Query 002721
Match_columns 888
No_of_seqs 568 out of 6009
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 18:47:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002721.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1436-1440//hhsearch_pdb/002721hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 585.7 32.8 458 22-489 8-484 (768)
2 4ecn_A Leucine-rich repeat pro 1.0 1 1 478.0 24.5 450 24-488 267-844 (876)
3 4eco_A Uncharacterized protein 1.0 1 1 471.3 26.3 450 24-487 28-603 (636)
4 3rgz_A Protein brassinosteroid 1.0 1 1 467.2 24.9 455 65-521 202-753 (768)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 447.9 37.6 455 50-511 13-564 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 433.4 30.3 435 53-489 14-518 (606)
7 3j0a_A TOLL-like receptor 5; m 1.0 1 1 426.7 32.7 420 64-489 49-565 (844)
8 1ziw_A TOLL-like receptor 3; i 1.0 1 1 424.3 31.8 423 63-486 25-495 (680)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 423.7 32.6 421 65-488 59-540 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 423.0 33.0 455 49-511 5-562 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=585.70 Aligned_cols=458 Identities=31% Similarity=0.483 Sum_probs=323.1
Q ss_pred CCCCCCHHHHHHHHHHCC----CCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC---CC-CCCCCCCCCEEEC
Q ss_conf 269999999999752125----899999999999820037509999199999399986334---33-4458999989948
Q 002721 22 FAQLNDEPTLLAINKELI----VPGWGVNGTNFCNWKGIDCDLNQAFVVKLDLSRLQLRGN---IT-LVSELKALKRLDL 93 (888)
Q Consensus 22 ~~~~~~~~~l~~~~~~~~----~~~w~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~---~~-~~~~l~~L~~L~L 93 (888)
.+..+|+.||++||+++. +++|. .++|||.|+||+|+ +++|+.+|+++..+.|. ++ .+..+++|+.+++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCC-TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 687899999999996678962146878-99987688413878--992789877899867755766965731680224678
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCCCCCC-CCCCCCCEEEECCCCC
Q ss_conf 99957435998988999998987767989998888--78899751499928984556668433-4665323899427877
Q 002721 94 SNNAFSGTIPSAFGNLSELEFLDLSLNKFGGVIPR--ELGSLKDLRFFNISNNVLVGEIPDEL-KSLEKLEDFQVSSNKL 170 (888)
Q Consensus 94 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l 170 (888)
+.|.+. .+|..|+.+++|++|+|++|.+++.+|. .++.+++|++|+|++|.+.+..|..+ ..+++|+.|++++|.+
T Consensus 85 ~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 688867-8703324578899898989857870789678727889998989688267747977856388999898979835
Q ss_pred CCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCH
Q ss_conf 8998843---2334445178524556458778777872346520101555889788885578886469822756789910
Q 002721 171 NGSIPFW---VGNLTNLRVFTAYENQLVGEIPDNLGSVSELELLNLHSNQLEGPIPKSIFASGKLEVLVLTQNRLTGDIP 247 (888)
Q Consensus 171 ~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 247 (888)
++..|.. +.++++|++|++++|.+++..|. ..+++|++|+|++|++++.+|. +..+++|++|++++|++++..|
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred CCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCC
T ss_conf 885871556643589889898978803465784--5478689898928827887711-1269999989794885878165
Q ss_pred HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 120168766604413884654358765457875199821368999889234688-9786899523766334894435777
Q 002721 248 ELVGHCKSLSNIRIGNNDLVGVIPRAIGNVSGLTYFEADNNNLSGEIVPEFSQC-SNLTLLNLASNGFTGVIPPELGQLI 326 (888)
Q Consensus 248 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~ 326 (888)
..|..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|+.|++++|.+++.+|..+..++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 77744888898989888665716724--3687898979178557725888884468688998968967784236775587
Q ss_pred CCCEEEECCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCHHCCCC-CCCEECCCCCCCCCCCCCCCCC--CCCCEE
Q ss_conf 7417770144123767611-00257410998258858888870000446-7536205677564236888424--456408
Q 002721 327 NLQELILYENSLFGEIPKS-ILACKNLNKLDLSNNRFNGTIPNAICDMS-RLQYLLLGQNSLKGEIPHEIGN--CMKLLQ 402 (888)
Q Consensus 327 ~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~L~~N~l~~~~p~~~~~--l~~L~~ 402 (888)
+|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+.+|..+..++ +|+.|++++|.+.+.+|..+.. +++|+.
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~ 398 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCE
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCE
T ss_conf 76677897885257379788724888878848478437623098986322771998627874787676665332477618
Q ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCC
Q ss_conf 98305415456998633322102343146731343698232499996499920784556886000036645099863884
Q 002721 403 LHIGSNYLTGSIPPEIGHIRNLQIALNLSFNHLHGSLPPELGKLDKLVSFDVSNNQLSGTIPSALKGMLSLIEVNFSNNL 482 (888)
Q Consensus 403 L~l~~N~l~~~~p~~~~~l~~L~~~L~ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~ 482 (888)
|++++|.+++.+|..+.++.+|+ .|++++|++++.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|.
T Consensus 399 L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 399 LYLQNNGFTGKIPPTLSNCSELV-SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EECCSSEEEEECCGGGGGCTTCC-EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCC
T ss_conf 98977846542487775689879-89895884668546777449988989897881547189788287773299901995
Q ss_pred CCCCCCC
Q ss_conf 8455899
Q 002721 483 LTGPVPS 489 (888)
Q Consensus 483 l~~~~p~ 489 (888)
+++.+|.
T Consensus 478 l~~~~p~ 484 (768)
T 3rgz_A 478 LTGEIPS 484 (768)
T ss_dssp CCSCCCG
T ss_pred CCCCCCH
T ss_conf 1375887
No 2
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=478.03 Aligned_cols=450 Identities=18% Similarity=0.255 Sum_probs=377.5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCC----CCC--CCC------------EEEEECCCCCEEEEEECCCCCCCCCCC-CCCC
Q ss_conf 999999999975212589999999----999--982------------003750999919999939998633433-4458
Q 002721 24 QLNDEPTLLAINKELIVPGWGVNG----TNF--CNW------------KGIDCDLNQAFVVKLDLSRLQLRGNIT-LVSE 84 (888)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~w~~~~----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l~~~~~-~~~~ 84 (888)
...|..||++||+++..++|+.++ .+| |+| .||.|+. .++|+.++|+++++.|.++ .++.
T Consensus 267 ~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~ 345 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQ 345 (876)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGG
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCCCCCHHHHC
T ss_conf 3178999999999737999886898653367764034666545335768428369-997989987247899948557741
Q ss_pred CCCCCEEEC-CCCCCCCCCCCCC---------------------------------------------------CCCCCC
Q ss_conf 999989948-9995743599898---------------------------------------------------899999
Q 002721 85 LKALKRLDL-SNNAFSGTIPSAF---------------------------------------------------GNLSEL 112 (888)
Q Consensus 85 l~~L~~L~L-~~n~l~~~~p~~~---------------------------------------------------~~l~~L 112 (888)
|++|++|+| ++|.+.|..|-.. .....+
T Consensus 346 L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l 425 (876)
T 4ecn_A 346 LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425 (876)
T ss_dssp CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCC
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 55562843012563356664222344544115678887776666542037511156787877650733243222354423
Q ss_pred CEEECCC--CCCCCCCCCCCCCCCCCEEEECCCCCCCC-----------------CCCCCCC--CCCCCCEEEECCCCCC
Q ss_conf 8987767--98999888878899751499928984556-----------------6684334--6653238994278778
Q 002721 113 EFLDLSL--NKFGGVIPRELGSLKDLRFFNISNNVLVG-----------------EIPDELK--SLEKLEDFQVSSNKLN 171 (888)
Q Consensus 113 ~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------~~p~~~~--~l~~L~~L~ls~N~l~ 171 (888)
..+.++. |++++ +|..|+.+++|++|+|++|.+++ .+|..+. ++++|+.|+|++|.+.
T Consensus 426 ~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 426 KDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred HHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC
T ss_conf 12040566676152-11887569998789796886788746532233222222445874440255999778987189887
Q ss_pred CCCCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCCCC-------CCCCEEECCCCCCCCCCC--CCCCCCCCCEEEECCC
Q ss_conf 9988432334445178524556-458-7787778723-------465201015558897888--8557888646982275
Q 002721 172 GSIPFWVGNLTNLRVFTAYENQ-LVG-EIPDNLGSVS-------ELELLNLHSNQLEGPIPK--SIFASGKLEVLVLTQN 240 (888)
Q Consensus 172 ~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N 240 (888)
+.+|..+.++++|+.|++++|+ +++ .+|..++.++ +|+.|+|++|+++ .+|. .+..+++|+.|+|++|
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred CCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHHCCCCCCEEECCCC
T ss_conf 527387737999899989689876566461778752330155688319982289477-6187235515898898989799
Q ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCCC--CCEEEEECCCCCCC
Q ss_conf 678991012016876660441388465435876545787-519982136899988923468897--86899523766334
Q 002721 241 RLTGDIPELVGHCKSLSNIRIGNNDLVGVIPRAIGNVSG-LTYFEADNNNLSGEIVPEFSQCSN--LTLLNLASNGFTGV 317 (888)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~ 317 (888)
+++ .+| .|..+++|+.|+|++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+.
T Consensus 584 ~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 584 KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 825-621-2247985007987187125-035877525114989998499787-476445225567778897708847886
Q ss_pred CCCCC---C--CCCCCCEEEECCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCCHHCC--------CCCCCEECCCC
Q ss_conf 89443---5--77774177701441237676110-02574109982588588888700004--------46753620567
Q 002721 318 IPPEL---G--QLINLQELILYENSLFGEIPKSI-LACKNLNKLDLSNNRFNGTIPNAICD--------MSRLQYLLLGQ 383 (888)
Q Consensus 318 ~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~--------~~~L~~L~L~~ 383 (888)
+|... . .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|++. .+|..+.. +++|+.|+|++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred CCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCC
T ss_conf 432000000135797688983199688-659788713898899989899688-549678455533432148715898889
Q ss_pred CCCCCCCCCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCC------CCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 756423688842--4456408983054154569986333221023431467------31343698232499996499920
Q 002721 384 NSLKGEIPHEIG--NCMKLLQLHIGSNYLTGSIPPEIGHIRNLQIALNLSF------NHLHGSLPPELGKLDKLVSFDVS 455 (888)
Q Consensus 384 N~l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~~L~ls~------N~l~~~~p~~~~~l~~L~~LdLs 455 (888)
|.++ .+|..+. .+++|+.|++++|.+++ +|..+.++++|+ .|++++ |++.+.+|..+..+++|+.|+|+
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~-~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLK-AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCC-EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCC-CCHHHHHHCCCCCCCEEEECCCCCCC-CCHHHHCCCCCC-EEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 9786-65277624427986989908997876-105661599988-99887997766563244486888369987889887
Q ss_pred CCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 784556886000036645099863884845589
Q 002721 456 NNQLSGTIPSALKGMLSLIEVNFSNNLLTGPVP 488 (888)
Q Consensus 456 ~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p 488 (888)
+|.+ +.+|..+. ++|+.|++++|++...-+
T Consensus 815 ~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 815 SNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp SSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CCCC-CCCCHHHC--CCCCEEECCCCCCCCCCH
T ss_conf 9978-74087662--877889997998881176
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=471.32 Aligned_cols=450 Identities=19% Similarity=0.288 Sum_probs=361.7
Q ss_pred CCCCHHHHHHHHHHCCCC-------------CCCCCCCCCCCC---EEEEECCCCCEEEEEECCCCCCCCCCC-CCCCCC
Q ss_conf 999999999975212589-------------999999999982---003750999919999939998633433-445899
Q 002721 24 QLNDEPTLLAINKELIVP-------------GWGVNGTNFCNW---KGIDCDLNQAFVVKLDLSRLQLRGNIT-LVSELK 86 (888)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~-------------~w~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~~~~~-~~~~l~ 86 (888)
...|+.||.++++++.-+ +|.. ++|||.| .||.|+.. ++|+.++++++++.|.++ .++.++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEECCC-CCEEEEEECCCCCCCCCCHHHHCCC
T ss_conf 77889999999997589974547767765788777-998000147798487678-9788998427665772885785684
Q ss_pred CCCEEECCCCCCC------C---------------------------CCCCCC-------------------CCCCCCCE
Q ss_conf 9989948999574------3---------------------------599898-------------------89999989
Q 002721 87 ALKRLDLSNNAFS------G---------------------------TIPSAF-------------------GNLSELEF 114 (888)
Q Consensus 87 ~L~~L~L~~n~l~------~---------------------------~~p~~~-------------------~~l~~L~~ 114 (888)
+|++|+|++|++. + ..|..+ .....++.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_conf 51189876885123774334532356733888888876577755411706667788777764275546541013344213
Q ss_pred EECC--CCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-----------------CCCCCC--CCCCCCEEEECCCCCCCC
Q ss_conf 8776--7989998888788997514999289845566-----------------684334--665323899427877899
Q 002721 115 LDLS--LNKFGGVIPRELGSLKDLRFFNISNNVLVGE-----------------IPDELK--SLEKLEDFQVSSNKLNGS 173 (888)
Q Consensus 115 L~Ls--~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~~--~l~~L~~L~ls~N~l~~~ 173 (888)
+.+. .|++++ +|..|+.+++|++|+|++|.+++. +|..+. ++++|+.|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred HHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf 001013677750-7877725647878988688236642322122222100102486322004468788898048857762
Q ss_pred CCCCCCCCCCCCEEECCCCC-CCC-CCCCCCCCC------CCCCCEEECCCCCCCCCCC--CCCCCCCCCEEEECCCCCC
Q ss_conf 88432334445178524556-458-778777872------3465201015558897888--8557888646982275678
Q 002721 174 IPFWVGNLTNLRVFTAYENQ-LVG-EIPDNLGSV------SELELLNLHSNQLEGPIPK--SIFASGKLEVLVLTQNRLT 243 (888)
Q Consensus 174 ~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~ 243 (888)
+|..+.++++|+.|++++|+ +++ .+|..++.+ ++|++|+|++|+++ .+|. .+..+++|+.|++++|+++
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 838883499978897847988766533578875430465788888989799377-6676555425788898969088070
Q ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEEEECCCCCCCCCCCCCCCC--CCCEEEEECCCCCCCCCC
Q ss_conf 991012016876660441388465435876545787-51998213689998892346889--786899523766334894
Q 002721 244 GDIPELVGHCKSLSNIRIGNNDLVGVIPRAIGNVSG-LTYFEADNNNLSGEIVPEFSQCS--NLTLLNLASNGFTGVIPP 320 (888)
Q Consensus 244 ~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~ 320 (888)
+.+| .|..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..+. +|+.|++++|.+++..|.
T Consensus 344 g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 344 GKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp EECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred CCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 5166-6478898898989899403-033756510236868985298275-446655333457668897748857886524
Q ss_pred CCC-------CCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCH-HCCCC-------CCCEECCCCCC
Q ss_conf 435-------7777417770144123767611002574109982588588888700-00446-------75362056775
Q 002721 321 ELG-------QLINLQELILYENSLFGEIPKSILACKNLNKLDLSNNRFNGTIPNA-ICDMS-------RLQYLLLGQNS 385 (888)
Q Consensus 321 ~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~-------~L~~L~L~~N~ 385 (888)
.+. .+++|+.|++++|.+....+..+..+++|+.|++++|+++ .+|.. +.... +|+.|++++|.
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCC
T ss_conf 42002201125898888977279668678788715898898989799788-73978840440012214773389896993
Q ss_pred CCCCCCCCCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHC------CCCCCCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 6423688842--44564089830541545699863332210234314------673134369823249999649992078
Q 002721 386 LKGEIPHEIG--NCMKLLQLHIGSNYLTGSIPPEIGHIRNLQIALNL------SFNHLHGSLPPELGKLDKLVSFDVSNN 457 (888)
Q Consensus 386 l~~~~p~~~~--~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~~L~l------s~N~l~~~~p~~~~~l~~L~~LdLs~N 457 (888)
++ .+|..+. .+++|+.|++++|.+++ +|..+.++++|+ .|++ ++|++.+.+|..++.+++|+.|++++|
T Consensus 500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~-~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK-GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp CC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC-EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CC-CCCHHHHHCCCCCCCEEECCCCCCCC-CCHHHHCCCCCC-EEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCC
T ss_conf 88-16854534458876989898998877-682353088878-7889888665667312127377856998788989899
Q ss_pred CCCCCCCHHHCCCCCCEEEECCCCCCCCCC
Q ss_conf 455688600003664509986388484558
Q 002721 458 QLSGTIPSALKGMLSLIEVNFSNNLLTGPV 487 (888)
Q Consensus 458 ~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~ 487 (888)
.+ +.+|..+. ++|+.|++++|++.+.-
T Consensus 577 ~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 577 DI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred CC-CCCCHHHH--CCCCEEECCCCCCCCCC
T ss_conf 47-70597683--86789987699876336
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=467.20 Aligned_cols=455 Identities=36% Similarity=0.578 Sum_probs=322.0
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--------------------
Q ss_conf 999993999863343344589999899489995743599898899999898776798999--------------------
Q 002721 65 VVKLDLSRLQLRGNITLVSELKALKRLDLSNNAFSGTIPSAFGNLSELEFLDLSLNKFGG-------------------- 124 (888)
Q Consensus 65 v~~l~l~~~~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-------------------- 124 (888)
+..++++++.+.+.++.+..+++|++|+|++|.+++.+|..|.++++|++|+|++|.+++
T Consensus 202 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF 281 (768)
T ss_dssp CCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 89898928827887711126999998979488587816577744888898989888665716724368789897917855
Q ss_pred --CCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCC
Q ss_conf --888878899-75149992898455666843346653238994278778998843-23344451785245564587787
Q 002721 125 --VIPRELGSL-KDLRFFNISNNVLVGEIPDELKSLEKLEDFQVSSNKLNGSIPFW-VGNLTNLRVFTAYENQLVGEIPD 200 (888)
Q Consensus 125 --~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~ 200 (888)
.+|..+..+ ++|++|+|++|.+++.+|..|..+++|+.|++++|.+++.+|.. +.++++|++|++++|++++.+|.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 77258888844686889989689677842367755877667789788525737978872488887884847843762309
Q ss_pred CCCCCC-CCCCEEECCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 778723-4652010155588978888557--8886469822756789910120168766604413884654358765457
Q 002721 201 NLGSVS-ELELLNLHSNQLEGPIPKSIFA--SGKLEVLVLTQNRLTGDIPELVGHCKSLSNIRIGNNDLVGVIPRAIGNV 277 (888)
Q Consensus 201 ~~~~l~-~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 277 (888)
.+..++ +|++|++++|++++.+|..+.. +++|+.|++++|++++..|..|.++++|+.|++++|.+++.+|..+..+
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 441 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred HHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCC
T ss_conf 89863227719986278747876766653324776189897784654248777568987989895884668546777449
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 87519982136899988923468897868995237663348944357777417770144123767611002574109982
Q 002721 278 SGLTYFEADNNNLSGEIVPEFSQCSNLTLLNLASNGFTGVIPPELGQLINLQELILYENSLFGEIPKSILACKNLNKLDL 357 (888)
Q Consensus 278 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 357 (888)
++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 98898989788154718978828777329990199513758878816998998975399518968768856899998989
Q ss_pred CCCCCCCCCCCHHCCCCCCCEECCCCCCCCCCCCCCC-------------------------------------------
Q ss_conf 5885888887000044675362056775642368884-------------------------------------------
Q 002721 358 SNNRFNGTIPNAICDMSRLQYLLLGQNSLKGEIPHEI------------------------------------------- 394 (888)
Q Consensus 358 ~~N~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~------------------------------------------- 394 (888)
++|++.+.+|..+..+++|+.|++++|++.+.+|..+
T Consensus 522 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (768)
T 3rgz_A 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601 (768)
T ss_dssp CSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCG
T ss_pred CCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 78943374887770889899898988846882795786042122320134542111134443222233222100135563
Q ss_pred ---------------------------CCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf ---------------------------24456408983054154569986333221023431467313436982324999
Q 002721 395 ---------------------------GNCMKLLQLHIGSNYLTGSIPPEIGHIRNLQIALNLSFNHLHGSLPPELGKLD 447 (888)
Q Consensus 395 ---------------------------~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~~L~ls~N~l~~~~p~~~~~l~ 447 (888)
..++.|+.|++++|.++|.+|..++++..|+ .|++++|+++|.+|.+++.++
T Consensus 602 ~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF-ILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC-EEECCSSCCCSCCCGGGGGCT
T ss_pred HHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCCHHHHCCC
T ss_conf 2320023211001133100462743340335665797858801555877884141578-784868803887896784777
Q ss_pred CCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96499920784556886000036645099863884845589999898899975567988878788788899999
Q 002721 448 KLVSFDVSNNQLSGTIPSALKGMLSLIEVNFSNNLLTGPVPSFVPFQKSPNSSFFGNKGLCGEPLSFSCGNANG 521 (888)
Q Consensus 448 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~~~~ 521 (888)
+|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|+..++.++...+|.||+++||.|++ .|....+
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCCC
T ss_conf 899898978802386886775788789787968815560899601024897775698321088776-7888766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=447.87 Aligned_cols=455 Identities=22% Similarity=0.230 Sum_probs=351.2
Q ss_pred CCCCEEEEECCCCCEEEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 9982003750999919999939998633433-4458999989948999574359-9898899999898776798999888
Q 002721 50 FCNWKGIDCDLNQAFVVKLDLSRLQLRGNIT-LVSELKALKRLDLSNNAFSGTI-PSAFGNLSELEFLDLSLNKFGGVIP 127 (888)
Q Consensus 50 ~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p 127 (888)
.|+|..|.+ ....+..||++++.+.+..+ .+..+++|++|+|++|++.+.+ |..|.++++|++|+|++|.+++..|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 799777898--999868888877867832966776621370886789977444197785378778888798995853197
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 87889975149992898455666843--3466532389942787789988-43233444517852455645877877787
Q 002721 128 RELGSLKDLRFFNISNNVLVGEIPDE--LKSLEKLEDFQVSSNKLNGSIP-FWVGNLTNLRVFTAYENQLVGEIPDNLGS 204 (888)
Q Consensus 128 ~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 204 (888)
..|+.+++|++|+|++|.+++..|.. +..+++|+.|++++|.+++..+ ..|.++++|+.|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCC
T ss_conf 67157866587017678897340467645566799988898786423256655763889898989898477667887535
Q ss_pred C--CCCCCEEECCCCCCCCCCCCCCCCCC------CCEEEECCCCCCCCCHHHHCC------------------------
Q ss_conf 2--34652010155588978888557888------646982275678991012016------------------------
Q 002721 205 V--SELELLNLHSNQLEGPIPKSIFASGK------LEVLVLTQNRLTGDIPELVGH------------------------ 252 (888)
Q Consensus 205 l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~~~~~~~~------------------------ 252 (888)
+ ++|+.|+++.|.+.+..|..+..+.+ |+.|++++|.+++..+..+..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCC
T ss_conf 56775035789788666554553322377223574007965788686567788876427441001121212234664445
Q ss_pred --------------CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf --------------876660441388465435876545787519982136899988923468897868995237663348
Q 002721 253 --------------CKSLSNIRIGNNDLVGVIPRAIGNVSGLTYFEADNNNLSGEIVPEFSQCSNLTLLNLASNGFTGVI 318 (888)
Q Consensus 253 --------------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 318 (888)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred CCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 66889855652555478618989799455158634525899999989798189879688368889998989899788518
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC------------------C-------------
Q ss_conf 944357777417770144123767611002574109982588588888------------------7-------------
Q 002721 319 PPELGQLINLQELILYENSLFGEIPKSILACKNLNKLDLSNNRFNGTI------------------P------------- 367 (888)
Q Consensus 319 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~------------------p------------- 367 (888)
|..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++.. |
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~ 410 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE 410 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCS
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 78846899999898989987762866613788899988989977861688982320058997231455455431221456
Q ss_pred ---------CHHCCCCCCCEECCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCC-----CCCCCCCCCCCCHHHHHHCCC
Q ss_conf ---------0000446753620567756423688-8424456408983054154-----569986333221023431467
Q 002721 368 ---------NAICDMSRLQYLLLGQNSLKGEIPH-EIGNCMKLLQLHIGSNYLT-----GSIPPEIGHIRNLQIALNLSF 432 (888)
Q Consensus 368 ---------~~~~~~~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~l~~N~l~-----~~~p~~~~~l~~L~~~L~ls~ 432 (888)
..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.++ +..+..+.++++|+ .|++++
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~-~L~Ls~ 489 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ-VLYLNH 489 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE-CCCCCH
T ss_pred CCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC-EEECCC
T ss_conf 7534575566651277666666778712555543335668731002477773644101355355544755365-777889
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3134369823249999649992078455688600003664509986388484558999989889997556798887878
Q 002721 433 NHLHGSLPPELGKLDKLVSFDVSNNQLSGTIPSALKGMLSLIEVNFSNNLLTGPVPSFVPFQKSPNSSFFGNKGLCGEP 511 (888)
Q Consensus 433 N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 511 (888)
|++++.+|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.... ......+.+|+..|.++
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--SLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS--SCCEEEEEEECCCCSSS
T ss_pred CCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC--CCCEEEECCCCCCCCCC
T ss_conf 856553955704501221569999978745710110--0455888988847888966837--76889931997025366
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=433.44 Aligned_cols=435 Identities=20% Similarity=0.148 Sum_probs=319.6
Q ss_pred CEEEEECCC---------CCEEEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 200375099---------9919999939998633433-445899998994899957435998988999998987767989
Q 002721 53 WKGIDCDLN---------QAFVVKLDLSRLQLRGNIT-LVSELKALKRLDLSNNAFSGTIPSAFGNLSELEFLDLSLNKF 122 (888)
Q Consensus 53 w~gv~c~~~---------~~~v~~l~l~~~~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 122 (888)
+.-++|... ...+..++++++.+.+..+ .+..+++|++|+|++|.+.+..|..|.++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCC
T ss_conf 72377777980628677898675898158734717966725676652897889835524851136843367644889856
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99888878899751499928984556668433466532389942787789988432334445178524556458778777
Q 002721 123 GGVIPRELGSLKDLRFFNISNNVLVGEIPDELKSLEKLEDFQVSSNKLNGSIPFWVGNLTNLRVFTAYENQLVGEIPDNL 202 (888)
Q Consensus 123 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 202 (888)
++..|..|+.+++|++|++++|.+++..+..+..+++|+.|++++|.+++.....+..+++|+.|++++|.+++..|..|
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 54586552344215376521267665781012237822389887983411476545687656877765684455496563
Q ss_pred CCCCCCC--CEEECCCCCCCCCCCCCCCC---------------------------------------------------
Q ss_conf 8723465--20101555889788885578---------------------------------------------------
Q 002721 203 GSVSELE--LLNLHSNQLEGPIPKSIFAS--------------------------------------------------- 229 (888)
Q Consensus 203 ~~l~~L~--~L~L~~N~l~~~~p~~~~~l--------------------------------------------------- 229 (888)
+.+++|+ .|++++|++++..|..+...
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHC
T ss_conf 32215640389667981475486673001001355677266777765133564422002011026412268667430320
Q ss_pred CCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 88646982275678991012016876660441388465435876545787519982136899988923468897868995
Q 002721 230 GKLEVLVLTQNRLTGDIPELVGHCKSLSNIRIGNNDLVGVIPRAIGNVSGLTYFEADNNNLSGEIVPEFSQCSNLTLLNL 309 (888)
Q Consensus 230 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 309 (888)
.+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 254 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred CCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 75059994457658557777445667888956288267-77821416546888977168768676023301576898889
Q ss_pred ECCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCC--CCCCCCCCCCEEEECCCCCCCCCCCCHHCCCCCCCEECCCCCCC
Q ss_conf 23766334894-4357777417770144123767--61100257410998258858888870000446753620567756
Q 002721 310 ASNGFTGVIPP-ELGQLINLQELILYENSLFGEI--PKSILACKNLNKLDLSNNRFNGTIPNAICDMSRLQYLLLGQNSL 386 (888)
Q Consensus 310 ~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~L~~N~l 386 (888)
++|.+.+.+|. .+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++.+..|..|..+++|+.|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 89974443462455066758988788996664567522105678889898989967757888734774577687888867
Q ss_pred CCCCCCC-CCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC---CCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf 4236888-424456408983054154569986333221023431467313436---982324999964999207845568
Q 002721 387 KGEIPHE-IGNCMKLLQLHIGSNYLTGSIPPEIGHIRNLQIALNLSFNHLHGS---LPPELGKLDKLVSFDVSNNQLSGT 462 (888)
Q Consensus 387 ~~~~p~~-~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~~L~ls~N~l~~~---~p~~~~~l~~L~~LdLs~N~l~~~ 462 (888)
.+..+.. +..+++|+.|++++|.+.+..|..+..+++|+ .|++++|++++. .+..+..+++|+.|++++|.+++.
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ-HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC-EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCC-EEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 7756521241765588898989855776877873788788-898989988854345431240488766887999966706
Q ss_pred CCHHHCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 860000366450998638848455899
Q 002721 463 IPSALKGMLSLIEVNFSNNLLTGPVPS 489 (888)
Q Consensus 463 ~p~~~~~l~~L~~l~ls~N~l~~~~p~ 489 (888)
.|..+..+++|++|++++|++++..|.
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 864632656788898989806868966
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=426.72 Aligned_cols=420 Identities=22% Similarity=0.249 Sum_probs=341.0
Q ss_pred EEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--CCCCCCCEEE
Q ss_conf 19999939998633433--4458999989948999574359989889999989877679899988887--8899751499
Q 002721 64 FVVKLDLSRLQLRGNIT--LVSELKALKRLDLSNNAFSGTIPSAFGNLSELEFLDLSLNKFGGVIPRE--LGSLKDLRFF 139 (888)
Q Consensus 64 ~v~~l~l~~~~l~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L 139 (888)
.+..|+++++...+.++ .+..+.+|++|+|++|.+.+..|..|+++++|++|+|++|.+++..|.. |+.+++|++|
T Consensus 49 ~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L 128 (844)
T 3j0a_A 49 QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128 (844)
T ss_dssp SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEE
T ss_pred CCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 37088678997744419778537877888879899585319767157866587017678897340467645566799988
Q ss_pred ECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCCCC------CCC
Q ss_conf 928984556668-433466532389942787789988432334--44517852455645877877787234------652
Q 002721 140 NISNNVLVGEIP-DELKSLEKLEDFQVSSNKLNGSIPFWVGNL--TNLRVFTAYENQLVGEIPDNLGSVSE------LEL 210 (888)
Q Consensus 140 ~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~ 210 (888)
+|++|.+++..+ ..|.++++|+.|++++|.+++..+..+..+ ++|+.|+++.|.+++..|..++.+.+ |+.
T Consensus 129 ~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred ECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEE
T ss_conf 89878642325665576388989898989847766788753556775035789788666554553322377223574007
Q ss_pred EEECCCCCCCCCCCCCCC--------------------------------------CCCCCEEEECCCCCCCCCHHHHCC
Q ss_conf 010155588978888557--------------------------------------888646982275678991012016
Q 002721 211 LNLHSNQLEGPIPKSIFA--------------------------------------SGKLEVLVLTQNRLTGDIPELVGH 252 (888)
Q Consensus 211 L~L~~N~l~~~~p~~~~~--------------------------------------l~~L~~L~L~~N~l~~~~~~~~~~ 252 (888)
|++++|++++..+..+.. .++|+.|++++|.+.+..+..|..
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~ 288 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET 288 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS
T ss_pred EECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHC
T ss_conf 96578868656778887642744100112121223466444566889855652555478618989799455158634525
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 87666044138846543587654578751998213689998892346889786899523766334894435777741777
Q 002721 253 CKSLSNIRIGNNDLVGVIPRAIGNVSGLTYFEADNNNLSGEIVPEFSQCSNLTLLNLASNGFTGVIPPELGQLINLQELI 332 (888)
Q Consensus 253 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 332 (888)
+++|+.|+|++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 368 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEE
T ss_conf 89999998979818987968836888999898989978851878846899999898989987762866613788899988
Q ss_pred ECCCCCCCC------------------CCC----------------------CCCCCCCCEEEECCCCCCCCCCCC-HHC
Q ss_conf 014412376------------------761----------------------100257410998258858888870-000
Q 002721 333 LYENSLFGE------------------IPK----------------------SILACKNLNKLDLSNNRFNGTIPN-AIC 371 (888)
Q Consensus 333 L~~N~l~~~------------------~p~----------------------~~~~l~~L~~L~L~~N~l~~~~p~-~~~ 371 (888)
+++|.+.+. +|. .+..+++|+.|++++|++++..+. .+.
T Consensus 369 Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 448 (844)
T 3j0a_A 369 LRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448 (844)
T ss_dssp EETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 98997786168898232005899723145545543122145675345755666512776666667787125555433356
Q ss_pred CCCCCCEECCCCCCCC-----CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 4467536205677564-----23688842445640898305415456998633322102343146731343698232499
Q 002721 372 DMSRLQYLLLGQNSLK-----GEIPHEIGNCMKLLQLHIGSNYLTGSIPPEIGHIRNLQIALNLSFNHLHGSLPPELGKL 446 (888)
Q Consensus 372 ~~~~L~~L~L~~N~l~-----~~~p~~~~~l~~L~~L~l~~N~l~~~~p~~~~~l~~L~~~L~ls~N~l~~~~p~~~~~l 446 (888)
.+++|+.|++++|.++ +..+..+..+++|+.|++++|.+++..|..+.++.+|+ .|++++|++++..+..+.
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS-EEEEESCCCSSCCCCCCC--
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHH-EEECCCCCCCCCCHHHHH--
T ss_conf 68731002477773644101355355544755365777889856553955704501221-569999978745710110--
Q ss_pred CCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 9964999207845568860000366450998638848455899
Q 002721 447 DKLVSFDVSNNQLSGTIPSALKGMLSLIEVNFSNNLLTGPVPS 489 (888)
Q Consensus 447 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~ 489 (888)
++|+.||+++|++++.+|..+. +|+.+++++|++.|.|+.
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCC
T ss_conf 0455888988847888966837---768899319970253661
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=424.32 Aligned_cols=423 Identities=21% Similarity=0.210 Sum_probs=255.7
Q ss_pred CEEEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 919999939998633433-4458999989948999574359989889999989877679899988887889975149992
Q 002721 63 AFVVKLDLSRLQLRGNIT-LVSELKALKRLDLSNNAFSGTIPSAFGNLSELEFLDLSLNKFGGVIPRELGSLKDLRFFNI 141 (888)
Q Consensus 63 ~~v~~l~l~~~~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 141 (888)
..++.++++++.+.+.++ .+..+++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+.+++|++|+|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 88768889899778759788717876758878899648569778740667688889998567568545303888898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC--CCCCCCCEEECCCCCC
Q ss_conf 89845566684334665323899427877899884323344451785245564587787778--7234652010155588
Q 002721 142 SNNVLVGEIPDELKSLEKLEDFQVSSNKLNGSIPFWVGNLTNLRVFTAYENQLVGEIPDNLG--SVSELELLNLHSNQLE 219 (888)
Q Consensus 142 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~ 219 (888)
++|.+++..|..|..+++|+.|++++|.+++..|..+.++++|+.|++++|.+++..+..+. .+++|+.|++++|+++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC
T ss_conf 89966853966741567888898989952466721112455677797458843652978862446663217988898256
Q ss_pred CCCCCCCCCCC---------------------------CCCEEEECCCCCCCCCHHHHCCCCC--CCEEECCCCCCCCCC
Q ss_conf 97888855788---------------------------8646982275678991012016876--660441388465435
Q 002721 220 GPIPKSIFASG---------------------------KLEVLVLTQNRLTGDIPELVGHCKS--LSNIRIGNNDLVGVI 270 (888)
Q Consensus 220 ~~~p~~~~~l~---------------------------~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~ 270 (888)
+..|..+..++ +|+.|++++|.+++..+..|.+++. |+.|++++|.+.+..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 55815553223445543056646805677787775315100887457743646866751467677888778788767568
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCC-----CCC----CCCCCCCCCCEEEECCCCCCCC
Q ss_conf 8765457875199821368999889234688978689952376633-----489----4435777741777014412376
Q 002721 271 PRAIGNVSGLTYFEADNNNLSGEIVPEFSQCSNLTLLNLASNGFTG-----VIP----PELGQLINLQELILYENSLFGE 341 (888)
Q Consensus 271 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~p----~~~~~l~~L~~L~L~~N~l~~~ 341 (888)
|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|...+ .+| ..|..+++|+.|++++|.+.+.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred CCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 02116741056855778856765865626788855773633132133333554543865624677788887989826878
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCC--CCCHHCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC-C
Q ss_conf 761100257410998258858888--87000044--675362056775642368884244564089830541545699-8
Q 002721 342 IPKSILACKNLNKLDLSNNRFNGT--IPNAICDM--SRLQYLLLGQNSLKGEIPHEIGNCMKLLQLHIGSNYLTGSIP-P 416 (888)
Q Consensus 342 ~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~~--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~~~p-~ 416 (888)
.+..+..+++|+.|++++|.+... ....|..+ +.|+.+++++|++++..|..+..+++|+.|++++|.+.+.+| .
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred CHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCC
T ss_conf 85574065687289887980144323532202455686766889999777677544207788888867787575435755
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC--CCCCHHHCCCCCCEEEECCCCCCCCC
Q ss_conf 63332210234314673134369823249999649992078455--68860000366450998638848455
Q 002721 417 EIGHIRNLQIALNLSFNHLHGSLPPELGKLDKLVSFDVSNNQLS--GTIPSALKGMLSLIEVNFSNNLLTGP 486 (888)
Q Consensus 417 ~~~~l~~L~~~L~ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~--~~~p~~~~~l~~L~~l~ls~N~l~~~ 486 (888)
.+.++.+|+ .|++++|++++..+..|..+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++.
T Consensus 425 ~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 425 EWRGLENIF-EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp GGTTCTTCC-EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCC-EEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
T ss_conf 325754612-78448997542276455007543101101464422566776455578789998999987767
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=423.65 Aligned_cols=421 Identities=19% Similarity=0.190 Sum_probs=212.0
Q ss_pred EEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 9999939998633433-445899998994899957435998988999998987767989998888788997514999289
Q 002721 65 VVKLDLSRLQLRGNIT-LVSELKALKRLDLSNNAFSGTIPSAFGNLSELEFLDLSLNKFGGVIPRELGSLKDLRFFNISN 143 (888)
Q Consensus 65 v~~l~l~~~~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 143 (888)
+..++++++.+.+..+ .+..+.+|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+.+++|++|++++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred CEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCC
T ss_conf 52897889835524851136843367644889856545865523442153765212676657810122378223898879
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCCCCCCC----------------
Q ss_conf 845566684334665323899427877899884323344451--78524556458778777872----------------
Q 002721 144 NVLVGEIPDELKSLEKLEDFQVSSNKLNGSIPFWVGNLTNLR--VFTAYENQLVGEIPDNLGSV---------------- 205 (888)
Q Consensus 144 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~--~L~L~~N~l~~~~p~~~~~l---------------- 205 (888)
|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+ .|++++|.+++..|..|...
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 83411476545687656877765684455496563322156403896679814754866730010013556772667777
Q ss_pred -----------------------------------CCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf -----------------------------------346520101555889788885578886469822756789910120
Q 002721 206 -----------------------------------SELELLNLHSNQLEGPIPKSIFASGKLEVLVLTQNRLTGDIPELV 250 (888)
Q Consensus 206 -----------------------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 250 (888)
.+|+.|++++|++++..+..+..+++|++|++++|+++ ..|..+
T Consensus 219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l 297 (606)
T 3t6q_A 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297 (606)
T ss_dssp HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC
T ss_pred HHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH
T ss_conf 6513356442200201102641226866743032075059994457658557777445667888956288267-778214
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEEECCCCCCCC--CCCCCCCCC
Q ss_conf 1687666044138846543587654578751998213689998892-3468897868995237663348--944357777
Q 002721 251 GHCKSLSNIRIGNNDLVGVIPRAIGNVSGLTYFEADNNNLSGEIVP-EFSQCSNLTLLNLASNGFTGVI--PPELGQLIN 327 (888)
Q Consensus 251 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~ 327 (888)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++.. +..+..+++
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCC
T ss_conf 16546888977168768676023301576898889899744434624550667589887889966645675221056788
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-HHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 41777014412376761100257410998258858888870-00044675362056775642368884244564089830
Q 002721 328 LQELILYENSLFGEIPKSILACKNLNKLDLSNNRFNGTIPN-AICDMSRLQYLLLGQNSLKGEIPHEIGNCMKLLQLHIG 406 (888)
Q Consensus 328 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~ 406 (888)
|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECC
T ss_conf 89898989967757888734774577687888867775652124176558889898985577687787378878889898
Q ss_pred CCCCCCC---CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCC
Q ss_conf 5415456---9986333221023431467313436982324999964999207845568860000366450998638848
Q 002721 407 SNYLTGS---IPPEIGHIRNLQIALNLSFNHLHGSLPPELGKLDKLVSFDVSNNQLSGTIPSALKGMLSLIEVNFSNNLL 483 (888)
Q Consensus 407 ~N~l~~~---~p~~~~~l~~L~~~L~ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l 483 (888)
+|.+++. .+..+..+.+|+ .|++++|++++..|..|+.+++|+.|++++|++++..|..+..++.| .+++++|.+
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLE-ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCC-EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCCCCCCCCCCCHHHCCCCCCC-EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCC
T ss_conf 9988854345431240488766-88799996670686463265678889898980686896684756651-898768941
Q ss_pred CCCCC
Q ss_conf 45589
Q 002721 484 TGPVP 488 (888)
Q Consensus 484 ~~~~p 488 (888)
++.+|
T Consensus 536 ~~~~~ 540 (606)
T 3t6q_A 536 SIILP 540 (606)
T ss_dssp CCCCG
T ss_pred CCCCH
T ss_conf 42687
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=422.99 Aligned_cols=455 Identities=20% Similarity=0.168 Sum_probs=347.6
Q ss_pred CCCCCE----EEEECCC---------CCEEEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 999820----0375099---------9919999939998633433-4458999989948999574359989889999989
Q 002721 49 NFCNWK----GIDCDLN---------QAFVVKLDLSRLQLRGNIT-LVSELKALKRLDLSNNAFSGTIPSAFGNLSELEF 114 (888)
Q Consensus 49 ~~c~w~----gv~c~~~---------~~~v~~l~l~~~~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 114 (888)
++|.|. .++|... ...+..++++++.+.+..+ .+..+++|++|+|++|.+++..|..|.++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCEECCCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCE
T ss_conf 77532178970574688845189888887678878889757737545557766748868877366439777306010688
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCC
Q ss_conf 8776798999888878899751499928984556668433466532389942787789-988432334445178524556
Q 002721 115 LDLSLNKFGGVIPRELGSLKDLRFFNISNNVLVGEIPDELKSLEKLEDFQVSSNKLNG-SIPFWVGNLTNLRVFTAYENQ 193 (888)
Q Consensus 115 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~ 193 (888)
|+|++|++++..|..|+.+++|++|+|++|.+++..+..+..+++|+.|++++|.+++ .+|..+.++++|+.|++++|+
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCC
T ss_conf 67879856304852207865378887037755544511348988779896878852325306867326777788766885
Q ss_pred CCCCCCCCCCCCCCCC----CEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-------------------------
Q ss_conf 4587787778723465----20101555889788885578886469822756789-------------------------
Q 002721 194 LVGEIPDNLGSVSELE----LLNLHSNQLEGPIPKSIFASGKLEVLVLTQNRLTG------------------------- 244 (888)
Q Consensus 194 l~~~~p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------------------- 244 (888)
+++..|..|+.+.+|+ +|++++|++++..+.. +...+|+.|++++|.+++
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred CEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCC-CCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 310573341212034200243004689753257110-5676043352467856166778886026656523141111036
Q ss_pred ---------------------------------CCHH---------------------HHCCCCCCCEEECCCCCCCCCC
Q ss_conf ---------------------------------9101---------------------2016876660441388465435
Q 002721 245 ---------------------------------DIPE---------------------LVGHCKSLSNIRIGNNDLVGVI 270 (888)
Q Consensus 245 ---------------------------------~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~ 270 (888)
..+. .+..+++|+.|++++|.+ +.+
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSC
T ss_pred CCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCEEECCCCCC-CCC
T ss_conf 7741026817766665434745012366555543222354887898771476604435433401177897646667-654
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCC--CCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 87654578751998213689998892346889786899523766334--8944357777417770144123767611002
Q 002721 271 PRAIGNVSGLTYFEADNNNLSGEIVPEFSQCSNLTLLNLASNGFTGV--IPPELGQLINLQELILYENSLFGEIPKSILA 348 (888)
Q Consensus 271 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 348 (888)
| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+++. .|..+..+++|+.|++++|.+. .+|..+..
T Consensus 323 p-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~ 397 (606)
T 3vq2_A 323 P-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMG 397 (606)
T ss_dssp C-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTT
T ss_pred C-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHHHCCC
T ss_conf 6-67-8875564454478685310--002489888797758736877520122146775548678899530-00554068
Q ss_pred CCCCEEEECCCCCCCCCCC-CHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCCCCCCCCCCHHH
Q ss_conf 5741099825885888887-000044675362056775642368884244564089830541545-69986333221023
Q 002721 349 CKNLNKLDLSNNRFNGTIP-NAICDMSRLQYLLLGQNSLKGEIPHEIGNCMKLLQLHIGSNYLTG-SIPPEIGHIRNLQI 426 (888)
Q Consensus 349 l~~L~~L~L~~N~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l~~N~l~~-~~p~~~~~l~~L~~ 426 (888)
+++|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+.+|+
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~- 476 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT- 476 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC-
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCC-
T ss_conf 8888965898870587537645646213788989689787433555347787898989898379854677604578899-
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 431467313436982324999964999207845568860000366450998638848455899998988-9997556798
Q 002721 427 ALNLSFNHLHGSLPPELGKLDKLVSFDVSNNQLSGTIPSALKGMLSLIEVNFSNNLLTGPVPSFVPFQK-SPNSSFFGNK 505 (888)
Q Consensus 427 ~L~ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~-~~~~~~~~n~ 505 (888)
.|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|++|++++|+++...+.+..+.+ .......+|+
T Consensus 477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCC
T ss_conf 89898885776486561546468989898995787487770688768988898983766687675210217488762898
Q ss_pred CCCCCC
Q ss_conf 887878
Q 002721 506 GLCGEP 511 (888)
Q Consensus 506 ~lc~~~ 511 (888)
..|.++
T Consensus 557 ~~c~c~ 562 (606)
T 3vq2_A 557 VACICE 562 (606)
T ss_dssp CCCSST
T ss_pred CCCCCC
T ss_conf 664776
Done!