Query 002719
Match_columns 888
No_of_seqs 636 out of 3533
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 18:18:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002719.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1436-1440//hhsearch_pdb/002719hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 408.3 21.7 258 527-800 40-319 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 408.2 17.9 259 527-801 12-290 (299)
3 3omv_A RAF proto-oncogene seri 1.0 1 1 405.3 23.0 263 525-801 33-301 (307)
4 4gt4_A Tyrosine-protein kinase 1.0 1 1 403.8 22.8 255 529-799 27-305 (308)
5 4b9d_A Serine/threonine-protei 1.0 1 1 398.6 18.3 246 528-792 24-275 (350)
6 4fie_A Serine/threonine-protei 1.0 1 1 397.4 24.0 244 528-791 151-398 (423)
7 4ase_A Vascular endothelial gr 1.0 1 1 397.1 17.0 265 518-800 54-347 (353)
8 4fih_A Serine/threonine-protei 1.0 1 1 396.1 21.7 244 528-791 74-321 (346)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 391.3 19.8 255 526-799 56-315 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 387.3 17.4 244 528-791 32-282 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=408.33 Aligned_cols=258 Identities=24% Similarity=0.421 Sum_probs=213.4
Q ss_pred CCCCCCCCEEEECCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCEE
Q ss_conf 289775411410086689999987-------9089999935899999037999999998259997001305347--7128
Q 002719 527 THNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWT 597 (888)
Q Consensus 527 ~~~y~~~~~LG~G~fG~Vy~g~~~-------~~~VAIK~l~~~~~~~~~~~~~Ei~iL~~L~HpnIv~l~g~~~--~~~~ 597 (888)
..+|.+.++||+|+||.||+|.+. +..||||++........+.|.+|+.+|++|+|||||+++|+|. ...+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9997348999444310269------------9999998889999999999999985239996020331579089847992
Q 002719 598 LVYEYLPNGSLEDRLSCKD------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFV 665 (888)
Q Consensus 598 lV~Ey~~~gsL~~~L~~~~------------~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~ 665 (888)
+|||||++|+|.+++.... ...+++|..++.|+.|++.||.|||+ ++||||||||+||||+.++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCC
T ss_conf 999827999399999860754100122112457889999999999999999999840---88422666676489889996
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHH
Q ss_conf 00004432102454444678864111379999866678111114999960468889999999990-99999985589999
Q 002719 666 SKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYA 744 (888)
Q Consensus 666 vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~ellt-G~~Pf~~~~~~~~~ 744 (888)
+||+|||+|+.+........ .+...||+.|+|||++.+..|+.++|||||||+||||+| |++||......+..
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~------~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~ 270 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRV------GGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAI 270 (329)
T ss_dssp EEECCCC----------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHH
T ss_pred EEECCCCCCEECCCCCCCEE------CCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 89766603336567875300------476455656658265447999966300105789999982899999998999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 84100001258778999935699999999998500979999969999997300000
Q 002719 745 LDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA 800 (888)
Q Consensus 745 ~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 800 (888)
..... ......|..+++.+.+|+.+||+.+|.+||++ .+|.+.|+.+..
T Consensus 271 ~~i~~------g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~-~ei~~~L~~l~~ 319 (329)
T 4aoj_A 271 DCITQ------GRELERPRACPPEVYAIMRGCWQREPQQRHSI-KDVHARLQALAQ 319 (329)
T ss_dssp HHHHH------TCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCH-HHHHHHHHHHHH
T ss_pred HHHHC------CCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCH-HHHHHHHHHHHH
T ss_conf 99980------89899864463999999999747596579299-999999998745
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=408.23 Aligned_cols=259 Identities=23% Similarity=0.428 Sum_probs=213.6
Q ss_pred CCCCCCCCEEEECCCEEEEEEEEC-------CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCEE
Q ss_conf 289775411410086689999987-------9089999935899999037999999998259997001305347--7128
Q 002719 527 THNFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWT 597 (888)
Q Consensus 527 ~~~y~~~~~LG~G~fG~Vy~g~~~-------~~~VAIK~l~~~~~~~~~~~~~Ei~iL~~L~HpnIv~l~g~~~--~~~~ 597 (888)
.++|.+.++||+|+||.||+|.+. +..||||++........+.|.+|+.+|++|+|||||+++|+|. +..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 88929824982078829999998776667788799999967778589999999999998589988862879995699899
Q ss_pred EEEEECCCCCHHHHHHCC----------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEE
Q ss_conf 999734899944431026----------9999999888999999999999998523999602033157908984799200
Q 002719 598 LVYEYLPNGSLEDRLSCK----------DNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSK 667 (888)
Q Consensus 598 lV~Ey~~~gsL~~~L~~~----------~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~vK 667 (888)
+|||||++|+|.++|... .....++|..++.|+.|++.||.|||+ ++|+||||||+||||+.++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEE
T ss_conf 9998589996899998608642111235777889999999999999999999975---9904676577638987998689
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHH
Q ss_conf 004432102454444678864111379999866678111114999960468889999999990-9999998558999984
Q 002719 668 LSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYALD 746 (888)
Q Consensus 668 L~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~ellt-G~~Pf~~~~~~~~~~~ 746 (888)
|+|||+|+.......... .....||+.|+|||++.++.|+.++|||||||+||||+| |++||......+....
T Consensus 169 i~DFGla~~~~~~~~~~~------~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~ 242 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRV------GGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIEC 242 (299)
T ss_dssp ECCCSCHHHHTGGGCEEE------TTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHH
T ss_pred ECCCCCCEECCCCCCEEE------CCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
T ss_conf 887300100678874166------47513470103889870799970366778899999998089999999899999999
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 1000012587789999356999999999985009799999699999973000003
Q 002719 747 TGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 801 (888)
Q Consensus 747 ~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~~~L~~l~~~ 801 (888)
... ......|...+..+.+|+.+||+.+|.+||++ +++...|+.+...
T Consensus 243 i~~------~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~-~~i~~~L~~~~~~ 290 (299)
T 4asz_A 243 ITQ------GRVLQRPRTCPQEVYELMLGCWQREPHMRKNI-KGIHTLLQNLAKA 290 (299)
T ss_dssp HHH------TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHHH
T ss_pred HHC------CCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCH-HHHHHHHHHHHHC
T ss_conf 980------89889974143999999999768796689299-9999999877763
No 3
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.33 Aligned_cols=263 Identities=25% Similarity=0.409 Sum_probs=210.9
Q ss_pred HHCCCCCCCCEEEECCCEEEEEEEECCEEEEEEEECCCCCC--CHHHHHHHHHHHHHCCCCCEEEEECCCC-CCEEEEEE
Q ss_conf 10289775411410086689999987908999993589999--9037999999998259997001305347-71289997
Q 002719 525 GATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGACP-EVWTLVYE 601 (888)
Q Consensus 525 ~~~~~y~~~~~LG~G~fG~Vy~g~~~~~~VAIK~l~~~~~~--~~~~~~~Ei~iL~~L~HpnIv~l~g~~~-~~~~lV~E 601 (888)
...+++.+.++||+|+||+||+|.+.+ .||||+++..... ..+.|.+|+.+|++++|||||+++|+|. +..++|||
T Consensus 33 i~~~~l~l~~~iG~G~fG~Vy~~~~~~-~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmE 111 (307)
T 3omv_A 33 IEASEVMLSTRIGSGSFGTVYKGKWHG-DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQ 111 (307)
T ss_dssp CCTTSCCEEEECCCCSSSEEEEEESSS-EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEE
T ss_pred ECHHHEEEEEEEEECCCCEEEEEEECC-CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEE
T ss_conf 747994984498208886899999899-6899999726899999999999999998589988746999997895899997
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 34899944431026999999988899999999999999852399960203315790898479920000443210245444
Q 002719 602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE 681 (888)
Q Consensus 602 y~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~vKL~DFGla~~~~~~~ 681 (888)
||+||+|.++|... ..++++..+..|+.|++.||.|||+ ++||||||||+||||+.++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~~--~~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ--ETKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHTS--CCCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred CCCCCCHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC
T ss_conf 48998788987524--8999999999999999999999977---995278557899788899908994415754246677
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCC---CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 4678864111379999866678111114---9999604688899999999909999998558999984100001258778
Q 002719 682 ISSNNTTLCCRTDPKGTFAYMDPEFLAS---GELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLA 758 (888)
Q Consensus 682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~---~~~~~~sDVwSlGviL~elltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~ 758 (888)
.... .+...||+.|||||++.+ +.|+.++|||||||+||||+||++||............. ......|..
T Consensus 187 ~~~~------~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~-~~~~~~p~~ 259 (307)
T 3omv_A 187 GSQQ------VEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMV-GRGYASPDL 259 (307)
T ss_dssp -------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHH-HTTCCCCCS
T ss_pred CCEE------ECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH-HCCCCCCCC
T ss_conf 6403------156446877249878614689987868775728999999997889989999699999999-658888872
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999356999999999985009799999699999973000003
Q 002719 759 GDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRAS 801 (888)
Q Consensus 759 ~~~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~~~L~~l~~~ 801 (888)
...+..++..+.+|+.+||+.+|.+||++ .+++..|+.++..
T Consensus 260 ~~~~~~~~~~l~~li~~cl~~dP~~RPs~-~ei~~~Le~l~~~ 301 (307)
T 3omv_A 260 SKLYKNCPKAMKRLVADCVKKVKEERPLF-PQILSSIELLQHS 301 (307)
T ss_dssp TTSCTTSCHHHHHHHHHHTCSSSTTSCCH-HHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHCCCH-HHHHHHHHHHHCC
T ss_conf 00354456999999999757797689098-9999999997450
No 4
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=403.82 Aligned_cols=255 Identities=23% Similarity=0.372 Sum_probs=209.2
Q ss_pred CCCCCCEEEECCCEEEEEEEEC-------CEEEEEEEECCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCEEE
Q ss_conf 9775411410086689999987-------90899999358999-99037999999998259997001305347--71289
Q 002719 529 NFDPSLKIGEGGYGSIYKGLLR-------HMQVAIKMLHPHSL-QGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTL 598 (888)
Q Consensus 529 ~y~~~~~LG~G~fG~Vy~g~~~-------~~~VAIK~l~~~~~-~~~~~~~~Ei~iL~~L~HpnIv~l~g~~~--~~~~l 598 (888)
++.+.++||+|+||.||+|.+. +..||||++..... ...+.|.+|+.+|++++|||||+++|+|. ...++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9973489994443102699-------------999998889999999999999985239996020331579089847992
Q 002719 599 VYEYLPNGSLEDRLSCKDN-------------SPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFV 665 (888)
Q Consensus 599 V~Ey~~~gsL~~~L~~~~~-------------~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~ 665 (888)
|||||++|+|.++|..... ...++|..++.|+.||+.||.|||+ ++||||||||+||||+.++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCCC
T ss_conf 998189994999998627654333322111124689999999999999999999986---89977873623068879997
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHH
Q ss_conf 00004432102454444678864111379999866678111114999960468889999999990-99999985589999
Q 002719 666 SKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-GRPALGITKEVQYA 744 (888)
Q Consensus 666 vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~ellt-G~~Pf~~~~~~~~~ 744 (888)
+||+|||+|+.+........ .+...||+.|+|||++.++.|+.++|||||||+||||+| |++||......+..
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~------~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~ 257 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKL------LGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVV 257 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCS------SSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHH
T ss_pred EEECCCCCCEECCCCCCEEE------ECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 89887602023367774047------345125776569899827999963000157999999996899999998999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 8410000125877899993569999999999850097999996999999730000
Q 002719 745 LDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR 799 (888)
Q Consensus 745 ~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~~~L~~l~ 799 (888)
.... .......|..++..+.+|+.+||+.+|.+||++ .+|.+.|+.+.
T Consensus 258 ~~i~------~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~-~ei~~~L~a~~ 305 (308)
T 4gt4_A 258 EMIR------NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRF-KDIHSRLRAWG 305 (308)
T ss_dssp HHHH------TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHTSC
T ss_pred HHHH------CCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCH-HHHHHHHHHCC
T ss_conf 9998------199899962036999999999758796579299-99999998531
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=398.55 Aligned_cols=246 Identities=23% Similarity=0.361 Sum_probs=204.6
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCC--CHHHHHHHHHHHHHCCCCCEEEEECCCC--CCEEEEEE
Q ss_conf 89775411410086689999987--908999993589999--9037999999998259997001305347--71289997
Q 002719 528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQ--GPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVYE 601 (888)
Q Consensus 528 ~~y~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~--~~~~~~~Ei~iL~~L~HpnIv~l~g~~~--~~~~lV~E 601 (888)
++|.+.++||+|+||.||+|... +..||||++...... ....+.+|+.+|+.|+|||||++++++. +..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCC
Q ss_conf 34899944431026999999988899999999999999852399960203315790898479920000443210245444
Q 002719 602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNE 681 (888)
Q Consensus 602 y~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~vKL~DFGla~~~~~~~ 681 (888)
||+||+|.+++... ....+++..++.|+.||+.||.|||+ +||+||||||+||||+.++.+||+|||+|+.+....
T Consensus 104 y~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~ 179 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV 179 (350)
T ss_dssp CCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH
T ss_pred CCCCCCHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCC
T ss_conf 88998399999973-89999789999999999999999998---991513597899798789998976465214406885
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 46788641113799998666781111149999604688899999999909999998558999984100001258778999
Q 002719 682 ISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDW 761 (888)
Q Consensus 682 ~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~elltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~~ 761 (888)
.. .+..+||+.|+|||++.+..|+.++|||||||+||+|+||++||...+......... .....+ .
T Consensus 180 ~~--------~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~--~~~~~~----~ 245 (350)
T 4b9d_A 180 EL--------ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKII--SGSFPP----V 245 (350)
T ss_dssp HH--------HHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHH--HTCCCC----C
T ss_pred CC--------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH--CCCCCC----C
T ss_conf 41--------014578836039999879998959999999999999997879989969999999998--089999----9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 9356999999999985009799999699999
Q 002719 762 PFVQAEQLANLAMRCCEMSRKSRPELGKDVW 792 (888)
Q Consensus 762 p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~ 792 (888)
+...+..+.+|+.+||+.+|.+||++ .+++
T Consensus 246 ~~~~s~~~~~li~~~L~~dP~~R~s~-~e~l 275 (350)
T 4b9d_A 246 SLHYSYDLRSLVSQLFKRNPRDRPSV-NSIL 275 (350)
T ss_dssp CTTSCHHHHHHHHHHTCSSGGGSCCH-HHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHCCCH-HHHH
T ss_conf 75579999999999855896679089-9996
No 6
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=397.38 Aligned_cols=244 Identities=23% Similarity=0.334 Sum_probs=205.0
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCCEEEEEEEC
Q ss_conf 89775411410086689999987--908999993589999903799999999825999700130534--77128999734
Q 002719 528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL 603 (888)
Q Consensus 528 ~~y~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~~~~Ei~iL~~L~HpnIv~l~g~~--~~~~~lV~Ey~ 603 (888)
..|+..++||+|+||.||+|... +..||||++........+.+.+|+.+|+.|+|||||+++++| .+..|+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 89994443102699999998889999999999999985239996020331579089847992000044321024544446
Q 002719 604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS 683 (888)
Q Consensus 604 ~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~vKL~DFGla~~~~~~~~~ 683 (888)
+||+|.+++.. ..+++..+..|+.||+.||.|||+ +|||||||||+||||+.++.+||+|||+|+.+......
T Consensus 231 ~gG~L~~~i~~----~~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 303 (423)
T 4fie_A 231 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 303 (423)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCC
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC
T ss_conf 99828988761----698999999999999999999998---89044657877789858999898037265477788764
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 78864111379999866678111114999960468889999999990999999855899998410000125877899993
Q 002719 684 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDWPF 763 (888)
Q Consensus 684 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~elltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~ 763 (888)
.+..+||+.|||||++.+..|+.++|||||||+||||++|++||............. ....+... .+.
T Consensus 304 --------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~---~~~~~~~~-~~~ 371 (423)
T 4fie_A 304 --------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR---DNLPPRLK-NLH 371 (423)
T ss_dssp --------BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH---HSCCCCCS-CTT
T ss_pred --------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---CCCCCCCC-CCC
T ss_conf --------346664747279999779999968999999999999997879989869999999997---27998876-501
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 5699999999998500979999969999
Q 002719 764 VQAEQLANLAMRCCEMSRKSRPELGKDV 791 (888)
Q Consensus 764 ~~~~~l~~Li~~Cl~~~p~~RPs~~~~v 791 (888)
..+..+.+|+.+||..||.+||++ .++
T Consensus 372 ~~s~~~~dli~~~L~~dP~~R~ta-~el 398 (423)
T 4fie_A 372 KVSPSLKGFLDRLLVRDPAQRATA-AEL 398 (423)
T ss_dssp SSCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCH-HHH
T ss_conf 299999999999867895689099-999
No 7
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=397.13 Aligned_cols=265 Identities=25% Similarity=0.358 Sum_probs=214.1
Q ss_pred CCHHHHHHHCCCCCCCCEEEECCCEEEEEEEECC-------EEEEEEEECCCCCC-CHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 8766662102897754114100866899999879-------08999993589999-90379999999982599-970013
Q 002719 518 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH-------MQVAIKMLHPHSLQ-GPSEFQQEIDILSKIRH-PNLVTL 588 (888)
Q Consensus 518 ~~~~ei~~~~~~y~~~~~LG~G~fG~Vy~g~~~~-------~~VAIK~l~~~~~~-~~~~~~~Ei~iL~~L~H-pnIv~l 588 (888)
|..++++...++|.+.++||+|+||.||+|.+.+ +.||||++...... ....|.+|+.+|.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred ECCCC---CCEEEEEEECCCCCHHHHHHCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 05347---71289997348999444310269-------------999999888999999999999998523999602033
Q 002719 589 VGACP---EVWTLVYEYLPNGSLEDRLSCKD-------------NSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGD 652 (888)
Q Consensus 589 ~g~~~---~~~~lV~Ey~~~gsL~~~L~~~~-------------~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrD 652 (888)
+|+|. ...++|||||++|+|.++|.... ....+++..++.|+.||+.||.|||+ ++|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCC
T ss_conf 8999946977999998389897999997435666543334101103568999999999999999876762---7843574
Q ss_pred CCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH-C
Q ss_conf 157908984799200004432102454444678864111379999866678111114999960468889999999990-9
Q 002719 653 LKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLT-G 731 (888)
Q Consensus 653 LKp~NILld~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~ellt-G 731 (888)
|||+|||++.++.+||+|||+|+.+....... ..+...||+.|||||++.+..|+.++|||||||+||||+| |
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~------~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G 284 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYV------RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLG 284 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSE------EETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCE------EECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCC
T ss_conf 67211305799978979654322245688720------325401466656989994699997553740689999998189
Q ss_pred CCCCCCCHH---HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999998558---999984100001258778999935699999999998500979999969999997300000
Q 002719 732 RPALGITKE---VQYALDTGKLKNLLDPLAGDWPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMRA 800 (888)
Q Consensus 732 ~~Pf~~~~~---~~~~~~~~~~~~~ld~~~~~~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~~~L~~l~~ 800 (888)
++||..... ....+..+ .....|...+..+.+|+.+||+.+|.+||++ .++++.|+.+..
T Consensus 285 ~~Pf~~~~~~~~~~~~i~~g--------~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~-~eil~~L~~llq 347 (353)
T 4ase_A 285 ASPYPGVKIDEEFCRRLKEG--------TRMRAPDYTTPEMYQTMLDCWHGEPSQRPTF-SELVEHLGNLLQ 347 (353)
T ss_dssp CCSSTTCCCSHHHHHHHHHT--------CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHCC--------CCCCCCCCCCHHHHHHHHHHCCCCHHHCCCH-HHHHHHHHHHHH
T ss_conf 99999989899999999738--------9888886578999999999768696679399-999999999998
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=396.15 Aligned_cols=244 Identities=23% Similarity=0.336 Sum_probs=204.8
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC--CCCEEEEEEEC
Q ss_conf 89775411410086689999987--908999993589999903799999999825999700130534--77128999734
Q 002719 528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGAC--PEVWTLVYEYL 603 (888)
Q Consensus 528 ~~y~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~~~~Ei~iL~~L~HpnIv~l~g~~--~~~~~lV~Ey~ 603 (888)
..|+...+||+|+||.||+|... +..||||++........+.+.+|+.+|+.++|||||+++++| .+..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 89994443102699999998889999999999999985239996020331579089847992000044321024544446
Q 002719 604 PNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEIS 683 (888)
Q Consensus 604 ~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~vKL~DFGla~~~~~~~~~ 683 (888)
+||+|.+++.. ..+++..+..|+.||+.||.|||+ ++||||||||+||||+.++.+||+|||+|+.+......
T Consensus 154 ~gg~L~~~l~~----~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 226 (346)
T 4fih_A 154 EGGALTDIVTH----TRMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 226 (346)
T ss_dssp TTEEHHHHHHH----SCCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred CCCCHHHHHHC----CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCC
T ss_conf 99808999871----898999999999999999999998---88355627889978879998899027575366788775
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 78864111379999866678111114999960468889999999990999999855899998410000125877899993
Q 002719 684 SNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGDWPF 763 (888)
Q Consensus 684 ~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~elltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~~p~ 763 (888)
.+..+||+.|+|||++.+..|+.++|||||||+||||++|++||............. ....+.. ..+.
T Consensus 227 --------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~---~~~~~~~-~~~~ 294 (346)
T 4fih_A 227 --------RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIR---DNLPPRL-KNLH 294 (346)
T ss_dssp --------BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH---HSSCCCC-SCGG
T ss_pred --------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH---CCCCCCC-CCCC
T ss_conf --------346562758279999779999968999999999999997879989859999999997---1799988-7502
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 5699999999998500979999969999
Q 002719 764 VQAEQLANLAMRCCEMSRKSRPELGKDV 791 (888)
Q Consensus 764 ~~~~~l~~Li~~Cl~~~p~~RPs~~~~v 791 (888)
..+..+.+|+.+||+.||.+||++ .++
T Consensus 295 ~~s~~~~dli~~~L~~dP~~R~ta-~e~ 321 (346)
T 4fih_A 295 KVSPSLKGFLDRLLVRDPAQRATA-AEL 321 (346)
T ss_dssp GSCHHHHHHHHHHSCSSTTTSCCH-HHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCH-HHH
T ss_conf 299999999999867995689099-999
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=391.34 Aligned_cols=255 Identities=21% Similarity=0.249 Sum_probs=204.2
Q ss_pred HCCCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCEEEEEE
Q ss_conf 0289775411410086689999987--9089999935899999037999999998259997001305347--71289997
Q 002719 526 ATHNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVYE 601 (888)
Q Consensus 526 ~~~~y~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~~~~~~~~~~~Ei~iL~~L~HpnIv~l~g~~~--~~~~lV~E 601 (888)
....|....+||+|+||.||+|.+. +..||||++..... +.+|+.+|+.|+|||||++++++. ...|+|||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 53351768685138780999999889998999999788886-----9999999985799899939999998999999996
Q ss_pred ECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEECCCCCCCCCCC
Q ss_conf 348999444310269999999888999999999999998523999602033157908984799-2000044321024544
Q 002719 602 YLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANF-VSKLSDFGISRFLSQN 680 (888)
Q Consensus 602 y~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~-~vKL~DFGla~~~~~~ 680 (888)
||+||+|.+++... ..+++..+..|+.|++.||.|||+ ++||||||||+||||+.++ .+||+|||+|+.+...
T Consensus 131 y~~gg~L~~~l~~~---~~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~ 204 (336)
T 4g3f_A 131 LLEGGSLGQLIKQM---GCLPEDRALYYLGQALEGLEYLHT---RRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPD 204 (336)
T ss_dssp CCTTCBHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHT---TTEECSCCCGGGEEECTTSCCEEECCCTTCEEC---
T ss_pred CCCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHH---CCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCC
T ss_conf 65998699999876---999999999999999999999998---890426167788799589997999627877685678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 44678864111379999866678111114999960468889999999990999999855899998410000125877899
Q 002719 681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD 760 (888)
Q Consensus 681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~elltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~ 760 (888)
...... ......+||+.|+|||++.+..|+.++|||||||+||+|+||++||.............. .. +....
T Consensus 205 ~~~~~~---~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~--~~--~~~~~ 277 (336)
T 4g3f_A 205 GLGKSL---LTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIAS--EP--PPIRE 277 (336)
T ss_dssp ------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHH--SC--CGGGG
T ss_pred CCCCCE---ECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC--CC--CCCHH
T ss_conf 765402---217854558020089998899989089999999999999978699899899999999980--89--98002
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 993569999999999850097999996999999730000
Q 002719 761 WPFVQAEQLANLAMRCCEMSRKSRPELGKDVWRVLEPMR 799 (888)
Q Consensus 761 ~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v~~~L~~l~ 799 (888)
.|...+..+.+|+.+||+.+|.+||++ .++++.|....
T Consensus 278 ~~~~~s~~~~~li~~~L~~dP~~R~sa-~el~~~l~~~l 315 (336)
T 4g3f_A 278 IPPSCAPLTAQAIQEGLRKEPVHRASA-MELRRKVGKAL 315 (336)
T ss_dssp SCTTSCHHHHHHHHHHTCSSGGGSCCH-HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCH-HHHHHHHHHHH
T ss_conf 586679999999999762897689599-99999999997
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=387.34 Aligned_cols=244 Identities=25% Similarity=0.358 Sum_probs=204.3
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC--CEEEEEEEECCC---CCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCEEEEE
Q ss_conf 89775411410086689999987--908999993589---9999037999999998259997001305347--7128999
Q 002719 528 HNFDPSLKIGEGGYGSIYKGLLR--HMQVAIKMLHPH---SLQGPSEFQQEIDILSKIRHPNLVTLVGACP--EVWTLVY 600 (888)
Q Consensus 528 ~~y~~~~~LG~G~fG~Vy~g~~~--~~~VAIK~l~~~---~~~~~~~~~~Ei~iL~~L~HpnIv~l~g~~~--~~~~lV~ 600 (888)
++|++.+.||+|+||+||++... +..||||++.+. .......+.+|+.+|+.|+|||||++++++. +..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCCCCC
Q ss_conf 73489994443102699999998889999999999999985239996020331579089847992000044321024544
Q 002719 601 EYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQN 680 (888)
Q Consensus 601 Ey~~~gsL~~~L~~~~~~~~l~~~~~~~ia~qia~aL~~LH~~~~~gIiHrDLKp~NILld~~~~vKL~DFGla~~~~~~ 680 (888)
||++||+|.+++... ..+++.....++.||+.||.|||+ ++|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~---~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKI---GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHH---SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 648998999999874---999999999999999999999998---87826878789969858988899876875025778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 44678864111379999866678111114999960468889999999990999999855899998410000125877899
Q 002719 681 EISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKNLLDPLAGD 760 (888)
Q Consensus 681 ~~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~sDVwSlGviL~elltG~~Pf~~~~~~~~~~~~~~~~~~ld~~~~~ 760 (888)
..... ....+||+.|+|||++.+..|+.++|||||||+||+|+||++||...+........... ...
T Consensus 186 ~~~~~------~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~-------~~~ 252 (311)
T 4aw0_A 186 SKQAR------ANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKL-------EYD 252 (311)
T ss_dssp TTCCC------BCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT-------CCC
T ss_pred CCCCC------CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC-------CCC
T ss_conf 77654------36755680307998976899996898998999999997498998997999999999719-------999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 9935699999999998500979999969999
Q 002719 761 WPFVQAEQLANLAMRCCEMSRKSRPELGKDV 791 (888)
Q Consensus 761 ~p~~~~~~l~~Li~~Cl~~~p~~RPs~~~~v 791 (888)
+|...+..+.+|+.+||+.||.+||++ +++
T Consensus 253 ~p~~~s~~~~dli~~lL~~dp~~R~t~-~e~ 282 (311)
T 4aw0_A 253 FPEKFFPKARDLVEKLLVLDATKRLGC-EEM 282 (311)
T ss_dssp CCTTCCHHHHHHHHHHSCSSGGGSTTS-GGG
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHCCCH-HHH
T ss_conf 996569999999999762897578096-797
Done!