Query 002718
Match_columns 888
No_of_seqs 723 out of 5038
Neff 10.9
Searched_HMMs 29240
Date Tue Mar 26 17:48:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002718.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1436-1440//hhsearch_pdb/002718hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 320.2 42.6 378 347-797 202-596 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 316.5 35.2 497 224-814 64-579 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 207.5 22.2 17 661-677 303-319 (501)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 202.3 38.5 335 423-800 41-388 (388)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 198.2 38.9 350 453-813 6-367 (388)
6 2gw1_A Mitochondrial precursor 1.0 1 1 185.1 30.4 142 648-791 338-489 (514)
7 2gw1_A Mitochondrial precursor 1.0 1 1 184.9 29.1 186 624-813 277-477 (514)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 180.1 31.8 320 447-794 27-372 (450)
9 3fp2_A TPR repeat-containing p 1.0 1 1 172.4 33.4 232 551-787 247-498 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 171.2 31.0 59 650-710 297-356 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=320.16 Aligned_cols=378 Identities=8% Similarity=-0.029 Sum_probs=247.9
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH-HHHHHHHHHHHHCHH--HHHHH-HHHHHHHCCCCCHHHHHHHH
Q ss_conf 589999999938991489999999887699988000-866888740111025--67999-99999825887413367898
Q 002718 347 SYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEIT-LSGAFSACAVIAGYL--EGLQV-HGLAIKSNLWSNICVANSIL 422 (888)
Q Consensus 347 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~--~a~~~-~~~~~~~~~~~~~~~~~~li 422 (888)
+|+.++.+|.+.|++++|+..|++|.+.+ |+..+ +..+.......+... ....+ +..+...+......+++.++
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99998899998399899999999999729--3256999999985034615678999865774234430889999999999
Q ss_pred HHHHCCCCHHHHHHHHHHCCC--CCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 755126994789999830588--990109999999994799038999999978839899900599999998321771589
Q 002718 423 DMYGKCQDVIEACHVFDEMER--RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYG 500 (888)
Q Consensus 423 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 500 (888)
..|.+.|++++|.++|+.+.. ++..+|+.++..+.+.|++++|..+|+++...+ +.+..++..++.++...|+.+.|
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99807313999999998764388309999999999998468999999999999729-55379999999999982777799
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999929998436999999999924997999999983278---994108999999971899179999999978799
Q 002718 501 MQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE---RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMG 577 (888)
Q Consensus 501 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 577 (888)
..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|.++|+++...+
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 359 YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999998518-35479999999999983569999999999987297778999999999997577799999999999868
Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 88789989999998437342899999999999909999840134631510006997999999970999889999999999
Q 002718 578 VKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSPKRDFVTWNAMICG 657 (888)
Q Consensus 578 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 657 (888)
+.+..+|..++.+
T Consensus 438 -------------------------------------------------------------------~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 438 -------------------------------------------------------------------QGTHLPYLFLGMQ 450 (597)
T ss_dssp -------------------------------------------------------------------TTCSHHHHHHHHH
T ss_pred -------------------------------------------------------------------CCCHHHHHHHHHH
T ss_conf -------------------------------------------------------------------1343899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CCCCC--HHHHHHHHHHHHH
Q ss_conf 985799899999999988879997-88999999999981098999999999967626---99888--5289999998831
Q 002718 658 YAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDY---SLHPQ--LEHYSCMVDILGR 731 (888)
Q Consensus 658 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~~---~~~p~--~~~~~~l~~~~~~ 731 (888)
|.+.|++++|.++|+++.+. .| +..+|..++..+.+.|++++|..+|+++.... +..|+ ..+|..++..+.+
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99857999999999999984--8887679999999999818999999999999985323454535499999999999998
Q ss_pred CCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 29989999999729-99-99999899999999990998999999999983099993239999999997
Q 002718 732 SGQLNKALKLIQEM-PF-EADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYAD 797 (888)
Q Consensus 732 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 797 (888)
.|++++|.+.++++ .. +.++.+|..++.+|...|+++.|...++++++.+|+++..+..++++|..
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 04799999999999973899738999999999981789999999999972088874899999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=316.52 Aligned_cols=497 Identities=8% Similarity=-0.011 Sum_probs=345.4
Q ss_pred HCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 46899016999850169999027999999998169913899999999981878891239999999624899068999999
Q 002718 224 AKCKKLDDSVSLFNRMSERNWVSWNTVIAGCVQNYKFIEALKLFKIMQKIGVGISQSTYASILRSCAALSNLKLGTQLHA 303 (888)
Q Consensus 224 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 303 (888)
.+.|....+...++.++.++...|+.++..+.+.|++++|+.+|++|.+ ..|+..++..+..++...|+++.|..+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp ------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 5567667887754663378999999999999874583479999999996--08993579999999997476999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99992799724698698997661899368999850099999765899999999389914899999998876999880008
Q 002718 304 HALKTDFEMDVIVGTATLDMYAKCNNMSDAQKVFNSLPNCGLQSYNAIIVGYAQNGQGVEALQLFRLLQKSGLGFNEITL 383 (888)
Q Consensus 304 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 383 (888)
.+... +++..+++.++.+|.+.|++++|.++|+++...+... .++...+.. .
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~-----------~---------- 193 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLMQ-----------D---------- 193 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC-----------C----------
T ss_pred HHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCCCC-----------C----------
T ss_conf 87335--4565089999999998866999999984248863223-----234334321-----------1----------
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCHH
Q ss_conf 66888740111025679999999982588741336789875512699478999983058899010999999999479903
Q 002718 384 SGAFSACAVIAGYLEGLQVHGLAIKSNLWSNICVANSILDMYGKCQDVIEACHVFDEMERRDAVSWNAIIAVQAQNGNEE 463 (888)
Q Consensus 384 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 463 (888)
.+ ...+..+|+.++..|.+.|+++
T Consensus 194 -------------------------~~-------------------------------~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 194 -------------------------GG-------------------------------IKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp -------------------------SS-------------------------------CCHHHHHHHHHHHHHHHTTCHH
T ss_pred -------------------------CC-------------------------------CCHHHHHHHHHHHHHHHCCCHH
T ss_conf -------------------------23-------------------------------5125899999889999839989
Q ss_pred HHHHHHHHHHHCCCCCCCC-HHHHHHHHHHCCCCHHHH--HHH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8999999978839899900-599999998321771589--999-999999299984369999999999249979999999
Q 002718 464 ETLFYFISMLHAIMEPDEF-TYGSVLKACAGQQALNYG--MQI-HSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKIL 539 (888)
Q Consensus 464 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 539 (888)
+|...|++|.+.+ |+.. .+..+...+...+..+.. ..+ +..+...+......+++.++..|.+.|++++|..+|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999729--32569999999850346156789998657742344308899999999999980731399999999
Q ss_pred HHCCC--CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 83278--9941089999999718991799999999787998878998999999843734289999999999990999984
Q 002718 540 KRTEE--RDVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDV 617 (888)
Q Consensus 540 ~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 617 (888)
+.+.+ ++..+|+.++..|.+.|++++|..+|+++...+ +.+..++..++..+...|+.++|..++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCH
T ss_conf 8764388309999999999998468999999999999729-5537999999999998277779999999998518-3547
Q ss_pred CHHHHHCCCHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q ss_conf 013463151000699799999997099---9889999999999985799899999999988879997-889999999999
Q 002718 618 YISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRAC 693 (888)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~ 693 (888)
..+..++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+ ..| +..++..++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
T ss_conf 99999999999835699999999999872977789999999999975777999999999998--6813438999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHH
Q ss_conf 8109899999999996762699888528999999883129989999999729-------99999--99899999999990
Q 002718 694 AHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-------PFEAD--DVIWRTLLSICKIH 764 (888)
Q Consensus 694 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 764 (888)
.+.|++++|..+|+++.... +.+...|..++..+.+.|++++|.++++++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98579999999999999848--8876799999999998189999999999999853234545354999999999999980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 99899999999998309999323999999999759911799999999859
Q 002718 765 GNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQN 814 (888)
Q Consensus 765 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 814 (888)
|+++.|...++++++.+|+++..+..++++|...|++++|...++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_conf 47999999999999738997389999999999817899999999999720
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=207.46 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=7.7
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 79989999999998887
Q 002718 661 HGLGEEALKVFENMELE 677 (888)
Q Consensus 661 ~g~~~~A~~~~~~m~~~ 677 (888)
.+...+.++.|+++.+.
T Consensus 303 ~~~~~~~~~~F~~~l~~ 319 (501)
T 4g26_A 303 EREVKANFNQFQEWLER 319 (501)
T ss_dssp HHSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 36348999999999984
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=202.32 Aligned_cols=335 Identities=15% Similarity=0.169 Sum_probs=200.7
Q ss_pred HHHHCCCCHHHHHHHHHHCCC---CCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHCCCCHH
Q ss_conf 755126994789999830588---9901099999999947990389999999788398999-005999999983217715
Q 002718 423 DMYGKCQDVIEACHVFDEMER---RDAVSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPD-EFTYGSVLKACAGQQALN 498 (888)
Q Consensus 423 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 498 (888)
..+...|+.+.|...++.... .+...|..+...+.+.|++++|+..|+++... .|+ ..++..+..++...|+++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHH
T ss_conf 99998689999999999997619786699999999998779999999999999874--9653999999999999858999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8999999999929998436999999999924997999999983278--9-941089999999718991799999999787
Q 002718 499 YGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGMVEEAKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFSYMLK 575 (888)
Q Consensus 499 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 575 (888)
.|...+..+.+.. +.+...+..+...+...|++++|...|+++.. | +..+|..+...+...|++++|...|+++..
T Consensus 119 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 119 GAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999759-896899999999999846899999999999872989789999999999985999999999999985
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCHHHHHHHHHHCC---CCCHHHHH
Q ss_conf 998878998999999843734289999999999990999984013463151000699799999997099---98899999
Q 002718 576 MGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWN 652 (888)
Q Consensus 576 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 652 (888)
..+ .+...+..+...+...|++++|...+++.. +.+..+|.
T Consensus 198 -----------------------------------~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 198 -----------------------------------LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp -----------------------------------HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------------CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf -----------------------------------598-86799999999999857899999999999852968789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999985799899999999988879997-88999999999981098999999999967626998885289999998831
Q 002718 653 AMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQLEHYSCMVDILGR 731 (888)
Q Consensus 653 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 731 (888)
.+...+...|++++|+..|+++.+ ..| +..++..++.++.+.|++++|+..++++... .+.+...+..++..+.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH
T ss_conf 999999986889999999999986--49998899999999999869979999999999864--94449999999999998
Q ss_pred CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29989999999729-9999-999899999999990998999999999983099993239999999997599
Q 002718 732 SGQLNKALKLIQEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGM 800 (888)
Q Consensus 732 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 800 (888)
.|++++|.+.++++ ...| +...+..++.++...|+++.|...++++++..|+++..+..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 48999999999999860987399997799999986888999999999986199978999859999987459
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=198.19 Aligned_cols=350 Identities=14% Similarity=0.104 Sum_probs=287.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999479903899999997883989990-05999999983217715899999999992999843699999999992499
Q 002718 453 IAVQAQNGNEEETLFYFISMLHAIMEPDE-FTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMYCKCGM 531 (888)
Q Consensus 453 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 531 (888)
...+.+.|++++|...+..+... .|+. ..+..+...+...++++.+...+....+.. +.+...+..+...+.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCC
T ss_conf 99998779999999999999984--97889999999999998689999999999997619-7866999999999987799
Q ss_pred HHHHHHHHHHCCC--C-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 7999999983278--9-941089999999718991799999999787998878-99899999984373428999999999
Q 002718 532 VEEAKKILKRTEE--R-DVVSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPD-DFTYATLLDTCGNLATVGLGMQLHAQ 607 (888)
Q Consensus 532 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~ 607 (888)
+++|...|+++.. | +..+|..+...+...|++++|...|+++... .|+ ...+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999998749653999999999999858999999999999975--989689999999999984689999999999
Q ss_pred HHHHCCCCCCCHHHHHCCCHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CH
Q ss_conf 9990999984013463151000699799999997099---9889999999999985799899999999988879997-88
Q 002718 608 IIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NH 683 (888)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 683 (888)
+....+ .+...+..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++... ..| +.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
T ss_conf 987298-97899999999999859999999999999855988679999999999985789999999999985--296878
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHH
Q ss_conf 9999999999810989999999999676269988-8528999999883129989999999729-9-99999989999999
Q 002718 684 ATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHP-QLEHYSCMVDILGRSGQLNKALKLIQEM-P-FEADDVIWRTLLSI 760 (888)
Q Consensus 684 ~~~~~ll~a~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 760 (888)
.++..++.++...|++++|+..++++... .| +...+..++..+.+.|++++|.+.++++ . .+.+...|..++..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999868899999999999864---999889999999999986997999999999986494449999999999
Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99909989999999999830999932399999999975991179999999985
Q 002718 761 CKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 761 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 813 (888)
+...|+++.|...++++++..|++...+..++.+|...|++++|...++.+.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99848999999999999860987399997799999986888999999999986
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=185.13 Aligned_cols=142 Identities=8% Similarity=0.043 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC----HHHH
Q ss_conf 9999999999985799899999999988879997-8899999999998109899999999996762699888----5289
Q 002718 648 FVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVMLSDYSLHPQ----LEHY 722 (888)
Q Consensus 648 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~ 722 (888)
...|..+...+...|++++|...++++.+ ..| +...+..++.++...|++++|...++++.......+. ...+
T Consensus 338 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 338 IFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPL 415 (514)
T ss_dssp SHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 89999999999986899999999999998--7546778999999999878899999999999997612332178999999
Q ss_pred HHHHHHHHH---CCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 999998831---29989999999729-99-99999899999999990998999999999983099993239999
Q 002718 723 SCMVDILGR---SGQLNKALKLIQEM-PF-EADDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILL 791 (888)
Q Consensus 723 ~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 791 (888)
..++..+.. .|++++|...++++ .. +.++..+..+...+...|+++.|...++++++..|+++..+..+
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999986633258889999999999875855589999999999982579999999999987661468899999
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=184.93 Aligned_cols=186 Identities=13% Similarity=0.028 Sum_probs=138.7
Q ss_pred CCCHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCH
Q ss_conf 151000699799999997099---9889999999999985799899999999988879997-889999999999810989
Q 002718 624 VDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLV 699 (888)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~ 699 (888)
...|...|++++|...++.+. +.+...|..+...+...|++++|...++++.. ..| +...+..+...+...|++
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999888899999999998613867789999999999980779999999999987--3850289999999999986899
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-C---CCCC----HHHHHHHHHHHHH---HCCHH
Q ss_conf 9999999996762699888528999999883129989999999729-9---9999----9989999999999---09989
Q 002718 700 EKGLHYFNVMLSDYSLHPQLEHYSCMVDILGRSGQLNKALKLIQEM-P---FEAD----DVIWRTLLSICKI---HGNVE 768 (888)
Q Consensus 700 ~~A~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~ 768 (888)
++|...++++..... .+...+..++..+.+.|++++|...++++ . ..++ ...|..++..+.. .|+++
T Consensus 355 ~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 355 DDCETLFSEAKRKFP--EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHHHHHHHHHHST--TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 999999999998754--677899999999987889999999999999761233217899999999999986633258889
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999999830999932399999999975991179999999985
Q 002718 769 VAEEAASSLLQLDPQDSSTYILLSNIYADAGMWDKLSYTRRLMRQ 813 (888)
Q Consensus 769 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 813 (888)
.|...++++++..|+++..+..++.+|...|++++|...++...+
T Consensus 433 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999999875855589999999999982579999999999987
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=180.10 Aligned_cols=320 Identities=9% Similarity=0.036 Sum_probs=200.8
Q ss_pred EEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 10999999999479903899999997883989990059999999832177158999999999929998436999999999
Q 002718 447 VSWNAIIAVQAQNGNEEETLFYFISMLHAIMEPDEFTYGSVLKACAGQQALNYGMQIHSRIIKSGMGSNLFVGSALIDMY 526 (888)
Q Consensus 447 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 526 (888)
..+..+...+.+.|++++|+..|.++.... +.+..++..+..++...|+++.|...+..+.+.+ +.+...+..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH
T ss_conf 999999999998799999999999999849-7168999999999998799799999999998449-87489999999999
Q ss_pred HHCCCHHHHHHHHHHCCCCCC------CCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 924997999999983278994------10899999997189917999999997879988789989999998437342899
Q 002718 527 CKCGMVEEAKKILKRTEERDV------VSWNAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGL 600 (888)
Q Consensus 527 ~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 600 (888)
...|++++|...|+.+...++ ..+..++..+... .+......+...|+++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHCCCHHH
T ss_conf 9869999999999999724999701688999999999999-----------------------99999999998689999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHCCCHHHCCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999990999984013463151000699799999997099---988999999999998579989999999998887
Q 002718 601 GMQLHAQIIKQEMQSDVYISSTLVDMYSKCGNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELE 677 (888)
Q Consensus 601 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 677 (888)
|...+..+..... .+...+..++.+|.+.|++++|...|+++. +.+..+|..++..+...|++++|+..|+++..
T Consensus 162 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 239 (450)
T 2y4t_A 162 AIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 239 (450)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_conf 9999999998688-97699999999998779999999999999986889879999999999975999999999999987-
Q ss_pred CCCCCH-HHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999788-999999------------99998109899999999996762699888--528999999883129989999999
Q 002718 678 NVKPNH-ATFISV------------LRACAHIGLVEKGLHYFNVMLSDYSLHPQ--LEHYSCMVDILGRSGQLNKALKLI 742 (888)
Q Consensus 678 g~~p~~-~~~~~l------------l~a~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 742 (888)
..|+. ..+..+ +.++.+.|++++|+..|+++....+..|. ...+..++..+.+.|++++|...+
T Consensus 240 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 240 -LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred -HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf -5998089999999999999999999999871799999999999985087336899999999999999878899999999
Q ss_pred HHC-CCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 729-9999-999899999999990998999999999983099993239999999
Q 002718 743 QEM-PFEA-DDVIWRTLLSICKIHGNVEVAEEAASSLLQLDPQDSSTYILLSNI 794 (888)
Q Consensus 743 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 794 (888)
+++ ...| ++..|..++.+|...|+++.|...++++++..|+++..+..++.+
T Consensus 319 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999884845489999999999870379999999999988593529999999999
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=172.44 Aligned_cols=232 Identities=12% Similarity=0.066 Sum_probs=104.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHC
Q ss_conf 99999997189917999999997879988789989999998437342899999999999909999840134631510006
Q 002718 551 NAIISGFSGAKRSEDAHKFFSYMLKMGVKPDDFTYATLLDTCGNLATVGLGMQLHAQIIKQEMQSDVYISSTLVDMYSKC 630 (888)
Q Consensus 551 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 630 (888)
..+...+...|++++|...|++.... .|+...+..+...+...|+++.|...+..+..... .+...+..+...+...
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHC
T ss_conf 99999987545578999999999866--98746999999999980379999999999754599-9879999999999866
Q ss_pred CCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99799999997099---9889999999999985799899999999988879997-8899999999998109899999999
Q 002718 631 GNVQDSRIMFEKSP---KRDFVTWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYF 706 (888)
Q Consensus 631 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~A~~~~ 706 (888)
|++++|...++++. +.+...|..+...+...|++++|...++++.+ ..| +...+..+..++...|++++|...+
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 8999999999999985999779999999999984779999999999987--39998599999999998837889999999
Q ss_pred HHHHHCCCCCCC----HHHHHHHHHHHHHC----------CCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHHCCHHHH
Q ss_conf 996762699888----52899999988312----------9989999999729-99-99999899999999990998999
Q 002718 707 NVMLSDYSLHPQ----LEHYSCMVDILGRS----------GQLNKALKLIQEM-PF-EADDVIWRTLLSICKIHGNVEVA 770 (888)
Q Consensus 707 ~~m~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 770 (888)
+++.......+. ...+..++..+.+. |++++|...++++ .. +.+...|..++.++...|+++.|
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99987097624468889999988999999764010022475799999999999974999789999999999985149999
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998309999323
Q 002718 771 EEAASSLLQLDPQDSST 787 (888)
Q Consensus 771 ~~~~~~~~~~~p~~~~~ 787 (888)
...++++++..|.+...
T Consensus 482 ~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 482 IELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHCCCCHHH
T ss_conf 99999999868993888
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=171.15 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999985799899999999988879997-88999999999981098999999999967
Q 002718 650 TWNAMICGYAHHGLGEEALKVFENMELENVKP-NHATFISVLRACAHIGLVEKGLHYFNVML 710 (888)
Q Consensus 650 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~a~~~~g~~~~A~~~~~~m~ 710 (888)
.|..++..+...|++++|+..++++.. ..| +...+..++.+|...|++++|...++++.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999987889999999999988--484548999999999987037999999999998
Done!