Query 002722
Match_columns 888
No_of_seqs 349 out of 3912
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 19:17:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002722.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1436-1440//hhsearch_pdb/002722hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_A DNA mismatch repair pro 1.0 1 1 1265.4 77.6 837 8-862 6-857 (934)
2 1wb9_A DNA mismatch repair pro 1.0 1 1 1219.5 75.7 782 15-860 7-800 (800)
3 3thx_B DNA mismatch repair pro 1.0 1 1 1214.0 68.6 802 13-860 8-881 (918)
4 2o8b_B DNA mismatch repair pro 1.0 1 1 1185.1 70.0 811 15-862 65-991 (1022)
5 1ewq_A DNA mismatch repair pro 1.0 1 1 1154.4 65.7 745 14-858 9-764 (765)
6 3tui_C Methionine import ATP-b 1.0 1 1 152.1 13.9 155 643-807 41-244 (366)
7 3rlf_A Maltose/maltodextrin im 1.0 1 1 151.9 11.1 157 642-808 15-215 (381)
8 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 151.2 14.1 158 642-809 16-221 (359)
9 4g1u_C Hemin import ATP-bindin 1.0 1 1 150.0 11.8 158 641-808 22-229 (266)
10 3tif_A Uncharacterized ABC tra 1.0 1 1 149.8 13.4 156 643-808 18-226 (235)
No 1
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=1265.36 Aligned_cols=837 Identities=45% Similarity=0.784 Sum_probs=745.7
Q ss_pred CCCCCHHHHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCEEECCHHHH
Q ss_conf 854521221033279998429999-983999943860004554499999986433112120489-999873100297789
Q 002722 8 LPELKLDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGT-GSDALSSVSVSKNMF 85 (888)
Q Consensus 8 ~~~~~~~~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~-~~~~~p~~gvp~~~~ 85 (888)
-|+++.|.++.+||++||+++|++ ||||+||++|||||+|++||+++|+++++|++++++.|. +..++|+|++|+|.+
T Consensus 6 ~~~~~~~~~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~ 85 (934)
T 3thx_A 6 KETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNF 85 (934)
T ss_dssp ------CTHHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHH
T ss_conf 55568321124479999986664699969999738744563646999999971300565404778777877564079999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCC-------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 99999998422975899983148-------84006872389975341000024788999968999962433698339999
Q 002722 86 ETIARDLLLERTDHTLELYEGSG-------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLG 158 (888)
Q Consensus 86 ~~yl~~Lv~~~G~~kVai~eQ~e-------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGia 158 (888)
+.|++++++.+| ||||||||.+ ++|+|+|++||||++++||.++.+.+...++||+||.+...+....||+|
T Consensus 86 ~~~l~~~Ll~~g-~rVei~~q~~~~~~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d~~~~~~l~AIk~~~~~~~~~~Gla 164 (934)
T 3thx_A 86 ESFVKDLLLVRQ-YRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSASIGVVGVKMSAVDGQRQVGVG 164 (934)
T ss_dssp HHHHHHHHHTTC-CEEEEEEECC----CCCCCEEEEEEEBTTBCTTCHHHHC--------CCEEEEEECCSSSSCEEEEE
T ss_pred HHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEE
T ss_conf 999999999769-7799982578643467651589998889708888887514654333642799999505888679999
Q ss_pred EEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHH
Q ss_conf 97458863999972492269989999870585479965997798015999997541481222326654550469999998
Q 002722 159 YVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDR 238 (888)
Q Consensus 159 ~~D~stg~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~F~~~~~~~~l~~ 238 (888)
|+|+|||+|.+++|.|++.|+.|.+.|.+++|+|||++.+.. +....++..++..+++.++..+.++|+.+.+.+.+.+
T Consensus 165 ~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~ 243 (934)
T 3thx_A 165 YVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGET-AGDMGKLRQIIQRGGILITERKKADFSTKDIYQDLNR 243 (934)
T ss_dssp EEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCC-CHHHHHHHHHHHHHTCEEEEECGGGGCCSSHHHHHHH
T ss_pred EEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC-CCCHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHH
T ss_conf 999888769999657725899999999867985999607877-5107899999860684478566242687789999999
Q ss_pred HHCCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCC-CCC
Q ss_conf 624888----886554678650888999999999997286789970159942564200148889760042367888-875
Q 002722 239 LVRGSV----EPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDA-NKN 313 (888)
Q Consensus 239 ~~~~~~----~~~~~~~~~~~~a~~al~aLl~Yl~~~~~~~~~~~~~~~~~~~~~~m~iD~~Tl~~LEI~~~~~~~-~~~ 313 (888)
++.... ...+++..+.+++++|+|+|++|++.++...+++.+.+..+..+++|.||++|++||||++|..++ +++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~ 323 (934)
T 3thx_A 244 LLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGS 323 (934)
T ss_dssp HBCCCTTSCCCGGGCGGGGCHHHHHHHHHHHHHHTGGGCGGGTTCBEEEECCGGGBCEECHHHHHHTTSCC---------
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEECHHHHHHCCCCCCCCCCCCCC
T ss_conf 85424544444344443342899999999999999966754335465357767885985788896361264579998777
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH-HHCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 73889862214790689999988307599989899999999998709489999999-85059978999999984145579
Q 002722 314 FSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQ-HLKRISDIERLMHNLEKRRAGLQ 392 (888)
Q Consensus 314 ~SLf~lLn~~t~T~~GkRlLr~WL~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~-~Lk~i~Dlerll~ri~~~~~~~~ 392 (888)
||||++||+ |+|+||+|+||+||++||+|+++|++|||+|++|+++..++..++. .|++++|++|+++|+..++++++
T Consensus 324 ~SL~~~ld~-t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~~~~~~l~~~~L~~i~DleRl~~ri~~~~~~~~ 402 (934)
T 3thx_A 324 QSLAALLNK-CKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQ 402 (934)
T ss_dssp CCHHHHHCC-CSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCHHHHHHHHTTTGGGCCCHHHHHHHHHTTCCCHH
T ss_pred CCHHHHHCC-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
T ss_conf 749998645-7787999999999748688999999999999998509589999999986478789999999962899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999999987999999996211000134667537665311397518999999982146864457864104898976999
Q 002722 393 QIVKLYQSSIRLPYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQLENGEYMISSSYDTGLSA 472 (888)
Q Consensus 393 dl~~l~~~l~~i~~i~~~L~~~~~~~~~~l~~~~l~~l~~~~~~~~l~~l~~~i~~~id~~~~~~~~~~I~~g~d~~Ld~ 472 (888)
|++++++++..++.+...|..........+...++.++.+.. ..+..+.++|+.+||.+...++.++|++|||++||+
T Consensus 403 dl~~l~~~l~~~~~l~~~l~~~~~~~~~~l~~~~~~~l~~~~--~~l~~~~~~i~~~i~~~~~~~g~~~i~~g~~~~Ld~ 480 (934)
T 3thx_A 403 DCYRLYQGINQLPNVIQALEKHEGKHQKLLLAVFVTPLTDLR--SDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE 480 (934)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCCSSSTTGGGGTHHHHHHHH--HHHHHHHHHHHTTBCTTGGGTTCCCBCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHCCCCEECCCCCHHHHH
T ss_conf 999999999999999999985533110678988888999887--659999999999857231424995138998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECHHHHH
Q ss_conf 99999999999999999998323999446225533442259999805883110134675389998731549997756999
Q 002722 473 LKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKK 552 (888)
Q Consensus 473 lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~k~~~~f~t~~l~~ 552 (888)
+|+.++++++++.+++++++++++++..+.+++.|++++||+|+|+++....++.+.+ |+.++++++++||+|+++++
T Consensus 481 lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~--~~~~~t~~~~~rf~t~el~~ 558 (934)
T 3thx_A 481 LREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKN--FSTVDIQKNGVKFTNSKLTS 558 (934)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSS--CEEEEEC--CEEEECTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECHHHCCCCCCC--CEEEECCCCEEEEECHHHHH
T ss_conf 9999999999999999999998489856527999816402899998426544578878--18997135739998989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 99999999999999999999999999974199999999999999999985588722999987784489997418998576
Q 002722 553 LGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSR 632 (888)
Q Consensus 553 L~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~slA~~a~~~~~~~~~P~~~~~~~~~l~i~~~r 632 (888)
|++++.++.+++.+.+.+++.++.+.+..+.+.|..+++++|+|||++|||.+|...+++||||.+.+.+...+.+++||
T Consensus 559 l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~~~~i~i~~~r 638 (934)
T 3thx_A 559 LNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASR 638 (934)
T ss_dssp HHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTTSCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCEEEECCC
T ss_conf 99999999999999999999999999999999999999999999999999999985668984870002787540763675
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHH
Q ss_conf 76065125842004875345799707999915998715798444477866211763346654521799999864980034
Q 002722 633 HPCVEAQDWVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQ 712 (888)
Q Consensus 633 hp~~e~~~~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~ 712 (888)
||+++...+..|||||++|+.+.|++++||||||||||||||++|++++|+|+|+|||+..+.+++++++++++|..|++
T Consensus 639 HP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l 718 (934)
T 3thx_A 639 HACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQ 718 (934)
T ss_dssp CTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC-----
T ss_pred CCHHHHCCCCEEECCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHH
T ss_conf 61244337860653453330379718999888998777999999998998762884344233004999999863816538
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCC
Q ss_conf 20514048999999999983899939998099999994549999999999998539973999906746989853112332
Q 002722 713 LRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEF 792 (888)
Q Consensus 713 ~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~ 792 (888)
..+.|+||++|.+++.|++.+++|+|+|+||||+|||+.+|.++++++++++.+..++++||+||+++++.++++
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~----- 793 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQ----- 793 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC-----
T ss_conf 775766679999999999846399199996998899999999999999999985679999999273799987320-----
Q ss_pred CCCCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2334542768999999974799177867833799999688999998799999999999999997223999
Q 002722 793 NTKQMVGVANYHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFTPS 862 (888)
Q Consensus 793 ~~~~~~~v~~~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~~~~le~~~~~ 862 (888)
.+.+.++||.+..+ .+.+.|+|++.+|++++|||++||+++|+|++||+||++++.+||+....
T Consensus 794 ----~~~v~ng~v~~~~~--~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~~~ 857 (934)
T 3thx_A 794 ----IPTVNNLHVTALTT--EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQYI 857 (934)
T ss_dssp ----CTTEEEEEEEEEEE--TTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTTC-
T ss_pred ----CCEEEEEEEEEEEC--CCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf ----40007669999844--88277888886688898649999998398999999999999999712454
No 2
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=1219.48 Aligned_cols=782 Identities=27% Similarity=0.401 Sum_probs=698.1
Q ss_pred HHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCEEECCHHHHHHHHHHH
Q ss_conf 21033279998429999-983999943860004554499999986433112120489-9998731002977899999999
Q 002722 15 AKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGT-GSDALSSVSVSKNMFETIARDL 92 (888)
Q Consensus 15 ~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~-~~~~~p~~gvp~~~~~~yl~~L 92 (888)
.++.||||+|||++|++ ||||+|||||||||+||+||+++|++|+++ |+.++. ...++||||||+|+++.|+++|
T Consensus 7 ~~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~---lt~r~~~~~~~~pm~GvP~~~~~~yl~~L 83 (800)
T 1wb9_A 7 FDAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDIS---LTKRGASAGEPIPMAGIPYHAVENYLAKL 83 (800)
T ss_dssp GGGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCC---CEEECCSSSCCEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCE---EECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 668997999999978758998999976977998266699999971918---85135678886771688789999999999
Q ss_pred HHHCCCEEEEEEECCC--------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 8422975899983148--------84006872389975341000024788999968999962433698339999974588
Q 002722 93 LLERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTK 164 (888)
Q Consensus 93 v~~~G~~kVai~eQ~e--------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGia~~D~st 164 (888)
| .+| ||||||||+| ++|+|+|++||||++ ++.++ +..++|||+||.+. ...+|+||+|+||
T Consensus 84 v-~~G-~kVai~eQ~e~~~~~k~~v~R~v~~v~TpGT~~--~~~~l---~~~~~n~l~ai~~~----~~~~Gla~~D~st 152 (800)
T 1wb9_A 84 V-NQG-ESVAICEQIGDPATSKGPVERKVVRIVTPGTIS--DEALL---QERQDNLLAAIWQD----SKGFGYATLDISS 152 (800)
T ss_dssp H-HTT-CCEEEEEECSCGGGCSSSCCEEEEEEECTTTCC--CGGGS---CTTSCCCEEEEEEC----SSCEEEEEECTTT
T ss_pred H-HCC-CEEEEEECCCCCCCCCCCCEEEEEEEECCCCCC--CCCCC---CCCCCCEEEEEEEC----CCEEEEEEEECCC
T ss_conf 9-779-859999805883114785248899986697221--44445---67777389999986----9889999999877
Q ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 63999972492269989999870585479965997798015999997541481222326654550469999998624888
Q 002722 165 RVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSV 244 (888)
Q Consensus 165 g~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~F~~~~~~~~l~~~~~~~~ 244 (888)
|+|++++|.| ++.|.+.|.+++|+|||++.+... . . +......++..+.+.|+...+.+.+.++++. .
T Consensus 153 g~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~-~---~----l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~-~ 220 (800)
T 1wb9_A 153 GRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAE-M---S----LIEGRRGLRRRPLWEFEIDTARQQLNLQFGT-R 220 (800)
T ss_dssp CCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCC-G---G----GTTTCSSEEEECGGGGCHHHHHHHHHHHHTC-S
T ss_pred CEEEEEEECC---HHHHHHHHHHCCCEEEEECCCCCH-H---H----HHHCCCCEEECCCCCCCHHHHHHHHHHHHCC-C
T ss_conf 7799998168---999999997359839997488776-8---8----8520561488661016855799999988483-4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 88655467865088899999999999728678997015994256420014888976004236788887573889862214
Q 002722 245 EPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTC 324 (888)
Q Consensus 245 ~~~~~~~~~~~~a~~al~aLl~Yl~~~~~~~~~~~~~~~~~~~~~~m~iD~~Tl~~LEI~~~~~~~~~~~SLf~lLn~~t 324 (888)
++.+++..+.+.+++|+|+|+.|++.++.....+...+..+..+++|.||.+|+++|||+.+.+++ ++||||+++|+ |
T Consensus 221 ~l~~~~~~~~~~~~~a~gall~Yl~~~~~~~~~~~~~~~~~~~~~~m~ld~~t~~~LEl~~~~~~~-~~gSL~~ll~~-t 298 (800)
T 1wb9_A 221 DLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGG-AENTLASVLDC-T 298 (800)
T ss_dssp CSGGGTCTTCHHHHHHHHHHHHHHHHHHCSCCTTCCCCEECCGGGBCEECHHHHHHTTSSSCTTSC-STTSHHHHHCC-C
T ss_pred CHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCEEEECHHHHHHCCCCCCCCCC-CCCCHHHHHCC-C
T ss_conf 322204357489999999999999995232014635437974477798668999854685247899-64659998688-9
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 79068999998830759998989999999999870948999999985059978999999984145579999999999879
Q 002722 325 TAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRL 404 (888)
Q Consensus 325 ~T~~GkRlLr~WL~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~Lk~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~i 404 (888)
+|+||+|+||+||++|++|+++|++|||+|++|++ ++..++..|++++|++|+++|+..++++++|+..+++++..+
T Consensus 299 ~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~---~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~ 375 (800)
T 1wb9_A 299 VTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD---FTAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQL 375 (800)
T ss_dssp SSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG---GHHHHHHHHHTTCSHHHHHHHHHHTCCCHHHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 69799999998725889999999999999999999---999778875278658999999972998999999999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999962110001346675376653113975189999999821468644--578641048989769999999999999
Q 002722 405 PYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL--ENGEYMISSSYDTGLSALKNEQESLER 482 (888)
Q Consensus 405 ~~i~~~L~~~~~~~~~~l~~~~l~~l~~~~~~~~l~~l~~~i~~~id~~~~--~~~~~~I~~g~d~~Ld~lr~~~~~~~~ 482 (888)
+.+...+.... ...+..+...+ +.+..+.+.|+++||.+++ ..+++.|++|+|++||++|+.+.+.++
T Consensus 376 ~~l~~~l~~~~--------~~~L~~l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~I~~g~~~eLd~lr~~~~~~~~ 445 (800)
T 1wb9_A 376 PELRAQLETVD--------SAPVQALREKM--GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATD 445 (800)
T ss_dssp HHHHHHHHSCC--------CHHHHHHHHHH--CCCHHHHHHHHHHBCSSCCSCSTTCCCBCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--------CHHHHHHHHHC--CCHHHHHHHHHHHHCCCCHHHHHCCCEECCCCCHHHHHHHHHHHHHHH
T ss_conf 99999987368--------68999999736--028999999999867475445413884678978899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHH
Q ss_conf 99999999983239994462255334422599998058831101346753899987315499977569999999999999
Q 002722 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLE 562 (888)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~l~l~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~k~~~~f~t~~l~~L~~~~~~~~~ 562 (888)
++.++..++++.++++ .+++.|+++.||+|+|++.....+| .. |+..+++++..||+|++++++++++.++.+
T Consensus 446 ~l~~~~~~~~~~~~~~---~l~i~~~~~~gy~i~V~~~~~~~vp--~~--~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~ 518 (800)
T 1wb9_A 446 YLERLEVRERERTGLD---TLKVGFNAVHGYYIQISRGQSHLAP--IN--YMRRQTLKNAERYIIPELKEYEDKVLTSKG 518 (800)
T ss_dssp HHHHHHHHHHHHHTCT---TCEEEEETTTEEEEEEEHHHHTTSC--TT--CEEEEECSSEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---CEEEEECCCCEEEEEEECCCCCCCC--CC--EEEEEECCCCCEEECHHHHHHHHHHHHHHH
T ss_conf 9999999999983998---1478764731399998432001388--51--278640268878847899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCC
Q ss_conf 99999999999999999741999999999999999999855887229999877844899974189985767606512584
Q 002722 563 EYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWV 642 (888)
Q Consensus 563 ~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~slA~~a~~~~~~~~~P~~~~~~~~~l~i~~~rhp~~e~~~~~ 642 (888)
++..++.+++.++.+.+..+.+.|..+.+.+|+|||++|+|.+|.. ++||||++++++ .+.+++||||+++...+.
T Consensus 519 ~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~--~~~~~P~~~~~~--~i~i~~~rHP~le~~~~~ 594 (800)
T 1wb9_A 519 KALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYT--LNYTCPTFIDKP--GIRITEGRHPVVEQVLNE 594 (800)
T ss_dssp HHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCCEECSSS--CEEEEEECCTTHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCEECCCC--CEEEEECCCCEEECCCCC
T ss_conf 9999999999999999988899999999999999999999999986--898364777998--789995416378724798
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHH
Q ss_conf 20048753457997079999159987157984444778662117633466545217999998649800342051404899
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e 722 (888)
.+|+||++++ +.|++++|+||||||||||||+++++.+++|+|++||+..+.+++++++|++++..|++..+.|+|+.+
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e 673 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVE 673 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHH
T ss_pred CEEEECCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 3651023126-788589999999987689999999889887518642132045421999876588788887426555688
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99999999838999399980999999945499999999999985399739999067469898531123322334542768
Q 002722 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVAN 802 (888)
Q Consensus 723 ~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~ 802 (888)
|.+++.++..+++|+|+|+||||+|||+.++.++++++++++.+..+++++|+||+++++.++++ .+.+.+
T Consensus 674 ~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~---------~~~v~n 744 (800)
T 1wb9_A 674 MTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK---------MEGVAN 744 (800)
T ss_dssp HHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH---------STTEEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH---------HHCEEE
T ss_conf 99999999845699789997998789866799999999999986239868998378899987443---------202377
Q ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999747991778678337999996889999987999999999999999972239
Q 002722 803 YHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (888)
Q Consensus 803 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~~~~le~~~ 860 (888)
+||.+..+ ++.++|+|++.+|++++|||++||+++|+|++||+||++++.+||+.+
T Consensus 745 ~~~~~~~~--~~~l~~~ykl~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~~~ 800 (800)
T 1wb9_A 745 VHLDALEH--GDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS 800 (800)
T ss_dssp EEEEEEEE--TTEEEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEEEC--CCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 89999972--891789879987899985899999981989999999999999876119
No 3
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=1214.00 Aligned_cols=802 Identities=22% Similarity=0.333 Sum_probs=662.7
Q ss_pred HHHHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 1221033279998429999-983999943860004554499999986433112120489999873100297789999999
Q 002722 13 LDAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARD 91 (888)
Q Consensus 13 ~~~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~ 91 (888)
-.+++.||||+|||++|++ ||+|||||||||||+|||||+++|++|+++ ++.++ ++||||||+|+++.|+++
T Consensus 8 ~~~~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~---lt~~~----~~pmaGvP~ha~~~yl~r 80 (918)
T 3thx_B 8 RSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIY---CHLDH----NFMTASIPTHRLFVHVRR 80 (918)
T ss_dssp --CTTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCC---CEEET----TEEEEEEEGGGHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCE---EECCC----CEEEEECCHHHHHHHHHH
T ss_conf 88889998999999999878995999984877665075699999972906---40579----712772337678999999
Q ss_pred HHHHCCCEEEEEEECCC--------------CCCEEEEECCCCCCCCCCCCC---------------CCCCCCCCCCEEE
Q ss_conf 98422975899983148--------------840068723899753410000---------------2478899996899
Q 002722 92 LLLERTDHTLELYEGSG--------------SNWRLVKSGTPGNLGSYEDVL---------------FANNEMQDTPVIV 142 (888)
Q Consensus 92 Lv~~~G~~kVai~eQ~e--------------~~R~v~rviTPGt~~~~ed~l---------------~~~~~~~~~~yl~ 142 (888)
|| ++| ||||||||+| ++|+|+||+||||+++ +.+ + +..+||||+
T Consensus 81 Lv-~~G-~kVai~eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~d--~~~~~~~~~~~~~~~~~~l---~~~~~nyL~ 153 (918)
T 3thx_B 81 LV-AKG-YKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIG--EDVNPLIKLDDAVNVDEIM---TDTSTSYLL 153 (918)
T ss_dssp HH-HHT-CCEEEEEECSCHHHHTTSTTCSSCCCEEEEEEECTTCCCS--TTTCCEEEC--CEEECCCS---CTTSCCCEE
T ss_pred HH-HCC-CCEEEEECCCCHHHHHCCCCCCCCEEEEEEEEECCCCCCC--CCCCCCCCCCCCCCCCCCC---CCCCCCEEE
T ss_conf 99-769-9589995257766651124567855666889977873116--3101211233322211246---788876799
Q ss_pred EEEECCCC------CCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH--
Q ss_conf 99624336------9833999997458863999972492269989999870585479965997798015999997541--
Q 002722 143 ALFPNFRE------NGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR-- 214 (888)
Q Consensus 143 aI~~~~~~------~~~~iGia~~D~stg~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~~~~~~~~~l~~~l~~-- 214 (888)
||.+.... ....||+||+|+|||+|.+++|.|+..++.|.+.|.+++|+|||++.+. .....++.+.+..
T Consensus 154 ai~~~~~~~~~~~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~~--~~~~~~~~~~~~~~~ 231 (918)
T 3thx_B 154 CISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSAL--SEQTEALIHRATSVS 231 (918)
T ss_dssp EEEEEC---------CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESSC--CHHHHHHHHHHHHSS
T ss_pred EEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHCCC
T ss_conf 999645555454556865999999866773899994484059999999985698699956875--557899998630000
Q ss_pred ---CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHHCCCCC-CCCCEEE
Q ss_conf ---48122232665455046999999862488888655467-------865088899999999999728678-9970159
Q 002722 215 ---CGVMLTERKKTEFKTRDLVQDLDRLVRGSVEPVRDLVS-------GFEIAPGALGALLSYAELLSDESN-YGNYYIR 283 (888)
Q Consensus 215 ---~~~~~~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~a~~al~aLl~Yl~~~~~~~~-~~~~~~~ 283 (888)
....++..+.+.|+...+.+.+.+++.. ..+.+++.. ....+++|+|++++|++.++.... .+...+.
T Consensus 232 ~~~~~~~~~~~~~~~f~~~~a~~~l~~~f~~-~~l~~~g~~~~~~~~~~~~~~~~A~gall~Yl~~~~~~~~l~~~~~~~ 310 (918)
T 3thx_B 232 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAK-DTVDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFK 310 (918)
T ss_dssp CSSSCCEEEEECGGGTSHHHHHHHHHHHCC---------------CCCCCHHHHHHHHHHHHHHHHTTCGGGGSCGGGEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 1466315785451115756799999998385-642112403454330143899999999999999964112323443321
Q ss_pred EE-CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HCH
Q ss_conf 94-2564200148889760042367888875738898622147906899999883075999898999999999987-094
Q 002722 284 KY-SLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFV-DDT 361 (888)
Q Consensus 284 ~~-~~~~~m~iD~~Tl~~LEI~~~~~~~~~~~SLf~lLn~~t~T~~GkRlLr~WL~~Pl~d~~~I~~Rld~Ve~l~-~~~ 361 (888)
.+ ..+++|.||++|++||||++|.++++++||||++||+ |+||||+||||+||++||+|+++|++|||+|++|+ ++.
T Consensus 311 ~~~~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~-t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~~~ 389 (918)
T 3thx_B 311 QLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDH-TKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSES 389 (918)
T ss_dssp ESCCTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCC-CSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCCC
T ss_pred EECCCCCEEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 5327788799878999743776368999888769999842-779689999999875827899999999999999984795
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 89999999850599789999999841455799999999998799-99999962110001346675376653113975189
Q 002722 362 ALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRLP-YIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLN 440 (888)
Q Consensus 362 ~l~~~l~~~Lk~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~i~-~i~~~L~~~~~~~~~~l~~~~l~~l~~~~~~~~l~ 440 (888)
.++..++..|++++|+||+++|+..++++++|+..+.+++..++ .+...+..........+...+...+.... ..+.
T Consensus 390 ~~~~~l~~~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~~l~~~l~~~~~~~~~~lL~~~~~~~~~~~--~~~~ 467 (918)
T 3thx_B 390 SVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELL--SPVE 467 (918)
T ss_dssp THHHHHHHTTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHTHHHHHT--GGGH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHH
T ss_conf 78999999872686577888876037688899999999999999999999887652025789999997555667--8999
Q ss_pred HHHHHHHHHCCCCCCCC--CCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEE--EEE
Q ss_conf 99999982146864457--86410489-89769999999999999999999999832399944622553344225--999
Q 002722 441 KFIALVETSVDLDQLEN--GEYMISSS-YDTGLSALKNEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFG--HVF 515 (888)
Q Consensus 441 ~l~~~i~~~id~~~~~~--~~~~I~~g-~d~~Ld~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~g--y~i 515 (888)
.+.+ .++.+.... .+..+... ..+.|+.+++.+.+..+.+.+.+.+++..++. +++.|+...| |+|
T Consensus 468 ~~~~----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~i~~-----~~~~~~~~~g~~y~i 538 (918)
T 3thx_B 468 HYLK----ILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKN-----PSAQYVTVSGQEFMI 538 (918)
T ss_dssp HHHT----TSCHHHHHHTCSTTSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----TTCCCEEETTEEEEE
T ss_pred HHHH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCEEEEECCCEEEE
T ss_conf 9999----9877664427742000243227779999999999999999999999987475-----664368512878999
Q ss_pred EEECCCCCCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98058831101346753899987315499977569999999999999999999999999999997419999999999999
Q 002722 516 RITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSE 595 (888)
Q Consensus 516 ~v~~~~~~~~~~~~~~~~~~~~~~k~~~~f~t~~l~~L~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~ 595 (888)
+|++.....+| . .|+.+|++++++||+|++++++++++..+.+++...+.+++.++...+.++.+.|..+++++|+
T Consensus 539 ev~~~~~~~vp--~--~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~la~ 614 (918)
T 3thx_B 539 EIKNSAVSCIP--T--DWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLAT 614 (918)
T ss_dssp EEETTSGGGSC--S--SCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHH
T ss_pred EECHHHHHHCC--C--EEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97378770199--8--4899983477259977899999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECC--CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHH
Q ss_conf 999998558872299998778448999741899857676065125--842004875345799707999915998715798
Q 002722 596 LDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQD--WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFI 673 (888)
Q Consensus 596 LD~l~slA~~a~~~~~~~~~P~~~~~~~~~l~i~~~rhp~~e~~~--~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTll 673 (888)
|||++|||.+|.. .+||||++++++ .+.|++||||+++... +..+||||++|+.+.|++++|||||||||||||
T Consensus 615 lD~l~s~A~~a~~--~~~~~P~~~~~~--~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlL 690 (918)
T 3thx_B 615 VDCIFSLAKVAKQ--GDYCRPTVQEER--KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYI 690 (918)
T ss_dssp HHHHHHHHHHHTS--SSCBCCEEESSC--EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCCCCCCCCCC--CEEEEECCCHHHHHHHCCCCCEECCCCCCCCCCCEEEEEECCCCCCHHHHH
T ss_conf 9999999999734--897477546888--479972565212223136895661566234788708999899987658999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf 44447786621176334665452179999986498003420514048999999999983899939998099999994549
Q 002722 674 RQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDG 753 (888)
Q Consensus 674 r~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~ 753 (888)
|+++++++++|+|+|+|+..+.+++++++++++|..|++..+.|+|+++|.+++.|++.+++|+|+|+||||+|||+.++
T Consensus 691 r~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~ 770 (918)
T 3thx_B 691 KQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDG 770 (918)
T ss_dssp HHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH
T ss_conf 99988788862476345211122599999986785889998687765899999999986669978999689889998999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCC-EEEEEEEEEEECC------------CCCEEEEE
Q ss_conf 9999999999985399739999067469898531123322334542-7689999999747------------99177867
Q 002722 754 FGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVG-VANYHVSAHIDST------------SRKLTMLY 820 (888)
Q Consensus 754 ~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~------------~~~~~~~y 820 (888)
.++++++++++.+..|+++||+||+++++.+++. ++. +.|+||.+.++++ ++.++|+|
T Consensus 771 ~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~---------~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~l~fly 841 (918)
T 3thx_B 771 IAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN---------YSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLY 841 (918)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH---------TTTTEEEEEEEEECC-----------------CCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---------CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 9999999999998249869999476899999862---------5144678999999715643334443457888345863
Q ss_pred EECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8337999996889999987999999999999999972239
Q 002722 821 KVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELEDFT 860 (888)
Q Consensus 821 ~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~~~~le~~~ 860 (888)
++.+|++++|||++||++||+|++||+||++++.+||...
T Consensus 842 kl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~~ 881 (918)
T 3thx_B 842 QITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLI 881 (918)
T ss_dssp EEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5622899874899999982969999999999999999999
No 4
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=1185.11 Aligned_cols=811 Identities=24% Similarity=0.339 Sum_probs=657.3
Q ss_pred HHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 21033279998429999-98399994386000455449999998643311212048999987310029778999999998
Q 002722 15 AKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDLL 93 (888)
Q Consensus 15 ~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~Lv 93 (888)
.++.||||+|||++|++ ||||||||||||||+||+||+++|++|+++ |+. + ++||||||+|+++.|+++||
T Consensus 65 ~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~a~~L~i~---lt~-~----~~pmaGvP~ha~~~yl~~Lv 136 (1022)
T 2o8b_B 65 LNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLV---FMK-G----NWAHSGFPEIAFGRYSDSLV 136 (1022)
T ss_dssp HTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHCCC---CCS-S----SSCEEEEEGGGHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHCCEE---EEC-C----CCCCCCCCHHHHHHHHHHHH
T ss_conf 001898999999978758998999977977998441599999850948---722-8----87778985607999999999
Q ss_pred HHCCCEEEEEEECCC---------------------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC--
Q ss_conf 422975899983148---------------------840068723899753410000247889999689999624336--
Q 002722 94 LERTDHTLELYEGSG---------------------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRE-- 150 (888)
Q Consensus 94 ~~~G~~kVai~eQ~e---------------------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~-- 150 (888)
.+| ||||||||+| ++|+|+||+||||+++ +.+....+..++|||+||.+...+
T Consensus 137 -~~G-ykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~~d--~~~~~~l~~~~~n~l~ai~~~~~~~~ 212 (1022)
T 2o8b_B 137 -QKG-YKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTY--SVLEGDPSENYSKYLLSLKEKEEDSS 212 (1022)
T ss_dssp -HTT-CCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSCCC--CTTSCCCSCSSCCEEEEEEEEECSCC
T ss_pred -HCC-CEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEEEC--CCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf -879-96999948898035445443203555568853651799988986665--43234446777868999998235666
Q ss_pred -CCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHH-CCCEEEE--CCCCC
Q ss_conf -9833999997458863999972492269989999870585479965997798015999997541-4812223--26654
Q 002722 151 -NGCTIGLGYVDLTKRVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTR-CGVMLTE--RKKTE 226 (888)
Q Consensus 151 -~~~~iGia~~D~stg~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~~~~~~~~~l~~~l~~-~~~~~~~--~~~~~ 226 (888)
....||+||+|+|||+|+++||.|+..++.|.+.|.+++|+|||++.+.. +....+ .+.. ....+.. .+...
T Consensus 213 ~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~P~Eil~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~ 288 (1022)
T 2o8b_B 213 GHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQVLFEKGNL-SKETKT---ILKSSLSCSLQEGLIPGSQ 288 (1022)
T ss_dssp -CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSCEEEEEEETTTC-CHHHHH---HHTTTTTTSEEEEECBTTT
T ss_pred CCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCC-CHHHHH---HHHHHHHHHHHHHCCCCHH
T ss_conf 777679999999877879999942841799999999842984899557766-667889---8875311444530366301
Q ss_pred CCC-HHHHHHHH--HHHCCCC-----------------CCCCCCC---CCCCCHHHHHHHHHHHHHHHCCC------CCC
Q ss_conf 550-46999999--8624888-----------------8865546---78650888999999999997286------789
Q 002722 227 FKT-RDLVQDLD--RLVRGSV-----------------EPVRDLV---SGFEIAPGALGALLSYAELLSDE------SNY 277 (888)
Q Consensus 227 F~~-~~~~~~l~--~~~~~~~-----------------~~~~~~~---~~~~~a~~al~aLl~Yl~~~~~~------~~~ 277 (888)
|+. ......+. .+|.... ....++. ...+++++|+|+|++|++.++.. ..+
T Consensus 289 ~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~ 368 (1022)
T 2o8b_B 289 FWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLIDQELLSMANF 368 (1022)
T ss_dssp BCCHHHHHHHHHHTTTTSSSSCCCC-CCCCHHHHHTEECCSTTCSEECGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCE
T ss_pred HCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 10056677654355430442221110235899987410122116654325389999999999999996721222113554
Q ss_pred CCCE-------------EEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCH
Q ss_conf 9701-------------599425642001488897600423678888757388986221479068999998830759998
Q 002722 278 GNYY-------------IRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDV 344 (888)
Q Consensus 278 ~~~~-------------~~~~~~~~~m~iD~~Tl~~LEI~~~~~~~~~~~SLf~lLn~~t~T~~GkRlLr~WL~~Pl~d~ 344 (888)
..+. +.++..+++|.||++|++||||++|.++++++||||++||+ |+|+||+||||+||++||+|+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nLEl~~~~~~g~~~gSLl~~Ld~-t~T~mG~RLLr~WL~~PL~d~ 447 (1022)
T 2o8b_B 369 EEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDT-CHTPFGKRLLKQWLCAPLCNH 447 (1022)
T ss_dssp EECCCGGGGTCC---------CCCCBCBCCHHHHHHTTCSSCCSSSSCCCSHHHHHCC-CSSHHHHHHHHHHHHSCBCCH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCCCCCCCCHHHHHCC-CCCCHHHHHHHHHHHCCCCCH
T ss_conf 4205642012222222211147788598388999862477457899988808987175-789564899999985746799
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHH-CCC-------------------CH---HHHHHHHHHH
Q ss_conf 989999999999870948999999985059978999999984-145-------------------57---9999999999
Q 002722 345 NEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEK-RRA-------------------GL---QQIVKLYQSS 401 (888)
Q Consensus 345 ~~I~~Rld~Ve~l~~~~~l~~~l~~~Lk~i~Dlerll~ri~~-~~~-------------------~~---~dl~~l~~~l 401 (888)
++|++|||+|++|++++.++..++..|+++||+||+++|+.. +++ ++ +|+..+.+++
T Consensus 448 ~~I~~RldaVe~l~~~~~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l 527 (1022)
T 2o8b_B 448 YAINDRLDAIEDLMVVPDKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 527 (1022)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999998395899999999704866899999997427754333452023333333111544499999999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCHHHHHHH
Q ss_conf 879999999962110001346675376653113------9751899999998214686445786-410489897699999
Q 002722 402 IRLPYIRSALQQYEGQFSSLIKERYLDPLESLT------DDDHLNKFIALVETSVDLDQLENGE-YMISSSYDTGLSALK 474 (888)
Q Consensus 402 ~~i~~i~~~L~~~~~~~~~~l~~~~l~~l~~~~------~~~~l~~l~~~i~~~id~~~~~~~~-~~I~~g~d~~Ld~lr 474 (888)
..++.+...+......... ..+..+.... ..+.+.++...++.+||.+...+++ +.+++|||++||++|
T Consensus 528 ~~~~~i~~~l~~~~~~~~s----~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~g~i~~~~g~~~~ld~~r 603 (1022)
T 2o8b_B 528 KVMCKIIGIMEEVADGFKS----KILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQAL 603 (1022)
T ss_dssp HHHHHHHHHHHHHHTTCCC----HHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHSCCCCCTTCC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC----HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCEEECCCCCHHHHHHH
T ss_conf 9999999999864302576----999999974302444450779999999998728043411896744799998899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCC-CCCCCCCCEEEEEEECCEEEEECHHHHHH
Q ss_conf 99999999999999999832399944622553344225999980588311-01346753899987315499977569999
Q 002722 475 NEQESLERQIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPK-IRKKLTTQFIVLETRKDGVKFTNTKLKKL 553 (888)
Q Consensus 475 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~~~~~gy~i~v~~~~~~~-~~~~~~~~~~~~~~~k~~~~f~t~~l~~L 553 (888)
+.+.+.++++.+++.++++.++++ ++++......+|+|+|+...... ++ . .|+..+++++..||+|+++.++
T Consensus 604 ~~~~~~~~~l~~~~~~~~~~~~~~---~l~~~~~~~~~y~i~v~~~~~~~~vp--~--~~~~~~t~~~~~rf~t~el~~~ 676 (1022)
T 2o8b_B 604 ADIRENEQSLLEYLEKQRNRIGCR---TIVYWGIGRNRYQLEIPENFTTRNLP--E--EYELKSTKKGCKRYWTKTIEKK 676 (1022)
T ss_dssp HHHHHHHHHHHHHHTSSGGGSSCS---CCEEECCGGGCCEEEECTTTTSSCCC--C---CEEEEETTEEEECCTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC---CEEEEEECCCEEEEEEEHHHHCCCCC--C--CEEEEEECCCCCEEECHHHHHH
T ss_conf 999999999999999999984998---63578742766999974455215589--7--3488651368507961578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCEEEECC
Q ss_conf 99999999999999999999999999741999999999999999999855887229999877844899--9741899857
Q 002722 554 GDQYQKVLEEYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPP--DVGDIILEGS 631 (888)
Q Consensus 554 ~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~slA~~a~~~~~~~~~P~~~~~--~~~~l~i~~~ 631 (888)
+.++..+++++...+.+++.++.+.+.++.+.|..+.+++|+|||++|+|.+|.....+||||++.+. +...+.+++|
T Consensus 677 ~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~ 756 (1022)
T 2o8b_B 677 LANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGS 756 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 99999999999999999999999999999999999999999999999579998643678517754567799863999926
Q ss_pred CCCEEEECC-CCCCCCCCCCCCCCC-------CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 676065125-842004875345799-------707999915998715798444477866211763346654521799999
Q 002722 632 RHPCVEAQD-WVNFIPNDCKLIRGK-------SWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIF 703 (888)
Q Consensus 632 rhp~~e~~~-~~~~v~n~~~~~~~~-------~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~ 703 (888)
|||+++... +..+||||++|+... |++++||||||||||||||++|++.+++|+|+|||+..+.++++|.|+
T Consensus 757 rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~ 836 (1022)
T 2o8b_B 757 RHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVF 836 (1022)
T ss_dssp CCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEE
T ss_pred CCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHH
T ss_conf 25579999558955754455335544455778848999889999868999999889998662688526767797999999
Q ss_pred HHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 86498003420514048999999999983899939998099999994549999999999998539973999906746989
Q 002722 704 ARVGAGDCQLRGVSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTA 783 (888)
Q Consensus 704 ~~~~~~d~~~~~~s~f~~e~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~ 783 (888)
+++|..|++..+.|+|++||.+++.|+..+++|+|+|+||||+|||+.+|.++++++++++.+..++++||+||+++++.
T Consensus 837 ~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 837 TRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp EECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred HHCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 97697788861543328999999999974889968999799888986789999999999998647998999969899999
Q ss_pred HHHHCCCCCCCCCCCCEEEEEEEEEEEC-----CCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8531123322334542768999999974-----79917786783379999968899999879999999999999999722
Q 002722 784 LAHENANEFNTKQMVGVANYHVSAHIDS-----TSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858 (888)
Q Consensus 784 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~y~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~~~~le~ 858 (888)
.... .+.+.++||.+..+. ..+.+.|+|++.+|++++|||++||++||+|++||+||++++.+||.
T Consensus 917 ~~~d---------~~~v~~g~~~~~~~~~~~~~~~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~ 987 (1022)
T 2o8b_B 917 DYSQ---------NVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEK 987 (1022)
T ss_dssp HTSS---------CSSEEEEEEEEC-------------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHCC---------CCEEECCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 8578---------5431527699997057233787735888532479999879999999809799999999999999997
Q ss_pred CCCC
Q ss_conf 3999
Q 002722 859 FTPS 862 (888)
Q Consensus 859 ~~~~ 862 (888)
....
T Consensus 988 ~~~~ 991 (1022)
T 2o8b_B 988 MNQS 991 (1022)
T ss_dssp STTS
T ss_pred HHHH
T ss_conf 8888
No 5
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=1154.40 Aligned_cols=745 Identities=31% Similarity=0.434 Sum_probs=657.2
Q ss_pred HHHCCCCHHHHHHCCCCC-CCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHH
Q ss_conf 221033279998429999-9839999438600045544999999864331121204899998731002977899999999
Q 002722 14 DAKQARGFLSFYKTLPND-TRAVRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGTGSDALSSVSVSKNMFETIARDL 92 (888)
Q Consensus 14 ~~~~~~~~~~qy~~lk~~-~d~il~f~~G~fYe~f~~DA~~~~~~l~~~~~~l~~~~~~~~~~p~~gvp~~~~~~yl~~L 92 (888)
...+.||||+|||++|++ ||+|||||||||||+||+||+.+|++|+++ |+.+.+...++||||||+|+++.|+++|
T Consensus 9 ~~~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~---lt~r~~~~~~~pm~GvP~~~~~~y~~~L 85 (765)
T 1ewq_A 9 GPGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV---LTHKTSKDFTTPMAGIPLRAFEAYAERL 85 (765)
T ss_dssp CCSCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCC---CEEEECSSCEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHHCCE---EECCCCCCCCCCEECCCHHHHHHHHHHH
T ss_conf 8899984999999999878997999964861577177899999970958---8356788997725258388999999999
Q ss_pred HHHCCCEEEEEEECCC--------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCC
Q ss_conf 8422975899983148--------84006872389975341000024788999968999962433698339999974588
Q 002722 93 LLERTDHTLELYEGSG--------SNWRLVKSGTPGNLGSYEDVLFANNEMQDTPVIVALFPNFRENGCTIGLGYVDLTK 164 (888)
Q Consensus 93 v~~~G~~kVai~eQ~e--------~~R~v~rviTPGt~~~~ed~l~~~~~~~~~~yl~aI~~~~~~~~~~iGia~~D~st 164 (888)
| .+| ||||||||+| ++|+|+|++||||++ ++.++ ..++|||+||+ . ...+|+||+|+||
T Consensus 86 v-~~G-~kVai~eQ~e~~~~~kg~v~R~v~~v~TpGT~~--~~~~l----~~~~n~l~ai~-~----~~~~Gla~~D~st 152 (765)
T 1ewq_A 86 L-KMG-FRLAVADQVEPAEEAEGLVRREVTQLLTPGTLL--QESLL----PREANYLAAIA-T----GDGWGLAFLDVST 152 (765)
T ss_dssp H-HTT-CCEEEEEECSCGGGCSSSCCEEEEEEECGGGCC--CGGGS----CSSCCCEEEEE-E----SSSEEEEEEETTT
T ss_pred H-HCC-CEEEEEECCCCCCCCCCCEEEEEEEEECCCEEC--CHHHC----CCCCCEEEEEE-E----CCEEEEEEEECCC
T ss_conf 9-779-879999468885334674168999997575003--53223----77786899999-5----8989999999877
Q ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 63999972492269989999870585479965997798015999997541481222326654550469999998624888
Q 002722 165 RVLGLAEFLDDSHFTNVESALVALGCKECLLPTEAVKSSECKTLRDALTRCGVMLTERKKTEFKTRDLVQDLDRLVRGSV 244 (888)
Q Consensus 165 g~~~i~ef~D~~~~~~L~t~L~~~~P~EIii~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~F~~~~~~~~l~~~~~~~~ 244 (888)
|+|.+++|.|+ +.|.+.|.+++|+|||++.+. ..+.. .++..+.| |+. +.+.++++..
T Consensus 153 g~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~------~~~~~-------~~~~~~~~-f~~----~~l~~~~~~~- 210 (765)
T 1ewq_A 153 GEFKGTVLKSK---SALYDELFRHRPAEVLLAPEL------LENGA-------FLDEFRKR-FPV----MLSEAPFEPE- 210 (765)
T ss_dssp TEEEEEEESSH---HHHHHHHHHHCCSEEEECHHH------HHCHH-------HHHHHHHH-CCS----EEECCCCCCC-
T ss_pred CEEEEEEECCH---HHHHHHHHHCCCEEEEECCCH------HHHHH-------HHHHCCCC-CCH----HHHHHHHCCC-
T ss_conf 77999983588---999999972698099966873------77777-------76515000-688----9999884604-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 88655467865088899999999999728678997015994256420014888976004236788887573889862214
Q 002722 245 EPVRDLVSGFEIAPGALGALLSYAELLSDESNYGNYYIRKYSLDSYMRLDSAAMRALNVLESKTDANKNFSLFGLMNRTC 324 (888)
Q Consensus 245 ~~~~~~~~~~~~a~~al~aLl~Yl~~~~~~~~~~~~~~~~~~~~~~m~iD~~Tl~~LEI~~~~~~~~~~~SLf~lLn~~t 324 (888)
+... +.+++|+|+|++|++.++..... ...+..+..+++|.||.+|+++|||+.+.++ +||||+++|+ |
T Consensus 211 -----~~~~-~~~~~a~g~ll~Yl~~~~~~~~~-~~~~~~~~~~~~m~lD~~t~~~LEl~~~~~~---~gsL~~~ld~-t 279 (765)
T 1ewq_A 211 -----GEGP-LALRRARGALLAYAQRTQGGALS-LQPFRFYDPGAFMRLPEATLRALEVFEPLRG---QDTLFSVLDE-T 279 (765)
T ss_dssp -----SSSC-HHHHHHHHHHHHHHHHHHTSCCC-CCCCEECCGGGSCBCCHHHHHHTTSSSCSSS---CCCHHHHHCC-C
T ss_pred -----CCCC-HHHHHHHHHHHHHHHHHHHCCCC-CCCCEEECCCCEEEECHHHHHHCCCCCCCCC---CCHHHHHHCC-C
T ss_conf -----4587-79999999999999996022125-5786897778869966899973758547896---1169998688-8
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 79068999998830759998989999999999870948999999985059978999999984145579999999999879
Q 002722 325 TAGMGKRLLHMWLKQPLLDVNEINARLDIVQAFVDDTALRQDLRQHLKRISDIERLMHNLEKRRAGLQQIVKLYQSSIRL 404 (888)
Q Consensus 325 ~T~~GkRlLr~WL~~Pl~d~~~I~~Rld~Ve~l~~~~~l~~~l~~~Lk~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~i 404 (888)
+|+||+|+|++||++|++|.++|++|||+|++|.++..++..++..|++++|++|++.|+..++++++|+..+++++..+
T Consensus 280 ~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~~~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~ 359 (765)
T 1ewq_A 280 RTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREGALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQIL 359 (765)
T ss_dssp SSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 79799999999765747899999999999999973989999889987357788999999972899889999999999999
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999962110001346675376653113975189999999821468644--578641048989769999999999999
Q 002722 405 PYIRSALQQYEGQFSSLIKERYLDPLESLTDDDHLNKFIALVETSVDLDQL--ENGEYMISSSYDTGLSALKNEQESLER 482 (888)
Q Consensus 405 ~~i~~~L~~~~~~~~~~l~~~~l~~l~~~~~~~~l~~l~~~i~~~id~~~~--~~~~~~I~~g~d~~Ld~lr~~~~~~~~ 482 (888)
+.+...+. +.+.+ ..++.+.+.|+.+|+.+++ ..+++.|++|+|++||++|+.+.+.++
T Consensus 360 ~~l~~~l~-----------------l~~~l--~~~~~l~~~i~~~i~~~~~~~~~~~~~i~~g~~~~Ld~lr~~~~~~~~ 420 (765)
T 1ewq_A 360 PELRALLG-----------------EEVGL--PDLSPLKEELEAALVEDPPLKVSEGGLIREGYDPDLDALRAAHREGVA 420 (765)
T ss_dssp HHHHHHHC-----------------TTSCC--CCCHHHHHHHHHHBCSSCCSCTTSSCCBCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------HHHCC--CCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999998-----------------77516--537999999999863464344204775378878999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCEEEEECHHHHHHHHHHHHHHH
Q ss_conf 99999999983239994462255334422599998058831101346753899987315499977569999999999999
Q 002722 483 QIHSLHKQTASDLDLPVDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKVLE 562 (888)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~~~l~l~~~~~~gy~i~v~~~~~~~~~~~~~~~~~~~~~~k~~~~f~t~~l~~L~~~~~~~~~ 562 (888)
++.++..++++.++++ .+++.|++..||+|+|++.....++ . +|+..+++++..||+|++++++++++.++.+
T Consensus 421 ~l~~~~~~~~~~~~~~---~l~i~~~~~~gy~i~v~~~~~~~vp--~--~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~ 493 (765)
T 1ewq_A 421 YFLELEERERERTGIP---TLKVGYNAVFGYYLEVTRPYYERVP--K--EYRPVQTLKDRQRYTLPEMKEKEREVYRLEA 493 (765)
T ss_dssp HHHHHHHHHHHHHCCT---TCEEEEETTTEEEEEEEGGGGGGSC--T--TCEEEEECSSEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC---CEEEEECCCEEEEEEEEHHHHHCCC--C--CEEEEEECCCCCEEECHHHHHHHHHHHHHHH
T ss_conf 9999999999972999---5589862641599996467650398--6--3599872268757877899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCC
Q ss_conf 99999999999999999741999999999999999999855887229999877844899974189985767606512584
Q 002722 563 EYKNCQKELVNRVIQTAVTFSEIFKSLATMLSELDVLLSFADLASSCPTPYTRPDINPPDVGDIILEGSRHPCVEAQDWV 642 (888)
Q Consensus 563 ~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~ia~LD~l~slA~~a~~~~~~~~~P~~~~~~~~~l~i~~~rhp~~e~~~~~ 642 (888)
++..++.+++.++.+.+..+.+.|..+..++++|||++|+|.+|.. .+||||.+ + +.+.+++||||+++. +.
T Consensus 494 ~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~la~LD~l~s~a~~a~~--~~~~~P~~-~---~~i~i~~~rHP~le~--~~ 565 (765)
T 1ewq_A 494 LIRRREEEVFLEVRERAKRQAEALREAARILAELDVYAALAEVAVR--YGYVRPRF-G---DRLQIRAGRHPVVER--RT 565 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCBCCEE-S---SSEEEEEECCTTGGG--TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCEEECC-C---CCEEEEEEECCEECC--CC
T ss_conf 9999999999999999999899999999999999999954999986--79334135-7---738999727863706--88
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCHHHHH
Q ss_conf 20048753457997079999159987157984444778662117633466545217999998649800342051404899
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQE 722 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~s~f~~e 722 (888)
.+|+||++|+ |++++|+||||||||||||+++++.+++|+|+++|+..+.+++++++|++++..|++..+.|+|+.+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e 642 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVE 642 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHH
T ss_pred CEEEEECCCC---CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEHHHHHCCCCHHHHHHHCCCHHHHH
T ss_conf 4575110577---8689999999987689999998656531168553044051343777653197899987423677899
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 99999999838999399980999999945499999999999985399739999067469898531123322334542768
Q 002722 723 MLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVAN 802 (888)
Q Consensus 723 ~~~~~~il~~~~~~sLvllDE~~~gtd~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~ 802 (888)
|.+++.++..+++|+|+|+||||+||++.|+.++++++++++.+ .+++++++||++++..++ . +.+.|
T Consensus 643 ~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~-~----------~~v~n 710 (765)
T 1ewq_A 643 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG-L----------PRLKN 710 (765)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC-C----------TTEEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH-H----------HCCEE
T ss_conf 99999999856689789998899888876899999999999996-899899992788999765-4----------16058
Q ss_pred EEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999997479917786783379999968899999879999999999999999722
Q 002722 803 YHVSAHIDSTSRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVTLAREKAAELED 858 (888)
Q Consensus 803 ~~~~~~~~~~~~~~~~~y~l~~G~~~~s~gi~vA~lag~p~~vi~rA~~~~~~le~ 858 (888)
+||.+..+ ++.++|+|++.+|++++|||++||++||+|++||+||++++.+||+
T Consensus 711 ~~~~~~~~--~~~l~f~ykl~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 711 LHVAAREE--AGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp EEEEEECC--SSSCEEEEEEEESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEC--CCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 99999970--8907898789778999966999999829899999999999998741
No 6
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=152.13 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH-----------------------HHCCCCCCCCCC---CC
Q ss_conf 2004875345799707999915998715798444477866-----------------------211763346654---52
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM-----------------------AQVGSFVPCDRA---SI 696 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l-----------------------aq~g~~vpa~~~---~~ 696 (888)
..+.++++|++..|++++|.|||||||||++|+++++... .+--.|||.... ..
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~ 120 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCEEEEECCCCCCCCC
T ss_conf 37887469998489899999589955999999996699999629999999987589879998738689992787568888
Q ss_pred CH---------------------HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 17---------------------999998649800342051404899999999998-38999399980999999945499
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~ 754 (888)
++ ++.++.++|..+......+.++++++|...|.+ .+.+|.++|+|||++|+|+....
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 99999999998659987899999999999769934761994558999999999999996699999997987568999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 9999999999853997399990674698-9853112332233454276899999
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSA 807 (888)
Q Consensus 755 ~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~ 807 (888)
.+ ..++..+.++.|.+++++||+.+.+ .++++ ...+.++++..
T Consensus 201 ~i-~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr---------v~vl~~G~iv~ 244 (366)
T 3tui_C 201 SI-LELLKDINRRLGLTILLITHEMDVVKRICDC---------VAVISNGELIE 244 (366)
T ss_dssp HH-HHHHHHHHHHSCCEEEEEESCHHHHHHHCSE---------EEEEETTEEEE
T ss_pred HH-HHHHHHHHHHCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEE
T ss_conf 99-9999999973799999995689999996999---------99998998999
No 7
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=151.89 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=115.1
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH------------------HCCCCCCCCCCC---CCH--
Q ss_conf 420048753457997079999159987157984444778662------------------117633466545---217--
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA------------------QVGSFVPCDRAS---ISV-- 698 (888)
Q Consensus 642 ~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~la------------------q~g~~vpa~~~~---~~~-- 698 (888)
...+.++++|++..|++++|.|||||||||+||+++++.... .--.+|+++.+- +++
T Consensus 15 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~e 94 (381)
T 3rlf_A 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAE 94 (381)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHH
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHH
T ss_conf 99999656899879989999968995599999999769988971999999999879977888899906875789999999
Q ss_pred -------------------HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf -------------------999998649800342051404899999999998-389993999809999999454999999
Q 002722 699 -------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGFGLAW 758 (888)
Q Consensus 699 -------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~~i~~ 758 (888)
++.++..++..+......+.++++++|...+.+ .+.+|.++|+|||++|+|+.....+ .
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l-~ 173 (381)
T 3rlf_A 95 NMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-R 173 (381)
T ss_dssp HHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-H
T ss_conf 999999775999899999999999885994165399257999999999999999819999999898767999999999-9
Q ss_pred HHHHHHHHCCCCEEEEEECCHHH-HHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99999985399739999067469-898531123322334542768999999
Q 002722 759 AICEHLVEEIRAPTLFATHFHEL-TALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 759 ~~~~~l~~~~~~~~l~~TH~~~l-~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
..+..+.++.|.++|++||+.+. ..++++ ...+.++++...
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDr---------i~vl~~G~i~~~ 215 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADK---------IVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSE---------EEEEETTEEEEE
T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 999999986798899998899999986999---------999989989998
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=151.16 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=115.0
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH----------------------HCCCCCCCCCC---CC
Q ss_conf 420048753457997079999159987157984444778662----------------------11763346654---52
Q 002722 642 VNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILMA----------------------QVGSFVPCDRA---SI 696 (888)
Q Consensus 642 ~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~la----------------------q~g~~vpa~~~---~~ 696 (888)
...+.++++|++..|++++|+|||||||||+||+++++.... +--.||++..+ .+
T Consensus 16 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~l 95 (359)
T 3fvq_A 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHL 95 (359)
T ss_dssp TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTS
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHCCEEEEECCCCCCCCC
T ss_conf 98889753899959989999999980599999999669989973899999997545566554108889990787578999
Q ss_pred CH---------------------HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 17---------------------999998649800342051404899999999998-38999399980999999945499
Q 002722 697 SV---------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTSTYDGF 754 (888)
Q Consensus 697 ~~---------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd~~~~~ 754 (888)
++ ++.++..++..+......+.++++++|...+.+ .+.+|.++|+|||++|+|+....
T Consensus 96 tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~ 175 (359)
T 3fvq_A 96 TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRR 175 (359)
T ss_dssp CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 99999999998769986899999999998869903755892457999999999999997399999996974367999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEEE
Q ss_conf 9999999999853997399990674698-985311233223345427689999999
Q 002722 755 GLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAHI 809 (888)
Q Consensus 755 ~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 809 (888)
.+...+.+...+ .+.++|++||+.+.+ .++++ ...+.++++....
T Consensus 176 ~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDr---------i~vl~~G~i~~~g 221 (359)
T 3fvq_A 176 QIREDMIAALRA-NGKSAVFVSHDREEALQYADR---------IAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSE---------EEEEETTEEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEEE
T ss_conf 999999999985-799899994999999987999---------9999899899981
No 9
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=1.00 E-value=1 Score=150.00 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH--------------------HHHCCCCCCCCC---CCCC
Q ss_conf 84200487534579970799991599871579844447786--------------------621176334665---4521
Q 002722 641 WVNFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNIL--------------------MAQVGSFVPCDR---ASIS 697 (888)
Q Consensus 641 ~~~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~--------------------laq~g~~vpa~~---~~~~ 697 (888)
+...+.++++|++..|++++|+|||||||||++|.++++.. .++...+++... ...+
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFS 101 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCB
T ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHEEEEEECCCCCCCCCC
T ss_conf 99567876589986998999999999859999999966998887389999999775998998530899923775678979
Q ss_pred H-------------------HHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHH-CC------CCCEEEEECCCCCCCHH
Q ss_conf 7-------------------9999986498003420514048999999999983-89------99399980999999945
Q 002722 698 V-------------------RDCIFARVGAGDCQLRGVSTFMQEMLETASILKG-AT------DRSLIIIDELGRGTSTY 751 (888)
Q Consensus 698 ~-------------------~d~i~~~~~~~d~~~~~~s~f~~e~~~~~~il~~-~~------~~sLvllDE~~~gtd~~ 751 (888)
+ ++.++.+++..+......++++++++|...+.+. +. +|.++|+|||++|+|+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 99999855420685779999999998759855755992407899999999999996644568899999983964469999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 4999999999999853997399990674698-98531123322334542768999999
Q 002722 752 DGFGLAWAICEHLVEEIRAPTLFATHFHELT-ALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 752 ~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~-~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
....+ ..++..+.+..+++++++||+.+.+ .++++ ...+.++++...
T Consensus 182 ~~~~i-~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~---------v~vl~~G~i~~~ 229 (266)
T 4g1u_C 182 HQQHT-LRLLRQLTRQEPLAVCCVLHDLNLAALYADR---------IMLLAQGKLVAC 229 (266)
T ss_dssp HHHHH-HHHHHHHHHHSSEEEEEECSCHHHHHHHCSE---------EEEEETTEEEEE
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEECCHHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 99999-9999999973898999997698999986899---------999989989998
No 10
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=1.00 E-value=1 Score=149.81 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=110.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHH------------------------HHCCCCCCCCCC---C
Q ss_conf 2004875345799707999915998715798444477866------------------------211763346654---5
Q 002722 643 NFIPNDCKLIRGKSWFQIITGPNMGGKSTFIRQVGVNILM------------------------AQVGSFVPCDRA---S 695 (888)
Q Consensus 643 ~~v~n~~~~~~~~~~~~~itGpN~~GKSTllr~i~~~~~l------------------------aq~g~~vpa~~~---~ 695 (888)
..+.++++|++..|++++|+||||||||||+|.++++... .+.-.|||+... .
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 97 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPL 97 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf 04687436898699899999999984999999995599999659999999845289889999863569999568756889
Q ss_pred CCHHH------------------------HHHHHCCCCHHH-HHCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCC
Q ss_conf 21799------------------------999864980034-2051404899999999998-389993999809999999
Q 002722 696 ISVRD------------------------CIFARVGAGDCQ-LRGVSTFMQEMLETASILK-GATDRSLIIIDELGRGTS 749 (888)
Q Consensus 696 ~~~~d------------------------~i~~~~~~~d~~-~~~~s~f~~e~~~~~~il~-~~~~~sLvllDE~~~gtd 749 (888)
+++.+ .++..++..+.. ....++++++++|...+.+ .+.+|.++|+|||++|+|
T Consensus 98 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD 177 (235)
T 3tif_A 98 LTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALD 177 (235)
T ss_dssp SCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 86999999798764115788799999999999977997456509944589999999999999972999999948866699
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 45499999999999985399739999067469898531123322334542768999999
Q 002722 750 TYDGFGLAWAICEHLVEEIRAPTLFATHFHELTALAHENANEFNTKQMVGVANYHVSAH 808 (888)
Q Consensus 750 ~~~~~~i~~~~~~~l~~~~~~~~l~~TH~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~~ 808 (888)
+.....+ ..++..+.+..+.+++++||+.+++.++++ ...+.++++...
T Consensus 178 ~~~~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~---------i~~l~~G~i~~~ 226 (235)
T 3tif_A 178 SKTGEKI-MQLLKKLNEEDGKTVVVVTHDINVARFGER---------IIYLKDGEVERE 226 (235)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCEEEEECSCHHHHTTSSE---------EEEEETTEEEEE
T ss_pred HHHHHHH-HHHHHHHHHHCCCEEEEECCCHHHHHHCCE---------EEEEECCEEEEE
T ss_conf 8999999-999999999769999999188889974898---------999989989987
Done!