHHHHHHHHHHcCCchHHH
Q 002718 778 LQLDPQD---SSTYILLSNIYADAGMWDKLS 805 (888)
Q Consensus 778 ~~~~p~~---~~~~~~l~~~~~~~g~~~~a~ 805 (888)
++..|+. ..+...+..+|.+.|..+.+.
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999974 346788999999999988543
No 208
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.52 E-value=0.052 Score=49.36 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=71.9
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHH
Q 002718 692 ACAHIGLVEKGLHYFNVMLSDYSLHP--QLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEV 769 (888)
Q Consensus 692 a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 769 (888)
.....|+.+.+...++++..-+.-.+ +... ..........+++.- ..+...++..+...|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHH
Confidence 34566778888888887775543221 1111 122222223333221 2355667777889999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 770 AEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 770 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
|...+++++..+|-+...|..+..+|...|+..+|.++++.++
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888775
No 209
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.5 Score=48.58 Aligned_cols=147 Identities=12% Similarity=0.090 Sum_probs=70.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hHHHHHHHHH
Q 002718 656 CGYAHHGLGEEALKVFENMELENVKPN-----HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-EHYSCMVDIL 729 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l 729 (888)
+-..+.|++.+|.+.|.+.+. +.|+ ...|.....+..+.|+.++|+.--+... .+.|.- ..|..-..++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCH 331 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHH
Confidence 334456666666666666655 4442 2345555555566666666666665554 233321 1222222333
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCH---HHHH---------------HHHHHHHHhCCHHHHHHHHHHHHhcCCC-Ccc---
Q 002718 730 GRSGQLNKALKLIQEM-PFEADD---VIWR---------------TLLSICKIHGNVEVAEEAASSLLQLDPQ-DSS--- 786 (888)
Q Consensus 730 ~~~g~~~~A~~~~~~~-~~~p~~---~~~~---------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~--- 786 (888)
.-.+++++|.+-+++. ....+. .+|. .+++.-+...+.+........++...|+ +..
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~ 411 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQK 411 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhH
Confidence 3445566666666544 222221 1222 2222222223333333444445555564 222
Q ss_pred ----hHHHHHHHHHHcCCchHHHHH
Q 002718 787 ----TYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 787 ----~~~~l~~~~~~~g~~~~a~~~ 807 (888)
-+.-.++.|...++.+++.+.
T Consensus 412 eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 412 EAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 245667777777777776554
No 210
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.51 E-value=0.028 Score=46.32 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHhCCCCchhH
Q 002718 246 SWNTVIAGCVQNYKFIEALKLFKIMQKIGV-GISQSTYASILRSCAALS--------NLKLGTQLHAHALKTDFEMDVIV 316 (888)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 316 (888)
+-...|..+...+++.....+|..+++.|+ .|+..+|+.++.+.+++. .+.....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566667777999999999999999999 899999999999887654 23456678888889999999999
Q ss_pred HhHHHHHhhc
Q 002718 317 GTATLDMYAK 326 (888)
Q Consensus 317 ~~~li~~~~~ 326 (888)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887654
No 211
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.48 E-value=0.029 Score=52.45 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=81.0
Q ss_pred HHHHHhC--CCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 002718 637 RIMFEKS--PKRDFVTWNAMICGYAHH-----GLGEEALKVFENMELENVKPNHATFISVLRACAHI------------- 696 (888)
Q Consensus 637 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 696 (888)
...|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4566666 477888899998888754 66777788899999999999999999999987542
Q ss_pred ---CCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCH
Q 002718 697 ---GLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQL 735 (888)
Q Consensus 697 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~ 735 (888)
.+.+-|++++++|. .+|+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 24667899999997 679999999999999999888763
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.033 Score=57.08 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=87.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHH
Q 002718 689 VLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVE 768 (888)
Q Consensus 689 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 768 (888)
-.+.+.+.|++..|..-|+++.+-.. +.+.-+.++..... ..-..++..|.-.|.+.+++.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~--------------~~~~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLE--------------YRRSFDEEEQKKAE-----ALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhh--------------ccccCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhHH
Confidence 35567777777777777776653211 01111111111111 112345666777788889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHH
Q 002718 769 VAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIY 848 (888)
Q Consensus 769 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~ 848 (888)
.|+....++++++|+|.-+++.-+.+|...|+++.|...++++.+. .|...+|.
T Consensus 275 ~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------------------~P~Nka~~ 328 (397)
T KOG0543|consen 275 EAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--------------------------EPSNKAAR 328 (397)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------------------CCCcHHHH
Confidence 9999999999999999999999999999999999999999888652 34446677
Q ss_pred HHHHHHHHHHHH
Q 002718 849 EKLGLLIGEMKW 860 (888)
Q Consensus 849 ~~l~~l~~~~~~ 860 (888)
..|..|.+++++
T Consensus 329 ~el~~l~~k~~~ 340 (397)
T KOG0543|consen 329 AELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHHH
Confidence 777666666654
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.46 E-value=0.02 Score=48.12 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=71.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC---CcchHHHHHHHHHHcCC
Q 002718 727 DILGRSGQLNKALKLIQEM-P-FEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLD-PQ---DSSTYILLSNIYADAGM 800 (888)
Q Consensus 727 ~~l~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~ 800 (888)
-++...|++++|++.|.+. . .+.++..||.-..+++.+|+.+.|..-+++++++. |. --.+|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888776 3 34578889999999999999999999999999985 33 23468889999999999
Q ss_pred chHHHHHHHHHHhCC
Q 002718 801 WDKLSYTRRLMRQNK 815 (888)
Q Consensus 801 ~~~a~~~~~~m~~~~ 815 (888)
.|+|..-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999988888776655
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.42 E-value=0.36 Score=52.17 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 002718 656 CGYAHHGLGEEALKVFENMELE 677 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~ 677 (888)
.+|.+.|+..+|..+++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 4566778888888888877654
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=1.9 Score=48.70 Aligned_cols=144 Identities=12% Similarity=-0.018 Sum_probs=87.8
Q ss_pred HHHHHHhhhcCCChhhHHHHhcccCCCChhHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcC
Q 002718 216 GSALVDMYAKCKKLDDSVSLFNRMSERNWVSW---NTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAAL 292 (888)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 292 (888)
...-++++++...++.|..+.+.-..+....- -.-.+.+.+.|++++|...|-+-... +.| +.+++-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 34456777888888888888766443322222 22334566789999999888776532 122 2345555555
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCc--cHHHHHHHHHhCCChhHHHHH
Q 002718 293 SNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQ--SYNAIIVGYAQNGQGVEALQL 367 (888)
Q Consensus 293 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~ 367 (888)
.....-...++.+.+.|+.... --+.|+++|.|.++.+.-.+..+... .+.. -....+..+-+.+-.++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 5556666677788888864333 34678899999999888888877766 2222 233444444444444444443
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.32 E-value=0.44 Score=49.68 Aligned_cols=156 Identities=16% Similarity=0.125 Sum_probs=92.6
Q ss_pred hhhcCCHHHHHHHHHhCCCC-------CHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 002718 627 YSKCGNVQDSRIMFEKSPKR-------DFVTWNAMICGYAH---HGLGEEALKVFENMELENVKPNHATFISVLRACAH- 695 (888)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 695 (888)
|-...+++.-.++++.+... ....--...-++-+ .|+.++|++++..+....-.++..||..+...|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 44455555555555554421 11111123334555 68888888888886666566777787777766532
Q ss_pred --------cCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHH----HHHHHH----H---hC-CCCCCHH--H
Q 002718 696 --------IGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLN----KALKLI----Q---EM-PFEADDV--I 753 (888)
Q Consensus 696 --------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~----~A~~~~----~---~~-~~~p~~~--~ 753 (888)
....++|+..|.+.- .+.|+..+=-.++.++.-.|... +..++. . +- ...+... .
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd 307 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWD 307 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 224677887777543 55565543333344444444322 222222 1 11 1333333 4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 754 WRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 754 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
+.+++.++...||.+.|.+++++++.+.|..-
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 57889999999999999999999999987543
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.30 E-value=0.058 Score=50.56 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHH
Q 002718 580 PDDFTYATLLDTCG-----NLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAM 654 (888)
Q Consensus 580 p~~~t~~~ll~a~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 654 (888)
-|..+|..++..+. +.|.++-....+..|.+.|++.|..+|+.|++.+-+ |.+- -..+|+.+. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F-------~-- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF-------M-- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh-------c--
Confidence 34444444444443 235555555566667777777777777777777665 2221 111121111 0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002718 655 ICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGL 698 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 698 (888)
-...+.+-|++++++|...|+-||..|+..|+..+.+.+.
T Consensus 114 ----hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ----HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1113457899999999999999999999999999876554
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.15 E-value=1.5 Score=43.20 Aligned_cols=193 Identities=19% Similarity=0.173 Sum_probs=135.5
Q ss_pred cchhhhhccchhhcCCHHHHHHHHHhCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002718 617 VYISSTLVDMYSKCGNVQDSRIMFEKSP-----KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLR 691 (888)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 691 (888)
..........+...+.+..+...+.... ......+..+...+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3445556666677777777766666543 3344566677777778888888999888888743333 122222233
Q ss_pred -HHHhcCCHHHHHHHHHHhHhccCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH
Q 002718 692 -ACAHIGLVEKGLHYFNVMLSDYSLHP----QLEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD--DVIWRTLLSICKI 763 (888)
Q Consensus 692 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 763 (888)
++...|++++|...+++... ..| ....+......+...++.++|...+.+. ...++ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 78888999999999988853 233 2334444455567788899999888877 33333 6778888888888
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 764 HGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 764 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999887677788888888877778888877665544
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.15 E-value=1.9 Score=44.19 Aligned_cols=254 Identities=16% Similarity=0.098 Sum_probs=140.7
Q ss_pred CCCcchHHHHHHHH--hccCChhHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccH
Q 002718 478 EPDEFTYGSVLKAC--AGQQALNYGMQIHSRIIKSGMGSNLFV--GSALIDMYCKCGMVEEAKKILKRTEER---DVVSW 550 (888)
Q Consensus 478 ~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 550 (888)
..|...+..++.+. .-.|+.+.+.+-|+.|... |.... ...|.-.--+.|..+.|...-+..-.. -.-.|
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~ 191 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAA 191 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHH
Confidence 34444444454443 2346666666666665432 11111 112222234556666666665554432 22456
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcC---cccHHHHHHHHHHHHHhCCCCCcchh-hhh
Q 002718 551 NAIISGFSGAKRSEDAHKFFSYMLKMG-VKPDDF--TYATLLDTCGN---LATVGLGMQLHAQIIKQEMQSDVYIS-STL 623 (888)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 623 (888)
.+.+...+..|+|+.|+++++.-+... +.++.. .-..||.+-+. ..+...|+..-.+..+ +.||..-- ..-
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~A 269 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVA 269 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHH
Confidence 777778888888888888887765532 344432 12233332211 1234444444444333 33442221 122
Q ss_pred ccchhhcCCHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHCCCCCCH-HHHHHHHHHHHhcC
Q 002718 624 VDMYSKCGNVQDSRIMFEKSPK--RDFVTWNAMICGYAHHGLGEEALKVFE---NMELENVKPNH-ATFISVLRACAHIG 697 (888)
Q Consensus 624 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~---~m~~~g~~p~~-~t~~~ll~a~~~~g 697 (888)
...+.+.|++.++-.+++.+.+ |.+..|. +-.+++.|+ .++.-++ .+.+ ++||. .....+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLES--LKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhcc
Confidence 3456778888888888877763 3333332 223444554 3333333 3333 67744 67777788888888
Q ss_pred CHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 002718 698 LVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRS-GQLNKALKLIQEM 745 (888)
Q Consensus 698 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~-g~~~~A~~~~~~~ 745 (888)
++..|..--+... ...|....|..|.+.-... |+-.++...+.+.
T Consensus 344 e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 344 EFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred chHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 8888877766665 5678888888888876544 8888888888765
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=96.14 E-value=0.34 Score=51.32 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhh
Q 002718 664 GEEALKVFENMEL-ENVKPNH-ATFISVLRACAH---------IGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGR 731 (888)
Q Consensus 664 ~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~ 731 (888)
.+.|+.+|.+... +.+.|+- ..|..+..++.. .....+|.++-++..+ +.| |+.....+..++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 5778889998881 1267754 455555444332 2234566677776663 333 45556667777777
Q ss_pred cCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHcCCchHHHHHH
Q 002718 732 SGQLNKALKLIQEM-PFEADD-VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNI-YADAGMWDKLSYTR 808 (888)
Q Consensus 732 ~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~a~~~~ 808 (888)
.|+++.|..+|++. .+.||. .+|-.....+.-.|+.+.|.+.++++++++|....+-++-.++ .+-....++|.+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 88899999999888 577754 5677777777888999999999999999999877766666665 44455567777665
Q ss_pred H
Q 002718 809 R 809 (888)
Q Consensus 809 ~ 809 (888)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.69 Score=45.72 Aligned_cols=174 Identities=16% Similarity=0.096 Sum_probs=86.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 002718 635 DSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDY 713 (888)
Q Consensus 635 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 713 (888)
...+.+++..++....--.-.......|++.+|..+|+...+ ..| +...-..+..++...|+++.|..++..+-.+.
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 334455555544222222233455666777777777777766 345 34555666667777777777777776653221
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcchHHH
Q 002718 714 SLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLD--PQDSSTYIL 790 (888)
Q Consensus 714 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~ 790 (888)
. .........=+..+.+.....+..++.++..-.| |...--.+...+...|+.+.|...+-.+++.+ -+|...--.
T Consensus 199 ~-~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 199 Q-DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred h-hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 0 0011111222344444444444444444443344 33344444445555555555555555555543 234555555
Q ss_pred HHHHHHHcCCchHH-HHHHHHH
Q 002718 791 LSNIYADAGMWDKL-SYTRRLM 811 (888)
Q Consensus 791 l~~~~~~~g~~~~a-~~~~~~m 811 (888)
|..++...|.-|.+ .+.|++|
T Consensus 278 lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 278 LLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHHhcCCCCHHHHHHHHHH
Confidence 55555555544433 3344433
No 222
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.23 Score=47.55 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhh-----hc
Q 002718 550 WNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISST-----LV 624 (888)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----li 624 (888)
-+.++..+...|.+.-.+.++++.++...+-++.....+.+.-.+.|+.+.|...++...+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3556666777777888888888888865556677777777777888888888888887766533333333333 33
Q ss_pred cchhhcCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 002718 625 DMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHAT 685 (888)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 685 (888)
..|.-+.++..|...|+++. +.|++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l 321 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYL 321 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccch
Confidence 34555666677777776665 34555555544445555777777777777777 4554443
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.33 Score=48.17 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=66.2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCCHH-H
Q 002718 680 KP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSG---QLNKALKLIQEM-PFEADDV-I 753 (888)
Q Consensus 680 ~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g---~~~~A~~~~~~~-~~~p~~~-~ 753 (888)
.| |...|..|..+|...|+.+.|..-|....+-.| ++++.+..+..++..+. ...++.++++++ ..+|+.+ .
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 55 556777777777777777777777777663322 23444555555554332 345677777776 4566444 4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Q 002718 754 WRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 754 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 786 (888)
..-|.-.+...|++..|...++.+++..|.+..
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 444445677788888888888888888765443
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=0.59 Score=45.13 Aligned_cols=129 Identities=12% Similarity=0.164 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHH-H-HHHH
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKLIQEM----PFEADDV-I-WRTL 757 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~----~~~p~~~-~-~~~l 757 (888)
.+-.....+...|++++|+..|+.+...+.-.|-.. ..-.+++++.+.|++++|...+++. |-.|... + |..-
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 344455667889999999999999998876666544 5567889999999999999888775 4444432 1 1111
Q ss_pred HHH----------HHHhCCHHHHHHHHHHHHhcCCCCcch-----------------HHHHHHHHHHcCCchHHHHHHHH
Q 002718 758 LSI----------CKIHGNVEVAEEAASSLLQLDPQDSST-----------------YILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 758 l~~----------~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
+.. .+..+....|...++.+++..|+++-. -...+..|.+.|.|..|..-++.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 111 122345678999999999999985443 35568889999999999777776
Q ss_pred HHh
Q 002718 811 MRQ 813 (888)
Q Consensus 811 m~~ 813 (888)
+.+
T Consensus 167 v~~ 169 (203)
T PF13525_consen 167 VIE 169 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.80 E-value=0.074 Score=48.31 Aligned_cols=72 Identities=18% Similarity=0.268 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH----hccCCCCChhHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVML----SDYSLHPQLEHY 722 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 722 (888)
.....++..+...|++++|+++.+++.. ..| |...|..++.++...|+..+|.+.|+++. ++.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3556677888899999999999999999 688 77899999999999999999999998764 356888877643
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.4 Score=46.05 Aligned_cols=139 Identities=10% Similarity=0.036 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCC----CCChhHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSL----HPQLEHYSCM 725 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~----~p~~~~~~~l 725 (888)
.-+.++..+.-+|.+.-.+.++++.++..-.-+......|++.-.+.|+.+.|..+|++..+..+. .-.......+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345677777778888888999999998533337788889999999999999999999977654332 2222233344
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchH
Q 002718 726 VDILGRSGQLNKALKLIQEMP-FEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 726 ~~~l~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
...+.-++++.+|...+.+.+ ..| |+...|+-.-...-.|+...|.+..+.+++..|....+-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 455666778888888888774 333 344333333333345888899999999999888644433
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.70 E-value=3.3 Score=43.33 Aligned_cols=68 Identities=13% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCChhhHHHHHHhhhcCCChhhHHHHhcccCCCCh---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 002718 210 DKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNW---VSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGI 277 (888)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 277 (888)
+-|+.+|-.||.-|...|..++.++++++|..|-+ .+|..-+++-...+++.....+|.+........
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 35778899999999999999999999999988754 368888888888888988888888887765543
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=95.70 E-value=0.16 Score=53.57 Aligned_cols=124 Identities=11% Similarity=0.069 Sum_probs=92.9
Q ss_pred HHHHHHHHh--c---CCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-
Q 002718 687 ISVLRACAH--I---GLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGR---------SGQLNKALKLIQEM-PFEA- 749 (888)
Q Consensus 687 ~~ll~a~~~--~---g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~---------~g~~~~A~~~~~~~-~~~p- 749 (888)
..++.+..+ . ...+.|..+|.+......+.|+-. .|..+...+.. .....+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 445554443 2 245688899999987767788743 55555443321 23355677777766 4555
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 002718 750 DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 750 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
|+.....+..+....++++.|...++++..++|+.+.++...+++..-.|+.++|.+..+.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777777788899999999999999999999999999999999999999887665
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.69 E-value=0.02 Score=45.35 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHHcCCchHHHHHHHH
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQL----DPQ---DSSTYILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
+++.+...+...|+++.|+..+++++++ +++ -..++..+|++|...|++++|.+.++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555666666666666666666544 111 234566677777777777777666554
No 230
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=2.7 Score=47.24 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=46.8
Q ss_pred hhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002718 417 VANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAG 493 (888)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 493 (888)
+....|+.+.-.|++++|-.+.-.|...+..-|.--+..+...++......++ .......++..|-.++..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 45667777788888888888888888777777777776666666655433321 111112345566666666654
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=5 Score=44.97 Aligned_cols=328 Identities=11% Similarity=0.034 Sum_probs=177.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH-hCC-CCchhHHHHHHHHH
Q 002718 449 WNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIK-SGM-GSNLFVGSALIDMY 526 (888)
Q Consensus 449 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~-~~~~~~~~~li~~~ 526 (888)
-..+|+-+...+.+..|+++-..+...-..- ...|.....-..+..+. .-..+++.+.+ .+. -.....|..+..--
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDK-MDEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCc-cchHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 3456777778888888888877665432222 44444444444433221 11222222221 111 12334455566666
Q ss_pred HhcCCHHHHHHHHHhcCCC--------CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccH
Q 002718 527 CKCGMVEEAKKILKRTEER--------DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATV 598 (888)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 598 (888)
-.+|+.+-|..+++.=+.. +..-+..-+.-..+.|+.+-...++-.|... -+...|...+ .+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhc
Confidence 6788888888887654321 2223444555566667776666666655542 1111111111 233
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHH-HHhC-----CCCCHHHHHHHHHHHHhCCC---------
Q 002718 599 GLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIM-FEKS-----PKRDFVTWNAMICGYAHHGL--------- 663 (888)
Q Consensus 599 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~-----~~~~~~~~~~li~~~~~~g~--------- 663 (888)
..|..++.+..+..-. ..|-+.|-...+...+-.+ ++.. ..+-........+.+++...
T Consensus 589 p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 4455555555543111 1122222222222222111 1110 01111112222333333322
Q ss_pred -HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 002718 664 -GEEALKVFENMEL-ENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKL 741 (888)
Q Consensus 664 -~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~ 741 (888)
..+-+++++.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ .|+-..|---+.+|+..+++++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122233333332 2222333455556677888999999988876654 37777777778899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 742 IQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 742 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
-+++. .|.-|.-...+|.++|+.++|.+.+-++-.+ .-...+|.+.|++.+|.++--
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 88763 2556777888999999999998887665322 156778999999999987643
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=1 Score=38.42 Aligned_cols=141 Identities=9% Similarity=0.087 Sum_probs=85.2
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHH
Q 002718 658 YAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNK 737 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~ 737 (888)
....|..++..++..+...+ .+..-++.++--...+-+-+-..+.++.+-+-+.+.|-. ....++..|.+.|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH
Confidence 44568888888888887662 233334444433333444555666677665554444422 23445566666555443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 002718 738 ALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVR 817 (888)
Q Consensus 738 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 817 (888)
.....+++...+|.-+.-.+++..+.+.+..+|...+-++++|.+.|+..++.++++..=++|++
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445667778899999999999998766668999999999999999999999999988888875
No 233
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.53 E-value=0.022 Score=45.11 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 684 ATFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 684 ~t~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
.++..+..++...|++++|+.+|++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566666666666666666666654
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.45 E-value=1.4 Score=46.96 Aligned_cols=97 Identities=12% Similarity=0.195 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHH--HHHHHHHHHHH
Q 002718 688 SVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP--FEADDV--IWRTLLSICKI 763 (888)
Q Consensus 688 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p~~~--~~~~ll~~~~~ 763 (888)
.+..++.+.|+.+||++.|+.|.+++...........|+..|...+.+.++..++.+.. .-|... .|++.+--.+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34444555555555555555555433222222234455555555555555555555542 112222 23333322222
Q ss_pred hCC---------------HHHHHHHHHHHHhcCCCC
Q 002718 764 HGN---------------VEVAEEAASSLLQLDPQD 784 (888)
Q Consensus 764 ~g~---------------~~~a~~~~~~~~~~~p~~ 784 (888)
-++ -..|.++..++++.+|--
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 222 124667888888888843
No 235
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.44 E-value=0.1 Score=47.75 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=73.3
Q ss_pred HHHHhhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc
Q 002718 726 VDILGRSGQLNKALKLIQEM-P-FEA-----DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADA 798 (888)
Q Consensus 726 ~~~l~~~g~~~~A~~~~~~~-~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 798 (888)
.+-+.+.|++++|..-+..+ . +++ .++.|..-..+..+.+..+.|+....++++++|.+..+....+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34566778888887766654 1 222 3455666667788899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 002718 799 GMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 799 g~~~~a~~~~~~m~~~~~ 816 (888)
..+++|+.-++.+.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 999999999999887543
No 236
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.27 E-value=1.7 Score=44.69 Aligned_cols=241 Identities=11% Similarity=0.039 Sum_probs=121.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCC---CCcchHHHHHHHHhccCChhHHHHHHHHHH--Hh--CCC-CchhHHHHHHHH
Q 002718 454 AVQAQNGNEEETLFYFISMLHAIME---PDEFTYGSVLKACAGQQALNYGMQIHSRII--KS--GMG-SNLFVGSALIDM 525 (888)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 525 (888)
.-+++.|+....+.+|+..++.|-. .=+.+|..+-.+|.-.+++++|+++|..=+ .. |-. ........|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3467788888888888888876632 223455566667777778888888765421 11 100 011112223333
Q ss_pred HHhcCCHHHHHHHHHhcC-------CC--CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcc
Q 002718 526 YCKCGMVEEAKKILKRTE-------ER--DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLA 596 (888)
Q Consensus 526 ~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 596 (888)
+--.|.+++|.....+-. .+ ...++-.+...|...|+.-... --.+.|-.|+.++-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~----------- 169 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTS----------- 169 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHH-----------
Confidence 444556666544322111 00 1123333445554444321000 00011212222210
Q ss_pred cHHHHHHHHHH----HHHhCCC-CCcchhhhhccchhhcCCHHHHHHHHHhCC-------C--CCHHHHHHHHHHHHhCC
Q 002718 597 TVGLGMQLHAQ----IIKQEMQ-SDVYISSTLVDMYSKCGNVQDSRIMFEKSP-------K--RDFVTWNAMICGYAHHG 662 (888)
Q Consensus 597 ~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g 662 (888)
.++.|.+++.. +.+.|-. ..-..|..|.+.|.-.|+++.|+...+.-. . .....+..+.+++.-.|
T Consensus 170 al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg 249 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLG 249 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhc
Confidence 11222222221 1111111 123456667777777788888765443211 1 12246677788888888
Q ss_pred CHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002718 663 LGEEALKVFENMEL----ENVKP-NHATFISVLRACAHIGLVEKGLHYFNVM 709 (888)
Q Consensus 663 ~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 709 (888)
+++.|.+.|+.-.. .|-+. ......+|..+|.-...+++|+.++.+-
T Consensus 250 ~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 250 NFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred ccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888776433 22222 3345667777777777788888877654
No 237
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.24 E-value=3.4 Score=40.63 Aligned_cols=156 Identities=21% Similarity=0.222 Sum_probs=106.0
Q ss_pred hccchhhcCCHHHHHHHHHhCCC--CC-HHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHH
Q 002718 623 LVDMYSKCGNVQDSRIMFEKSPK--RD-FVTWNAMIC-GYAHHGLGEEALKVFENMELENVKP----NHATFISVLRACA 694 (888)
Q Consensus 623 li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~ 694 (888)
+...+...+....+.+.+..... ++ ...+..... .+...|+++.|...|++... ..| ....+......+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLE 178 (291)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHH
Confidence 33334444445555555554432 11 122222333 68888999999999998865 444 2334455555577
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHhCCHHHH
Q 002718 695 HIGLVEKGLHYFNVMLSDYSLHPQ--LEHYSCMVDILGRSGQLNKALKLIQEM-PFEAD-DVIWRTLLSICKIHGNVEVA 770 (888)
Q Consensus 695 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a 770 (888)
..++.+++...+...... .|. ...+..+...+...|++++|...+... ...|+ ...+..+...+...++.+.+
T Consensus 179 ~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 179 ALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 888999999999988743 333 567788888888899999999888877 34454 55666666666667789999
Q ss_pred HHHHHHHHhcCCC
Q 002718 771 EEAASSLLQLDPQ 783 (888)
Q Consensus 771 ~~~~~~~~~~~p~ 783 (888)
...+++.++..|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999986
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.18 E-value=0.65 Score=49.20 Aligned_cols=66 Identities=18% Similarity=0.104 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhc
Q 002718 645 KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNH----ATFISVLRACAHIGLVEKGLHYFNVMLSD 712 (888)
Q Consensus 645 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 712 (888)
+.+...|+.+..+|...|++++|+..|++.++ +.|+. .+|..+..+|.+.|+.++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999 78864 35999999999999999999999998853
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.10 E-value=0.44 Score=41.85 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=46.1
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHcCC
Q 002718 729 LGRSGQLNKALKLIQEM----PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS---TYILLSNIYADAGM 800 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~ 800 (888)
..+.|++++|.+.++.+ |..| ....--.|+.++.+.|+++.|...+++.+++.|.++. ++...|-++..+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 34556666666666655 2222 2234455677888888888888889999998887654 35555555555544
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.08 E-value=0.2 Score=43.55 Aligned_cols=48 Identities=29% Similarity=0.497 Sum_probs=29.4
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 002718 714 SLHPQLEHYSCMVDILGRSGQLNKALKLIQEM----PFEADDVIWRTLLSIC 761 (888)
Q Consensus 714 ~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~ 761 (888)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45566666666666666666666666666544 4444566666666533
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.23 Score=51.20 Aligned_cols=139 Identities=10% Similarity=-0.030 Sum_probs=96.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcC
Q 002718 654 MICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSG 733 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g 733 (888)
-.+.|.+.|++..|...|++.... -+ +...-+.++..... . .-...+..+.-.+.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 356789999999999999987652 11 11111112211111 1 11223556666777778
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHH-HHHHHH
Q 002718 734 QLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKL-SYTRRL 810 (888)
Q Consensus 734 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 810 (888)
++.+|++..++. ..+| |.-..---..+|...|+++.|+..|+++++++|.|-.+..-|+.+-.+...+++. .++|+.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777766 3444 4445555567888899999999999999999999999999999888888887776 778888
Q ss_pred HHhC
Q 002718 811 MRQN 814 (888)
Q Consensus 811 m~~~ 814 (888)
|-.+
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8543
No 242
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.99 E-value=0.91 Score=42.39 Aligned_cols=180 Identities=15% Similarity=0.111 Sum_probs=112.0
Q ss_pred hhhcCCHHHHHHHHHhCC--CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 002718 627 YSKCGNVQDSRIMFEKSP--KRD-FVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKG 702 (888)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 702 (888)
|-..|-+.-|+--|.... .|+ ...||-+.--+...|+++.|.+.|+...+ +.| ...++..-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444555666665555443 343 46788888888899999999999999988 677 445555555566678899888
Q ss_pred HHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 703 LHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 703 ~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
.+-|...-....-.|=...|- .+-.+.-++.+|..-+.+--..-|..-|+..+-.+.. |.+. -+.+++++.+-..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWL---Yl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~ 227 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWL---YLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADAT 227 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHH---HHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhcc
Confidence 877766543322222222222 2223445677776544433234566677776655432 2221 1333444443332
Q ss_pred C-------CcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 783 Q-------DSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 783 ~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+ -..+|..|+.-|...|+.++|..++|....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2 246899999999999999999999996654
No 243
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.96 E-value=3.4 Score=40.26 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=89.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHH--HHHHHHHHH
Q 002718 690 LRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKLIQEM----PFEADDVI--WRTLLSICK 762 (888)
Q Consensus 690 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~----~~~p~~~~--~~~ll~~~~ 762 (888)
+..-.+.|++++|.+.|+.+...+...|-.+ +.-.++.++-+.|++++|+..+++. |..||..- |-..+.-+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 3445678999999999999998888777654 5567778889999999999887765 66666542 333232222
Q ss_pred H-------hCCHHHHHHHHHHHHhcCCCCcc-----------------hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 763 I-------HGNVEVAEEAASSLLQLDPQDSS-----------------TYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 763 ~-------~g~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
. ..-...|...++.+++..|+..- .-...++.|.+.|.|..|..-++.|.+
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 1 12345677778888888897322 235678889999999999777776655
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.82 E-value=0.082 Score=33.49 Aligned_cols=33 Identities=33% Similarity=0.347 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002718 752 VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQD 784 (888)
Q Consensus 752 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 784 (888)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888899999999999999988864
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.75 E-value=0.86 Score=40.09 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKP----NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMV 726 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 726 (888)
+-.-.....+.|++++|.+.|+.+... -| ...+-..++.++.+.|++++|...+++.++-+.-.|++. |....
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~ 89 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYM 89 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHH
Confidence 333344556677777777777777764 23 224566677777777777777777777776555555433 33333
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc
Q 002718 727 DILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 727 ~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 786 (888)
.+|+.-...+. .+..+. ..=+-.+....|...|+.+++..|++.-
T Consensus 90 ~gL~~~~~~~~---~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 90 RGLSYYEQDEG---SLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHhhh---HHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 33332222211 111110 0111123456888889999999997543
No 246
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.67 E-value=0.069 Score=33.92 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002718 752 VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQD 784 (888)
Q Consensus 752 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 784 (888)
.+|..+...+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999998863
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.63 E-value=0.64 Score=46.84 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=22.8
Q ss_pred HcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhcCcccHHHHHH
Q 002718 558 SGAKRSEDAHKFFSYMLKM--GVKPDDFTYATLLDTCGNLATVGLGMQ 603 (888)
Q Consensus 558 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~ 603 (888)
.+..+.++|+..+.+-... ...--..++..+..+.++.|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666676666665442 111122345555555555555554443
No 248
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.55 E-value=0.47 Score=41.26 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHH
Q 002718 678 NVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDIL 729 (888)
Q Consensus 678 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 729 (888)
...|+..+..+++.+++..|++..|+++.+...+.|+++-....|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3668889999999999999999999999999999999887888888777543
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=0.3 Score=47.76 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH----ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-EHYSC 724 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~ 724 (888)
.|+.-+ .+.+.|++..|...|...++. -|+. ..+..|..++...|++++|..+|..+.+.++-.|.. +.+--
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 344443 345567788888888888774 4533 356677788888888888888888887777666654 45555
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 002718 725 MVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 725 l~~~l~~~g~~~~A~~~~~~~ 745 (888)
|+..+.+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 555555555555555444443
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=94.51 E-value=1.2 Score=40.26 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=53.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCH
Q 002718 657 GYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQL 735 (888)
Q Consensus 657 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~ 735 (888)
-+.+.|++++|..+|+-+.. ..| |..-+..|..+|-..+++++|+..|.....-..-.|.+ +-.+...+...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhCCH
Confidence 45567777777777777766 555 44555666666667777777777777654322223333 33355666667777
Q ss_pred HHHHHHHHhC
Q 002718 736 NKALKLIQEM 745 (888)
Q Consensus 736 ~~A~~~~~~~ 745 (888)
++|..-|+..
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 7777666654
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.37 E-value=8.1 Score=40.77 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=42.0
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHH
Q 002718 658 YAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYS 723 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 723 (888)
+..+|++.++.-.-..+.+ +.|+..+|..+.-+......+++|+.++..+ +|+...+.
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~d 529 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRD 529 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHH
Confidence 4567888888776666666 7888888888888888888888888888643 45555443
No 252
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.20 E-value=0.37 Score=46.72 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=85.0
Q ss_pred HHHHHHhCC--CCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------
Q 002718 636 SRIMFEKSP--KRDFVTWNAMICGYAHH-----GLGEEALKVFENMELENVKPNHATFISVLRACAHIG----------- 697 (888)
Q Consensus 636 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 697 (888)
..+.|..+. ++|-.+|-.++..+..+ +.++=....++.|.+-|+.-|..+|..|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355677666 67888898888888754 556777778899999999999999999998875543
Q ss_pred -----CHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHH-HHHHHHHhC
Q 002718 698 -----LVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLN-KALKLIQEM 745 (888)
Q Consensus 698 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~-~A~~~~~~~ 745 (888)
+-+=+++++++|. .+|+.||-++-..|+.+++|.|..- +...+.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345889999997 7799999999999999999998743 344444333
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=1.8 Score=42.98 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=86.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHHhCCH
Q 002718 691 RACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRT---LLSICKIHGNV 767 (888)
Q Consensus 691 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~ 767 (888)
......|+..+|...|+...... .-+.+.-..|+..|...|+.++|..++..+|.+-...-|.. -+.......+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 45667899999999999887432 22345667889999999999999999999986655444444 23334333333
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHH-HHHHH
Q 002718 768 EVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYT-RRLMR 812 (888)
Q Consensus 768 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~ 812 (888)
... ..++.-+..+|+|...-+.|+..|...|+.++|.+. +..|+
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 234555678999999999999999999999999665 44444
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=1.1 Score=43.85 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM----PFEA-DDVIWRTLL 758 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 758 (888)
.|+.-+. +.+.|++.+|...|...++.|.-.+ ....+--|...+...|++++|...|..+ |-.| -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444444 4566789999999988887654322 1223455777777777777777766655 2222 234455555
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
......|+.+.|...++++++..|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 56666677777777777777777765444
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.60 E-value=1.7 Score=39.00 Aligned_cols=94 Identities=18% Similarity=0.298 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDI 728 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 728 (888)
...|.++..|++.+ .++.++.++. .++......++..|.+.+.++++.-++.++. . +...++.
T Consensus 42 ~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~-~---------~~~Al~~ 104 (140)
T smart00299 42 ALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDG-N---------FKDAIVT 104 (140)
T ss_pred hHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhc-C---------HHHHHHH
Confidence 34555555555543 2333344432 1233334446667777777777777776653 1 2223344
Q ss_pred Hhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 002718 729 LGRS-GQLNKALKLIQEMPFEADDVIWRTLLSICK 762 (888)
Q Consensus 729 l~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 762 (888)
+... ++++.|.+++.+ ..++..|..++..|.
T Consensus 105 ~l~~~~d~~~a~~~~~~---~~~~~lw~~~~~~~l 136 (140)
T smart00299 105 LIEHLGNYEKAIEYFVK---QNNPELWAEVLKALL 136 (140)
T ss_pred HHHcccCHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 4433 677777777776 235667777776654
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.37 E-value=1.4 Score=37.48 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=53.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh--hHHHHHHHHHhhcC
Q 002718 657 GYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL--EHYSCMVDILGRSG 733 (888)
Q Consensus 657 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~l~~~g 733 (888)
+.+..|+.+.|++.|.+.+. +.| +...|+.-..++.-.|+.++|+.-+++..+-.|-.-.. ..|..-.-+|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45666777777777777776 566 55677777777777777777777777766543432111 12333334455566
Q ss_pred CHHHHHHHHHh
Q 002718 734 QLNKALKLIQE 744 (888)
Q Consensus 734 ~~~~A~~~~~~ 744 (888)
+.+.|..-|+.
T Consensus 130 ~dd~AR~DFe~ 140 (175)
T KOG4555|consen 130 NDDAARADFEA 140 (175)
T ss_pred chHHHHHhHHH
Confidence 66666655554
No 257
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.02 E-value=0.95 Score=50.00 Aligned_cols=192 Identities=15% Similarity=0.081 Sum_probs=117.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH----------hcCCHHHHHHHHHHhHhccCCCCCh
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKPN-HATFISVLRACA----------HIGLVEKGLHYFNVMLSDYSLHPQL 719 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----------~~g~~~~a~~~~~~m~~~~~~~p~~ 719 (888)
...+++...-.||-+.+++.+.+..+.+ ... ..+-..|+.-+. .....+.|.++++.+.+.| |+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 4456777778899999999998876632 222 222222322111 2456788999999998554 666
Q ss_pred hHHH-HHHHHHhhcCCHHHHHHHHHhCCC-C----C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchH-HHH
Q 002718 720 EHYS-CMVDILGRSGQLNKALKLIQEMPF-E----A-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTY-ILL 791 (888)
Q Consensus 720 ~~~~-~l~~~l~~~g~~~~A~~~~~~~~~-~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~-~~l 791 (888)
..|. --...+...|++++|++.++++-. + . ....+--+...+....++++|...+.++.+........| +..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 5543 334666778999999999997521 1 1 223344455566678899999999999999877655544 555
Q ss_pred HHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHH
Q 002718 792 SNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGE 857 (888)
Q Consensus 792 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~ 857 (888)
+-+|...|+.+++.+..+...+. .++.|+.. +++ .| ++-|--.-+.++.++....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l-~~~vp~l~-----~k~----~g-k~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEEL-FRKVPKLK-----QKK----AG-KSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHH-HHHHHHHH-----hhh----cc-CCCChHHHHHHHHHHHHhc
Confidence 66667778776665554444321 22334321 111 22 5556555555555554443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.92 E-value=6.6 Score=35.11 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHh
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILG 730 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~ 730 (888)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ .++.++.++. .++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3456777777888999999999998876 346667888888887653 4455555552 122223345677777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 002718 731 RSGQLNKALKLIQEMPFEADDVIWRTLLSICKIH-GNVEVAEEAASSLLQLDPQDSSTYILLSNIYA 796 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 796 (888)
+.|.++++.-++.+++. |...+..+..+ ++++.|.+.+++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 77888888888887652 22233333344 788888887776 234555555555443
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.91 E-value=1.4 Score=47.87 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=69.1
Q ss_pred HHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHH
Q 002718 422 LDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGM 501 (888)
Q Consensus 422 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 501 (888)
.+...++|+++.|.++.++.. +...|..|.+...+.|+.+-|.+.|.+..+ +..++-.+...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345567788888888877665 555888888888889999988888887654 455666666777777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 002718 502 QIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKR 541 (888)
Q Consensus 502 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 541 (888)
++.+.....| -+|....++.-.|+.++..+++.+
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7766666665 244455555566777776666643
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=21 Score=40.84 Aligned_cols=116 Identities=16% Similarity=-0.062 Sum_probs=65.0
Q ss_pred HHHHhhcCCChhHHHHHhccCCCCCCc---cHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCchhHhhHHHHhhhhhch
Q 002718 320 TLDMYAKCNNMSDAQKVFNSLPNCGLQ---SYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITLSGAFSACAVIAGY 396 (888)
Q Consensus 320 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 396 (888)
-++++++..-++-|..+-+.-...... .......-+.+.|++++|...|-+-... +.| ..+++-+.....+
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHH
Confidence 344555555555555555442221111 1222334456678888888777665432 222 2344444444555
Q ss_pred hhHHHHHHHHHHhcCCCchhhhHHHHHhhhccCChHHHHHHHhhcC
Q 002718 397 LEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEME 442 (888)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 442 (888)
..-..++..+.+.|+.... .-+.|+..|.+.++.++-.++.+...
T Consensus 414 knLt~YLe~L~~~gla~~d-httlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSD-HTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHcccccch-hHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555566666667665433 33678888888888888777776655
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.63 E-value=1.8 Score=47.01 Aligned_cols=133 Identities=23% Similarity=0.268 Sum_probs=86.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcC
Q 002718 656 CGYAHHGLGEEALKVFENMELENVKP--NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSG 733 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g 733 (888)
......|+++++.++.+.-. +-| ...-...++.-+.+.|..+.|+++-+.-.. -.++..+.|
T Consensus 269 k~av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcC
Confidence 44556788888777664111 222 234467777888889999999877654322 246677899
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 734 QLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 734 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+++.|.++.++.. ++..|..|......+||++.|+..++++-. +..|.-+|...|+-+.-.++-+....
T Consensus 333 ~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999998877643 788999999999999999999999988643 45677778888887666666555444
Q ss_pred CC
Q 002718 814 NK 815 (888)
Q Consensus 814 ~~ 815 (888)
+|
T Consensus 402 ~~ 403 (443)
T PF04053_consen 402 RG 403 (443)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=8.1 Score=37.17 Aligned_cols=197 Identities=12% Similarity=0.084 Sum_probs=97.9
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCCCCCH--HHHHHHHHHHHhCCCHH
Q 002718 588 LLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDF--VTWNAMICGYAHHGLGE 665 (888)
Q Consensus 588 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~ 665 (888)
.-.++....+++.+...+....+. .+.+... +-....++.|.-+.+++.+-+. ..|+--...|..+|..+
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrsl-------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSL-------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 334555666666666655544431 1111111 1122233444444444443322 34556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccC----CCCChhHHHHHHHHHhhcCCHHHHHHH
Q 002718 666 EALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYS----LHPQLEHYSCMVDILGRSGQLNKALKL 741 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l~~~l~~~g~~~~A~~~ 741 (888)
.|-..+++.-. ....-+.++|+++|++...... ..--.+.|.....+|.|..+++||-..
T Consensus 109 tAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 109 TAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred hHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 66666655432 1122233344444443322111 111123345556677788888877766
Q ss_pred HHhCC-----CCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 742 IQEMP-----FEADDVI---WRTLLSICKIHGNVEVAEEAASSLLQL----DPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 742 ~~~~~-----~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
+.+-. +..-+.. +-+.+-.+.-..|+..|++.++.--+. .|++..+...|...| ..|+.|++.++..
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 65542 1221222 333333444456888888888876554 355666666665544 5667777666543
No 263
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.40 E-value=0.48 Score=47.23 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=62.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHhC
Q 002718 689 VLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEMP-FEA-DDVIWRTLLSICKIHG 765 (888)
Q Consensus 689 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 765 (888)
-..-|.+.|.+++|+.+|.... .+.| ++..+..-..+|.+..++..|+.-.+..- +.. -.-.|.--..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888766 4455 66666667777888888777665544431 110 1123444444445567
Q ss_pred CHHHHHHHHHHHHhcCCCCcc
Q 002718 766 NVEVAEEAASSLLQLDPQDSS 786 (888)
Q Consensus 766 ~~~~a~~~~~~~~~~~p~~~~ 786 (888)
+..+|.+-++.+++++|++..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888888888887433
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.37 E-value=30 Score=41.43 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=68.1
Q ss_pred hhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002718 628 SKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFN 707 (888)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 707 (888)
-+.|.+.+|..++..-.+.-...|.+...-+...+.+++|.-.|+..=. ..-.+.+|...|+|++|+.+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3444455555444322222222333334444445666666666554321 1223556777777777777776
Q ss_pred HhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHHhCCHHHHHHHH
Q 002718 708 VMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEA--------DDVIWRTLLSICKIHGNVEVAEEAA 774 (888)
Q Consensus 708 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~ 774 (888)
++.. +-.--..+--.|+..+..++++-||-++..+..-.| +...|.-.+..+..+++.+.-+...
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l 1062 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVL 1062 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHH
Confidence 6641 111111223556677777777777777776664333 2333444455555555444433333
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=4 Score=40.96 Aligned_cols=174 Identities=13% Similarity=0.122 Sum_probs=101.3
Q ss_pred cCCHHHHHHHHHhCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHH
Q 002718 630 CGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFI----SVLRACAHIGLVEKG 702 (888)
Q Consensus 630 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~----~ll~a~~~~g~~~~a 702 (888)
.|+..+|-..++++. +.|..+|+---.+|.-.|+.+.-...+++..-. ..||...|. .+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 466666666666655 567778888788888888888877778777653 245553322 223355677888888
Q ss_pred HHHHHHhHhccCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCC-----CHHHHHHHHHHHHHhCCHHHHHHHH
Q 002718 703 LHYFNVMLSDYSLHPQ-LEHYSCMVDILGRSGQLNKALKLIQEMP--FEA-----DDVIWRTLLSICKIHGNVEVAEEAA 774 (888)
Q Consensus 703 ~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~ 774 (888)
.+.-++.. .+.|. .-.-.++...+.-.|++.|+.+++.+-. .+. ...-|...+ .+...+.++.|+.+|
T Consensus 195 Ek~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHH
Confidence 88777766 34442 2233456666777888888888887653 111 111233222 223446788888888
Q ss_pred HHHHh--cCCCCcchHH---HHHHHHHHcCCchHHHHHH
Q 002718 775 SSLLQ--LDPQDSSTYI---LLSNIYADAGMWDKLSYTR 808 (888)
Q Consensus 775 ~~~~~--~~p~~~~~~~---~l~~~~~~~g~~~~a~~~~ 808 (888)
++=+- ++.+|..+.. -+--+......|.+-.++-
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la 309 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLA 309 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhh
Confidence 76443 3344543322 2333444444444444333
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.99 E-value=11 Score=39.77 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---Ccc----cHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002718 521 ALIDMYCKCGMVEEAKKILKRTEER---DVV----SWNAIISGFSG---AKRSEDAHKFFSYMLKMGVKPDDFTYATLLD 590 (888)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 590 (888)
.++-.|....+++.-.++.+.+... +.. .-....-++.+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577777777777777777643 111 11123334555 7788888888888666555677777766655
Q ss_pred Hh
Q 002718 591 TC 592 (888)
Q Consensus 591 a~ 592 (888)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.86 E-value=20 Score=38.16 Aligned_cols=147 Identities=13% Similarity=0.009 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhc-cCCCCChhH
Q 002718 646 RDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP---NHATFISVLRACAHIGLVEKGLHYFNVMLSD-YSLHPQLEH 721 (888)
Q Consensus 646 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 721 (888)
....+|..++..+.++|.++.|...+.++...+..+ +......-+...-..|+..+|+..++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344678888899999999999999998887743222 2334444455666778889998888877641 111101111
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCCCCcchHHH
Q 002718 722 YSCMVDILGRSGQLNKALKLIQEMP-----FEADDVIWRTLLSICKIH------GNVEVAEEAASSLLQLDPQDSSTYIL 790 (888)
Q Consensus 722 ~~~l~~~l~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~ 790 (888)
...+...+.. .......-. .+.-..++..+..-+... ++.+.+...++++.+..|....++..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111111000 000000000 000012233333333333 78899999999999999988888888
Q ss_pred HHHHHHHc
Q 002718 791 LSNIYADA 798 (888)
Q Consensus 791 l~~~~~~~ 798 (888)
++..+...
T Consensus 298 ~a~~~~~~ 305 (352)
T PF02259_consen 298 WALFNDKL 305 (352)
T ss_pred HHHHHHHH
Confidence 88776544
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.84 E-value=4.5 Score=41.13 Aligned_cols=128 Identities=19% Similarity=0.125 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhH---hccCCCCChhHHHH
Q 002718 653 AMICGYAHHGLGEEALKVFENMELENV---KP--NHATFISVLRACAHIGLVEKGLHYFNVML---SDYSLHPQLEHYSC 724 (888)
Q Consensus 653 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ 724 (888)
+|..++.-.+.++++++.|+....-.- .| .-..+..|.+.+.+..++++|.-+..+.. ..+++.....-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 356666667778888888877655211 12 22478888888888888888877666543 23344433333333
Q ss_pred -----HHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 725 -----MVDILGRSGQLNKALKLIQEM-------PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 725 -----l~~~l~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
|.-+|...|++-+|.+..++. +.+| .......+.+.|+..|+.|.|..-++.+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 334555666665555555543 3333 3445677888899999999988888887654
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.83 E-value=35 Score=40.94 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=45.0
Q ss_pred HHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcch--HHHHHHHHhccCChh
Q 002718 421 ILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFT--YGSVLKACAGQQALN 498 (888)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~ 498 (888)
..-+|.++|+.++|++.+. ..|+|.+|+.+-.+|... -|... --.|..-+...++.-
T Consensus 958 Aal~Ye~~GklekAl~a~~------------------~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYK------------------ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHhccHHHHHHHHH------------------HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 3445666666666665543 446666666666554321 11111 123334444445444
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 002718 499 YGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTE 543 (888)
Q Consensus 499 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 543 (888)
+|-++..+.... ..-.+..|++...+++|..+-....
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 444444333211 1223444666666777766654443
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.72 E-value=5.7 Score=35.84 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=45.9
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHhCCHHH
Q 002718 692 ACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKLIQEMP-FEADDVIWRTLLSICKIHGNVEV 769 (888)
Q Consensus 692 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 769 (888)
.-.+.++.+++..++..+. -+.|... +-..-+..+.+.|++.+|..+++++. -.|....-.+|+..|.....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 3344556666666666555 3344322 22233444556666666666666662 33444455566666655433333
Q ss_pred HHHHHHHHHhcCC
Q 002718 770 AEEAASSLLQLDP 782 (888)
Q Consensus 770 a~~~~~~~~~~~p 782 (888)
=...++++++.+|
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 3445555666555
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.67 E-value=0.52 Score=32.06 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH 683 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 683 (888)
+|..+...|...|++++|.++|++..+ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 466677777777777777777777777 56633
No 272
>PRK09687 putative lyase; Provisional
Probab=91.55 E-value=18 Score=36.93 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 666 EALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
.+...+..+.. .+|...-...+.++.+.|. .+++..+-...+. ++ .....+.+++..|.. +|...+..+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 44444444442 3444444444555555554 3344444333321 11 122344455555543 344444443
Q ss_pred -CCCCCHHHHHHHHHHH
Q 002718 746 -PFEADDVIWRTLLSIC 761 (888)
Q Consensus 746 -~~~p~~~~~~~ll~~~ 761 (888)
.-.||..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 2233444444433333
No 273
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.43 E-value=5 Score=44.71 Aligned_cols=191 Identities=17% Similarity=0.301 Sum_probs=114.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHhcCcccHHHHHHHHHHHHHh-C-CCCCc
Q 002718 550 WNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDF----------TYATLLDTCGNLATVGLGMQLHAQIIKQ-E-MQSDV 617 (888)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~~ 617 (888)
-..++-.|....+++..+++.+.+++. ||.. .|...++---+-|+-++|....--+.+. | +.|
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap-- 278 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP-- 278 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC--
Confidence 344556666777777777777777653 3221 2333333334567777887776666554 2 223
Q ss_pred chhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHH
Q 002718 618 YISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA---TFISVLRACA 694 (888)
Q Consensus 618 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~ 694 (888)
++||-||++ |+.|. +-+.|-..+..+.|.++|++..+ +.|+.. .+..|+.+-.
T Consensus 279 -------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 279 -------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred -------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh
Confidence 578888874 33332 11235555667889999999888 788664 3444544432
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 002718 695 HIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAA 774 (888)
Q Consensus 695 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 774 (888)
+ .++.-.++ +.+ | -.|-.+++|.|.++.-.++++- ...+.+....+|+.+|..++
T Consensus 335 ~--~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAa 389 (1226)
T KOG4279|consen 335 E--HFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAA 389 (1226)
T ss_pred h--hccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHH
Confidence 2 11111111 111 1 2345678999998887777653 23555666778999999999
Q ss_pred HHHHhcCCCCcchHHHHHHH
Q 002718 775 SSLLQLDPQDSSTYILLSNI 794 (888)
Q Consensus 775 ~~~~~~~p~~~~~~~~l~~~ 794 (888)
+.++++.|...-.-..+.++
T Consensus 390 e~mfKLk~P~WYLkS~meni 409 (1226)
T KOG4279|consen 390 EMMFKLKPPVWYLKSTMENI 409 (1226)
T ss_pred HHHhccCCceehHHHHHHHH
Confidence 99999988544433344444
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.15 E-value=0.073 Score=48.15 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhCCCCchhHHhHHHHHhhcCCChhHHHHHhccCCCCCCccHHHHHHHHHhCCChhHH
Q 002718 285 ILRSCAALSNLKLGTQLHAHALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEA 364 (888)
Q Consensus 285 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 364 (888)
+++.+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666667777777777777766667788889999999999888888888874332 4445667777777777777
Q ss_pred HHHHHHHH
Q 002718 365 LQLFRLLQ 372 (888)
Q Consensus 365 ~~~~~~m~ 372 (888)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77776653
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.13 E-value=2.1 Score=42.72 Aligned_cols=77 Identities=9% Similarity=0.220 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh----ccCCCCChhHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLS----DYSLHPQLEHYS 723 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~ 723 (888)
.++..++..+...|+.+.+.+.++++.. ..| |...|..++.+|.+.|....|+..|+++.+ +.|+.|......
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567778888888888888888888888 677 778888888888888888888888887753 446666665544
Q ss_pred HHHH
Q 002718 724 CMVD 727 (888)
Q Consensus 724 ~l~~ 727 (888)
....
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4333
No 276
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.04 E-value=35 Score=39.47 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHH
Q 002718 662 GLGEEALKVFENMELEN-VKPNH--ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKA 738 (888)
Q Consensus 662 g~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A 738 (888)
.+.+.|..++.+..... ..+.. .....+.......+..+++...+...... ..+.....--+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 34566666666553322 22222 12233332222322244555555443211 11222222233333366666666
Q ss_pred HHHHHhCCCC-CCHHHHHHHH-HHHHHhCCHHHHHHHHHHH
Q 002718 739 LKLIQEMPFE-ADDVIWRTLL-SICKIHGNVEVAEEAASSL 777 (888)
Q Consensus 739 ~~~~~~~~~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~ 777 (888)
...+..|+-. .+..-|.-.+ .+....|+.+.|...++++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666311 1222233332 2434456666666666665
No 277
>PRK12798 chemotaxis protein; Reviewed
Probab=91.01 E-value=23 Score=37.37 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=118.1
Q ss_pred cCCHHHHHHHHHhCC----CCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHH
Q 002718 630 CGNVQDSRIMFEKSP----KRDFVTWNAMICGY-AHHGLGEEALKVFENMELENVKPNH----ATFISVLRACAHIGLVE 700 (888)
Q Consensus 630 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 700 (888)
.|+.++|.+.+..+. ++....+-.|+.+- ....+..+|+++|++..- ..|-. .....-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 688888888888777 34556777777664 455789999999999887 57743 34555566778999999
Q ss_pred HHHHHHHHhHhccCCCCChhHH-HHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002718 701 KGLHYFNVMLSDYSLHPQLEHY-SCMVDILGRSG---QLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASS 776 (888)
Q Consensus 701 ~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 776 (888)
++..+-.+....|...|=...| ..++..+.+.+ ..+.-..++..|.-+-...+|-.+...-...|+.+.|.-+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9988888887777777765544 23333444333 3444455555554333455787777778889999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHH-----cCCchHHHHHH
Q 002718 777 LLQLDPQDSSTYILLSNIYAD-----AGMWDKLSYTR 808 (888)
Q Consensus 777 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~ 808 (888)
++.+.+ ....-...+++|.. ..+.+++.+..
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L 318 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEEL 318 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHH
Confidence 999963 23333344444443 23455554433
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.96 E-value=2.1 Score=42.89 Aligned_cols=159 Identities=13% Similarity=0.027 Sum_probs=117.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHH----HHHHHHHhhcC
Q 002718 659 AHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY----SCMVDILGRSG 733 (888)
Q Consensus 659 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----~~l~~~l~~~g 733 (888)
.-.|+..+|-..++++.+. .| |...+.-.=.+|.-.|+.+.-...++++..+ -.|+...| ..+...+...|
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 4578888999999999884 55 7788888888999999999999999988743 34555443 34456677899
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHcCCchHHHHH
Q 002718 734 QLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ----DSSTYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 734 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~ 807 (888)
-+++|++..++. .+.| |.-.-.+........|+.+++.+..++--..=.+ -...|.+.+-.|.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999887 4555 4455666777788889999999888775433111 344677888888899999999999
Q ss_pred HHHHHhCCCccCCC
Q 002718 808 RRLMRQNKVRKEPG 821 (888)
Q Consensus 808 ~~~m~~~~~~~~~~ 821 (888)
+..---+.+.|..+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 87543334555554
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.95 E-value=3.2 Score=44.30 Aligned_cols=189 Identities=12% Similarity=0.060 Sum_probs=91.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHH---
Q 002718 660 HHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLN--- 736 (888)
Q Consensus 660 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~--- 736 (888)
+..+...-++.-++..+ +.||-.+-..++ +-..+..+.++.++|++..+... ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhccc
Confidence 34455555666666666 677664433332 22344567788888877653210 0011110000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 737 KALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ--DSSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 737 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
...+.+.+-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-..+..|.+.+...+++.|+..+..+=.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 01111111112222333344555566667777777777777766553 4456666777777777777776666544332
Q ss_pred CCccCCCeeEEEECCEEEEE-eeCCCCCCC-------hHHHHHHHHHHHHHHHHcCCCCC
Q 002718 815 KVRKEPGCSWIGVNDKVHTF-LVRDKDHPK-------CEEIYEKLGLLIGEMKWRGCASD 866 (888)
Q Consensus 815 ~~~~~~~~s~i~~~~~~~~f-~~~~~~~~~-------~~~i~~~l~~l~~~~~~~g~~~~ 866 (888)
...|....+|-.. .-.| ..+|+..|+ +......++.+.+.++..-+||+
T Consensus 325 ~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 325 SLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred cCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 2222222111000 0000 112222221 12233456777777877788887
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.86 E-value=0.45 Score=30.01 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
+|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888874
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.86 E-value=1.3 Score=43.14 Aligned_cols=99 Identities=17% Similarity=0.182 Sum_probs=75.8
Q ss_pred HHHHHHhhcC--CCCeeeHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhcc-----------
Q 002718 433 EACHVFDEME--RRDAVSWNAIIAVQAQN-----GNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQ----------- 494 (888)
Q Consensus 433 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 494 (888)
..+..|.... ++|-.+|-+++..+... +..+-....++.|.+.|+.-|..+|..+|..+-+.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4455666666 56777888888777653 55667777889999999999999999999887543
Q ss_pred -----CChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 002718 495 -----QALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGM 531 (888)
Q Consensus 495 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 531 (888)
..-+-++.++++|...|+-||-.+-..|++++.+.+.
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2335677888888888888888888888888877664
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.66 E-value=0.96 Score=45.20 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=65.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhc
Q 002718 654 MICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRS 732 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~ 732 (888)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..-.+..+.- -...+.+|.|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR 171 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRR 171 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHH
Confidence 35679999999999999999888 789 9999999999999999998887777666521 12334555554
Q ss_pred -------CCHHHHHHHHHhC-CCCCCHHHH
Q 002718 733 -------GQLNKALKLIQEM-PFEADDVIW 754 (888)
Q Consensus 733 -------g~~~~A~~~~~~~-~~~p~~~~~ 754 (888)
|...||.+-++.. .++|+..-+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 5556665555544 577875443
No 283
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.58 E-value=31 Score=38.08 Aligned_cols=183 Identities=16% Similarity=0.081 Sum_probs=125.1
Q ss_pred cchhhhhccchhhcCCHHHHHHHHHhCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002718 617 VYISSTLVDMYSKCGNVQDSRIMFEKSPKRD---FVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRAC 693 (888)
Q Consensus 617 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 693 (888)
..+|..-++.-.+.|+.+.+..+|++..-|= ...|-..+.-....|+.+-|..++....+--.+-...+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 4566667777778888888888888776432 2356555555556688888887777666542222334433344456
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHH----H-HHHH
Q 002718 694 AHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKAL---KLIQEM-PFEADDVIWRTLL----S-ICKI 763 (888)
Q Consensus 694 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll----~-~~~~ 763 (888)
...|+.+.|..+++.+.+++ |+.. .-..-+....|.|..+.+. +++... +...+..+...+. . -+..
T Consensus 377 e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 77899999999999998754 6543 2233456677889988888 555544 2333333333222 1 2345
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCch
Q 002718 764 HGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWD 802 (888)
Q Consensus 764 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 802 (888)
.++.+.|..++.++.+..|++...|..+.++....+-..
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 689999999999999999999999999999988887433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.54 E-value=0.37 Score=31.03 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 787 TYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 787 ~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
++..|+++|.+.|+|++|.++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4778999999999999999998863
No 285
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.28 E-value=11 Score=41.85 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=99.1
Q ss_pred hhhhhccchhhcCCHHHHHHHHHhCC-CCCHH---HHHHHHH------HHH----hCCCHHHHHHHHHHHHHCCCCCCHH
Q 002718 619 ISSTLVDMYSKCGNVQDSRIMFEKSP-KRDFV---TWNAMIC------GYA----HHGLGEEALKVFENMELENVKPNHA 684 (888)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~---~~~~li~------~~~----~~g~~~~A~~~~~~m~~~g~~p~~~ 684 (888)
....++...+=.|+-+.+.+.+.... ..++. +--.|+. .++ ...+.+.|.++++++.+ ..|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcH
Confidence 44567777888899999999887765 33332 2112221 111 24567889999999999 589887
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHhHhccCCCCChhH--HHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 002718 685 TFISV-LRACAHIGLVEKGLHYFNVMLSDYSLHPQLEH--YSCMVDILGRSGQLNKALKLIQEMP-FEA-DDVIWRTLLS 759 (888)
Q Consensus 685 t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~l~~~l~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~ 759 (888)
.|... .+.+...|++++|++.|+.......--|...+ +--++..+.-.+++++|.+.+..+. ... ...+|..+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 66544 45778899999999999986632222333333 4456677888999999999999884 222 4556666666
Q ss_pred HHH-HhCCH
Q 002718 760 ICK-IHGNV 767 (888)
Q Consensus 760 ~~~-~~g~~ 767 (888)
+|. ..|+.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 554 45666
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.25 E-value=14 Score=33.57 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=86.1
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-HHHH--HHHHHhhcC
Q 002718 658 YAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLE-HYSC--MVDILGRSG 733 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~--l~~~l~~~g 733 (888)
+++.+..++|+.-|..+...|...=+ -.-........+.|+...|...|+.+-.+..+ |... -..- -..+|...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 46778889999999999988765533 23444455677889999999999998755332 3222 1222 234677889
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 002718 734 QLNKALKLIQEMPFEAD---DVIWRTLLSICKIHGNVEVAEEAASSLLQ 779 (888)
Q Consensus 734 ~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 779 (888)
-+++....++-+..+.+ ...-.+|.-+-.+.|++..|...|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99998888887743333 33456676677899999999999998876
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.06 E-value=2.1 Score=38.54 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=38.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCc
Q 002718 731 RSGQLNKALKLIQEM-PFEADDVIWRTLL-SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMW 801 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 801 (888)
+.++.+++..++..+ .+.|.......+- ..+..+|++..|+.+++.+.+..|..+..--+++.++...|+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 455666666666655 2455433332222 2344556666666666666555565555555666666555543
No 288
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.61 E-value=8.9 Score=36.91 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=82.8
Q ss_pred hccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCH---HHHHHHHHHHHhcC
Q 002718 623 LVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVK--PNH---ATFISVLRACAHIG 697 (888)
Q Consensus 623 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~---~t~~~ll~a~~~~g 697 (888)
-..+|..+|.++.|-..+++.- -....-++++|+++|++...-=.. -+. ..+..+.+.+.+..
T Consensus 97 As~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 3456888888777765555432 122344567777777765442001 111 13444555677788
Q ss_pred CHHHHHHHHHHhHh---ccCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC---C--CC-CCHHHHHHHHHHHHHhCCH
Q 002718 698 LVEKGLHYFNVMLS---DYSLHPQL-EHYSCMVDILGRSGQLNKALKLIQEM---P--FE-ADDVIWRTLLSICKIHGNV 767 (888)
Q Consensus 698 ~~~~a~~~~~~m~~---~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~---~--~~-p~~~~~~~ll~~~~~~g~~ 767 (888)
++++|-..|.+-.. ...-.|+. ..|-..|-.+.-..++..|.+.++.. | .. .+..+...||.+| ..||.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 88887766654321 11111222 23445555666778999999999984 2 22 2567889999998 67888
Q ss_pred HHHHHHHH
Q 002718 768 EVAEEAAS 775 (888)
Q Consensus 768 ~~a~~~~~ 775 (888)
+....++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 88766653
No 289
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.53 E-value=0.37 Score=43.46 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHhhccCCCchhHHHHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCCCCcchhhHHHHHHHhcCchhH
Q 002718 51 RIFQELTHDQAQNPGKQAHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGI 130 (888)
Q Consensus 51 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 130 (888)
.+++.+.+.+.+......++.++..+...+....+.++..|++.+..+...++++.... +-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777788888888999998877777888999999999999988999988884433 444556666666666666
Q ss_pred HHHhhhhCCC
Q 002718 131 ARTLFEAMPE 140 (888)
Q Consensus 131 A~~~~~~~~~ 140 (888)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 6666666543
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.37 E-value=0.66 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888888888888886554
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.36 E-value=19 Score=33.68 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHH-----HHHHHHhhcCCHHHH
Q 002718 666 EALKVFENMELENVKPNHATFI--SVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYS-----CMVDILGRSGQLNKA 738 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~l~~~l~~~g~~~~A 738 (888)
+.....+++...+-.....++. .+...+...|++++|...++..... |..+.+. .|...+...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455556665532111222232 3345678889999999988877632 3333343 345667788999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 739 LKLIQEMPFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 739 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
++.++...-+. .+..-..-.+++...|+-+.|+..++++++.+++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99988754221 2333444456788899999999999999998754
No 292
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.11 E-value=33 Score=36.30 Aligned_cols=143 Identities=16% Similarity=0.173 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHH-H
Q 002718 646 RDFVTWNAMICGYAHHGLGEEALKVFENMELEN-VKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY-S 723 (888)
Q Consensus 646 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~ 723 (888)
+=...|...++.-.+..-.+.|..+|-+....| +.|+...+++.+.-++ .|+..-|..+|+.=...+ ||...| .
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHH
Confidence 334678888888888888899999999999988 4557778888887654 578888999998765444 444444 3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 002718 724 CMVDILGRSGQLNKALKLIQEM--PFEAD--DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLS 792 (888)
Q Consensus 724 ~l~~~l~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 792 (888)
-..+-+.+-++-+.|..+|+.. .++.+ ..+|..++.--...|++..+..+-++..++.|+....-+.++
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 4566778889999999999866 23444 568999999888999999999999999999997544444443
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.91 E-value=2.7 Score=37.15 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 764 HGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 764 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
.++.+.++.+++.+--+.|+.+..-..-++++...|+|+||.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 456666666666666666666666666666666666666666666655443
No 294
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.45 E-value=16 Score=31.64 Aligned_cols=63 Identities=6% Similarity=0.072 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC
Q 002718 550 WNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEM 613 (888)
Q Consensus 550 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 613 (888)
...-++.....|+-+.--+++.++.+. -.+++.....+..||.+.|+..++.+++..+.+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344566777888888888888887763 377788888888899999999999999988888875
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=20 Score=34.38 Aligned_cols=150 Identities=11% Similarity=0.139 Sum_probs=74.7
Q ss_pred chhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCCCCH-HHHHHHHHHHHhcCCHH
Q 002718 626 MYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENME----LENVKPNH-ATFISVLRACAHIGLVE 700 (888)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~-~t~~~ll~a~~~~g~~~ 700 (888)
.++-.+.+++|.++|.+.. +.|-...+|..|=..|.+.- +.|-+-|. .||.-... |.+.++++
T Consensus 23 lfgg~~k~eeAadl~~~Aa-----------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~ 90 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA-----------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPE 90 (288)
T ss_pred ccCCCcchHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChH
Confidence 4555668888888887654 12222222333322222221 22223333 34444444 34445777
Q ss_pred HHHHHHHHhHhcc----CCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHHhCCH
Q 002718 701 KGLHYFNVMLSDY----SLHPQLEHYSCMVDILGRS-GQLNKALKLIQEMP-----FEADDVIWRTLLSI---CKIHGNV 767 (888)
Q Consensus 701 ~a~~~~~~m~~~~----~~~p~~~~~~~l~~~l~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~---~~~~g~~ 767 (888)
+|...++..++.+ ...--..++-.+.+.|... .++++|+..++... -+.++..-..++.+ -...+++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 7776666554221 1111222344555666544 56677777776652 22333334444432 1234677
Q ss_pred HHHHHHHHHHHhcCCCCcch
Q 002718 768 EVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 768 ~~a~~~~~~~~~~~p~~~~~ 787 (888)
.+|+.+++++-.-.-+++-.
T Consensus 171 ~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHhccchHH
Confidence 88888888877665544443
No 296
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.22 E-value=27 Score=34.13 Aligned_cols=241 Identities=14% Similarity=0.192 Sum_probs=137.1
Q ss_pred cCCHHHHHHHHHhcCC----C---CcccHHHHHHHHHcCCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHhcCcc
Q 002718 529 CGMVEEAKKILKRTEE----R---DVVSWNAIISGFSGAKRSEDAHKFFSYMLKM---GV--KPDDFTYATLLDTCGNLA 596 (888)
Q Consensus 529 ~g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~ 596 (888)
...+++|+.-|+++.+ + ...+...+|..+.+.+++++.++.+++|... .+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456666666665542 1 1223445677778888888888777777531 11 234456677777666666
Q ss_pred cHHHHHHHHHHHHHh-----CCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--------CCC-------HHHHHHHHH
Q 002718 597 TVGLGMQLHAQIIKQ-----EMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--------KRD-------FVTWNAMIC 656 (888)
Q Consensus 597 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~-------~~~~~~li~ 656 (888)
+.+.-.++++.-++. +-..-..+-+-|...|...|.+..-.++++++. ..| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666665555544332 111222334556677777777777766666543 011 235666678
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHhHhccCC--CCChh---HHHHHH
Q 002718 657 GYAHHGLGEEALKVFENMELENVKPNHATFISVLRAC-----AHIGLVEKGLHYFNVMLSDYSL--HPQLE---HYSCMV 726 (888)
Q Consensus 657 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-----~~~g~~~~a~~~~~~m~~~~~~--~p~~~---~~~~l~ 726 (888)
.|....+-.+-..+|++...-.-..-+.....+++-| .+.|.+++|..-|-+.-+.|.- .|... -|..|.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 8888888777788888776522222333455666655 4678888887655444444432 23322 366677
Q ss_pred HHHhhcCC----HHHHHHHHHhCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 727 DILGRSGQ----LNKALKLIQEMPFE--ADDVIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 727 ~~l~~~g~----~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
+++.+.|- -.||. |.+ |.......|+.+|.. +++.. |++++..
T Consensus 280 NMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~-NdI~e----FE~Il~~ 328 (440)
T KOG1464|consen 280 NMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQN-NDIIE----FERILKS 328 (440)
T ss_pred HHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhc-ccHHH----HHHHHHh
Confidence 77777762 11221 333 444567888888854 44443 4444443
No 297
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.03 E-value=48 Score=36.74 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH-
Q 002718 683 HATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP--FEADDVIWRTLLS- 759 (888)
Q Consensus 683 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~- 759 (888)
..+|...+.--...|+.+...-+|++..- .+.-=.+.|--.+.-....|+.+-|..++.... ..|+......+-.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35777778877888888888888887752 122223345556666666688888877766552 2333333322222
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHH
Q 002718 760 ICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSY 806 (888)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 806 (888)
.+-..||.+.|..+++++.+--|.....-..-.+.....|+.+.+..
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 34445799999999999988778877777777888888888888874
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.76 E-value=1.3 Score=27.86 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPN 682 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 682 (888)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 456666666666666666666666666 4453
No 299
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.48 E-value=62 Score=37.43 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=14.7
Q ss_pred HhhcCCHHHHHHHHHhCCCCC
Q 002718 729 LGRSGQLNKALKLIQEMPFEA 749 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~~~~p 749 (888)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457888888888888887666
No 300
>PRK09687 putative lyase; Provisional
Probab=87.35 E-value=36 Score=34.66 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=35.4
Q ss_pred CchhhhHHHHHhhhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 002718 413 SNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKAC 491 (888)
Q Consensus 413 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 491 (888)
++..+-...+.++++.|+......+.+.+..++ ..-..+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 344444555555555555433333333333323 233455556666654 466666666552 23555444444444
No 301
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.09 E-value=24 Score=32.35 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=9.9
Q ss_pred HHHhhhccCChHHHHHHHhhc
Q 002718 421 ILDMYGKCQDVIEACHVFDEM 441 (888)
Q Consensus 421 li~~~~~~g~~~~A~~~~~~~ 441 (888)
+++.+...|++-+|.+..+..
T Consensus 95 iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHc
Confidence 334444445555555554443
No 302
>PRK10941 hypothetical protein; Provisional
Probab=87.03 E-value=4.4 Score=40.69 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 754 WRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 754 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
.+.|-.++...++++.|.+..+.++.+.|+++.-..-.|-+|++.|.+..|..-++.--+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 556667888999999999999999999999999999999999999999999887765543
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.90 E-value=0.73 Score=29.20 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=12.6
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 002718 679 VKP-NHATFISVLRACAHIGLVEKGL 703 (888)
Q Consensus 679 ~~p-~~~t~~~ll~a~~~~g~~~~a~ 703 (888)
+.| |...|..+...+...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344 3345555555555555555543
No 304
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.41 E-value=37 Score=33.83 Aligned_cols=55 Identities=16% Similarity=-0.018 Sum_probs=50.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
..|...|++..|..+.++++.++|-+...+..|.++|+..|+--+|.+-++.+.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4688899999999999999999999999999999999999999999888887753
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.80 E-value=9.4 Score=34.64 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHhcCCC-Cc---ccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002718 527 CKCGMVEEAKKILKRTEER-DV---VSWNAIISGFSGAKRSEDAHKFFSYMLK 575 (888)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 575 (888)
...|.+++.....+.+..+ ++ ..-.+|.-+-.+.|++..|.+.|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555555444444321 11 1233444445556666666666666554
No 306
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.77 E-value=2.1 Score=30.38 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=27.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 002718 757 LLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILL 791 (888)
Q Consensus 757 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 791 (888)
+.-++.+.|+++.|.+..+.+++.+|+|..+..+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 44477899999999999999999999877665443
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.73 E-value=11 Score=35.05 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 002718 760 ICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNI 794 (888)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 794 (888)
+|-+...++.|+.-++++++.+|....+-.....+
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 45555678888888999999988765554444443
No 308
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.00 E-value=16 Score=29.79 Aligned_cols=88 Identities=7% Similarity=-0.027 Sum_probs=60.8
Q ss_pred CchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002718 193 DGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQK 272 (888)
Q Consensus 193 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (888)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+.+...+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 455566666666554432 333333334567889999999999999999999999877654 67777888888888887
Q ss_pred cCCCCChhhHHH
Q 002718 273 IGVGISQSTYAS 284 (888)
Q Consensus 273 ~g~~p~~~t~~~ 284 (888)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 344444443
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.53 E-value=4.5 Score=40.51 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|...|+...|...++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566667777777777777777777777777777788888887777777776654
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.47 E-value=16 Score=37.53 Aligned_cols=135 Identities=12% Similarity=0.185 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC--c----ccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHH
Q 002718 564 EDAHKFFSYMLKMGVKPDDFTYATLLDTCGN--L----ATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSR 637 (888)
Q Consensus 564 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 637 (888)
++.+.+++.|.+.|++-+..+|.+..-.... . .....+..+++.|.+..+-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4456778888888888887776553332222 1 224466666777766532111
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHh
Q 002718 638 IMFEKSPKRDFVTWNAMICGYAHHGL----GEEALKVFENMELENVKP-NHATFISVLRACAHIGL---VEKGLHYFNVM 709 (888)
Q Consensus 638 ~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~---~~~a~~~~~~m 709 (888)
.++-.++..|+.. ..++ .+.+...|+.+.+.|+.. |..-+.+-+-++..... +.++.++++.+
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1122223333222 1111 366778888888888888 44444444444433222 45778888888
Q ss_pred HhccCCCCChhHHHHHHHHH
Q 002718 710 LSDYSLHPQLEHYSCMVDIL 729 (888)
Q Consensus 710 ~~~~~~~p~~~~~~~l~~~l 729 (888)
.+. ++++...+|..++-+-
T Consensus 209 ~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHc-CCccccccccHHHHHH
Confidence 754 9999888887665433
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.65 E-value=2.7 Score=26.23 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666665
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.09 E-value=6.7 Score=36.03 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCC
Q 002718 767 VEVAEEAASSLLQLDPQDSSTYILLSNIYADAGM 800 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 800 (888)
++.|+.-+++++.++|+...++..+|++|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4466677777777788777788888887776654
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.02 E-value=6.4 Score=36.99 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=52.5
Q ss_pred hhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHcCCchH
Q 002718 730 GRSGQLNKALKLIQEMPFEA--DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ----DSSTYILLSNIYADAGMWDK 803 (888)
Q Consensus 730 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 803 (888)
.|.|+ ++|.+.|-++.-.| +.......+..+....|.++++.++-+++++.+. |+..+..|+.+|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44455 45555555553222 3444445555555678999999999999998533 68889999999999999998
Q ss_pred H
Q 002718 804 L 804 (888)
Q Consensus 804 a 804 (888)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 7
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.91 E-value=1.8 Score=25.30 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHcCCchHHHHHHH
Q 002718 786 STYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 786 ~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999988764
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.58 E-value=2.9 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=12.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
.++.+.|+.+.|...++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3444455555555555555555553
No 316
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.56 E-value=8.2 Score=31.16 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=38.2
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 002718 744 EMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILL 791 (888)
Q Consensus 744 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 791 (888)
.+.+-|++.+..+.+.+|++-+|+..|.++++-+...-..+...|-.+
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 346789999999999999999999999999998876654344444443
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.28 E-value=16 Score=34.20 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhccCC--CCCh----h
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA--TFISVLRACAHIGLVEKGLHYFNVMLSDYSL--HPQL----E 720 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~----~ 720 (888)
..+..+..-|++.|+.+.|++.|.++.+....|... .+..++..+...|++..+..+..+...-... .++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356777788888888888888888888876666543 5677788888888888888887776532111 1111 1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 721 HYSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 721 ~~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
.|..+. +...|++.+|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 222222 23456777777766655
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.02 E-value=12 Score=37.37 Aligned_cols=103 Identities=9% Similarity=0.207 Sum_probs=68.8
Q ss_pred hcCCCchhhhHHHHHhhhccCChHHHHHHHhhcCCC-Ce---eeHH-HHHHHHHhCCChhHHHHHHHHHHHcCCCCCcch
Q 002718 409 SNLWSNICVANSILDMYGKCQDVIEACHVFDEMERR-DA---VSWN-AIIAVQAQNGNEEETLFYFISMLHAIMEPDEFT 483 (888)
Q Consensus 409 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 483 (888)
.|...+..+...+++.-....+++++...+-++... +. ..|+ ..+.-++-.-++++++.++..=++.|+-||.++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchhh
Confidence 344555556667777777777788887777666542 10 0111 111222334467788888888888888888888
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhC
Q 002718 484 YGSVLKACAGQQALNYGMQIHSRIIKSG 511 (888)
Q Consensus 484 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g 511 (888)
++.++..+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888777766554
No 319
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.91 E-value=14 Score=32.00 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=32.1
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 716 HPQLEHYSCMVDILGRSGQLN---KALKLIQEM-P-FEAD--DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 716 ~p~~~~~~~l~~~l~~~g~~~---~A~~~~~~~-~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
.++..+--.+..++.+..+.+ +.+.++++. + -.|+ -...-.|.-+|.+.|+++.+++..+.+++.+|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 455555555666666555433 333444433 1 1221 111222223455555666666666666666553
No 320
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.90 E-value=1.9e+02 Score=38.26 Aligned_cols=61 Identities=10% Similarity=0.048 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 751 DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 751 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
..+|-.....+++.|.++.|..+.-++.+.. -+..+.-.+......|+-..|..+.+..-+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4579999999999999999999998888877 578899999999999999999988876653
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.89 E-value=9.9 Score=31.06 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=35.5
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 002718 744 EMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLS 792 (888)
Q Consensus 744 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 792 (888)
.+.+-|++.+..+.|.+|++-+|+..|.++++-+-.+-.+....|-.+.
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 4457899999999999999999999999999999887654444554443
No 322
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.77 E-value=2.6 Score=44.74 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=85.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchH
Q 002718 726 VDILGRSGQLNKALKLIQEM-PFEADDVIWRTLL-SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDK 803 (888)
Q Consensus 726 ~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 803 (888)
.+-+...+.++.|..++.++ .++||..+|-+.= .++.+.+++..|..-+.++++++|.....|+.-+.++.+.+++-+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44556677888888888776 6788766544443 577888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCCC
Q 002718 804 LSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEMKWRGCAS 865 (888)
Q Consensus 804 a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~ 865 (888)
|...++..+. .-|.-.....++.+......+.+|.+
T Consensus 91 A~~~l~~~~~--------------------------l~Pnd~~~~r~~~Ec~~~vs~~~fe~ 126 (476)
T KOG0376|consen 91 ALLDLEKVKK--------------------------LAPNDPDATRKIDECNKIVSEEKFEK 126 (476)
T ss_pred HHHHHHHhhh--------------------------cCcCcHHHHHHHHHHHHHHHHHhhhh
Confidence 9888875543 12333445566666666666655554
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=9.3 Score=41.76 Aligned_cols=101 Identities=19% Similarity=0.109 Sum_probs=70.0
Q ss_pred hhccCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 002718 425 YGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIH 504 (888)
Q Consensus 425 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 504 (888)
..+.|+++.|.++..+. .+..-|..|.++..+.|+...|.+.|..... |..++-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34567777777766543 3566788888888899999999988887655 456666777777776666665
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 002718 505 SRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRT 542 (888)
Q Consensus 505 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 542 (888)
....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 55566652 233444567778888888877543
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.71 E-value=41 Score=29.97 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 002718 696 IGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKLIQEMPFE-ADDVIWRTLLSICK 762 (888)
Q Consensus 696 ~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~ 762 (888)
.++.+++..++..|. -+.|+.. .-..-+..+.+.|+++||..++++..-. +....-..|+..|.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 455555555555554 2333322 1122233445556666666666655322 23333344444443
No 325
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.58 E-value=71 Score=32.60 Aligned_cols=19 Identities=21% Similarity=-0.130 Sum_probs=13.4
Q ss_pred HHHHhCCHHHHHHHHHHHH
Q 002718 760 ICKIHGNVEVAEEAASSLL 778 (888)
Q Consensus 760 ~~~~~g~~~~a~~~~~~~~ 778 (888)
.+.+.+|++.|..-++-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4557778888888777544
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.26 E-value=44 Score=30.74 Aligned_cols=129 Identities=11% Similarity=0.105 Sum_probs=70.0
Q ss_pred HHHHHHHhCCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCCCCcchhhHHHHHHHhc--CchhHHHHhhhhCCCCCcee
Q 002718 68 AHARLIVSGFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVR--GEMGIARTLFEAMPERDVIS 145 (888)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~~ 145 (888)
....+...++.|++..|..+|+.+.+.|.+.....++.--.-+|...-...+-.+... .-..-|..++.++. ..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~ 91 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TA 91 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hh
Confidence 3445556788888888888888888888887777766543322222222222111111 11223444444433 24
Q ss_pred hHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhHHHHHH
Q 002718 146 WNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQLHCFA 204 (888)
Q Consensus 146 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 204 (888)
+..++..+...|++-+|+.+.+..... .+.....++.+....+|...-..++...
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566777888888888888888765321 1122233444444444444433444333
No 327
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.04 E-value=46 Score=32.63 Aligned_cols=202 Identities=12% Similarity=0.104 Sum_probs=120.1
Q ss_pred CCCCCcchhhhhccch-hhcCCHHHHHHHHHhCC----C---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCC
Q 002718 612 EMQSDVYISSTLVDMY-SKCGNVQDSRIMFEKSP----K---RDFVTWNAMICGYAHHGLGEEALKVFENMELE---NVK 680 (888)
Q Consensus 612 ~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~~~----~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 680 (888)
+-+||+..-|..-..- .+...+++|..-|++.. . ........||..+.+.|++++-++.|.+|..- .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4456665544432221 24457788887777654 1 23345667888999999999999888887641 122
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh----ccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--C-----
Q 002718 681 P--NHATFISVLRACAHIGLVEKGLHYFNVMLS----DYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP--F----- 747 (888)
Q Consensus 681 p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~----- 747 (888)
- +..+.++++.--+...+.+--..+++.-.+ ..+-.....+-.-|..+|...|.+.+-.++++++. .
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 2 334566776665555555544444443221 11222334445677888888888888777777651 1
Q ss_pred CCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcchHH----HHHHHHHHcCCchHH-HHHHHHHHh
Q 002718 748 EAD-------DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ--DSSTYI----LLSNIYADAGMWDKL-SYTRRLMRQ 813 (888)
Q Consensus 748 ~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~----~l~~~~~~~g~~~~a-~~~~~~m~~ 813 (888)
+.| ..+|..=+..|..++|-..-..++++++..... +|...- .=+.++.+.|+|++| -.+|+..+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 111 123444455677778888888999998887543 222221 123456778899998 556666553
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.76 E-value=1.9 Score=26.67 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 002718 787 TYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 787 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 814 (888)
++..++.+|...|++++|.+.++.+.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678999999999999999999988653
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.45 E-value=3.7 Score=24.62 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
+|..+...+...|+++.|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555556666666666666666555
No 330
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=79.12 E-value=79 Score=32.52 Aligned_cols=139 Identities=13% Similarity=0.192 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhHhccCCCCChh--HHHHHHHHHhhcCCH
Q 002718 664 GEEALKVFENMELENVKPNHATFISVLRACAH--IG----LVEKGLHYFNVMLSDYSLHPQLE--HYSCMVDILGRSGQL 735 (888)
Q Consensus 664 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~l~~~g~~ 735 (888)
+++.+.+++.|.+.|++-+..+|.+....... .. ....|..+|+.|+++|..--..+ .+..|+ -.+.+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL--A~~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL--AMTSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH--hcccccH
Confidence 45667889999999999888777764443332 22 35678999999998876644443 333332 2244444
Q ss_pred H----HHHHHHHhC---CCCC-CHH-HHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHcCCchH
Q 002718 736 N----KALKLIQEM---PFEA-DDV-IWRTLLSICKIHGN--VEVAEEAASSLLQLDPQ-DSSTYILLSNIYADAGMWDK 803 (888)
Q Consensus 736 ~----~A~~~~~~~---~~~p-~~~-~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~ 803 (888)
+ +++..++.+ ++.. |.. .....+..+....+ +..+..+++.+-+.+-. ....|-.+|-+-.-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 333444433 4444 333 33334433322221 34566666666655432 33335555554444444424
Q ss_pred H
Q 002718 804 L 804 (888)
Q Consensus 804 a 804 (888)
.
T Consensus 236 ~ 236 (297)
T PF13170_consen 236 I 236 (297)
T ss_pred H
Confidence 4
No 331
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=79.08 E-value=13 Score=34.90 Aligned_cols=89 Identities=11% Similarity=0.015 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcc----hHH
Q 002718 721 HYSCMVDILGRSGQLNKALKLIQEMP---FEAD--DVIWRTLLSICKIHGNVEVAEEAASSLLQLD--PQDSS----TYI 789 (888)
Q Consensus 721 ~~~~l~~~l~~~g~~~~A~~~~~~~~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~~~ 789 (888)
.+..+++.|.+.|+.++|.+.+.++. ..+. ..++-.++..+...+|+........++...- +.|.. .-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34555566666666666666666552 1121 2345555556666666666666666554441 11211 123
Q ss_pred HHHHHHHHcCCchHHHHHHH
Q 002718 790 LLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 790 ~l~~~~~~~g~~~~a~~~~~ 809 (888)
.-|-.+...|++.+|.+.+-
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHhchHHHHHHHHH
Confidence 33444556677777777664
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=20 Score=35.92 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=71.6
Q ss_pred hCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCC-------CChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 002718 207 MGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSE-------RNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQ 279 (888)
Q Consensus 207 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 279 (888)
.|......+-..++..-....+++++...+=.+.. ++... .+.++- +-.-++++++.++..=++-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 34455555666667666667788888887765543 22211 122222 2334677999999988999999999
Q ss_pred hhHHHHHHHhhcCCChhHHHHHHHHHHHhC
Q 002718 280 STYASILRSCAALSNLKLGTQLHAHALKTD 309 (888)
Q Consensus 280 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 309 (888)
++++.+|..+.+.+++..|.++.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999998888887777654
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.50 E-value=64 Score=34.19 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 749 ADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ----DSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 749 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
....+|..+...++++|+++.|...+.++...++. .+...+.-+.+....|+.++|....+....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567999999999999999999999999987632 567788889999999999999887766655
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.19 E-value=1.4e+02 Score=34.50 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHhhCCChhhHHHHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCCh
Q 002718 150 LSGYLLVGDFSKAIDVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKL 229 (888)
Q Consensus 150 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 229 (888)
|..+.+.+.+++|+...+..... .|.. .-..++...|+.|.-.|++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~---~~~~-------------------------------~i~kv~~~yI~HLl~~~~y 408 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN---EERF-------------------------------VIKKVGKTYIDHLLFEGKY 408 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC---cccc-------------------------------chHHHHHHHHHHHHhcchH
Confidence 66677788888888877655422 1110 0122344555666666667
Q ss_pred hhHHHHhcccCCCChhHHHHHHHHHHhcCChh
Q 002718 230 DDSVSLFNRMSERNWVSWNTVIAGCVQNYKFI 261 (888)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 261 (888)
++|-...-.|...+..-|.--+.-+...++..
T Consensus 409 ~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 409 DEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 77666666666666666665555555555544
No 335
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.12 E-value=1.2 Score=44.92 Aligned_cols=90 Identities=11% Similarity=0.199 Sum_probs=60.1
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 732 SGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 732 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
.|.+++|++.+... +..| ....+..-.+++.+.+....|++-+..+++++|+....|-.-+.+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455665555544 3333 333444555566667777778888888888888888888888888888888888877777
Q ss_pred HHHhCCCccCCC
Q 002718 810 LMRQNKVRKEPG 821 (888)
Q Consensus 810 ~m~~~~~~~~~~ 821 (888)
..-..+.....+
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 666666554443
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.10 E-value=10 Score=34.90 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 767 VEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
+++|...|+++.+.+|.|..+...|--. ++|-++..++...+.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 4578888888888999766655544332 356666666665554
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.74 E-value=3.7 Score=25.67 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666677777777777777777665
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.39 E-value=1.2e+02 Score=34.68 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=84.8
Q ss_pred HHhCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhHhccCCCCChhHHHHH
Q 002718 658 YAHHGLGEEALKVFENMEL-------ENVKPNHATFISVLRACAHIG-----LVEKGLHYFNVMLSDYSLHPQLEHYSCM 725 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~l 725 (888)
+....|.+.|+.+|+.+.. .| +......+..+|.+.. +.+.|..++.+... .| .|+...+...
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHH
Confidence 4445567777777776655 44 2334555666666643 45667777777653 23 3444433332
Q ss_pred HHHHhh-cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHc-C
Q 002718 726 VDILGR-SGQLNKALKLIQEMPFE--ADDVIWRTLLSICK--IHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADA-G 799 (888)
Q Consensus 726 ~~~l~~-~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 799 (888)
....+. ..+...|.+++...... +++..+-++...+- ...+.+.|...++++-+++ ++.+...++..+.-. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 222233 23466788887776322 23333333222211 2347888888888888887 455555666555544 7
Q ss_pred CchHHHHHHHHHHhCCC
Q 002718 800 MWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 800 ~~~~a~~~~~~m~~~~~ 816 (888)
+++.+.-.+..+++.|.
T Consensus 412 ~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGY 428 (552)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 77777666666655544
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.81 E-value=18 Score=25.77 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcC
Q 002718 787 TYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRDKDHPKCEEIYEKLGLLIGEMKWRG 862 (888)
Q Consensus 787 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g 862 (888)
.+..++-.+++.|++++|.+.-+.+-+. .|...+.....+.+..+|.++|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence 3577899999999999999988877552 3444555566666667777776
No 340
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.81 E-value=7.7 Score=25.50 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.08 E-value=11 Score=35.61 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=36.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 725 MVDILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 725 l~~~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
-+..+.+.+.+++|+.+.+.- .-+| |...-..|...++..|++++|..-++-+-++.|++.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344556666666666665543 3344 444555566666666777777666666666666543
No 342
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.51 E-value=18 Score=36.68 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 002718 720 EHYSCMVDILGRSGQLNKALKLIQEM-P---FEA--DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSN 793 (888)
Q Consensus 720 ~~~~~l~~~l~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 793 (888)
.+|.-=++-|.+..++..|...+.+- . -.| +.+.|+.-..+-.-.||+..++.-..+++..+|.+..+|+.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34555567788899999999998765 1 233 45667777777777899999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHH
Q 002718 794 IYADAGMWDKLSYTRR 809 (888)
Q Consensus 794 ~~~~~g~~~~a~~~~~ 809 (888)
++....++++|...-+
T Consensus 162 c~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999666654433
No 343
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=23 Score=34.25 Aligned_cols=55 Identities=11% Similarity=-0.012 Sum_probs=45.5
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
..+.+.|++-.+++....++..+|.|..+|+.-+.+.+..=+-++|..-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999998888787888776665544
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.99 E-value=66 Score=30.73 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=76.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhc-cCCCCChhHHHHHHHH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSD-YSLHPQLEHYSCMVDI 728 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~l~~~ 728 (888)
.+.-++.+.+.+...+|+...++-.+ -+| |.-+-..+...++-.|++++|..-++..-.- -...+....|..+++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456778888889999998887777 477 5566777888899999999998877765411 1222334456655543
Q ss_pred HhhcCCHHHHH-HHHHhC--C-CCC-CHHHHHHHHH-H--HHHhCCHHHHHHHHHHHHhcCCCC
Q 002718 729 LGRSGQLNKAL-KLIQEM--P-FEA-DDVIWRTLLS-I--CKIHGNVEVAEEAASSLLQLDPQD 784 (888)
Q Consensus 729 l~~~g~~~~A~-~~~~~~--~-~~p-~~~~~~~ll~-~--~~~~g~~~~a~~~~~~~~~~~p~~ 784 (888)
+.+. ++|..- | +.- .+..|...+. + |..-|.-+.....-+.+++..|..
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 2222 223221 2 111 3445655544 3 333345666777778888887753
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.88 E-value=28 Score=28.59 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHH
Q 002718 666 EALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVD 727 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 727 (888)
+..+-++.+....+-|++....+.+.||.+.+++.-|+.+|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455556666777788999999999999999999999999999988765533 336666653
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.03 E-value=31 Score=28.02 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHH
Q 002718 664 GEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMV 726 (888)
Q Consensus 664 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 726 (888)
.=++.+-++.+....+-|++....+.+.||.+.+++.-|+.+|+..+.+.+. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3355566667777778899999999999999999999999999988755443 344555554
No 347
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=71.81 E-value=2.5e+02 Score=34.47 Aligned_cols=82 Identities=10% Similarity=-0.008 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 002718 680 KPNHATFISVLRACAHIGLVEK-GLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLL 758 (888)
Q Consensus 680 ~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 758 (888)
.++...-.....++.+.+..+. +...+..+.. .++...-...+..|++.|..+.+...+..+--.+|..+-...+
T Consensus 753 D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa 828 (897)
T PRK13800 753 DENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAA 828 (897)
T ss_pred CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHH
Confidence 3444444444444444443321 2233333332 1344444555555555555443322233222234444444444
Q ss_pred HHHHHhC
Q 002718 759 SICKIHG 765 (888)
Q Consensus 759 ~~~~~~g 765 (888)
.++...+
T Consensus 829 ~aL~~l~ 835 (897)
T PRK13800 829 RALAGAA 835 (897)
T ss_pred HHHHhcc
Confidence 4444444
No 348
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.71 E-value=9.1 Score=25.11 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHH
Q 002718 788 YILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 788 ~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
+..|+.+|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 444555555555555554444433
No 349
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=14 Score=35.64 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=64.6
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHhCCHH
Q 002718 692 ACAHIGLVEKGLHYFNVMLSDYSLHPQLEHY-SCMVDILGRSGQLNKALKLIQEM-PFEADDVIWRTLLSIC-KIHGNVE 768 (888)
Q Consensus 692 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~ 768 (888)
-|.....++.|+..|.+.+ -+.|+...| ..=+..+.+..+++.+..--.+. .+.||.+--...++.+ .....++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4667777888888777776 556776543 44445555666777666544443 5677776655555543 3445677
Q ss_pred HHHHHHHHHHhcC---CCCcchHHHHHHHHHHcCCchHH
Q 002718 769 VAEEAASSLLQLD---PQDSSTYILLSNIYADAGMWDKL 804 (888)
Q Consensus 769 ~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a 804 (888)
.|+..+.++..+. |-+.+-=+-..-.-++..+|+..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~ 134 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVS 134 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchh
Confidence 8888877775552 22222222233334555666644
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.70 E-value=9.9 Score=30.78 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 772 EAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 772 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
..+++.++.+|+|......++..+...|++++|.+.+-
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll 46 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLL 46 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455555566666666666666666666666644433
No 351
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=32 Score=37.93 Aligned_cols=130 Identities=15% Similarity=0.122 Sum_probs=72.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHhcCCCCCcchhhHHHHHHHhcCchhHHHHhhhhCCCCCceehHHHHHHHhhCCChhhHH
Q 002718 84 SNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLLVGDFSKAI 163 (888)
Q Consensus 84 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 163 (888)
-+.++..+-+.|-.++|+.+--.-.. -.....+.|+++.|.++..+. .+..-|..|..+....|++..|.
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~d~--------rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~ 686 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDPDQ--------RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLAS 686 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCChhh--------hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHH
Confidence 45555556666666555543321111 112234556666666665543 45567888888888888888888
Q ss_pred HHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcc
Q 002718 164 DVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNR 238 (888)
Q Consensus 164 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (888)
+.|.+.+. +..|+-.+...|+.+....+-....+.|.. |.-.-+|...|+++++.+++.+
T Consensus 687 EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 687 ECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 88877653 345555555555555444444444444421 2222334455666666665543
No 352
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.01 E-value=1.3e+02 Score=30.60 Aligned_cols=159 Identities=14% Similarity=0.074 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhccC-CCCChhHHH
Q 002718 649 VTWNAMICGYAHHGL---GEEALKVFENMELENVKPN-HATFISVLRACAHIGLVEKGLHYFNVMLSDYS-LHPQLEHYS 723 (888)
Q Consensus 649 ~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~ 723 (888)
.+...++.+|...+. .++|..+++.+... .|+ ...+..-+..+.+.++.+++.+.+.+|+.... ...+.+...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 356677788877766 44566667777553 454 35565666777778888899999999886533 223333322
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HHH---HHHHhCC------HHHHHHHHHHHHhc--CCCCcch
Q 002718 724 CMVDILGRSGQLNKALKLIQEM---PFEADDV-IWRT-LLS---ICKIHGN------VEVAEEAASSLLQL--DPQDSST 787 (888)
Q Consensus 724 ~l~~~l~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-ll~---~~~~~g~------~~~a~~~~~~~~~~--~p~~~~~ 787 (888)
..+..+..... ..|...+..+ .+.|... .... ++. .+...++ ++....+++.+.+. .|-++.+
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 23333333332 3343333333 2333332 1111 111 1222222 33333333322222 2222222
Q ss_pred -------HHHHHHHHHHcCCchHHHHHHHH
Q 002718 788 -------YILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 788 -------~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
...-+...++.++|++|.+.++.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 23335668889999999988873
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.74 E-value=9.5 Score=29.54 Aligned_cols=47 Identities=11% Similarity=0.119 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHHHHHHH
Q 002718 695 HIGLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLNKALKL 741 (888)
Q Consensus 695 ~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~~A~~~ 741 (888)
+....++|+..|++..++..-.|+.. ++.+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777766665433333222 456666667777776666654
No 354
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.38 E-value=94 Score=30.47 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=62.6
Q ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHH
Q 002718 651 WNAMICGYA--HHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDI 728 (888)
Q Consensus 651 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 728 (888)
|...+.|+. .++++++|++.+-.- .+.|+.. .-++.++...|+.+.|+.+++.+. +.-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 444555543 457778887777221 1222222 136667777888888888887764 222223333333334
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Q 002718 729 LGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHG 765 (888)
Q Consensus 729 l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 765 (888)
...|.+.||..+.+...-+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 456888899888887653333457777777776544
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.86 E-value=8.5 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=11.1
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 002718 724 CMVDILGRSGQLNKALKLIQ 743 (888)
Q Consensus 724 ~l~~~l~~~g~~~~A~~~~~ 743 (888)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44555555666666655543
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.79 E-value=76 Score=37.64 Aligned_cols=130 Identities=9% Similarity=0.057 Sum_probs=69.8
Q ss_pred ehHHHHHHHhhCCChhhHHHHHHHHHhcCCCCCCchHHHHHHHhcccCCchhHhHHHHHHHHhCCC--CChhhHHHHHHh
Q 002718 145 SWNSLLSGYLLVGDFSKAIDVFVEMGRLSGMVDNRSFAVALKACSILEDGDFGVQLHCFAMKMGFD--KDVVTGSALVDM 222 (888)
Q Consensus 145 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~li~~ 222 (888)
-|..|+-.|...|++++|++++.+...... ..+...... -..+.+.+.+.+-+ +-+..|...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-~~d~~~~~~------------~e~ii~YL~~l~~~~~~Li~~y~~w--- 569 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDS-DTDSFQLDG------------LEKIIEYLKKLGAENLDLILEYADW--- 569 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccc-ccccchhhh------------HHHHHHHHHHhcccchhHHHHHhhh---
Confidence 478888888888899999988888765310 011111110 01122333333322 111222211
Q ss_pred hhcCCChhhHHHHhcccCCCChhHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhc
Q 002718 223 YAKCKKLDDSVSLFNRMSERNWVSWN-TVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAA 291 (888)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 291 (888)
.-..+.+...++|-.-......+.+ .-+-.|......+-++.+++.+....-.++..-.+.++..++.
T Consensus 570 -vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 570 -VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred -hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1234556666666551110001111 1234566777888899999999887777777777777766643
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.69 E-value=1.8e+02 Score=31.72 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=93.3
Q ss_pred hhhhhccchhhcCCHHHHHHHHHhCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 002718 619 ISSTLVDMYSKCGNVQDSRIMFEKSP--KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHI 696 (888)
Q Consensus 619 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 696 (888)
..-++++.++......-...+..+|. ..+-..|-.++.+|... ..++-..+|+++.+ +.-|.+.+..-+-.+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHH
Confidence 33445555555555555555555544 34556677778888877 44677788888877 555555555544444455
Q ss_pred CCHHHHHHHHHHhHhccCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCC
Q 002718 697 GLVEKGLHYFNVMLSDYSLHPQ------LEHYSCMVDILGRSGQLNKALKLIQEM----PFEADDVIWRTLLSICKIHGN 766 (888)
Q Consensus 697 g~~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~l~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~ 766 (888)
++-+.+..+|.++.. .+.|. .+.|.-++...+ .+.|..+.+..+. +..--.+.+.-+-.-|....|
T Consensus 145 ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 778888888877753 33332 223444443322 3344444444443 222233344444455556667
Q ss_pred HHHHHHHHHHHHhcCCCCcchH
Q 002718 767 VEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
+.+|.++...+++.+..|..+.
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHH
Confidence 8888888887777766554443
No 358
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.69 E-value=60 Score=26.60 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 002718 497 LNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKM 576 (888)
Q Consensus 497 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 576 (888)
.++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 34555555554444311 22222333455778899999999999998899998887754 3566667677777777776
Q ss_pred CCCCCHHHHH
Q 002718 577 GVKPDDFTYA 586 (888)
Q Consensus 577 g~~p~~~t~~ 586 (888)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 55555553
No 359
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.36 E-value=4.2e+02 Score=35.34 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=80.9
Q ss_pred hhHHHHHhhhccCChHHHHHHHhh-cCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHHhcc
Q 002718 417 VANSILDMYGKCQDVIEACHVFDE-MERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQ 494 (888)
Q Consensus 417 ~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 494 (888)
.+..+...|+..+++|....+... ...+ +...-|......|++..|...|+.+.+. .|+ ..+++.++......
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~ 1496 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAI 1496 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcc
Confidence 455556688888888887777663 3222 2334455566789999999999999885 455 67788888877777
Q ss_pred CChhHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH
Q 002718 495 QALNYGMQIHSRIIKSGMGSNLFVG-SALIDMYCKCGMVEEAKKILKRTEERDVVSWNAI 553 (888)
Q Consensus 495 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 553 (888)
+.++......+-..... .+....+ +.=+.+--+.++++....... ..+..+|.+.
T Consensus 1497 ~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1497 QHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred cchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 77777666444433322 2333333 333444466777777666655 4556666655
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.34 E-value=44 Score=35.66 Aligned_cols=119 Identities=15% Similarity=0.152 Sum_probs=68.1
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHH
Q 002718 661 HGLGEEAL-KVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKAL 739 (888)
Q Consensus 661 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~ 739 (888)
.|+...|- +++.-+....-.|+.+...+. ...+.|.++.+.+.+..... -+-....+..|++..+.+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45544443 344444443334554443333 35677777777777766542 22334456677777777777777777
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 740 KLIQEM-PF-EADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 740 ~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
...+.| +. -.++.+.......-...|-++++...+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777766 21 123334333333444556677777777777777653
No 361
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.05 E-value=1.8e+02 Score=31.06 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=51.4
Q ss_pred HHHHHhhhccCChHHHHHHHhhcCCC---CeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002718 419 NSILDMYGKCQDVIEACHVFDEMERR---DAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAG 493 (888)
Q Consensus 419 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 493 (888)
..|+.-|...|++.+|.+.+.++.-| ..+.+.+++.+.-+.|+-+..+.+++.....|+ .|.+.+-+++.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 56778888889999999988887765 456777888888888887777777777766553 455555555543
No 362
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.34 E-value=2e+02 Score=31.32 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=11.4
Q ss_pred HHHhhcCCChhHHHHHhcc
Q 002718 321 LDMYAKCNNMSDAQKVFNS 339 (888)
Q Consensus 321 i~~~~~~g~~~~A~~~~~~ 339 (888)
+...++.|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 4445566776666666654
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.22 E-value=1.4e+02 Score=31.52 Aligned_cols=153 Identities=13% Similarity=0.089 Sum_probs=84.8
Q ss_pred hhhhccchhhcCCHHHHHHHHHhCCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCCCCHH
Q 002718 620 SSTLVDMYSKCGNVQDSRIMFEKSPK------RDFVTWNAMICGYAHHGLGEEALKVFENMELE---------NVKPNHA 684 (888)
Q Consensus 620 ~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~~ 684 (888)
..-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|......-.+..+. -+.+-..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 45567889999999999999988552 22345666666666667776666665555442 1233444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCC-----CChhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHH
Q 002718 685 TFISVLRACAHIGLVEKGLHYFNVMLSDYSLH-----PQLEHYSCMVDILGRSGQLNKALKLIQEMP----FEADDVIWR 755 (888)
Q Consensus 685 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-----p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~----~~p~~~~~~ 755 (888)
.+.++...+. +++..|.+.|-......... |.-........+++.-++-+--+.++..-. ++-++.+|.
T Consensus 233 C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~ 310 (466)
T KOG0686|consen 233 CAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLRE 310 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHHH
Confidence 5555555444 47888888776665443332 322222233344444444443334444332 234566676
Q ss_pred HHHHHHHHhCCHHHHHHHHHH
Q 002718 756 TLLSICKIHGNVEVAEEAASS 776 (888)
Q Consensus 756 ~ll~~~~~~g~~~~a~~~~~~ 776 (888)
.+...|. +++.....++++
T Consensus 311 il~~fy~--sky~~cl~~L~~ 329 (466)
T KOG0686|consen 311 ILFKFYS--SKYASCLELLRE 329 (466)
T ss_pred HHHHHhh--hhHHHHHHHHHH
Confidence 6666553 344444444433
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.85 E-value=49 Score=31.05 Aligned_cols=85 Identities=11% Similarity=0.024 Sum_probs=53.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHH
Q 002718 655 ICGYAHHGLGEEALKVFENMELENVKPNHA-----TFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDIL 729 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 729 (888)
...+...|++++|+..++.... .|... +=..|.+.....|.+|+|+..++....+ +..+ .....-.|+|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~--~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAA--IVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHH--HHHHHhhhHH
Confidence 4556677888888888777665 23222 2234455677788888888888766522 2111 1123346788
Q ss_pred hhcCCHHHHHHHHHhC
Q 002718 730 GRSGQLNKALKLIQEM 745 (888)
Q Consensus 730 ~~~g~~~~A~~~~~~~ 745 (888)
...|+-++|..-+++.
T Consensus 170 l~kg~k~~Ar~ay~kA 185 (207)
T COG2976 170 LAKGDKQEARAAYEKA 185 (207)
T ss_pred HHcCchHHHHHHHHHH
Confidence 8888888888877765
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=65.06 E-value=52 Score=31.14 Aligned_cols=73 Identities=15% Similarity=0.045 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccC--CCCChhHHHHHHHHHhhcCCHHHH
Q 002718 665 EEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYS--LHPQLEHYSCMVDILGRSGQLNKA 738 (888)
Q Consensus 665 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~l~~~l~~~g~~~~A 738 (888)
+.|.+.|-++...+.--+......|..-|. ..+.++++.++.+..+-+. -.++++.+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555554433323333333333333 4455555555555543221 123444455555555555554444
No 366
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.92 E-value=71 Score=28.51 Aligned_cols=76 Identities=13% Similarity=0.301 Sum_probs=46.2
Q ss_pred HHHHHhhhcCCChhhHHHHhcccCC---------CChhHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCChhhHHHHH
Q 002718 217 SALVDMYAKCKKLDDSVSLFNRMSE---------RNWVSWNTVIAGCVQNYK-FIEALKLFKIMQKIGVGISQSTYASIL 286 (888)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (888)
|.++.-....+++.....+++.+.. .+..+|++++.+..+... ---+..+|..|++.+.++++..|..+|
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555555555544421 344567777777755554 334567777777777777888888887
Q ss_pred HHhhcC
Q 002718 287 RSCAAL 292 (888)
Q Consensus 287 ~~~~~~ 292 (888)
.+|.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 777554
No 367
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.86 E-value=3.1e+02 Score=32.89 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=20.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002718 549 SWNAIISGFSGAKRSEDAHKFFSYMLK 575 (888)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 575 (888)
-|..|+..|...|..++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366777777778888888888777765
No 368
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.85 E-value=20 Score=39.24 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=71.6
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHhCCHH
Q 002718 693 CAHIGLVEKGLHYFNVMLSDYSLHPQL--EHYSCMVDILGRSGQLNKALKLIQEM-P-FEADDVIWRTLLSICKIHGNVE 768 (888)
Q Consensus 693 ~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~l~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~ 768 (888)
....|+...|.+.+.... ...|.. .....|...+.+.|...+|-.++.+. . ....+.+.-++.+++....|++
T Consensus 617 wr~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 345677888888877766 334432 23455667777777777887777654 2 2334566777788888888999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 002718 769 VAEEAASSLLQLDPQDSSTYILLSNIYA 796 (888)
Q Consensus 769 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 796 (888)
.|++.++.+++++|+++..-..|-.+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999998887766655544
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.27 E-value=1.7e+02 Score=29.57 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 651 WNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 651 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
.+.....|..+|.+.+|.++-++.+. +.| +...+-.++..+...|+--.+.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455667778888888888887777 666 66667777777777777666666665553
No 370
>PRK10941 hypothetical protein; Provisional
Probab=62.31 E-value=82 Score=31.77 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDI 728 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 728 (888)
..+.+-.+|.+.++++.|++..+.+.. +.|+. .-+.--...|.+.|.+..|..=++..++...-.|+.+.....+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 345566677777777777777777777 66743 345555556777777777777666666555555555544444433
Q ss_pred H
Q 002718 729 L 729 (888)
Q Consensus 729 l 729 (888)
+
T Consensus 261 l 261 (269)
T PRK10941 261 I 261 (269)
T ss_pred H
Confidence 3
No 371
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=62.29 E-value=47 Score=32.17 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCH-------HHHHHHHHHHHhcCC--C----CcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 754 WRTLLSICKIHGNV-------EVAEEAASSLLQLDP--Q----DSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 754 ~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
+--+.+.|+..|+. ..|...++++++.+. . ......++|.++.+.|++++|.+.+..+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 33444455555553 345555666665542 1 345678899999999999999998887754
No 372
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.65 E-value=1.2e+02 Score=32.47 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=70.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhHhccCC-CCChhHHHHHHHHHh
Q 002718 656 CGYAHHGLGEEALKVFENMELENVKPNHA--TFISVLRACA--HIGLVEKGLHYFNVMLSDYSL-HPQLEHYSCMVDILG 730 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~l~ 730 (888)
..+..++++..|.++|+++.+. +.++.. .+..+..+|. ..-++++|.+.++........ .-...++..++...-
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~ 217 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLK 217 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHH
Confidence 3455889999999999999987 566554 3444555554 355788999999987643111 011223333333332
Q ss_pred hcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--HhCCHHHHHHHHHHHHhc
Q 002718 731 RSGQLNKALKLIQEMPFEADD-VIWRTLLSICK--IHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 780 (888)
....+.........-.-++.. .+..-+.++-+ ..|+++.|...+-+++|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 218 ALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222222222221112222 33444445555 368999998888888876
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=61.40 E-value=3.1e+02 Score=31.81 Aligned_cols=49 Identities=22% Similarity=0.296 Sum_probs=31.0
Q ss_pred hCCHHHHHHHHHHHHhcC---CCCcchH------HHHHHHHHHcCCchHHHHHHHHHH
Q 002718 764 HGNVEVAEEAASSLLQLD---PQDSSTY------ILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 764 ~g~~~~a~~~~~~~~~~~---p~~~~~~------~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
.|++.+..........+- |+..... -.+.+.|...|+.++|...+....
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677776666665565543 3323322 356667888899999988877654
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=59.80 E-value=84 Score=30.55 Aligned_cols=83 Identities=5% Similarity=-0.108 Sum_probs=56.8
Q ss_pred chhhcCCHHHHHHHHHhCC--CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 002718 626 MYSKCGNVQDSRIMFEKSP--KRDF-VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHA-TFISVLRACAHIGLVEK 701 (888)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 701 (888)
-|....+++.|..-+.+.. .|++ .-|+.-+-++.+..+++.+.+--.+.++ +.||.+ ....+..+......+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3455566777777776655 5555 3456667777778888888777777777 778764 45555566777777888
Q ss_pred HHHHHHHhH
Q 002718 702 GLHYFNVML 710 (888)
Q Consensus 702 a~~~~~~m~ 710 (888)
|+..+.+..
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 888777763
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.76 E-value=86 Score=25.37 Aligned_cols=63 Identities=24% Similarity=0.162 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHcCCch-HHHHHHHHHH
Q 002718 750 DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ--DSSTYILLSNIYADAGMWD-KLSYTRRLMR 812 (888)
Q Consensus 750 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m~ 812 (888)
|....-.+...+...|+++.|...+-.+++.+|+ +..+-..|..++...|.-+ -+.+.|++|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 5567777788888999999999999999998875 5778888888888888854 5577777664
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.50 E-value=80 Score=27.65 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHhccCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 002718 680 KPNHATFISVLRACAHIGL---VEKGLHYFNVMLSDYSLHPQ--LEHYSCMVDILGRSGQLNKALKLIQEM-PFEADD 751 (888)
Q Consensus 680 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~l~~~g~~~~A~~~~~~~-~~~p~~ 751 (888)
.|...+--.+..++.+..+ +.+++.+++...+ .-.|+ .+...-|.-++.|.|+++++..+++.. ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 5666777777788877654 5678888888874 12232 223334556788999999999888876 445543
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.68 E-value=1e+02 Score=25.74 Aligned_cols=82 Identities=7% Similarity=-0.063 Sum_probs=52.4
Q ss_pred ccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 002718 190 ILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKI 269 (888)
Q Consensus 190 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 269 (888)
.....++|..|.+.+...+. ....+--..+..+.+.|++++|...=.....||...|-+|-.. +.|-.+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 34456777777777777664 2333333444567789999999666666667888888766554 78888888888888
Q ss_pred HHHcC
Q 002718 270 MQKIG 274 (888)
Q Consensus 270 m~~~g 274 (888)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 77665
No 378
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=57.42 E-value=40 Score=21.70 Aligned_cols=30 Identities=20% Similarity=0.002 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCHHHHHHH--HHHHHhcCCC
Q 002718 754 WRTLLSICKIHGNVEVAEEA--ASSLLQLDPQ 783 (888)
Q Consensus 754 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 783 (888)
|-.+...+..+|+++.|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555666677777777777 3366655554
No 379
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=57.21 E-value=1e+02 Score=33.11 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=98.3
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Q 002718 695 HIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMP--FEADDVIWRTLLSICKIHGNVEVAEE 772 (888)
Q Consensus 695 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~ 772 (888)
..|+.-.|-+-+......+.-.|+.... ........|+++.+...+.... +.....+...++....+.|..+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4566665554444444455555554433 3344667899999999998773 45566778888888888899999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEeeCC
Q 002718 773 AASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLVRD 838 (888)
Q Consensus 773 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~ 838 (888)
.++-++..+-++++....-+-.....|-+|++.-.|+.+-........| |+..-.....|.-|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCcc
Confidence 9999999888888887777777788899999999999886544433333 554444444454443
No 380
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.81 E-value=21 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 002718 765 GNVEVAEEAASSLLQLDPQDSSTYILLSN 793 (888)
Q Consensus 765 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 793 (888)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888999999888877777766554
No 381
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.10 E-value=2e+02 Score=33.00 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002718 560 AKRSEDAHKFFSYMLKMGVKPDDFTYATLLD 590 (888)
Q Consensus 560 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 590 (888)
.|++.+|.+.+-.+...++.|...-...+.+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 4667777777777777777777665555544
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=55.53 E-value=1.3e+02 Score=30.02 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=58.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHh--
Q 002718 655 ICGYAHHGLGEEALKVFENMELE--NVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILG-- 730 (888)
Q Consensus 655 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~-- 730 (888)
|.+++.-+++.+++...-+--+. .+.|. ....-|-.|++.|....+.++-...... .-.-+...|..++++|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 67888888888887765444331 13333 3334445688999998888888877744 22233344777777665
Q ss_pred ---hcCCHHHHHHHHHhC
Q 002718 731 ---RSGQLNKALKLIQEM 745 (888)
Q Consensus 731 ---~~g~~~~A~~~~~~~ 745 (888)
=.|.++||++++...
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 479999999999654
No 383
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.40 E-value=32 Score=34.41 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=20.6
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHH
Q 002718 763 IHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 763 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 807 (888)
+.|+.++|..+|+.++.+.|+++....-++......++.-+|..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~ 172 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC 172 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence 344444444444444444444444444444444444444444333
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=54.98 E-value=29 Score=23.53 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Q 002718 654 MICGYAHHGLGEEALKVFENMELEN 678 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g 678 (888)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566777777777777777776543
No 385
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.63 E-value=1.7e+02 Score=31.87 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=6.6
Q ss_pred HHHHHHHcCCCCCc
Q 002718 367 LFRLLQKSGLGFNE 380 (888)
Q Consensus 367 ~~~~m~~~g~~p~~ 380 (888)
+.+.+.+.|..|+.
T Consensus 183 iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 183 ICKMLLDSGANIDY 196 (413)
T ss_pred HHHHHHhCCCCCCc
Confidence 33444455555543
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.56 E-value=23 Score=20.69 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
.|..+...+...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555566666666666666665554
No 387
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.64 E-value=2.6e+02 Score=28.39 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCCCCcchhhhhccchhhcCCHHHHHHHHH
Q 002718 578 VKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQ-EMQSDVYISSTLVDMYSKCGNVQDSRIMFE 641 (888)
Q Consensus 578 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 641 (888)
-.++..+...++..++..+++..-.+++...... +...|...|..+++...+.|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3555555666666666666666666665555444 444444445555444444444444444443
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=53.34 E-value=60 Score=28.90 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHH
Q 002718 735 LNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLS 805 (888)
Q Consensus 735 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 805 (888)
-+.|.++++-|+ .....-.........|++..|..+.+.++..+|+|..+..+.+++|.+.|.-.+..
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 355666666664 12222233344567899999999999999999999999999999998887655543
No 389
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.00 E-value=3.1e+02 Score=29.20 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhcCC
Q 002718 768 EVAEEAASSLLQLDP 782 (888)
Q Consensus 768 ~~a~~~~~~~~~~~p 782 (888)
+.|...+++++...|
T Consensus 210 ~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 210 ESADEALQKAILRFP 224 (360)
T ss_pred hHHHHHHHHHHHHhH
Confidence 666666666666655
No 390
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.28 E-value=1.4e+02 Score=30.42 Aligned_cols=166 Identities=18% Similarity=0.164 Sum_probs=79.7
Q ss_pred cCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC--CCCHHHHH--HHHHHHHhCCCHHHHH
Q 002718 593 GNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP--KRDFVTWN--AMICGYAHHGLGEEAL 668 (888)
Q Consensus 593 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~--~li~~~~~~g~~~~A~ 668 (888)
.....+.+|+.+++..++.+- .. |-+..+...--...+.+. +.|+.+|- .|..+-.+.|+..+|.
T Consensus 227 EEa~Ti~~AE~l~k~ALka~e----~~-------yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 227 EEATTIVDAERLFKQALKAGE----TI-------YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhhhHHHHHHHHHHHHHHHH----HH-------HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 344556778888888777542 11 112111111111122222 23444443 2444455678888888
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 002718 669 KVFENMELENVKPNH---ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 669 ~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~ 745 (888)
+.|+.+.+. .|-. .....|+.+|....-+.+...++-+.- +... |...+ -|.-.++. ++..+-++
T Consensus 296 K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-disl-PkSA~-icYTaALL------K~RAVa~k- 363 (556)
T KOG3807|consen 296 KIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISL-PKSAA-ICYTAALL------KTRAVSEK- 363 (556)
T ss_pred HHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccC-cchHH-HHHHHHHH------HHHHHHhh-
Confidence 888877663 3411 234566777776665655555554432 1111 22211 11111111 12222222
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchH
Q 002718 746 PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 746 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
+.||...-+-|-.+- ..|.++..+++|.+|.-|...
T Consensus 364 -Fspd~asrRGLS~AE------~~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 364 -FSPETASRRGLSTAE------INAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred -cCchhhhhccccHHH------HHHHHHHHHHhhcCCCCcHHH
Confidence 345554433332221 357788888999998655443
No 391
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.20 E-value=2.4e+02 Score=27.57 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHH
Q 002718 765 GNVEVAEEAASSLLQLDPQ--DSSTYILLSNIYA 796 (888)
Q Consensus 765 g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 796 (888)
.|.-.+..++++..+++|. ++.-+-.|..+..
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ 242 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDLLD 242 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHH
Confidence 6777888888888888886 3333444444433
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.40 E-value=23 Score=33.94 Aligned_cols=58 Identities=26% Similarity=0.385 Sum_probs=43.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc
Q 002718 728 ILGRSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDS 785 (888)
Q Consensus 728 ~l~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 785 (888)
++.+.|+.+.|.+++.+. ...| ....|--+...--+.|+.+.|.+.+++.++++|+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445677777777777766 3434 566788777777788899999999999999988653
No 393
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.24 E-value=3.3e+02 Score=29.00 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchh-hcCCHHHHHHHHHh
Q 002718 589 LDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYS-KCGNVQDSRIMFEK 642 (888)
Q Consensus 589 l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~ 642 (888)
+..+.+.|-+..|.++.+.+.......|+.....+||.|+ ++++++.-.++.+.
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4456677777888888887777776667776677777775 56666666665554
No 394
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.17 E-value=4.7e+02 Score=30.49 Aligned_cols=93 Identities=9% Similarity=-0.156 Sum_probs=53.0
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCCcchHHHHHHHHHHcCCch
Q 002718 726 VDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLD---PQDSSTYILLSNIYADAGMWD 802 (888)
Q Consensus 726 ~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 802 (888)
+..|...|+..+|...+..+.-..++.....+...-...|..+.+..+..+....+ -..|..|.-...-+...-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34566778888888777766333555556666666667888888887776543221 012334555555555555566
Q ss_pred HHHHHHHHHHhCCCcc
Q 002718 803 KLSYTRRLMRQNKVRK 818 (888)
Q Consensus 803 ~a~~~~~~m~~~~~~~ 818 (888)
.+.-.--..++.+..+
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5543222223444433
No 395
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.06 E-value=3.2e+02 Score=29.80 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=31.5
Q ss_pred eHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 002718 448 SWNAIIAVQAQ---NGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAG 493 (888)
Q Consensus 448 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 493 (888)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++-.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34555555555 47889999999999999888776555555544433
No 396
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=49.64 E-value=36 Score=36.50 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=57.1
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhc---CC
Q 002718 658 YAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRS---GQ 734 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~---g~ 734 (888)
+...|++.+|+..|+.++.. ..+.........+++.+++.... +| .....+.+-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icr-EY-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICR-EY-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhccccc
Confidence 34679999999999887652 11111112223444444444333 11 111122222222 11
Q ss_pred HHH------HHHHHHhCCCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 002718 735 LNK------ALKLIQEMPFEADD--VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ 783 (888)
Q Consensus 735 ~~~------A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 783 (888)
.++ =-.+|....++|.. .++++.++.+.+++|+..|-.++++++++.|.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 222 22334444666643 46788888899999999999999999999884
No 397
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.44 E-value=2.3e+02 Score=27.83 Aligned_cols=112 Identities=10% Similarity=0.157 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHhCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002718 631 GNVQDSRIMFEKSP-KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVM 709 (888)
Q Consensus 631 g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 709 (888)
+++++|.+.+-.-. .++... -++.++...|+.+.|+.+++.+.-... +......++.+ ...+.+.||..+-+..
T Consensus 92 ~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 92 GDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 55666666554332 122222 366777778888888888876433211 22233333333 5568888888877665
Q ss_pred HhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH
Q 002718 710 LSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADD 751 (888)
Q Consensus 710 ~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~ 751 (888)
.+. -....+..++..+.....-....+.+-.+|+.+..
T Consensus 167 ~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 167 PDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred chh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 421 11345666666665444323333444445555443
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.70 E-value=53 Score=25.62 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=36.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 002718 660 HHGLGEEALKVFENMELENVKP-NH-ATFISVLRACAHIGLVEKGLHYFN 707 (888)
Q Consensus 660 ~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~ 707 (888)
...+.++|+..|+...+.-..| +. .++..++.+++..|++.+++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567789999999888754444 22 467788889999999988877543
No 399
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.67 E-value=3e+02 Score=27.72 Aligned_cols=106 Identities=12% Similarity=-0.016 Sum_probs=48.7
Q ss_pred cCChHHHHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHH----HHcCCCCCcchHHHHHHHHhccCChh-HHHH
Q 002718 428 CQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISM----LHAIMEPDEFTYGSVLKACAGQQALN-YGMQ 502 (888)
Q Consensus 428 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~ 502 (888)
.+++++|.+++..- ...+.+.|+...|.++-.-| .+.+.++|......++..+...+.-+ .-.+
T Consensus 3 ~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~ 71 (260)
T PF04190_consen 3 QKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKK 71 (260)
T ss_dssp TT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHH
T ss_pred cccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHH
Confidence 45566666655321 22344455544444333332 23455555555555555444332211 1222
Q ss_pred HHHHHHH---hCC--CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 002718 503 IHSRIIK---SGM--GSNLFVGSALIDMYCKCGMVEEAKKILKRTEE 544 (888)
Q Consensus 503 ~~~~~~~---~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 544 (888)
+.+.+++ .|- ..++.....+...|.+.|++.+|+.-|-.-..
T Consensus 72 fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~ 118 (260)
T PF04190_consen 72 FIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTD 118 (260)
T ss_dssp HHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-H
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 2233322 222 23667778888889999999988887754433
No 400
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.75 E-value=42 Score=24.87 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 002718 665 EEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLS 711 (888)
Q Consensus 665 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 711 (888)
+...++++.++. .+-|-.-...++.++.+.|++++|.++++.+..
T Consensus 7 ~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444443 233444555666777777777777777766653
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.18 E-value=1.7e+02 Score=24.49 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002718 496 ALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLK 575 (888)
Q Consensus 496 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 575 (888)
..++|..+.+.+...+- ....+--+-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666677776666653 333344444556788899999955444455678888876644 467777888888877776
Q ss_pred CCCCCCHHHH
Q 002718 576 MGVKPDDFTY 585 (888)
Q Consensus 576 ~g~~p~~~t~ 585 (888)
+| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444444
No 402
>PHA03100 ankyrin repeat protein; Provisional
Probab=47.15 E-value=4.5e+02 Score=29.31 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=8.1
Q ss_pred hhhcCCChhhHHHHhcc
Q 002718 222 MYAKCKKLDDSVSLFNR 238 (888)
Q Consensus 222 ~~~~~g~~~~A~~~~~~ 238 (888)
..++.|+.+-+..+++.
T Consensus 41 ~A~~~~~~~ivk~Ll~~ 57 (480)
T PHA03100 41 LAKEARNIDVVKILLDN 57 (480)
T ss_pred hhhccCCHHHHHHHHHc
Confidence 33444555555555443
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.70 E-value=4.2e+02 Score=31.35 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=91.1
Q ss_pred ccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 002718 624 VDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGL 703 (888)
Q Consensus 624 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 703 (888)
.+....||+++.|.+.-.++. +..+|..|+..-..+|+..-|...|++... |..|--.|.-.|+.++-.
T Consensus 650 F~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 650 FELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 455678999999998877765 556899999999999999999999988665 344444566778888876
Q ss_pred HHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002718 704 HYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQL 780 (888)
Q Consensus 704 ~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 780 (888)
+..+.+.. ..|.. .....-.-.|++++-.++++..+.-|-. |- . -..||.-+.|+++.+++-..
T Consensus 719 Km~~iae~----r~D~~---~~~qnalYl~dv~ervkIl~n~g~~~la--yl---t-a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 719 KMMKIAEI----RNDAT---GQFQNALYLGDVKERVKILENGGQLPLA--YL---T-AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHHHh----hhhhH---HHHHHHHHhccHHHHHHHHHhcCcccHH--HH---H-HhhcCcHHHHHHHHHhhccc
Confidence 66655532 22221 1111112368889988888887644322 11 1 13578888999998887663
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.49 E-value=62 Score=26.37 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=35.5
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 762 KIHGNVEVAEEAASSLLQLDPQD---------SSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 762 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
...||+..|.+.+.+.++..... ..+...++.++...|++++|...+++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35678888877777777653221 234567888899999999998776654
No 405
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.34 E-value=3.3e+02 Score=27.61 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=37.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcccHHHHHHHHHcCCChHHHHHHHH
Q 002718 512 MGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE-----RDVVSWNAIISGFSGAKRSEDAHKFFS 571 (888)
Q Consensus 512 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 571 (888)
-.++..+...+++.+++.+++..-.++++.... .|...|..+|......|+..-..++..
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 355555666666666666666666666655432 366677777777777777654444433
No 406
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.74 E-value=2.5e+02 Score=29.91 Aligned_cols=55 Identities=20% Similarity=0.010 Sum_probs=33.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHh--cCCHHHHHHHHHH
Q 002718 654 MICGYAHHGLGEEALKVFENMELENVKPNHAT----FISVLRACAH--IGLVEKGLHYFNV 708 (888)
Q Consensus 654 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~--~g~~~~a~~~~~~ 708 (888)
.+..+...+++..|.++|+++.+....|.... |..+..+|.. .-++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456678889999999999988765554433 2233333332 3455666666654
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=45.68 E-value=44 Score=22.69 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=13.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHC
Q 002718 553 IISGFSGAKRSEDAHKFFSYMLKM 576 (888)
Q Consensus 553 li~~~~~~g~~~~A~~~~~~m~~~ 576 (888)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555566666666666665543
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.13 E-value=79 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 002718 746 PFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDP 782 (888)
Q Consensus 746 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 782 (888)
...|++.++..++.++...|+.++|+...+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3578888888888888888888888888888888888
No 409
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=44.95 E-value=31 Score=34.47 Aligned_cols=59 Identities=19% Similarity=0.382 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHH
Q 002718 731 RSGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYI 789 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 789 (888)
+.|+.++|..+|+.. .+.| ++.+.--+....-.++++-+|.+.+-+++...|.+..+.+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 344444444444432 2333 2223333333333444555555555555555555544443
No 410
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.55 E-value=1e+02 Score=26.02 Aligned_cols=27 Identities=7% Similarity=0.268 Sum_probs=24.9
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHH
Q 002718 549 SWNAIISGFSGAKRSEDAHKFFSYMLK 575 (888)
Q Consensus 549 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 575 (888)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999887
No 411
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.33 E-value=46 Score=38.51 Aligned_cols=96 Identities=23% Similarity=0.290 Sum_probs=68.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHH
Q 002718 690 LRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGNVEV 769 (888)
Q Consensus 690 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 769 (888)
+.-+.+.|..+-|+.+.+.=... .++....|+++.|++...+. .|+.+|..|+..-..+||.+.
T Consensus 627 IaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~I 690 (1202)
T KOG0292|consen 627 IAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQI 690 (1202)
T ss_pred HHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchHH
Confidence 44455667666666655433222 23455789999999988875 378899999999889999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHH
Q 002718 770 AEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRR 809 (888)
Q Consensus 770 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 809 (888)
|+..+++.-.- ..|+-+|.-.|+.++-.++-+
T Consensus 691 aEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 691 AEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHH
Confidence 99999987543 446677778888776544433
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.39 E-value=1.2e+02 Score=26.05 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=36.8
Q ss_pred hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchH
Q 002718 744 EMPFEADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 744 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
.+.+-|++.+..+-|.+|++-+|+..|.++++-+-.+-+.....|
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y 121 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVY 121 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHH
Confidence 446789999999999999999999999999999877655433333
No 413
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.29 E-value=2.6e+02 Score=25.11 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.9
Q ss_pred CcccHHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCc
Q 002718 546 DVVSWNAIISGFSGAKR-SEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNL 595 (888)
Q Consensus 546 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 595 (888)
+-.+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 45678888888865555 345678888888888899999999999988765
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.67 E-value=1.3e+02 Score=24.10 Aligned_cols=64 Identities=6% Similarity=-0.016 Sum_probs=41.0
Q ss_pred hHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHH
Q 002718 198 VQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEA 263 (888)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 263 (888)
.++++..++.|+- +......+-..--..|+.+.|+++++.++ +....|...++++-..|.-.-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4556666666632 22222222222225688889999998888 8888888888888877765544
No 415
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.22 E-value=2.1e+02 Score=28.66 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=46.6
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHH
Q 002718 757 LLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLM 811 (888)
Q Consensus 757 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 811 (888)
+=+++...+.++.|....++++.++|+++.-..--|-+|++.|...-|.+-....
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 3346777889999999999999999999988888999999999999888877653
No 416
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.04 E-value=5.3e+02 Score=28.45 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=87.2
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhcc
Q 002718 546 DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVD 625 (888)
Q Consensus 546 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 625 (888)
|-....+++..+.++.++.-...+..+|..-| -+...|..+++.|... ..+.-..+|+++.+..+ .|+.....|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44456677777777777777777788887753 4566777777777766 44555667777766655 34445555666
Q ss_pred chhhcCCHHHHHHHHHhCCC------CCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 002718 626 MYSKCGNVQDSRIMFEKSPK------RDF---VTWNAMICGYAHHGLGEEALKVFENMELE-NVKPNHATFISVLRACAH 695 (888)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~ 695 (888)
.|-+ ++.+.+...|.++.. .+. ..|..++..- -.+.+..+.+....... |..--.+.+.-+-.-|+.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 6655 666666666655431 111 1444443211 13344444444444332 222222334444445555
Q ss_pred cCCHHHHHHHHHHhH
Q 002718 696 IGLVEKGLHYFNVML 710 (888)
Q Consensus 696 ~g~~~~a~~~~~~m~ 710 (888)
..++++|++++..+.
T Consensus 218 ~eN~~eai~Ilk~il 232 (711)
T COG1747 218 NENWTEAIRILKHIL 232 (711)
T ss_pred ccCHHHHHHHHHHHh
Confidence 555566655555554
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=41.04 E-value=4.2e+02 Score=27.30 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 002718 686 FISVLRACAHIGLVEKGLHYFNV 708 (888)
Q Consensus 686 ~~~ll~a~~~~g~~~~a~~~~~~ 708 (888)
......-|++.|+.+.|.+.+.+
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33344445555555555544443
No 418
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.95 E-value=1.7e+02 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHH
Q 002718 528 KCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDA 566 (888)
Q Consensus 528 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 566 (888)
..|+.+.|.+++..+. +....|..++.++...|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4577777777777777 7777777777777777665444
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.90 E-value=3.9e+02 Score=26.87 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=39.6
Q ss_pred CcchhhhhccchhhcCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 002718 616 DVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATF--ISVLRAC 693 (888)
Q Consensus 616 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~ 693 (888)
|+.....+...|.+.|++.+|+.-|=....++...+..++.- . ...|...+...| .+++ -|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~---------------~-~~~~~~~e~dlfi~RaVL-~y 151 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEE---------------W-STKGYPSEADLFIARAVL-QY 151 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH---------------H-HHHTSS--HHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHH---------------H-HHhcCCcchhHHHHHHHH-HH
Confidence 456666777778888888888766644433333222112211 1 122222222222 2233 35
Q ss_pred HhcCCHHHHHHHHHHhHhc
Q 002718 694 AHIGLVEKGLHYFNVMLSD 712 (888)
Q Consensus 694 ~~~g~~~~a~~~~~~m~~~ 712 (888)
...|+...|...++...+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5567788888777766543
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.08 E-value=1.3e+02 Score=25.45 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=24.2
Q ss_pred eeHHHHHHHHHhCCChhHHHHHHHHHHH
Q 002718 447 VSWNAIIAVQAQNGNEEETLFYFISMLH 474 (888)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 474 (888)
.-|..++..|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4688899999999999999999988877
No 421
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.79 E-value=6.6e+02 Score=29.17 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=20.2
Q ss_pred CHHHHHH-----HHHHHHhCCCHHHHHHHHHHHHH
Q 002718 647 DFVTWNA-----MICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 647 ~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
....|.. +...+...|+.++|.....+...
T Consensus 571 ~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 571 SDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4456643 33446778999999888877654
No 422
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=39.29 E-value=6.7e+02 Score=29.12 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC---CCCcccHHHHHHHHHcCCCh-------HHHHHHHHHHHHCCCCCCHH
Q 002718 521 ALIDMYCKCGMVEEAKKILKRTE---ERDVVSWNAIISGFSGAKRS-------EDAHKFFSYMLKMGVKPDDF 583 (888)
Q Consensus 521 ~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~ 583 (888)
++|-.+.|+|++++|.++..+.. ++....+-..+..|....+. +....-|++..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 45566777888888887773333 23344566666666654322 34455566555543333543
No 423
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.73 E-value=5.6e+02 Score=28.07 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=46.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCC
Q 002718 759 SICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPG 821 (888)
Q Consensus 759 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 821 (888)
.++..-.++..+.+-.+.++-...+.+.+..+-++.++..|++.+|.++... .++.+.||
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g 273 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccC
Confidence 4455566777888888888877778888899999999999999999887653 34445444
No 424
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=38.36 E-value=3.7e+02 Score=25.91 Aligned_cols=62 Identities=13% Similarity=-0.028 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc-cHHHHHH--HHHcCCChHHHHHHHHHHHHC
Q 002718 515 NLFVGSALIDMYCKCGMVEEAKKILKRTEERDVV-SWNAIIS--GFSGAKRSEDAHKFFSYMLKM 576 (888)
Q Consensus 515 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~ 576 (888)
-+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+=. ++--.|+++-|.+-|.+.-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 4567888877788888888888888888765543 2222222 223357777777666655543
No 425
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=38.21 E-value=5.2e+02 Score=27.47 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCC-----HHHHHHH---HHHHHHhCCHHHHHHHHHHHHhcCCCC-------cch
Q 002718 723 SCMVDILGRSGQLNKALKLIQEMPFEAD-----DVIWRTL---LSICKIHGNVEVAEEAASSLLQLDPQD-------SST 787 (888)
Q Consensus 723 ~~l~~~l~~~g~~~~A~~~~~~~~~~p~-----~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~ 787 (888)
..|+..+-..|++++|.+++.+.+++.- ......+ +..|...+|+-.|..+.+++....-++ ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 4577888899999999999998864431 1112222 356888999999999999987763222 336
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCEEEEEee
Q 002718 788 YILLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDKVHTFLV 836 (888)
Q Consensus 788 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~ 836 (888)
|.++..+....+.+=++.+.++.+-+-|..+....-|+++-..+..|..
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 8889999999999999999999998887777666668877666655654
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.13 E-value=88 Score=29.73 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 679 VKPNHATFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 679 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
..|+..+|..++.++...|+.++|.....++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666666666666666666666666665
No 427
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.83 E-value=3.7e+02 Score=25.66 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHAT-FISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~ 710 (888)
...+.++..+...|+++.|-+.|--+.... ..|... |..=+..+.+.+.-....++++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 456778888889999999999999888732 225433 2222334444444333334444444
No 428
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.75 E-value=6.7e+02 Score=28.66 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=24.8
Q ss_pred hcCChhHHHHHHHHHHH-------cCCCCChhhHHHHHHHhhcCC-----ChhHHHHHHHHHHHhCC
Q 002718 256 QNYKFIEALKLFKIMQK-------IGVGISQSTYASILRSCAALS-----NLKLGTQLHAHALKTDF 310 (888)
Q Consensus 256 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g~ 310 (888)
...+.+.|+.+|....+ .| ++....-+-..|.+.. +...|..++....+.|.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~ 324 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN 324 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC
Confidence 34556666666666554 33 2223333333333321 34455666655555553
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.70 E-value=2.8e+02 Score=24.19 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 002718 666 EALKVFENMELENVKPNH-ATFISVLRACAHIGLVEKGLHYFNV 708 (888)
Q Consensus 666 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 708 (888)
++.++|+.|...|+--.. ..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 778888888887776644 4566777777778888888877764
No 430
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.57 E-value=2.5e+02 Score=31.26 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=10.5
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 002718 728 ILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 728 ~l~~~g~~~~A~~~~~~~ 745 (888)
.+.|.+++++|.-+.-..
T Consensus 503 hLLR~~rfekAFlLAvdi 520 (545)
T PF11768_consen 503 HLLRYQRFEKAFLLAVDI 520 (545)
T ss_pred HHHHhhHHHHHHHHHHhc
Confidence 344566667666655544
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.35 E-value=1e+02 Score=21.35 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=20.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002718 255 VQNYKFIEALKLFKIMQKIGVGISQSTYASILR 287 (888)
Q Consensus 255 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 287 (888)
.+.|-..++..++++|.+.|+..+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 355666666667777776666666666655554
No 432
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.00 E-value=8.8e+02 Score=29.82 Aligned_cols=254 Identities=8% Similarity=-0.016 Sum_probs=131.5
Q ss_pred HHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCc
Q 002718 436 HVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSN 515 (888)
Q Consensus 436 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 515 (888)
.+...+..+|...--..+..+.+.+. +++...+...++ .+|...-...+.++...+........+..+.+ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 44444455565555555555555554 334444444443 23333333444444333221111122222222 245
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCc
Q 002718 516 LFVGSALIDMYCKCGMVEEAKKILKRTEERDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNL 595 (888)
Q Consensus 516 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 595 (888)
..+-...++.+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555655544321 122344555566665555556666555443321 1122 144555555555566555
Q ss_pred ccHHH-HHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHH-HHHHhCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002718 596 ATVGL-GMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSR-IMFEKSPKRDFVTWNAMICGYAHHGLGEEALKVFEN 673 (888)
Q Consensus 596 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 673 (888)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+..++...-...+.++...+. +++...+-.
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333332 355666777777788887765543 34444456666666667777777765 456676666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 002718 674 MELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLS 711 (888)
Q Consensus 674 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 711 (888)
+.+ .|+...-...+.++.+.+....+...+....+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 665 67777767777777775444567777777664
No 433
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.54 E-value=1.9e+02 Score=24.97 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHH
Q 002718 667 ALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMV 726 (888)
Q Consensus 667 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 726 (888)
..+-++.+..-.+-|+......-++||.+.+++.-|..+|+.++.+.| +....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 344455666667889999999999999999999999999998875544 3333455554
No 434
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=36.29 E-value=2.1e+02 Score=28.74 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=13.8
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 002718 250 VIAGCVQNYKFIEALKLFKIM 270 (888)
Q Consensus 250 li~~~~~~g~~~~A~~~~~~m 270 (888)
=|.+++..+++.+++.+.-+-
T Consensus 89 GIQALAEmnrWreVLsWvlqy 109 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQY 109 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHH
Confidence 366777777777777655444
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.81 E-value=69 Score=32.44 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVL 690 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 690 (888)
.-|+..|..-.+.||+++|+.+++|..+.|+.--..+|..-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 457889999999999999999999999998776556665443
No 436
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.43 E-value=6.3e+02 Score=27.70 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=61.0
Q ss_pred HHHhCCCHHHHHHHHHHHH---HCC--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHh------ccCCCCCh---
Q 002718 657 GYAHHGLGEEALKVFENME---LEN--VKPNH---ATFISVLRACAHIGLVEKGLHYFNVMLS------DYSLHPQL--- 719 (888)
Q Consensus 657 ~~~~~g~~~~A~~~~~~m~---~~g--~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~------~~~~~p~~--- 719 (888)
-+..+|++.+|.+++...- ..| +.|.- ..++.|.-.+.+.|.+.-+..+|.+... ..|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556788888887765432 112 12211 1235555555666777777777766653 12444421
Q ss_pred --------hHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 002718 720 --------EHYSCMVDILGRSGQLNKALKLIQEM--PFEADDVIWRTLLSICKI 763 (888)
Q Consensus 720 --------~~~~~l~~~l~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~ 763 (888)
..|+| .-.|...|++-.|.+-|.+. .+..+|..|--|..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 13443 33455677777777777665 366677788887777754
No 437
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.59 E-value=2.1e+02 Score=30.70 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=39.2
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChh--HHHHHHHHHh--hcCCHHHHHHHHHhCC
Q 002718 692 ACAHIGLVEKGLHYFNVMLSDYSLHPQLE--HYSCMVDILG--RSGQLNKALKLIQEMP 746 (888)
Q Consensus 692 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~l~~~l~--~~g~~~~A~~~~~~~~ 746 (888)
.....+++..|.++|+.+... +.++.. .|..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 445789999999999999854 555554 4555555554 5778899999999763
No 438
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=34.08 E-value=45 Score=25.84 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCccc
Q 002718 845 EEIYEKLGLLIGEMKWRGCASDVNY 869 (888)
Q Consensus 845 ~~i~~~l~~l~~~~~~~g~~~~~~~ 869 (888)
.++.+.+++...+++.+||.||.++
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4677888888999999999999444
No 439
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=34.05 E-value=8.1e+02 Score=28.53 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=54.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHcCCc--hHHHHHHHHHHhCCCcc-CCC---------
Q 002718 757 LLSICKIHGNVEVAEEAASSLLQLDPQD---SSTYILLSNIYADAGMW--DKLSYTRRLMRQNKVRK-EPG--------- 821 (888)
Q Consensus 757 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~~~-~~~--------- 821 (888)
|.-+|.-.|+ ..|..+++-+.. +|.+ -++.+.++-+..++... .+...+|+...+.-..| +.+
T Consensus 613 LGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 613 LGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILA 690 (929)
T ss_pred HhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3335555554 467777777766 6643 45666777777666543 35677788776654433 322
Q ss_pred eeEEEECCEEEEEeeC-CCCCCChHHHHHHH
Q 002718 822 CSWIGVNDKVHTFLVR-DKDHPKCEEIYEKL 851 (888)
Q Consensus 822 ~s~i~~~~~~~~f~~~-~~~~~~~~~i~~~l 851 (888)
.-.++.+|+-.+|... ...|+....+-..+
T Consensus 691 qGildaGGrNvtislqs~tg~~~~~~vvGl~ 721 (929)
T KOG2062|consen 691 QGILDAGGRNVTISLQSMTGHTKLDAVVGLV 721 (929)
T ss_pred hhhhhcCCceEEEEEeccCCCCchHHHHHHH
Confidence 3356666766666553 35577766665543
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.90 E-value=1.5e+02 Score=20.48 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002718 658 YAHHGLGEEALKVFENMELENVKPNHATFISVLR 691 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 691 (888)
..+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777766666655543
No 441
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.37 E-value=1.3e+02 Score=27.96 Aligned_cols=49 Identities=20% Similarity=0.311 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHH
Q 002718 756 TLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLS 805 (888)
Q Consensus 756 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 805 (888)
..+..|.+.|.+++|+++++++++ +|++...-..|..+-.+...+....
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~l 164 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVL 164 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHH
Confidence 345578888889999999888888 7766555555555544444444443
No 442
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.28 E-value=62 Score=23.95 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002718 647 DFVTWNAMICGYAHHGLGEEALKVFENMEL 676 (888)
Q Consensus 647 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 676 (888)
|..---.+|.||.+.|++++|.+..+++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455678999999999999999888765
No 443
>PRK14015 pepN aminopeptidase N; Provisional
Probab=33.13 E-value=9.8e+02 Score=29.21 Aligned_cols=124 Identities=14% Similarity=0.125 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 002718 682 NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-EHYSCMVDILGRSGQLNKALKLIQEMPFEA-DDVIWRTLLS 759 (888)
Q Consensus 682 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~ 759 (888)
|..--.+-+.++.+.+. .+....++..-++..-.|-. .-|-.+...--+.+-++...++.+.-.+.+ ++--.++|++
T Consensus 713 ~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~ 791 (875)
T PRK14015 713 NMTDRLAALSALVNADL-PERDEALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIG 791 (875)
T ss_pred CHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence 33333344445554433 22233333333333334432 245444443333444555555544433443 5666788888
Q ss_pred HHHHhC-------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHH
Q 002718 760 ICKIHG-------NVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSY 806 (888)
Q Consensus 760 ~~~~~g-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 806 (888)
++...+ +-+.=.-+.+.++++++-||..-..|...+.+-.++++..+
T Consensus 792 ~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 792 AFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred HHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 875432 22344667788899999999999999999999999998754
No 444
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.33 E-value=7.1e+02 Score=27.35 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCC--------HHHHHHHHHHHH
Q 002718 634 QDSRIMFEKSPKRD----------FVTWNAMICGYAHHGLGEEALKVFENMEL-ENVKPN--------HATFISVLRACA 694 (888)
Q Consensus 634 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~--------~~t~~~ll~a~~ 694 (888)
|+|+...++....| +.+...++.+-.-.|++.+|++-...|.+ ..-.|. ......+..-|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhHH--HHHHHHHhhcCCHHHHHHHHHhCCCCCC----------HHHHHHHHHHHH
Q 002718 695 HIGLVEKGLHYFNVMLSDYSLHPQLEHY--SCMVDILGRSGQLNKALKLIQEMPFEAD----------DVIWRTLLSICK 762 (888)
Q Consensus 695 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l~~~l~~~g~~~~A~~~~~~~~~~p~----------~~~~~~ll~~~~ 762 (888)
..|.++.|..-|....+. --.-+...+ ..+.-.|.+.|+-+.-.++++..+ +|+ ..++-...-...
T Consensus 379 sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf 456 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAF 456 (629)
T ss_pred hcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHH
Q ss_pred HhCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHHcCCchHHHHH
Q 002718 763 IHGNVEVAEEAASSLLQLDPQ------DSSTYILLSNIYADAGMWDKLSYT 807 (888)
Q Consensus 763 ~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~ 807 (888)
.++++.+|+....+.++..-- ..-..++|+.+....|+..++.+.
T Consensus 457 ~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 457 KQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNM 507 (629)
T ss_pred HhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhc
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.10 E-value=6.6e+02 Score=26.89 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhc--------cCCCC
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNH----ATFISVLRACAHIGLVEKGLHYFNVMLSD--------YSLHP 717 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--------~~~~p 717 (888)
.+.-+..-|...|+.+.|++.|-+.+. +..+. ..|..++..-.-.|+|.....+..+.... ..+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~Rd--YCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARD--YCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhh--hhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 556677889999999999999999666 33322 24666666667778887777776666532 13445
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHH-HHHHhCCHH---HHHHHHHHHHhcCCC
Q 002718 718 QLEHYSCMVDILGRSGQLNKALKLIQEMP---------FEA-DDVIWRTLLS-ICKIHGNVE---VAEEAASSLLQLDPQ 783 (888)
Q Consensus 718 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---------~~p-~~~~~~~ll~-~~~~~g~~~---~a~~~~~~~~~~~p~ 783 (888)
....+..++.+..+ ++..|.+.+-... +.| |..+|..|-. ++..+.++. ..-..|+..++++|+
T Consensus 230 kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 56667777776665 6666655554331 223 4555655433 222233333 234567888888884
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.77 E-value=72 Score=32.32 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 002718 246 SWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASIL 286 (888)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 286 (888)
-||..|....+.|+.++|+.++++..+.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47889999999999999999999999998776555554443
No 447
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.47 E-value=6.7e+02 Score=26.81 Aligned_cols=18 Identities=6% Similarity=-0.226 Sum_probs=9.4
Q ss_pred hhhcCCHHHHHHHHHhCC
Q 002718 627 YSKCGNVQDSRIMFEKSP 644 (888)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~ 644 (888)
+.+.+++..|.++|+++.
T Consensus 140 l~n~~dy~aA~~~~~~L~ 157 (380)
T TIGR02710 140 AINAFDYLFAHARLETLL 157 (380)
T ss_pred HHHhcChHHHHHHHHHHH
Confidence 344555555555555544
No 448
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.37 E-value=5e+02 Score=25.29 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHH
Q 002718 649 VTWNAMICGYAHHGLGEEALKVFENMELENVKP---NHATF--ISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYS 723 (888)
Q Consensus 649 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 723 (888)
.-.|.||--|..+..+.+|.+.|.. +.|+.| |..++ ..-+......|++++|++..++.... -+.-+.+.+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHH
Confidence 4456666666666556666666643 444555 33333 33455667888888888888776422 2223332222
Q ss_pred HHH----HHHhhcCCHHHHHHHHHhC
Q 002718 724 CMV----DILGRSGQLNKALKLIQEM 745 (888)
Q Consensus 724 ~l~----~~l~~~g~~~~A~~~~~~~ 745 (888)
.|. -=+.|.|..++|+++.+.-
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 1245788899999888753
No 449
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.34 E-value=53 Score=28.62 Aligned_cols=34 Identities=32% Similarity=0.491 Sum_probs=26.0
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 002718 557 FSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTC 592 (888)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 592 (888)
....|.-.+|..+|++|.+.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999985 56666554
No 450
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.22 E-value=63 Score=28.20 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=24.7
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 002718 457 AQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKAC 491 (888)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 491 (888)
-..|.-..|..+|.+|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3457777899999999999998886 45555443
No 451
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=31.21 E-value=1e+03 Score=28.93 Aligned_cols=151 Identities=13% Similarity=0.101 Sum_probs=80.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hHHHHHHHHHh
Q 002718 652 NAMICGYAHHGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQL-EHYSCMVDILG 730 (888)
Q Consensus 652 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~ 730 (888)
|..+.-++..++.+......++..+. .|..--.+-+.++.+.+. .+....++..-++..-.|-. .-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 33444444445443333333333332 233323334444443333 22223333333333333432 23444443333
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCch
Q 002718 731 RSGQLNKALKLIQEMPFEA-DDVIWRTLLSICKIHG-------NVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWD 802 (888)
Q Consensus 731 ~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 802 (888)
..+-++...++.+.-.+.+ ++--.++|++++...+ +-+.=.-+.+.++++++-||..-..|...+..-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 3344455555544433433 5666788888875332 2234466788889999999999999999999999999
Q ss_pred HHHH
Q 002718 803 KLSY 806 (888)
Q Consensus 803 ~a~~ 806 (888)
+..+
T Consensus 832 ~~r~ 835 (863)
T TIGR02414 832 PKRQ 835 (863)
T ss_pred HHHH
Confidence 8754
No 452
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.04 E-value=5.8e+02 Score=25.95 Aligned_cols=131 Identities=10% Similarity=-0.072 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcC----
Q 002718 662 GLGEEALKVFENMELENVKPNHATFISVLRACAH----IGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSG---- 733 (888)
Q Consensus 662 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g---- 733 (888)
.+..+|.++|+.+.+.|..+ ....|...+.. ..+..+|..+|+++... |..+.......+...|..-+
T Consensus 91 ~~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~ 166 (292)
T COG0790 91 RDKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALA 166 (292)
T ss_pred ccHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhc
Confidence 34566667776655544222 22223333333 23666777777776533 44333122233333333321
Q ss_pred ---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcC
Q 002718 734 ---QLNKALKLIQEMPFEADDVIWRTLLSICKI----HGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAG 799 (888)
Q Consensus 734 ---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 799 (888)
+...|...+.++...-++.....+...|.. ..|.+.|..-++++-+.+. ......++ ++...|
T Consensus 167 ~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 167 VAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred ccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 223566666665322233333333333321 2378888888888888876 66666677 666555
No 453
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.45 E-value=1.7e+02 Score=23.28 Aligned_cols=62 Identities=13% Similarity=0.102 Sum_probs=41.1
Q ss_pred hHHHHHHHHhCCCCChhhHHHHHHhhhcCCChhhHHHHhcccCCCChhHHHHHHHHHHhcCChhHH
Q 002718 198 VQLHCFAMKMGFDKDVVTGSALVDMYAKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEA 263 (888)
Q Consensus 198 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 263 (888)
..++..+.+.|+ .+....-...+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345555566553 23333333445566788888888888888888888888888777654433
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=28.93 E-value=3.2e+02 Score=22.19 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=28.4
Q ss_pred HhCCCHHHHHHHHHHHHH----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 002718 659 AHHGLGEEALKVFENMEL----ENVKPN----HATFISVLRACAHIGLVEKGLHYFNVMLS 711 (888)
Q Consensus 659 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 711 (888)
.+.|++..|.+.+.+..+ .+..+. ......+.......|..++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555444433 222221 12233344456666777777777776653
No 455
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=28.38 E-value=76 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=19.3
Q ss_pred HhcCChhHHHHHHhcCCCCCcchhhHHHHHHHhcCc
Q 002718 92 IKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGE 127 (888)
Q Consensus 92 ~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 127 (888)
+...+.+.|.++++..+.++...|.++..++...|.
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 344455555556665555555555555555554443
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.07 E-value=1.7e+02 Score=29.17 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=7.3
Q ss_pred HHhcCCHHHHHHHHHHh
Q 002718 693 CAHIGLVEKGLHYFNVM 709 (888)
Q Consensus 693 ~~~~g~~~~a~~~~~~m 709 (888)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44444444444444433
No 457
>PRK13342 recombination factor protein RarA; Reviewed
Probab=27.82 E-value=8.2e+02 Score=26.65 Aligned_cols=101 Identities=15% Similarity=0.049 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCCcchhhhhccchhhcCCHHHHHHHHHhCC---CCCHHHHHHHH
Q 002718 579 KPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMI 655 (888)
Q Consensus 579 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 655 (888)
..+......++..+ .|+...+..+++.+...+... ..+...+++.... .++......++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 45555555555544 678888888777765431111 1222223332211 22222344445
Q ss_pred HHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 002718 656 CGYAH---HGLGEEALKVFENMELENVKPNHATFISVLRACAHIG 697 (888)
Q Consensus 656 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 697 (888)
+++.+ .++.+.|+.++.+|.+.|..|....-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 4789999999999999998887666555555554444
No 458
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.78 E-value=5.6e+02 Score=28.75 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCC----------ChhHHHHHHHHHhhcCCHHHHHHHHHhC------CCCCC------
Q 002718 693 CAHIGLVEKGLHYFNVMLSDYSLHP----------QLEHYSCMVDILGRSGQLNKALKLIQEM------PFEAD------ 750 (888)
Q Consensus 693 ~~~~g~~~~a~~~~~~m~~~~~~~p----------~~~~~~~l~~~l~~~g~~~~A~~~~~~~------~~~p~------ 750 (888)
+.+...++++...|.-....+...- .+.+.-.|.+++..+|+.+-|-+++++. -+.|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred --------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH
Q 002718 751 --------------DVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQ-DSSTYILLSNIYA 796 (888)
Q Consensus 751 --------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~ 796 (888)
-.+.-..+....+.|-+..|.+..+-++.++|. ||-....+.++|+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 459
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.49 E-value=1.1e+03 Score=28.13 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=39.1
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH-hcCcccHHHHHHHHHHHHHhC----CCCCcchhhhhc
Q 002718 557 FSGAKRSEDAHKFFSYMLKMGVKPDDF-------TYATLLDT-CGNLATVGLGMQLHAQIIKQE----MQSDVYISSTLV 624 (888)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li 624 (888)
.....++.+|..+..++...-..|+.. .+..+-.. ....|+++.+..+.+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888777766532222221 12221111 123456666666555554431 112233333444
Q ss_pred cchhhcCCHHHHHHHHH
Q 002718 625 DMYSKCGNVQDSRIMFE 641 (888)
Q Consensus 625 ~~~~~~g~~~~A~~~~~ 641 (888)
.+..-.|+++.|..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~ 521 (894)
T COG2909 505 EAAHIRGELTQALALMQ 521 (894)
T ss_pred HHHHHhchHHHHHHHHH
Confidence 44444455555544433
No 460
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=27.16 E-value=3.4e+02 Score=25.90 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHHcCCchHHHHHHHHHHhCCCccCCCeeEEEECCE
Q 002718 752 VIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYI-LLSNIYADAGMWDKLSYTRRLMRQNKVRKEPGCSWIGVNDK 830 (888)
Q Consensus 752 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 830 (888)
.....++..|..+||++.|-+++--++...+-|....- .=+.++...+.-....+.++.|...-.....-.....-...
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 34667777788888888888888888877655544433 33345555555555445555553211111000011111123
Q ss_pred EEEEeeCCCCCCC
Q 002718 831 VHTFLVRDKDHPK 843 (888)
Q Consensus 831 ~~~f~~~~~~~~~ 843 (888)
.+.|.+|.+.|.-
T Consensus 122 ~pvfrsGs~t~tp 134 (199)
T PF04090_consen 122 APVFRSGSRTHTP 134 (199)
T ss_pred cccccCCCcccch
Confidence 4678888888843
No 461
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.82 E-value=1.2e+02 Score=29.45 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 762 KIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 762 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
.+.+|.+-+.+++.+++++-|+....+..++..-.+.|+.+.|.+-++...+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999999999999999999999999888877665443
No 462
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.47 E-value=3.2e+02 Score=30.46 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 002718 246 SWNTVIAGCVQNYKFIEALKLFKIMQK 272 (888)
Q Consensus 246 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 272 (888)
.-..++.-|.+.++.++|+.++..|.-
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 344567777778888888887777753
No 463
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.37 E-value=3.9e+02 Score=26.63 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002718 634 QDSRIMFEKSPKRDFVTW--NAMICGYAHHGLGEEALKVFENMEL----ENVK-PNHATFISVLRACAHIGLVEKGLHYF 706 (888)
Q Consensus 634 ~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~ 706 (888)
+.|.+.|......-...+ -.|...|...|++++|+++|+.+.. .|-. +...+...+..+..+.|+.+..+.+-
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555443333322 3466778899999999999988743 2222 23445666677777888888777665
Q ss_pred HHh
Q 002718 707 NVM 709 (888)
Q Consensus 707 ~~m 709 (888)
-++
T Consensus 242 leL 244 (247)
T PF11817_consen 242 LEL 244 (247)
T ss_pred HHH
Confidence 444
No 464
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=26.18 E-value=5.2e+02 Score=31.77 Aligned_cols=99 Identities=12% Similarity=0.086 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHH-
Q 002718 686 FISVLRACAHIG--LVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEMPFE-ADDVIWRTLLSIC- 761 (888)
Q Consensus 686 ~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~- 761 (888)
+..++.+|.+.+ ++++|+....++.+. +...|.+.++-+-+= +-...|+..|+.|
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YD 873 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAEEALKYLCFLVDVNKLYDVALGTYD 873 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHHHHHhHheeeccHHHHHHHHhhhcC
Confidence 445666776666 777777777776632 223333333333221 2223455555444
Q ss_pred ---------HHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHH
Q 002718 762 ---------KIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 762 ---------~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
..+.|..+=+-.++++-++.|.. .--.+=...|+|++|++-..+
T Consensus 874 l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~-----rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 874 LELALMVAQQSQKDPKEYLPFLQELQKLPPLY-----RRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHhCChhh-----eeeeHhhhhCCHHHHHHHHHh
Confidence 23444455555555554444421 122233456888888776543
No 465
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=25.75 E-value=7.8e+02 Score=25.69 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhh---cCCHHHHH
Q 002718 664 GEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGR---SGQLNKAL 739 (888)
Q Consensus 664 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~---~g~~~~A~ 739 (888)
.+.-+.++++.++. .| +......++..+.+....++..+-++++...+.- +...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45667788888875 66 4456777888888888888888888888855322 34455555554332 12344444
Q ss_pred HHHHhC-------CCC------C----CHHHHHHHH---HHHHHhCCHHHHHHHHHHHHhcC
Q 002718 740 KLIQEM-------PFE------A----DDVIWRTLL---SICKIHGNVEVAEEAASSLLQLD 781 (888)
Q Consensus 740 ~~~~~~-------~~~------p----~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~ 781 (888)
+.|.+. ... + +......++ ..++..|..+.|..+++-++|++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444332 111 1 122223333 33567899999999999999985
No 466
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=7.1e+02 Score=25.15 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=34.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 002718 656 CGYAHHGLGEEALKVFENMELENVKPNHA-------TFISVLRACAHIGLVEKGLHYF 706 (888)
Q Consensus 656 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~~~ 706 (888)
+-..+.+++++|+..+.+....|+..|.. +...+...|...|++..-.+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34556678899999999998888776654 3445556666666655444433
No 467
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=25.37 E-value=6.3e+02 Score=24.50 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCC----CHHHHH-HHHHHHHhcCCHHHHHHHHHHhHhccC
Q 002718 664 GEEALKVFENMELENVKP----NHATFI-SVLRACAHIGLVEKGLHYFNVMLSDYS 714 (888)
Q Consensus 664 ~~~A~~~~~~m~~~g~~p----~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~ 714 (888)
...|++.|.+..+..-.| +..+.. .+.....+.|+.++|.+.|.++....+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 345666666665543332 222332 333455667777777777777765433
No 468
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.72 E-value=8.1e+02 Score=25.52 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHhHhccCCCCChh-HHHHHHHHHhhcCCHH
Q 002718 664 GEEALKVFENMELENVKPNHATFISVLRACAHI------GLVEKGLHYFNVMLSDYSLHPQLE-HYSCMVDILGRSGQLN 736 (888)
Q Consensus 664 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~ 736 (888)
+++++.++++....+. |-.......+.+|-.. -+|..-..+|+.+. .+.|++. +.|--+ +++..--.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHH-HHHHhhhHH
Confidence 4677778888777764 7777766666655321 24556666666655 3445543 222222 223333355
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchH
Q 002718 737 KALKLIQEMPFEA----DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTY 788 (888)
Q Consensus 737 ~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 788 (888)
.++..++...-+| -...+..-.+.+.+.|..++|...|++++++.++....-
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 6666666654332 233455566678888999999999999999887654443
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.24 E-value=6.2e+02 Score=23.98 Aligned_cols=173 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCccHHHHHHHHHhCCChhHHHHHHHHHHHcC--------CCCCchhHhhHHHHhhhhhchhhHHHHHHHHHHhcCCCch
Q 002718 344 GLQSYNAIIVGYAQNGQGVEALQLFRLLQKSG--------LGFNEITLSGAFSACAVIAGYLEGLQVHGLAIKSNLWSNI 415 (888)
Q Consensus 344 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~ 415 (888)
+...+|.++..+.+..-...-+..+-.|..+. -..|......-+..|...||+..--.++
T Consensus 7 ~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly------------ 74 (233)
T PF14669_consen 7 DPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLY------------ 74 (233)
T ss_pred CHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHH------------
Q ss_pred hhhHHHHHhhhccCChHH-----HHHHHhhcCCCCeeeHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 002718 416 CVANSILDMYGKCQDVIE-----ACHVFDEMERRDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKA 490 (888)
Q Consensus 416 ~~~~~li~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 490 (888)
-.+-.++-+.++++. |..+.++.+++-.+.|-....+-++.-..+++-+.|---+. .+++-.
T Consensus 75 ---~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiG----------iS~m~~ 141 (233)
T PF14669_consen 75 ---INVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIG----------ISLMYS 141 (233)
T ss_pred ---hhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHH----------HHHHHH
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCch--------------hHHHHHHHHHHhcCCHHHHHHHHHh
Q 002718 491 CAGQQALNYGMQIHSRIIKSGMGSNL--------------FVGSALIDMYCKCGMVEEAKKILKR 541 (888)
Q Consensus 491 ~~~~~~~~~a~~~~~~~~~~g~~~~~--------------~~~~~li~~~~~~g~~~~A~~~~~~ 541 (888)
|.+..++.+++++++.+-+..+.-+. .+.|.-...+.++|.+|.|..++++
T Consensus 142 Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 142 YHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 470
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.15 E-value=1.8e+02 Score=18.28 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHH
Q 002718 766 NVEVAEEAASSLLQLDPQDSSTYILLS 792 (888)
Q Consensus 766 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 792 (888)
.++.|..++++.+...| ++.+++..+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46788888888888877 455555443
No 471
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.11 E-value=3.8e+02 Score=21.48 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 002718 502 QIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTE 543 (888)
Q Consensus 502 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 543 (888)
++|+.....|+..|+.+|..+++.+.-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777788888888888888887776666777777777665
No 472
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.00 E-value=1.6e+02 Score=22.71 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=28.1
Q ss_pred CEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCCCCC
Q 002718 829 DKVHTFLVRDKDHPKCEEIYEKLGLLIGEMKWRGCASD 866 (888)
Q Consensus 829 ~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~ 866 (888)
++...|-.+| +..+++.+.|......+++.||-|=
T Consensus 5 D~T~~f~~~d---~~~~~v~e~L~~VY~sL~ekGYNpi 39 (88)
T COG4472 5 DETMRFDVGD---SDKKDVKETLNDVYNSLEEKGYNPI 39 (88)
T ss_pred cceeeeecCC---ChHHHHHHHHHHHHHHHHHcCCChH
Confidence 4556787777 4567888899999999999999883
No 473
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.88 E-value=1.1e+03 Score=26.94 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHhc-CCC-----CCcchhhHHHHHHHhcCchhHHHHhhhhCCC
Q 002718 82 FVSNCLIQLYIKCSNLKSALKVFDK-MPQ-----RDVVSWNALIFGYAVRGEMGIARTLFEAMPE 140 (888)
Q Consensus 82 ~~~~~li~~~~~~g~~~~A~~~~~~-m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 140 (888)
.+-..|++..-+.- .........+ |.. .++..|+ .+..+.-+|.++.|.+++.....
T Consensus 114 ~v~~~Ll~WvNr~~-~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~ 176 (566)
T PF07575_consen 114 PVPEQLLDWVNRFH-FPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLHSS 176 (566)
T ss_dssp HHHHHHHHHHHTTS---SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TTTT
T ss_pred chHHHHHHHHHHhC-CCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhccc
Confidence 34566776664432 2222222222 221 2356776 78888889999999999966543
No 474
>PRK12356 glutaminase; Reviewed
Probab=23.83 E-value=6.3e+02 Score=26.19 Aligned_cols=155 Identities=11% Similarity=0.045 Sum_probs=68.6
Q ss_pred CCCCCchhhHHHHHHHHhcCChhHHHHHHhcCCCCCcchhhHHHHHHHhcCchhHHHHhhhhCCCCCceehHHHHHHHhh
Q 002718 76 GFKPTIFVSNCLIQLYIKCSNLKSALKVFDKMPQRDVVSWNALIFGYAVRGEMGIARTLFEAMPERDVISWNSLLSGYLL 155 (888)
Q Consensus 76 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 155 (888)
|..|+-..||++++.-...|.... -|.+....+-..||.+-....+++.-+++++++-..+...=..+...-..
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P~N------PmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~SE~~ 166 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKPLN------PLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQSEQT 166 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCCCC------ccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHHHHHh
Confidence 788888888888766554443321 11111222222233321112223333444444433322212222332333
Q ss_pred CCChhhHHHHHHHHHhcCCCCCC--chHHHHHHHhcccCCchhHhHHHHHHHHhCCCC-------ChhhHHHHHHhhhcC
Q 002718 156 VGDFSKAIDVFVEMGRLSGMVDN--RSFAVALKACSILEDGDFGVQLHCFAMKMGFDK-------DVVTGSALVDMYAKC 226 (888)
Q Consensus 156 ~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-------~~~~~~~li~~~~~~ 226 (888)
.|+-..|+..| |+..+-+..+ .++..-.+.|+-....+..-.+-..+...|..| +..+-..+......|
T Consensus 167 t~~RNrAlA~~--lks~g~i~~d~~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~s~M~TC 244 (319)
T PRK12356 167 TNFHNRAIAWL--LYSYGRLYCDPMEACDVYTRQCSTLVTARDLATMGATLAAGGVNPLTGKRVVDADNVPYILAEMTME 244 (319)
T ss_pred hhHHHHHHHHH--HHHCCCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHcCCcCCCCCCeecCHHHHHHHHHHHHHc
Confidence 44445555544 3333222223 555555555655554444444444444445444 222233344444556
Q ss_pred CChhhHHHHhcc
Q 002718 227 KKLDDSVSLFNR 238 (888)
Q Consensus 227 g~~~~A~~~~~~ 238 (888)
|.+|.+-++.-+
T Consensus 245 GmYd~SG~fa~~ 256 (319)
T PRK12356 245 GLYERSGDWAYT 256 (319)
T ss_pred CCccchhhHHHH
Confidence 666666655444
No 475
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.62 E-value=7.8e+02 Score=24.95 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 002718 684 ATFISVLRACAHIGLVEKGLHYFNVM 709 (888)
Q Consensus 684 ~t~~~ll~a~~~~g~~~~a~~~~~~m 709 (888)
.++..+..-|++.++.+.|.+...+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34555555566666666665555443
No 476
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.33 E-value=3.3e+02 Score=30.84 Aligned_cols=63 Identities=11% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 002718 754 WRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQNKV 816 (888)
Q Consensus 754 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 816 (888)
.+.+.-.|.....++.|.++++++-+.+|.++-.......+....|.-++|+.+....+..-.
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 334444444555677777777777777777777777777777777777777666665554433
No 477
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.31 E-value=4.1e+02 Score=29.77 Aligned_cols=131 Identities=16% Similarity=0.075 Sum_probs=84.6
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhHhccCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCCC--HH
Q 002718 679 VKPNHATFISVLRACAHI--GLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGR-SGQLNKALKLIQEM-PFEAD--DV 752 (888)
Q Consensus 679 ~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~-~g~~~~A~~~~~~~-~~~p~--~~ 752 (888)
--|+..+...++.-.... ...+-|-.++-.|. + .+-|.=... .+.-+|.| .|+...|.+-+..+ ...|- -+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 346666655554433221 22344555555554 2 333321111 22334444 58888888887766 34442 23
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHH
Q 002718 753 IWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMR 812 (888)
Q Consensus 753 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 812 (888)
..-.|.....+.|..-.|-..+.+.+.+....|-++..++++|....+.+.|++.++..-
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 345566777777888899999999999988889999999999999999999987766443
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.99 E-value=2.9e+02 Score=25.54 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=25.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhhcCC
Q 002718 249 TVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALS 293 (888)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 293 (888)
.++..+...+..-.|.++++.+.+.+..++..|..-.|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 444444444555566666666666665555555555555544444
No 479
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=22.64 E-value=1.4e+03 Score=27.46 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCC--Chh--HHHHHHH--HHhhcCCHHHHHHHHHh
Q 002718 688 SVLRACAHIGLVEKGLHYFNVMLSDYSLHP--QLE--HYSCMVD--ILGRSGQLNKALKLIQE 744 (888)
Q Consensus 688 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~--~~~~l~~--~l~~~g~~~~A~~~~~~ 744 (888)
.|+......|+.++|...+.++..- ...+ ... .-.+.+. .-...|+.++|.....+
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 5556666777777777777776532 2222 111 1112222 22356777776666655
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=22.43 E-value=5.6e+02 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=13.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhH
Q 002718 690 LRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 690 l~a~~~~g~~~~a~~~~~~m~ 710 (888)
+-.|.+.|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 345666677777766666665
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.37 E-value=3.3e+02 Score=24.44 Aligned_cols=55 Identities=9% Similarity=-0.095 Sum_probs=40.2
Q ss_pred CCCCCchHHHHHHHhcccCCchhHhHHHHHHHHhCCCCChhhHHHHHHhhhcCCC
Q 002718 174 GMVDNRSFAVALKACSILEDGDFGVQLHCFAMKMGFDKDVVTGSALVDMYAKCKK 228 (888)
Q Consensus 174 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 228 (888)
|.+.+..-..+++.+...++.-.|.++|..+.+.++..+..|-..-++.+...|-
T Consensus 16 glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 16 GLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 7777777777777777777778888888888888877766654445566666654
No 482
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=22.11 E-value=4.7e+02 Score=22.20 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHH
Q 002718 770 AEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKL 804 (888)
Q Consensus 770 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 804 (888)
+.+.+.+...+.|..+..++.|++-+....-|+++
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~ 97 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKA 97 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHH
Confidence 34445555566665555555555544444444444
No 483
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=21.99 E-value=1.8e+02 Score=30.87 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=12.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHh
Q 002718 724 CMVDILGRSGQLNKALKLIQE 744 (888)
Q Consensus 724 ~l~~~l~~~g~~~~A~~~~~~ 744 (888)
-|+-.|.+.++.+-|+.-..+
T Consensus 233 klv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhh
Confidence 345566666666666654443
No 484
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.72 E-value=1.3e+03 Score=26.94 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 002718 735 LNKALKLIQEMPFEADDVIW-RTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 735 ~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 813 (888)
..+|..+++.|-..|...+- .+++ ..|..+.+.--++.|+.....-.+..+- ..+.+++..-+-....
T Consensus 622 ~~eAi~lLepl~~D~~~fVRQgAlI---------a~amIm~Q~t~~~~pkv~~frk~l~kvI--~dKhEd~~aK~GAilA 690 (929)
T KOG2062|consen 622 LKEAINLLEPLTSDPVDFVRQGALI---------ALAMIMIQQTEQLCPKVNGFRKQLEKVI--NDKHEDGMAKFGAILA 690 (929)
T ss_pred cHHHHHHHhhhhcChHHHHHHHHHH---------HHHHHHHhcccccCchHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 56888888888655544332 2222 2444455555555665444444443332 2344555544555555
Q ss_pred CCCccCCC
Q 002718 814 NKVRKEPG 821 (888)
Q Consensus 814 ~~~~~~~~ 821 (888)
+|+-...|
T Consensus 691 qGildaGG 698 (929)
T KOG2062|consen 691 QGILDAGG 698 (929)
T ss_pred hhhhhcCC
Confidence 55544333
No 485
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=21.70 E-value=8.3e+02 Score=24.54 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCC-----ChhhHHHHHHHhhcCCChhHHHHHHHHHHH
Q 002718 249 TVIAGCVQNYKFIEALKLFKIMQKIG-VGI-----SQSTYASILRSCAALSNLKLGTQLHAHALK 307 (888)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 307 (888)
.|..-|.+.|+.+.|-.++--+...+ ... +.....-++......++++.+.++.+.+..
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKA 248 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34555556666666666555554332 111 122333445555555666666655555443
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.35 E-value=3e+02 Score=31.19 Aligned_cols=89 Identities=17% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHhhhcCCChhhHHHHhcccCC------CChhHHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCCChhhHHHH
Q 002718 218 ALVDMYAKCKKLDDSVSLFNRMSE------RNWVSWNTVIAGCVQNYKFI------EALKLFKIMQKIGVGISQSTYASI 285 (888)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~t~~~l 285 (888)
+|..+|..+|++-.+.+++++... .=...||..|+.+.++|.++ .|.+++++..-.| |..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~---d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNG---DSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCC---cchHHHHH
Q ss_pred HHHhhcCCChhHHHHHHHHHHHhC
Q 002718 286 LRSCAALSNLKLGTQLHAHALKTD 309 (888)
Q Consensus 286 l~~~~~~~~~~~a~~~~~~~~~~g 309 (888)
+++...--+-..+.-++...+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s 133 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRS 133 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhh
No 487
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.91 E-value=3.8e+02 Score=24.02 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 002718 249 TVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSC 289 (888)
Q Consensus 249 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 289 (888)
.++..+.+.+..-.|.++++++.+.+...+..|....|+.+
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 34444444544455555555555555444444444443333
No 488
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=20.80 E-value=2.7e+02 Score=31.99 Aligned_cols=145 Identities=17% Similarity=0.199 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHhcCCHHHHHHHHHHhHhc-cCCCCC
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKPNHAT----------FISVLRACAHIGLVEKGLHYFNVMLSD-YSLHPQ 718 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~ 718 (888)
+...|+-.|....+++.-+++.+.+.. -||..- |.-.++-=-+-|+-++|+...-.+.++ ..+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 445556667777777777777777776 343221 111222223446667776666555433 234555
Q ss_pred hhH-----HHHH--HHHHhhcCCHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcch
Q 002718 719 LEH-----YSCM--VDILGRSGQLNKALKLIQEM-PFEADDV---IWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 719 ~~~-----~~~l--~~~l~~~g~~~~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 787 (888)
... |.-| ...|..++..+.|.+++++. .++|... -+.+|+.+--.| ++..+++- ..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~--Fens~Elq-----------~I 346 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEH--FENSLELQ-----------QI 346 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhh--ccchHHHH-----------HH
Confidence 432 1111 11223344556666666665 4555433 233333332221 11111111 11
Q ss_pred HHHHHHHHHHcCCchHHHHHHHH
Q 002718 788 YILLSNIYADAGMWDKLSYTRRL 810 (888)
Q Consensus 788 ~~~l~~~~~~~g~~~~a~~~~~~ 810 (888)
-..|.+++.+.|..++-.++|..
T Consensus 347 gmkLn~LlgrKG~leklq~YWdV 369 (1226)
T KOG4279|consen 347 GMKLNSLLGRKGALEKLQEYWDV 369 (1226)
T ss_pred HHHHHHHhhccchHHHHHHHHhH
Confidence 24456667777776666555543
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.49 E-value=2.7e+02 Score=25.76 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 002718 661 HGLGEEALKVFENMELENVKPNHATFISVLRACAHIGLV 699 (888)
Q Consensus 661 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 699 (888)
.++.-.|.++++++.+.+..++..|...-|..+...|.+
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344445556666666555444555554455555555443
No 490
>PF15469 Sec5: Exocyst complex component Sec5
Probab=20.24 E-value=7.1e+02 Score=23.23 Aligned_cols=84 Identities=21% Similarity=0.320 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Q 002718 688 SVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEMPFEADDVIWRTLLSICKIHGN 766 (888)
Q Consensus 688 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 766 (888)
.-+.-|.+.|+++.++..|.+....++-.. ....+.. -+.++.+.++... ..+|..|.... ..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 345567777888888888877764332211 1111111 1233333333221 12233332221 56
Q ss_pred HHHHHHHHHHHHhcCCCCcch
Q 002718 767 VEVAEEAASSLLQLDPQDSST 787 (888)
Q Consensus 767 ~~~a~~~~~~~~~~~p~~~~~ 787 (888)
.+....+.+.+++++|++..+
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi 175 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPI 175 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHH
Confidence 777888888888888754333
Done!