Query 002724
Match_columns 888
No_of_seqs 625 out of 4165
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:51:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02252 nitrate reductase [NA 100.0 5E-198 1E-202 1786.5 83.8 822 59-888 49-888 (888)
2 KOG0535 Sulfite oxidase, molyb 100.0 5E-125 1E-129 973.5 24.8 378 78-473 2-381 (381)
3 cd02112 eukary_NR_Moco molybdo 100.0 1E-104 3E-109 889.2 38.4 386 84-469 1-386 (386)
4 PLN00177 sulfite oxidase; Prov 100.0 9.5E-96 2E-100 818.4 37.8 363 93-472 15-389 (393)
5 cd02111 eukary_SO_Moco molybdo 100.0 2.1E-93 4.5E-98 795.3 36.3 359 100-470 3-364 (365)
6 cd02114 bact_SorA_Moco sulfite 100.0 2.2E-89 4.7E-94 763.6 36.1 352 93-469 14-367 (367)
7 cd02113 bact_SoxC_Moco bacteri 100.0 6.9E-83 1.5E-87 698.9 33.4 319 112-472 1-324 (326)
8 cd02110 SO_family_Moco_dimer S 100.0 1.9E-80 4.1E-85 682.4 32.8 315 127-469 1-317 (317)
9 cd02107 YedY_like_Moco YedY_li 100.0 2.7E-46 5.9E-51 385.1 16.5 189 124-353 11-214 (218)
10 KOG0534 NADH-cytochrome b-5 re 100.0 5.2E-44 1.1E-48 382.4 26.0 229 639-888 42-286 (286)
11 PF00174 Oxidored_molyb: Oxido 100.0 1.7E-42 3.7E-47 349.9 13.1 168 131-314 1-169 (169)
12 cd02108 bact_SO_family_Moco ba 100.0 6.3E-42 1.4E-46 348.6 16.8 169 121-320 9-184 (185)
13 cd02109 arch_bact_SO_family_Mo 100.0 4.2E-41 9.1E-46 341.8 17.7 162 126-319 9-170 (180)
14 PRK05363 TMAO/DMSO reductase; 100.0 1.1E-39 2.4E-44 350.7 16.1 174 121-318 73-259 (319)
15 PF03404 Mo-co_dimer: Mo-co ox 100.0 2.7E-38 5.8E-43 305.0 12.2 128 340-471 2-130 (131)
16 PTZ00319 NADH-cytochrome B5 re 100.0 1.8E-35 3.9E-40 325.0 28.5 249 638-888 23-300 (300)
17 cd00321 SO_family_Moco Sulfite 100.0 4.4E-35 9.5E-40 292.1 15.5 155 129-306 1-156 (156)
18 PTZ00274 cytochrome b5 reducta 100.0 3.3E-33 7.3E-38 309.2 25.8 223 645-888 49-325 (325)
19 cd06188 NADH_quinone_reductase 100.0 5.7E-33 1.2E-37 302.8 23.8 229 645-887 6-280 (283)
20 cd06211 phenol_2-monooxygenase 100.0 1.4E-32 2.9E-37 292.2 24.7 221 644-887 2-235 (238)
21 COG2041 Sulfite oxidase and re 100.0 3.3E-34 7.1E-39 308.6 12.2 168 121-320 68-241 (271)
22 PRK11872 antC anthranilate dio 100.0 1.8E-32 3.8E-37 306.5 25.6 217 645-887 103-332 (340)
23 cd06189 flavin_oxioreductase N 100.0 1.7E-32 3.6E-37 288.7 23.3 212 651-887 1-221 (224)
24 cd06217 FNR_iron_sulfur_bindin 100.0 7.1E-32 1.5E-36 285.4 25.4 217 648-887 1-232 (235)
25 cd06210 MMO_FAD_NAD_binding Me 100.0 8.3E-32 1.8E-36 285.4 24.5 215 649-887 2-232 (236)
26 PRK07609 CDP-6-deoxy-delta-3,4 100.0 8.9E-32 1.9E-36 300.7 24.8 220 644-887 98-329 (339)
27 PRK08051 fre FMN reductase; Va 100.0 1.1E-31 2.3E-36 284.6 23.3 215 648-887 2-226 (232)
28 cd06183 cyt_b5_reduct_like Cyt 100.0 1.6E-31 3.6E-36 282.0 24.5 217 651-888 1-234 (234)
29 cd06215 FNR_iron_sulfur_bindin 100.0 2.5E-31 5.3E-36 280.5 24.9 212 652-887 2-228 (231)
30 cd06209 BenDO_FAD_NAD Benzoate 100.0 2.6E-31 5.6E-36 280.3 24.5 211 649-887 2-224 (228)
31 PRK10684 HCP oxidoreductase, N 100.0 2.3E-31 5E-36 296.7 25.1 215 648-887 9-234 (332)
32 cd06212 monooxygenase_like The 100.0 2.8E-31 6.1E-36 280.7 24.5 214 650-887 2-228 (232)
33 cd06213 oxygenase_e_transfer_s 100.0 5.5E-31 1.2E-35 277.8 23.8 211 650-887 2-224 (227)
34 cd06184 flavohem_like_fad_nad_ 100.0 1.1E-30 2.3E-35 278.9 26.0 216 646-887 4-240 (247)
35 cd06191 FNR_iron_sulfur_bindin 100.0 8.5E-31 1.8E-35 276.9 25.0 212 652-887 2-228 (231)
36 PRK08345 cytochrome-c3 hydroge 100.0 9.5E-31 2.1E-35 286.3 24.3 217 645-887 2-243 (289)
37 cd06195 FNR1 Ferredoxin-NADP+ 100.0 1.2E-30 2.6E-35 277.7 23.8 211 652-887 1-238 (241)
38 cd06196 FNR_like_1 Ferredoxin 100.0 1.4E-30 3.1E-35 272.7 22.8 204 650-887 2-217 (218)
39 PRK13289 bifunctional nitric o 100.0 1.8E-30 3.9E-35 296.3 24.9 217 646-887 152-389 (399)
40 cd06190 T4MO_e_transfer_like T 100.0 2.1E-30 4.5E-35 274.0 23.4 214 653-887 1-228 (232)
41 cd06187 O2ase_reductase_like T 100.0 2.1E-30 4.6E-35 272.1 23.0 210 653-887 1-221 (224)
42 PRK05464 Na(+)-translocating N 100.0 3.7E-30 8.1E-35 294.6 26.0 228 646-887 131-404 (409)
43 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 3.9E-30 8.4E-35 288.9 25.3 218 648-887 1-238 (352)
44 cd06216 FNR_iron_sulfur_bindin 100.0 1.1E-29 2.3E-34 270.7 27.1 212 646-887 15-240 (243)
45 cd00322 FNR_like Ferredoxin re 100.0 3.5E-30 7.5E-35 269.2 22.8 209 655-887 2-222 (223)
46 PTZ00306 NADH-dependent fumara 100.0 4.6E-30 9.9E-35 325.9 27.0 237 636-887 902-1160(1167)
47 TIGR01941 nqrF NADH:ubiquinone 100.0 5.7E-30 1.2E-34 292.7 24.7 228 646-887 127-400 (405)
48 cd06214 PA_degradation_oxidore 100.0 9.2E-30 2E-34 270.4 24.2 215 649-887 2-237 (241)
49 PRK10926 ferredoxin-NADP reduc 100.0 1.8E-29 3.8E-34 270.4 25.4 211 647-880 3-232 (248)
50 PRK08221 anaerobic sulfite red 100.0 1.9E-29 4.2E-34 272.4 23.6 209 649-887 8-223 (263)
51 cd06194 FNR_N-term_Iron_sulfur 100.0 2E-29 4.4E-34 264.7 23.0 208 653-887 1-218 (222)
52 cd06221 sulfite_reductase_like 100.0 2.4E-29 5.2E-34 270.1 22.7 209 653-887 1-221 (253)
53 COG1018 Hmp Flavodoxin reducta 100.0 7.4E-29 1.6E-33 267.1 26.0 210 646-887 3-227 (266)
54 PLN03116 ferredoxin--NADP+ red 100.0 4.7E-29 1E-33 275.2 24.1 219 645-875 21-279 (307)
55 PRK05713 hypothetical protein; 100.0 4E-29 8.7E-34 276.4 23.3 206 648-887 91-305 (312)
56 TIGR02911 sulfite_red_B sulfit 100.0 1.5E-28 3.3E-33 265.1 23.4 209 650-888 7-222 (261)
57 PLN03115 ferredoxin--NADP(+) r 100.0 2.4E-28 5.3E-33 273.6 25.5 221 644-877 86-341 (367)
58 cd06208 CYPOR_like_FNR These f 100.0 3E-28 6.5E-33 266.2 23.9 219 645-876 5-260 (286)
59 COG0543 UbiB 2-polyprenylpheno 100.0 3E-27 6.5E-32 253.7 23.9 200 650-880 9-217 (252)
60 cd06201 SiR_like2 Cytochrome p 100.0 1.5E-27 3.3E-32 261.0 21.9 196 646-876 43-266 (289)
61 cd06198 FNR_like_3 NAD(P) bind 100.0 4E-27 8.6E-32 246.4 21.8 194 660-887 6-212 (216)
62 cd06219 DHOD_e_trans_like1 FAD 100.0 4.7E-27 1E-31 251.7 21.4 194 651-880 1-205 (248)
63 PRK06222 ferredoxin-NADP(+) re 100.0 5E-27 1.1E-31 256.0 21.3 194 651-880 2-206 (281)
64 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.5E-26 3.3E-31 247.5 21.0 192 653-880 1-205 (246)
65 cd06185 PDR_like Phthalate dio 99.9 1.7E-26 3.7E-31 240.5 20.8 195 654-887 1-207 (211)
66 cd06192 DHOD_e_trans_like FAD/ 99.9 6.9E-26 1.5E-30 241.7 22.8 195 653-886 1-207 (243)
67 TIGR03224 benzo_boxA benzoyl-C 99.9 1.1E-25 2.3E-30 257.4 24.1 215 644-878 138-386 (411)
68 cd06220 DHOD_e_trans_like2 FAD 99.9 1.2E-25 2.5E-30 238.6 21.3 190 651-886 1-196 (233)
69 PRK05802 hypothetical protein; 99.9 2.6E-25 5.6E-30 246.4 23.6 207 641-880 57-281 (320)
70 cd06182 CYPOR_like NADPH cytoc 99.9 1.7E-25 3.8E-30 242.1 20.5 198 661-877 15-237 (267)
71 PRK00054 dihydroorotate dehydr 99.9 3.1E-25 6.7E-30 237.8 22.2 192 647-880 3-206 (250)
72 COG2871 NqrF Na+-transporting 99.9 9.7E-26 2.1E-30 234.2 15.0 227 646-887 133-405 (410)
73 COG4097 Predicted ferric reduc 99.9 6.4E-25 1.4E-29 236.4 17.9 202 646-881 213-427 (438)
74 cd06200 SiR_like1 Cytochrome p 99.9 2.3E-24 5E-29 230.5 19.7 200 652-876 2-224 (245)
75 cd06197 FNR_like_2 FAD/NAD(P) 99.9 3E-24 6.4E-29 226.1 17.0 176 655-880 2-215 (220)
76 PRK12778 putative bifunctional 99.9 9.9E-24 2.1E-28 258.9 21.9 194 651-880 2-206 (752)
77 cd06193 siderophore_interactin 99.9 6.9E-24 1.5E-28 225.4 16.6 196 653-887 1-230 (235)
78 PRK12779 putative bifunctional 99.9 8.2E-23 1.8E-27 253.8 24.4 206 647-880 647-872 (944)
79 cd06207 CyPoR_like NADPH cytoc 99.9 3.4E-22 7.4E-27 227.1 17.3 181 681-880 162-355 (382)
80 PRK12775 putative trifunctiona 99.9 2E-21 4.4E-26 243.3 22.2 193 651-880 2-206 (1006)
81 cd06206 bifunctional_CYPOR The 99.9 1.4E-21 2.9E-26 222.4 15.5 189 673-880 149-353 (384)
82 cd06199 SiR Cytochrome p450- l 99.9 1.8E-21 4E-26 219.4 14.4 184 672-876 133-329 (360)
83 cd06203 methionine_synthase_re 99.8 1.8E-20 3.8E-25 214.1 17.0 175 681-875 172-366 (398)
84 cd06186 NOX_Duox_like_FAD_NADP 99.8 3.8E-20 8.2E-25 192.6 18.0 174 655-880 3-201 (210)
85 cd06204 CYPOR NADPH cytochrome 99.8 2.8E-20 6.1E-25 213.5 17.0 181 681-876 176-385 (416)
86 TIGR01931 cysJ sulfite reducta 99.8 1.3E-20 2.8E-25 224.9 14.0 187 672-877 370-567 (597)
87 KOG0537 Cytochrome b5 [Energy 99.8 1.9E-21 4.1E-26 185.4 5.4 84 525-608 3-87 (124)
88 PLN02292 ferric-chelate reduct 99.8 1.8E-19 3.9E-24 215.4 22.2 195 648-866 324-549 (702)
89 cd06202 Nitric_oxide_synthase 99.8 8.4E-20 1.8E-24 209.0 17.4 179 681-876 175-371 (406)
90 PRK06214 sulfite reductase; Pr 99.8 1.1E-19 2.5E-24 212.1 18.7 181 681-876 314-499 (530)
91 PRK10953 cysJ sulfite reductas 99.8 2E-19 4.2E-24 214.0 14.9 184 672-876 373-569 (600)
92 KOG0536 Flavohemoprotein b5+b5 99.7 1.1E-18 2.4E-23 163.1 6.4 77 526-602 67-144 (145)
93 PF00175 NAD_binding_1: Oxidor 99.7 4.5E-18 9.7E-23 158.4 9.5 106 763-872 1-109 (109)
94 PF00173 Cyt-b5: Cytochrome b5 99.7 6.8E-18 1.5E-22 147.8 5.9 74 528-601 1-76 (76)
95 COG0369 CysJ Sulfite reductase 99.7 2.1E-16 4.5E-21 186.0 17.5 179 681-876 371-556 (587)
96 KOG3378 Globins and related he 99.7 1.1E-16 2.3E-21 166.1 9.0 200 647-886 148-376 (385)
97 PLN02631 ferric-chelate reduct 99.7 1.7E-15 3.6E-20 181.3 18.4 156 650-827 309-490 (699)
98 PLN02844 oxidoreductase/ferric 99.6 4.3E-15 9.3E-20 178.6 21.1 188 652-866 315-538 (722)
99 PLN03199 delta6-acyl-lipid des 99.6 1.7E-15 3.6E-20 176.9 8.7 99 504-605 2-100 (485)
100 KOG1158 NADP/FAD dependent oxi 99.6 1.2E-14 2.7E-19 170.9 14.1 184 681-876 420-614 (645)
101 PLN03198 delta6-acyl-lipid des 99.6 2.5E-15 5.4E-20 175.9 7.1 77 526-603 103-179 (526)
102 PF00970 FAD_binding_6: Oxidor 99.6 3.1E-14 6.7E-19 130.9 12.0 85 650-743 1-99 (99)
103 KOG1159 NADP-dependent flavopr 99.5 4.1E-14 8.8E-19 157.6 14.6 176 682-877 367-545 (574)
104 COG5274 CYB5 Cytochrome b invo 99.4 7.2E-14 1.6E-18 137.3 5.4 108 482-603 19-127 (164)
105 KOG0039 Ferric reductase, NADH 99.4 1.1E-11 2.4E-16 149.3 18.1 216 648-886 354-640 (646)
106 COG3915 Uncharacterized protei 99.3 2E-11 4.3E-16 114.9 9.1 121 145-303 25-154 (155)
107 PRK06567 putative bifunctional 99.2 1.9E-10 4.2E-15 140.9 18.4 120 647-794 789-923 (1028)
108 KOG4232 Delta 6-fatty acid des 99.2 8E-12 1.7E-16 138.5 3.0 83 526-609 7-91 (430)
109 PF08030 NAD_binding_6: Ferric 99.1 8.9E-11 1.9E-15 116.5 8.4 115 759-874 2-155 (156)
110 COG2375 ViuB Siderophore-inter 98.9 4E-08 8.8E-13 105.0 18.6 199 647-887 16-253 (265)
111 KOG4576 Sulfite oxidase, heme- 98.9 6.4E-10 1.4E-14 104.5 3.4 78 525-604 78-160 (167)
112 COG4892 Predicted heme/steroid 98.1 6.3E-06 1.4E-10 69.5 5.4 74 527-602 2-77 (81)
113 PF08021 FAD_binding_9: Sidero 97.8 8E-05 1.7E-09 71.1 8.2 82 652-741 1-117 (117)
114 PF08022 FAD_binding_8: FAD-bi 97.4 2.6E-05 5.6E-10 73.0 -1.2 79 650-740 3-103 (105)
115 KOG1110 Putative steroid membr 97.0 0.0029 6.4E-08 63.7 8.6 78 525-604 54-157 (183)
116 PF02012 BNR: BNR/Asp-box repe 93.8 0.042 9.2E-07 31.4 1.5 11 390-400 2-12 (12)
117 PF04954 SIP: Siderophore-inte 93.7 0.39 8.5E-06 45.9 9.1 110 759-887 2-112 (119)
118 KOG1108 Predicted heme/steroid 93.0 0.083 1.8E-06 55.1 3.4 55 526-581 59-116 (281)
119 PF10648 Gmad2: Immunoglobulin 86.6 5.8 0.00013 36.1 9.4 81 350-445 4-85 (88)
120 PF13754 Big_3_4: Bacterial Ig 85.6 0.89 1.9E-05 37.4 3.3 29 421-450 14-42 (54)
121 PF15418 DUF4625: Domain of un 85.4 5.9 0.00013 38.8 9.5 86 353-450 25-125 (132)
122 PF12245 Big_3_2: Bacterial Ig 63.3 6.5 0.00014 33.0 2.6 28 421-448 12-39 (60)
123 smart00137 MAM Domain in mepri 59.0 58 0.0013 32.5 9.2 80 399-486 61-140 (161)
124 PF00667 FAD_binding_1: FAD bi 58.3 9.4 0.0002 40.4 3.5 41 681-722 177-219 (219)
125 PF06594 HCBP_related: Haemoly 57.4 11 0.00024 29.4 2.8 34 368-403 10-43 (43)
126 PF03422 CBM_6: Carbohydrate b 52.1 93 0.002 29.2 8.9 69 367-445 43-113 (125)
127 PF14901 Jiv90: Cleavage induc 44.1 12 0.00027 34.4 1.4 17 543-559 57-73 (94)
128 PF03370 CBM_21: Putative phos 40.5 70 0.0015 30.3 6.0 83 347-441 9-95 (113)
129 cd00260 Sialidase Sialidases o 38.7 80 0.0017 35.4 7.2 38 368-405 156-193 (351)
130 COG4719 Uncharacterized protei 38.0 23 0.0005 35.2 2.2 29 369-401 100-128 (176)
131 TIGR02807 cas6_var CRISPR-asso 37.1 12 0.00026 38.8 0.2 20 263-282 4-23 (190)
132 cd06263 MAM Meprin, A5 protein 36.5 2E+02 0.0042 28.2 8.8 81 399-487 57-137 (157)
133 PRK12446 undecaprenyldiphospho 35.2 51 0.0011 37.5 4.9 25 759-783 2-28 (352)
134 PF13750 Big_3_3: Bacterial Ig 29.7 2.3E+02 0.0051 28.5 8.0 60 384-450 81-141 (158)
135 PF05547 Peptidase_M6: Immune 28.1 1E+02 0.0022 38.2 6.0 58 384-443 383-444 (645)
136 PLN02631 ferric-chelate reduct 26.6 91 0.002 39.0 5.3 26 852-878 661-686 (699)
137 PF09559 Cas6: Cas6 Crispr; I 26.6 22 0.00047 37.2 -0.0 18 265-282 3-20 (195)
138 PF13750 Big_3_3: Bacterial Ig 26.5 77 0.0017 32.0 3.9 28 421-448 3-32 (158)
139 PRK00036 primosomal replicatio 25.6 1.7E+02 0.0037 27.8 5.7 24 717-740 55-78 (107)
140 PLN02292 ferric-chelate reduct 24.4 1E+02 0.0022 38.6 5.2 26 852-878 664-689 (702)
141 PF00629 MAM: MAM domain; Int 23.1 3.3E+02 0.0071 26.0 7.7 62 417-485 75-136 (160)
142 PF02662 FlpD: Methyl-viologen 22.3 1E+02 0.0022 29.9 3.7 60 816-887 27-98 (124)
143 KOG1611 Predicted short chain- 21.9 2.5E+02 0.0054 30.4 6.7 55 762-823 6-61 (249)
144 PF07495 Y_Y_Y: Y_Y_Y domain; 21.8 1E+02 0.0022 25.6 3.2 28 422-450 30-57 (66)
145 COG1465 Predicted alternative 21.6 3.9E+02 0.0085 29.8 8.2 77 648-740 199-295 (376)
146 TIGR03503 conserved hypothetic 20.9 1.3E+03 0.028 26.8 12.6 48 262-316 19-77 (374)
147 PF14870 PSII_BNR: Photosynthe 20.5 60 0.0013 36.4 2.0 27 375-405 246-272 (302)
No 1
>PLN02252 nitrate reductase [NADPH]
Probab=100.00 E-value=4.6e-198 Score=1786.54 Aligned_cols=822 Identities=79% Similarity=1.354 Sum_probs=755.7
Q ss_pred cchHHHHHHHHhCCCCCCCCCCCCCCCCCCCcccccCCCceeecCCCCCCCCCCccccccCCCCCCCCcceEecCCCCCC
Q 002724 59 ENEADYMEIIRKGNSELEPSILDPRDEGTADNWIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPK 138 (888)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~t~d~~~~r~~~l~~~~~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~ 138 (888)
+++.+|.+++.+...+++++.||++|++|||+|++|||+|||||++||||+|||+..|+++|||||+++||||||+++|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~t~d~~~~r~~~li~~~~~~P~n~E~p~~~L~~~~~iTP~~~~yVRnH~~vP~ 128 (888)
T PLN02252 49 EDEADYEDLIVKENVEVEPSVVDPRDEGTPDEWIPRHPSLVRLTGKHPFNCEPPLARLMEHGFITPAPLHYVRNHGAVPR 128 (888)
T ss_pred cccccccccccccccccCccccChhhcCCCccccCCCccceEEcCCCCCcCCCChHHhccCCCcCCCcceEEECCCCCCc
Confidence 33344889999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceEEEccchHHHHHH
Q 002724 139 ASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKR 218 (888)
Q Consensus 139 ~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ 218 (888)
+|+++|+|+|+|+|++|++|||+||+ +||+++++++|+|+||||++|||+++++|++||.++|||+.|+||+|+|||++
T Consensus 129 ~~~~~w~l~V~G~V~~p~~ltl~dL~-~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~Wg~gavs~~~W~GV~L~dlL~~ 207 (888)
T PLN02252 129 ADWDEWTVEVTGLVKRPARLTMDELV-RFPARELPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVRLRDVLRR 207 (888)
T ss_pred cCCCCeEEEEeeecCCCeEeeHHHHh-hCCCeeEEEEEEeCCCCcccccccccccccCccccccccceEeceEHHHHHHH
Confidence 99999999999999999999999995 59999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEccCccccccccce
Q 002724 219 CGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWL 298 (888)
Q Consensus 219 ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl 298 (888)
||+.....+++||+|+|+|.++++++.+|++||||++||++.+|+||||+||||||+++|||||||||||+||+||||||
T Consensus 208 ag~~~~~~~a~~V~f~g~d~~~~~~~~~y~~sipl~~a~d~~~dvlLAy~mNGepL~~~hG~PvRlvvPG~~G~~~vKWl 287 (888)
T PLN02252 208 CGVMSRKGGALNVCFEGAEDLPGGGGSKYGTSITLERAMDPARDVILAYMQNGEPLTPDHGFPVRLIIPGFIGGRMVKWL 287 (888)
T ss_pred cCCCCCCCCceEEEEEcccccccCCCCCceeeeeHHHHhCcCCCeEEEEeeCCeECCccCCceEEEeCCCceeeeeeeEe
Confidence 99985556899999999998888766689999999999998889999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCcceeeeccccCCCCCChhhcccccccccccccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEE
Q 002724 299 KRIIVTTQESDNYYHYKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAY 378 (888)
Q Consensus 299 ~~I~v~~~~~~~~~~~~dyr~~p~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~ 378 (888)
++|+|++++++||||++|||++|++++++.+++++||+++.++|++|+|||+|++|.+++.++++.++.+++|+|+||||
T Consensus 288 ~~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~~~~~~~~~~i~G~A~ 367 (888)
T PLN02252 288 KRIIVTTAESDNYYHYRDNRVLPSHVDAELANAEGWWYKPEYIINELNINSVITTPAHDEILPINASTTQRPYTMKGYAY 367 (888)
T ss_pred eEEEEEeCCCCCceeecccccCCCcccccccccccccccCCccceeeccceEEecCCCCCEecccccCCCceEEEEEEEE
Confidence 99999999999999999999999999998888889999999999999999999999999999875444567999999999
Q ss_pred eCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCcccccc
Q 002724 379 SGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMG 458 (888)
Q Consensus 379 sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G 458 (888)
|||||+|+|||||+|||+||+.|+|.+|+.|++||++||||+|+++|+++++.|+++|+|||||++||+||++++||++|
T Consensus 368 sggg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~~g~~~~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G 447 (888)
T PLN02252 368 SGGGRKVTRVEVSLDGGETWRLCDLDHPEKPTKYGKYWCWCFWSLDVEVLDLLGAKEIAVRAWDESMNTQPEKLIWNLMG 447 (888)
T ss_pred CCCCCceEEEEEEcCCCCcceeCccCCCCCccccCCccEEEEEEEeEecccCCCceEEEEEEEcCCCCcCCCCCccCcCc
Confidence 99999999999999999999999999999999999999999999999987788999999999999999999999999999
Q ss_pred ccccceEEEEEEEeecCCCceeEEEeCCCCCCCCCCCccccccccCCCCCccccccccCCCCCCCC--CCCccCHHHHHh
Q 002724 459 MMNNCWFRVKANVCKAHKGEIGIVFEHPTQPGNQSGGWMAKERHLGRSSDANQTLKKSVSSPFMNT--TSNTYSLSEVAK 536 (888)
Q Consensus 459 ~~nn~~~~v~~~v~~~~~~~~~~~f~hp~~~~~~~ggWm~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~t~~ev~~ 536 (888)
|||||||||+|+|+++++++++|+|||||+||+++||||+|+++++.+....+.++++++++.|++ ..+.||++|+++
T Consensus 448 ~~nN~~~rv~v~v~~~~~~~~~~~f~hp~~~~~~~ggwm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~ 527 (888)
T PLN02252 448 MMNNCWFRVKVNVCKPHKGEIGLVFEHPTQPGNQSGGWMAKQKHLETASAAAPALKKSVSTPFMNTNTGSKQYTMSEVRK 527 (888)
T ss_pred eEEeeEEEEEEEEeeccCCcceEEEeCCCCccCCCCCcchhhhhcccccccccccccccCCcccCCccccceeCHHHHHh
Confidence 999999999999999999999999999999999999999999988876666667778888888777 579999999999
Q ss_pred ccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhhchHHHHHhhhcCceeEeccCCCCCCCCCCCCCC
Q 002724 537 HNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSDSSPSSPNN 616 (888)
Q Consensus 537 h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~Hs~~a~~~L~~~~IG~l~~~~~~~~~~~~~~~~ 616 (888)
|++.++|||+|+|+|||+|+|++.||||..+|+.+||+|||++|+++||..|++||++|+||+|..+.....+.. .+.
T Consensus 528 h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~Hs~~a~~~L~~~~IG~l~~~~~~~~~~~--~~~ 605 (888)
T PLN02252 528 HNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELVTTGAAASSSA--SSH 605 (888)
T ss_pred hCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhhhhHHHHHHHHhCcCCccccccccccccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987665543321 111
Q ss_pred CcCCCccccccccCCccc-cCCCCceecCCCCeeeEEEEEEEEecCceeeeeeccCC--------CCceEeee------e
Q 002724 617 SVHGASNYIGTNLAPIKE-VAPTRSVALVPREKIPCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP------L 681 (888)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~-~~~~~~v~l~p~~~~~~~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp------~ 681 (888)
+.++.... ..++.+ ....+.++|++++|.+++|++++.+|+|+++|+|++++ +|||+.|. .
T Consensus 606 ~~~~~~~~----~~~~~~~~~~~~~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g~~ 681 (888)
T PLN02252 606 PLSAISTA----SALAAASPAPGRPVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCATINGKL 681 (888)
T ss_pred cccccccc----cccccccCCcccccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEecCCeE
Confidence 11111111 012222 23457889999999999999999999999999999875 58887775 5
Q ss_pred eeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceE
Q 002724 682 CMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKL 761 (888)
Q Consensus 682 ~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~i 761 (888)
+.|+|||+|.+.+.+.|+|+||+|+++.++.+|.+|.||++|++|++|++|+|+||+|+|.|.|+|.|.++++....+++
T Consensus 682 ~~R~YSpaS~~~~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~v 761 (888)
T PLN02252 682 CMRAYTPTSSDDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKL 761 (888)
T ss_pred EEeeeEecccCCCCCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceE
Confidence 78999999999888999999999998888889889999999999999999999999999999999999998776678999
Q ss_pred EEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhC-CCeEEEEEEeccccCCccccccccC
Q 002724 762 AMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKH-DRVKVWYVVEKSIKEGWQYSTGFIT 840 (888)
Q Consensus 762 vmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~-~~f~v~~~~s~~~~~~w~~~~Grv~ 840 (888)
+|||||||||||+|||++++++..+.++|+|||++|+++|++|++||++|++++ ++|+++++++++.+++|.+..|+|+
T Consensus 762 vmIAGGsGITPi~silr~ll~~~~d~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~ 841 (888)
T PLN02252 762 AMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVT 841 (888)
T ss_pred EEEecceehhHHHHHHHHHHhccCCCCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCC
Confidence 999999999999999999998766788999999999999999999999999998 7999999999863378999999999
Q ss_pred HHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEEC
Q 002724 841 EAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 888 (888)
Q Consensus 841 ~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~F 888 (888)
+++|+++++....+..+|+|||++|++.++++.|+++|++ +++||+|
T Consensus 842 ~~ll~~~l~~~~~~~~vyiCGPp~Mi~~av~~~L~~~G~~-~~~I~~f 888 (888)
T PLN02252 842 EAMLREHLPEGGDETLALMCGPPPMIEFACQPNLEKMGYD-KDSILVF 888 (888)
T ss_pred HHHHHHhcccCCCCeEEEEeCCHHHHHHHHHHHHHHcCCC-HHHEEEC
Confidence 9999998875556788999999999985689999999999 9999998
No 2
>KOG0535 consensus Sulfite oxidase, molybdopterin-binding component [Energy production and conversion]
Probab=100.00 E-value=5.1e-125 Score=973.47 Aligned_cols=378 Identities=53% Similarity=0.943 Sum_probs=357.2
Q ss_pred CCCCCCCCCCCCcccccCCCceeecCCCCCCCCCCccccccCCCCCCCCcceEecCCCCCCcCCCCcEEEEEeccCCcee
Q 002724 78 SILDPRDEGTADNWIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPAR 157 (888)
Q Consensus 78 ~~~~~~d~~t~d~~~~r~~~l~~~~~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ 157 (888)
+..|+ |..+.| ++|||. ++++++||||||||+..|+++ ||||++|||||||++||.+++++|+|+|+|++.+|++
T Consensus 2 ~~~~~-d~~s~d--p~Rhp~-Lkv~~k~PFNAE~P~~~L~~~-fiTP~~LfyvRNH~pVP~~~~~~~~l~v~g~~~~~~~ 76 (381)
T KOG0535|consen 2 SILDP-DEYSQD--PERHPA-LKVNSKRPFNAEPPPSLLTEH-FITPNPLFYVRNHLPVPKIDPEDYSLEVTGLGGKPRK 76 (381)
T ss_pred CcCCc-cccccC--cccCcc-eeccCCCCCCCCCChhHHHhh-ccCCcceeEeeccCCCCccCchhcEEEEEecCCCCce
Confidence 33455 777777 789994 589999999999999999876 9999999999999999999999999999999999999
Q ss_pred ecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecC
Q 002724 158 FTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAE 237 (888)
Q Consensus 158 ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D 237 (888)
|||+|| +++|..+++++|+|+||||+||||+|+++|++|+.+|||||+|+|++|+|||++||+.....+++||||+|+|
T Consensus 77 lt~d~l-~s~~k~~vtatl~CaGNRR~emn~vK~vkGl~W~~~aisna~W~GarL~DvL~~~Gi~~~~~~a~hV~Fegad 155 (381)
T KOG0535|consen 77 LTLDDL-KSLPKYEVTATLQCAGNRRSEMNKVKKVKGLNWGSGAISNAVWGGARLCDVLRRAGIQSRETKALHVCFEGAD 155 (381)
T ss_pred eeHHHh-hhhccccceEEEEecCccHHHHhhHhhhccccccccccccceecCccHHHHHHHhCCCcccCcceEEEEeccc
Confidence 999999 5788899999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeecc
Q 002724 238 DLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDN 317 (888)
Q Consensus 238 ~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dy 317 (888)
+.+.| ..|++|||+++||||+.||||||+||||+|++|||||||+||||.+|+|+||||+||.|+++||++|||++||
T Consensus 156 ~d~tg--~pYgaSI~l~~A~dp~~dVilAY~mNge~L~rDHGfPvRVIVPG~vGaR~VKWL~rIiV~~kESds~~~qkDy 233 (381)
T KOG0535|consen 156 DDPTG--TPYGASIPLEKAMDPEADVILAYEMNGEPLPRDHGFPVRVIVPGVVGARMVKWLKRIIVTPKESDSHWQQKDY 233 (381)
T ss_pred cCCCC--CcccccccHhhhcCcccceEEeeeecCccCCCCCCCceEEEecccccchhhhhhhheeeccccccchhhhccc
Confidence 85554 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChhhcccccccccccccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCC
Q 002724 318 RVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDT 397 (888)
Q Consensus 318 r~~p~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~t 397 (888)
|+||+.||++ ..+||++|+ |++|||||+||.|++++.+... +++|+|+|||||||||+|+|||||+|||+|
T Consensus 234 k~f~psvd~d---~~~w~~~p~--iqe~pVqsaIctp~~~~~V~~~----~~~vtikGYA~SGGGr~i~RVdvslDgG~t 304 (381)
T KOG0535|consen 234 KGFSPSVDWD---EVDWSSKPS--IQELPVQSAICTPEDGLPVKAF----DGPVTIKGYAWSGGGRKIIRVDVSLDGGET 304 (381)
T ss_pred ccCCCccCcc---ccccccCch--hhhcCcceeecccCCCceeccC----CCceEEEEEEEeCCCceEEEEEEEecCCce
Confidence 9999999984 568999985 9999999999999999888763 389999999999999999999999999999
Q ss_pred ceEeeecCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCC--CCccccccccccceEEEEEEEee
Q 002724 398 WHVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPE--KLIWNVMGMMNNCWFRVKANVCK 473 (888)
Q Consensus 398 W~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~--~~~wN~~G~~nn~~~~v~~~v~~ 473 (888)
|..|+|++.++|++| ++||||||+++++++++..+.+|++||||++.|+||+ +.|||+|||||||||||+++||+
T Consensus 305 W~v~eldqee~~~~~-~~w~W~lw~a~v~V~~~~~~~~I~akAvD~a~NvQPe~~~~IWNlrGvl~nawhRV~~~v~~ 381 (381)
T KOG0535|consen 305 WNVAELDQEEKPDKY-KFWAWCLWSAEVPVSDGQKEKNIIAKAVDSAYNVQPETVESIWNLRGVLNNAWHRVKVNVCK 381 (381)
T ss_pred eeeeeccccccCCcc-ceEEEEEEEecccccccchhhhhHHHhhhhhhcCCcchhhhhhhHHHHhhhheeEEEeeecC
Confidence 999999999999988 9999999999999998888899999999999999999 57999999999999999999974
No 3
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=1.3e-104 Score=889.25 Aligned_cols=386 Identities=69% Similarity=1.280 Sum_probs=358.9
Q ss_pred CCCCCCcccccCCCceeecCCCCCCCCCCccccccCCCCCCCCcceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHH
Q 002724 84 DEGTADNWIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQL 163 (888)
Q Consensus 84 d~~t~d~~~~r~~~l~~~~~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL 163 (888)
|++|||+|++|||+||++++++|+|+|||+..|+.+++|||+++||||||+++|.+|.++|+|+|+|+|++|++|||+||
T Consensus 1 ~~~~~~~~~~r~~~li~~~~~~p~n~e~p~~~l~~~~~iTP~~~~yvr~h~~~P~id~~~w~L~V~G~V~~p~~ltl~dL 80 (386)
T cd02112 1 DLGTPDAWIPRDPRLIRLTGKHPFNSEPPLTELMDHGFITPSNLHYVRNHGPVPREKWEDWTVEVTGLVEKPTTLTMDEL 80 (386)
T ss_pred CCCCCcccccCCcceEEEcCCCCCcCCCChHHhcccCCcCCccceEEEcCCCCCcccCCCcEEEEEeecCCCeEEeHHHH
Confidence 78999999999999999999999999999999887889999999999999999999999999999999999999999999
Q ss_pred hhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCC
Q 002724 164 MHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGG 243 (888)
Q Consensus 164 ~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~ 243 (888)
++.||+++++++|+|+||+|+++++++++.|.+|+.++|||++|+||+|+|||++||+.+.+.+++||.|+|+|....+.
T Consensus 81 ~~~~p~~~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~WtGV~L~dlLe~aG~~~~~~~a~~V~~~g~D~~~~~~ 160 (386)
T cd02112 81 VAMFPSVTFPVTLVCAGNRRKEQNMVKKTIGFNWGAAGTSTSLWTGVRLSDLLDRCGPKSPKGGARHVCFEGADDLLPGP 160 (386)
T ss_pred HhcCCceEEEEEEEcCCCCcccccccccccCcCcccccceEeEEEeeEHHHHHHHcCCCCccCCceEEEEEccCcccccC
Confidence 65469999999999999999999999999999999999999999999999999999998533378999999999643333
Q ss_pred CCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccccCCCC
Q 002724 244 GSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSH 323 (888)
Q Consensus 244 ~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~p~~ 323 (888)
...|++||||++||++..|+||||+|||||||++|||||||||||+||+||||||++|+|+++++++|||+.|||++|++
T Consensus 161 ~~~y~~slpl~~al~~~~dvlLAy~mNGepLp~~hG~PlRlvVPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~y~~~~~~ 240 (386)
T cd02112 161 NGKYGTSITLSWAMDPSKDVMLAYKQNGELLHPDHGFPVRLIIPGQIGGRMVKWLKRIVVSDRESQNHYHFHDNRVLPSH 240 (386)
T ss_pred CCCcEeeeEHHHhhCcCCCeEEEEeeCCeECCccCCcEEEEEeCCccceeeeeEeEEEEEEecCCCCceeecccccCCcc
Confidence 45799999999999987799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhcccccccccccccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeee
Q 002724 324 VDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTL 403 (888)
Q Consensus 324 ~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l 403 (888)
++++.++.++||.+...+|++|+|||+|+.|.+++++++.+...+++++|+||||||+||+|+|||||+|||+||+.|+|
T Consensus 241 ~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~P~~~~~v~~~~~~~~~~~~i~G~A~sg~g~~I~rVeVS~DgG~tW~~A~L 320 (386)
T cd02112 241 VDAELANEEGWWYKPEYIINDLNVNSAITTPAHDEVLPLNGLTTAETYTMKGYAYAGGGRRVTRVEVSLDDGKSWKLASI 320 (386)
T ss_pred cCccccccccccccCCceeeeeccCeEEeccCCCCEeeccccCCCCeEEEEEEEEcCCCCcEEEEEEEcCCCCCceeCCC
Confidence 88877677899998888999999999999999999985332223579999999999988999999999999999999999
Q ss_pred cCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCccccccccccceEEEEE
Q 002724 404 DHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKA 469 (888)
Q Consensus 404 ~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nn~~~~v~~ 469 (888)
..+..+.++++.|||++|+++|++++.+|+++|+|||||++||+||+..+||++||+||+||||+|
T Consensus 321 ~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~QP~~~~wN~~Gy~~n~~~~v~v 386 (386)
T cd02112 321 DYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNTQPRDMTWNVMGMMNNCWFRVKI 386 (386)
T ss_pred CCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCcCCCCCCccccceeeceEEEEcC
Confidence 988878888889999999999987656799999999999999999999999999999999999985
No 4
>PLN00177 sulfite oxidase; Provisional
Probab=100.00 E-value=9.5e-96 Score=818.43 Aligned_cols=363 Identities=34% Similarity=0.686 Sum_probs=326.1
Q ss_pred ccCCCceeecCCCCCCCCCCccccccCCCCCCCCcceEecCCCCCCc-CCCCcEEEEEeccCCceeecHHHHhhhCCCeE
Q 002724 93 ERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKA-SWVDWTIEVTGLVKRPARFTMDQLMHEFPSRE 171 (888)
Q Consensus 93 ~r~~~l~~~~~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~-d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~ 171 (888)
+|++.|+ +++++|||+|||+..|. ++||||+++||||||+++|.+ |.++|+|+|+|+|++|++|||+||+ +||+++
T Consensus 15 ~r~~~l~-~~~~~P~n~E~p~~~L~-~~~iTP~~~ffvR~h~~~P~~~d~~~w~L~V~G~V~~p~~ltl~dL~-~~p~~~ 91 (393)
T PLN00177 15 PRHPSLK-INAKEPFNAEPPRSALV-SSYITPVDLFYKRNHGPIPIVDDIERYSVTITGLIENPRKLSMKDIR-KLPKYN 91 (393)
T ss_pred CCCCceE-ECCCCCCcCCCChHHhc-cCCcCCCcceEEECCCCCCCcCCCCceEEEEEeecCCCeEeeHHHHh-cCCCEE
Confidence 3888875 77899999999999887 489999999999999999988 5899999999999999999999995 799999
Q ss_pred EEEEEEeecCCcccccccccccCcccCCCcccceEEEccchHHHHHHcCCCcC----CCCeeEEEEEecCCCCCCCCCCc
Q 002724 172 FPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSR----KSGALNVCFEGAEDLPGGGGSKY 247 (888)
Q Consensus 172 ~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~----~~~a~~V~~~g~D~~~~~~~~~Y 247 (888)
++++|+|+||+|+++++++++.|++|+.++|+|++|+||+|+|||++||++.. ..+++||.|+|+|....+...+|
T Consensus 92 ~~~~l~C~GN~R~~~~~~~~~~G~~W~~gaig~a~WtGv~L~dvL~~aG~~~~~~~~~~~a~~v~f~g~d~~~~~~~~~y 171 (393)
T PLN00177 92 VTATLQCAGNRRTAMSKVRKVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTSITSSGGKHVEFVSVDKCKEENGGPY 171 (393)
T ss_pred EEEEEEecCCCccceeecccccccCcccceeecCeEECcCHHHHHHHcCCCccccccCCCceEEEEEEeccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999632 14789999999996443334579
Q ss_pred cEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccccCCCCCChh
Q 002724 248 GTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAE 327 (888)
Q Consensus 248 ~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~p~~~~~~ 327 (888)
++||||++||++..|+||||+||||||+++|||||||||||+||++|||||++|+|++++++||||+++|+++|++++.+
T Consensus 172 ~~sipl~~a~~~~~d~lLAy~mNGepLp~~hG~PlRLvvPg~~G~~svKWL~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~ 251 (393)
T PLN00177 172 KASIPLSQATNPEADVLLAYEMNGEVLNRDHGYPLRVVVPGVIGARSVKWLDSINIIAEECQGFFMQKDYKMFPPSVNWD 251 (393)
T ss_pred EEeEEHHHhhCcccCeEEEEeeCCeECchhcCCceEEEeCCEeeeeceEEeeEEEEEecCCCCcceecccccCCCCCCcc
Confidence 99999999999877999999999999999999999999999999999999999999999999999999999998887655
Q ss_pred hcccccccccccccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCC
Q 002724 328 LANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPE 407 (888)
Q Consensus 328 ~~~~~~~w~~~~~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~ 407 (888)
.. .| . ...+|++|++||+|+.|.+++.++. ++++|+||||||||++|+|||||+|||+||+.|+|..+.
T Consensus 252 ~~---~~-~-~~~~i~~~~v~S~I~~P~~~~~i~~------g~~~i~G~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~ 320 (393)
T PLN00177 252 NI---NW-S-TRRPQMDFPVQSAICSLEDVNAIKP------GKVTVAGYALSGGGRGIERVDISVDGGKTWVEASRYQKP 320 (393)
T ss_pred cc---Cc-c-ccCcceeecCCeEEecCCCCCcccC------ceEEEEEEEECCCCccEEEEEEEcCCCCCceeeeecccc
Confidence 32 23 2 3358999999999999999998863 579999999999899999999999999999999997642
Q ss_pred -CC----CCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCC--CccccccccccceEEEEEEEe
Q 002724 408 -QP----NKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEK--LIWNVMGMMNNCWFRVKANVC 472 (888)
Q Consensus 408 -~~----~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~--~~wN~~G~~nn~~~~v~~~v~ 472 (888)
.| ....+.|||++|+++|+ .+|.++|+|||||++||+||+. .+||++||+||+||||+|+|.
T Consensus 321 ~~~~~~~~~~~~~~aW~~w~~~~~---~~g~~~l~~RA~D~~G~~QP~~~~~~wN~~Gy~~n~~~rv~v~v~ 389 (393)
T PLN00177 321 GVPYISDDISSDKWAWVLFEATVD---VPQSTEIVAKAVDSAANVQPESVESIWNLRGILNTSWHRVQLRVG 389 (393)
T ss_pred ccccccccccCCccEEEEEEEEec---CCCCeEEEEEEEcCCCCCCCCCCcCCcCCCCcccccEEEEEEEEe
Confidence 11 12346789999999986 3699999999999999999996 479999999999999999985
No 5
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.1e-93 Score=795.33 Aligned_cols=359 Identities=40% Similarity=0.728 Sum_probs=324.6
Q ss_pred eecCCCCCCCCCCccccccCCCCCCCCcceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEee
Q 002724 100 RLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCA 179 (888)
Q Consensus 100 ~~~~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~ 179 (888)
+++++||+|+|||+..|. +++|||+++||||||+++|++|+++|+|+|+|+|++|++||++||++.||+++++++|+|+
T Consensus 3 ~~~~~~P~n~E~p~~~l~-~~~iTP~~~~yvr~h~~~P~~d~~~w~L~V~G~V~~p~~ltl~dL~~~~p~~~~~~~l~C~ 81 (365)
T cd02111 3 KVNSKKPFNAEPPSSLLA-SSFITPNELFYVRNHLPVPVVDPDTYSLEVEGPDGTTLSLSLEDLKSLFPKHEVTATLQCA 81 (365)
T ss_pred eEcCCCCCcCCCChHHhC-cCCcCCCCceEEECCCCCCccCccccEEEEEeecCCCcEEeHHHHHhhCCcEEEEEEEEec
Confidence 467889999999999886 5799999999999999999999999999999999999999999996556999999999999
Q ss_pred cCCcccccccccccCcccCCCcccceEEEccchHHHHHHcCCCcCC-CCeeEEEEEecCCCCCCCCCCccEeEEcccccC
Q 002724 180 GNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRK-SGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMD 258 (888)
Q Consensus 180 gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~-~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~ 258 (888)
||+|++++.++++.|++|+.++|+|++|+||+|+|||++||+++.+ .++++|.|+|+|..+. ..+|++||||++||+
T Consensus 82 gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aGv~~~~~~~a~~V~~~~~d~~~~--~~~y~~sipl~~a~~ 159 (365)
T cd02111 82 GNRRSEMTKVKKVKGLQWGDGAISNAEWGGARLRDVLLDAGIPEDDSQGGLHVHFEGLDVDPT--GTPYGASIPLSKALD 159 (365)
T ss_pred CCCchhccccccccCCCccCCcEEeeEEECcCHHHHHHHhCCCCccCCCceEEEEEecCCCCC--CCCeeeeeEHHHhhC
Confidence 9999999999999999999999999999999999999999998521 2489999999996552 247999999999999
Q ss_pred cCCCeEEeeccCCccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccccCCCCCChhhcccccccccc
Q 002724 259 PARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAELANAEAWWYKP 338 (888)
Q Consensus 259 ~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~p~~~~~~~~~~~~~w~~~ 338 (888)
|..|+||||+||||||+++|||||||||||+||++|||||++|+|++++++||||.++|+++++.++.+.. . |. .
T Consensus 160 p~~~~lLA~~mNGepL~~~hG~PlRLvvPg~~G~~~vKWl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~~~~---~-~~-~ 234 (365)
T cd02111 160 PEADVLLAYEMNGTPLPRDHGFPLRVVVPGVVGARSVKWLDRIVVSDEESDSHWQQNDYKGFSPSVDWDNV---D-FS-K 234 (365)
T ss_pred cCCCeEEEehhcCCCCccccCccEEEEeCCeeEEEEEEEeeEEEEeccCCCCcceecceeecCCCCCcccc---C-cc-c
Confidence 76699999999999999999999999999999999999999999999999999999999998887765432 2 23 3
Q ss_pred cccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCcccce
Q 002724 339 EYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGKYWCW 418 (888)
Q Consensus 339 ~~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~~w~W 418 (888)
..+|++|++||+|+.|.+++.+... ..+.++|+||||||||++|+|||||+|||+||+.|+|..++.+.+++++|||
T Consensus 235 ~~~i~~~~v~S~I~~P~~~~~~~~~---~~~~~~i~G~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW 311 (365)
T cd02111 235 APAIQEMPVQSAICSPSVGAPVVTV---PPGKITVKGYAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAW 311 (365)
T ss_pred cCceeeeccCEEEecCCCCCeeecc---CCceEEEEEEEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEe
Confidence 3689999999999999999852110 1368999999999989999999999999999999999998887778899999
Q ss_pred EeeEEEEeeecCCCceEEEEEEEcCCCCCCCCC--CccccccccccceEEEEEE
Q 002724 419 CFWSLELEVLDLLGAKDIAVRAWDETLNTQPEK--LIWNVMGMMNNCWFRVKAN 470 (888)
Q Consensus 419 ~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~--~~wN~~G~~nn~~~~v~~~ 470 (888)
++|+++|+++ ..|+++|+|||||++||+||+. .+||++||+||+||||+|.
T Consensus 312 ~~W~~~~~~~-~~g~~~l~~RA~D~~G~~QP~~~~~~wn~~Gy~~n~~~~v~v~ 364 (365)
T cd02111 312 TLWEATVPVP-AGKEAEIIAKAVDSAYNVQPETVEPIWNLRGVLNNAWHRVKVV 364 (365)
T ss_pred EEEEEEEEeC-CCCeEEEEEEEEcCCCCcCCCCCCCCCCccceecceEEEEEee
Confidence 9999999875 3479999999999999999996 4699999999999999986
No 6
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.2e-89 Score=763.59 Aligned_cols=352 Identities=28% Similarity=0.455 Sum_probs=311.9
Q ss_pred ccCCCceeecCCCCCCCCCCccccccCCCCCCCCcceEecCC-CCC-CcCCCCcEEEEEeccCCceeecHHHHhhhCCCe
Q 002724 93 ERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHG-PVP-KASWVDWTIEVTGLVKRPARFTMDQLMHEFPSR 170 (888)
Q Consensus 93 ~r~~~l~~~~~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~-~vP-~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~ 170 (888)
++++.||++++ +|+|+|+|++.| .+++|||+++||||||. .+| .+|.++|+|+|+|+|++|++|||+||++.||++
T Consensus 14 ~~~~~li~~~~-~p~n~e~p~~~l-~~~~iTP~~~~fvr~h~~~~p~~~d~~~w~L~V~G~V~~p~~~tl~dL~~~~p~~ 91 (367)
T cd02114 14 PQKRPLIRLTT-RPPHLETPFSVF-NEGLITPNDAFFVRYHLAGIPLDIDPDAYTLTIDGKVRTPLTLSLAELKRIEPRF 91 (367)
T ss_pred CCCCCceEecC-CCCcCCCCHHHh-CcCCcCCCCcceEEcCCCCCCccccCCCcEEEEeEEeCCCeEEEHHHHhhcCCce
Confidence 44556888887 799999999876 56899999999999996 677 999999999999999999999999996546999
Q ss_pred EEEEEEEeecCCcccccccccccCcccCCCcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEe
Q 002724 171 EFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTS 250 (888)
Q Consensus 171 ~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~s 250 (888)
+++++|+|+||+|+.++ +++.|.+|+.|+++|++|+||+|+|||++||++ .++++|.|+|+|....++...|.+|
T Consensus 92 ~~~~~l~C~gN~r~~~~--~~~~G~~W~~G~i~~a~WtGV~L~dlL~~aG~~---~~a~~V~f~g~D~~~~~~~~~y~~s 166 (367)
T cd02114 92 EVVAVNQCSGNSRGFFQ--PRVQGAQLANGAMGNARWAGVPLKAVLAKAGVQ---DGARQVAFRGLDQPVLDVTPDFVKS 166 (367)
T ss_pred EEEEEEEECCCCccccc--ccccCCCcccceEEeeEEEeeEHHHHHHHcCCC---CCCcEEEEEecCCccccCCCCeEEe
Confidence 99999999999998864 789999999999999999999999999999998 4789999999995333333469999
Q ss_pred EEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccccCCCCCChhhcc
Q 002724 251 IRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAELAN 330 (888)
Q Consensus 251 ipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~p~~~~~~~~~ 330 (888)
|||++|+++ ++||||+||||||+++|||||||||||+||++|||||++|+|+++++++|||.++|++++..... .
T Consensus 167 ipl~~a~~~--~~lLAy~mNGepL~~~hG~PlRlvvPg~~g~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~---~ 241 (367)
T cd02114 167 LDIDHALDG--EVMLAWEMNGEPLPVLNGYPLRLVVPGFYATYWVKHLSHITVLDKEFDGFWASQAYRIPDNADAG---V 241 (367)
T ss_pred eeHHHhcCC--CeEEEEeeCCeECCHHhCCceEEEecCEeeeeeeEeeeEEEEEecCCCCceeecccccCCCcccc---c
Confidence 999999998 99999999999999999999999999999999999999999999999999999999985442111 0
Q ss_pred cccccccccccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCC
Q 002724 331 AEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPN 410 (888)
Q Consensus 331 ~~~~w~~~~~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~ 410 (888)
..+++.....+|++|+|||+|+.|.+++.+..+ ++++|+||||+| |++|+|||||+|||+||+.|+|..+..
T Consensus 242 ~~g~~~~~~~~i~~~~v~S~I~~P~~~~~~~~~-----~~~~i~G~A~~G-~~~I~rVEVS~DgG~tW~~A~l~~~~~-- 313 (367)
T cd02114 242 EPGTAPDRTAPINRFKVRSFITSLENGAIVAPA-----GELALRGIAFDG-GSGIRRVDVSADGGDSWTQATLGPDLG-- 313 (367)
T ss_pred CCcccccccceeeeeecceEEecCCCCCEecCC-----CeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEeCCCCC--
Confidence 123333344689999999999999999888753 789999999998 678999999999999999999976543
Q ss_pred CCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCccccccccccceEEEEE
Q 002724 411 KYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKA 469 (888)
Q Consensus 411 ~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nn~~~~v~~ 469 (888)
.|+|++|+++|+++ ..|+++|+|||||++||+||+..+||++||+||+|+||+|
T Consensus 314 ----~~aW~~W~~~~~~~-~~G~~~l~~RA~D~~G~~QP~~~~wn~~Gy~~n~~~~v~v 367 (367)
T cd02114 314 ----RFSFRGWKLTLDGV-KKGPLTLMVRATNNDGQTQPLRAPWNPGGYMRNVVERTRI 367 (367)
T ss_pred ----CcEEEEEEEEEECC-CCCcEEEEEEEEcCCCCCCCCCCccCcccEecceEEEEeC
Confidence 34999999999875 5899999999999999999999999999999999999986
No 7
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=6.9e-83 Score=698.87 Aligned_cols=319 Identities=33% Similarity=0.474 Sum_probs=287.8
Q ss_pred CccccccCCCCCCCCcceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCccccccccc
Q 002724 112 PLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQ 191 (888)
Q Consensus 112 p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~ 191 (888)
|+..| .++|||+++||||||+++|.+|.++|+|+|+|+|++|++|||+||+ +||+++++++|+|+||+|+++++. +
T Consensus 1 p~~~l--~~~iTP~~~~fvr~h~~~P~~d~~~w~L~V~G~V~~p~~ltl~dL~-~~p~~~~~~~l~C~gn~r~~~~~~-~ 76 (326)
T cd02113 1 PLQDL--EGIITPNGLHFERHHGGVPDIDPAQHRLMIHGMVKKPLVFTMDDLK-RFPSVSRIYFLECSGNGGTGWRGA-P 76 (326)
T ss_pred Chhhc--cCCcCCCcceEEECCCCCCccCccccEEEEEEecCCCeEeeHHHHh-cCCCEEEEEEEEecCCCccccccc-c
Confidence 45555 5799999999999999999999999999999999999999999995 799999999999999999999764 4
Q ss_pred ccCcccCCCcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCC
Q 002724 192 TIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNG 271 (888)
Q Consensus 192 ~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNG 271 (888)
++|++|+.++|+|+.|+||+|+|||++||++ .++.||.|+|+|. ..|.+||||++|| + ++||||+|||
T Consensus 77 ~~G~~W~~g~i~~a~W~GV~L~dlL~~ag~~---~~a~~V~~~g~D~------~~y~~sipl~~a~-~--~~lLAy~mNG 144 (326)
T cd02113 77 LPTAQYTHGMLSCSEWTGVPLSTLLEEAGVK---PGAKWLLAEGADA------AAMTRSIPLEKAL-D--DALVAYAQNG 144 (326)
T ss_pred cccccccccceeEEEEEeeEHHHHHHhcCCC---CCceEEEEEecCC------CceeEEeeHHHhC-c--CcEEEEeeCC
Confidence 8999999999999999999999999999998 4789999999982 2599999999999 4 8999999999
Q ss_pred ccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccccCCCCCChhhcccccccccccccccceeecEEE
Q 002724 272 ELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVI 351 (888)
Q Consensus 272 epL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~p~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I 351 (888)
|||+++|||||||||||+||+||||||++|+|++++++++||..+|+.+++. +++. .++.+|++||+|
T Consensus 145 epL~~~hG~PlRlvvPg~~G~~~vKWl~~I~v~~~~~~~~~~~~~Y~~~~~~---------~~~~---~~~~~~~v~S~I 212 (326)
T cd02113 145 EALRPENGYPLRLVVPGWEGNTNVKWLRRIEVGDQPWMTREETSKYTDLLPD---------GRAR---QFSFVMEAKSVI 212 (326)
T ss_pred eECChhhCceEEEEeCCccceeCceEeeEEEEEecccCCchhhccccccCCC---------Cccc---ccceEecccEEE
Confidence 9999999999999999999999999999999999999999999999975432 2222 245689999999
Q ss_pred eeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCcccceEeeEEEEeeecCC
Q 002724 352 TTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLL 431 (888)
Q Consensus 352 ~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~ 431 (888)
+.|.+++.++.+ ++++|+||||||+| +|+|||||+|||+||+.|+|..+..| |+|++|++.|... .
T Consensus 213 ~~P~~~~~~~~~-----~~~~i~G~A~sG~~-~I~rVEVS~DgG~tW~~A~l~~~~~~------~aW~~w~~~w~~~--~ 278 (326)
T cd02113 213 TSPSGGQRLREP-----GFHEISGLAWSGRG-RIRRVDVSFDGGRTWQDARLEGPVLP------KALTRFRLPWKWD--G 278 (326)
T ss_pred ecCCCCCEecCC-----CeEEEEEEEECCCC-CEEEEEEEcCCCCCceECccCCCCCC------CceEEEeEEEEcC--C
Confidence 999999998743 78999999999965 69999999999999999999988765 4999999999763 6
Q ss_pred CceEEEEEEEcCCCCCCCCCC-cccccc----ccccceEEEEEEEe
Q 002724 432 GAKDIAVRAWDETLNTQPEKL-IWNVMG----MMNNCWFRVKANVC 472 (888)
Q Consensus 432 g~~~i~vRA~D~~g~~QP~~~-~wN~~G----~~nn~~~~v~~~v~ 472 (888)
|.++|+|||||++||+||+.. +||++| |++|.++||+|.|.
T Consensus 279 g~~~i~~RA~D~~G~~QP~~~~~~n~~g~n~gy~~n~~~~~~v~~~ 324 (326)
T cd02113 279 RPAVLQSRATDETGYVQPTRAELRAVRGTNSIYHNNAIQSWRVDED 324 (326)
T ss_pred CeEEEEEEEEcCCCCCCCCCcccchhcccccceecceEEEEEEEcC
Confidence 899999999999999999963 466666 99999999999983
No 8
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=100.00 E-value=1.9e-80 Score=682.41 Aligned_cols=315 Identities=42% Similarity=0.732 Sum_probs=286.5
Q ss_pred cceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceE
Q 002724 127 LHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSV 206 (888)
Q Consensus 127 ~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~ 206 (888)
+||||||+++|.+|.++|+|+|+|+|++|++||++|| ++||+++++++|+|+||+|++|++.+ .|++|+.+++++++
T Consensus 1 ~~fvr~h~~~P~~d~~~w~L~V~G~v~~p~~~tl~dL-~~lp~~~~~~~l~C~gn~r~~~~~~~--~g~~W~~g~i~~~~ 77 (317)
T cd02110 1 LFFVRNHGGVPDIDPDAWRLEIHGLVERPLTLTLDDL-KRLPSVEVVATLECSGNGRGGFIPVR--SGAQWGHGAVGNAR 77 (317)
T ss_pred CeEEECCCCCCccCccccEEEEEeeeCCCcEEeHHHH-hhCCCeeEEEEEEcCCCCcccccccc--cCCccccCceeecE
Confidence 6999999999999999999999999999999999999 57999999999999999999998654 49999999999999
Q ss_pred EEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEc
Q 002724 207 WRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVII 286 (888)
Q Consensus 207 w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvv 286 (888)
|+||+|+|||++||+.+ ++++|.|+|+|..+.+...+|.++|||++++++ ++||||+||||||+++|||||||||
T Consensus 78 w~GV~L~dlL~~ag~~~---~a~~V~~~~~D~~~~~~~~~Y~~sipl~~~~~~--~~iLAy~mNGepL~~~hG~PlRlvv 152 (317)
T cd02110 78 WTGVPLKDLLEEAGVKP---GAKHVLFEGADVPPGEKAADYTRSVPLSKALDD--DALLAYEMNGEPLPPDHGYPLRLVV 152 (317)
T ss_pred EECcCHHHHHHHhCCCC---CCcEEEEEccCcccccCCCCeEEEEEHHHhcCC--CcEEEehhcCccCCHHhCCceEEEc
Confidence 99999999999999984 689999999996554444589999999999986 9999999999999999999999999
Q ss_pred cCccccccccceeEEEEEeeCCCcceeeeccccCCCCCChhhcccccccccccccccceeecEEEeeCCCCCeeccCccC
Q 002724 287 PGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWT 366 (888)
Q Consensus 287 Pg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~p~~~~~~~~~~~~~w~~~~~~i~~~~v~S~I~~p~~~~~~~~~~~~ 366 (888)
||+||+||||||++|+|+++++++|||.++|+++|+.+++ ++.....++++|++||+|+.|.+++.+..
T Consensus 153 Pg~~G~~~vKwl~~I~v~~~~~~g~w~~~~Y~~~~~~~~~-------~~~~~~~~~~~~~~~s~I~~p~~~~~~~~---- 221 (317)
T cd02110 153 PGWYGARSVKWLRRIEVTDQPSDGYWQTRDYTVPPPDVDA-------VGGKARRPIGEMPVKSVITSPSPGAELVS---- 221 (317)
T ss_pred CCceeeEeeEEeeEEEEEecCCCCceEccccccCCCcccc-------cCCCccceeEEEccCEEEeccCCCCEecC----
Confidence 9999999999999999999999999999999998776543 22334458999999999999999976654
Q ss_pred CCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCC
Q 002724 367 AQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLN 446 (888)
Q Consensus 367 ~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~ 446 (888)
+++++|+||||+| |++|+|||||+|||+||+.|+|..+. ++.|||++|+++|+++ +|+|+|+|||+|++||
T Consensus 222 -~~~~~i~G~A~~g-~~~I~rVEvS~DgG~tW~~A~l~~~~-----~~~~~W~~W~~~~~~~--~G~~~l~vRA~D~~g~ 292 (317)
T cd02110 222 -GGRVEIGGVAWSG-GRGIRRVEVSLDGGRTWQEARLEGPL-----AGPRAWRQWELDWDLP--PGEYELVARATDSTGN 292 (317)
T ss_pred -CCeEEEEEEEEcC-CCCEEEEEEEeCCCCcceEeEccCCc-----CCCCEEEEEEEEEEcC--CCcEEEEEEEECCCCC
Confidence 3789999999998 67899999999999999999998775 2357999999999975 8999999999999999
Q ss_pred CCCCCCccc--cccccccceEEEEE
Q 002724 447 TQPEKLIWN--VMGMMNNCWFRVKA 469 (888)
Q Consensus 447 ~QP~~~~wN--~~G~~nn~~~~v~~ 469 (888)
+||+...|| ++||+||+||||+|
T Consensus 293 ~QP~~~~~~~n~~g~~~n~~~~v~v 317 (317)
T cd02110 293 VQPERAEWNWNPGGYGNNHWHRVQV 317 (317)
T ss_pred cCCCcccccccCCCceeeeEEEEEC
Confidence 999987755 59999999999986
No 9
>cd02107 YedY_like_Moco YedY_like molybdopterin cofactor (Moco) binding domain, a subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. Escherichia coli YedY has been propsed to form a heterodimer, consisting of a soluble catalytic subunit termed YedY, which is likely membrane-anchored by a heme-containing trans-membrane subunit YedZ. Preliminary results indicate that YedY may represent a new type of membrane-associated bacterial reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=2.7e-46 Score=385.11 Aligned_cols=189 Identities=28% Similarity=0.399 Sum_probs=164.3
Q ss_pred CCCcceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCccc
Q 002724 124 PVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVS 203 (888)
Q Consensus 124 P~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~ 203 (888)
-+.+|++|||+ .+|.++|+|+|+|+|++|++|||+||++.||+++++++|+|+++ |+.
T Consensus 11 ~~~~~~~~~~~---~vd~~~w~L~V~GlV~~p~~ltl~eL~~~lP~~~~~~~l~Cv~g---------------Ws~---- 68 (218)
T cd02107 11 TGKDDPARNAG---NLPTRPWTVSVSGLVKKPKTLDIDDLMKTFPLEERIYRFRCVEG---------------WSM---- 68 (218)
T ss_pred CCCccHHHhcC---CCCcCCeEEEEEeEcCCCeEEEHHHHHhcCCCeEEEEEEEEeCC---------------Ccc----
Confidence 35678899985 56889999999999999999999999534999999999999975 663
Q ss_pred ceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCC---CCCCC------CCCccEeEEcccccCcCCCeEEeeccCCccC
Q 002724 204 TSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAED---LPGGG------GSKYGTSIRKEVGMDPARDIILAYMQNGELL 274 (888)
Q Consensus 204 ~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~---~~~~~------~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL 274 (888)
+++|+||+|+|||++||++ .+|+||.|+|+|. .+++. ..+|.+||||++||++ ++||||+||||||
T Consensus 69 ~a~W~GV~L~dlLe~ag~~---~~A~~V~f~~~d~~~~~~g~~g~~~~~~~~Y~~slpl~~Al~~--~~LLAy~mNGepL 143 (218)
T cd02107 69 VVPWVGFPLAALLARAEPT---SEAKYVRFTTLLDKEQMPGQSGLFGVLPWPYVEGLRLDEAMHP--LTLLAVGLYGEAL 143 (218)
T ss_pred eeEEEeeEHHHHHHHcCCC---CCCCEEEEEecCccccccCCccccccccCCcccceeHHHhhCc--ccEEEeeeCCcCC
Confidence 5899999999999999998 4689999999973 22221 1259999999999998 8999999999999
Q ss_pred CCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeee------ccccCCCCCChhhcccccccccccccccceeec
Q 002724 275 SPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYK------DNRVLPSHVDAELANAEAWWYKPEYIINELNIN 348 (888)
Q Consensus 275 ~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~------dyr~~p~~~~~~~~~~~~~w~~~~~~i~~~~v~ 348 (888)
|++|||||||||||+||++|||||++|+|+++++.|||+.. .|+..|+.++ .+..+|.++
T Consensus 144 p~~HG~PlRLVVPg~yG~ksvKWL~~Iev~~~~~~GyWe~~~~~~~~~y~~~~~~~~--------------~~~~~~~~~ 209 (218)
T cd02107 144 PKQNGAPIRLVVPWKYGFKSIKSIVKIEFTKEQPPTTWNLAAPDEYGFYANVNPSVD--------------HPRWSQATE 209 (218)
T ss_pred cHhhCCceEEEeCCeeeeEcceeeeEEEEEeCCCCCcccccCcccccccccCCCCCC--------------CCcccccee
Confidence 99999999999999999999999999999999999999998 7777665543 146688899
Q ss_pred EEEee
Q 002724 349 SVITT 353 (888)
Q Consensus 349 S~I~~ 353 (888)
|.|..
T Consensus 210 ~~i~~ 214 (218)
T cd02107 210 RRIGE 214 (218)
T ss_pred eeecc
Confidence 99953
No 10
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=5.2e-44 Score=382.43 Aligned_cols=229 Identities=54% Similarity=0.941 Sum_probs=212.1
Q ss_pred CceecCCCCeeeEEEEEEEEecCceeeeeeccCCCCceEeee--------------eeeeeeecccCCCCCcEEEEEEEE
Q 002724 639 RSVALVPREKIPCKLVEKILISHDVRLFRFALPQEDQVLGLP--------------LCMRAYTPTSSVDEVGHFDLVVKI 704 (888)
Q Consensus 639 ~~v~l~p~~~~~~~Lv~k~~ls~dv~~f~f~lp~pGQ~l~Lp--------------~~~R~YTp~S~~~~~g~leL~IK~ 704 (888)
..+..++..|++++|++++.+|||+++|+|.+|.+.+.++|| .+.|+|||.|.+.+.|+|+|+||.
T Consensus 42 ~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~ 121 (286)
T KOG0534|consen 42 KKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKV 121 (286)
T ss_pred cccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEe
Confidence 445566778999999999999999999999999865555554 789999999999888999999999
Q ss_pred EeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCC
Q 002724 705 YFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDP 784 (888)
Q Consensus 705 y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~ 784 (888)
|+ +|.||+||++|++||.|+|+||.|++.|. +...+++.|||||||||||+|+|+++++++
T Consensus 122 Y~---------~G~mS~~l~~LkiGd~ve~rGP~G~~~~~----------~~~~~~l~miAgGtGItPmlqii~~il~~~ 182 (286)
T KOG0534|consen 122 YP---------KGKMSQHLDSLKIGDTVEFRGPIGEFKYD----------PQKAKHLGMIAGGTGITPMLQLIRAILKDP 182 (286)
T ss_pred cc---------CCcccHHHhcCCCCCEEEEecCccceEec----------CCCcceEEEEecccchhhHHHHHHHHhcCC
Confidence 94 59999999999999999999999999998 455899999999999999999999999999
Q ss_pred CCCceEEEEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHhhCCCCCC-CcEEEEECC
Q 002724 785 EDETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSG-DTLALACGP 862 (888)
Q Consensus 785 ~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~-~~~vyvCGP 862 (888)
+|.++|+|+|+|++++||++++||+.++.+++ +|+++|+++++ .+.|.+.+|+|++++|+++++.+.+ ++.++||||
T Consensus 183 ~d~tki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~-~~~w~~~~g~It~~~i~~~l~~~~~~~~~~liCGP 261 (286)
T KOG0534|consen 183 EDTTKISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQP-PEIWDGSVGFITKDLIKEHLPPPKEGETLVLICGP 261 (286)
T ss_pred CCCcEEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCC-cccccCccCccCHHHHHhhCCCCCCCCeEEEEECC
Confidence 99999999999999999999999999999996 99999999999 7899999999999999999988766 699999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCEEEC
Q 002724 863 PPMIQFAVQPNLEKMNYDTKDSLLVF 888 (888)
Q Consensus 863 p~mi~~av~~~L~~~Gv~~~~~I~~F 888 (888)
|+|++.++..+|+++||+ ++++|.|
T Consensus 262 p~m~~~~~~~~le~Lg~~-~~~vf~f 286 (286)
T KOG0534|consen 262 PPMINGAAQGNLEKLGYN-EDQVFVF 286 (286)
T ss_pred HHHHhHHHHHHHHhcCCC-hHhEEeC
Confidence 999986799999999999 9999987
No 11
>PF00174 Oxidored_molyb: Oxidoreductase molybdopterin binding domain; InterPro: IPR000572 A number of different eukaryotic oxidoreductases that require and bind a molybdopterin cofactor have been shown [] to share a few regions of sequence similarity. These enzymes include xanthine dehydrogenase (1.1.1.204 from EC), aldehyde oxidase (1.2.3.1 from EC), nitrate reductase (1.7.1.1 from EC), and sulphite oxidase (1.8.3.1 from EC). The multidomain redox enzyme NAD(P)H:nitrate reductase (NR) catalyses the reduction of nitrate to nitrite in a single polypeptide electron transport chain with electron flow from NAD(P)H-FAD-cytochrome b5-molybdopterin-NO(3). Three forms of NR are known, an NADH-specific enzyme found in higher plants and algae (1.7.1.1 from EC); an NAD(P)H-bispecific enzyme found in higher plants, algae and fungi (1.7.1.2 from EC); and an NADPH-specific enzyme found only in fungi (1.7.1.3 from EC) []. The mitochondrial enzyme sulphite oxidase (sulphite:ferricytochrome c oxidoreductase; 1.8.2.1 from EC) catalyses oxidation of sulphite to sulphate, using cytochrome c as the physiological electron acceptor. Sulphite oxidase consists of two structure/function domains, an N-terminal haem domain, similar to cytochrome b5; and a C-terminal molybdopterin domain [].; GO: 0009055 electron carrier activity, 0055114 oxidation-reduction process; PDB: 1XDY_I 1XDQ_E 2A9A_B 3R19_A 2A9D_A 3HBQ_A 2A9C_B 3HBG_A 2A9B_A 1SOX_B ....
Probab=100.00 E-value=1.7e-42 Score=349.87 Aligned_cols=168 Identities=44% Similarity=0.806 Sum_probs=144.3
Q ss_pred ecCCCCCCcCC-CCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceEEEc
Q 002724 131 RNHGPVPKASW-VDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRG 209 (888)
Q Consensus 131 rnh~~vP~~d~-~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~G 209 (888)
|||+++|.++. ++|+|+|+|+|++|++||++||+ +||+++++++++|++|+|. |++|+.++++++.|+|
T Consensus 1 r~~~~~p~~~~~~~~~l~V~G~v~~~~~ltl~dL~-~lp~~~~~~~~~c~~~~~~---------~~~w~~~~i~~~~~~G 70 (169)
T PF00174_consen 1 RNHGPVPSIDDRESWTLTVSGLVENPLTLTLADLK-ALPQVTQTVTLHCVGNRRA---------GFPWSAGAIGNAEWTG 70 (169)
T ss_dssp EESSSB-EESTCTT-EEEEEESBSSEEEEEHHHHH-HS-EEEEEEEEEETTTTHH---------SHHCCSTSEEEEEEEE
T ss_pred CCcCCCCccCCCCCEEEEEEeecCCceEecHHHHh-CCcCeEEEEEEEecCCCcc---------CccccccceeeeeeEE
Confidence 89999999996 99999999999999999999995 8999999999999999986 8899999999999999
Q ss_pred cchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEccCc
Q 002724 210 VPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGC 289 (888)
Q Consensus 210 v~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvPg~ 289 (888)
|+|+|||++||++ .++++|.|+|.|..+. ...+|.++||++++++. ++||||+|||+||+.+||+|+|||+|++
T Consensus 71 V~L~dlL~~ag~~---~~a~~V~~~~~D~~~~-~~~gY~~~l~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlvvP~~ 144 (169)
T PF00174_consen 71 VPLSDLLEKAGIK---PDAKYVVFTGADGYPM-THDGYSVSLPLEDALEE--DVILAYEMNGEPLPPEHGGPLRLVVPGK 144 (169)
T ss_dssp EEHHHHHHHHTB----TT-EEEEEEESCETTC-TTSSEEEEEEHHHHHST--CSEEEEEETTEE--GGGTTT-EEE-TTB
T ss_pred EcHHHHHHHcCCC---CCccEEEEEEcCCCcc-cCCCeEEEEEHHHhhcC--CeEEEEccCCccccccccCcEEEecCCe
Confidence 9999999999997 4689999999993221 12379999999999996 9999999999999999999999999999
Q ss_pred cccccccceeEEEEEeeCCCcceee
Q 002724 290 IGGRMVKWLKRIIVTTQESDNYYHY 314 (888)
Q Consensus 290 ~G~r~vKWl~~I~v~~~~~~~~~~~ 314 (888)
+|+||||||++|+|++++++||||.
T Consensus 145 ~g~~~vKwv~~Ie~~~~~~~g~we~ 169 (169)
T PF00174_consen 145 YGYRSVKWVSRIEVTDEESPGYWEE 169 (169)
T ss_dssp BGGGS-BSEEEEEEESS---SHHHH
T ss_pred EccCCceECCEEEEEeCCCCCCccC
Confidence 9999999999999999999999973
No 12
>cd02108 bact_SO_family_Moco bacterial subgroup of the sulfite oxidase (SO) family of molybdopterin binding domains. This domain is found in a variety of oxidoreductases. Common features of all known members of this family, like sulfite oxidase and nitrite reductase, are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=6.3e-42 Score=348.56 Aligned_cols=169 Identities=30% Similarity=0.583 Sum_probs=153.7
Q ss_pred CCC-CCCcceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCC
Q 002724 121 FIT-PVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGA 199 (888)
Q Consensus 121 ~iT-P~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~ 199 (888)
.|| |+.+||.|+|.. |.++|+|+|+|+|++|++||++|| ++||+++++++++|+++ |+.
T Consensus 9 ~~~~p~~~~y~~~~~~----~~~~w~l~V~G~v~~p~~ltl~dL-~~lp~~~~~~~~~Cv~g---------------ws~ 68 (185)
T cd02108 9 GIRKPEALAYKALEAN----DFADYRLEVGGLVEHPLSLSLEEL-RALPQRTQITRHICVEG---------------WSA 68 (185)
T ss_pred hccCCCccceeccCCC----CCCCEEEEEEcccCCCEEEEHHHH-hCCCCEEEEEEEEEcCC---------------Cce
Confidence 466 999999999874 779999999999999999999999 57999999999999975 542
Q ss_pred CcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCC
Q 002724 200 AGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHG 279 (888)
Q Consensus 200 ~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG 279 (888)
+++|+||+|+|||++||+. .++++|.|+|+|..+.. .+|.++|||++++++ ++||||+||||||+++||
T Consensus 69 ----~~~w~Gv~L~dlL~~ag~~---~~a~~V~~~a~d~~~~~--~~Y~~sipl~~~~~~--~~iLA~~~nGepL~~~hG 137 (185)
T cd02108 69 ----IGKWGGVPLRTILELVGPL---PEAKYVVFKCADDFAGG--DRYYESIDMASALHP--QTLLAYEMNGQPLPIKNG 137 (185)
T ss_pred ----EEEEEEEEHHHHHHHhCCC---CCCcEEEEEecCcCCCC--CCeEEEEEHHHhcCC--CcEEEEeeCCeECChhcC
Confidence 3699999999999999998 46789999999854221 379999999999998 899999999999999999
Q ss_pred CcEEEEccCccccccccceeEEEEEeeCCC------cceeeeccccC
Q 002724 280 FPVRVIIPGCIGGRMVKWLKRIIVTTQESD------NYYHYKDNRVL 320 (888)
Q Consensus 280 ~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~------~~~~~~dyr~~ 320 (888)
|||||||||+||+||||||++|+|++++++ |||+.++|+++
T Consensus 138 ~PlRLvvPg~~G~k~vKwl~~I~~~~~~~~~~~~~~g~We~~gy~~~ 184 (185)
T cd02108 138 APLRLRVETQLGYKQAKWVTEIELVNDLPGIGGGKGGYWEDQGYNWF 184 (185)
T ss_pred ceEEEEcCCcccccCceEccEEEEEeccCccccCCCCccccCCcccc
Confidence 999999999999999999999999999999 99999999864
No 13
>cd02109 arch_bact_SO_family_Moco bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate. The specific function of this subgroup is unknown.
Probab=100.00 E-value=4.2e-41 Score=341.81 Aligned_cols=162 Identities=27% Similarity=0.494 Sum_probs=153.8
Q ss_pred CcceEecCCCCCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccce
Q 002724 126 PLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTS 205 (888)
Q Consensus 126 ~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a 205 (888)
..|||++|+.+|.++.++|+|+|+|+|++|++||++|| ++||+++++++++|+++ |+ ++++
T Consensus 9 ~~~~~~~~~~~p~~~~~~~~L~V~G~v~~p~~ltl~dL-~~lp~~~~~~~~~C~~~---------------w~---~~~~ 69 (180)
T cd02109 9 EKFPVLDAGDVPEVDLEKWRLRVTGLVENPLSLTYEDL-LALPQTEYTADFHCVTG---------------WS---KLDV 69 (180)
T ss_pred CCccEeccCCCCcccCCCeEEEEEeecCCceEEEHHHH-hCCCCEEEEEEEEecCC---------------Cc---ccCc
Confidence 46999999999999999999999999999999999999 57999999999999986 65 4568
Q ss_pred EEEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEE
Q 002724 206 VWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVI 285 (888)
Q Consensus 206 ~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlv 285 (888)
+|+||+|+|||++||+.+ ++++|.|+|+| +|.++||+++++++ ++||||+|||+||+.+||||+|||
T Consensus 70 ~w~Gv~L~dlL~~ag~~~---~a~~V~~~a~D--------gY~~~ipl~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlv 136 (180)
T cd02109 70 VWEGVSLKDLLEAARPDP---EATFVMAHSYD--------GYTTNLPLEDLLRE--DSLLATKMDGEPLPPEHGGPARLV 136 (180)
T ss_pred EEEeeEHHHHHHHcCCCC---CCeEEEEEecC--------CceEEeEHHHhcCC--CeEEEEeeCCeECChhcCceEEEE
Confidence 999999999999999983 68999999999 79999999999987 899999999999999999999999
Q ss_pred ccCccccccccceeEEEEEeeCCCcceeeecccc
Q 002724 286 IPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRV 319 (888)
Q Consensus 286 vPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~ 319 (888)
+||++|+||||||++|+|++++++|||+.++|+.
T Consensus 137 ~P~~~G~k~vKwl~~I~~~~~~~~g~we~~gy~~ 170 (180)
T cd02109 137 VPHLYFWKSAKWLRGIEFLDEDEPGFWERRGYHE 170 (180)
T ss_pred eCCeeeeeCceECCEEEEEeCCCCCcccccCcCC
Confidence 9999999999999999999999999999999987
No 14
>PRK05363 TMAO/DMSO reductase; Reviewed
Probab=100.00 E-value=1.1e-39 Score=350.70 Aligned_cols=174 Identities=27% Similarity=0.434 Sum_probs=155.6
Q ss_pred CCCCCCcceEecCCC------CCCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccC
Q 002724 121 FITPVPLHYVRNHGP------VPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIG 194 (888)
Q Consensus 121 ~iTP~~~~yvrnh~~------vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G 194 (888)
.+|+.+.||.-.... ++.++.++|+|+|+|+|++|++||++||++.||+++++++|+|+++
T Consensus 73 ~~t~ynnFYef~t~k~dp~~~~~~~~~~~W~L~V~G~V~kP~~ltldDL~~~~P~~eri~~l~CVeg------------- 139 (319)
T PRK05363 73 DVTTYNNFYEFGTDKADPARNAGSLKTDPWTVKIDGEVEKPGTLDIDDLLKLFPLEERIYRLRCVEA------------- 139 (319)
T ss_pred HcCCCCCeEEecCCcCChhHhcCcCCCCCeEEEEeeecCCCeEEEHHHHHhcCCCeEEEEEEEEcCC-------------
Confidence 489999999886653 3559999999999999999999999999755999999999999976
Q ss_pred cccCCCcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCC---CCCCC----CCCccEeEEcccccCcCCCeEEee
Q 002724 195 FNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAED---LPGGG----GSKYGTSIRKEVGMDPARDIILAY 267 (888)
Q Consensus 195 ~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~---~~~~~----~~~Y~~sipl~~a~~~~~dvlLAy 267 (888)
|+. ++.|+||+|+|||++||++ .+|+||.|++.++ ++++. +.+|.++|||++||++ ++||||
T Consensus 140 --Ws~----~~~W~GvpL~dLLe~agp~---~~AkyV~f~s~~d~~~~~g~~~~~~~~pY~~~LpL~eAm~p--~tlLA~ 208 (319)
T PRK05363 140 --WSM----VIPWIGFPLAKLLKRVEPT---SNAKYVAFETLYDPEQMPGQRSRFLDWPYVEGLRLDEAMHP--LTLLAV 208 (319)
T ss_pred --Cce----eeEEEeeEHHHHHHHcCCC---CCCcEEEEEecCccccccCCcccccCCCeeccccHHHHhCc--cceehh
Confidence 652 6899999999999999998 4789999999863 34332 1259999999999998 899999
Q ss_pred ccCCccCCCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccc
Q 002724 268 MQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNR 318 (888)
Q Consensus 268 ~mNGepL~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr 318 (888)
+|||||||++|||||||||||+||+||||||.+|+|++++..+||+..+|+
T Consensus 209 ~mnGepLp~qhG~PlRLVVPg~YG~KsvKWI~~Ie~~~~~~~g~We~~~~~ 259 (319)
T PRK05363 209 GLYGKTLPNQNGAPIRLVVPWKYGFKSIKSIVRIRLTEEQPPTTWNLLAPN 259 (319)
T ss_pred hhCCcCCchhhCCceEEEeCCceeeecceeeeEEEEEeCCCCCchhccCcc
Confidence 999999999999999999999999999999999999999999999988764
No 15
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=100.00 E-value=2.7e-38 Score=305.04 Aligned_cols=128 Identities=50% Similarity=0.899 Sum_probs=104.5
Q ss_pred ccccceeecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCc-ccce
Q 002724 340 YIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGK-YWCW 418 (888)
Q Consensus 340 ~~i~~~~v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~-~w~W 418 (888)
++|++|+|||+|++|.+++.|+.+ +++|+|+||||+|+|++|+|||||+|||+||+.|+|..+..+.++|+ .|||
T Consensus 2 ~~i~~~~v~S~I~~P~~~~~v~~~----~~~v~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW 77 (131)
T PF03404_consen 2 YPINEMPVNSVITSPSDGETVKAG----DGTVTIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAW 77 (131)
T ss_dssp CB--B---EEEEEESBTTEEEESE----SEEEEEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-
T ss_pred cchhhcCCCEEEEecCCCCEEccC----CcEEEEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCccc
Confidence 689999999999999999999863 26999999999999989999999999999999999999988877775 7899
Q ss_pred EeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCccccccccccceEEEEEEE
Q 002724 419 CFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKANV 471 (888)
Q Consensus 419 ~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nn~~~~v~~~v 471 (888)
++|+++|+++++.|+++|+|||||++|++||++..||++|||||+||||+|+|
T Consensus 78 ~~W~~~~~~~~~~G~~~i~~RA~D~~G~~QP~~~~wN~~G~~~n~~~~v~v~v 130 (131)
T PF03404_consen 78 RLWEYDWPPPSLPGEYTIMVRATDESGNVQPEEPIWNPRGYMNNGWHRVKVTV 130 (131)
T ss_dssp EEEEEEEEECSHCCEEEEEEEEEETTS-B--SCHHCHTT-SS--SSEEEEEEE
T ss_pred ceeeeccCcCccccceEEEEEEeecccccCCCcccccccCceeccEEEEEEEE
Confidence 99999999976589999999999999999999999999999999999999998
No 16
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=1.8e-35 Score=324.98 Aligned_cols=249 Identities=47% Similarity=0.855 Sum_probs=212.6
Q ss_pred CCceecCCCCeeeEEEEEEEEecCceeeeeeccCC--------CCceEeee----------eeeeeeecccCCCCCcEEE
Q 002724 638 TRSVALVPREKIPCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP----------LCMRAYTPTSSVDEVGHFD 699 (888)
Q Consensus 638 ~~~v~l~p~~~~~~~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp----------~~~R~YTp~S~~~~~g~le 699 (888)
.++..|++..+..++|++++.+++|++.|+|+++. +|||+.|. ...|+|||+|.+.+.+.++
T Consensus 23 ~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~ 102 (300)
T PTZ00319 23 SPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVD 102 (300)
T ss_pred CCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEE
Confidence 35678899999999999999999999999998742 69997775 2469999999988889999
Q ss_pred EEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCC-----CCCceEEEEECCcCHHHHH
Q 002724 700 LVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKP-----KFAKKLAMLAGGTGITPIY 774 (888)
Q Consensus 700 L~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~-----~~~~~ivmIAGGTGITP~~ 774 (888)
|+||.+....|+.+|++|.+|++|+.+++||.|.|+||+|.|.+.+++.+.++... ...++++|||||||||||+
T Consensus 103 ~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~ 182 (300)
T PTZ00319 103 FLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPML 182 (300)
T ss_pred EEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHH
Confidence 99999854556667778999999999999999999999999999877766554221 2346899999999999999
Q ss_pred HHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCC--
Q 002724 775 QIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGS-- 852 (888)
Q Consensus 775 ~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~-- 852 (888)
+|++++++...+.++++|+|++|+.+|++++++|++++ ++++++++++++++..+.|.+..|++++.++++.++...
T Consensus 183 sml~~l~~~~~~~~~i~liyg~r~~~dl~~~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~~~~~~~~~ 261 (300)
T PTZ00319 183 QIIHAIKKNKEDRTKVFLVYANQTEDDILLRKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEMLRAHLPVPDPQ 261 (300)
T ss_pred HHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHHHhhcCCcccc
Confidence 99999987645567999999999999999999999954 568999999998743667988999999998888876322
Q ss_pred ----CCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEEC
Q 002724 853 ----GDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 888 (888)
Q Consensus 853 ----~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~F 888 (888)
.+..+|+|||++|++.+++..|+++|++ +++||.|
T Consensus 262 ~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~~-~~~i~~~ 300 (300)
T PTZ00319 262 NSGIKKVMALMCGPPPMLQMAVKPNLEKIGYT-ADNMFTF 300 (300)
T ss_pred ccccCCeEEEEECCHHHHHHHHHHHHHHcCCC-HHHEEEC
Confidence 3578999999999975678999999999 9999998
No 17
>cd00321 SO_family_Moco Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=100.00 E-value=4.4e-35 Score=292.10 Aligned_cols=155 Identities=52% Similarity=0.953 Sum_probs=141.4
Q ss_pred eEecCCCC-CCcCCCCcEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceEE
Q 002724 129 YVRNHGPV-PKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVW 207 (888)
Q Consensus 129 yvrnh~~v-P~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w 207 (888)
|+|||... |.+|.++|+|+|+|+|++|++||++|| ++||++++.++++|++|+ |+.+.++++.|
T Consensus 1 ~~~~~~~~~~~~d~~~w~l~v~G~v~~~~~~tl~eL-~~lp~~~~~~~~~c~~n~--------------~~~~~~~~~~~ 65 (156)
T cd00321 1 FVRNHGGVPPEIDPDDWRLEVDGLVEKPLSLTLDDL-KALPQVEVIATLHCVGNR--------------WGGGAVSNAEW 65 (156)
T ss_pred CeeCCCCCCCccCCCCeEEEEEeecCCCeEEEHHHH-hcCCCEEEEEEEEECCCC--------------CCCccEeccEE
Confidence 67999765 569999999999999999999999999 579999999999999996 88888889999
Q ss_pred EccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEcc
Q 002724 208 RGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIP 287 (888)
Q Consensus 208 ~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvP 287 (888)
+||+|+|||++||+.+ ++++|.|++.|+. +..+|.++||+++++++ ++||||+|||+||+.+||+|+|||+|
T Consensus 66 ~Gv~L~~lL~~ag~~~---~~~~v~~~a~d~~---~~dgY~~~i~~~~~~~~--~~iLA~~~nG~pL~~~~GgPlrlv~P 137 (156)
T cd00321 66 TGVPLRDLLEEAGPKP---GARYVVFEGADDP---GGDGYTTSLPLEKALDP--DVLLAYEMNGEPLPPDHGFPLRLVVP 137 (156)
T ss_pred EEEEHHHHHHHcCCCC---CCeEEEEEeeCCC---CCCCEEEEEEHHHhhCC--CCEEEeeeCCeECchhhCCceEEEcC
Confidence 9999999999999983 6899999999522 11289999999999986 89999999999999999999999999
Q ss_pred CccccccccceeEEEEEee
Q 002724 288 GCIGGRMVKWLKRIIVTTQ 306 (888)
Q Consensus 288 g~~G~r~vKWl~~I~v~~~ 306 (888)
+.+|+||||||++|+|+++
T Consensus 138 ~~~g~k~vK~v~~Iev~~~ 156 (156)
T cd00321 138 GLYGWKSVKWLRRIEVTDE 156 (156)
T ss_pred CceeeEcceeeeEEEEEcC
Confidence 9999999999999999863
No 18
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=3.3e-33 Score=309.20 Aligned_cols=223 Identities=35% Similarity=0.616 Sum_probs=189.9
Q ss_pred CCCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee---------eeeeeeecccCCCCCcEEEEEEEEEeec
Q 002724 645 PREKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP---------LCMRAYTPTSSVDEVGHFDLVVKIYFKG 708 (888)
Q Consensus 645 p~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp---------~~~R~YTp~S~~~~~g~leL~IK~y~~~ 708 (888)
..+|++++|++++.+|+|++.|+|++|. +|||+.+. .+.|+|||+|.+.+.+.|+|+||++
T Consensus 49 ~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~--- 125 (325)
T PTZ00274 49 SQRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRK--- 125 (325)
T ss_pred CCceEEEEEEEEEEeCCCeEEEEEeCCcccccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEc---
Confidence 4579999999999999999999998854 69998763 3579999999998788999999996
Q ss_pred CCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCC----
Q 002724 709 VHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDP---- 784 (888)
Q Consensus 709 ~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~---- 784 (888)
+ +|.+|.+|..+++||+|.|+||.|.|.+. ....++++|||||||||||++||++++...
T Consensus 126 -----~-~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~----------~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~ 189 (325)
T PTZ00274 126 -----K-DGLMTNHLFGMHVGDKLLFRSVTFKIQYR----------PNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSG 189 (325)
T ss_pred -----C-CCcccHHHhcCCCCCEEEEeCCeeecccC----------CCCCceEEEEeCCcchhHHHHHHHHHHhcccccc
Confidence 2 79999999889999999999998876544 234579999999999999999999998752
Q ss_pred -CCCceEEEEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccc-cCCccccccccCHHHHHhhCCCCC-CCcEEEEE
Q 002724 785 -EDETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSI-KEGWQYSTGFITEAILREHVPEGS-GDTLALAC 860 (888)
Q Consensus 785 -~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~-~~~w~~~~Grv~~~~L~~~l~~~~-~~~~vyvC 860 (888)
.+.++|+|+|++|+.+|+++++||++|+++++ +|+++++++++. .+.|.+..|+|++++|.+.++... .+..+|+|
T Consensus 190 ~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~~~~~~~~~~~~~vylC 269 (325)
T PTZ00274 190 EVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVRRTMPAPEEKKKIIMLC 269 (325)
T ss_pred cCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHHHhcCCCccCCcEEEEe
Confidence 24569999999999999999999999999885 799999998642 356888999999988888775432 34689999
Q ss_pred CChhhHHHHHHH------------------------------HHHhcCCCCCCCEEEC
Q 002724 861 GPPPMIQFAVQP------------------------------NLEKMNYDTKDSLLVF 888 (888)
Q Consensus 861 GPp~mi~~av~~------------------------------~L~~~Gv~~~~~I~~F 888 (888)
||++||+ ++.. +|+++|++ .++++.|
T Consensus 270 GPp~Mm~-av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (325)
T PTZ00274 270 GPDQLLN-HVAGTPMGTMSSMSSGMNIQPMAPDLNNLVSLGGILGELGYD-NDDVYRF 325 (325)
T ss_pred CCHHHHH-HhcCCCcccccccccccccccccccccccccccchHHHhCCC-hhheecC
Confidence 9999998 6632 58889998 8888876
No 19
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=5.7e-33 Score=302.84 Aligned_cols=229 Identities=22% Similarity=0.431 Sum_probs=192.6
Q ss_pred CCCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee---e--------------------------------e
Q 002724 645 PREKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP---L--------------------------------C 682 (888)
Q Consensus 645 p~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp---~--------------------------------~ 682 (888)
+.+...++|++++.+++|++.|+|+++. ||||+.|. . .
T Consensus 6 ~~~~~~~~v~~~~~~~~d~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (283)
T cd06188 6 GAKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPV 85 (283)
T ss_pred ccceEEEEEEEcccccchhhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCcc
Confidence 4567789999999999999999999864 69998775 1 2
Q ss_pred eeeeecccCCCCCcEEEEEEEEEeecC-CCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceE
Q 002724 683 MRAYTPTSSVDEVGHFDLVVKIYFKGV-HPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKL 761 (888)
Q Consensus 683 ~R~YTp~S~~~~~g~leL~IK~y~~~~-~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~i 761 (888)
.|+|||+|.+.+.+.++|+||.+.... .+++| +|.+|++|..+++|++|.|+||+|.|.+. ...+++
T Consensus 86 ~R~ySias~p~~~~~l~l~vk~~~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~-----------~~~~~~ 153 (283)
T cd06188 86 SRAYSLANYPAEEGELKLNVRIATPPPGNSDIP-PGIGSSYIFNLKPGDKVTASGPFGEFFIK-----------DTDREM 153 (283)
T ss_pred ccccCcCCCCCCCCeEEEEEEEeccCCccCCCC-CceehhHHhcCCCCCEEEEECcccccccc-----------CCCCcE
Confidence 499999999887789999999863210 01245 69999999889999999999999998754 345799
Q ss_pred EEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccC
Q 002724 762 AMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFIT 840 (888)
Q Consensus 762 vmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~ 840 (888)
+|||||||||||++|+++++.......+++|+|++|+.+|+++++||+++++++++|+++++++++. .+.|.+..|+++
T Consensus 154 vlIAgGtGItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 154 VFIGGGAGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred EEEEecccHhHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 9999999999999999998876444579999999999999999999999999999999999988752 267888899999
Q ss_pred HHHHHhhCCCC--CCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEE
Q 002724 841 EAILREHVPEG--SGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 841 ~~~L~~~l~~~--~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
+.+++..+... ..+..+|+|||++|++ +++..|+++|++ +++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~vyiCGP~~m~~-~~~~~l~~~Gv~-~~~i~~ 280 (283)
T cd06188 234 QVLLENYLKKHPAPEDIEFYLCGPPPMNS-AVIKMLDDLGVP-RENIAF 280 (283)
T ss_pred HHHHHHHhccCCCCCCeEEEEECCHHHHH-HHHHHHHHcCCC-HHHeec
Confidence 98777665321 2457899999999998 999999999999 999985
No 20
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=1.4e-32 Score=292.18 Aligned_cols=221 Identities=22% Similarity=0.438 Sum_probs=190.4
Q ss_pred CCCCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCC
Q 002724 644 VPREKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPK 712 (888)
Q Consensus 644 ~p~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~ 712 (888)
.|.....++|++++.++++++.|+|+++. ||||+.|. ...|+|||+|.+.+.+.++|+||.+
T Consensus 2 ~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~i~~~------- 74 (238)
T cd06211 2 LNVKDFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAPGYEGTRAFSIASSPSDAGEIELHIRLV------- 74 (238)
T ss_pred CCceEEeEEEEEEEecCCCEEEEEEEcCCCCcCccCCCCeEEEEcCCCCCccccccCCCCCCCCEEEEEEEEC-------
Confidence 35567789999999999999999999864 69998876 3679999999987778999999986
Q ss_pred CCCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 713 FPNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 713 ~P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
| +|.+|.+| +.+++|++|.|+||+|+|.+. ....++++||||||||||++++++++++. ....++.
T Consensus 75 -~-~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~----------~~~~~~~v~iagG~GiaP~~~~l~~~~~~-~~~~~v~ 141 (238)
T cd06211 75 -P-GGIATTYVHKQLKEGDELEISGPYGDFFVR----------DSDQRPIIFIAGGSGLSSPRSMILDLLER-GDTRKIT 141 (238)
T ss_pred -C-CCcchhhHhhcCCCCCEEEEECCccceEec----------CCCCCCEEEEeCCcCHHHHHHHHHHHHhc-CCCCcEE
Confidence 2 69999999 579999999999999998765 23347999999999999999999999876 3347899
Q ss_pred EEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHH
Q 002724 792 VVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAV 870 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av 870 (888)
|+|++|+.+|+++.++|++|++++++|+++++++++. .+.|.+..|++++ .+++.+.....+..+|+|||++|++ ++
T Consensus 142 l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyvCGp~~m~~-~~ 219 (238)
T cd06211 142 LFFGARTRAELYYLDEFEALEKDHPNFKYVPALSREPPESNWKGFTGFVHD-AAKKHFKNDFRGHKAYLCGPPPMID-AC 219 (238)
T ss_pred EEEecCChhhhccHHHHHHHHHhCCCeEEEEEECCCCCCcCcccccCcHHH-HHHHhcccccccCEEEEECCHHHHH-HH
Confidence 9999999999999999999999888999999998752 4578888999986 5666654223567899999999997 99
Q ss_pred HHHHHhcCCCCCCCEEE
Q 002724 871 QPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 871 ~~~L~~~Gv~~~~~I~~ 887 (888)
.+.|.++|++ +++||.
T Consensus 220 ~~~L~~~Gv~-~~~i~~ 235 (238)
T cd06211 220 IKTLMQGRLF-ERDIYY 235 (238)
T ss_pred HHHHHHcCCC-HHHccc
Confidence 9999999999 888874
No 21
>COG2041 Sulfite oxidase and related enzymes [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=308.63 Aligned_cols=168 Identities=31% Similarity=0.571 Sum_probs=151.1
Q ss_pred CCCCCCcceEecCC---CCCCcCCCC-cEEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcc
Q 002724 121 FITPVPLHYVRNHG---PVPKASWVD-WTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFN 196 (888)
Q Consensus 121 ~iTP~~~~yvrnh~---~vP~~d~~~-w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~ 196 (888)
.+|++..+..+++. .+|.++.++ |+|+|+|+|++|++||++||++ ||+.+++.+++|++|++...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~V~G~V~~p~~~t~~dl~~-~p~~~~~~~~~Cv~~Ws~~~---------- 136 (271)
T COG2041 68 VTTYFPFYDLGGDKPPAASPEIDLEKPWRLRVDGLVEKPLTLTYEDLLA-LPLEERIYTFHCVEGWSMVD---------- 136 (271)
T ss_pred ccccccceeeccCCCcccCccccccCCeEEEEeeeecCcceecHHHHhh-CCcccEEEEEEEecCceEee----------
Confidence 45555554445533 478888888 9999999999999999999965 99999999999999965432
Q ss_pred cCCCcccceEEEccchHHHHHHcCCCcCCCCeeEEEEEecCCCCCCCCCC--ccEeEEcccccCcCCCeEEeeccCCccC
Q 002724 197 WGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSK--YGTSIRKEVGMDPARDIILAYMQNGELL 274 (888)
Q Consensus 197 Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~--Y~~sipl~~a~~~~~dvlLAy~mNGepL 274 (888)
..|+||+|++||+++|++ ..|+||.|+++| + |.++++|++||+| .+||||+|||+||
T Consensus 137 --------~~W~Gv~l~~lL~~~~p~---~~A~~V~f~~~d--------~~~y~~~l~l~~a~~p--~~llA~~~~G~~L 195 (271)
T COG2041 137 --------APWTGVPLRELLDRAGPK---DNAKYVMFHSLD--------GPDYTTGLPLDDALHP--LTLLAYGMNGEPL 195 (271)
T ss_pred --------cceeeeeHHHHHHHhCcC---CCCeEEEEEccC--------ccccccCCCHHHhcCc--HhhHHHHhcCccC
Confidence 289999999999999999 579999999999 5 9999999999999 8999999999999
Q ss_pred CCCCCCcEEEEccCccccccccceeEEEEEeeCCCcceeeeccccC
Q 002724 275 SPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVL 320 (888)
Q Consensus 275 ~~~hG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~dyr~~ 320 (888)
|++||||+|||||++||+|++|||.+|+|++++..+||+..+|...
T Consensus 196 p~~~G~PlRLvvp~~yg~k~~K~l~~I~l~~~~~~g~We~~gy~~~ 241 (271)
T COG2041 196 PPENGAPLRLVVPGKYGWKSAKWLVRIELTDKPPDGYWERNGYHEY 241 (271)
T ss_pred ccccCCceEEEecchhcccCceEEEEEEEecCCCCCchhhcCcccc
Confidence 9999999999999999999999999999999999999999999763
No 22
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=1.8e-32 Score=306.54 Aligned_cols=217 Identities=22% Similarity=0.412 Sum_probs=190.5
Q ss_pred CCCeeeEEEEEEEEecCceeeeeeccC---C-----CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCC
Q 002724 645 PREKIPCKLVEKILISHDVRLFRFALP---Q-----EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPK 712 (888)
Q Consensus 645 p~~~~~~~Lv~k~~ls~dv~~f~f~lp---~-----pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~ 712 (888)
+.++.+++|++++.+++|++.|+|+++ . ||||+.|. ...|+|||+|.+.+.+.++|+||.+
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~l~~~ik~~------- 175 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHGRQLDFLPGQYARLQIPGTDDWRSYSFANRPNATNQLQFLIRLL------- 175 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCCCccCcCCCCEEEEEeCCCCceeecccCCCCCCCCeEEEEEEEC-------
Confidence 456778999999999999999999876 2 79998886 3579999999988778999999996
Q ss_pred CCCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 713 FPNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 713 ~P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
+ +|.+|.+| +.+++|+.|.|+||+|.|.+. ...++++|||||||||||++|+++++.. ....+++
T Consensus 176 -~-~G~~s~~L~~~l~~G~~v~i~gP~G~f~l~-----------~~~~~~vliagGtGiaP~~s~l~~~~~~-~~~~~v~ 241 (340)
T PRK11872 176 -P-DGVMSNYLRERCQVGDEILFEAPLGAFYLR-----------EVERPLVFVAGGTGLSAFLGMLDELAEQ-GCSPPVH 241 (340)
T ss_pred -C-CCcchhhHhhCCCCCCEEEEEcCcceeEeC-----------CCCCcEEEEeCCcCccHHHHHHHHHHHc-CCCCcEE
Confidence 2 68999999 579999999999999998754 2347999999999999999999999876 4457899
Q ss_pred EEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHH
Q 002724 792 VVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQ 871 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~ 871 (888)
|+|++|+.+|++++++|++|++++++|+++++++++ +++|.+..|++++.+.+..+. .....||+|||++|++ +++
T Consensus 242 l~~g~r~~~dl~~~~el~~~~~~~~~~~~~~~~s~~-~~~~~g~~g~v~~~l~~~~l~--~~~~~vy~CGp~~mv~-~~~ 317 (340)
T PRK11872 242 LYYGVRHAADLCELQRLAAYAERLPNFRYHPVVSKA-SADWQGKRGYIHEHFDKAQLR--DQAFDMYLCGPPPMVE-AVK 317 (340)
T ss_pred EEEecCChHHhccHHHHHHHHHHCCCcEEEEEEeCC-CCcCCCceeeccHHHHHhhcC--cCCCEEEEeCCHHHHH-HHH
Confidence 999999999999999999999999999999999987 778999999999866655553 2346799999999997 999
Q ss_pred HHHHhcCCCCCCCEEE
Q 002724 872 PNLEKMNYDTKDSLLV 887 (888)
Q Consensus 872 ~~L~~~Gv~~~~~I~~ 887 (888)
+.|+++|++ +++||.
T Consensus 318 ~~L~~~Gv~-~~~i~~ 332 (340)
T PRK11872 318 QWLDEQALE-NYRLYY 332 (340)
T ss_pred HHHHHcCCC-HHHEEE
Confidence 999999999 999984
No 23
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=1.7e-32 Score=288.73 Aligned_cols=212 Identities=28% Similarity=0.522 Sum_probs=185.9
Q ss_pred EEEEEEEEecCceeeeeeccCC-----CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHH
Q 002724 651 CKLVEKILISHDVRLFRFALPQ-----EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQY 722 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~ 722 (888)
++|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ .+|.+|.+
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~ 71 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDGDKRPFSIASAPHEDGEIELHIRAV---------PGGSFSDY 71 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCCcccCCCCEEEEEcCCCCceeeecccCCCCCCeEEEEEEec---------CCCccHHH
Confidence 5799999999999999999874 79998876 4589999999988778999999996 25899999
Q ss_pred H-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCch
Q 002724 723 L-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDD 801 (888)
Q Consensus 723 L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~D 801 (888)
| +.+++|+.|.|+||+|.|.+. ....++++||||||||||++++++++++. ....+++|+|++|+.+|
T Consensus 72 l~~~l~~G~~v~i~gP~G~~~~~----------~~~~~~ivliagG~GiaP~~~~l~~l~~~-~~~~~v~l~~~~r~~~~ 140 (224)
T cd06189 72 VFEELKENGLVRIEGPLGDFFLR----------EDSDRPLILIAGGTGFAPIKSILEHLLAQ-GSKRPIHLYWGARTEED 140 (224)
T ss_pred HHHhccCCCEEEEecCCccEEec----------cCCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCCCEEEEEecCChhh
Confidence 8 569999999999999998865 23467899999999999999999999876 34578999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCC
Q 002724 802 ILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDT 881 (888)
Q Consensus 802 il~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~ 881 (888)
+++++||++|++++++|+++++++++ +++|.+..|++++.+++.... ..+..+|+|||++|++ ++++.|+++|++
T Consensus 141 ~~~~~~l~~l~~~~~~~~~~~~~s~~-~~~~~g~~g~v~~~l~~~~~~--~~~~~v~vCGp~~m~~-~~~~~l~~~G~~- 215 (224)
T cd06189 141 LYLDELLEAWAEAHPNFTYVPVLSEP-EEGWQGRTGLVHEAVLEDFPD--LSDFDVYACGSPEMVY-AARDDFVEKGLP- 215 (224)
T ss_pred ccCHHHHHHHHHhCCCeEEEEEeCCC-CcCCccccccHHHHHHhhccC--ccccEEEEECCHHHHH-HHHHHHHHcCCC-
Confidence 99999999999988999999999987 667988999999876655432 3467899999999997 999999999999
Q ss_pred CCCEEE
Q 002724 882 KDSLLV 887 (888)
Q Consensus 882 ~~~I~~ 887 (888)
+++||.
T Consensus 216 ~~~i~~ 221 (224)
T cd06189 216 EENFFS 221 (224)
T ss_pred HHHccc
Confidence 998874
No 24
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=7.1e-32 Score=285.36 Aligned_cols=217 Identities=29% Similarity=0.538 Sum_probs=189.4
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC-------CCceEeee-------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCC
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP-------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKF 713 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp-------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~ 713 (888)
|++++|++++.++++++.|+|+.+. ||||+.|. ...|+|||++.+.+.+.++|+||.+
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~-------- 72 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRV-------- 72 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEc--------
Confidence 6789999999999999999999864 69998765 3459999999988778999999985
Q ss_pred CCCChhcHHHh-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEE
Q 002724 714 PNGGLMSQYLD-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYV 792 (888)
Q Consensus 714 P~gG~~S~~L~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~L 792 (888)
+ +|.+|.+|. .+++|+.|.|.||+|.|.+. ....++++||||||||||++++++++++. ....+++|
T Consensus 73 ~-~G~~s~~l~~~l~~Gd~v~i~gP~G~~~~~----------~~~~~~~vliagG~Giap~~~~~~~~~~~-~~~~~i~l 140 (235)
T cd06217 73 P-GGEVSPYLHDEVKVGDLLEVRGPIGTFTWN----------PLHGDPVVLLAGGSGIVPLMSMIRYRRDL-GWPVPFRL 140 (235)
T ss_pred C-CCcchHHHHhcCCCCCEEEEeCCceeeEeC----------CCCCceEEEEecCcCccHHHHHHHHHHhc-CCCceEEE
Confidence 1 588999995 59999999999999998765 22457999999999999999999999876 44678999
Q ss_pred EEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHH
Q 002724 793 VYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQP 872 (888)
Q Consensus 793 i~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~ 872 (888)
+|++|+.++++++++|+++++++++++++++++++..++|.+..|+++++.+++.+.. ..+..+|+|||++|++ ++.+
T Consensus 141 ~~~~r~~~~~~~~~el~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp~~m~~-~v~~ 218 (235)
T cd06217 141 LYSARTAEDVIFRDELEQLARRHPNLHVTEALTRAAPADWLGPAGRITADLIAELVPP-LAGRRVYVCGPPAFVE-AATR 218 (235)
T ss_pred EEecCCHHHhhHHHHHHHHHHHCCCeEEEEEeCCCCCCCcCCcCcEeCHHHHHhhCCC-ccCCEEEEECCHHHHH-HHHH
Confidence 9999999999999999999998889999999987645678888999999888776543 3568999999999997 9999
Q ss_pred HHHhcCCCCCCCEEE
Q 002724 873 NLEKMNYDTKDSLLV 887 (888)
Q Consensus 873 ~L~~~Gv~~~~~I~~ 887 (888)
.|+++|++ +++|+.
T Consensus 219 ~l~~~Gv~-~~~i~~ 232 (235)
T cd06217 219 LLLELGVP-RDRIRT 232 (235)
T ss_pred HHHHcCCC-HHHEee
Confidence 99999999 898874
No 25
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=8.3e-32 Score=285.37 Aligned_cols=215 Identities=22% Similarity=0.420 Sum_probs=185.6
Q ss_pred eeEEEEEEEEecCceeeeeeccCC-----------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCC
Q 002724 649 IPCKLVEKILISHDVRLFRFALPQ-----------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKF 713 (888)
Q Consensus 649 ~~~~Lv~k~~ls~dv~~f~f~lp~-----------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~ 713 (888)
..++|++++.++++++.|+|+.+. +|||+.|. ...|+|||+|.+.+.+.++|+||.+
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~~~~l~~~i~~~-------- 73 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGTDTRRSYSLANTPNWDGRLEFLIRLL-------- 73 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCcccccccCCcCCCCEEEEEcCCCccceecccCCCCCCCCEEEEEEEEc--------
Confidence 368999999999999999999752 69998876 4689999999988778999999986
Q ss_pred CCCChhcHHHhc-CCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEE
Q 002724 714 PNGGLMSQYLDS-LSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYV 792 (888)
Q Consensus 714 P~gG~~S~~L~~-L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~L 792 (888)
+ +|.+|.+|.. +++|+.|.|+||+|+|.+. ....++++||||||||||+++|++++++. ....+++|
T Consensus 74 ~-~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~----------~~~~~~~vliagGtGiaP~~~~l~~~~~~-~~~~~v~l 141 (236)
T cd06210 74 P-GGAFSTYLETRAKVGQRLNLRGPLGAFGLR----------ENGLRPRWFVAGGTGLAPLLSMLRRMAEW-GEPQEARL 141 (236)
T ss_pred C-CCccchhhhhCcCCCCEEEEecCcceeeec----------CCCCccEEEEccCcchhHHHHHHHHHHhc-CCCceEEE
Confidence 2 6899999965 9999999999999998765 23457899999999999999999999876 34578999
Q ss_pred EEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHH
Q 002724 793 VYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQP 872 (888)
Q Consensus 793 i~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~ 872 (888)
+|++|+.+|+++.++|++|++++++++++++++++ .++|.+..|++.+. +.+.+........+|+|||++|++ ++++
T Consensus 142 ~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~-~~~~~~~~g~~~~~-l~~~l~~~~~~~~vyicGp~~m~~-~~~~ 218 (236)
T cd06210 142 FFGVNTEAELFYLDELKRLADSLPNLTVRICVWRP-GGEWEGYRGTVVDA-LREDLASSDAKPDIYLCGPPGMVD-AAFA 218 (236)
T ss_pred EEecCCHHHhhhHHHHHHHHHhCCCeEEEEEEcCC-CCCcCCccCcHHHH-HHHhhcccCCCcEEEEeCCHHHHH-HHHH
Confidence 99999999999999999999999999999999976 67788888998774 455554333457899999999998 9999
Q ss_pred HHHhcCCCCCCCEEE
Q 002724 873 NLEKMNYDTKDSLLV 887 (888)
Q Consensus 873 ~L~~~Gv~~~~~I~~ 887 (888)
.|+++|++ +++||.
T Consensus 219 ~l~~~G~~-~~~i~~ 232 (236)
T cd06210 219 AAREAGVP-DEQVYL 232 (236)
T ss_pred HHHHcCCC-HHHeee
Confidence 99999999 888874
No 26
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=8.9e-32 Score=300.71 Aligned_cols=220 Identities=23% Similarity=0.473 Sum_probs=190.9
Q ss_pred CCCCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCC
Q 002724 644 VPREKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKF 713 (888)
Q Consensus 644 ~p~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~ 713 (888)
.+.++.+++|++++.+++|++.|+|+++. ||||+.|. ...|+|||+|.+.+.+.++|+||.+
T Consensus 98 ~~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~R~ySias~p~~~~~l~~~ik~~-------- 169 (339)
T PRK07609 98 IPVKKLPCRVASLERVAGDVMRLKLRLPATERLQYLAGQYIEFILKDGKRRSYSIANAPHSGGPLELHIRHM-------- 169 (339)
T ss_pred ccceEEEEEEEEEEcCCCcEEEEEEEcCCCCCCccCCCCeEEEECCCCceeeeecCCCCCCCCEEEEEEEec--------
Confidence 35567889999999999999999999762 79998886 4689999999988778999999986
Q ss_pred CCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEE
Q 002724 714 PNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYV 792 (888)
Q Consensus 714 P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~L 792 (888)
+ +|.+|++| +.+++|+.|.|+||+|+|.+. ....++++|||||||||||++|++++++. +...+++|
T Consensus 170 ~-~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~----------~~~~~~ivlIagGtGiaP~~s~l~~~~~~-~~~~~i~l 237 (339)
T PRK07609 170 P-GGVFTDHVFGALKERDILRIEGPLGTFFLR----------EDSDKPIVLLASGTGFAPIKSIVEHLRAK-GIQRPVTL 237 (339)
T ss_pred C-CCccHHHHHHhccCCCEEEEEcCceeEEec----------CCCCCCEEEEecCcChhHHHHHHHHHHhc-CCCCcEEE
Confidence 2 69999999 589999999999999999875 23557999999999999999999999876 45678999
Q ss_pred EEecCCCchhhhHHHHHHHHHhCCCeEEEEEEecc-ccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHH
Q 002724 793 VYANRTEDDILLREELDDWAKKHDRVKVWYVVEKS-IKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQ 871 (888)
Q Consensus 793 i~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~-~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~ 871 (888)
+|++|+.+|++++++|++|++++++|+++++++++ .++.|.+..|++++.+++... + ..+..+|+|||++|++ +++
T Consensus 238 ~~g~r~~~dl~~~e~l~~~~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~~~~~~~~-~-~~~~~vy~CGp~~m~~-~~~ 314 (339)
T PRK07609 238 YWGARRPEDLYLSALAEQWAEELPNFRYVPVVSDALDDDAWTGRTGFVHQAVLEDFP-D-LSGHQVYACGSPVMVY-AAR 314 (339)
T ss_pred EEecCChHHhccHHHHHHHHHhCCCeEEEEEecCCCCCCCccCccCcHHHHHHhhcc-c-ccCCEEEEECCHHHHH-HHH
Confidence 99999999999999999999988999999999874 256788889999987665543 2 2457899999999998 999
Q ss_pred HHHHhcCCCCCCCEEE
Q 002724 872 PNLEKMNYDTKDSLLV 887 (888)
Q Consensus 872 ~~L~~~Gv~~~~~I~~ 887 (888)
+.|+++|++ +++||.
T Consensus 315 ~~l~~~G~~-~~~i~~ 329 (339)
T PRK07609 315 DDFVAAGLP-AEEFFA 329 (339)
T ss_pred HHHHHcCCC-HHHeEE
Confidence 999999999 999985
No 27
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=1.1e-31 Score=284.60 Aligned_cols=215 Identities=21% Similarity=0.292 Sum_probs=185.0
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC-----CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChh
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLM 719 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~ 719 (888)
+++++|++++.++++++.|+|+.+. ||||+.+. ...|+|||+|.+.+.+.++|+||.. + +|.+
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySias~p~~~~~l~~~v~~~--------~-~~~~ 72 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEAPFSFRAGQYLMVVMGEKDKRPFSIASTPREKGFIELHIGAS--------E-LNLY 72 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCCCCccCCCCEEEEEcCCCcceeecccCCCCCCCcEEEEEEEc--------C-CCcc
Confidence 5789999999999999999998765 79998876 4679999999987778899999985 1 3555
Q ss_pred cHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 002724 720 SQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT 798 (888)
Q Consensus 720 S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt 798 (888)
+.++ +++++|++|.|.||+|.|.+. ....++++||||||||||+++++++++.. ....+++|+|++|+
T Consensus 73 ~~~~~~~l~~G~~v~v~gP~G~~~~~----------~~~~~~~vliagG~GiaP~~~~l~~~~~~-~~~~~v~l~~g~r~ 141 (232)
T PRK08051 73 AMAVMERILKDGEIEVDIPHGDAWLR----------EESERPLLLIAGGTGFSYARSILLTALAQ-GPNRPITLYWGGRE 141 (232)
T ss_pred hHHHHHHcCCCCEEEEEcCCCceEcc----------CCCCCcEEEEecCcCcchHHHHHHHHHHh-CCCCcEEEEEEecc
Confidence 5555 899999999999999998765 23457899999999999999999999876 45678999999999
Q ss_pred CchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHH-Hhc
Q 002724 799 EDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNL-EKM 877 (888)
Q Consensus 799 ~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L-~~~ 877 (888)
.+|++|.+||++|++++++|+++.+++++ ++.|.+..|++++.+++.... ..+..+|+|||++|++ ++++.| ++.
T Consensus 142 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~v~~~l~~~~~~--~~~~~vyicGp~~m~~-~v~~~l~~~~ 217 (232)
T PRK08051 142 EDHLYDLDELEALALKHPNLHFVPVVEQP-EEGWQGKTGTVLTAVMQDFGS--LAEYDIYIAGRFEMAK-IARELFCRER 217 (232)
T ss_pred HHHhhhhHHHHHHHHHCCCcEEEEEeCCC-CCCcccceeeehHHHHhhccC--cccCEEEEECCHHHHH-HHHHHHHHHc
Confidence 99999999999999999999999999876 777988899999876654433 2456899999999997 999999 999
Q ss_pred CCCCCCCEEE
Q 002724 878 NYDTKDSLLV 887 (888)
Q Consensus 878 Gv~~~~~I~~ 887 (888)
|++ +++||.
T Consensus 218 G~~-~~~i~~ 226 (232)
T PRK08051 218 GAR-EEHLFG 226 (232)
T ss_pred CCC-HHHeec
Confidence 999 888874
No 28
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=1.6e-31 Score=281.96 Aligned_cols=217 Identities=54% Similarity=0.940 Sum_probs=189.1
Q ss_pred EEEEEEEEecCceeeeeeccCC--------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCC
Q 002724 651 CKLVEKILISHDVRLFRFALPQ--------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNG 716 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~g 716 (888)
++|++++.+++++..|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ ++
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~---------~~ 71 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIY---------PG 71 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcCCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEEC---------CC
Confidence 3689999999999999999874 69998876 4679999999887778999999986 15
Q ss_pred ChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCC-ceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEe
Q 002724 717 GLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFA-KKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYA 795 (888)
Q Consensus 717 G~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~-~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~ 795 (888)
|.+|.+|..+++|++|.|+||+|.|.+. .... ++++||||||||||+++++++++....+..+++|+|+
T Consensus 72 G~~s~~l~~~~~G~~v~i~gP~G~~~~~----------~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~ 141 (234)
T cd06183 72 GKMSQYLHSLKPGDTVEIRGPFGKFEYK----------PNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYA 141 (234)
T ss_pred CcchhHHhcCCCCCEEEEECCccceeec----------CCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEe
Confidence 9999999999999999999999998775 2223 7999999999999999999999876334689999999
Q ss_pred cCCCchhhhHHHHHHHHHhC-CCeEEEEEEeccccCCccccccccCHHHHHhhCCC-CCCCcEEEEECChhhHHHHHHHH
Q 002724 796 NRTEDDILLREELDDWAKKH-DRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPE-GSGDTLALACGPPPMIQFAVQPN 873 (888)
Q Consensus 796 ~Rt~~Dil~~dEL~~l~~~~-~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~-~~~~~~vyvCGPp~mi~~av~~~ 873 (888)
+|+.+++++.+||++|.+.+ ++++++++++++ ++.|.+..|++++++++..+.. ...+..+|+|||++|++.++++.
T Consensus 142 ~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~icGp~~~~~~~~~~~ 220 (234)
T cd06183 142 NRTEEDILLREELDELAKKHPDRFKVHYVLSRP-PEGWKGGVGFITKEMIKEHLPPPPSEDTLVLVCGPPPMIEGAVKGL 220 (234)
T ss_pred cCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCC-CcCCccccceECHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 99999999999999999886 789999999876 6778889999999888877653 24568999999999983278999
Q ss_pred HHhcCCCCCCCEEEC
Q 002724 874 LEKMNYDTKDSLLVF 888 (888)
Q Consensus 874 L~~~Gv~~~~~I~~F 888 (888)
|+++|++ +++||.|
T Consensus 221 l~~~G~~-~~~i~~~ 234 (234)
T cd06183 221 LKELGYK-KDNVFKF 234 (234)
T ss_pred HHHcCCC-HHHEEeC
Confidence 9999999 9999988
No 29
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=2.5e-31 Score=280.50 Aligned_cols=212 Identities=29% Similarity=0.530 Sum_probs=185.2
Q ss_pred EEEEEEEecCceeeeeeccCC-------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCCh
Q 002724 652 KLVEKILISHDVRLFRFALPQ-------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGL 718 (888)
Q Consensus 652 ~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~ 718 (888)
+|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ .+|.
T Consensus 2 ~v~~~~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~G~ 72 (231)
T cd06215 2 RCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRV---------PGGL 72 (231)
T ss_pred eEEEEEEcCCCeEEEEEECCCCCcCCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEc---------CCCc
Confidence 789999999999999999975 69998765 3579999999988888899999986 2589
Q ss_pred hcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecC
Q 002724 719 MSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANR 797 (888)
Q Consensus 719 ~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~R 797 (888)
+|.+| +.+++|++|.|+||+|.|.+. ....++++||||||||||+++|++++++. ....+++|+|++|
T Consensus 73 ~s~~l~~~~~~G~~v~i~gP~G~f~~~----------~~~~~~~vlIagG~Giap~~~~l~~~~~~-~~~~~v~l~~~~r 141 (231)
T cd06215 73 VSNWLHDNLKVGDELWASGPAGEFTLI----------DHPADKLLLLSAGSGITPMMSMARWLLDT-RPDADIVFIHSAR 141 (231)
T ss_pred chHHHHhcCCCCCEEEEEcCcceeEeC----------CCCCCcEEEEecCcCcchHHHHHHHHHhc-CCCCcEEEEEecC
Confidence 99999 589999999999999998765 22368999999999999999999999876 3457899999999
Q ss_pred CCchhhhHHHHHHHHHhCCCeEEEEEEeccccC-CccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 798 TEDDILLREELDDWAKKHDRVKVWYVVEKSIKE-GWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 798 t~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~-~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
+.+|+++.++|+++++++++++++++++++ ++ .|.+..|+++++.+++.+.+ ..+..+|+|||++|++ ++++.|++
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~l~~~~~~-~~~~~v~icGp~~m~~-~~~~~l~~ 218 (231)
T cd06215 142 SPADIIFADELEELARRHPNFRLHLILEQP-APGAWGGYRGRLNAELLALLVPD-LKERTVFVCGPAGFMK-AVKSLLAE 218 (231)
T ss_pred ChhhhhHHHHHHHHHHHCCCeEEEEEEccC-CCCcccccCCcCCHHHHHHhcCC-ccCCeEEEECCHHHHH-HHHHHHHH
Confidence 999999999999999988899999999876 44 38888999999888877654 2456899999999997 99999999
Q ss_pred cCCCCCCCEEE
Q 002724 877 MNYDTKDSLLV 887 (888)
Q Consensus 877 ~Gv~~~~~I~~ 887 (888)
+|++ +++||.
T Consensus 219 ~gv~-~~~i~~ 228 (231)
T cd06215 219 LGFP-MSRFHQ 228 (231)
T ss_pred cCCC-HHHeee
Confidence 9999 888875
No 30
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.98 E-value=2.6e-31 Score=280.32 Aligned_cols=211 Identities=25% Similarity=0.487 Sum_probs=183.0
Q ss_pred eeEEEEEEEEecCceeeeeeccCC-------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCC
Q 002724 649 IPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGG 717 (888)
Q Consensus 649 ~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG 717 (888)
.+++|++++.++++++.|+|+++. +|||+.|. ...|+|||+|.+.+ +.|+|+||.+ .+|
T Consensus 2 ~~~~V~~~~~~t~~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~-~~i~~~i~~~---------~~G 71 (228)
T cd06209 2 FEATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVPGTDETRSYSFSSAPGD-PRLEFLIRLL---------PGG 71 (228)
T ss_pred eeEEEEEEEEcCCCeEEEEEEcCCCCcCccCCCCEEEEEeCCCCcccccccccCCCC-CeEEEEEEEc---------CCC
Confidence 368999999999999999999865 69998886 46899999998876 8999999986 268
Q ss_pred hhcHHHhc-CCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEec
Q 002724 718 LMSQYLDS-LSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYAN 796 (888)
Q Consensus 718 ~~S~~L~~-L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~ 796 (888)
.+|.+|.+ +++|+.|.|+||+|.+.+. ...++++||||||||||+++++++++.. ....+++|+|++
T Consensus 72 ~~s~~l~~~l~~G~~v~v~gP~G~~~~~-----------~~~~~~vlia~GtGIaP~~~ll~~~~~~-~~~~~v~l~~~~ 139 (228)
T cd06209 72 AMSSYLRDRAQPGDRLTLTGPLGSFYLR-----------EVKRPLLMLAGGTGLAPFLSMLDVLAED-GSAHPVHLVYGV 139 (228)
T ss_pred cchhhHHhccCCCCEEEEECCcccceec-----------CCCCeEEEEEcccCHhHHHHHHHHHHhc-CCCCcEEEEEec
Confidence 99999966 9999999999999998654 2347899999999999999999999876 355789999999
Q ss_pred CCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 797 RTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 797 Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
|+.+|++++++|++|.+++++++++++++++ +.|.+..|++++.+.+..+. ..+..+|+|||++|++ ++++.|++
T Consensus 140 r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~--~~~~~~~g~v~~~~~~~~~~--~~~~~v~icGp~~m~~-~~~~~l~~ 214 (228)
T cd06209 140 TRDADLVELDRLEALAERLPGFSFRTVVADP--DSWHPRKGYVTDHLEAEDLN--DGDVDVYLCGPPPMVD-AVRSWLDE 214 (228)
T ss_pred CCHHHhccHHHHHHHHHhCCCeEEEEEEcCC--CccCCCcCCccHHHHHhhcc--CCCcEEEEeCCHHHHH-HHHHHHHH
Confidence 9999999999999999988999999999875 33888889998865544443 3457899999999997 99999999
Q ss_pred cCCCCCCCEEE
Q 002724 877 MNYDTKDSLLV 887 (888)
Q Consensus 877 ~Gv~~~~~I~~ 887 (888)
+|++ +++||.
T Consensus 215 ~G~~-~~~i~~ 224 (228)
T cd06209 215 QGIE-PANFYY 224 (228)
T ss_pred cCCC-HHHEee
Confidence 9999 888874
No 31
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.98 E-value=2.3e-31 Score=296.67 Aligned_cols=215 Identities=21% Similarity=0.369 Sum_probs=184.3
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC-----CCceEeee-----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCC
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP-----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGG 717 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp-----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG 717 (888)
...++|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.|+|+||.+ + +|
T Consensus 9 ~~~~~V~~i~~~t~~v~~l~l~~~~~~~f~pGQfv~l~~~~~~~~~R~ySias~p~~~~~l~i~Vk~~--------~-~G 79 (332)
T PRK10684 9 PNRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIRNSAETLRAYTLSSTPGVSEFITLTVRRI--------D-DG 79 (332)
T ss_pred ceeEEEEEEEccCCCeEEEEEcCCCCCCcCCCCEEEEEecCCCEeeeeecccCCCCCCCcEEEEEEEc--------C-CC
Confidence 3488999999999999999998764 79998776 3579999999988778999999986 2 68
Q ss_pred hhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEec
Q 002724 718 LMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYAN 796 (888)
Q Consensus 718 ~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~ 796 (888)
.+|++| +.+++|++|.++||+|+|.+. ....++++||||||||||+++|++++++. ....+++|+|++
T Consensus 80 ~~S~~L~~~l~~Gd~v~v~gP~G~f~l~----------~~~~~~~vliAgG~GItP~~sml~~~~~~-~~~~~v~l~y~~ 148 (332)
T PRK10684 80 VGSQWLTRDVKRGDYLWLSDAMGEFTCD----------DKAEDKYLLLAAGCGVTPIMSMRRWLLKN-RPQADVQVIFNV 148 (332)
T ss_pred cchhHHHhcCCCCCEEEEeCCccccccC----------CCCCCcEEEEecCcCcchHHHHHHHHHhc-CCCCCEEEEEeC
Confidence 999999 689999999999999998765 23457999999999999999999998876 445799999999
Q ss_pred CCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 797 RTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 797 Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
|+.+|++|++||++|++++++++++++.+.. ....+..||++++++++.+++. .+..+|+|||++||+ ++.+.|++
T Consensus 149 r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~--~~~~~~~grl~~~~l~~~~~~~-~~~~vyiCGP~~m~~-~v~~~l~~ 224 (332)
T PRK10684 149 RTPQDVIFADEWRQLKQRYPQLNLTLVAENN--ATEGFIAGRLTRELLQQAVPDL-ASRTVMTCGPAPYMD-WVEQEVKA 224 (332)
T ss_pred CChHHhhhHHHHHHHHHHCCCeEEEEEeccC--CCCCccccccCHHHHHHhcccc-cCCEEEEECCHHHHH-HHHHHHHH
Confidence 9999999999999999999999888877643 1122357999988888766542 357899999999998 99999999
Q ss_pred cCCCCCCCEEE
Q 002724 877 MNYDTKDSLLV 887 (888)
Q Consensus 877 ~Gv~~~~~I~~ 887 (888)
+|++ +++||.
T Consensus 225 ~Gv~-~~~i~~ 234 (332)
T PRK10684 225 LGVT-ADRFFK 234 (332)
T ss_pred cCCC-HHHeEe
Confidence 9999 888885
No 32
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.98 E-value=2.8e-31 Score=280.74 Aligned_cols=214 Identities=26% Similarity=0.535 Sum_probs=184.7
Q ss_pred eEEEEEEEEecCceeeeeeccCC-------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCCh
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGL 718 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~ 718 (888)
+++|++++.++++++.|+|+++. ||||+.|. ...|+|||+|.+.+.+.|+|+||.+ + +|.
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~--------~-~G~ 72 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVPGTEETRSFSMANTPADPGRLEFIIKKY--------P-GGL 72 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCCcCCcCCCCeEEEEcCCCCcccccccCCCCCCCCEEEEEEEEC--------C-CCc
Confidence 58999999999999999998743 79998876 3689999999988778999999996 2 689
Q ss_pred hcHHHh-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecC
Q 002724 719 MSQYLD-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANR 797 (888)
Q Consensus 719 ~S~~L~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~R 797 (888)
+|.+|. .+++|++|.|.||+|.|.+. ....++++||||||||||++++++++++. ....+++|+|++|
T Consensus 73 ~s~~l~~~l~~G~~v~i~gP~G~~~~~----------~~~~~~~l~iagG~Giap~~~~l~~~~~~-~~~~~v~l~~~~r 141 (232)
T cd06212 73 FSSFLDDGLAVGDPVTVTGPYGTCTLR----------ESRDRPIVLIGGGSGMAPLLSLLRDMAAS-GSDRPVRFFYGAR 141 (232)
T ss_pred hhhHHhhcCCCCCEEEEEcCcccceec----------CCCCCcEEEEecCcchhHHHHHHHHHHhc-CCCCcEEEEEecc
Confidence 999996 59999999999999998865 23467999999999999999999999876 4456899999999
Q ss_pred CCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 798 TEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 798 t~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
+.++++++++|+++++++++|+++++++++. ++.|.+..|++++ .+.+.+.+ ..+..||+|||++|++ ++.+.|++
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~~~~~~~~~~~g~~~~-~~~~~~~~-~~~~~v~~CGp~~~~~-~v~~~l~~ 218 (232)
T cd06212 142 TARDLFYLEEIAALGEKIPDFTFIPALSESPDDEGWSGETGLVTE-VVQRNEAT-LAGCDVYLCGPPPMID-AALPVLEM 218 (232)
T ss_pred chHHhccHHHHHHHHHhCCCEEEEEEECCCCCCCCCcCCcccHHH-HHHhhccC-ccCCEEEEECCHHHHH-HHHHHHHH
Confidence 9999999999999998888999999998753 2568888899986 45555543 2457899999999997 99999999
Q ss_pred cCCCCCCCEEE
Q 002724 877 MNYDTKDSLLV 887 (888)
Q Consensus 877 ~Gv~~~~~I~~ 887 (888)
+|++ +++||.
T Consensus 219 ~G~~-~~~i~~ 228 (232)
T cd06212 219 SGVP-PDQIFY 228 (232)
T ss_pred cCCC-HHHeee
Confidence 9999 999985
No 33
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.98 E-value=5.5e-31 Score=277.77 Aligned_cols=211 Identities=23% Similarity=0.426 Sum_probs=181.6
Q ss_pred eEEEEEEEEecCceeeeeeccCC-----CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
+++|++++.+++++++|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ ++|.+|
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~~~l~~~~~~~~r~ysi~s~~~~~~~l~~~vk~~---------~~G~~s 72 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLPGLPAARSYSFANAPQGDGQLSFHIRKV---------PGGAFS 72 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCCCCcCCCCEEEEEeCCCCcccccccCCCCCCCCEEEEEEEEC---------CCCcch
Confidence 68999999999999999999864 79998776 3689999999988778999999986 268999
Q ss_pred HHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 002724 721 QYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTE 799 (888)
Q Consensus 721 ~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~ 799 (888)
.+| +.+++|+.|.|+||+|.|.+. ...++++||||||||||+++++++++.. ...++++|+|++|+.
T Consensus 73 ~~l~~~l~~G~~v~i~gP~G~~~~~-----------~~~~~~lliagG~GiaP~~~~~~~~~~~-~~~~~i~l~~~~r~~ 140 (227)
T cd06213 73 GWLFGADRTGERLTVRGPFGDFWLR-----------PGDAPILCIAGGSGLAPILAILEQARAA-GTKRDVTLLFGARTQ 140 (227)
T ss_pred HHHHhcCCCCCEEEEeCCCcceEeC-----------CCCCcEEEEecccchhHHHHHHHHHHhc-CCCCcEEEEEeeCCH
Confidence 999 779999999999999998765 2347999999999999999999999876 446789999999999
Q ss_pred chhhhHHHHHHHHHhC-CCeEEEEEEeccc-cCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhc
Q 002724 800 DDILLREELDDWAKKH-DRVKVWYVVEKSI-KEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKM 877 (888)
Q Consensus 800 ~Dil~~dEL~~l~~~~-~~f~v~~~~s~~~-~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~ 877 (888)
+|+++.++|+++++++ +++++++++++.. ...|.+..|++++. +.+.+ ..+..+|+|||++|++ ++++.|+++
T Consensus 141 ~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~-l~~~~---~~~~~v~~CGp~~~~~-~~~~~l~~~ 215 (227)
T cd06213 141 RDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEH-IAEVL---LAATEAYLCGPPAMID-AAIAVLRAL 215 (227)
T ss_pred HHhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHH-HHhhc---cCCCEEEEECCHHHHH-HHHHHHHHc
Confidence 9999999999999875 7899999888652 34588888888774 44444 2457899999999997 999999999
Q ss_pred CCCCCCCEEE
Q 002724 878 NYDTKDSLLV 887 (888)
Q Consensus 878 Gv~~~~~I~~ 887 (888)
|++ +++||.
T Consensus 216 G~~-~~~i~~ 224 (227)
T cd06213 216 GIA-REHIHA 224 (227)
T ss_pred CCC-HHHEec
Confidence 999 888874
No 34
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.97 E-value=1.1e-30 Score=278.94 Aligned_cols=216 Identities=25% Similarity=0.428 Sum_probs=185.5
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC--------CCceEeee--------eeeeeeecccCCCCCcEEEEEEEEEeecC
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP--------LCMRAYTPTSSVDEVGHFDLVVKIYFKGV 709 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp--------~~~R~YTp~S~~~~~g~leL~IK~y~~~~ 709 (888)
+.|+.++|++++.+++++++|+|+.+. ||||+.|. ...|+|||+|.+.+. .|+|+||.+
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~~-~l~~~ik~~---- 78 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGD-YYRISVKRE---- 78 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCCC-eEEEEEEEc----
Confidence 458899999999999999999998763 69997665 367999999987654 899999985
Q ss_pred CCCCCCCChhcHHHhc-CCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCc
Q 002724 710 HPKFPNGGLMSQYLDS-LSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDET 788 (888)
Q Consensus 710 ~~~~P~gG~~S~~L~~-L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~ 788 (888)
+ +|.+|++|.+ +++|++|.|+||+|.|.+. ....++++||||||||||+++++++++.. ....
T Consensus 79 ----~-~G~~s~~l~~~~~~Gd~v~i~gP~G~~~~~----------~~~~~~llliagGtGiaP~~~~l~~~~~~-~~~~ 142 (247)
T cd06184 79 ----P-GGLVSNYLHDNVKVGDVLEVSAPAGDFVLD----------EASDRPLVLISAGVGITPMLSMLEALAAE-GPGR 142 (247)
T ss_pred ----C-CCcchHHHHhcCCCCCEEEEEcCCCceECC----------CCCCCcEEEEeccccHhHHHHHHHHHHhc-CCCC
Confidence 2 6999999966 9999999999999998765 22567999999999999999999999875 4467
Q ss_pred eEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCC----ccccccccCHHHHHhhCCCCCCCcEEEEECChh
Q 002724 789 EMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEG----WQYSTGFITEAILREHVPEGSGDTLALACGPPP 864 (888)
Q Consensus 789 ~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~----w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~ 864 (888)
+++|+|++|+.++++++++|++|++++++++++++++++ .+. |.+..|+++.+.+.+.+. ..+..+|+|||++
T Consensus 143 ~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~s~~-~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~~v~icGp~~ 219 (247)
T cd06184 143 PVTFIHAARNSAVHAFRDELEELAARLPNLKLHVFYSEP-EAGDREEDYDHAGRIDLALLRELLL--PADADFYLCGPVP 219 (247)
T ss_pred cEEEEEEcCchhhHHHHHHHHHHHhhCCCeEEEEEECCC-CcccccccccccCccCHHHHhhccC--CCCCEEEEECCHH
Confidence 899999999999999999999999888899999999876 333 356789999877776443 3568999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCEEE
Q 002724 865 MIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 865 mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
|++ ++++.|+++|++ +++||.
T Consensus 220 m~~-~v~~~l~~~G~~-~~~i~~ 240 (247)
T cd06184 220 FMQ-AVREGLKALGVP-AERIHY 240 (247)
T ss_pred HHH-HHHHHHHHcCCC-HHHeee
Confidence 997 999999999999 888875
No 35
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.97 E-value=8.5e-31 Score=276.94 Aligned_cols=212 Identities=25% Similarity=0.440 Sum_probs=181.7
Q ss_pred EEEEEEEecCceeeeeeccCC-------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCCh
Q 002724 652 KLVEKILISHDVRLFRFALPQ-------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGL 718 (888)
Q Consensus 652 ~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~ 718 (888)
+|++++.++++++.|+|+++. ||||+.|. ...|+|||+|.+. .+.++|.||.+ + +|.
T Consensus 2 ~v~~i~~~t~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~--------~-~G~ 71 (231)
T cd06191 2 RVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRV--------P-GGR 71 (231)
T ss_pred EEEEEEecCCCcEEEEEeCCCCCCCCCCCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEEC--------C-CCc
Confidence 689999999999999999764 69998764 4579999999886 68999999985 2 689
Q ss_pred hcHHHh-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecC
Q 002724 719 MSQYLD-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANR 797 (888)
Q Consensus 719 ~S~~L~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~R 797 (888)
+|.+|. .+++|+.|.|+||+|+|.+. +...++++||||||||||+++|++++++. ....++.|+|++|
T Consensus 72 ~s~~l~~~~~~Gd~v~i~gP~G~f~l~----------~~~~~~~lliagG~Gitp~~s~~~~~~~~-~~~~~v~l~~~~r 140 (231)
T cd06191 72 VSNYLREHIQPGMTVEVMGPQGHFVYQ----------PQPPGRYLLVAAGSGITPLMAMIRATLQT-APESDFTLIHSAR 140 (231)
T ss_pred cchHHHhcCCCCCEEEEeCCccceEeC----------CCCCCcEEEEecCccHhHHHHHHHHHHhc-CCCCCEEEEEecC
Confidence 999995 79999999999999998875 23457899999999999999999999876 3467899999999
Q ss_pred CCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 798 TEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 798 t~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
+.+|+++++||++|++++++++++++++++. .+.|.+..|++..++.+..++. ..+..+|+|||++|++ ++++.|++
T Consensus 141 ~~~~~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vyicGp~~mv~-~~~~~l~~ 218 (231)
T cd06191 141 TPADMIFAQELRELADKPQRLRLLCIFTRETLDSDLLHGRIDGEQSLGAALIPD-RLEREAFICGPAGMMD-AVETALKE 218 (231)
T ss_pred CHHHHhHHHHHHHHHHhCCCeEEEEEECCCCCCccccCCcccccHHHHHHhCcc-ccCCeEEEECCHHHHH-HHHHHHHH
Confidence 9999999999999998889999999998642 3567777888887665555443 3357899999999997 99999999
Q ss_pred cCCCCCCCEEE
Q 002724 877 MNYDTKDSLLV 887 (888)
Q Consensus 877 ~Gv~~~~~I~~ 887 (888)
+|++ +++||.
T Consensus 219 ~G~~-~~~i~~ 228 (231)
T cd06191 219 LGMP-PERIHT 228 (231)
T ss_pred cCCC-HHHeee
Confidence 9999 899875
No 36
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.97 E-value=9.5e-31 Score=286.31 Aligned_cols=217 Identities=23% Similarity=0.406 Sum_probs=177.7
Q ss_pred CCCeeeEEEEEEEEecCceeeeeecc--C--------CCCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCC
Q 002724 645 PREKIPCKLVEKILISHDVRLFRFAL--P--------QEDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHP 711 (888)
Q Consensus 645 p~~~~~~~Lv~k~~ls~dv~~f~f~l--p--------~pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~ 711 (888)
|-.++.++|++++.+|+|+..|+|++ + .||||+.|. ...|+||++|.+.+.+.|+|+||.
T Consensus 2 ~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~pySias~p~~~~~l~l~Ik~------- 74 (289)
T PRK08345 2 PYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISICSSPTRKGFFELCIRR------- 74 (289)
T ss_pred CcCceeEEEEEEEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCCCCceeeEecCCCCCCCEEEEEEEe-------
Confidence 44577899999999999988888875 2 279998885 335899999998777899999997
Q ss_pred CCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 712 KFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 712 ~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
.|.+|++|+.+++|++|.|+||+|.+... .....++++|||||||||||++|++++++......+++
T Consensus 75 ----~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~---------~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~ 141 (289)
T PRK08345 75 ----AGRVTTVIHRLKEGDIVGVRGPYGNGFPV---------DEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNIT 141 (289)
T ss_pred ----CChHHHHHHhCCCCCEEEEeCCCCCCCCc---------ccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEE
Confidence 38999999999999999999999984332 11234689999999999999999999887633457999
Q ss_pred EEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccc------------cccccCHHHHHhhCCCCCCCcEEEE
Q 002724 792 VVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQY------------STGFITEAILREHVPEGSGDTLALA 859 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~------------~~Grv~~~~L~~~l~~~~~~~~vyv 859 (888)
|+|++|+.+|+++++||++|++++++|+++++++++ +.|.+ ..|++.+.+ .+...+ ..+..+|+
T Consensus 142 l~~~~r~~~d~~~~deL~~l~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~g~v~~~~-~~~~~~-~~~~~vyi 217 (289)
T PRK08345 142 LIYGAKYYEDLLFYDELIKDLAEAENVKIIQSVTRD--PEWPGCHGLPQGFIERVCKGVVTDLF-REANTD-PKNTYAAI 217 (289)
T ss_pred EEEecCCHHHhhHHHHHHHHHhcCCCEEEEEEecCC--CCCcCccccccccccccccCchhhhh-hhcCCC-ccccEEEE
Confidence 999999999999999999999888999999999874 23422 246666533 332222 34578999
Q ss_pred ECChhhHHHHHHHHHHhcCCCCCCCEEE
Q 002724 860 CGPPPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 860 CGPp~mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
|||++|++ ++.+.|+++|++ +++||.
T Consensus 218 CGP~~m~~-~v~~~L~~~Gv~-~~~i~~ 243 (289)
T PRK08345 218 CGPPVMYK-FVFKELINRGYR-PERIYV 243 (289)
T ss_pred ECCHHHHH-HHHHHHHHcCCC-HHHEEE
Confidence 99999998 999999999999 899885
No 37
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.97 E-value=1.2e-30 Score=277.72 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=178.8
Q ss_pred EEEEEEEecCceeeeeeccCC-----CCceEeee-------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChh
Q 002724 652 KLVEKILISHDVRLFRFALPQ-----EDQVLGLP-------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLM 719 (888)
Q Consensus 652 ~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp-------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~ 719 (888)
+|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+ +.++|+||.+ .+|.+
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~---------~~G~~ 70 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILV---------PDGPL 70 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEe---------cCCCC
Confidence 478999999999999999874 79998775 36799999998866 7999999986 26999
Q ss_pred cHHHhcCCCCCEEEEE-ccccceeecCCCceeecCCCC-CCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecC
Q 002724 720 SQYLDSLSVGSILDVK-GPLGHIQYTGRGNFLVHGKPK-FAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANR 797 (888)
Q Consensus 720 S~~L~~L~~Gd~V~Ik-GP~G~f~~~g~g~f~l~~~~~-~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~R 797 (888)
|.+|..+++|+.|.++ ||+|+|.+. .. ..++++|||||||||||++++++++.. ....+++|+|++|
T Consensus 71 s~~l~~l~~Gd~v~v~~gP~G~f~~~----------~~~~~~~~vlIagGtGiaP~~~~l~~~~~~-~~~~~v~l~~~~r 139 (241)
T cd06195 71 TPRLFKLKPGDTIYVGKKPTGFLTLD----------EVPPGKRLWLLATGTGIAPFLSMLRDLEIW-ERFDKIVLVHGVR 139 (241)
T ss_pred chHHhcCCCCCEEEECcCCCCceeec----------CCCCCceEEEEeeccchhhHHHHHHHHHhh-CCCCcEEEEEccC
Confidence 9999999999999999 999998765 22 457999999999999999999999854 4467999999999
Q ss_pred CCchhhhHHHHHHHHHh-CCCeEEEEEEeccccCCccccccccCHHHHH----hhCCC--CCCCcEEEEECChhhHHHHH
Q 002724 798 TEDDILLREELDDWAKK-HDRVKVWYVVEKSIKEGWQYSTGFITEAILR----EHVPE--GSGDTLALACGPPPMIQFAV 870 (888)
Q Consensus 798 t~~Dil~~dEL~~l~~~-~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~----~~l~~--~~~~~~vyvCGPp~mi~~av 870 (888)
+.+|+++++||++|+++ +++|+++++++++ ++.| +..|++++.+.+ +.+.. ...+..||+|||++|++ ++
T Consensus 140 ~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~-~~ 216 (241)
T cd06195 140 YAEELAYQDEIEALAKQYNGKFRYVPIVSRE-KENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQMID-DT 216 (241)
T ss_pred CHHHhhhHHHHHHHHhhcCCCEEEEEEECcC-CccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHHHH-HH
Confidence 99999999999999988 5799999999887 5666 567898875432 22221 12467999999999997 99
Q ss_pred HHHHHhcCCCCC------CCEEE
Q 002724 871 QPNLEKMNYDTK------DSLLV 887 (888)
Q Consensus 871 ~~~L~~~Gv~~~------~~I~~ 887 (888)
++.|+++|++ + .+||+
T Consensus 217 ~~~l~~~G~~-~~~~~~~~~~~~ 238 (241)
T cd06195 217 QELLKEKGFS-KNHRRKPGNITV 238 (241)
T ss_pred HHHHHHcCCC-ccccCCCceEEE
Confidence 9999999999 8 88874
No 38
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.97 E-value=1.4e-30 Score=272.68 Aligned_cols=204 Identities=30% Similarity=0.535 Sum_probs=173.8
Q ss_pred eEEEEEEEEecCceeeeeeccCC-----CCceEeee-------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCC
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP-------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGG 717 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp-------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG 717 (888)
+++|++++.+++|++.|+|+.+. ||||+.|. ...|+|||+|.+.+ +.++|+||++ |++|
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~--------~~~g 72 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSY--------PDHD 72 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEc--------CCCC
Confidence 57899999999999999999875 79998865 25799999998865 7999999986 2347
Q ss_pred hhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecC
Q 002724 718 LMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANR 797 (888)
Q Consensus 718 ~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~R 797 (888)
.+|.+|.++++|+.|.++||+|+|.+. ++++||||||||||+++++++++.. ....+++|+|++|
T Consensus 73 ~~s~~l~~l~~G~~v~i~gP~G~~~~~--------------~~~vlia~GtGiaP~~s~l~~~~~~-~~~~~v~l~~~~r 137 (218)
T cd06196 73 GVTEQLGRLQPGDTLLIEDPWGAIEYK--------------GPGVFIAGGAGITPFIAILRDLAAK-GKLEGNTLIFANK 137 (218)
T ss_pred cHhHHHHhCCCCCEEEEECCccceEec--------------CceEEEecCCCcChHHHHHHHHHhC-CCCceEEEEEecC
Confidence 899999999999999999999997542 4689999999999999999999875 4457899999999
Q ss_pred CCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhc
Q 002724 798 TEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKM 877 (888)
Q Consensus 798 t~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~ 877 (888)
+.+|+++++||++|. ++++.++++++...+ +..|+++++++++.+.. ....||+|||++|++ ++++.|.++
T Consensus 138 ~~~~~~~~~el~~l~----~~~~~~~~s~~~~~~--~~~g~~~~~~l~~~~~~--~~~~vyiCGp~~m~~-~~~~~l~~~ 208 (218)
T cd06196 138 TEKDIILKDELEKML----GLKFINVVTDEKDPG--YAHGRIDKAFLKQHVTD--FNQHFYVCGPPPMEE-AINGALKEL 208 (218)
T ss_pred CHHHHhhHHHHHHhh----cceEEEEEcCCCCCC--eeeeEECHHHHHHhcCC--CCCEEEEECCHHHHH-HHHHHHHHc
Confidence 999999999999985 467777777652222 35799998888887642 346899999999997 999999999
Q ss_pred CCCCCCCEEE
Q 002724 878 NYDTKDSLLV 887 (888)
Q Consensus 878 Gv~~~~~I~~ 887 (888)
|++ +++||.
T Consensus 209 G~~-~~~i~~ 217 (218)
T cd06196 209 GVP-EDSIVF 217 (218)
T ss_pred CCC-HHHEec
Confidence 999 998874
No 39
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.97 E-value=1.8e-30 Score=296.32 Aligned_cols=217 Identities=22% Similarity=0.379 Sum_probs=185.1
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC--------CCceEeee------ee--eeeeecccCCCCCcEEEEEEEEEeecC
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP------LC--MRAYTPTSSVDEVGHFDLVVKIYFKGV 709 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp------~~--~R~YTp~S~~~~~g~leL~IK~y~~~~ 709 (888)
..+.+++|++++.++++++.|+|+.+. ||||+.|. .. .|+|||+|.+. .+.++|+||.+
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~-~~~l~~~Vk~~---- 226 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN-GKYYRISVKRE---- 226 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCCCCCCCCeEEEEEecCCccccceeEEEeeeCCC-CCeEEEEEEEC----
Confidence 467889999999999999999998742 69998875 12 39999999876 46899999985
Q ss_pred CCCCCCCChhcHHHh-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCc
Q 002724 710 HPKFPNGGLMSQYLD-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDET 788 (888)
Q Consensus 710 ~~~~P~gG~~S~~L~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~ 788 (888)
+ +|.+|.+|. .+++|+.|.|+||+|+|.+. ....++++||||||||||+++|+++++.. ....
T Consensus 227 ----~-~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l~----------~~~~~~~vlIagGtGIaP~~s~l~~~~~~-~~~~ 290 (399)
T PRK13289 227 ----A-GGKVSNYLHDHVNVGDVLELAAPAGDFFLD----------VASDTPVVLISGGVGITPMLSMLETLAAQ-QPKR 290 (399)
T ss_pred ----C-CCeehHHHhhcCCCCCEEEEEcCccccccC----------CCCCCcEEEEecCccHHHHHHHHHHHHhc-CCCC
Confidence 2 699999995 59999999999999998765 23467999999999999999999999866 4567
Q ss_pred eEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccc----cccccCHHHHHhhCCCCCCCcEEEEECChh
Q 002724 789 EMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQY----STGFITEAILREHVPEGSGDTLALACGPPP 864 (888)
Q Consensus 789 ~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~----~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~ 864 (888)
+++|+|++|+.+|+++++||++|++++++|+++++++++..++|.+ ..|+++.+.+.+.+.. .+..+|+|||++
T Consensus 291 ~v~l~~~~r~~~~~~~~~eL~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~l~~~~~~--~~~~vyiCGp~~ 368 (399)
T PRK13289 291 PVHFIHAARNGGVHAFRDEVEALAARHPNLKAHTWYREPTEQDRAGEDFDSEGLMDLEWLEAWLPD--PDADFYFCGPVP 368 (399)
T ss_pred CEEEEEEeCChhhchHHHHHHHHHHhCCCcEEEEEECCCccccccCCcccccCcccHHHHHhhCCC--CCCEEEEECCHH
Confidence 9999999999999999999999999889999999998763333322 3599998888877652 368899999999
Q ss_pred hHHHHHHHHHHhcCCCCCCCEEE
Q 002724 865 MIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 865 mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
|++ ++++.|++.|++ +++||.
T Consensus 369 m~~-~v~~~L~~~Gv~-~~~I~~ 389 (399)
T PRK13289 369 FMQ-FVAKQLLELGVP-EERIHY 389 (399)
T ss_pred HHH-HHHHHHHHcCCC-HHHeee
Confidence 997 999999999999 888874
No 40
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.97 E-value=2.1e-30 Score=274.01 Aligned_cols=214 Identities=28% Similarity=0.456 Sum_probs=180.0
Q ss_pred EEEEEEecCceeeeeeccCC-----CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHH
Q 002724 653 LVEKILISHDVRLFRFALPQ-----EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYL 723 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L 723 (888)
|++++.+++|++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ ++|.+|.+|
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~~~~~~~~vk~~---------~~G~~s~~l 71 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGPADFLPGQYALLALPGVEGARAYSMANLANASGEWEFIIKRK---------PGGAASNAL 71 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCccccCCCCEEEEECCCCCcccCccCCcCCCCCCEEEEEEEEc---------CCCcchHHH
Confidence 46789999999999998864 79998876 3789999999888778999999986 268999999
Q ss_pred h-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCC-CCCceEEEEEecCCCch
Q 002724 724 D-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDP-EDETEMYVVYANRTEDD 801 (888)
Q Consensus 724 ~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~-~~~~~i~Li~~~Rt~~D 801 (888)
. .+++|++|.|+||+|.+.+. ....++++||||||||||++++++++++.. ....+++|+|++|+.+|
T Consensus 72 ~~~~~~g~~v~v~gP~G~~~~~----------~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~ 141 (232)
T cd06190 72 FDNLEPGDELELDGPYGLAYLR----------PDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSD 141 (232)
T ss_pred hhcCCCCCEEEEECCcccceec----------CCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHH
Confidence 5 58999999999999998765 234579999999999999999999998752 34679999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEecccc---CCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcC
Q 002724 802 ILLREELDDWAKKHDRVKVWYVVEKSIK---EGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMN 878 (888)
Q Consensus 802 il~~dEL~~l~~~~~~f~v~~~~s~~~~---~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~G 878 (888)
+++++||++|.+.+++|+++++++++.. ..|.+..|++++ .+.+.+.....+..||+|||++|++ ++.+.|.+.|
T Consensus 142 ~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGp~~m~~-~v~~~l~~~g 219 (232)
T cd06190 142 LCALDELSALVALGARLRVTPAVSDAGSGSAAGWDGPTGFVHE-VVEATLGDRLAEFEFYFAGPPPMVD-AVQRMLMIEG 219 (232)
T ss_pred HhhHHHHHHHHHhCCCEEEEEEeCCCCCCcCCCccCCcCcHHH-HHHhhccCCccccEEEEECCHHHHH-HHHHHHHHhC
Confidence 9999999999998889999999886522 258888999986 5666665434568999999999997 8999998887
Q ss_pred CCCCCCEEE
Q 002724 879 YDTKDSLLV 887 (888)
Q Consensus 879 v~~~~~I~~ 887 (888)
+..+++||.
T Consensus 220 ~~~~~~i~~ 228 (232)
T cd06190 220 VVPFDQIHF 228 (232)
T ss_pred CCChHheee
Confidence 532778874
No 41
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.97 E-value=2.1e-30 Score=272.11 Aligned_cols=210 Identities=26% Similarity=0.463 Sum_probs=180.4
Q ss_pred EEEEEEecCceeeeeeccCC-----CCceEeee-----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHH
Q 002724 653 LVEKILISHDVRLFRFALPQ-----EDQVLGLP-----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQY 722 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp-----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~ 722 (888)
|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ .+|.+|.+
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~~~~~pGq~i~l~~~~~~~~~r~ysi~s~~~~~~~~~~~i~~~---------~~G~~s~~ 71 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPGRPRTWRAYSPANPPNEDGEIEFHVRAV---------PGGRVSNA 71 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCCCCcCCCceEEEEcCCCCCcceeccccCCCCCCCEEEEEEEeC---------CCCcchHH
Confidence 56889999999999998865 79998776 2579999999988778999999985 26999999
Q ss_pred Hhc-CCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCch
Q 002724 723 LDS-LSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDD 801 (888)
Q Consensus 723 L~~-L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~D 801 (888)
|.+ +++|+.|.|.||+|.|.+. ....++++||||||||||+++|+++++.. ....+++|+|++|+.+|
T Consensus 72 l~~~l~~G~~v~i~gP~G~~~~~----------~~~~~~~lliagG~GI~p~~sll~~~~~~-~~~~~v~l~~~~~~~~~ 140 (224)
T cd06187 72 LHDELKVGDRVRLSGPYGTFYLR----------RDHDRPVLCIAGGTGLAPLRAIVEDALRR-GEPRPVHLFFGARTERD 140 (224)
T ss_pred HhhcCccCCEEEEeCCccceEec----------CCCCCCEEEEecCcCHHHHHHHHHHHHhc-CCCCCEEEEEecCChhh
Confidence 965 9999999999999998765 22357899999999999999999999876 34578999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCC
Q 002724 802 ILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDT 881 (888)
Q Consensus 802 il~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~ 881 (888)
+++.++|+++++++++++++++++++ ++.|.+..|++++.+. +.... ..++.+|+|||++|++ .+++.|+++|++
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~-~~~~~-~~~~~v~vcGp~~~~~-~v~~~l~~~G~~- 215 (224)
T cd06187 141 LYDLEGLLALAARHPWLRVVPVVSHE-EGAWTGRRGLVTDVVG-RDGPD-WADHDIYICGPPAMVD-ATVDALLARGAP- 215 (224)
T ss_pred hcChHHHHHHHHhCCCeEEEEEeCCC-CCccCCCcccHHHHHH-Hhccc-cccCEEEEECCHHHHH-HHHHHHHHcCCC-
Confidence 99999999999888999999888876 5558888899988554 33322 3568899999999997 999999999999
Q ss_pred CCCEEE
Q 002724 882 KDSLLV 887 (888)
Q Consensus 882 ~~~I~~ 887 (888)
+++|+.
T Consensus 216 ~~~i~~ 221 (224)
T cd06187 216 PERIHF 221 (224)
T ss_pred HHHeec
Confidence 898874
No 42
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.97 E-value=3.7e-30 Score=294.58 Aligned_cols=228 Identities=22% Similarity=0.432 Sum_probs=191.4
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee-----------------------------------eee
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP-----------------------------------LCM 683 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp-----------------------------------~~~ 683 (888)
....+++|++++.++++++.|+|+++. ||||+.|. ...
T Consensus 131 ~~~~~~~V~~~~~ls~~i~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (409)
T PRK05464 131 VKKWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVI 210 (409)
T ss_pred ceEEEEEEEEcccCCchhheEEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCcee
Confidence 345689999999999999999998862 79998774 246
Q ss_pred eeeecccCCCCCcEEEEEEEEEeec-CCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEE
Q 002724 684 RAYTPTSSVDEVGHFDLVVKIYFKG-VHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLA 762 (888)
Q Consensus 684 R~YTp~S~~~~~g~leL~IK~y~~~-~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~iv 762 (888)
|+|||+|.+.+.+.++|+||.+... .+.+.| +|.+|.+|..+++||.|.|.||+|+|... ...++++
T Consensus 211 R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~-----------~~~~~iv 278 (409)
T PRK05464 211 RAYSMANYPEEKGIIMLNVRIATPPPGNPDVP-PGIMSSYIFSLKPGDKVTISGPFGEFFAK-----------DTDAEMV 278 (409)
T ss_pred eeeccCCCCCCCCeEEEEEEEeecCCCcCCCC-CCchhhHHHhCCCCCEEEEEccccCcEec-----------CCCceEE
Confidence 9999999998788999999986321 111244 69999999999999999999999998765 2457999
Q ss_pred EEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccCH
Q 002724 763 MLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFITE 841 (888)
Q Consensus 763 mIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~~ 841 (888)
|||||||||||++|++++++......+++|+|++|+.+|++++++|++|++++++|+++++++++. .+.|.+..|++++
T Consensus 279 lIAgGtGIaP~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~ 358 (409)
T PRK05464 279 FIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGFIHN 358 (409)
T ss_pred EEEeccChhHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccceeCH
Confidence 999999999999999988876445678999999999999999999999999999999999988642 3568888999998
Q ss_pred HHHHhhCCC--CCCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEE
Q 002724 842 AILREHVPE--GSGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 842 ~~L~~~l~~--~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
.++++.+.. ...+..||+|||++|++ ++.+.|+++|++ +++||+
T Consensus 359 ~l~~~~l~~~~~~~~~~vyiCGP~~m~~-av~~~L~~~Gv~-~~~I~~ 404 (409)
T PRK05464 359 VLYENYLKDHEAPEDCEYYMCGPPMMNA-AVIKMLKDLGVE-DENILL 404 (409)
T ss_pred HHHHhhhhhcCCCCCeEEEEECCHHHHH-HHHHHHHHcCCC-HHHEEE
Confidence 666555421 13457899999999997 999999999999 999985
No 43
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.97 E-value=3.9e-30 Score=288.95 Aligned_cols=218 Identities=24% Similarity=0.375 Sum_probs=184.0
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC---------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCC
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ---------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPK 712 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~---------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~ 712 (888)
++.++|++++.++++++.|+|+.|. ||||+.|. ...|+|||+|.+. .+.|+|+||.+
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~-~~~l~i~vk~~------- 72 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAEDYRFAPGQHLTLRREVDGEELRRSYSICSAPA-PGEIRVAVKKI------- 72 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCccccccCCCCCCCeEEEEEecCCcEeeeeccccCCCC-CCcEEEEEEEe-------
Confidence 4678999999999999999999752 79998775 4579999999875 47899999996
Q ss_pred CCCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 713 FPNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 713 ~P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
+ +|.+|.|| +.+++|+.|.|.||+|+|.+.. .....++++|||||||||||++|+++++.. +...+++
T Consensus 73 -~-~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~--------~~~~~~~~lliagG~GItP~~s~l~~~~~~-~~~~~v~ 141 (352)
T TIGR02160 73 -P-GGLFSTWANDEIRPGDTLEVMAPQGLFTPDL--------STPHAGHYVAVAAGSGITPMLSIAETVLAA-EPRSTFT 141 (352)
T ss_pred -C-CCcchHHHHhcCCCCCEEEEeCCceeeecCC--------CccccccEEEEeccccHhHHHHHHHHHHhc-CCCceEE
Confidence 2 68999999 5899999999999999987651 112347999999999999999999999875 4457899
Q ss_pred EEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHhhCCC---CCCCcEEEEECChhhHH
Q 002724 792 VVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREHVPE---GSGDTLALACGPPPMIQ 867 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~---~~~~~~vyvCGPp~mi~ 867 (888)
|+|++|+.+|+++++||++|++.++ +|+++++++++ .+.|.+..||++...+.+.+.. ......+|+|||++||+
T Consensus 142 l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~~~~~gr~~~~~l~~~l~~~~~~~~~~~vyiCGp~~m~~ 220 (352)
T TIGR02160 142 LVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSRE-PREAPLLSGRLDGERLAALLDSLIDVDRADEWFLCGPQAMVD 220 (352)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCC-CcCcccccCccCHHHHHHHHHhccCcccCCEEEEECCHHHHH
Confidence 9999999999999999999998885 69999999876 5667777899987666655432 13346899999999997
Q ss_pred HHHHHHHHhcCCCCCCCEEE
Q 002724 868 FAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 868 ~av~~~L~~~Gv~~~~~I~~ 887 (888)
++++.|+++|++ +++||.
T Consensus 221 -~v~~~L~~~Gv~-~~~i~~ 238 (352)
T TIGR02160 221 -DAEQALTGLGVP-AGRVHL 238 (352)
T ss_pred -HHHHHHHHcCCC-HHHEEE
Confidence 999999999999 899885
No 44
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.97 E-value=1.1e-29 Score=270.66 Aligned_cols=212 Identities=25% Similarity=0.461 Sum_probs=182.5
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC------CCceEeee------eeeeeeecccCCC-CCcEEEEEEEEEeecCCCC
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ------EDQVLGLP------LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPK 712 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp------~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~ 712 (888)
.+...++|++++.+++++++|+|+.+. ||||+.|. ...|+|||+|.+. +.+.|+|+||.+
T Consensus 15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~------- 87 (243)
T cd06216 15 ARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ------- 87 (243)
T ss_pred cceeEEEEEEEEEcCCCcEEEEEecCCCCCCcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc-------
Confidence 467789999999999999999999763 79998765 4579999999887 678999999985
Q ss_pred CCCCChhcHHHh-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 713 FPNGGLMSQYLD-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 713 ~P~gG~~S~~L~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
+ +|.+|.+|. .+++|++|.|+||+|.|.+. ....++++||||||||||++++++++++. .+..+++
T Consensus 88 -~-~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~----------~~~~~~~v~iagG~Giap~~s~l~~~~~~-~~~~~i~ 154 (243)
T cd06216 88 -P-DGLVSNWLVNHLAPGDVVELSQPQGDFVLP----------DPLPPRLLLIAAGSGITPVMSMLRTLLAR-GPTADVV 154 (243)
T ss_pred -C-CCcchhHHHhcCCCCCEEEEECCceeeecC----------CCCCCCEEEEecCccHhHHHHHHHHHHhc-CCCCCEE
Confidence 2 689999996 59999999999999998765 22368999999999999999999999876 3567899
Q ss_pred EEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHH
Q 002724 792 VVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQ 871 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~ 871 (888)
|+|++|+.+|+++.++|++|++++++++++++++++ +..|+++.+.+++...+ ..+..+|+|||++|++ +++
T Consensus 155 l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~s~~------~~~g~~~~~~l~~~~~~-~~~~~vyvcGp~~m~~-~~~ 226 (243)
T cd06216 155 LLYYARTREDVIFADELRALAAQHPNLRLHLLYTRE------ELDGRLSAAHLDAVVPD-LADRQVYACGPPGFLD-AAE 226 (243)
T ss_pred EEEEcCChhhhHHHHHHHHHHHhCCCeEEEEEEcCC------ccCCCCCHHHHHHhccC-cccCeEEEECCHHHHH-HHH
Confidence 999999999999999999999888899998888753 45689998888887653 3457999999999997 999
Q ss_pred HHHHhcCCCCCCCEEE
Q 002724 872 PNLEKMNYDTKDSLLV 887 (888)
Q Consensus 872 ~~L~~~Gv~~~~~I~~ 887 (888)
+.|++.|++ ++|+.
T Consensus 227 ~~l~~~Gv~--~~i~~ 240 (243)
T cd06216 227 ELLEAAGLA--DRLHT 240 (243)
T ss_pred HHHHHCCCc--cceee
Confidence 999999997 56763
No 45
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.97 E-value=3.5e-30 Score=269.22 Aligned_cols=209 Identities=31% Similarity=0.520 Sum_probs=177.3
Q ss_pred EEEEecCceeeeeeccCC-----CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHH
Q 002724 655 EKILISHDVRLFRFALPQ-----EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYL 723 (888)
Q Consensus 655 ~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L 723 (888)
+++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ + +|.+|++|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~--------~-~G~~s~~l 72 (223)
T cd00322 2 ATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIV--------P-GGPFSAWL 72 (223)
T ss_pred ceEEecCCeEEEEEecCCCCCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEe--------C-CCchhhHH
Confidence 567889999999999874 79998876 4689999999988778999999996 1 59999999
Q ss_pred hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhh
Q 002724 724 DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDIL 803 (888)
Q Consensus 724 ~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil 803 (888)
.++++|+.|.|+||+|+|... ....++++||||||||||+++++++++.. ....+++|+|++|+.+|++
T Consensus 73 ~~~~~G~~v~i~gP~G~~~~~----------~~~~~~~v~ia~G~Giap~~~~l~~~~~~-~~~~~v~l~~~~r~~~~~~ 141 (223)
T cd00322 73 HDLKPGDEVEVSGPGGDFFLP----------LEESGPVVLIAGGIGITPFRSMLRHLAAD-KPGGEITLLYGARTPADLL 141 (223)
T ss_pred hcCCCCCEEEEECCCcccccC----------cccCCcEEEEecCCchhHHHHHHHHHHhh-CCCCcEEEEEecCCHHHhh
Confidence 999999999999999998644 24568999999999999999999999876 3568899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCH-HHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCCC
Q 002724 804 LREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITE-AILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDTK 882 (888)
Q Consensus 804 ~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~-~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~ 882 (888)
++++|++|++.+++++++++++++ ...|.+..+++.. +.+..... ...+..+|+|||++|++ ++++.|.++|++ +
T Consensus 142 ~~~el~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~yvCGp~~m~~-~~~~~L~~~gv~-~ 217 (223)
T cd00322 142 FLDELEELAKEGPNFRLVLALSRE-SEAKLGPGGRIDREAEILALLP-DDSGALVYICGPPAMAK-AVREALVSLGVP-E 217 (223)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCC-CCCCCcccceeeHHHHHHhhcc-cccCCEEEEECCHHHHH-HHHHHHHHcCCC-H
Confidence 999999999988899999999887 5666666666652 22333332 24578999999999997 999999999999 8
Q ss_pred CCEEE
Q 002724 883 DSLLV 887 (888)
Q Consensus 883 ~~I~~ 887 (888)
++||.
T Consensus 218 ~~i~~ 222 (223)
T cd00322 218 ERIHT 222 (223)
T ss_pred HHccc
Confidence 88874
No 46
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.97 E-value=4.6e-30 Score=325.95 Aligned_cols=237 Identities=25% Similarity=0.488 Sum_probs=205.8
Q ss_pred CCCCceecCCCCeeeEEEEEEE---EecCceeeeeeccCC--------CCceEeee------eeeeeeecccCCCCCcEE
Q 002724 636 APTRSVALVPREKIPCKLVEKI---LISHDVRLFRFALPQ--------EDQVLGLP------LCMRAYTPTSSVDEVGHF 698 (888)
Q Consensus 636 ~~~~~v~l~p~~~~~~~Lv~k~---~ls~dv~~f~f~lp~--------pGQ~l~Lp------~~~R~YTp~S~~~~~g~l 698 (888)
.+.++.+|++++|.+++|++++ .++++++.|+|++|. +|||+.|. ...|+|||+|.+.+.+.|
T Consensus 902 ~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i 981 (1167)
T PTZ00306 902 LQKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVI 981 (1167)
T ss_pred HhccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeE
Confidence 4567899999999999999998 569999999999874 69998886 467999999999888899
Q ss_pred EEEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeec--CCCceeecCCCCCCceEEEEECCcCHHHHHHH
Q 002724 699 DLVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYT--GRGNFLVHGKPKFAKKLAMLAGGTGITPIYQI 776 (888)
Q Consensus 699 eL~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~--g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~l 776 (888)
+|+||. + +|.+|++|+.|++|++|+|+||.|.+.+. ..+.|.++ ....++++|||||||||||++|
T Consensus 982 ~l~Vr~---------~-~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~--~~~~~~ivlIAGGtGItP~~sm 1049 (1167)
T PTZ00306 982 SILARG---------D-KGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFR--GHVIRKLALIAGGTGVAPMLQI 1049 (1167)
T ss_pred EEEEEc---------C-CChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeec--cCCCceEEEEECCccHhHHHHH
Confidence 999985 1 69999999999999999999998855432 23456665 3456899999999999999999
Q ss_pred HHHHHcCC--CCCceEEEEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHhhCCCCCC
Q 002724 777 MQAILKDP--EDETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSG 853 (888)
Q Consensus 777 l~~ll~~~--~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~ 853 (888)
|+++++++ .+.++++|||++|+.+|++|++||++|+++++ +|+++++++++ .++|.+..|+|++.+|++.++.+..
T Consensus 1050 l~~~l~~~~~~~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~-~~~w~~~~G~i~~~~l~~~l~~~~~ 1128 (1167)
T PTZ00306 1050 IRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNP-PEGWTDGVGFVDRALLQSALQPPSK 1128 (1167)
T ss_pred HHHHHhCcccCCCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCC-CcccCCCCCCCCHHHHHHhcCCCCC
Confidence 99998763 23579999999999999999999999999885 79999999987 6789888999999889988765556
Q ss_pred CcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEE
Q 002724 854 DTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 854 ~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
+..||+|||++|++ ++++.|+++|++ +++||.
T Consensus 1129 ~~~vyiCGP~~mv~-~v~~~L~~~G~~-~~~I~~ 1160 (1167)
T PTZ00306 1129 DLLVAICGPPVMQR-AVKADLLALGYN-MELVRT 1160 (1167)
T ss_pred CeEEEEeCCHHHHH-HHHHHHHHcCCC-HHHeEE
Confidence 78899999999997 999999999999 999985
No 47
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.97 E-value=5.7e-30 Score=292.72 Aligned_cols=228 Identities=21% Similarity=0.422 Sum_probs=190.2
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee-----------------------------------eee
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP-----------------------------------LCM 683 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp-----------------------------------~~~ 683 (888)
.+..+++|++++.++++++.|+|+++. ||||+.+. ...
T Consensus 127 ~~~~~~~v~~~~~~s~~i~~l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (405)
T TIGR01941 127 VKKWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETV 206 (405)
T ss_pred cceeeeEEEEcccccchhheEEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccc
Confidence 345679999999999999999998863 79998774 235
Q ss_pred eeeecccCCCCCcEEEEEEEEEeecC-CCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEE
Q 002724 684 RAYTPTSSVDEVGHFDLVVKIYFKGV-HPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLA 762 (888)
Q Consensus 684 R~YTp~S~~~~~g~leL~IK~y~~~~-~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~iv 762 (888)
|+|||+|.+.+.+.++|+||+..+.. +++.| +|.+|.+|.++++||.|.|+||+|.|.+. ...++++
T Consensus 207 R~ySias~p~~~~~l~~~vr~~~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~-----------~~~~~lv 274 (405)
T TIGR01941 207 RAYSMANYPAEKGIIKLNVRIATPPFINSDIP-PGIMSSYIFSLKPGDKVTISGPFGEFFAK-----------DTDAEMV 274 (405)
T ss_pred eeecCCCCCCCCCeEEEEEEEeccCcccCCCC-CCcHHHHHhcCCCcCEEEEEeccCCCeec-----------CCCCCEE
Confidence 99999999988899999999852211 12345 79999999999999999999999998765 2357899
Q ss_pred EEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccCH
Q 002724 763 MLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFITE 841 (888)
Q Consensus 763 mIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~~ 841 (888)
|||||||||||++|+++++.......+++|+|++|+.+|++++++|+++++++++|+++++++++. .+.|.+..|++++
T Consensus 275 lIAgGtGIaP~lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v~~ 354 (405)
T TIGR01941 275 FIGGGAGMAPMRSHIFDQLKRLKSKRKISFWYGARSLREMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFIHN 354 (405)
T ss_pred EEecCcCcchHHHHHHHHHhcCCCCCeEEEEEecCCHHHHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCccceeCH
Confidence 999999999999999987765344678999999999999999999999999999999999988642 4578889999988
Q ss_pred HHHHhhCCC--CCCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEE
Q 002724 842 AILREHVPE--GSGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 842 ~~L~~~l~~--~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
.+..+.+.. ...+..||+|||++|++ ++.+.|+++|++ +++||.
T Consensus 355 ~l~~~~l~~~~~~~~~~vylCGP~~m~~-av~~~L~~~Gv~-~~~I~~ 400 (405)
T TIGR01941 355 VLYENYLKDHDAPEDCEFYMCGPPMMNA-AVIKMLEDLGVE-RENILL 400 (405)
T ss_pred HHHHhhhcccCCCCCeEEEEeCCHHHHH-HHHHHHHHcCCC-HHHEEE
Confidence 665554431 13457899999999997 999999999999 999985
No 48
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.97 E-value=9.2e-30 Score=270.41 Aligned_cols=215 Identities=29% Similarity=0.464 Sum_probs=184.5
Q ss_pred eeEEEEEEEEecCceeeeeeccCC---------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCC
Q 002724 649 IPCKLVEKILISHDVRLFRFALPQ---------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKF 713 (888)
Q Consensus 649 ~~~~Lv~k~~ls~dv~~f~f~lp~---------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~ 713 (888)
+.++|++++.++++++.|+|+++. +|||+.|. ...|+|||+|.+.+. .|+|+||.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~-~l~~~i~~~-------- 72 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDD-ELRITVKRV-------- 72 (241)
T ss_pred ceEEEEEEEecCCCeEEEEEecCcccCCCCCcCCCCeEEEEeecCCCeeeeeeeecCCCCCC-cEEEEEEEc--------
Confidence 578999999999999999999863 69997765 368999999987654 899999986
Q ss_pred CCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCC-CCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 714 PNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPK-FAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 714 P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~-~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
.+|.+|.+| +.+++|++|.|+||+|.|.+. .. ..++++||||||||||++++++++++. ....+++
T Consensus 73 -~~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~----------~~~~~~~~llia~GtGiap~~~~~~~~~~~-~~~~~v~ 140 (241)
T cd06214 73 -PGGRFSNWANDELKAGDTLEVMPPAGRFTLP----------PLPGARHYVLFAAGSGITPVLSILKTALAR-EPASRVT 140 (241)
T ss_pred -CCCccchhHHhccCCCCEEEEeCCccccccC----------CCCCCCcEEEEecccChhhHHHHHHHHHhc-CCCCcEE
Confidence 269999999 589999999999999998776 22 468999999999999999999999876 3367899
Q ss_pred EEEecCCCchhhhHHHHHHHHHhC-CCeEEEEEEeccccCCccccccccCHHHHHhhCCC---CCCCcEEEEECChhhHH
Q 002724 792 VVYANRTEDDILLREELDDWAKKH-DRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPE---GSGDTLALACGPPPMIQ 867 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~-~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~---~~~~~~vyvCGPp~mi~ 867 (888)
|+|++|+.+|+++.++|++|++.+ ++|++.++++++ +..|.+..|+++++++.+.+.. ......||+|||+.|++
T Consensus 141 l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~icGp~~mv~ 219 (241)
T cd06214 141 LVYGNRTEASVIFREELADLKARYPDRLTVIHVLSRE-QGDPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMD 219 (241)
T ss_pred EEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCC-CCCcccccCccCHHHHHHhhhhhcccccCcEEEEECCHHHHH
Confidence 999999999999999999998887 489998888876 6678778899998777665432 23468999999999997
Q ss_pred HHHHHHHHhcCCCCCCCEEE
Q 002724 868 FAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 868 ~av~~~L~~~Gv~~~~~I~~ 887 (888)
.+.+.|+++|++ +++||.
T Consensus 220 -~v~~~l~~~G~~-~~~i~~ 237 (241)
T cd06214 220 -AVEAALLELGVP-AERIHR 237 (241)
T ss_pred -HHHHHHHHcCCC-HHHeec
Confidence 999999999999 888874
No 49
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.97 E-value=1.8e-29 Score=270.42 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=169.7
Q ss_pred CeeeEEEEEEEEecCceeeeeeccCC----CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCC
Q 002724 647 EKIPCKLVEKILISHDVRLFRFALPQ----EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNG 716 (888)
Q Consensus 647 ~~~~~~Lv~k~~ls~dv~~f~f~lp~----pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~g 716 (888)
.|++++|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+ +.++|+||.+ + +
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~--------~-~ 72 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPVDPFTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTV--------P-E 72 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCCCCCCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEe--------C-C
Confidence 58999999999999999999998763 79997664 46799999998864 5899999986 2 6
Q ss_pred ChhcHHHhcCCCCCEEEEEcccc-ceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEe
Q 002724 717 GLMSQYLDSLSVGSILDVKGPLG-HIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYA 795 (888)
Q Consensus 717 G~~S~~L~~L~~Gd~V~IkGP~G-~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~ 795 (888)
|.+|++|+.+++|++|.|+||.| .|.+. .....++++|||||||||||++|++++++. +...+++|+|+
T Consensus 73 G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~---------~~~~~~~~vlIagGtGItP~~s~l~~~~~~-~~~~~v~l~~g 142 (248)
T PRK10926 73 GKLSPRLAALKPGDEVQVVSEAAGFFVLD---------EVPDCETLWMLATGTAIGPYLSILQEGKDL-ERFKNLVLVHA 142 (248)
T ss_pred CCcChHHHhCCCCCEEEEecCCCcceEcc---------CCCCCCeEEEEEeeeeHHHHHHHHHhhHhh-CCCCcEEEEEe
Confidence 99999999999999999999874 44333 112347999999999999999999998754 44678999999
Q ss_pred cCCCchhhhHHHHHHHHHhC-CCeEEEEEEeccccCCccccccccCHHH----HHhhCC--CCCCCcEEEEECChhhHHH
Q 002724 796 NRTEDDILLREELDDWAKKH-DRVKVWYVVEKSIKEGWQYSTGFITEAI----LREHVP--EGSGDTLALACGPPPMIQF 868 (888)
Q Consensus 796 ~Rt~~Dil~~dEL~~l~~~~-~~f~v~~~~s~~~~~~w~~~~Grv~~~~----L~~~l~--~~~~~~~vyvCGPp~mi~~ 868 (888)
+|+.+|++|++||++|++++ ++++++++++++ +.+.+..|++++.+ +.+.+. ...++..+|+|||++|++
T Consensus 143 ~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~--~~~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~CGp~~Mv~- 219 (248)
T PRK10926 143 ARYAADLSYLPLMQELEQRYEGKLRIQTVVSRE--TAPGSLTGRVPALIESGELEAAVGLPMDAETSHVMLCGNPQMVR- 219 (248)
T ss_pred CCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCC--CCCCCcCCccchhhhcchHHHHhcCCCCccCCEEEEECCHHHHH-
Confidence 99999999999999999988 589999999874 22344578887622 111111 113457899999999998
Q ss_pred HHHHHHHh-cCCC
Q 002724 869 AVQPNLEK-MNYD 880 (888)
Q Consensus 869 av~~~L~~-~Gv~ 880 (888)
++.+.|++ .|++
T Consensus 220 ~~~~~l~~~~~~~ 232 (248)
T PRK10926 220 DTQQLLKETRQMT 232 (248)
T ss_pred HHHHHHHHhcCcc
Confidence 88888865 6665
No 50
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.97 E-value=1.9e-29 Score=272.40 Aligned_cols=209 Identities=21% Similarity=0.394 Sum_probs=174.5
Q ss_pred eeEEEEEEEEecCceeeeeeccC---CCCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHH
Q 002724 649 IPCKLVEKILISHDVRLFRFALP---QEDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQY 722 (888)
Q Consensus 649 ~~~~Lv~k~~ls~dv~~f~f~lp---~pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~ 722 (888)
.+++|++++.+|++++.|+|..+ .||||+.|. ...|+|||++.+ .+.|+|+||. .|.+|++
T Consensus 8 ~~~~v~~i~~~t~~~~~~~l~~~~~~~pGQfi~l~~~~~~~~pySi~~~~--~~~~~~~Ik~-----------~G~~S~~ 74 (263)
T PRK08221 8 AAYKILDITKHTDIEYTFRVEVDGPVKPGQFFEVSLPKVGEAPISVSDYG--DGYIDLTIRR-----------VGKVTDE 74 (263)
T ss_pred ccEEEEEEeccCCcEEEEEecCCCCCCCCceEEEEeCCCCcceeeccCCC--CCEEEEEEEe-----------CCchhhH
Confidence 46999999999999999999986 389998876 335999999874 5789999997 3899999
Q ss_pred HhcCCCCCEEEEEccccc-eeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCch
Q 002724 723 LDSLSVGSILDVKGPLGH-IQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDD 801 (888)
Q Consensus 723 L~~L~~Gd~V~IkGP~G~-f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~D 801 (888)
|..+++|+.|.|+||+|. |.+. ....++++|||||||||||+++++++++...+..+++|+|++|+.+|
T Consensus 75 L~~l~~Gd~v~v~gP~G~~f~~~----------~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~ 144 (263)
T PRK08221 75 IFNLKEGDKLFLRGPYGNGFPVD----------TYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDD 144 (263)
T ss_pred HHhCCCCCEEEEECCCCCCcccC----------ccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHH
Confidence 999999999999999998 5443 23457999999999999999999999876444579999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCC
Q 002724 802 ILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDT 881 (888)
Q Consensus 802 il~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~ 881 (888)
+++++||++|++.+ .++++++++ .+.|.+..|++++.+.+..+.. ..+..+|+|||++|++ +++..|+++|++
T Consensus 145 l~~~~el~~~~~~~---~~~~~~~~~-~~~~~~~~G~v~~~l~~~~~~~-~~~~~vylCGp~~mv~-~~~~~L~~~Gv~- 217 (263)
T PRK08221 145 ILFKEDLKRWREKI---NLILTLDEG-EEGYRGNVGLVTKYIPELTLKD-IDNMQVIVVGPPIMMK-FTVLEFLKRGIK- 217 (263)
T ss_pred hhHHHHHHHHhhcC---cEEEEecCC-CCCCccCccccChhhHhccCCC-cCCeEEEEECCHHHHH-HHHHHHHHcCCC-
Confidence 99999999998653 355666666 6778888999997543322322 3567899999999998 899999999999
Q ss_pred CCCEEE
Q 002724 882 KDSLLV 887 (888)
Q Consensus 882 ~~~I~~ 887 (888)
+++||.
T Consensus 218 ~~~i~~ 223 (263)
T PRK08221 218 EENIWV 223 (263)
T ss_pred HHHEEE
Confidence 888874
No 51
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.97 E-value=2e-29 Score=264.66 Aligned_cols=208 Identities=25% Similarity=0.396 Sum_probs=172.7
Q ss_pred EEEEEEecCceeeeeeccCC-----CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHHh
Q 002724 653 LVEKILISHDVRLFRFALPQ-----EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYLD 724 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~ 724 (888)
|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.+ + +|.+|.+|.
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~~~~~~~~i~~~--------~-~G~~s~~l~ 71 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAGGLARSYSPTSLPDGDNELEFHIRRK--------P-NGAFSGWLG 71 (222)
T ss_pred CceeeecCCCEEEEEEecCCCCCcCCCCEEEEEcCCCCceeeecCCCCCCCCEEEEEEEec--------c-CCccchHHH
Confidence 56789999999999999865 79998887 5579999999988778999999986 1 589999996
Q ss_pred c-CCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhh
Q 002724 725 S-LSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDIL 803 (888)
Q Consensus 725 ~-L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil 803 (888)
. +++|+.|.|.||+|.+.+. .....++++||||||||||+++++++++.. +...+++|+|++|+.++++
T Consensus 72 ~~~~~G~~v~i~gP~G~~~~~---------~~~~~~~~v~iagG~Giap~~~~l~~~~~~-~~~~~v~l~~~~r~~~~~~ 141 (222)
T cd06194 72 EEARPGHALRLQGPFGQAFYR---------PEYGEGPLLLVGAGTGLAPLWGIARAALRQ-GHQGEIRLVHGARDPDDLY 141 (222)
T ss_pred hccCCCCEEEEecCcCCeecc---------CCCCCCCEEEEecCcchhhHHHHHHHHHhc-CCCccEEEEEecCChhhcc
Confidence 5 7999999999999998765 113457999999999999999999998865 4467899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEEEEeccccCCc-cccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCCC
Q 002724 804 LREELDDWAKKHDRVKVWYVVEKSIKEGW-QYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDTK 882 (888)
Q Consensus 804 ~~dEL~~l~~~~~~f~v~~~~s~~~~~~w-~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~ 882 (888)
+++||++|++++++++++.+++++ +..| ....+++ .+.+........+|+|||++|++ ++++.|+++|++ +
T Consensus 142 ~~~el~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~vyicGp~~m~~-~~~~~L~~~Gv~-~ 213 (222)
T cd06194 142 LHPALLWLAREHPNFRYIPCVSEG-SQGDPRVRAGRI-----AAHLPPLTRDDVVYLCGAPSMVN-AVRRRAFLAGAP-M 213 (222)
T ss_pred CHHHHHHHHHHCCCeEEEEEEccC-CCCCcccccchh-----hhhhccccCCCEEEEeCCHHHHH-HHHHHHHHcCCC-H
Confidence 999999999888999999998876 3333 2222332 22222224568999999999998 999999999999 9
Q ss_pred CCEEE
Q 002724 883 DSLLV 887 (888)
Q Consensus 883 ~~I~~ 887 (888)
++||.
T Consensus 214 ~~i~~ 218 (222)
T cd06194 214 KRIYA 218 (222)
T ss_pred HHeee
Confidence 99985
No 52
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.97 E-value=2.4e-29 Score=270.14 Aligned_cols=209 Identities=29% Similarity=0.559 Sum_probs=177.9
Q ss_pred EEEEEEecCceeeeeeccCC---------CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 653 LVEKILISHDVRLFRFALPQ---------EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~---------pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
|++++.+++++..|+|+++. ||||+.|. ...|+|||++.+.+.+.++|+||. .|.+|
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~~~pySi~s~~~~~~~l~~~Ik~-----------~G~~S 69 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVGEAPISISSDPTRRGPLELTIRR-----------VGRVT 69 (253)
T ss_pred CceEEeccCCceEEEEEeCCCccccCCcCCCCEEEEEcCCCCccceEecCCCCCCCeEEEEEEe-----------CChhh
Confidence 56889999999999988743 69998876 345999999999877899999997 38899
Q ss_pred HHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCc
Q 002724 721 QYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTED 800 (888)
Q Consensus 721 ~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~ 800 (888)
++|..+++|++|.|.||+|++... .....++++||||||||||+++|++++++...+..+++|+|++|+.+
T Consensus 70 ~~L~~l~~G~~v~i~gP~G~~f~~---------~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~ 140 (253)
T cd06221 70 EALHELKPGDTVGLRGPFGNGFPV---------EEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPE 140 (253)
T ss_pred HHHHcCCCCCEEEEECCcCCCccc---------ccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChH
Confidence 999999999999999999995443 11246899999999999999999999997644568999999999999
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCC
Q 002724 801 DILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYD 880 (888)
Q Consensus 801 Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~ 880 (888)
|++++++|++|+++ +++++.++++++ .+.|.+..|++++ .+.+.... ..+..||+|||++|++ ++.+.|++.|++
T Consensus 141 ~~~~~~~L~~l~~~-~~~~~~~~~s~~-~~~~~~~~g~v~~-~l~~~~~~-~~~~~vyicGp~~mv~-~~~~~L~~~Gv~ 215 (253)
T cd06221 141 DLLFKEELKEWAKR-SDVEVILTVDRA-EEGWTGNVGLVTD-LLPELTLD-PDNTVAIVCGPPIMMR-FVAKELLKLGVP 215 (253)
T ss_pred HcchHHHHHHHHhc-CCeEEEEEeCCC-CCCccCCccccch-hHHhcCCC-cCCcEEEEECCHHHHH-HHHHHHHHcCCC
Confidence 99999999999988 789999999876 6678888899987 44544432 2567899999999997 999999999999
Q ss_pred CCCCEEE
Q 002724 881 TKDSLLV 887 (888)
Q Consensus 881 ~~~~I~~ 887 (888)
+++||.
T Consensus 216 -~~~i~~ 221 (253)
T cd06221 216 -EEQIWV 221 (253)
T ss_pred -HHHEEE
Confidence 888885
No 53
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.97 E-value=7.4e-29 Score=267.10 Aligned_cols=210 Identities=28% Similarity=0.405 Sum_probs=180.8
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCC
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPK 712 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~ 712 (888)
..+.+++|++++.+|+|++.|+|..+. ||||+.|. .+.|+||++|.|.+...+.|.||+.
T Consensus 3 ~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~------- 75 (266)
T COG1018 3 AGFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKRE------- 75 (266)
T ss_pred CceEEEEEEEEEEecCceEEEEEEcCCCCccccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEe-------
Confidence 468899999999999999999999875 79998776 5899999999999888999999995
Q ss_pred CCCCChhcHHHh-cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 713 FPNGGLMSQYLD-SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 713 ~P~gG~~S~~L~-~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
++|.+|+||+ +|++||+|.|++|.|.|.+. .....+++|||||||||||++|++.++.. +. .++.
T Consensus 76 --~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~----------~~~~~~~llla~G~GITP~lSml~~~~~~-~~-~~v~ 141 (266)
T COG1018 76 --DGGGGSNWLHDHLKVGDTLEVSAPAGDFVLD----------DLPERKLLLLAGGIGITPFLSMLRTLLDR-GP-ADVV 141 (266)
T ss_pred --CCCcccHHHHhcCCCCCEEEEecCCCCccCC----------CCCCCcEEEEeccccHhHHHHHHHHHHHh-CC-CCEE
Confidence 3699999995 99999999999999999987 22344899999999999999999999877 34 8999
Q ss_pred EEEecCCCchhhhHHHHHHHHHhCCC-eEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHH
Q 002724 792 VVYANRTEDDILLREELDDWAKKHDR-VKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAV 870 (888)
Q Consensus 792 Li~~~Rt~~Dil~~dEL~~l~~~~~~-f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av 870 (888)
|+|++|+.+++.|++| +.+.+++++ ..+....+ |....|+++...+....++ .. ..+|+|||.+||+ ++
T Consensus 142 l~h~~R~~~~~af~de-~~l~~~~~~~~~~~~~~~------~~~~~g~~~~~~l~~~~~~-~~-r~~y~CGp~~fm~-av 211 (266)
T COG1018 142 LVHAARTPADLAFRDE-LELAAELPNALLLGLYTE------RGKLQGRIDVSRLLSAAPD-GG-REVYLCGPGPFMQ-AV 211 (266)
T ss_pred EEEecCChhhcchhhH-HHHHhhCCCCeeEEEEEe------cCCccccccHHHHhccCCC-CC-CEEEEECCHHHHH-HH
Confidence 9999999999999999 999999875 44444443 3445788888776665543 22 8999999999998 99
Q ss_pred HHHHHhcCCCCCCCEEE
Q 002724 871 QPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 871 ~~~L~~~Gv~~~~~I~~ 887 (888)
+..|+++|++ .+++|.
T Consensus 212 ~~~l~~~g~~-~~~vh~ 227 (266)
T COG1018 212 RLALEALGVP-DDRVHL 227 (266)
T ss_pred HHHHHHcCCC-hhcEEE
Confidence 9999999999 999885
No 54
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.97 E-value=4.7e-29 Score=275.21 Aligned_cols=219 Identities=16% Similarity=0.220 Sum_probs=171.8
Q ss_pred CCCeeeEEEEEEEEec-----CceeeeeeccCC-----CCceEeee--e----------eeeeeecccCCCC----CcEE
Q 002724 645 PREKIPCKLVEKILIS-----HDVRLFRFALPQ-----EDQVLGLP--L----------CMRAYTPTSSVDE----VGHF 698 (888)
Q Consensus 645 p~~~~~~~Lv~k~~ls-----~dv~~f~f~lp~-----pGQ~l~Lp--~----------~~R~YTp~S~~~~----~g~l 698 (888)
+..+.+++|++++.++ ++++.|+|+.+. +|||+.|- . ..|+|||+|.+.+ ...|
T Consensus 21 ~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~l 100 (307)
T PLN03116 21 PKAPYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTA 100 (307)
T ss_pred CCCCEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEE
Confidence 4566799999999999 899999999875 69998875 1 3699999998842 2389
Q ss_pred EEEEEEEeecC-----CCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHH
Q 002724 699 DLVVKIYFKGV-----HPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPI 773 (888)
Q Consensus 699 eL~IK~y~~~~-----~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~ 773 (888)
+|+||+...-. ....+ +|.+|.+|..+++|+.|.|+||+|.|.+.. .....++++|||||||||||
T Consensus 101 el~Vr~~~~~~~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~--------~~~~~~~~vlIAgGtGIaP~ 171 (307)
T PLN03116 101 SLCVRRAVYYDPETGKEDPAK-KGVCSNFLCDAKPGDKVQITGPSGKVMLLP--------EEDPNATHIMVATGTGIAPF 171 (307)
T ss_pred EEEEEEEEEecCCcCCCCCcc-CcchhhhHhhCCCCCEEEEEEecCCceeCC--------CCCCCCcEEEEecCccHHHH
Confidence 99999752100 00113 799999998899999999999999987641 01345799999999999999
Q ss_pred HHHHHHHHcCCC----CCceEEEEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHhhC
Q 002724 774 YQIMQAILKDPE----DETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREHV 848 (888)
Q Consensus 774 ~~ll~~ll~~~~----~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l 848 (888)
++|+++++.... ...+++|+|++|+.+|++|++||++|+++++ +|+++++++++ .+.|.+..|++++. |.+.+
T Consensus 172 ~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~-~~~~~g~~g~v~~~-l~~~~ 249 (307)
T PLN03116 172 RGFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSRE-QKNKKGGKMYVQDK-IEEYS 249 (307)
T ss_pred HHHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccC-CcccCCCccchhhH-HHHHH
Confidence 999999876421 1367999999999999999999999999986 89999999987 66787777888763 33321
Q ss_pred ----CCCCCCcEEEEECChhhHHHHHHHHHH
Q 002724 849 ----PEGSGDTLALACGPPPMIQFAVQPNLE 875 (888)
Q Consensus 849 ----~~~~~~~~vyvCGPp~mi~~av~~~L~ 875 (888)
.....+..||+|||++||+ ++...|.
T Consensus 250 ~~~~~~~~~~~~vYiCGp~~mv~-~v~~~L~ 279 (307)
T PLN03116 250 DEIFKLLDNGAHIYFCGLKGMMP-GIQDTLK 279 (307)
T ss_pred HHHHhhhcCCcEEEEeCCHHHHH-HHHHHHH
Confidence 1112467899999999997 6665554
No 55
>PRK05713 hypothetical protein; Provisional
Probab=99.97 E-value=4e-29 Score=276.36 Aligned_cols=206 Identities=23% Similarity=0.324 Sum_probs=172.0
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC-----CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChh
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLM 719 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~ 719 (888)
..+++|++++.+++|++.|+|+.+. +|||+.|. ...|+|||+|.+.+.+.++|+||.+ + +|.+
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~~~~~~~GQfv~l~~~~~~~R~ySias~p~~~~~l~~~I~~~--------~-~G~~ 161 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAGGVARPYSLASLPGEDPFLEFHIDCS--------R-PGAF 161 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCCcCCcCCCCEEEEecCCCcccccccCcCCCCCCeEEEEEEEc--------C-CCcc
Confidence 4679999999999999999998753 79998876 4689999999987778999999986 2 6999
Q ss_pred cHHHhcCCCCCEEEEEccccc-eeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 002724 720 SQYLDSLSVGSILDVKGPLGH-IQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT 798 (888)
Q Consensus 720 S~~L~~L~~Gd~V~IkGP~G~-f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt 798 (888)
|.+|+++++|++|.+.+|.|. |.+. .....++++|||||||||||++|++++++. ....+++|+|++|+
T Consensus 162 s~~l~~l~~Gd~v~l~~p~gg~~~~~---------~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~-~~~~~v~l~~g~r~ 231 (312)
T PRK05713 162 CDAARQLQVGDLLRLGELRGGALHYD---------PDWQERPLWLLAAGTGLAPLWGILREALRQ-GHQGPIRLLHLARD 231 (312)
T ss_pred chhhhcCCCCCEEEEccCCCCceEec---------CCCCCCcEEEEecCcChhHHHHHHHHHHhc-CCCCcEEEEEEcCc
Confidence 999999999999999999974 4333 111457999999999999999999999876 34578999999999
Q ss_pred CchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcC
Q 002724 799 EDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMN 878 (888)
Q Consensus 799 ~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~G 878 (888)
.+|+++++||++|++++++|++++++++ ++++ .+.+... ......+|+|||++||+ ++.+.|+++|
T Consensus 232 ~~d~~~~~el~~l~~~~~~~~~~~~~~~-----------~~~~-~l~~~~~-~~~~~~vyiCGp~~mv~-~~~~~L~~~G 297 (312)
T PRK05713 232 SAGHYLAEPLAALAGRHPQLSVELVTAA-----------QLPA-ALAELRL-VSRQTMALLCGSPASVE-RFARRLYLAG 297 (312)
T ss_pred hHHhhhHHHHHHHHHHCCCcEEEEEECc-----------chhh-hhhhccC-CCCCeEEEEeCCHHHHH-HHHHHHHHcC
Confidence 9999999999999998899999887753 2332 2333221 13457899999999998 9999999999
Q ss_pred CCCCCCEEE
Q 002724 879 YDTKDSLLV 887 (888)
Q Consensus 879 v~~~~~I~~ 887 (888)
++ .++||.
T Consensus 298 v~-~~~i~~ 305 (312)
T PRK05713 298 LP-RNQLLA 305 (312)
T ss_pred CC-HHHeee
Confidence 99 998874
No 56
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.96 E-value=1.5e-28 Score=265.14 Aligned_cols=209 Identities=21% Similarity=0.392 Sum_probs=173.0
Q ss_pred eEEEEEEEEecCceeeeeeccCC---CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHH
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ---EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYL 723 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~---pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L 723 (888)
+++|+++..++++++.|+|..+. ||||+.|. ...|+||+++.+ .+.++|+||.. |.+|.+|
T Consensus 7 ~~~v~~~~~~t~~~~~~~~~~~~~~~pGQ~v~l~~~~~~~~pySi~~~~--~~~l~~~Vk~~-----------G~~S~~L 73 (261)
T TIGR02911 7 KSEILEIIKHTDIEYTFRMSYDGPVKPGQFFEVSLPKYGEAPISVSGIG--EGYIDLTIRRV-----------GKVTDEV 73 (261)
T ss_pred eEEEEEEeeccCCEEEEEcCCCCCCCCCcEEEEEecCCCccceecCCCC--CCeEEEEEEeC-----------chhhHHH
Confidence 68999999999999999997753 89998876 346999999853 57899999973 8999999
Q ss_pred hcCCCCCEEEEEccccc-eeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchh
Q 002724 724 DSLSVGSILDVKGPLGH-IQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDI 802 (888)
Q Consensus 724 ~~L~~Gd~V~IkGP~G~-f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Di 802 (888)
..+++||+|.|+||+|+ |... ....++++||||||||||+++|++++++......+++|+|++|+.+|+
T Consensus 74 ~~l~~Gd~v~i~gP~G~~f~~~----------~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~ 143 (261)
T TIGR02911 74 FTLKEGDNLFLRGPYGNGFDVD----------NYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDI 143 (261)
T ss_pred HcCCCCCEEEEecCCCCCcccC----------ccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHh
Confidence 99999999999999998 4333 224579999999999999999999998764445789999999999999
Q ss_pred hhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCCC
Q 002724 803 LLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDTK 882 (888)
Q Consensus 803 l~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~ 882 (888)
++++||++|+++. .++++++.+ .++|.+..|+++..+.+..+.. ..+..+|+|||++|++ ++++.|++.|++ +
T Consensus 144 ~~~~eL~~l~~~~---~~~~~~~~~-~~~~~~~~g~v~~~l~~~~~~~-~~~~~v~lCGp~~mv~-~~~~~L~~~Gv~-~ 216 (261)
T TIGR02911 144 LFKEDIAEWKGNI---NLTLTLDEA-EEDYKGNIGLVTKYIPELTLKD-IEEVQAIVVGPPIMMK-FTVQELLKKGIK-E 216 (261)
T ss_pred hHHHHHHHHHhcC---cEEEEEcCC-CCCCcCCeeccCHhHHhccCCC-ccceEEEEECCHHHHH-HHHHHHHHcCCC-H
Confidence 9999999998753 345556655 6678888899997544332322 3457899999999998 899999999999 9
Q ss_pred CCEEEC
Q 002724 883 DSLLVF 888 (888)
Q Consensus 883 ~~I~~F 888 (888)
++||.+
T Consensus 217 ~~i~~~ 222 (261)
T TIGR02911 217 ENIWVS 222 (261)
T ss_pred HHEEEE
Confidence 999863
No 57
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.96 E-value=2.4e-28 Score=273.64 Aligned_cols=221 Identities=20% Similarity=0.306 Sum_probs=174.3
Q ss_pred CCCCeeeEEEEEEEEecC-----ceeeeeeccCC-----CCceEeee----------eeeeeeecccCCC----CCcEEE
Q 002724 644 VPREKIPCKLVEKILISH-----DVRLFRFALPQ-----EDQVLGLP----------LCMRAYTPTSSVD----EVGHFD 699 (888)
Q Consensus 644 ~p~~~~~~~Lv~k~~ls~-----dv~~f~f~lp~-----pGQ~l~Lp----------~~~R~YTp~S~~~----~~g~le 699 (888)
.++....++|++...++. +++.++|..+. +|||++|. ...|+|||+|.+. +.+.|+
T Consensus 86 ~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~ 165 (367)
T PLN03115 86 RPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVS 165 (367)
T ss_pred ccCCCeEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEE
Confidence 456778899999999987 89999998754 79999884 2479999999873 256899
Q ss_pred EEEEEEe-ecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHH
Q 002724 700 LVVKIYF-KGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQ 778 (888)
Q Consensus 700 L~IK~y~-~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~ 778 (888)
|+||+.. .+.....+ +|.+|+||+.|++||.|.|.||+|+|.+.. ....++++|||||||||||++||+
T Consensus 166 L~Vk~~~y~~~~g~~~-~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp---------~~~~~~iImIAgGTGIAP~rs~L~ 235 (367)
T PLN03115 166 LCVKRLVYTNDQGEIV-KGVCSNFLCDLKPGAEVKITGPVGKEMLMP---------KDPNATIIMLATGTGIAPFRSFLW 235 (367)
T ss_pred EEEEEEEeecCCCccC-CeehHhhHhhCCCcCEEEEEeecCCceeCC---------cCCCCCEEEEeCCeeHHHHHHHHH
Confidence 9999631 11111222 699999998899999999999999987651 134568999999999999999999
Q ss_pred HHHcCCCC----CceEEEEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHhh---CCC
Q 002724 779 AILKDPED----ETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREH---VPE 850 (888)
Q Consensus 779 ~ll~~~~~----~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~---l~~ 850 (888)
+++..... ..+++|||++|+.+|++|++||++|+++++ +|++++++|++ ++.|.+.+|+|++.+ .+. +.+
T Consensus 236 ~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~-~~~~~G~kgyVqd~i-~e~~e~l~~ 313 (367)
T PLN03115 236 KMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE-QTNAKGEKMYIQTRM-AEYAEELWE 313 (367)
T ss_pred HHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCC-CcccCCcceeehhHH-HHHHHHHHh
Confidence 87543221 357999999999999999999999999885 99999999987 778888889997744 322 111
Q ss_pred --CCCCcEEEEECChhhHHHHHHHHHHhc
Q 002724 851 --GSGDTLALACGPPPMIQFAVQPNLEKM 877 (888)
Q Consensus 851 --~~~~~~vyvCGPp~mi~~av~~~L~~~ 877 (888)
...++.||+|||++|++ .|.++|.++
T Consensus 314 ~l~~~~~~vYiCGp~~M~~-~V~~~l~~l 341 (367)
T PLN03115 314 LLKKDNTYVYMCGLKGMEK-GIDDIMVSL 341 (367)
T ss_pred hcccCCeEEEEeCCHHHHH-HHHHHHHHH
Confidence 13468999999999986 777776543
No 58
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.96 E-value=3e-28 Score=266.22 Aligned_cols=219 Identities=20% Similarity=0.318 Sum_probs=174.1
Q ss_pred CCCeeeEEEEEEEEec-----CceeeeeeccCC-----CCceEeee-----------eeeeeeecccCCCC----CcEEE
Q 002724 645 PREKIPCKLVEKILIS-----HDVRLFRFALPQ-----EDQVLGLP-----------LCMRAYTPTSSVDE----VGHFD 699 (888)
Q Consensus 645 p~~~~~~~Lv~k~~ls-----~dv~~f~f~lp~-----pGQ~l~Lp-----------~~~R~YTp~S~~~~----~g~le 699 (888)
+++.+.++|++++.++ ++++.|+|+.+. ||||+.|. ...|+|||+|.+.+ .+.++
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~ 84 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLS 84 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEE
Confidence 4567789999999999 699999999854 79998885 13699999998753 47999
Q ss_pred EEEEEEeec-CCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHH
Q 002724 700 LVVKIYFKG-VHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQ 778 (888)
Q Consensus 700 L~IK~y~~~-~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~ 778 (888)
|+||..... ...+....|.+|.+|..+++|+.|.|+||+|.|.+.. ....++++|||||||||||++|++
T Consensus 85 l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~---------~~~~~~~vlIagGtGIaP~~s~l~ 155 (286)
T cd06208 85 LCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLP---------EDPNATLIMIATGTGIAPFRSFLR 155 (286)
T ss_pred EEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCC---------CCCCCCEEEEecCccHHHHHHHHH
Confidence 999986310 0000001299999998899999999999999987651 123468999999999999999999
Q ss_pred HHHcCC----CCCceEEEEEecCCCchhhhHHHHHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHh------h
Q 002724 779 AILKDP----EDETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILRE------H 847 (888)
Q Consensus 779 ~ll~~~----~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~------~ 847 (888)
+++... +...+++|+|++|+.+|+++.++|++|+++++ ++++++++|++ ++.|.+..|+|++.+.+. .
T Consensus 156 ~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~-~~~~~g~~g~v~~~i~~~~~~l~~~ 234 (286)
T cd06208 156 RLFREKHADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSRE-QKNADGGKMYVQDRIAEYAEEIWNL 234 (286)
T ss_pred HHHHhhhcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCC-CCCCCCCceehhhHHHHhHHHHHHH
Confidence 987651 33568999999999999999999999999884 89999999987 667887888887744321 1
Q ss_pred CCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 848 VPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 848 l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
+. ..+..||+|||++|++ +|+..|.+
T Consensus 235 l~--~~~~~vYiCGp~~m~~-~v~~~L~~ 260 (286)
T cd06208 235 LD--KDNTHVYICGLKGMEP-GVDDALTS 260 (286)
T ss_pred Hh--cCCcEEEEeCCchHHH-HHHHHHHH
Confidence 22 2456899999999997 89888876
No 59
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.95 E-value=3e-27 Score=253.70 Aligned_cols=200 Identities=34% Similarity=0.596 Sum_probs=178.2
Q ss_pred eEEEEEEEEecCceeeeeeccCC------CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ------EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
.++|++++.+++++++|+|+++. ||||+.|. ...||||+++.+.+.|.++|.|+++. .|.+|
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~~~~~P~si~~~~~~~g~~~l~i~~~~---------~G~~T 79 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPGGVRRPYSLASAPDDKGELELHIRVYE---------VGKVT 79 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccccccCCCcEEEEEeCCCcEEEeeeccCCCcCCcEEEEEEEEe---------CChHH
Confidence 69999999999999999999865 69998887 78999999999998899999999872 69999
Q ss_pred HHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCc
Q 002724 721 QYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTED 800 (888)
Q Consensus 721 ~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~ 800 (888)
.+|..+++||.|.|+||+|++... +...+++++||||||++|++++++++.... +..+++++|++|+++
T Consensus 80 ~~i~~~k~gd~i~v~GP~G~~~~~----------~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~ 148 (252)
T COG0543 80 KYIFGLKEGDKIRVRGPLGNGFLR----------EKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAK 148 (252)
T ss_pred HHHhhccCCCEEEEEcCCCCCccc----------cccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChh
Confidence 999999999999999999998776 234556999999999999999999999876 779999999999999
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCC
Q 002724 801 DILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYD 880 (888)
Q Consensus 801 Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~ 880 (888)
|+++.+||+++..+ +++++++ ++|.+.+|+++.+.+.+++.. +...+|+|||+.|++ ++.+.+.+.|+.
T Consensus 149 dl~~~~el~~~~~~----~~~~~~~----~~~~G~~G~v~~~~~~~~~~~--~~~~v~~cGp~~M~~-~v~~~~~~~g~~ 217 (252)
T COG0543 149 DLLLLDELEELAEK----EVHPVTD----DGWKGRKGFVTTDVLKELLDL--EVDDVYICGPPAMVK-AVREKLKEYGVP 217 (252)
T ss_pred hcccHHHHHHhhcC----cEEEEEC----CCCCccCcceeHHHHhhhccc--cCCEEEEECCHHHHH-HHHHHHHhcCCc
Confidence 99999999999864 4666653 789999999987788888763 678999999999997 999999999964
No 60
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.95 E-value=1.5e-27 Score=261.05 Aligned_cols=196 Identities=24% Similarity=0.401 Sum_probs=160.2
Q ss_pred CCeeeEEEEEEEEec----CceeeeeeccCC------------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEE
Q 002724 646 REKIPCKLVEKILIS----HDVRLFRFALPQ------------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIY 705 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls----~dv~~f~f~lp~------------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y 705 (888)
..+.+++|++++.++ ++++.|+|+++. +|||+.+. ...|+|||+|.+. .+.++|+||.+
T Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~~~~R~YSias~p~-~g~l~l~Vk~~ 121 (289)
T cd06201 43 PRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGSDVPRFYSLASSSS-DGFLEICVRKH 121 (289)
T ss_pred CCccceEEEeeeecCCCCCCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCCCCCceEecCCCCC-CCeEEEEEEeC
Confidence 357889999999999 699999999875 69998886 4679999999884 58999999985
Q ss_pred eecCCCCCCCCChhcHHHhcCCCCCEEEEEc-cccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCC
Q 002724 706 FKGVHPKFPNGGLMSQYLDSLSVGSILDVKG-PLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDP 784 (888)
Q Consensus 706 ~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkG-P~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~ 784 (888)
+ +|.+|.+|+.+++|++|.+.+ |.|.|... ...++++|||||||||||++||++..
T Consensus 122 --------~-~G~~S~~L~~l~~Gd~v~v~~~~~g~F~~~-----------~~~~~lvlIAgGtGIaP~~s~l~~~~--- 178 (289)
T cd06201 122 --------P-GGLCSGYLHGLKPGDTIKAFIRPNPSFRPA-----------KGAAPVILIGAGTGIAPLAGFIRANA--- 178 (289)
T ss_pred --------C-CccchhhHhhCCCcCEEEEEeccCCCccCC-----------CCCCCEEEEecCcCHHHHHHHHHhhh---
Confidence 2 699999999999999999984 77777643 34579999999999999999999862
Q ss_pred CCCceEEEEEecCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHH------HHhhCCCCCCCcEE
Q 002724 785 EDETEMYVVYANRTED-DILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAI------LREHVPEGSGDTLA 857 (888)
Q Consensus 785 ~~~~~i~Li~~~Rt~~-Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~------L~~~l~~~~~~~~v 857 (888)
..++++|+|++|+.+ |++|++||++|+++++++++++++|++ . ..|++++.+ +.+.+. ++..|
T Consensus 179 -~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~-~-----~~g~v~~~l~~~~~~l~~~~~---~~~~v 248 (289)
T cd06201 179 -ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRT-P-----DGAYVQDRLRADAERLRRLIE---DGAQI 248 (289)
T ss_pred -ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCC-C-----CcccchhHHHHhHHHHHHHHH---CCcEE
Confidence 357899999999985 999999999999888889998888865 2 134554422 222332 35789
Q ss_pred EEECChhhHHHHHHHHHHh
Q 002724 858 LACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 858 yvCGPp~mi~~av~~~L~~ 876 (888)
|+|||++|++ ++.+.|++
T Consensus 249 yiCGp~~M~~-~v~~~L~~ 266 (289)
T cd06201 249 MVCGSRAMAQ-GVAAVLEE 266 (289)
T ss_pred EEECCHHHHH-HHHHHHHH
Confidence 9999999997 88877765
No 61
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.95 E-value=4e-27 Score=246.45 Aligned_cols=194 Identities=22% Similarity=0.358 Sum_probs=156.2
Q ss_pred cCceeeeeeccCC------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHHh-cC
Q 002724 660 SHDVRLFRFALPQ------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYLD-SL 726 (888)
Q Consensus 660 s~dv~~f~f~lp~------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~-~L 726 (888)
+.+++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.|+|+||.. |.+|.+|. .+
T Consensus 6 ~~~~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~-----------G~~t~~l~~~l 74 (216)
T cd06198 6 VRPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL-----------GDYTRRLAERL 74 (216)
T ss_pred ecceEEEEEeeCCCCCCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeC-----------ChHHHHHHHhC
Confidence 3456666766543 79998876 3579999999988778999999984 77999996 99
Q ss_pred CCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHH
Q 002724 727 SVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLRE 806 (888)
Q Consensus 727 ~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~d 806 (888)
++|+.|.|+||+|.|.+. ...++++||||||||||++++++++++. ....+++|+|++|+.+|+++++
T Consensus 75 ~~G~~v~i~gP~G~~~~~-----------~~~~~~vlia~GtGiap~~~~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~ 142 (216)
T cd06198 75 KPGTRVTVEGPYGRFTFD-----------DRRARQIWIAGGIGITPFLALLEALAAR-GDARPVTLFYCVRDPEDAVFLD 142 (216)
T ss_pred CCCCEEEEECCCCCCccc-----------ccCceEEEEccccCHHHHHHHHHHHHhc-CCCceEEEEEEECCHHHhhhHH
Confidence 999999999999998765 2268999999999999999999999876 3367999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEE
Q 002724 807 ELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLL 886 (888)
Q Consensus 807 EL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~ 886 (888)
+|++|.+++ +++++.+.+. ..+|.+..+.+ .+.... ..+..+|+|||++|++ ++++.|+++|++ +++||
T Consensus 143 ~l~~l~~~~-~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~-~~~~~vyicGp~~m~~-~v~~~l~~~Gv~-~~~I~ 211 (216)
T cd06198 143 ELRALAAAA-GVVLHVIDSP--SDGRLTLEQLV-----RALVPD-LADADVWFCGPPGMAD-ALEKGLRALGVP-ARRFH 211 (216)
T ss_pred HHHHHHHhc-CeEEEEEeCC--CCcccchhhhh-----hhcCCC-cCCCeEEEECcHHHHH-HHHHHHHHcCCC-hHhcc
Confidence 999999887 7888766543 23333222221 122222 3568999999999997 999999999999 89987
Q ss_pred E
Q 002724 887 V 887 (888)
Q Consensus 887 ~ 887 (888)
.
T Consensus 212 ~ 212 (216)
T cd06198 212 Y 212 (216)
T ss_pred h
Confidence 4
No 62
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.95 E-value=4.7e-27 Score=251.66 Aligned_cols=194 Identities=27% Similarity=0.415 Sum_probs=162.1
Q ss_pred EEEEEEEEecCceeeeeeccCC------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 651 CKLVEKILISHDVRLFRFALPQ------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
++|++++.+++|++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.. |.+|
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~~~~~~pGQf~~l~~~~~~~~~pySi~s~~~~~~~~~~~vk~~-----------G~~t 69 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKGERIPLTIADWDPEKGTITIVVQVV-----------GKST 69 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhhhccCCCCcEEEEEcCCCCCccceEeEEEcCCCCEEEEEEEeC-----------CchH
Confidence 4789999999999999999863 79998886 3569999999877778999999983 7899
Q ss_pred HHHhcCCCCCEE-EEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 002724 721 QYLDSLSVGSIL-DVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTE 799 (888)
Q Consensus 721 ~~L~~L~~Gd~V-~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~ 799 (888)
.+|..+++|+.| .|+||+|.|.+. ...++++||||||||||++++++++++. ..+++|+|++|+.
T Consensus 70 ~~l~~l~~G~~v~~i~gP~G~~~~~-----------~~~~~~lliagG~GiaP~~~~l~~~~~~---~~~v~l~~~~r~~ 135 (248)
T cd06219 70 RELATLEEGDKIHDVVGPLGKPSEI-----------ENYGTVVFVGGGVGIAPIYPIAKALKEA---GNRVITIIGARTK 135 (248)
T ss_pred HHHHhcCCCCEeeeeecCCCCCeec-----------CCCCeEEEEeCcccHHHHHHHHHHHHHc---CCeEEEEEEcCCH
Confidence 999999999999 699999998655 2357999999999999999999998765 3689999999999
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCC
Q 002724 800 DDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNY 879 (888)
Q Consensus 800 ~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv 879 (888)
+|+++.+||++|+++ +++ .+ ++.|.+..|++++ .+.+.+.+......+|+|||++|++ ++++.|+++|+
T Consensus 136 ~~~~~~~el~~l~~~-----~~~-~~---~~~~~~~~g~v~~-~l~~~~~~~~~~~~vyiCGP~~m~~-~~~~~l~~~Gv 204 (248)
T cd06219 136 DLVILEDEFRAVSDE-----LII-TT---DDGSYGEKGFVTD-PLKELIESGEKVDLVIAIGPPIMMK-AVSELTRPYGI 204 (248)
T ss_pred HHhhhHHHHHhhcCe-----EEE-Ee---CCCCCCccccchH-HHHHHHhccCCccEEEEECCHHHHH-HHHHHHHHcCC
Confidence 999999999999743 222 22 3457777888877 4566653323456899999999998 89999999999
Q ss_pred C
Q 002724 880 D 880 (888)
Q Consensus 880 ~ 880 (888)
+
T Consensus 205 ~ 205 (248)
T cd06219 205 P 205 (248)
T ss_pred C
Confidence 7
No 63
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.95 E-value=5e-27 Score=256.03 Aligned_cols=194 Identities=24% Similarity=0.374 Sum_probs=162.6
Q ss_pred EEEEEEEEecCceeeeeeccCC------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 651 CKLVEKILISHDVRLFRFALPQ------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
++|++++.++++++.|+|+.|. ||||+.|. ...|+|||++.+.+.+.++|+||.. |.+|
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~~~~~pGQfv~l~~~~~~~~rpySias~~~~~~~i~l~vk~~-----------G~~T 70 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKGERIPLTIADYDREKGTITIVFQAV-----------GKST 70 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhhccCCCCeEEEEEeCCCCCceeeEeeEEcCCCCEEEEEEEeC-----------CcHH
Confidence 5799999999999999998763 89998886 3468999999877778999999983 8999
Q ss_pred HHHhcCCCCCEE-EEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 002724 721 QYLDSLSVGSIL-DVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTE 799 (888)
Q Consensus 721 ~~L~~L~~Gd~V-~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~ 799 (888)
.+|.++++|++| .|.||+|++... ...++++|||||+||||++++++++.+. ..+++|+|++|+.
T Consensus 71 ~~L~~l~~Gd~v~~i~GP~G~~~~~-----------~~~~~~llIaGGiGiaPl~~l~~~l~~~---~~~v~l~~g~r~~ 136 (281)
T PRK06222 71 RKLAELKEGDSILDVVGPLGKPSEI-----------EKFGTVVCVGGGVGIAPVYPIAKALKEA---GNKVITIIGARNK 136 (281)
T ss_pred HHHhcCCCCCEEeeEEcCCCCCccc-----------CCCCeEEEEeCcCcHHHHHHHHHHHHHC---CCeEEEEEecCCH
Confidence 999999999999 799999997644 2347999999999999999999998765 3589999999999
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCC
Q 002724 800 DDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNY 879 (888)
Q Consensus 800 ~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv 879 (888)
+|+++.+||++++.+ ++ +.+ +++|.+..|++++ +|++.+++......||+|||++|++ ++.+.|++.|+
T Consensus 137 ~d~~~~~el~~~~~~-----~~-v~~---~d~~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~-~v~~~l~~~gv 205 (281)
T PRK06222 137 DLLILEDEMKAVSDE-----LY-VTT---DDGSYGRKGFVTD-VLKELLESGKKVDRVVAIGPVIMMK-FVAELTKPYGI 205 (281)
T ss_pred HHhhcHHHHHhhCCe-----EE-EEc---CCCCcCcccchHH-HHHHHhhcCCCCcEEEEECCHHHHH-HHHHHHHhcCC
Confidence 999999999988743 22 221 4568888999987 5666665432246899999999997 89999999998
Q ss_pred C
Q 002724 880 D 880 (888)
Q Consensus 880 ~ 880 (888)
+
T Consensus 206 ~ 206 (281)
T PRK06222 206 K 206 (281)
T ss_pred C
Confidence 6
No 64
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.95 E-value=1.5e-26 Score=247.49 Aligned_cols=192 Identities=27% Similarity=0.454 Sum_probs=160.0
Q ss_pred EEEEEEecCceeeeeeccCC------CCceEeee-------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChh
Q 002724 653 LVEKILISHDVRLFRFALPQ------EDQVLGLP-------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLM 719 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp-------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~ 719 (888)
|++++.++++++.|+|+.+. +|||+.|. ...|+||++|.+.+.+.++|+||.+ |.+
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~-----------G~~ 69 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV-----------GKG 69 (246)
T ss_pred CcceeEecCCeEEEEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEE-----------Ccc
Confidence 56789999999999999875 69998776 3579999999887678999999985 778
Q ss_pred cHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 002724 720 SQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTE 799 (888)
Q Consensus 720 S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~ 799 (888)
|.+|..+++|++|.|.||+|.+.+. ....++++||||||||||+++|++++.+. ..+++|+|++|+.
T Consensus 70 s~~l~~l~~Gd~v~i~gP~G~~~~~----------~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~~~v~l~~~~r~~ 136 (246)
T cd06218 70 TRLLSELKAGDELDVLGPLGNGFDL----------PDDDGKVLLVGGGIGIAPLLFLAKQLAER---GIKVTVLLGFRSA 136 (246)
T ss_pred hHHHhcCCCCCEEEEEecCCCCcCC----------CCCCCcEEEEecccCHHHHHHHHHHHHhc---CCceEEEEEccch
Confidence 9999999999999999999974333 12468999999999999999999999864 4789999999999
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCC
Q 002724 800 DDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNY 879 (888)
Q Consensus 800 ~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv 879 (888)
+|++++++|++|.. + ++.+ + .+.|.+..|++++ .|.+...+ ..+..||+|||++|++ +++..|++.|+
T Consensus 137 ~d~~~~~eL~~l~~---~--~~~~-~---~~~~~~~~g~v~~-~l~~~~~~-~~~~~vyiCGp~~mv~-~~~~~L~~~Gv 204 (246)
T cd06218 137 DDLFLVEEFEALGA---E--VYVA-T---DDGSAGTKGFVTD-LLKELLAE-ARPDVVYACGPEPMLK-AVAELAAERGV 204 (246)
T ss_pred hhhhhHHHHHhhCC---c--EEEE-c---CCCCCCcceehHH-HHHHHhhc-cCCCEEEEECCHHHHH-HHHHHHHhcCC
Confidence 99999999999853 2 2222 2 3446677889987 56666543 3568999999999997 99999999999
Q ss_pred C
Q 002724 880 D 880 (888)
Q Consensus 880 ~ 880 (888)
+
T Consensus 205 ~ 205 (246)
T cd06218 205 P 205 (246)
T ss_pred C
Confidence 7
No 65
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.95 E-value=1.7e-26 Score=240.49 Aligned_cols=195 Identities=23% Similarity=0.389 Sum_probs=157.7
Q ss_pred EEEEEecCceeeeeeccCC--------CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHH
Q 002724 654 VEKILISHDVRLFRFALPQ--------EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQY 722 (888)
Q Consensus 654 v~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~ 722 (888)
++++.+++++++|+|+.+. +|||+.|. ...|+|||++.+.+.+.++|+||.+. +++.+|.+
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~~~r~ySi~s~~~~~~~l~~~v~~~~--------~g~~~s~~ 72 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPNGLVRQYSLCGDPADRDRYRIAVLREP--------ASRGGSRY 72 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCcCCCCCCCceEEEEcCCCCceeeeccCCCCCCCEEEEEEEecc--------CCCchHHH
Confidence 3678999999999999864 69998887 56899999999887789999999862 23458999
Q ss_pred H-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCch
Q 002724 723 L-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDD 801 (888)
Q Consensus 723 L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~D 801 (888)
| ..+++|++|.|.||+|.|.+. ...++++||||||||||++++++++++. ..+++|+|++|+.++
T Consensus 73 l~~~~~~Gd~v~i~gP~g~f~~~-----------~~~~~~v~ia~GtGiap~~~il~~~~~~---~~~v~l~~~~r~~~~ 138 (211)
T cd06185 73 MHELLRVGDELEVSAPRNLFPLD-----------EAARRHLLIAGGIGITPILSMARALAAR---GADFELHYAGRSRED 138 (211)
T ss_pred HHhcCCCCCEEEEcCCccCCcCC-----------CCCCcEEEEeccchHhHHHHHHHHHHhC---CCCEEEEEEeCCCcc
Confidence 9 578999999999999988654 2357999999999999999999999764 468999999999999
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCC
Q 002724 802 ILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDT 881 (888)
Q Consensus 802 il~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~ 881 (888)
+++.++|+++. ..++++.+ +.. . ++.+ +.+.+.....+..+|+|||+.|++ ++++.|+++|++
T Consensus 139 ~~~~~~l~~~~--~~~~~~~~--~~~--~------~~~~---~~~~~~~~~~~~~vyicGp~~m~~-~~~~~l~~~gv~- 201 (211)
T cd06185 139 AAFLDELAALP--GDRVHLHF--DDE--G------GRLD---LAALLAAPPAGTHVYVCGPEGMMD-AVRAAAAALGWP- 201 (211)
T ss_pred hhHHHHHhhhc--CCcEEEEE--CCC--C------CccC---HHHHhccCCCCCEEEEECCHHHHH-HHHHHHHHcCCC-
Confidence 99999999987 45666654 222 1 2332 223332223357999999999998 999999999999
Q ss_pred CCCEEE
Q 002724 882 KDSLLV 887 (888)
Q Consensus 882 ~~~I~~ 887 (888)
.++||.
T Consensus 202 ~~~i~~ 207 (211)
T cd06185 202 EARLHF 207 (211)
T ss_pred hhheEe
Confidence 999984
No 66
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.94 E-value=6.9e-26 Score=241.66 Aligned_cols=195 Identities=23% Similarity=0.292 Sum_probs=158.2
Q ss_pred EEEEEEecCceeeeeeccCC------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 653 LVEKILISHDVRLFRFALPQ------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
|++++.+++++++|+|+.|. ||||+.|. ...|+|||+|.+.+.++|+|+||. .|.+|
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~-----------~G~~t 69 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEI-----------RGPKT 69 (243)
T ss_pred CceEEEecCCEEEEEEEccchhhcCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEE-----------cCchH
Confidence 46889999999999999874 79998775 468999999998778899999997 37899
Q ss_pred HHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCc
Q 002724 721 QYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTED 800 (888)
Q Consensus 721 ~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~ 800 (888)
.+|.++++|+.|.|+||+|++... ....++++|||||||||||+++++++++. ..+++|+|++|+.+
T Consensus 70 ~~l~~~~~G~~l~i~gP~G~~~~~----------~~~~~~~lliagGtGiap~~~~l~~~~~~---~~~v~l~~~~r~~~ 136 (243)
T cd06192 70 KLIAELKPGEKLDVMGPLGNGFEG----------PKKGGTVLLVAGGIGLAPLLPIAKKLAAN---GNKVTVLAGAKKAK 136 (243)
T ss_pred HHHHhCCCCCEEEEEccCCCCCcc----------CCCCCEEEEEeCcccHHHHHHHHHHHHHC---CCeEEEEEecCcHH
Confidence 999999999999999999987654 22457999999999999999999999865 47899999999999
Q ss_pred hhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCC
Q 002724 801 DILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYD 880 (888)
Q Consensus 801 Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~ 880 (888)
|+++.+||+++. .+ .+.++ +++|.+..|++... ...++. .....+|+|||++|++ ++++.|++.| +
T Consensus 137 d~~~~~el~~~~----~~--~~~~~---~~~~~~~~g~v~~~--~~~~~~-~~~~~v~icGp~~mv~-~~~~~l~~~g-~ 202 (243)
T cd06192 137 EEFLDEYFELPA----DV--EIWTT---DDGELGLEGKVTDS--DKPIPL-EDVDRIIVAGSDIMMK-AVVEALDEWL-Q 202 (243)
T ss_pred HHHHHHHHHhhc----Ce--EEEEe---cCCCCccceeechh--hhhhhc-ccCCEEEEECCHHHHH-HHHHHHHhhc-C
Confidence 999999998872 12 22233 35677778888763 122222 2346899999999998 9999999988 4
Q ss_pred CCCCEE
Q 002724 881 TKDSLL 886 (888)
Q Consensus 881 ~~~~I~ 886 (888)
..+++
T Consensus 203 -~~~~~ 207 (243)
T cd06192 203 -LIKAS 207 (243)
T ss_pred -CceEE
Confidence 44443
No 67
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.94 E-value=1.1e-25 Score=257.38 Aligned_cols=215 Identities=19% Similarity=0.336 Sum_probs=164.5
Q ss_pred CCCCeeeEEEEEEEEec-----CceeeeeeccCC------CCceEeee----------eeeeeeecccCCCCC----cEE
Q 002724 644 VPREKIPCKLVEKILIS-----HDVRLFRFALPQ------EDQVLGLP----------LCMRAYTPTSSVDEV----GHF 698 (888)
Q Consensus 644 ~p~~~~~~~Lv~k~~ls-----~dv~~f~f~lp~------pGQ~l~Lp----------~~~R~YTp~S~~~~~----g~l 698 (888)
.++..+.++|++++.++ ++++.|+|+.+. ||||+.|. ...|+|||+|.+... +.|
T Consensus 138 ~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l 217 (411)
T TIGR03224 138 GVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNL 217 (411)
T ss_pred cCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEE
Confidence 34667889999999995 499999999854 69998884 257999999986421 479
Q ss_pred EEEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHH
Q 002724 699 DLVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQ 778 (888)
Q Consensus 699 eL~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~ 778 (888)
+|+||++..+ +...+.+|.+|++|..+++||+|.|.||+|++... + ....++++|||||||||||++|++
T Consensus 218 ~l~Vk~v~~~-~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~l-------p--~~~~~~lllIagGtGIAP~~s~l~ 287 (411)
T TIGR03224 218 ALTVKRVTTD-HQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLM-------P--NHPESSIMMICTGTGSAPMRAMTE 287 (411)
T ss_pred EEEEEEEEec-CCCCcCcccchhHHhcCCCcCEEEEEeccCCcccC-------C--CCCCCCEEEEecccCcHHHHHHHH
Confidence 9999997421 22233369999999889999999999999986544 1 123579999999999999999999
Q ss_pred HHHcC--CCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhh-------CC
Q 002724 779 AILKD--PEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREH-------VP 849 (888)
Q Consensus 779 ~ll~~--~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~-------l~ 849 (888)
+++.. .....+++|||++|+.+|++|.+||++|.+.+ +++++++++. .++ .+|+|++. |.+. +.
T Consensus 288 ~~~~~~~~~~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~--~~~~~~~sr~-~~~---~~g~V~d~-l~~~~~~v~~ll~ 360 (411)
T TIGR03224 288 RRRRRRDHGEGGKLMLFFGARTKEELPYFGPLQKLPKDF--IDINFAFSRT-PEQ---PKRYVQDA-IRERAADVAALLK 360 (411)
T ss_pred HHHHHhhcCCCCCEEEEEecCccccchHHHHHHHHHhcC--ceEEEEeccC-Ccc---CcccHhhH-HHHhHHHHHHHHh
Confidence 98753 23467999999999999999999999998765 4455677764 222 35777763 3322 22
Q ss_pred CCCCCcEEEEECChhhHHHHHHHHHHhcC
Q 002724 850 EGSGDTLALACGPPPMIQFAVQPNLEKMN 878 (888)
Q Consensus 850 ~~~~~~~vyvCGPp~mi~~av~~~L~~~G 878 (888)
..+..||+|||++|++ ++...|.+.+
T Consensus 361 --~~~~~vYiCGp~~M~~-~v~~~L~~~~ 386 (411)
T TIGR03224 361 --DPNTYIYICGLKGMEE-GVLDAFRDVC 386 (411)
T ss_pred --cCCcEEEEECCHHHHH-HHHHHHHHHH
Confidence 2357899999999986 7777776654
No 68
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.94 E-value=1.2e-25 Score=238.60 Aligned_cols=190 Identities=22% Similarity=0.314 Sum_probs=156.1
Q ss_pred EEEEEEEEecCceeeeeeccCC---CCceEeee---eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHHh
Q 002724 651 CKLVEKILISHDVRLFRFALPQ---EDQVLGLP---LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYLD 724 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~---pGQ~l~Lp---~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~ 724 (888)
++|++++.+|+|++.|+|+.+. ||||+.|. ...|+||++|.+ +.++|+||.. |.+|.+|.
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~~pGQ~v~l~~~~~~~~~~Si~s~~---~~l~~~v~~~-----------G~~s~~L~ 66 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWDFDFKPGQFVMVWVPGVDEIPMSLSYID---GPNSITVKKV-----------GEATSALH 66 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecCCCCCCCceEEEEeCCCCcceeEEecCC---CeEEEEEEec-----------ChHHHHHH
Confidence 3789999999999999999864 79998876 346999999987 7899999983 88999998
Q ss_pred cCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhh
Q 002724 725 SLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILL 804 (888)
Q Consensus 725 ~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~ 804 (888)
++++||.|.|+||+|..... . .++++||||||||||++++++++++. ++++|+|++|+.+|+++
T Consensus 67 ~l~~Gd~v~i~gP~G~~f~~-----------~-~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~ 130 (233)
T cd06220 67 DLKEGDKLGIRGPYGNGFEL-----------V-GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLF 130 (233)
T ss_pred hcCCCCEEEEECcCCCCccC-----------C-CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChh
Confidence 89999999999999983222 1 57999999999999999999998764 78999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCCCCCC
Q 002724 805 REELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYDTKDS 884 (888)
Q Consensus 805 ~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~ 884 (888)
++||+++ .+ ++++. .+.|.+..|++++ ++.+... .....||+|||++|++ ++++.|+++|++ .+
T Consensus 131 ~~eL~~~----~~--~~~~~----~~~~~~~~g~~~~-~l~~~~~--~~~~~vyicGp~~m~~-~~~~~L~~~g~~--~~ 194 (233)
T cd06220 131 LDRLRKS----DE--LIVTT----DDGSYGFKGFVTD-LLKELDL--EEYDAIYVCGPEIMMY-KVLEILDERGVR--AQ 194 (233)
T ss_pred HHHHhhC----Cc--EEEEE----eCCCCcccceehH-HHhhhcc--cCCCEEEEECCHHHHH-HHHHHHHhcCCc--EE
Confidence 9999872 22 22222 2357777899987 4555542 3346899999999997 999999999994 55
Q ss_pred EE
Q 002724 885 LL 886 (888)
Q Consensus 885 I~ 886 (888)
|+
T Consensus 195 i~ 196 (233)
T cd06220 195 FS 196 (233)
T ss_pred EE
Confidence 54
No 69
>PRK05802 hypothetical protein; Provisional
Probab=99.94 E-value=2.6e-25 Score=246.36 Aligned_cols=207 Identities=14% Similarity=0.214 Sum_probs=159.7
Q ss_pred eecCCCCeeeEEEEEEEEecCceeeeeeccC--------CCCceEeee------eeeeeeecccCCCCCcEEEEEEEEEe
Q 002724 641 VALVPREKIPCKLVEKILISHDVRLFRFALP--------QEDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYF 706 (888)
Q Consensus 641 v~l~p~~~~~~~Lv~k~~ls~dv~~f~f~lp--------~pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~ 706 (888)
.+..+++.++++|++++.++++++.|+|+.| .||||+.|. ...|||||++.+.+.+.|+|+||+
T Consensus 57 ~~~~~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~-- 134 (320)
T PRK05802 57 KAKEGRKTYECKIIKKENIEDNLIILTLKVPHKLARDLVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEI-- 134 (320)
T ss_pred hhcCccccEeEEEEEEEEecCCEEEEEEECCchhhhccCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEe--
Confidence 3556677889999999999999999999875 389998886 346999999998888999999998
Q ss_pred ecCCCCCCCCChhcHHHhcCCCCCEEEEEccccc--eeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCC
Q 002724 707 KGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGH--IQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDP 784 (888)
Q Consensus 707 ~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~--f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~ 784 (888)
.|.+|++|..+++|++|.|+||+|+ |.+. +.+....++++|||||+||||+++++++++++.
T Consensus 135 ---------~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~-------~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~ 198 (320)
T PRK05802 135 ---------RGVKTKKIAKLNKGDEILLRGPYWNGILGLK-------NIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG 198 (320)
T ss_pred ---------cChhHHHHhcCCCCCEEEEeCCCCcCcCCcc-------cccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC
Confidence 4999999999999999999999965 3221 001223568999999999999999999998762
Q ss_pred CCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChh
Q 002724 785 EDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPP 864 (888)
Q Consensus 785 ~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~ 864 (888)
.+++|+|++|+.+|++++++|+++..+. .+..+++.. ..++. .+|.+++ .+.+ .+...||+|||+.
T Consensus 199 ---~~v~li~g~r~~~~~~~~~el~~~~~~~---~~~~~~ddG-~~~~~-~~g~v~~-----~l~~-~~~~~vy~CGP~~ 264 (320)
T PRK05802 199 ---NKIIVIIDKGPFKNNFIKEYLELYNIEI---IELNLLDDG-ELSEE-GKDILKE-----IIKK-EDINLIHCGGSDI 264 (320)
T ss_pred ---CcEEEEEeCCCHHHHHHHHHHHHhhCce---EEEEecccC-CCCcc-ccchHHH-----HhcC-CCCCEEEEECCHH
Confidence 4899999999999999999999987542 222222211 11221 2444444 3332 2346899999999
Q ss_pred hHHHHHHHHHHh--cCCC
Q 002724 865 MIQFAVQPNLEK--MNYD 880 (888)
Q Consensus 865 mi~~av~~~L~~--~Gv~ 880 (888)
|++ ++.+.|.+ .|++
T Consensus 265 M~k-~v~~~l~~~~~~i~ 281 (320)
T PRK05802 265 LHY-KIIEYLDKLNEKIK 281 (320)
T ss_pred HHH-HHHHHHhhhcCCce
Confidence 997 89999988 5654
No 70
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.94 E-value=1.7e-25 Score=242.14 Aligned_cols=198 Identities=21% Similarity=0.314 Sum_probs=155.1
Q ss_pred CceeeeeeccC--C-----CCceEeee----eeeeeeecccCCCC-CcEEEEEEEEEee-cCCCCCCCCChhcHHHhcCC
Q 002724 661 HDVRLFRFALP--Q-----EDQVLGLP----LCMRAYTPTSSVDE-VGHFDLVVKIYFK-GVHPKFPNGGLMSQYLDSLS 727 (888)
Q Consensus 661 ~dv~~f~f~lp--~-----pGQ~l~Lp----~~~R~YTp~S~~~~-~g~leL~IK~y~~-~~~~~~P~gG~~S~~L~~L~ 727 (888)
++++.|+|+.+ . ||||+.|. ...|+|||+|.+.+ .+.++|+||.... ..++.. ..|.+|.+|..|+
T Consensus 15 ~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~-~~G~~S~~L~~lk 93 (267)
T cd06182 15 RSTRHLEFDLSGNSVLKYQPGDHLGVIPPNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRI-RKGVCSNFLAGLQ 93 (267)
T ss_pred CceEEEEEecCCCCcCccCCCCEEEEecCCCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCe-eccchhHHHhhCC
Confidence 35777777776 2 79998886 46899999998864 6899999998521 111222 2499999999999
Q ss_pred CCCEEEEEcccc-ceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcC---CCCCceEEEEEecCCC-chh
Q 002724 728 VGSILDVKGPLG-HIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKD---PEDETEMYVVYANRTE-DDI 802 (888)
Q Consensus 728 ~Gd~V~IkGP~G-~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~---~~~~~~i~Li~~~Rt~-~Di 802 (888)
+|+.|.|.||.| .|.+. ....++++|||||||||||++|+++++.. .....+++|+|++|+. +|+
T Consensus 94 ~Gd~v~v~~p~G~~f~l~----------~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~ 163 (267)
T cd06182 94 LGAKVTVFIRPAPSFRLP----------KDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDY 163 (267)
T ss_pred CCCEEEEEEecCCcccCC----------CCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccc
Confidence 999999999999 78765 23467999999999999999999999862 2346789999999999 999
Q ss_pred hhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHH------HhhCCCCCCCcEEEEECChh-hHHHHHHHHHH
Q 002724 803 LLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAIL------REHVPEGSGDTLALACGPPP-MIQFAVQPNLE 875 (888)
Q Consensus 803 l~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L------~~~l~~~~~~~~vyvCGPp~-mi~~av~~~L~ 875 (888)
+++++|++|++++.++++++++|++ +.. ..|++++.+. .+.+. ++..||+|||++ |++ ++.+.|.
T Consensus 164 ~~~del~~~~~~~~~~~~~~~~S~~-~~~---~~~~v~~~l~~~~~~l~~~l~---~~~~vyvCGp~~~m~~-~v~~~L~ 235 (267)
T cd06182 164 LYREELQEALKDGALTRLDVAFSRE-QAE---PKVYVQDKLKEHAEELRRLLN---EGAHIYVCGDAKSMAK-DVEDALV 235 (267)
T ss_pred cHHHHHHHHHhCCCcceEEEEEccC-CCC---CceehHHHHHHhHHHHHHHHh---cCCEEEEECCcccchH-HHHHHHH
Confidence 9999999999877899999999875 222 2355554221 22232 345899999999 997 8889888
Q ss_pred hc
Q 002724 876 KM 877 (888)
Q Consensus 876 ~~ 877 (888)
++
T Consensus 236 ~~ 237 (267)
T cd06182 236 KI 237 (267)
T ss_pred HH
Confidence 76
No 71
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.94 E-value=3.1e-25 Score=237.84 Aligned_cols=192 Identities=23% Similarity=0.390 Sum_probs=159.2
Q ss_pred CeeeEEEEEEEEecCceeeeeeccCC-----CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCC
Q 002724 647 EKIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPN 715 (888)
Q Consensus 647 ~~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~ 715 (888)
++..++|++++.+++|++.|+|..+. +|||+.|. ...|+||+++.+ .+.++|+||..
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~~---------- 70 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRKV---------- 70 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCccccCCCCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEEc----------
Confidence 46789999999999999999999653 79998876 268999999987 57999999973
Q ss_pred CChhcHHHhcCCCCCEEEEEccccc-eeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEE
Q 002724 716 GGLMSQYLDSLSVGSILDVKGPLGH-IQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVY 794 (888)
Q Consensus 716 gG~~S~~L~~L~~Gd~V~IkGP~G~-f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~ 794 (888)
|.+|.+|..+++|+.|.|.||+|. |... ...++++||||||||||++++++++++. ..+++|+|
T Consensus 71 -G~~t~~l~~l~~G~~v~i~gP~G~~f~l~-----------~~~~~~vlIagG~GiaP~~s~l~~~~~~---~~~v~l~~ 135 (250)
T PRK00054 71 -GEGTKKLSKLKEGDELDIRGPLGNGFDLE-----------EIGGKVLLVGGGIGVAPLYELAKELKKK---GVEVTTVL 135 (250)
T ss_pred -ChHHHHHhcCCCCCEEEEEcccCCCCCCC-----------CCCCeEEEEeccccHHHHHHHHHHHHHc---CCcEEEEE
Confidence 889999999999999999999998 4432 2557999999999999999999999865 35799999
Q ss_pred ecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHH
Q 002724 795 ANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNL 874 (888)
Q Consensus 795 ~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L 874 (888)
++|+.+|++++++|+++. + +++. + +++|.+..|++++. +.+.. .....||+|||++|++ ++++.|
T Consensus 136 ~~r~~~d~~~~~el~~~~----~--~~~~-~---~~~~~~~~g~v~~~-l~~~~---~~~~~vyvCGp~~m~~-~v~~~l 200 (250)
T PRK00054 136 GARTKDEVIFEEEFAKVG----D--VYVT-T---DDGSYGFKGFVTDV-LDELD---SEYDAIYSCGPEIMMK-KVVEIL 200 (250)
T ss_pred EcCCHHHhhhHHHHHhcC----C--EEEE-e---cCCCCCcccchhHh-Hhhhc---cCCCEEEEeCCHHHHH-HHHHHH
Confidence 999999999999999843 2 2222 1 35577778898874 44443 2345899999999997 999999
Q ss_pred HhcCCC
Q 002724 875 EKMNYD 880 (888)
Q Consensus 875 ~~~Gv~ 880 (888)
++.|++
T Consensus 201 ~~~Gv~ 206 (250)
T PRK00054 201 KEKKVP 206 (250)
T ss_pred HHcCCc
Confidence 999985
No 72
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.93 E-value=9.7e-26 Score=234.18 Aligned_cols=227 Identities=21% Similarity=0.434 Sum_probs=197.1
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC-------CCceEeee-----------------------------------eee
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ-------EDQVLGLP-----------------------------------LCM 683 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~-------pGQ~l~Lp-----------------------------------~~~ 683 (888)
++| .|+|++......-++.+.++.|. +|-|+.+. .+.
T Consensus 133 kkW-ectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~ 211 (410)
T COG2871 133 KKW-ECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPII 211 (410)
T ss_pred cce-eEEEEeCCchhhhhhhheeeCCCCCccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHH
Confidence 444 89999999988889999999886 46666653 456
Q ss_pred eeeecccCCCCCcEEEEEEEEEeec-CCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEE
Q 002724 684 RAYTPTSSVDEVGHFDLVVKIYFKG-VHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLA 762 (888)
Q Consensus 684 R~YTp~S~~~~~g~leL~IK~y~~~-~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~iv 762 (888)
|+||.+|-|.+.+.|.|-||+..|. .+++.| -|.||.|+-+|++||.|.|+||+|.|... +....++
T Consensus 212 rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~P-pG~mSSyi~sLKpGDKvtisGPfGEfFaK-----------dtdaemv 279 (410)
T COG2871 212 RAYSMASYPEEKGIIKLNVRIATPPPRNPDAP-PGQMSSYIWSLKPGDKVTISGPFGEFFAK-----------DTDAEMV 279 (410)
T ss_pred HHhhhhcChhhcCeEEEEEEeccCCCCCCCCC-ccceeeeEEeecCCCeEEEeccchhhhhc-----------cCCCceE
Confidence 9999999999999999999997552 233455 59999999999999999999999998866 6778999
Q ss_pred EEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccc-cCCccccccccCH
Q 002724 763 MLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSI-KEGWQYSTGFITE 841 (888)
Q Consensus 763 mIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~-~~~w~~~~Grv~~ 841 (888)
||+||.|.+||++-|-..|++....+++.+.|++|+..+.+|.+++++|+++++||+.|.++|+|. .++|.+.+|++..
T Consensus 280 FigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae~pNF~wH~aLSdplpEDnW~g~TgFihn 359 (410)
T COG2871 280 FIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAENPNFHWHLALSDPLPEDNWDGYTGFIHN 359 (410)
T ss_pred EEecCcCcCchHHHHHHHHHhhcccceeeeeeccchHHHhHHHHHHHHHHhhCCCcEEEEEecCCCCcCCcccchhHHHH
Confidence 999999999999999888888788999999999999999999999999999999999999999874 4689999999988
Q ss_pred HHHHhhCCC--CCCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEEE
Q 002724 842 AILREHVPE--GSGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 842 ~~L~~~l~~--~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~~ 887 (888)
.+...++.. ..+++.+|+||||-|.. +|.+.|+.+|+. .++|..
T Consensus 360 v~~en~Lk~h~aPEDceyYmCGPp~mNa-svikmL~dlGVE-~enIlL 405 (410)
T COG2871 360 VLYENYLKDHEAPEDCEYYMCGPPLMNA-SVIKMLKDLGVE-RENILL 405 (410)
T ss_pred HHHhhhhhcCCCchheeEEeeCcchhhH-HHHHHHHhcCcc-ccceee
Confidence 766666643 25789999999999976 999999999998 998863
No 73
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.93 E-value=6.4e-25 Score=236.36 Aligned_cols=202 Identities=22% Similarity=0.353 Sum_probs=173.3
Q ss_pred CCeeeEEEEEEEEecCceeeeeeccCC-----CCceEeee-------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCC
Q 002724 646 REKIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP-------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKF 713 (888)
Q Consensus 646 ~~~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp-------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~ 713 (888)
...+.++|+..+..+.|+..++..+.. +|||..|. ...+||||+++.... +++|.||.
T Consensus 213 s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~s-el~FsIK~--------- 282 (438)
T COG4097 213 SFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGS-ELRFSIKA--------- 282 (438)
T ss_pred ccccceEEechhhcCcchheeecccCCcccccCCceEEEEeccccccCCCCCeeeeeCCCCc-eEEEEehh---------
Confidence 346788999999999999999888765 69986665 447899999998765 89999998
Q ss_pred CCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEE
Q 002724 714 PNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYV 792 (888)
Q Consensus 714 P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~L 792 (888)
-|.+|+.| ++|++|+.+++.||+|+|.+. +.-...|+||||+|||||+++++.+... ++...+.|
T Consensus 283 --LGD~Tk~l~dnLk~G~k~~vdGPYG~F~~~-----------~g~~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L 348 (438)
T COG4097 283 --LGDFTKTLKDNLKVGTKLEVDGPYGKFDFE-----------RGLNTQVWIAGGIGITPFISMLFTLAER-KSDPPVHL 348 (438)
T ss_pred --hhhhhHHHHHhccCCceEEEecCcceeecc-----------cCCcccEEEecCcCcchHHHHHHhhccc-ccCCceEE
Confidence 49999999 889999999999999999987 2233499999999999999999999874 67899999
Q ss_pred EEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHH
Q 002724 793 VYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQP 872 (888)
Q Consensus 793 i~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~ 872 (888)
+|+.|+.++.+|.+||+.++++.+++.+|..-|. ..|+++.+.++++ ++......||+|||++|++ +++.
T Consensus 349 ~Y~~~n~e~~~y~~eLr~~~qkl~~~~lHiiDSs--------~~g~l~~e~ler~-~~~~~~~sv~fCGP~~m~d-sL~r 418 (438)
T COG4097 349 FYCSRNWEEALYAEELRALAQKLPNVVLHIIDSS--------KDGYLDQEDLERY-PDRPRTRSVFFCGPIKMMD-SLRR 418 (438)
T ss_pred EEEecCCchhHHHHHHHHHHhcCCCeEEEEecCC--------CCCccCHHHhhcc-ccccCcceEEEEcCHHHHH-HHHH
Confidence 9999999999999999999998899998885443 3689999888887 3334445899999999997 9999
Q ss_pred HHHhcCCCC
Q 002724 873 NLEKMNYDT 881 (888)
Q Consensus 873 ~L~~~Gv~~ 881 (888)
.|++.++++
T Consensus 419 ~l~~~~~~i 427 (438)
T COG4097 419 DLKKQNVPI 427 (438)
T ss_pred HHHHcCCCH
Confidence 999999984
No 74
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.92 E-value=2.3e-24 Score=230.54 Aligned_cols=200 Identities=18% Similarity=0.334 Sum_probs=149.5
Q ss_pred EEEEEEEecC-----ceeeeeeccCC------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCC
Q 002724 652 KLVEKILISH-----DVRLFRFALPQ------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNG 716 (888)
Q Consensus 652 ~Lv~k~~ls~-----dv~~f~f~lp~------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~g 716 (888)
+|.++..+++ +++.|+|+.+. ||||+.|. ...|+|||+|.+. .+.++|+||.+.. ++.+ .
T Consensus 2 ~~~~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~~~~~R~YSIas~p~-~~~l~l~Vk~~~~---~~~~-~ 76 (245)
T cd06200 2 RLQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRHPLPHREYSIASLPA-DGALELLVRQVRH---ADGG-L 76 (245)
T ss_pred eeEeeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCCCCCCcceEeccCCC-CCEEEEEEEEecc---CCCC-C
Confidence 3444554444 37888888872 79998886 3579999999985 4789999998621 0111 2
Q ss_pred ChhcHHHh-cCCCCCEEEEEcccc-ceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEE
Q 002724 717 GLMSQYLD-SLSVGSILDVKGPLG-HIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVY 794 (888)
Q Consensus 717 G~~S~~L~-~L~~Gd~V~IkGP~G-~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~ 794 (888)
|.+|.+|. .+++|+.|.|.||.| .|.+. ...++++|||||||||||++|+++++... ..+++|+|
T Consensus 77 G~~S~~L~~~~~~Gd~v~i~gp~gg~F~~~-----------~~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~ 143 (245)
T cd06200 77 GLGSGWLTRHAPIGASVALRLRENPGFHLP-----------DDGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLF 143 (245)
T ss_pred eeechhhhhCCCCCCEEEEEecCCCcccCC-----------CCCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEE
Confidence 78999995 569999999999865 55443 24579999999999999999999997652 35789999
Q ss_pred ecCCC-chhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCC----CCCCcEEEEECCh-hhHHH
Q 002724 795 ANRTE-DDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPE----GSGDTLALACGPP-PMIQF 868 (888)
Q Consensus 795 ~~Rt~-~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~----~~~~~~vyvCGPp-~mi~~ 868 (888)
++|+. .|++|.+||++|+++++++++++++|+. +. ..|++++.+ .+.... ...+..||+|||+ +|++
T Consensus 144 g~r~~~~d~~~~~el~~~~~~~~~~~~~~~~s~~-~~----~~~~v~~~l-~~~~~~~~~~~~~~~~vy~CGp~~~m~~- 216 (245)
T cd06200 144 GERQAAHDFFCREELEAWQAAGHLARLDLAFSRD-QA----QKRYVQDRL-RAAADELRAWVAEGAAIYVCGSLQGMAP- 216 (245)
T ss_pred ecCCccccHhHHHHHHHHHHCCCcceEEEEEccC-CC----CCcchHHHH-HHhHHHHHHHHHCCcEEEEECCchhhhH-
Confidence 99998 4999999999999888888888888864 21 245665432 222110 0135789999999 9997
Q ss_pred HHHHHHHh
Q 002724 869 AVQPNLEK 876 (888)
Q Consensus 869 av~~~L~~ 876 (888)
++++.|.+
T Consensus 217 ~v~~~l~~ 224 (245)
T cd06200 217 GVDAVLDE 224 (245)
T ss_pred HHHHHHHH
Confidence 88887754
No 75
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.92 E-value=3e-24 Score=226.11 Aligned_cols=176 Identities=24% Similarity=0.383 Sum_probs=138.6
Q ss_pred EEEEecCceeeeeeccCC--------CCceEeee--e--------------------eeeeeecccCCCCC---cEEEEE
Q 002724 655 EKILISHDVRLFRFALPQ--------EDQVLGLP--L--------------------CMRAYTPTSSVDEV---GHFDLV 701 (888)
Q Consensus 655 ~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp--~--------------------~~R~YTp~S~~~~~---g~leL~ 701 (888)
+++.+++|++.|+|+++. ||||+.|. . ..|+|||+|.+.+. +.|+|+
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~ 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred cceecccceeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEE
Confidence 578899999999999965 59998775 1 35999999998653 799999
Q ss_pred EEEEeecCCCCCCCCChhcHHHhcCC--C---CCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHH
Q 002724 702 VKIYFKGVHPKFPNGGLMSQYLDSLS--V---GSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQI 776 (888)
Q Consensus 702 IK~y~~~~~~~~P~gG~~S~~L~~L~--~---Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~l 776 (888)
||.. |.+|++|.++. . |+.|.|.||+|.|.+.... ....++++||||||||||+++|
T Consensus 82 vk~~-----------G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~-------~~~~~~illIagG~GItP~~si 143 (220)
T cd06197 82 VRKK-----------GPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPG-------EGAERKMVWIAGGVGITPFLAM 143 (220)
T ss_pred EEeC-----------CCCCHHHHHhhhcccCCCceEEEEecCCcccCCccc-------ccCCceEEEEecccchhhHHHH
Confidence 9983 89999995543 3 9999999999998765100 1245789999999999999999
Q ss_pred HHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcE
Q 002724 777 MQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTL 856 (888)
Q Consensus 777 l~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~ 856 (888)
++++++......+++|+|++|+.+|+++.+||.++.. +.+....-. .+ .
T Consensus 144 l~~l~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~----~~~~~~~~~---------~~------------------~ 192 (220)
T cd06197 144 LRAILSSRNTTWDITLLWSLREDDLPLVMDTLVRFPG----LPVSTTLFI---------TS------------------E 192 (220)
T ss_pred HHHHHhcccCCCcEEEEEEecchhhHHHHHHHHhccC----CceEEEEEE---------ec------------------c
Confidence 9999875444679999999999999999999977652 212111100 00 6
Q ss_pred EEEECChhhHHHHHHHHHHhcCCC
Q 002724 857 ALACGPPPMIQFAVQPNLEKMNYD 880 (888)
Q Consensus 857 vyvCGPp~mi~~av~~~L~~~Gv~ 880 (888)
||+|||++|++ ++.+.|+++.+-
T Consensus 193 v~~CGP~~m~~-~~~~~~~~~~~~ 215 (220)
T cd06197 193 VYLCGPPALEK-AVLEWLEGKKVH 215 (220)
T ss_pred EEEECcHHHHH-HHHHHhhhceeE
Confidence 99999999998 899999877554
No 76
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.91 E-value=9.9e-24 Score=258.92 Aligned_cols=194 Identities=24% Similarity=0.335 Sum_probs=164.2
Q ss_pred EEEEEEEEecCceeeeeeccCC------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 651 CKLVEKILISHDVRLFRFALPQ------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
++|++++.++++++.|+|+.|. ||||+.|. ...|||||++.+.+.+.|+|+||.. |.+|
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~~~~~pGQFv~l~~~~~~~~rp~Si~~~~~~~g~i~~~vk~v-----------G~~T 70 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIAKSRKPGQFVIVRVGEKGERIPLTIADADPEKGTITLVIQEV-----------GLST 70 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchhccCCCCeeEEEEeCCCCCeeEEEeeeeCCCCCEEEEEEEEc-----------CchH
Confidence 5799999999999999998763 89998886 3468999999988889999999984 8999
Q ss_pred HHHhcCCCCCEE-EEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCC
Q 002724 721 QYLDSLSVGSIL-DVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTE 799 (888)
Q Consensus 721 ~~L~~L~~Gd~V-~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~ 799 (888)
.+|.++++||.| .|.||+|++... ...++++|||||+|||||+++++++++. ..+++|+|++|+.
T Consensus 71 ~~L~~l~~Gd~v~~v~GP~G~~~~~-----------~~~~~~llvaGG~GiaPl~~l~~~l~~~---~~~v~l~~g~r~~ 136 (752)
T PRK12778 71 TKLCELNEGDYITDVVGPLGNPSEI-----------ENYGTVVCAGGGVGVAPMLPIVKALKAA---GNRVITILGGRSK 136 (752)
T ss_pred HHHhcCCCCCEeCeEeCCCCCCccC-----------CCCCeEEEEECCEeHHHHHHHHHHHHHC---CCeEEEEeccCCH
Confidence 999999999999 899999998755 1247999999999999999999999876 3589999999999
Q ss_pred chhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCC
Q 002724 800 DDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNY 879 (888)
Q Consensus 800 ~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv 879 (888)
+|+++.+||++++.+ +.++ + +++|.+..|++++ .|++.+........||+|||++|++ ++.+.|++.|+
T Consensus 137 ~~l~~~~el~~~~~~-----~~~~-t---~dg~~g~~G~v~~-~l~~~~~~~~~~~~vy~CGP~~M~~-~v~~~l~~~gv 205 (752)
T PRK12778 137 ELIILEDEMRESSDE-----VIIM-T---DDGSYGRKGLVTD-GLEEVIKRETKVDKVFAIGPAIMMK-FVCLLTKKYGI 205 (752)
T ss_pred HHhhhHHHHHhhcCe-----EEEE-E---CCCCCCCcccHHH-HHHHHhhcCCCCCEEEEECCHHHHH-HHHHHHHHcCC
Confidence 999999999988643 2222 2 4678888999987 5666664322346899999999997 89999999998
Q ss_pred C
Q 002724 880 D 880 (888)
Q Consensus 880 ~ 880 (888)
+
T Consensus 206 ~ 206 (752)
T PRK12778 206 P 206 (752)
T ss_pred C
Confidence 7
No 77
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.91 E-value=6.9e-24 Score=225.41 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=152.1
Q ss_pred EEEEEEecCceeeeeeccCC--------CCceEeee----e---------------------eeeeeecccCCCCCcEEE
Q 002724 653 LVEKILISHDVRLFRFALPQ--------EDQVLGLP----L---------------------CMRAYTPTSSVDEVGHFD 699 (888)
Q Consensus 653 Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp----~---------------------~~R~YTp~S~~~~~g~le 699 (888)
|++++.+++++++|+|+.+. ||||+.|. . ..|+|||++.+.+.++++
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEE
Confidence 57899999999999998854 69998775 1 359999999887788999
Q ss_pred EEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHH
Q 002724 700 LVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQA 779 (888)
Q Consensus 700 L~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ 779 (888)
|.||.+ +++|.+|+||.++++||+|.|.||+|.|.+. ...++++||||||||||+++|+++
T Consensus 81 ~~v~~~--------~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~-----------~~~~~~vlia~GtGi~p~~~il~~ 141 (235)
T cd06193 81 IDFVLH--------GDEGPASRWAASAQPGDTLGIAGPGGSFLPP-----------PDADWYLLAGDETALPAIAAILEE 141 (235)
T ss_pred EEEEeC--------CCCCchHHHHhhCCCCCEEEEECCCCCCCCC-----------CCcceEEEEeccchHHHHHHHHHh
Confidence 999985 2138999999999999999999999998765 245799999999999999999998
Q ss_pred HHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEE
Q 002724 780 ILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALA 859 (888)
Q Consensus 780 ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyv 859 (888)
+... .++++++++|+.+|++..+++ ++++++++.+.+ .. .+..+.+ ++. .+.....+..+|+
T Consensus 142 ~~~~----~~~~~~~~~~~~~d~~~l~~~-------~~~~~~~~~~~~-~~--~~~~~~~---~~~-~~~~~~~~~~vyi 203 (235)
T cd06193 142 LPAD----ARGTALIEVPDAADEQPLPAP-------AGVEVTWLHRGG-AE--AGELALL---AVR-ALAPPAGDGYVWI 203 (235)
T ss_pred CCCC----CeEEEEEEECCHHHccccCCC-------CCcEEEEEeCCC-CC--cchhHHH---HHh-cccCCCCCeEEEE
Confidence 7532 689999999999776543332 367777766543 21 1111211 222 2222245679999
Q ss_pred ECChhhHHHHHHHHHHh-cCCCCCCCEEE
Q 002724 860 CGPPPMIQFAVQPNLEK-MNYDTKDSLLV 887 (888)
Q Consensus 860 CGPp~mi~~av~~~L~~-~Gv~~~~~I~~ 887 (888)
|||++|++ ++++.|++ .|++ +++||.
T Consensus 204 cGp~~mv~-~v~~~l~~~~g~~-~~~i~~ 230 (235)
T cd06193 204 AGEAGAVR-ALRRHLREERGVP-RAQVYA 230 (235)
T ss_pred EccHHHHH-HHHHHHHHccCCC-HHHEEE
Confidence 99999998 89999976 6999 999985
No 78
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.90 E-value=8.2e-23 Score=253.76 Aligned_cols=206 Identities=23% Similarity=0.375 Sum_probs=166.7
Q ss_pred CeeeEEEEEEEEecCceeeeeeccCC------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCC
Q 002724 647 EKIPCKLVEKILISHDVRLFRFALPQ------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNG 716 (888)
Q Consensus 647 ~~~~~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~g 716 (888)
.+..++|++++.++++++.|+|+.|. ||||+.|. ...|||||++.+.+.+.|+|+||.+
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~~~~~PGQFv~L~~~~~ge~rP~SIas~~~~~g~i~l~Vk~v----------- 715 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKGELIPLTLADWDAEKGTIDLVVQGM----------- 715 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCccccCCCCceEEEEeCCCCCEEeEEccCCCCCCCEEEEEEEee-----------
Confidence 57889999999999999999998763 89998886 3469999999887788999999984
Q ss_pred ChhcHHHhcCCCCCEEE-EEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEe
Q 002724 717 GLMSQYLDSLSVGSILD-VKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYA 795 (888)
Q Consensus 717 G~~S~~L~~L~~Gd~V~-IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~ 795 (888)
|.+|.+|+.+++|+.|. |.||+|++... . .....++++|||||+||||+++|++++++. ..+++|+|+
T Consensus 716 G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~-------~-~~~~~~~vllIAGGiGIAPl~sl~r~l~~~---g~~V~li~G 784 (944)
T PRK12779 716 GTSSLEINRMAIGDAFSGIAGPLGRASEL-------H-RYEGNQTVVFCAGGVGLPPVYPIMRAHLRL---GNHVTLISG 784 (944)
T ss_pred ccHHHHHhcCCCcCEEeeeecCCCCCcCC-------c-cccCCCcEEEEEccEeHHHHHHHHHHHHHC---CCCEEEEEE
Confidence 78899999999999994 99999997643 0 011236899999999999999999998765 368999999
Q ss_pred cCCCchhhhHHH---HHHHHHhCC-CeEEEEEEeccccCCccccccccCHHHHHhhCCCC---C--CCcEEEEECChhhH
Q 002724 796 NRTEDDILLREE---LDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEG---S--GDTLALACGPPPMI 866 (888)
Q Consensus 796 ~Rt~~Dil~~dE---L~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~---~--~~~~vyvCGPp~mi 866 (888)
+|+.+++++.++ |++|+++++ +++++++. +++|.+.+|++++. |.+.+.+. . ....||+|||++||
T Consensus 785 ~Rs~edl~~~del~~L~~la~~~~~~~~v~~tt----ddgs~G~~G~Vt~~-l~~ll~~~~~~~~~~~~~Vy~CGP~~Mm 859 (944)
T PRK12779 785 FRAKEFLFWTGDDERVGKLKAEFGDQLDVIYTT----NDGSFGVKGFVTGP-LEEMLKANQQGKGRTIAEVIAIGPPLMM 859 (944)
T ss_pred eCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEEe----cCCCCCCccccChH-HHHHHHhcccccccCCcEEEEECCHHHH
Confidence 999999998766 566777774 56665542 45678888999973 44443221 1 13679999999999
Q ss_pred HHHHHHHHHhcCCC
Q 002724 867 QFAVQPNLEKMNYD 880 (888)
Q Consensus 867 ~~av~~~L~~~Gv~ 880 (888)
+ ++...|+++|++
T Consensus 860 k-av~~~l~~~Gv~ 872 (944)
T PRK12779 860 R-AVSDLTKPYGVK 872 (944)
T ss_pred H-HHHHHHHHcCCC
Confidence 7 999999999998
No 79
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.88 E-value=3.4e-22 Score=227.09 Aligned_cols=181 Identities=21% Similarity=0.274 Sum_probs=141.7
Q ss_pred eeeeeeecccCCCC-CcEEEEEEEEEeecCC-CCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCC
Q 002724 681 LCMRAYTPTSSVDE-VGHFDLVVKIYFKGVH-PKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFA 758 (888)
Q Consensus 681 ~~~R~YTp~S~~~~-~g~leL~IK~y~~~~~-~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~ 758 (888)
...|+|||+|++.. .+.++|+||+...... .+.+ .|.+|+||..+++|+.|.|.+|.|.|.+. ....
T Consensus 162 l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~v~~p~g~F~lp----------~~~~ 230 (382)
T cd06207 162 IKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSR-YGLCSSYLAGLKVGQRVTVFIKKSSFKLP----------KDPK 230 (382)
T ss_pred CCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCee-cccHHHHHhhcCCCCEEEEEEECCcccCC----------CCCC
Confidence 77899999999864 6899999998632111 1222 69999999999999999999999988765 2335
Q ss_pred ceEEEEECCcCHHHHHHHHHHHHcC---CCCCceEEEEEecCCC-chhhhHHHHHHHHHhCCCeEEEEEEeccccCCccc
Q 002724 759 KKLAMLAGGTGITPIYQIMQAILKD---PEDETEMYVVYANRTE-DDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQY 834 (888)
Q Consensus 759 ~~ivmIAGGTGITP~~~ll~~ll~~---~~~~~~i~Li~~~Rt~-~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~ 834 (888)
+++||||+|||||||++++++.... .....+++||||+|+. .|++|++||++|++...+++++.++|+. ...
T Consensus 231 ~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd-~~~--- 306 (382)
T cd06207 231 KPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRD-QPK--- 306 (382)
T ss_pred CCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCC-CCC---
Confidence 7999999999999999999987532 2346789999999999 8999999999999888889999999875 222
Q ss_pred cccccCHHH------HHhhCCCCCCCcEEEEECChh-hHHHHHHHHHHhcCCC
Q 002724 835 STGFITEAI------LREHVPEGSGDTLALACGPPP-MIQFAVQPNLEKMNYD 880 (888)
Q Consensus 835 ~~Grv~~~~------L~~~l~~~~~~~~vyvCGPp~-mi~~av~~~L~~~Gv~ 880 (888)
+++|+..+ +.+.+. .....||+|||+. |++ +|+..|.++|..
T Consensus 307 -~~yVq~~l~~~~~~~~~~l~--~~~~~vYvCG~~~~M~~-~V~~~L~~~~~~ 355 (382)
T cd06207 307 -KVYVQDLIRENSDLVYQLLE--EGAGVIYVCGSTWKMPP-DVQEAFEEILKK 355 (382)
T ss_pred -ceEhHHHHHHCHHHHHHHHh--cCCCEEEEECCcccccH-HHHHHHHHHHHH
Confidence 34555432 222232 2335899999998 997 899999887654
No 80
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.87 E-value=2e-21 Score=243.27 Aligned_cols=193 Identities=21% Similarity=0.355 Sum_probs=160.8
Q ss_pred EEEEEEEEecCceeeeeeccCC------CCceEeee----eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 651 CKLVEKILISHDVRLFRFALPQ------EDQVLGLP----LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 651 ~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp----~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
++|++++.++++++.|+|..|. ||||+.|. ...|||||++.+.+.+.|+|+||.. |.+|
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a~~~~PGQFV~l~~~~~~errplSIa~~~~~~g~i~l~vk~v-----------G~~T 70 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVAASAEPGHFVMLRLYEGAERIPLTVADFDRKKGTITMVVQAL-----------GKTT 70 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcccCCCCCeeEEEEeCCCCeeEEEEecCcCCCCCEEEEEEEec-----------CcHH
Confidence 5799999999999999998875 89999887 3569999999887788999999984 8999
Q ss_pred HHH-hcCCCCCEE-EEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC
Q 002724 721 QYL-DSLSVGSIL-DVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT 798 (888)
Q Consensus 721 ~~L-~~L~~Gd~V-~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt 798 (888)
.+| +.+++||.| .|.||+|.+... ...++++|||||+||||+++|++++.+. ..+++++|++|+
T Consensus 71 ~~L~~~lk~Gd~l~~v~GPlG~~~~~-----------~~~~~vllVaGGiGIAPl~s~~r~l~~~---g~~v~li~g~R~ 136 (1006)
T PRK12775 71 REMMTKFKAGDTFEDFVGPLGLPQHI-----------DKAGHVVLVGGGLGVAPVYPQLRAFKEA---GARTTGIIGFRN 136 (1006)
T ss_pred HHHHhcCCCCCEEeeeecCCCCCCCC-----------CCCCeEEEEEEhHHHHHHHHHHHHHHhC---CCcEEEEEeCCC
Confidence 998 799999999 799999986533 2347899999999999999999998765 367999999999
Q ss_pred CchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhcC
Q 002724 799 EDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKMN 878 (888)
Q Consensus 799 ~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~G 878 (888)
.+++++.+||.++..+ + ++.+ +++|.+..|++++ .|.+.+.. .....||+|||++||+ ++...+++.|
T Consensus 137 ~~~l~~~del~~~~~~---~---~v~t---ddgs~G~~G~vt~-~l~~~l~~-~~~d~vy~CGP~~Mm~-av~~~~~~~g 204 (1006)
T PRK12775 137 KDLVFWEDKFGKYCDD---L---IVCT---DDGSYGKPGFVTA-ALKEVCEK-DKPDLVVAIGPLPMMN-ACVETTRPFG 204 (1006)
T ss_pred hHHcccHHHHHhhcCc---E---EEEE---CCCCCCCCCChHH-HHHHHhcc-CCCCEEEEECCHHHHH-HHHHHHHHCC
Confidence 9999999999877532 2 2222 4568888899987 45666543 2345799999999997 8999999999
Q ss_pred CC
Q 002724 879 YD 880 (888)
Q Consensus 879 v~ 880 (888)
++
T Consensus 205 i~ 206 (1006)
T PRK12775 205 VK 206 (1006)
T ss_pred Cc
Confidence 83
No 81
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.86 E-value=1.4e-21 Score=222.38 Aligned_cols=189 Identities=22% Similarity=0.313 Sum_probs=142.8
Q ss_pred CCceEeee--eeeeeeecccCCCC-CcEEEEEEEEEeecC-CCCCCCCChhcHHHhcCCCCCEEEE--EccccceeecCC
Q 002724 673 EDQVLGLP--LCMRAYTPTSSVDE-VGHFDLVVKIYFKGV-HPKFPNGGLMSQYLDSLSVGSILDV--KGPLGHIQYTGR 746 (888)
Q Consensus 673 pGQ~l~Lp--~~~R~YTp~S~~~~-~g~leL~IK~y~~~~-~~~~P~gG~~S~~L~~L~~Gd~V~I--kGP~G~f~~~g~ 746 (888)
.+|++.+- ...|+|||+|++.. .+.++|+|++..... ..+....|.+|.||+.+++|+.|.+ ++|.|.|.+.
T Consensus 149 ~~~~l~~~p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g~F~l~-- 226 (384)
T cd06206 149 LATFLAMLPPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHSAFRPP-- 226 (384)
T ss_pred HHHHHHhCcccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCCccCCC--
Confidence 36766543 67899999999853 578888888763211 1111126999999999999999985 5899988765
Q ss_pred CceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcC---CCCCceEEEEEecCCC-chhhhHHHHHHHHHhCCCeEEEE
Q 002724 747 GNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKD---PEDETEMYVVYANRTE-DDILLREELDDWAKKHDRVKVWY 822 (888)
Q Consensus 747 g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~---~~~~~~i~Li~~~Rt~-~Dil~~dEL~~l~~~~~~f~v~~ 822 (888)
....++++|||||||||||++|++++... .....+++|+|++|+. .|++|++||++|++ .+++++++
T Consensus 227 --------~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~-~~~~~l~~ 297 (384)
T cd06206 227 --------SDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEA-AGVVSVRR 297 (384)
T ss_pred --------CCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHH-CCCeEEEE
Confidence 23467999999999999999999987542 2334689999999999 79999999999987 56899999
Q ss_pred EEeccccCCccccccccCHHHHH------hhCCCCCCCcEEEEECChhhHHHHHHHHHHhcCCC
Q 002724 823 VVEKSIKEGWQYSTGFITEAILR------EHVPEGSGDTLALACGPPPMIQFAVQPNLEKMNYD 880 (888)
Q Consensus 823 ~~s~~~~~~w~~~~Grv~~~~L~------~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~Gv~ 880 (888)
++|+. +++ .+++++..+.+ +.+ .+++.+|+|||++|++ +|.+.|.+++..
T Consensus 298 a~Sr~-~~~---~~~yVq~~i~~~~~~~~~~~---~~~~~vyiCGp~~M~~-~v~~~L~~i~~~ 353 (384)
T cd06206 298 AYSRP-PGG---GCRYVQDRLWAEREEVWELW---EQGARVYVCGDGRMAP-GVREVLKRIYAE 353 (384)
T ss_pred Eeccc-CCC---CCEechhhHHhhHHHHHHHH---HCCcEEEEECCCchHH-HHHHHHHHHHHH
Confidence 99875 332 23555543321 112 2468899999999997 899999887765
No 82
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.86 E-value=1.8e-21 Score=219.37 Aligned_cols=184 Identities=20% Similarity=0.304 Sum_probs=139.4
Q ss_pred CCCceEeee--eeeeeeecccCCCC-CcEEEEEEEEEeecCCCCCCCCChhcHHHhc-CCCCCEEEEEccc-cceeecCC
Q 002724 672 QEDQVLGLP--LCMRAYTPTSSVDE-VGHFDLVVKIYFKGVHPKFPNGGLMSQYLDS-LSVGSILDVKGPL-GHIQYTGR 746 (888)
Q Consensus 672 ~pGQ~l~Lp--~~~R~YTp~S~~~~-~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~-L~~Gd~V~IkGP~-G~f~~~g~ 746 (888)
.+|||+.+- ...|+|||+|++.. .+.++|+|++.......+.+ .|.+|.||.. +++|+.|.+.+|. |.|.+.
T Consensus 133 ~~gq~l~l~~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~-~G~~S~~L~~~~~~Gd~v~v~~~~~~~F~lp-- 209 (360)
T cd06199 133 TAEELLDLLRPLQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRER-KGVASTFLADRLKEGDTVPVFVQPNPHFRLP-- 209 (360)
T ss_pred CHHHHHHhCcCCCCcceeeccCcccCCCeEEEEEEEeeecCCCCcc-ceehhHHHHhcCCCCCEEEEEEecCCCcCCC--
Confidence 368887764 77899999999864 57899999875221122223 6999999966 4699999999755 466654
Q ss_pred CceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCC-chhhhHHHHHHHHHhCCCeEEEEEEe
Q 002724 747 GNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTE-DDILLREELDDWAKKHDRVKVWYVVE 825 (888)
Q Consensus 747 g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~-~Dil~~dEL~~l~~~~~~f~v~~~~s 825 (888)
.....+++|||+|||||||++|+++.+.. ....+++|||++|+. .|++|++||++|+++..+++++.++|
T Consensus 210 --------~~~~~piImIa~GtGIAP~~s~l~~~~~~-~~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~S 280 (360)
T cd06199 210 --------EDPDAPIIMVGPGTGIAPFRAFLQEREAT-GAKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAFS 280 (360)
T ss_pred --------CCCCCCEEEEecCcChHHHHHHHHHHHhc-cCCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 23467999999999999999999998765 345789999999997 79999999999998888899999999
Q ss_pred ccccCCccccccccCHHHHH------hhCCCCCCCcEEEEECCh-hhHHHHHHHHHHh
Q 002724 826 KSIKEGWQYSTGFITEAILR------EHVPEGSGDTLALACGPP-PMIQFAVQPNLEK 876 (888)
Q Consensus 826 ~~~~~~w~~~~Grv~~~~L~------~~l~~~~~~~~vyvCGPp-~mi~~av~~~L~~ 876 (888)
++ .. ..++|+..+.+ +.+ .++..||+|||+ .|++ +|+++|.+
T Consensus 281 r~-~~----~~~yVq~~l~~~~~~~~~~~---~~~~~vYvCG~~~~M~~-~V~~~L~~ 329 (360)
T cd06199 281 RD-QA----EKVYVQDRMREQGAELWAWL---EEGAHFYVCGDAKRMAK-DVDAALLD 329 (360)
T ss_pred cC-CC----CCccHHHHHHHhHHHHHHHH---hCCCEEEEECCCccccH-HHHHHHHH
Confidence 76 32 23455442221 112 235889999999 8976 78777644
No 83
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.84 E-value=1.8e-20 Score=214.09 Aligned_cols=175 Identities=19% Similarity=0.323 Sum_probs=136.7
Q ss_pred eeeeeeecccCCCC-CcEEEEEEEEEeecCCCCCCCCChhcHHHhcCC-----CCCEEEEEc-cccceeecCCCceeecC
Q 002724 681 LCMRAYTPTSSVDE-VGHFDLVVKIYFKGVHPKFPNGGLMSQYLDSLS-----VGSILDVKG-PLGHIQYTGRGNFLVHG 753 (888)
Q Consensus 681 ~~~R~YTp~S~~~~-~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~-----~Gd~V~IkG-P~G~f~~~g~g~f~l~~ 753 (888)
...|+|||+|++.. .+.++|+|++... +..|.+|+||..+. +|+.|.+.+ |.|.|.+.
T Consensus 172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~------~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp--------- 236 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEF------PAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLP--------- 236 (398)
T ss_pred CCCcceeecCCcccCCCeEEEEEEEEEe------cCCChhhHHHHHhhhhhcCCCCEEEEEEecCCCcCCC---------
Confidence 67899999999865 5899999998631 11499999998888 999999998 56777654
Q ss_pred CCC-CCceEEEEECCcCHHHHHHHHHHHHcC-----CCCCceEEEEEecCCC-chhhhHHHHHHHHHhCCCeEEEEEEec
Q 002724 754 KPK-FAKKLAMLAGGTGITPIYQIMQAILKD-----PEDETEMYVVYANRTE-DDILLREELDDWAKKHDRVKVWYVVEK 826 (888)
Q Consensus 754 ~~~-~~~~ivmIAGGTGITP~~~ll~~ll~~-----~~~~~~i~Li~~~Rt~-~Dil~~dEL~~l~~~~~~f~v~~~~s~ 826 (888)
.. ..++++|||+|||||||++++++.... .....+++||||+|+. .|++|++||++|.++...++++.++|+
T Consensus 237 -~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~~~~~a~SR 315 (398)
T cd06203 237 -PDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILTRLIVAFSR 315 (398)
T ss_pred -CcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCceEEEEECC
Confidence 12 357999999999999999999987641 2345789999999999 799999999999988888889999998
Q ss_pred cccCCccccccccCHHHHHhhCCC-----CCCCcEEEEECCh-hhHHHHHHHHHH
Q 002724 827 SIKEGWQYSTGFITEAILREHVPE-----GSGDTLALACGPP-PMIQFAVQPNLE 875 (888)
Q Consensus 827 ~~~~~w~~~~Grv~~~~L~~~l~~-----~~~~~~vyvCGPp-~mi~~av~~~L~ 875 (888)
+ .+.| +.+++|++.+.+ .... ...+..||+|||+ .|.+ +|+.+|.
T Consensus 316 d-~~~~-g~k~yVqd~l~~-~~~~~~~~l~~~~~~iYvCG~~~~M~~-~V~~~l~ 366 (398)
T cd06203 316 D-ENDG-STPKYVQDKLEE-RGKKLVDLLLNSNAKIYVCGDAKGMAK-DVRDTFV 366 (398)
T ss_pred C-CCCC-CCceecchHHHh-CHHHHHHHHhcCCcEEEEECCcchhhH-HHHHHHH
Confidence 6 3333 467888874432 2110 1246899999995 6765 8888776
No 84
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.84 E-value=3.8e-20 Score=192.65 Aligned_cols=174 Identities=22% Similarity=0.358 Sum_probs=135.4
Q ss_pred EEEEec-CceeeeeeccCC-----CCceEeee-------eeeeeeecccCCCC-CcEEEEEEEEEeecCCCCCCCCChhc
Q 002724 655 EKILIS-HDVRLFRFALPQ-----EDQVLGLP-------LCMRAYTPTSSVDE-VGHFDLVVKIYFKGVHPKFPNGGLMS 720 (888)
Q Consensus 655 ~k~~ls-~dv~~f~f~lp~-----pGQ~l~Lp-------~~~R~YTp~S~~~~-~g~leL~IK~y~~~~~~~~P~gG~~S 720 (888)
.++.++ +++..++|..+. ||||+.|. ...|+|||+|.+.+ .+.++|+||.+ +|..|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t 72 (210)
T cd06186 3 TVELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTT 72 (210)
T ss_pred EEEEecCCCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHH
Confidence 345556 889999998763 79997776 25799999999876 68999999985 48888
Q ss_pred HHHhcCC------CCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCC---CCceEE
Q 002724 721 QYLDSLS------VGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPE---DETEMY 791 (888)
Q Consensus 721 ~~L~~L~------~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~---~~~~i~ 791 (888)
..++.+. .|+.+.|.||+|.+... ....++++||||||||||+++++++++.... ...+++
T Consensus 73 ~~~~~~~~~~~~~~~~~v~v~GP~G~~~~~----------~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~ 142 (210)
T cd06186 73 RLLRKALKSPGGGVSLKVLVEGPYGSSSED----------LLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVK 142 (210)
T ss_pred HHHHHHHhCcCCCceeEEEEECCCCCCccC----------hhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEE
Confidence 8887776 89999999999997622 1356899999999999999999999987632 467999
Q ss_pred EEEecCCCchh-hhHHHHHHHHHhC-CCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChhhHHHH
Q 002724 792 VVYANRTEDDI-LLREELDDWAKKH-DRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPPMIQFA 869 (888)
Q Consensus 792 Li~~~Rt~~Di-l~~dEL~~l~~~~-~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~a 869 (888)
|+|++|+.+++ .++++|++ ..+. ...+++..+++ +++|||.+|++ .
T Consensus 143 l~w~~r~~~~~~~~~~~l~~-~~~~~~~~~~~i~~T~------------------------------v~~CGp~~~~~-~ 190 (210)
T cd06186 143 LVWVVRDREDLEWFLDELRA-AQELEVDGEIEIYVTR------------------------------VVVCGPPGLVD-D 190 (210)
T ss_pred EEEEECCHHHhHHHHHHHHh-hhhccCCceEEEEEee------------------------------EEEECchhhcc-H
Confidence 99999999995 79999975 1111 11133333332 99999999997 8
Q ss_pred HHHHHHhcCCC
Q 002724 870 VQPNLEKMNYD 880 (888)
Q Consensus 870 v~~~L~~~Gv~ 880 (888)
++..+.+.+..
T Consensus 191 ~~~~~~~~~~~ 201 (210)
T cd06186 191 VRNAVAKKGGT 201 (210)
T ss_pred HHHHHhhcCCC
Confidence 88888765544
No 85
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.84 E-value=2.8e-20 Score=213.49 Aligned_cols=181 Identities=18% Similarity=0.242 Sum_probs=134.1
Q ss_pred eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCCCChhcHHHhcCC---------------------CCCEEEEEccc
Q 002724 681 LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPNGGLMSQYLDSLS---------------------VGSILDVKGPL 738 (888)
Q Consensus 681 ~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~---------------------~Gd~V~IkGP~ 738 (888)
...|.|||+|++. ..+.++|+||+............|.+|.||..+. +|+.|.+..|.
T Consensus 176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~ 255 (416)
T cd06204 176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR 255 (416)
T ss_pred CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence 7789999999985 4678999998753311110111399999997666 89999999999
Q ss_pred cceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcC---CCCCceEEEEEecCCC-chhhhHHHHHHHHHh
Q 002724 739 GHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKD---PEDETEMYVVYANRTE-DDILLREELDDWAKK 814 (888)
Q Consensus 739 G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~---~~~~~~i~Li~~~Rt~-~Dil~~dEL~~l~~~ 814 (888)
|.|.+. ....+++||||||||||||++|+++.+.. .....+++||||+|+. .|++|++||++|++.
T Consensus 256 g~F~lp----------~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~ 325 (416)
T cd06204 256 SNFRLP----------TKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKL 325 (416)
T ss_pred CCCCCC----------CCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccchHHHHHHHHHc
Confidence 987655 23458999999999999999999986532 1235689999999998 799999999999987
Q ss_pred CCCeEEEEEEeccccCCccccccccCH--HHHHhhCCCCCCCcEEEEECChh-hHHHHHHHHHHh
Q 002724 815 HDRVKVWYVVEKSIKEGWQYSTGFITE--AILREHVPEGSGDTLALACGPPP-MIQFAVQPNLEK 876 (888)
Q Consensus 815 ~~~f~v~~~~s~~~~~~w~~~~Grv~~--~~L~~~l~~~~~~~~vyvCGPp~-mi~~av~~~L~~ 876 (888)
+.++++++++|+. .+...+.++++.+ +.+.+.+ .++..||+|||++ |++ +|+..|.+
T Consensus 326 ~~~~~l~~a~Sr~-~~~k~yVq~~i~~~~~~~~~~l---~~~~~vYvCGp~~~M~~-~V~~~L~~ 385 (416)
T cd06204 326 GGLLELVTAFSRE-QPKKVYVQHRLAEHAEQVWELI---NEGAYIYVCGDAKNMAR-DVEKTLLE 385 (416)
T ss_pred CCceEEEEEECcC-CCCCcchHHHHHHhHHHHHHHH---HcCCEEEEECCcccchH-HHHHHHHH
Confidence 7889999999875 3222233333322 1111122 2358899999998 886 88887754
No 86
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.83 E-value=1.3e-20 Score=224.94 Aligned_cols=187 Identities=20% Similarity=0.268 Sum_probs=142.2
Q ss_pred CCCceEeee--eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCCCChhcHHHhc-CCCCCEEEEEccc-cceeecCC
Q 002724 672 QEDQVLGLP--LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPNGGLMSQYLDS-LSVGSILDVKGPL-GHIQYTGR 746 (888)
Q Consensus 672 ~pGQ~l~Lp--~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~-L~~Gd~V~IkGP~-G~f~~~g~ 746 (888)
.+|||+.+- ...|+|||+|++. ..+.++|+|++.....+.+.+ .|.+|.||.. +++|++|.|.+|. |.|.+.
T Consensus 370 ~~gq~v~ll~~~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~-~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp-- 446 (597)
T TIGR01931 370 DAEQLISLLRPLTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRAR-LGGASGFLAERLKEGDTVPVYIEPNDNFRLP-- 446 (597)
T ss_pred CHHHHHHhCcccCCceeeeccCcccCCCEEEEEEEEEEecCCCCcc-ccchhHHHHhhCCCCCEEEEEEeeCCcccCC--
Confidence 468987764 7789999999985 367899999875433333344 7999999965 9999999999865 466554
Q ss_pred CceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC-CchhhhHHHHHHHHHhCCCeEEEEEEe
Q 002724 747 GNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT-EDDILLREELDDWAKKHDRVKVWYVVE 825 (888)
Q Consensus 747 g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt-~~Dil~~dEL~~l~~~~~~f~v~~~~s 825 (888)
....+++||||+|||||||++|++++... ....+++||||+|+ ..|++|++||+++.++...+++...+|
T Consensus 447 --------~~~~~piImIg~GTGIAPfrsflq~r~~~-~~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afS 517 (597)
T TIGR01931 447 --------EDPDTPIIMIGPGTGVAPFRAFMQERAED-GAKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFS 517 (597)
T ss_pred --------CCCCCCEEEEcCCcCchhHHHHHHHHHHc-cCCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEe
Confidence 23457999999999999999999998765 34578999999999 779999999999998877777888888
Q ss_pred ccccCCccccccccCHHHHHhhCCC----CCCCcEEEEEC-ChhhHHHHHHHHHHhc
Q 002724 826 KSIKEGWQYSTGFITEAILREHVPE----GSGDTLALACG-PPPMIQFAVQPNLEKM 877 (888)
Q Consensus 826 ~~~~~~w~~~~Grv~~~~L~~~l~~----~~~~~~vyvCG-Pp~mi~~av~~~L~~~ 877 (888)
+. . ..+++|+..+.+ ...+ ..++..||+|| |+.|++ +|.+.|.+.
T Consensus 518 Rd-~----~~k~yVqd~l~e-~~~~~~~~l~~~a~vYvCG~~~~M~~-~V~~~L~~i 567 (597)
T TIGR01931 518 RD-Q----AEKIYVQHRIRE-QGAELWQWLQEGAHIYVCGDAKKMAK-DVHQALLDI 567 (597)
T ss_pred cC-C----CCCccHHHHHHH-hHHHHHHHHhCCcEEEEECCCccccH-HHHHHHHHH
Confidence 64 2 134666653332 2110 02358899999 888986 888887654
No 87
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.83 E-value=1.9e-21 Score=185.41 Aligned_cols=84 Identities=51% Similarity=0.893 Sum_probs=79.3
Q ss_pred CCCccCHHHHHhccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhh-chHHHHHhhhcCceeEeccC
Q 002724 525 TSNTYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELITT 603 (888)
Q Consensus 525 ~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~-Hs~~a~~~L~~~~IG~l~~~ 603 (888)
..+.||++|+++||+.++|||+|+|+|||||+|+++||||.++|+.+||+|||+.|... ||..|++||++|+||.+..+
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 46889999999999999999999999999999999999999999999999999999998 99999999999999999877
Q ss_pred CCCCC
Q 002724 604 GYTSD 608 (888)
Q Consensus 604 ~~~~~ 608 (888)
.....
T Consensus 83 ~~~~~ 87 (124)
T KOG0537|consen 83 ARPVV 87 (124)
T ss_pred Cccce
Confidence 66543
No 88
>PLN02292 ferric-chelate reductase
Probab=99.83 E-value=1.8e-19 Score=215.38 Aligned_cols=195 Identities=21% Similarity=0.310 Sum_probs=150.7
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC-----CCceEee--e----eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCC
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGL--P----LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPN 715 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~L--p----~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~ 715 (888)
...+++++++.+++++.+++|..+. ||||+.+ | .+.|||||+|.+. +.+.++|+||.+
T Consensus 324 ~~~~~Iv~~~~l~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~---------- 393 (702)
T PLN02292 324 RNNVKLVSARVLPCDTVELNFSKNPMLMYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQ---------- 393 (702)
T ss_pred hcceEEEEEEEcCCCEEEEEEEcCCCCCcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcC----------
Confidence 3568899999999999999998764 7987555 4 5789999999874 567899999974
Q ss_pred CChhcHHH-hcCCCCCE-----EEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCC---
Q 002724 716 GGLMSQYL-DSLSVGSI-----LDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPED--- 786 (888)
Q Consensus 716 gG~~S~~L-~~L~~Gd~-----V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~--- 786 (888)
|.+|++| +.++.|+. |.++||+|.+... ....++++|||||+||||+++++++++++..+
T Consensus 394 -G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~----------~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~ 462 (702)
T PLN02292 394 -GKWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTD----------FLRHESLVMVSGGSGITPFISIIRDLIYTSSTETC 462 (702)
T ss_pred -CchhHHHHHhCCCCCccccceEEEECCccCCccc----------cccCCcEEEEEeccCHHHHHHHHHHHHhccccccC
Confidence 7889888 67788884 5799999986532 12347999999999999999999999875322
Q ss_pred -CceEEEEEecCCCchhhhHHHHH-------HHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCC--CCcE
Q 002724 787 -ETEMYVVYANRTEDDILLREELD-------DWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGS--GDTL 856 (888)
Q Consensus 787 -~~~i~Li~~~Rt~~Dil~~dEL~-------~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~--~~~~ 856 (888)
.+++.|+|++|+.+|+.+++++. +++++ .++++...++++.++.-++..| ++++++++++.+. ++..
T Consensus 463 ~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~-~~~~i~iyvTr~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~ 539 (702)
T PLN02292 463 KIPKITLICAFKNSSDLSMLDLILPTSGLETELSSF-IDIQIKAFVTREKEAGVKESTG--NMNIIKTLWFKPNLSDQPI 539 (702)
T ss_pred CCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhc-CCceEEEEEeCCCCCCCccccc--chhhhhhhcCCCCCCCCce
Confidence 26899999999999999876554 23333 3566666666553332355556 8889999877665 8899
Q ss_pred EEEECChhhH
Q 002724 857 ALACGPPPMI 866 (888)
Q Consensus 857 vyvCGPp~mi 866 (888)
+++|||+.-+
T Consensus 540 ~~~~Gp~~~~ 549 (702)
T PLN02292 540 SPILGPNSWL 549 (702)
T ss_pred EEEeCCCchH
Confidence 9999999754
No 89
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.83 E-value=8.4e-20 Score=208.96 Aligned_cols=179 Identities=19% Similarity=0.270 Sum_probs=133.4
Q ss_pred eeeeeeecccCCC-CCcEEEEEEEEEeec-C--CCCCCCCChhcHHHhcCCCCCEEEEEcccc-ceeecCCCceeecCCC
Q 002724 681 LCMRAYTPTSSVD-EVGHFDLVVKIYFKG-V--HPKFPNGGLMSQYLDSLSVGSILDVKGPLG-HIQYTGRGNFLVHGKP 755 (888)
Q Consensus 681 ~~~R~YTp~S~~~-~~g~leL~IK~y~~~-~--~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G-~f~~~g~g~f~l~~~~ 755 (888)
...|+|||+|++. ..+.++|+|++.... . ....+ .|.+|+||+.|++|+.|.|.++.+ .|.+. .
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp----------~ 243 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVH-HGVCSTWLNGLTPGDTVPCFVRSAPSFHLP----------E 243 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcc-cccHHHHHHhCCCCCEEEEEEeeCCccCCC----------C
Confidence 6789999999986 367788888774211 0 01112 599999999999999999987643 45443 2
Q ss_pred CCCceEEEEECCcCHHHHHHHHHHHHcC-------CCCCceEEEEEecCCC-chhhhHHHHHHHHHhCCCeEEEEEEecc
Q 002724 756 KFAKKLAMLAGGTGITPIYQIMQAILKD-------PEDETEMYVVYANRTE-DDILLREELDDWAKKHDRVKVWYVVEKS 827 (888)
Q Consensus 756 ~~~~~ivmIAGGTGITP~~~ll~~ll~~-------~~~~~~i~Li~~~Rt~-~Dil~~dEL~~l~~~~~~f~v~~~~s~~ 827 (888)
...+++||||+|||||||++||++.+.. .....+++||||+|+. .|++|++||+++.+....++++.++|+.
T Consensus 244 ~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~~~~~~~a~SR~ 323 (406)
T cd06202 244 DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGVLTEVYTALSRE 323 (406)
T ss_pred CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCCCceEEEEEcCC
Confidence 3457999999999999999999986421 1345789999999999 8999999999999887888899999875
Q ss_pred ccCCccccccccCHHHHHhhCCC-----CCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 828 IKEGWQYSTGFITEAILREHVPE-----GSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 828 ~~~~w~~~~Grv~~~~L~~~l~~-----~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
... .+++|++.+ .+.... ...++.||+|||+.|++ +|++.|.+
T Consensus 324 -~~~---~k~yVq~~l-~~~~~~v~~~l~~~~~~iYvCG~~~M~~-~V~~~L~~ 371 (406)
T cd06202 324 -PGK---PKTYVQDLL-KEQAESVYDALVREGGHIYVCGDVTMAE-DVSQTIQR 371 (406)
T ss_pred -CCC---CCeehhhHH-HHhHHHHHHHHHhCCCEEEEeCCCchHH-HHHHHHHH
Confidence 221 256776633 322110 03568999999999997 88887754
No 90
>PRK06214 sulfite reductase; Provisional
Probab=99.82 E-value=1.1e-19 Score=212.08 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=129.5
Q ss_pred eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCCCChhcHHH-hcCCCCCEEEEEc--cccceeecCCCceeecCCCC
Q 002724 681 LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPNGGLMSQYL-DSLSVGSILDVKG--PLGHIQYTGRGNFLVHGKPK 756 (888)
Q Consensus 681 ~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~gG~~S~~L-~~L~~Gd~V~IkG--P~G~f~~~g~g~f~l~~~~~ 756 (888)
...|+|||+|++. ..+.|+|+||+.......+.+ .|.+|+|| +.+++|+.|.|.+ |.| |.+. ..
T Consensus 314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~-~G~~S~~L~~~l~~Gd~V~v~i~~~~g-F~lp----------~~ 381 (530)
T PRK06214 314 LQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLR-LGVASTFLGERLAPGTRVRVYVQKAHG-FALP----------AD 381 (530)
T ss_pred CCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccc-cchhhHHHHhcCCCCCEEEEEecCCCC-CccC----------CC
Confidence 6789999999986 368999999875322222333 69999999 5899999998865 444 6544 23
Q ss_pred CCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC-CchhhhHHHHHHHHHhCCCeEEEEEEeccccCCcccc
Q 002724 757 FAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT-EDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYS 835 (888)
Q Consensus 757 ~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt-~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~ 835 (888)
...++||||+|||||||++||++.+.. ....+++|||++|. ..|++|++||++|.+....++++..+|+. .....+.
T Consensus 382 ~~~PiImIg~GTGIAPfrsfLq~r~~~-~~~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~l~~l~~afSRd-~~~k~YV 459 (530)
T PRK06214 382 PNTPIIMVGPGTGIAPFRAFLHERAAT-KAPGRNWLFFGHQRSATDFFYEDELNGLKAAGVLTRLSLAWSRD-GEEKTYV 459 (530)
T ss_pred CCCCEEEEcCCeeHHHHHHHHHHHHHh-cCCCCeEEEEEecCChhhhHHHHHHHHHHHhCCceEEEEEEecC-CCCCCch
Confidence 457999999999999999999987654 23468999999965 67999999999999887778888888875 2222233
Q ss_pred ccccCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHh
Q 002724 836 TGFITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLEK 876 (888)
Q Consensus 836 ~Grv~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~ 876 (888)
+++|.+. ..+......++..||||||..||.+.|+..|.+
T Consensus 460 Q~~L~e~-~~~l~~~l~~~a~iYVCGp~~~M~~~V~~~L~~ 499 (530)
T PRK06214 460 QDRMREN-GAELWKWLEEGAHFYVCGDAKRMAKDVERALVD 499 (530)
T ss_pred hhHHHHH-HHHHHhhhcCCcEEEEeCChHHHHHHHHHHHHH
Confidence 3333221 111111113468899999987553478776644
No 91
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.80 E-value=2e-19 Score=214.04 Aligned_cols=184 Identities=18% Similarity=0.289 Sum_probs=137.6
Q ss_pred CCCceEeee--eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCCCChhcHHH-hcCCCCCEEEEEcccc-ceeecCC
Q 002724 672 QEDQVLGLP--LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPNGGLMSQYL-DSLSVGSILDVKGPLG-HIQYTGR 746 (888)
Q Consensus 672 ~pGQ~l~Lp--~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~gG~~S~~L-~~L~~Gd~V~IkGP~G-~f~~~g~ 746 (888)
.++|++.+- ...|+|||+|++. ..+.++|+|++.....+.+.. .|.+|.|| +.+++|+.|.|.+|.| +|.+.
T Consensus 373 ~~~q~l~ll~~l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~-~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp-- 449 (600)
T PRK10953 373 DAEQLIGLLRPLTPRLYSIASSQAEVENEVHITVGVVRYDIEGRAR-AGGASSFLADRLEEEGEVRVFIEHNDNFRLP-- 449 (600)
T ss_pred CHHHHHHhCCCCCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCc-CceEhhhhhhcCCCCCEEEEEeccCCcccCC--
Confidence 467887664 6789999999985 457899988664322222223 69999999 5799999999999875 66654
Q ss_pred CceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC-CchhhhHHHHHHHHHhCCCeEEEEEEe
Q 002724 747 GNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT-EDDILLREELDDWAKKHDRVKVWYVVE 825 (888)
Q Consensus 747 g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt-~~Dil~~dEL~~l~~~~~~f~v~~~~s 825 (888)
....+++||||+|||||||+++|++.... ....+++||||+|+ ..|++|++||++|.++....++....|
T Consensus 450 --------~~~~~piImIg~GTGIAPfrsflq~r~~~-~~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afS 520 (600)
T PRK10953 450 --------ANPETPVIMIGPGTGIAPFRAFMQQRAAD-GAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWS 520 (600)
T ss_pred --------CCCCCCEEEEecCcCcHHHHHHHHHHHHc-CCCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEEC
Confidence 23467999999999999999999998765 34578999999999 779999999999998876666777777
Q ss_pred ccccCCccccccccCHHHHH------hhCCCCCCCcEEEEECChh-hHHHHHHHHHHh
Q 002724 826 KSIKEGWQYSTGFITEAILR------EHVPEGSGDTLALACGPPP-MIQFAVQPNLEK 876 (888)
Q Consensus 826 ~~~~~~w~~~~Grv~~~~L~------~~l~~~~~~~~vyvCGPp~-mi~~av~~~L~~ 876 (888)
+. .. .+++|+..+.+ +.+ .++..|||||+.. |.+ .|+..|.+
T Consensus 521 Rd-~~----~k~YVQ~~l~e~~~~l~~~l---~~ga~~YVCG~~~~M~~-~V~~~L~~ 569 (600)
T PRK10953 521 RD-QK----EKIYVQDKLREQGAELWRWI---NDGAHIYVCGDANRMAK-DVEQALLE 569 (600)
T ss_pred CC-CC----CCCcHHHHHHHHHHHHHHHH---HCCcEEEEECCCccchH-HHHHHHHH
Confidence 64 21 24566553322 222 3468999999975 654 77776643
No 92
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.75 E-value=1.1e-18 Score=163.08 Aligned_cols=77 Identities=32% Similarity=0.654 Sum_probs=72.8
Q ss_pred CCccCHHHHHhccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhhchH-HHHHhhhcCceeEecc
Q 002724 526 SNTYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSD-KAKKMLEDYRIGELIT 602 (888)
Q Consensus 526 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~Hs~-~a~~~L~~~~IG~l~~ 602 (888)
...+|.+||+||++.+|||++|+|+|||||.|++.||||.+.|+.++|+|+|..|+.+|.+ +-++||+.|+||.|.+
T Consensus 67 ~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 67 PIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 3469999999999999999999999999999999999999999999999999999999999 5688999999999864
No 93
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.74 E-value=4.5e-18 Score=158.38 Aligned_cols=106 Identities=35% Similarity=0.733 Sum_probs=90.9
Q ss_pred EEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCC-eEEEEEEeccccCCccccccccCH
Q 002724 763 MLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDR-VKVWYVVEKSIKEGWQYSTGFITE 841 (888)
Q Consensus 763 mIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~-f~v~~~~s~~~~~~w~~~~Grv~~ 841 (888)
|||||||||||+++++++++. +...+++|+|++|+.+|++++++|+++++++++ |+++++ +.. .++|.+..|++++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~g~v~~ 77 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSP-DDGWDGFKGRVTD 77 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTT-TSSTTSEESSHHH
T ss_pred CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-ccc-ccccCCceeehhH
Confidence 799999999999999999987 678999999999999999999999999998865 777777 333 6788899999999
Q ss_pred HHHHhhCC--CCCCCcEEEEECChhhHHHHHHH
Q 002724 842 AILREHVP--EGSGDTLALACGPPPMIQFAVQP 872 (888)
Q Consensus 842 ~~L~~~l~--~~~~~~~vyvCGPp~mi~~av~~ 872 (888)
.++++.+. ....+..||+|||++|++ ++++
T Consensus 78 ~~~~~~~~~~~~~~~~~v~iCGp~~m~~-~v~~ 109 (109)
T PF00175_consen 78 LLLEDLLPEKIDPDDTHVYICGPPPMMK-AVRK 109 (109)
T ss_dssp HHHHHHHHHHHCTTTEEEEEEEEHHHHH-HHHH
T ss_pred HHHHhhcccccCCCCCEEEEECCHHHHH-HhcC
Confidence 87766654 125688999999999997 7653
No 94
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.71 E-value=6.8e-18 Score=147.85 Aligned_cols=74 Identities=46% Similarity=0.821 Sum_probs=70.4
Q ss_pred ccCHHHHHhccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHH-HhhchHHHHHhhhc-CceeEec
Q 002724 528 TYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEF-DAIHSDKAKKMLED-YRIGELI 601 (888)
Q Consensus 528 ~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F-~~~Hs~~a~~~L~~-~~IG~l~ 601 (888)
.||++||++|+..++|||+|+|+|||||+|+..||||...|..++|+|+|+.| ...|+..++++|++ |+||+|.
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999 88899999999999 9999983
No 95
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.1e-16 Score=186.02 Aligned_cols=179 Identities=21% Similarity=0.276 Sum_probs=137.2
Q ss_pred eeeeeeecccCCCC-CcEEEEEEEEEeecCCCCCCCCChhcHHHhcCCC-CCEEEEEcccc-ceeecCCCceeecCCCCC
Q 002724 681 LCMRAYTPTSSVDE-VGHFDLVVKIYFKGVHPKFPNGGLMSQYLDSLSV-GSILDVKGPLG-HIQYTGRGNFLVHGKPKF 757 (888)
Q Consensus 681 ~~~R~YTp~S~~~~-~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~~-Gd~V~IkGP~G-~f~~~g~g~f~l~~~~~~ 757 (888)
+..|.|||+|++.. .+.++|+|.+.....+.+ ...|.+|.||..+.. |+.|.|....+ +|.+. ...
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~-~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp----------~~~ 439 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGR-ERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLP----------EDP 439 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCC-cccccchHHHHhhhcCCCeEEEEeccCCccccC----------CCC
Confidence 77899999998874 477888887766544433 336999999966665 99998877666 44444 234
Q ss_pred CceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCC-CchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccc
Q 002724 758 AKKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRT-EDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYST 836 (888)
Q Consensus 758 ~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt-~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~ 836 (888)
.+++||||.|||||||++++++.... ....+.+||||+|+ ..|++|++|++++.+..-.+++....|+. .+.-.|.+
T Consensus 440 ~~PiIMIG~GTGIAPFRafvq~r~~~-~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRd-q~~KiYVQ 517 (587)
T COG0369 440 ETPIIMIGPGTGIAPFRAFVQERAAN-GAEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRD-QEEKIYVQ 517 (587)
T ss_pred CCceEEEcCCCCchhHHHHHHHHHhc-cccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeec-CCCCccHH
Confidence 49999999999999999999999877 33448999999999 67999999999998877688898999886 44444544
Q ss_pred cccC--HHHHHhhCCCCCCCcEEEEEC-ChhhHHHHHHHHHHh
Q 002724 837 GFIT--EAILREHVPEGSGDTLALACG-PPPMIQFAVQPNLEK 876 (888)
Q Consensus 837 Grv~--~~~L~~~l~~~~~~~~vyvCG-Pp~mi~~av~~~L~~ 876 (888)
-++- .+.|.+.+. +...+|||| ...|.. .|.++|.+
T Consensus 518 d~lre~~del~~~l~---~ga~~YVCGd~~~Ma~-dV~~AL~~ 556 (587)
T COG0369 518 DRLREQADELWEWLE---EGAHIYVCGDAKGMAK-DVEEALLD 556 (587)
T ss_pred HHHHHhHHHHHHHHH---CCCEEEEeCCCccchH-HHHHHHHH
Confidence 4443 234455554 348999999 888875 88888764
No 96
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.67 E-value=1.1e-16 Score=166.14 Aligned_cols=200 Identities=24% Similarity=0.353 Sum_probs=141.2
Q ss_pred CeeeEEEEEEEEecCceeeeeeccCC---------CCceEeee----------eeeeeeecccCCCCCcEEEEEEEEEee
Q 002724 647 EKIPCKLVEKILISHDVRLFRFALPQ---------EDQVLGLP----------LCMRAYTPTSSVDEVGHFDLVVKIYFK 707 (888)
Q Consensus 647 ~~~~~~Lv~k~~ls~dv~~f~f~lp~---------pGQ~l~Lp----------~~~R~YTp~S~~~~~g~leL~IK~y~~ 707 (888)
.|.+++|++++.++.|+..|.+.... ||||+.+- +..|.||-.+... .+.|.|.||..
T Consensus 148 G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~-rN~~R~sVr~~-- 224 (385)
T KOG3378|consen 148 GEVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTC-RNQFRISVRRV-- 224 (385)
T ss_pred CccceeeeeeeccccceeEEEecCCCcceeeccCCCCceEEEeecCCccchhHHHHHHHhhhhhhh-ccceeEEEeeh--
Confidence 57899999999999999999987643 79998775 3345566555433 46799999985
Q ss_pred cCCCCCCCCChhcHHH-hcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCC
Q 002724 708 GVHPKFPNGGLMSQYL-DSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPED 786 (888)
Q Consensus 708 ~~~~~~P~gG~~S~~L-~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~ 786 (888)
.+|.+|+|+ +++++||.|.++.|-|+|.|.. ......++++++|||+||||+++||+..+.
T Consensus 225 -------A~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r-------~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~---- 286 (385)
T KOG3378|consen 225 -------AGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKR-------SEENVNRPLLCFAGGIGITPLIPIIETALL---- 286 (385)
T ss_pred -------hchhhHHHhhccccccceeeccCCCccceeeh-------hhhccCCceEEecCCcCccccHHHHHHHHh----
Confidence 279999999 8999999999999999999971 123456899999999999999999998754
Q ss_pred CceEEEEEecCCCchhh------hHHH---HHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEE
Q 002724 787 ETEMYVVYANRTEDDIL------LREE---LDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLA 857 (888)
Q Consensus 787 ~~~i~Li~~~Rt~~Dil------~~dE---L~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~v 857 (888)
.|.+|-..-++ +++. -+.+..+..+.+-..+-+ .....|+++.|++.- ...++|
T Consensus 287 ------C~~~RP~~~~~~~~~~K~k~~~K~~e~~~~E~s~~~~~IV~~--------~~~~iI~~~~L~~~~---~s~~Di 349 (385)
T KOG3378|consen 287 ------CYSSRPFKQWLEQLKLKYKENLKLKEFFSEESSVTKEQIVDE--------VMTRIINEEDLEKLD---LSECDI 349 (385)
T ss_pred ------cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--------hhhhhcCHHHhhhcC---hhhCce
Confidence 34444222111 1100 111222221111111100 112356666666543 356899
Q ss_pred EEECChhhHHHHHHHHHHhcCCCCCCCEE
Q 002724 858 LACGPPPMIQFAVQPNLEKMNYDTKDSLL 886 (888)
Q Consensus 858 yvCGPp~mi~~av~~~L~~~Gv~~~~~I~ 886 (888)
|+|||..+|+ +++..|.++|+. .+.|+
T Consensus 350 Y~~G~~~~M~-~~~~~L~~L~~~-~~~v~ 376 (385)
T KOG3378|consen 350 YMLGPNNYMR-FVKQELVKLGVE-PNKVQ 376 (385)
T ss_pred eeeCcHHHHH-HHHHHHHHhcCC-cccee
Confidence 9999999998 999999999998 77765
No 97
>PLN02631 ferric-chelate reductase
Probab=99.66 E-value=1.7e-15 Score=181.28 Aligned_cols=156 Identities=19% Similarity=0.318 Sum_probs=124.8
Q ss_pred eEEEEEEEEecCceeeeeeccCC-----CCceEeee------eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCCCC
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP------LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPNGG 717 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp------~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~gG 717 (888)
.+++++.+.+++++..++|..+. ||||+.|. .+.||||++|.+. +.+.++|+||. .|
T Consensus 309 ~~~lv~~~~l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~G 377 (699)
T PLN02631 309 RSRLVSARILPSDNLELTFSKTPGLHYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QG 377 (699)
T ss_pred eEEEEEEEEeCCCeEEEEEEcCCCCcCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CC
Confidence 46788888899999999987543 79987665 5679999999874 46789999997 48
Q ss_pred hhcHHH-hcCCC-CC--EEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCC----Cce
Q 002724 718 LMSQYL-DSLSV-GS--ILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPED----ETE 789 (888)
Q Consensus 718 ~~S~~L-~~L~~-Gd--~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~----~~~ 789 (888)
.+|++| +.++. |+ .|.+.||+|.+... ....++++|||||+||||++++++++++...+ ..+
T Consensus 378 g~T~~L~~~l~~~g~~i~V~VeGPYG~~~~~----------~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~ 447 (699)
T PLN02631 378 SWTQKLYTHLSSSIDSLEVSTEGPYGPNSFD----------VSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPD 447 (699)
T ss_pred hHHHHHHHhhhcCCCeeEEEEECCCCCCCCC----------cCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCc
Confidence 899999 55654 45 68889999986533 23567899999999999999999999865221 247
Q ss_pred EEEEEecCCCchhhhHHHHHHH------HHhCCCeEEEEEEecc
Q 002724 790 MYVVYANRTEDDILLREELDDW------AKKHDRVKVWYVVEKS 827 (888)
Q Consensus 790 i~Li~~~Rt~~Dil~~dEL~~l------~~~~~~f~v~~~~s~~ 827 (888)
++|+|++|+.+|++++|||..+ .++ .++++..++|++
T Consensus 448 V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~ni~i~iyVTR~ 490 (699)
T PLN02631 448 VLLVCSFKHYHDLAFLDLIFPLDISVSDISR-LNLRIEAYITRE 490 (699)
T ss_pred EEEEEEECCHHHhhhHHHHhhhccchhhhhc-CceEEEEEEcCC
Confidence 9999999999999999999863 122 489999999884
No 98
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.65 E-value=4.3e-15 Score=178.58 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=133.1
Q ss_pred EEEEEEEecCceeeeeeccCC-----CCceEeee------eeeeeeecccCCC-CCcEEEEEEEEEeecCCCCCCCCChh
Q 002724 652 KLVEKILISHDVRLFRFALPQ-----EDQVLGLP------LCMRAYTPTSSVD-EVGHFDLVVKIYFKGVHPKFPNGGLM 719 (888)
Q Consensus 652 ~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp------~~~R~YTp~S~~~-~~g~leL~IK~y~~~~~~~~P~gG~~ 719 (888)
.+++++.+++++..+++..+. ||||+.+. ...|||||+|.+. +++.++|.||.. |..
T Consensus 315 ~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~ 383 (722)
T PLN02844 315 CILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGW 383 (722)
T ss_pred EEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCc
Confidence 355667778888888876653 79987665 5789999999753 567899999984 445
Q ss_pred cHHH-hc----CCCC------CEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCC---
Q 002724 720 SQYL-DS----LSVG------SILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPE--- 785 (888)
Q Consensus 720 S~~L-~~----L~~G------d~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~--- 785 (888)
|+.| +. ++.| ..+.|+||+|.+... ....++++||||||||||++++++++++...
T Consensus 384 T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~----------~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~ 453 (722)
T PLN02844 384 TNSLYNKIQAELDSETNQMNCIPVAIEGPYGPASVD----------FLRYDSLLLVAGGIGITPFLSILKEIASQSSSRY 453 (722)
T ss_pred hHHHHHHHHhhccCCCCcccceEEEEECCccCCCCC----------ccCCCeEEEEEcCcCHHHHHHHHHHHHhcccccc
Confidence 6655 33 3345 378999999987543 1245899999999999999999999986421
Q ss_pred -CCceEEEEEecCCCchhhhHHHHHH-----HHHhCCCeEEEEEEeccccCCccccccccCHHHHH----hhCCCCCCCc
Q 002724 786 -DETEMYVVYANRTEDDILLREELDD-----WAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILR----EHVPEGSGDT 855 (888)
Q Consensus 786 -~~~~i~Li~~~Rt~~Dil~~dEL~~-----l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~----~~l~~~~~~~ 855 (888)
...++.|+|++|+.+|+.+.+++.. +.++ .+++++++++++..+. .|+++.+.. +.+.-..+.+
T Consensus 454 ~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~-~~lkl~iyVTRE~~~~-----~rl~~~i~~~~~~~~~~~~~~~~ 527 (722)
T PLN02844 454 RFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQ-LNLKLKVFVTQEEKPN-----ATLRELLNQFSQVQTVNFSTKCS 527 (722)
T ss_pred CCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHh-cCceEEEEECCCCCCC-----CchhhHhhccchhhhcCCCCCCC
Confidence 1368999999999999999998863 2222 3788888898762221 255542221 1111124567
Q ss_pred EEEEECChhhH
Q 002724 856 LALACGPPPMI 866 (888)
Q Consensus 856 ~vyvCGPp~mi 866 (888)
.+.+|||...+
T Consensus 528 ~~~i~G~~~~l 538 (722)
T PLN02844 528 RYAIHGLESFL 538 (722)
T ss_pred ceEEeCCCchH
Confidence 79999998643
No 99
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.59 E-value=1.7e-15 Score=176.86 Aligned_cols=99 Identities=34% Similarity=0.631 Sum_probs=80.9
Q ss_pred CCCCCccccccccCCCCCCCCCCCccCHHHHHhccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhh
Q 002724 504 GRSSDANQTLKKSVSSPFMNTTSNTYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI 583 (888)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~ 583 (888)
++++++.++...++. .......+.+|++|+++|+++++||++|+|+|||||+|+ .||||. +|+.++|+|||+.|+++
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~ 78 (485)
T PLN03199 2 GKGGDAAAAKGRSAA-LKLAEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF 78 (485)
T ss_pred CCCCCCCCCCCCccc-cccCccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh
Confidence 345555443332221 222334678999999999999999999999999999997 799997 88899999999999999
Q ss_pred chHHHHHhhhcCceeEeccCCC
Q 002724 584 HSDKAKKMLEDYRIGELITTGY 605 (888)
Q Consensus 584 Hs~~a~~~L~~~~IG~l~~~~~ 605 (888)
||..++++|++|+||+|.+.+.
T Consensus 79 H~~~~~~~l~~~~iG~l~~~~~ 100 (485)
T PLN03199 79 HAPGSQALMKKFYIGDLIPEST 100 (485)
T ss_pred cCHHHHHHHHhccccccccccc
Confidence 9999999999999999975544
No 100
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.57 E-value=1.2e-14 Score=170.93 Aligned_cols=184 Identities=22% Similarity=0.282 Sum_probs=127.8
Q ss_pred eeeeeeecccCCC-CCcEEEEEEEE--EeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCC
Q 002724 681 LCMRAYTPTSSVD-EVGHFDLVVKI--YFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKF 757 (888)
Q Consensus 681 ~~~R~YTp~S~~~-~~g~leL~IK~--y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~ 757 (888)
+.+|.|||+|++. ....+++++-+ |.. .......-|.+|+||.+|++|+.+..-.|.+.+ .|.++ .+.
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~-~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s------~frlp--~dp 490 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGT-PDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKS------MFRLP--SDP 490 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeecc-CCCCCccceehhhhHHhcCCccccCcceeeccc------ceecC--CCC
Confidence 8899999999765 34556655543 321 110011139999999999999998764555543 34454 346
Q ss_pred CceEEEEECCcCHHHHHHHHHHHHcCCC----CCceEEEEEecCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeccccCCc
Q 002724 758 AKKLAMLAGGTGITPIYQIMQAILKDPE----DETEMYVVYANRTED-DILLREELDDWAKKHDRVKVWYVVEKSIKEGW 832 (888)
Q Consensus 758 ~~~ivmIAGGTGITP~~~ll~~ll~~~~----~~~~i~Li~~~Rt~~-Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w 832 (888)
..++||||.|||||||+++++..+.... -..-++||||+|+.+ |.+|++|++++.+..-.+++...+|+.....-
T Consensus 491 ~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k 570 (645)
T KOG1158|consen 491 STPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKK 570 (645)
T ss_pred CCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCc
Confidence 6899999999999999999999876522 122289999999998 55999999999766678889999998621222
Q ss_pred cccccccC--HHHHHhhCCCCCCCcEEEEECChh-hHHHHHHHHHHh
Q 002724 833 QYSTGFIT--EAILREHVPEGSGDTLALACGPPP-MIQFAVQPNLEK 876 (888)
Q Consensus 833 ~~~~Grv~--~~~L~~~l~~~~~~~~vyvCGPp~-mi~~av~~~L~~ 876 (888)
.|.+-++. .+.|.+.+. .++..+||||+.. |.+ .|.++|.+
T Consensus 571 ~YVQd~l~e~~d~v~~~L~--~~~g~iYvCGd~~~Ma~-dV~~~L~~ 614 (645)
T KOG1158|consen 571 IYVQDRLREYADEVWELLK--KEGGHIYVCGDAKGMAK-DVQDALVR 614 (645)
T ss_pred eehhhHHHHHHHHHHHHHh--cCCcEEEEecCCccchH-HHHHHHHH
Confidence 22222222 122344443 3589999999999 986 88887754
No 101
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.56 E-value=2.5e-15 Score=175.92 Aligned_cols=77 Identities=36% Similarity=0.709 Sum_probs=73.5
Q ss_pred CCccCHHHHHhccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhhchHHHHHhhhcCceeEeccC
Q 002724 526 SNTYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITT 603 (888)
Q Consensus 526 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~Hs~~a~~~L~~~~IG~l~~~ 603 (888)
.+.+|++|+++|++.++|||+|+|+|||+|+|++.||||. .|+.++|+|||+.|+++|+..+.++|++|+||+|...
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~H~~~~~~~l~~~~IG~l~~~ 179 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSFHAASTWKILQDFYIGDVDNV 179 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHhcCHHHHHHHhhCcceecCCc
Confidence 6799999999999999999999999999999999999997 8999999999999999999999999999999999753
No 102
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.55 E-value=3.1e-14 Score=130.86 Aligned_cols=85 Identities=36% Similarity=0.699 Sum_probs=77.2
Q ss_pred eEEEEEEEEecCceeeeeeccCC--------CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCC
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPN 715 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~ 715 (888)
+++|++++.++++++.|+|+++. +|||+.+. ...|+|||++.+.+.+.++|+||.+ .
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~---------~ 71 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRY---------P 71 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEEC---------T
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCcccccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEec---------c
Confidence 58999999999999999999884 59998876 5689999999999899999999997 2
Q ss_pred CChhcHHHhcCCCCCEEEEEccccceee
Q 002724 716 GGLMSQYLDSLSVGSILDVKGPLGHIQY 743 (888)
Q Consensus 716 gG~~S~~L~~L~~Gd~V~IkGP~G~f~~ 743 (888)
+|.+|++|++|++||.|.|+||+|+|.|
T Consensus 72 ~G~~S~~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 72 NGRVSRYLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp TSHHHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred CCHHHHHHHhCCCCCEEEEEEcccccCC
Confidence 7999999999999999999999999987
No 103
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.55 E-value=4.1e-14 Score=157.65 Aligned_cols=176 Identities=23% Similarity=0.335 Sum_probs=127.1
Q ss_pred eeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceE
Q 002724 682 CMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKL 761 (888)
Q Consensus 682 ~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~i 761 (888)
.+|+|||+|.+... .++|+|-+.....--+-|..|.+|+||.+|++|++|.++---|++.+. .....++
T Consensus 367 rPR~fSIas~~~~~-~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~l~~p----------~~~~~Pl 435 (574)
T KOG1159|consen 367 RPRAFSIASSPGAH-HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPGTLYFP----------SDLNKPL 435 (574)
T ss_pred ccceeeeccCCCCC-ceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecCccccC----------CCCCCCe
Confidence 46999999998764 488877554433333456689999999999999999888777777665 3457899
Q ss_pred EEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCc-hhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccC
Q 002724 762 AMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTED-DILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFIT 840 (888)
Q Consensus 762 vmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~-Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~ 840 (888)
|||+-||||||+++++++..-. ...+..||||+|+.+ |++|.++..++.+.. .+...|+. .+.-.|.+.++.
T Consensus 436 ImVGPGTGvAPfRa~i~er~~q--~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRD-qe~kvYVQh~i~ 508 (574)
T KOG1159|consen 436 IMVGPGTGVAPFRALIQERIYQ--GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRD-QEQKVYVQHKIR 508 (574)
T ss_pred EEEcCCCCcccHHHHHHHHHhh--ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccc-cccceeHHHHHH
Confidence 9999999999999999987643 234558999999988 999998887776542 44456665 443344443332
Q ss_pred H--HHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHHhc
Q 002724 841 E--AILREHVPEGSGDTLALACGPPPMIQFAVQPNLEKM 877 (888)
Q Consensus 841 ~--~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~~~ 877 (888)
+ +.+.+.+. ..++.||+||+.+=|-.+|+.+|.++
T Consensus 509 e~g~~v~~Ll~--~~gA~~fvaGsS~~MP~~V~~al~eI 545 (574)
T KOG1159|consen 509 ENGEEVWDLLD--NLGAYFFVAGSSGKMPKDVKEALIEI 545 (574)
T ss_pred HhhHHHHHHHh--ccCCEEEEecCCCCCcHHHHHHHHHH
Confidence 2 12233343 46899999999953345888888653
No 104
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.44 E-value=7.2e-14 Score=137.34 Aligned_cols=108 Identities=28% Similarity=0.561 Sum_probs=87.2
Q ss_pred EEeCCCCCCCCCCCccccccccCCCCCccccccccCCCCCCCCCCCccCHHHHHhccCCCCceEEEcCEEeecccccccC
Q 002724 482 VFEHPTQPGNQSGGWMAKERHLGRSSDANQTLKKSVSSPFMNTTSNTYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDH 561 (888)
Q Consensus 482 ~f~hp~~~~~~~ggWm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~H 561 (888)
++-|=.-++...+-|+..... ..+. ...+..+.++.+|+.+|++.++|||+|+|+|||+|.|++.|
T Consensus 19 ~~~~~~~~d~~~~~~~~~~~~---~~di-----------~~~~~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~H 84 (164)
T COG5274 19 TNKLYAGKDHAALDWDSLVQE---HADI-----------LNDESPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEH 84 (164)
T ss_pred ceeeecCccHHHHhHHHhhcc---hhhh-----------ccCCccccccHHHHHHhcCccceEEEEcCEEEEhhhccccC
Confidence 666666666666667665432 0011 11114577999999999999999999999999999999999
Q ss_pred CCcchhhhhccCCCccHHHHhh-chHHHHHhhhcCceeEeccC
Q 002724 562 PGGTDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELITT 603 (888)
Q Consensus 562 PGG~~~i~~~aG~D~T~~F~~~-Hs~~a~~~L~~~~IG~l~~~ 603 (888)
|||..+|+.++|+|+|..|... |+..+.++|+.++|+.+...
T Consensus 85 PGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 85 PGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred CCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 9999999999999999999987 78888999999999998643
No 105
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.1e-11 Score=149.28 Aligned_cols=216 Identities=19% Similarity=0.279 Sum_probs=148.8
Q ss_pred eeeEEEEEEEEecCceeeeeeccCC-----CCceEeee------eeeeeeecccCCCCCcEEEEEEEEEeecCCCCCCCC
Q 002724 648 KIPCKLVEKILISHDVRLFRFALPQ-----EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPNG 716 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~f~f~lp~-----pGQ~l~Lp------~~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~g 716 (888)
...+++++...+..|+..+++..|. +|||+.+. .+.+||||+|++ +++++.+.||. .
T Consensus 354 ~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp-~dd~lsvhIk~-----------~ 421 (646)
T KOG0039|consen 354 QKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAP-EDDFLSVHIKA-----------L 421 (646)
T ss_pred hcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECccccccccCCceeecCC-CCCEEEEEEEe-----------c
Confidence 4458999999999999999999974 69986554 889999999999 67899999998 3
Q ss_pred ChhcHHH-hcCCC------------CCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcC
Q 002724 717 GLMSQYL-DSLSV------------GSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKD 783 (888)
Q Consensus 717 G~~S~~L-~~L~~------------Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~ 783 (888)
|..|+.| +.+.. .-.+.|.||+|...-. -...+.++|||||+|+||+.++++.++.+
T Consensus 422 g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d----------~~~~e~~vLV~~GiGvtPf~sil~~l~~~ 491 (646)
T KOG0039|consen 422 GDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQD----------VFKYEVLVLVGGGIGVTPFASILKDLLNK 491 (646)
T ss_pred CcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchh----------hhhcceEEEEccCcccCccHHHHHHHHhh
Confidence 8889888 33331 4479999999986522 35677899999999999999999999865
Q ss_pred CC---------------CCceEEEEEecCCCchh-hhHHHHHHHHHhC--CCeEEEEEEeccccCCc-------------
Q 002724 784 PE---------------DETEMYVVYANRTEDDI-LLREELDDWAKKH--DRVKVWYVVEKSIKEGW------------- 832 (888)
Q Consensus 784 ~~---------------~~~~i~Li~~~Rt~~Di-l~~dEL~~l~~~~--~~f~v~~~~s~~~~~~w------------- 832 (888)
.. ...++.++|.+|...++ .+.+.+.++.... +-..++...++.....+
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~~~ 571 (646)
T KOG0039|consen 492 ISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQKLL 571 (646)
T ss_pred ccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHhhc
Confidence 21 23468899998887766 4455565555332 22444444432111100
Q ss_pred --------------cccccccCHH-HHHhhCCCC-CCCcEEEEECChhhHHHHHHHHHHhcCCCCCCCEE
Q 002724 833 --------------QYSTGFITEA-ILREHVPEG-SGDTLALACGPPPMIQFAVQPNLEKMNYDTKDSLL 886 (888)
Q Consensus 833 --------------~~~~Grv~~~-~L~~~l~~~-~~~~~vyvCGPp~mi~~av~~~L~~~Gv~~~~~I~ 886 (888)
...-||.+-. .+++..... .....|+.|||++|++ .+++.+.+.......+++
T Consensus 572 ~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~-~~~~~~~~~~~~~~~~~~ 640 (646)
T KOG0039|consen 572 HAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVK-ELRKLCNDFSSSTATRFE 640 (646)
T ss_pred ccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHH-HHHHHHHhcccccCceee
Confidence 0112444432 233322211 1127999999999997 899998886553233433
No 106
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.25 E-value=2e-11 Score=114.90 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=102.1
Q ss_pred EEEEEeccCCceeecHHHHhhhCCCeEEEEEEEeecCCcccccccccccCcccCCCcccceEEEccchHHHHHHcCCCcC
Q 002724 145 TIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSR 224 (888)
Q Consensus 145 ~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~C~gn~r~~~~~~~~~~G~~Wg~~~i~~a~w~Gv~L~dlL~~ag~~~~ 224 (888)
-|+|.-.-..+..||++|| ..+|..++++.+- |.. ||++|+||+|++||+..|.+
T Consensus 25 ilTiq~ad~~~~~ft~qeL-eal~~~T~ete~P-------------------w~~---gn~rf~Gvsls~Ll~~l~ak-- 79 (155)
T COG3915 25 ILTIQIADGPTVSFTLQEL-EALPDETIETETP-------------------WTQ---GNTRFKGVSLSALLAWLGAK-- 79 (155)
T ss_pred eEEEEecCCCceeecHHHH-hcCCcceEEEecC-------------------ccc---CceeecceeHHHHHHHhhcc--
Confidence 3666632344567999999 6799999988653 544 35899999999999999976
Q ss_pred CCCeeEEEEEecCCCCCCCCCCccEeEEcccccCcCCCeEEeeccCCccCCCCCCCcEEEEcc---------Cccccccc
Q 002724 225 KSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIP---------GCIGGRMV 295 (888)
Q Consensus 225 ~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~mNGepL~~~hG~PlRlvvP---------g~~G~r~v 295 (888)
.+.|.|.+.. +|...||+++.-.. +.||||.+||.++...|-+|+.+|.| ..|-.|+|
T Consensus 80 ---~tslt~iALN--------dY~a~Ip~sDi~ky--npIlA~~~nGn~M~IRerGPl~~IYplds~peL~nqvyysr~v 146 (155)
T COG3915 80 ---QTSLTVIALN--------DYWAEIPYSDIEKY--NPILAIQNNGNYMQIRERGPLWSIYPLDSSPELDNQVYYSRMV 146 (155)
T ss_pred ---CcceEEEEec--------ceeccCcHHHhhhc--ccEEEEEeCCcEEEEeccCceEEEeecCCChhhhhhhhhhhhe
Confidence 3568888888 79999999999877 89999999999999999999999999 46788999
Q ss_pred cceeEEEE
Q 002724 296 KWLKRIIV 303 (888)
Q Consensus 296 KWl~~I~v 303 (888)
..+++|++
T Consensus 147 WQissi~i 154 (155)
T COG3915 147 WQISSIEI 154 (155)
T ss_pred eeeeeEEe
Confidence 99999987
No 107
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.23 E-value=1.9e-10 Score=140.94 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=97.2
Q ss_pred CeeeEEEEEEEEecCceeeeeeccCC------CCceEeeee---------eeeeeecccCCCCCcEEEEEEEEEeecCCC
Q 002724 647 EKIPCKLVEKILISHDVRLFRFALPQ------EDQVLGLPL---------CMRAYTPTSSVDEVGHFDLVVKIYFKGVHP 711 (888)
Q Consensus 647 ~~~~~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp~---------~~R~YTp~S~~~~~g~leL~IK~y~~~~~~ 711 (888)
....++|++++.++++++.++|..|. ||||+.|.. ..||+|+++.+.+.+.++|+|++.
T Consensus 789 ~~l~~~Vv~~~~lap~i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvV------ 862 (1028)
T PRK06567 789 YLLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEV------ 862 (1028)
T ss_pred hhhceEEEEEEEecCCEEEEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEE------
Confidence 35678999999999999999998874 899988861 346899999888889999999996
Q ss_pred CCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHHHHHHHHHHHHcCCCCCceEE
Q 002724 712 KFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKDPEDETEMY 791 (888)
Q Consensus 712 ~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~ 791 (888)
|..|..|..+++||.|.|.||+|+- |.++ ..+++++||||+||+| +++++.+. ..++.
T Consensus 863 -----GkgT~~Ls~l~~Gd~v~v~GPLG~p-------F~i~----~~k~vLLVgGGVGiAp---Lak~Lk~~---G~~V~ 920 (1028)
T PRK06567 863 -----GKSTSLCKTLSENEKVVLMGPTGSP-------LEIP----QNKKIVIVDFEVGNIG---LLKVLKEN---NNEVI 920 (1028)
T ss_pred -----ChHHHHHhcCCCCCEEEEEcccCCC-------CCCC----CCCeEEEEEccccHHH---HHHHHHHC---CCeEE
Confidence 9999999999999999999999963 2222 2468999999999997 44665433 44554
Q ss_pred EEE
Q 002724 792 VVY 794 (888)
Q Consensus 792 Li~ 794 (888)
.|.
T Consensus 921 ~~~ 923 (1028)
T PRK06567 921 FVT 923 (1028)
T ss_pred EEE
Confidence 444
No 108
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.18 E-value=8e-12 Score=138.46 Aligned_cols=83 Identities=36% Similarity=0.631 Sum_probs=76.3
Q ss_pred CCccCHHHHHhccCCCCceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhhchHH--HHHhhhcCceeEeccC
Q 002724 526 SNTYSLSEVAKHNSADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDK--AKKMLEDYRIGELITT 603 (888)
Q Consensus 526 ~~~~t~~ev~~h~~~~~~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~Hs~~--a~~~L~~~~IG~l~~~ 603 (888)
.+++|+|++++|++.++.|++|+| |||+|+|++.||||...|..++|+|||+.|.++|... |.+.|+...+|...+.
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~~l~~l~~~~~~pe 85 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYKHLKPLLIGELSPE 85 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHHHHHHHHcCCcCcc
Confidence 458999999999999999999999 9999999999999999999999999999999999665 8899999999999887
Q ss_pred CCCCCC
Q 002724 604 GYTSDS 609 (888)
Q Consensus 604 ~~~~~~ 609 (888)
.+.++.
T Consensus 86 ~~~~~~ 91 (430)
T KOG4232|consen 86 IPSLDL 91 (430)
T ss_pred cccccc
Confidence 766553
No 109
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=99.15 E-value=8.9e-11 Score=116.54 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=74.2
Q ss_pred ceEEEEECCcCHHHHHHHHHHHHcCC----CCCceEEEEEecCCCchh-hhHHHHHHHHHhC--CCeEEEEEEeccccCC
Q 002724 759 KKLAMLAGGTGITPIYQIMQAILKDP----EDETEMYVVYANRTEDDI-LLREELDDWAKKH--DRVKVWYVVEKSIKEG 831 (888)
Q Consensus 759 ~~ivmIAGGTGITP~~~ll~~ll~~~----~~~~~i~Li~~~Rt~~Di-l~~dEL~~l~~~~--~~f~v~~~~s~~~~~~ 831 (888)
++++|||||+||||+++++++++... ....+|+|+|..|+.+++ .+.++|+++.... .++++..++++.....
T Consensus 2 ~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~ 81 (156)
T PF08030_consen 2 DNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAP 81 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-----
T ss_pred CEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcccc
Confidence 58999999999999999999997652 246789999999999988 5666666555443 4788888887541110
Q ss_pred ------------------------------ccccccccCH-HHHHhh-CCCCCCCcEEEEECChhhHHHHHHHHH
Q 002724 832 ------------------------------WQYSTGFITE-AILREH-VPEGSGDTLALACGPPPMIQFAVQPNL 874 (888)
Q Consensus 832 ------------------------------w~~~~Grv~~-~~L~~~-l~~~~~~~~vyvCGPp~mi~~av~~~L 874 (888)
.....||.+- +++++. .........|++|||++|++ .++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~gRP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~-~vr~~v 155 (156)
T PF08030_consen 82 SNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYGRPDLDEILSEVASQQSSGRVAVFVCGPPSMVD-DVRNAV 155 (156)
T ss_dssp --------------------------------EEES---HHHHHHHHHHHSTT-EEEEEEES-HHHHH-HHHHHH
T ss_pred cchhhhhcccccccccccccCCcccCCCcccceecCCCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHH-HHHHHh
Confidence 1223456553 344444 22235678999999999997 887653
No 110
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=98.94 E-value=4e-08 Score=105.00 Aligned_cols=199 Identities=19% Similarity=0.284 Sum_probs=147.5
Q ss_pred CeeeEEEEEEEEecCceeeeeeccCC---------CCceEee--e------------------------eeeeeeecccC
Q 002724 647 EKIPCKLVEKILISHDVRLFRFALPQ---------EDQVLGL--P------------------------LCMRAYTPTSS 691 (888)
Q Consensus 647 ~~~~~~Lv~k~~ls~dv~~f~f~lp~---------pGQ~l~L--p------------------------~~~R~YTp~S~ 691 (888)
+.+.++|+.++++|+.+++|+|..+. .+|++.| | ..+|.|||.+.
T Consensus 16 ~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~ 95 (265)
T COG2375 16 RLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAV 95 (265)
T ss_pred cceEEEEEEEEecCCCeEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeee
Confidence 46789999999999999999998876 2334433 2 34899999988
Q ss_pred CCCCcEEEEEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccceeecCCCceeecCCCCCCceEEEEECCcCHH
Q 002724 692 VDEVGHFDLVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGIT 771 (888)
Q Consensus 692 ~~~~g~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f~~~g~g~f~l~~~~~~~~~ivmIAGGTGIT 771 (888)
+.+.++|++-+-. |. .+|..|.|....++||+|.|.||.|.+... ...+.++||+.=|++-
T Consensus 96 d~~~~e~~vDfVl-----H~---~~gpas~WA~~a~~GD~l~i~GP~g~~~p~-----------~~~~~~lLigDetAlP 156 (265)
T COG2375 96 DAAAGELDVDFVL-----HG---EGGPASRWARTAQPGDTLTIMGPRGSLVPP-----------EAADWYLLIGDETALP 156 (265)
T ss_pred cccccEEEEEEEE-----cC---CCCcchhhHhhCCCCCEEEEeCCCCCCCCC-----------CCcceEEEeccccchH
Confidence 7777887777765 32 279999999999999999999999985433 5678999999999999
Q ss_pred HHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccccCHHHHHhhCCC-
Q 002724 772 PIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPE- 850 (888)
Q Consensus 772 P~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~- 850 (888)
.|..+|+.+-. ..+...+....+..|. .+| . ..+.+++..+.... .-+..++...+.+
T Consensus 157 AIa~iLE~lp~----~~~~~a~lev~d~ad~---~~l---~-~~~~l~~~Wl~r~~----------~~~~~ll~~a~~~~ 215 (265)
T COG2375 157 AIARILETLPA----DTPAEAFLEVDDAADR---DEL---P-SPDDLELEWLARDD----------APTEQLLAAALAQA 215 (265)
T ss_pred HHHHHHHhCCC----CCceEEEEEeCChHHh---hcc---C-CCCceeEEEecCCC----------ccchHHHHHHHhcc
Confidence 99999998733 4566777777777765 222 1 12566776655322 1133344444322
Q ss_pred --CCCCcEEEEECChhhHHHHHHHHHHh-cCCCCCCCEEE
Q 002724 851 --GSGDTLALACGPPPMIQFAVQPNLEK-MNYDTKDSLLV 887 (888)
Q Consensus 851 --~~~~~~vyvCGPp~mi~~av~~~L~~-~Gv~~~~~I~~ 887 (888)
+.+...++|.|-..+++ ++++.|+. .|++ +++|.+
T Consensus 216 ~~P~~~~~vwiagE~~~v~-~~Rk~L~~e~g~d-k~~i~a 253 (265)
T COG2375 216 ALPAGDYYVWIAGEASAVK-AIRKFLRNERGFD-KSRVRA 253 (265)
T ss_pred cCCCCceEEEEeccHHHHH-HHHHHHhhhcCCC-HHHhhh
Confidence 24458999999999997 99999976 4999 877654
No 111
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=98.91 E-value=6.4e-10 Score=104.53 Aligned_cols=78 Identities=38% Similarity=0.720 Sum_probs=66.4
Q ss_pred CCCccCHHHHHhccCCCC-ceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhh---chH-HHHHhhhcCceeE
Q 002724 525 TSNTYSLSEVAKHNSADS-AWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI---HSD-KAKKMLEDYRIGE 599 (888)
Q Consensus 525 ~~~~~t~~ev~~h~~~~~-~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~---Hs~-~a~~~L~~~~IG~ 599 (888)
....++.|||++|++.++ -||.+...|||||+|++.|||| +.|+.+||. +-+.|.++ |.. ....+|+.|+||+
T Consensus 78 ~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGG-dKillAAG~-a~dPFWalY~qHnt~eVlElLegyrIG~ 155 (167)
T KOG4576|consen 78 SLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGG-DKILLAAGG-ALDPFWALYAQHNTSEVLELLEGYRIGE 155 (167)
T ss_pred hccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCc-ceeeeecCC-CcCcHHHHHHHhhHHHHHHHHhhccccc
Confidence 378999999999998765 7999999999999999999999 778888887 56677776 533 5688999999999
Q ss_pred eccCC
Q 002724 600 LITTG 604 (888)
Q Consensus 600 l~~~~ 604 (888)
|.+.+
T Consensus 156 L~~~d 160 (167)
T KOG4576|consen 156 LNPED 160 (167)
T ss_pred CChhh
Confidence 97544
No 112
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.07 E-value=6.3e-06 Score=69.50 Aligned_cols=74 Identities=30% Similarity=0.476 Sum_probs=55.6
Q ss_pred CccCHHHHHhccCCCC-ceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHHhhchHHHHHhhhcC-ceeEecc
Q 002724 527 NTYSLSEVAKHNSADS-AWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDY-RIGELIT 602 (888)
Q Consensus 527 ~~~t~~ev~~h~~~~~-~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~~~Hs~~a~~~L~~~-~IG~l~~ 602 (888)
+.||+|||.+.|.++. .+|.++|.||||+.-..+- +|...-++-||+|.|++|+..|..- ..+|+.| .||.|..
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s~~W~-dGtHqglhsaG~DLs~~~~~~aphg-~eil~~~PvVG~L~k 77 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLSPSWG-DGTHQGLHSAGKDLSSEFNSCAPHG-MEILTSLPVVGALIK 77 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccCcccC-CCccccccccchhHHHHHhhcCCch-hHHHhcCchhheeec
Confidence 6799999999998765 7999999999998643222 3445556679999999999664332 2367776 7888864
No 113
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=97.78 E-value=8e-05 Score=71.14 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=56.0
Q ss_pred EEEEEEEecCceeeeeeccCC--------CCceEeee---------------------------eeeeeeecccCCCCCc
Q 002724 652 KLVEKILISHDVRLFRFALPQ--------EDQVLGLP---------------------------LCMRAYTPTSSVDEVG 696 (888)
Q Consensus 652 ~Lv~k~~ls~dv~~f~f~lp~--------pGQ~l~Lp---------------------------~~~R~YTp~S~~~~~g 696 (888)
+|++++.+|+++++++|..+. ++|++.|- ...|.||+.+.+.+.+
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~ 80 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETG 80 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EEETT--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCC
Confidence 588999999999999998765 56765542 1689999999888888
Q ss_pred EEEEEEEEEeecCCCCCCCCChhcHHHhcCCCCCEEEEEccccce
Q 002724 697 HFDLVVKIYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHI 741 (888)
Q Consensus 697 ~leL~IK~y~~~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~f 741 (888)
+|+|-+-.. . ..|..|.|..+.++||.|.|.||.|+|
T Consensus 81 ~l~iDfv~H-----g---~~Gpas~WA~~A~pGd~v~v~gP~g~~ 117 (117)
T PF08021_consen 81 ELDIDFVLH-----G---DEGPASRWARSARPGDRVGVTGPRGSF 117 (117)
T ss_dssp EEEEEEE-------S---S--HHHHHHHH--TT-EEEEEEEE---
T ss_pred EEEEEEEEC-----C---CCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence 888877763 1 138999999999999999999999986
No 114
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=97.38 E-value=2.6e-05 Score=72.98 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=6.4
Q ss_pred eEEEEEEEEecCceeeeeeccCC------CCceEeee------e--eeeeeecccCCCCCcEEEEEEEEEeecCCCCCCC
Q 002724 650 PCKLVEKILISHDVRLFRFALPQ------EDQVLGLP------L--CMRAYTPTSSVDEVGHFDLVVKIYFKGVHPKFPN 715 (888)
Q Consensus 650 ~~~Lv~k~~ls~dv~~f~f~lp~------pGQ~l~Lp------~--~~R~YTp~S~~~~~g~leL~IK~y~~~~~~~~P~ 715 (888)
.+++.+++.+..++.++++..+. ||||+.|. . ..+||||+|.+. .+.+.|+||.+
T Consensus 3 ~~~~~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~-~~~i~l~ik~~---------- 71 (105)
T PF08022_consen 3 NVRIASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE-DNSITLIIKAR---------- 71 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC-CCEEEEEEEeC----------
Confidence 35677888888999999998876 79986664 3 789999999887 67999999985
Q ss_pred CChhcHHHh-cC-------CCCCEEEEEccccc
Q 002724 716 GGLMSQYLD-SL-------SVGSILDVKGPLGH 740 (888)
Q Consensus 716 gG~~S~~L~-~L-------~~Gd~V~IkGP~G~ 740 (888)
|.+|+.|. .+ ..+-.+.|.||+|.
T Consensus 72 -g~~T~~L~~~~~~~~~~~~~~~~v~idGPYG~ 103 (105)
T PF08022_consen 72 -GGWTKRLYEHLSESPSKQGNRLRVFIDGPYGA 103 (105)
T ss_dssp --------------------------TTSTTSH
T ss_pred -CCchHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence 77888883 32 23447888999996
No 115
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=96.99 E-value=0.0029 Score=63.71 Aligned_cols=78 Identities=27% Similarity=0.517 Sum_probs=56.2
Q ss_pred CCCccCHHHHHhccCCC-C--ceEEEcCEEeecccccc-cCCCcchhhhhccCCCccHHHHhh----------chHH---
Q 002724 525 TSNTYSLSEVAKHNSAD-S--AWIIVHGHIYDCTRFLK-DHPGGTDSILINAGTDCTEEFDAI----------HSDK--- 587 (888)
Q Consensus 525 ~~~~~t~~ev~~h~~~~-~--~wvii~g~VYDvT~fl~-~HPGG~~~i~~~aG~D~T~~F~~~----------Hs~~--- 587 (888)
..+.||.+||++.+..+ + -.+.|+|+|||||.=.. +-|||. --.+||+|||..+... +|+.
T Consensus 54 ~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~Gp--Y~~fAG~DASR~La~~s~d~~d~~ddlsdL~a~ 131 (183)
T KOG1110|consen 54 KVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGP--YSLFAGKDASRGLAKMSFDLSDETDDLSDLTAE 131 (183)
T ss_pred cccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCC--chhhcccchHHHHHhcccchhhccccccccCHH
Confidence 34589999999998766 3 58889999999985321 789995 4678999999876332 2221
Q ss_pred ---H-----HHhhhcC-ceeEeccCC
Q 002724 588 ---A-----KKMLEDY-RIGELITTG 604 (888)
Q Consensus 588 ---a-----~~~L~~~-~IG~l~~~~ 604 (888)
| .++..+| +||+|....
T Consensus 132 e~eal~eWE~~fk~KY~~VG~L~~~~ 157 (183)
T KOG1110|consen 132 ELEALNEWETKFKAKYPVVGRLVKKG 157 (183)
T ss_pred HHHHHHHHHHHHhhcCceeEEeecCC
Confidence 1 2355567 899998653
No 116
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=93.78 E-value=0.042 Score=31.35 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=8.7
Q ss_pred EEeCCCCCceE
Q 002724 390 VTLDGGDTWHV 400 (888)
Q Consensus 390 vS~DgG~tW~~ 400 (888)
.|.|+|+||+.
T Consensus 2 ~S~D~G~TW~~ 12 (12)
T PF02012_consen 2 YSTDGGKTWKK 12 (12)
T ss_dssp EESSTTSS-EE
T ss_pred EeCCCcccCcC
Confidence 69999999974
No 117
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=93.66 E-value=0.39 Score=45.91 Aligned_cols=110 Identities=18% Similarity=0.255 Sum_probs=67.8
Q ss_pred ceEEEEECCcCHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEEEeccccCCccccccc
Q 002724 759 KKLAMLAGGTGITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYVVEKSIKEGWQYSTGF 838 (888)
Q Consensus 759 ~~ivmIAGGTGITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~~s~~~~~~w~~~~Gr 838 (888)
+.++|+|.-|++-.+..+|+++ ....+++++.-..+.+|... |.. ..+++++.+.... . ...+.
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~l----p~~~~~~v~iev~~~~d~~~---l~~----~~~~~v~wv~r~~-~----~~~~~ 65 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEAL----PADAPGTVFIEVPDEADRQP---LPA----PAGVEVTWVPRDG-P----AAQGS 65 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-----TT-EEEEEEEESSGGG--------------TEEEEEEEE-SS-------TT-H
T ss_pred ceEEEEeccccHHHHHHHHHhC----CCCCeEEEEEEECChHhccc---CCC----CCCCEEEEEeCCC-C----CchHH
Confidence 5789999999999999999997 34678888888888877443 222 3577887776543 1 11111
Q ss_pred cCHHHHHhhCCCCCCCcEEEEECChhhHHHHHHHHHH-hcCCCCCCCEEE
Q 002724 839 ITEAILREHVPEGSGDTLALACGPPPMIQFAVQPNLE-KMNYDTKDSLLV 887 (888)
Q Consensus 839 v~~~~L~~~l~~~~~~~~vyvCGPp~mi~~av~~~L~-~~Gv~~~~~I~~ 887 (888)
.-.+.++... .+..+..++++|-..+++ .++..|+ +.|++ +++|++
T Consensus 66 ~l~~al~~~~-~~~~~~~vW~AgE~~~~r-~lR~~l~~~~g~~-~~~~~~ 112 (119)
T PF04954_consen 66 ALADALRDLP-LPAGDGYVWVAGEASAVR-ALRRHLREERGLP-RDRIYA 112 (119)
T ss_dssp HHHHHHTTS----SS-EEEEEEEEHHHHH-HHHHHHHHH-----GGGEEE
T ss_pred HHHHHHHHhh-ccCCCeEEEEEecHHHHH-HHHHHHHHhhCCC-HHHeEE
Confidence 1111223222 235689999999999997 9999997 77999 888875
No 118
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=93.00 E-value=0.083 Score=55.11 Aligned_cols=55 Identities=27% Similarity=0.416 Sum_probs=44.6
Q ss_pred CCccCHHHHHhccCCCC---ceEEEcCEEeecccccccCCCcchhhhhccCCCccHHHH
Q 002724 526 SNTYSLSEVAKHNSADS---AWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFD 581 (888)
Q Consensus 526 ~~~~t~~ev~~h~~~~~---~wvii~g~VYDvT~fl~~HPGG~~~i~~~aG~D~T~~F~ 581 (888)
...||.+||.+.|..++ .++.|=|.||||+.= +.|=|---.-.++||+|||..|-
T Consensus 59 k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~g-k~hYgsG~sYnhFaGRDASrAFv 116 (281)
T KOG1108|consen 59 KILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRG-KKHYGSGCSYNHFAGRDASRAFV 116 (281)
T ss_pred ceeeCHHHHhhccCCCCCCceeeeeeceeeeccCC-eeeeCCCCCcccccccccchhee
Confidence 45899999999987655 588899999999974 35555445689999999999984
No 119
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=86.64 E-value=5.8 Score=36.11 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=56.0
Q ss_pred EEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCcccceEeeEEEEeeec
Q 002724 350 VITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGKYWCWCFWSLELEVLD 429 (888)
Q Consensus 350 ~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~ 429 (888)
.|..|..|+.+. .+++|+|.|-.-.| -.+++|.-+.|+.=.+....-... ..+|-.|+..+.+++
T Consensus 4 ~V~~P~pg~~V~-------sp~~V~G~A~~FEg--tv~~rv~D~~g~vl~e~~~~a~~g------~~~~g~F~~tv~~~~ 68 (88)
T PF10648_consen 4 WVTAPAPGDTVS-------SPVKVSGKARVFEG--TVNIRVRDGHGEVLAEGFVTATGG------APSWGPFEGTVSFPP 68 (88)
T ss_pred EEcCCCCcCCcC-------CCEEEEEEEEEeee--EEEEEEEcCCCcEEEEeeEEeccC------CCcccceEEEEEeCC
Confidence 488999999886 58999999987744 777888777776431221211111 128999999998875
Q ss_pred C-CCceEEEEEEEcCCC
Q 002724 430 L-LGAKDIAVRAWDETL 445 (888)
Q Consensus 430 ~-~g~~~i~vRA~D~~g 445 (888)
. .+.+.|.|...|..+
T Consensus 69 ~~~~~g~l~v~~~s~~d 85 (88)
T PF10648_consen 69 PPPGKGTLEVFEDSAKD 85 (88)
T ss_pred CCCCceEEEEEEeCCCC
Confidence 4 677888888776543
No 120
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=85.60 E-value=0.89 Score=37.35 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=23.5
Q ss_pred eEEEEeeecCCCceEEEEEEEcCCCCCCCC
Q 002724 421 WSLELEVLDLLGAKDIAVRAWDETLNTQPE 450 (888)
Q Consensus 421 W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~ 450 (888)
|++.++.. ..|.|.|.++|+|.+||+-..
T Consensus 14 Ws~t~~~~-~dG~y~itv~a~D~AGN~s~~ 42 (54)
T PF13754_consen 14 WSFTVPAL-ADGTYTITVTATDAAGNTSTS 42 (54)
T ss_pred EEEeCCCC-CCccEEEEEEEEeCCCCCCCc
Confidence 45566654 589999999999999999765
No 121
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=85.44 E-value=5.9 Score=38.83 Aligned_cols=86 Identities=10% Similarity=0.055 Sum_probs=60.8
Q ss_pred eCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEe--------CC------CCCceEeeec-CCCCCCCCCcccc
Q 002724 353 TPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTL--------DG------GDTWHVCTLD-HPEQPNKYGKYWC 417 (888)
Q Consensus 353 ~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~--------Dg------G~tW~~a~l~-~~~~~~~~~~~w~ 417 (888)
.|..++++.++ ..+.++.-.-+. ..|..++|.+ .+ .+.|..-..- .+. |+.=.
T Consensus 25 ~p~~~~~~~~G-----~~ihfe~~i~d~--~~i~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~-----g~~~~ 92 (132)
T PF15418_consen 25 FPENCKVATRG-----DDIHFEADISDN--SAIKSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYG-----GKKNY 92 (132)
T ss_pred CCCCCeEEecC-----CcEEEEEEEEcc--cceeEEEEEEecCcCcccccccccccccCcEEEEEEcccC-----CcccE
Confidence 67888777765 679999777664 5799999988 33 4568766543 111 11112
Q ss_pred eEeeEEEEeeecCCCceEEEEEEEcCCCCCCCC
Q 002724 418 WCFWSLELEVLDLLGAKDIAVRAWDETLNTQPE 450 (888)
Q Consensus 418 W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~ 450 (888)
=..+++++|....+|.|.+++|.+|+.||++=.
T Consensus 93 ~~h~~i~IPa~a~~G~YH~~i~VtD~~Gn~~~~ 125 (132)
T PF15418_consen 93 DFHEHIDIPADAPAGDYHFMITVTDAAGNQTEE 125 (132)
T ss_pred eEEEeeeCCCCCCCcceEEEEEEEECCCCEEEE
Confidence 345788888777789999999999999998743
No 122
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=63.29 E-value=6.5 Score=33.04 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=21.9
Q ss_pred eEEEEeeecCCCceEEEEEEEcCCCCCC
Q 002724 421 WSLELEVLDLLGAKDIAVRAWDETLNTQ 448 (888)
Q Consensus 421 W~~~~~~~~~~g~~~i~vRA~D~~g~~Q 448 (888)
|...++-.+..|.|.|.++++|.+||.-
T Consensus 12 ~~~~~P~~~~dg~yt~~v~a~D~AGN~~ 39 (60)
T PF12245_consen 12 WSTVIPENDADGEYTLTVTATDKAGNTS 39 (60)
T ss_pred eeccccCccCCccEEEEEEEEECCCCEE
Confidence 4555555445799999999999999963
No 123
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=58.99 E-value=58 Score=32.53 Aligned_cols=80 Identities=20% Similarity=0.419 Sum_probs=49.8
Q ss_pred eEeeecCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCccccccccccceEEEEEEEeecCCCc
Q 002724 399 HVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKANVCKAHKGE 478 (888)
Q Consensus 399 ~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nn~~~~v~~~v~~~~~~~ 478 (888)
..|.|..|.-+..-+ .-|-.||-...-. ..|. |.|...+. +.+....+|+..|-..+.|.++.|.+.. ..+.
T Consensus 61 ~~A~L~SP~~~~~~~-~~cl~F~Y~m~G~--~~g~--L~V~~~~~--~~~~~~~lw~~~g~~~~~W~~~~v~l~~-~~~~ 132 (161)
T smart00137 61 QTARLLSPPLYENRS-THCLTFWYYMYGS--GSGT--LNVYVREN--NGSQDTLLWSRSGTQGGQWLQAEVALSK-WQQP 132 (161)
T ss_pred CEEEEECCcccCCCC-CeEEEEEEEecCC--CCCE--EEEEEEeC--CCCCceEeEEEcCCCCCceEEEEEEecC-CCCc
Confidence 468887664322111 2377777665432 2444 55544443 2233346899999999999999999864 3455
Q ss_pred eeEEEeCC
Q 002724 479 IGIVFEHP 486 (888)
Q Consensus 479 ~~~~f~hp 486 (888)
..|+||-=
T Consensus 133 fqi~fe~~ 140 (161)
T smart00137 133 FQVVFEGT 140 (161)
T ss_pred EEEEEEEE
Confidence 77888843
No 124
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=58.30 E-value=9.4 Score=40.36 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=22.0
Q ss_pred eeeeeeecccCCC-CCcEEEEEEEEEee-cCCCCCCCCChhcHH
Q 002724 681 LCMRAYTPTSSVD-EVGHFDLVVKIYFK-GVHPKFPNGGLMSQY 722 (888)
Q Consensus 681 ~~~R~YTp~S~~~-~~g~leL~IK~y~~-~~~~~~P~gG~~S~~ 722 (888)
..+|.|||+|++. ..+.++|+|.+... ..+.+ ...|.+|+|
T Consensus 177 l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~-~r~G~cS~y 219 (219)
T PF00667_consen 177 LQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGR-IRRGVCSSY 219 (219)
T ss_dssp ---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSS-EEE-HHHHH
T ss_pred CCCcceeecccccCCCCEEEEEEEEEEEecCCCC-eeEeeCCCC
Confidence 7789999999875 46789999987654 21111 123666654
No 125
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=57.41 E-value=11 Score=29.36 Aligned_cols=34 Identities=18% Similarity=0.486 Sum_probs=26.5
Q ss_pred CCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeee
Q 002724 368 QRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTL 403 (888)
Q Consensus 368 ~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l 403 (888)
+..++|++|-.+++..+|.++++ ++|.+|..+++
T Consensus 10 ~d~iti~~~f~~~~~~~Ie~i~F--aDGt~w~~~~I 43 (43)
T PF06594_consen 10 GDSITIKNWFSSDGSYRIEQIEF--ADGTVWTRAQI 43 (43)
T ss_pred CcEEEEeeeECccCCCcEeEEEE--cCCCEecHHHC
Confidence 46789999887765778998775 67999987654
No 126
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=52.09 E-value=93 Score=29.25 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=41.4
Q ss_pred CCCcEEEEEEEEeCCCceeEEEEEEeCC--CCCceEeeecCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCC
Q 002724 367 AQRPYTLRGYAYSGGGKKVTRVEVTLDG--GDTWHVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDET 444 (888)
Q Consensus 367 ~~~~~~i~G~A~sggg~~i~rVevS~Dg--G~tW~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~ 444 (888)
..+.|+|+ +.|+.++.. .+++|.+|+ |+.-....+..... + -.|.-=+..+.+ ..|.++|.++.....
T Consensus 43 ~~g~y~~~-~~~a~~~~~-~~~~l~id~~~g~~~~~~~~~~tg~---w---~~~~~~~~~v~l--~~G~h~i~l~~~~~~ 112 (125)
T PF03422_consen 43 EAGTYTLT-IRYANGGGG-GTIELRIDGPDGTLIGTVSLPPTGG---W---DTWQTVSVSVKL--PAGKHTIYLVFNGGD 112 (125)
T ss_dssp SSEEEEEE-EEEEESSSS-EEEEEEETTTTSEEEEEEEEE-ESS---T---TEEEEEEEEEEE--ESEEEEEEEEESSSS
T ss_pred CCceEEEE-EEEECCCCC-cEEEEEECCCCCcEEEEEEEcCCCC---c---cccEEEEEEEee--CCCeeEEEEEEECCC
Confidence 34778888 444443333 899999999 65555555532111 0 034433444554 369999999988766
Q ss_pred C
Q 002724 445 L 445 (888)
Q Consensus 445 g 445 (888)
+
T Consensus 113 ~ 113 (125)
T PF03422_consen 113 G 113 (125)
T ss_dssp S
T ss_pred C
Confidence 4
No 127
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=44.13 E-value=12 Score=34.39 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=14.4
Q ss_pred ceEEEcCEEeecccccc
Q 002724 543 AWIIVHGHIYDCTRFLK 559 (888)
Q Consensus 543 ~wvii~g~VYDvT~fl~ 559 (888)
.+...+|+|||||+|+.
T Consensus 57 yy~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 57 YYACMDGKVYDITEWAT 73 (94)
T ss_pred EEEEcCceEEehhhhhh
Confidence 56678999999999964
No 128
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=40.47 E-value=70 Score=30.32 Aligned_cols=83 Identities=19% Similarity=0.159 Sum_probs=50.0
Q ss_pred ecEEEeeCCCCCeeccCccCCCCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecCCCCCCCCCcccceEeeEEEEe
Q 002724 347 INSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNKYGKYWCWCFWSLELE 426 (888)
Q Consensus 347 v~S~I~~p~~~~~~~~~~~~~~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~~~~~~~~~~~w~W~~W~~~~~ 426 (888)
+.|+-.. .++..|. +++.|+..||. +-..|..|+|+-+||.+..-.+-.........-.+-.|+|.++
T Consensus 9 Le~~~~~-~~~~~L~-------G~V~V~Nlaye----K~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~ 76 (113)
T PF03370_consen 9 LESVSLS-PDQQSLS-------GTVRVRNLAYE----KEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIP 76 (113)
T ss_dssp EEEEEEC---SSEEE-------EEEEEE-SSSS----EEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE
T ss_pred EEEEEEc-CCCCEEE-------EEEEEEcCCCC----eEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEE
Confidence 5555555 3344454 67899998874 5677999999999999876533220000000115678999998
Q ss_pred eecC----CCceEEEEEEE
Q 002724 427 VLDL----LGAKDIAVRAW 441 (888)
Q Consensus 427 ~~~~----~g~~~i~vRA~ 441 (888)
+++. .+.-++++|-.
T Consensus 77 l~~~~~~~~~~lef~I~Y~ 95 (113)
T PF03370_consen 77 LPDLLPPEGGRLEFCIRYE 95 (113)
T ss_dssp -SSE--T-TS-SEEEEEEE
T ss_pred CCcccccCCceEEEEEEEE
Confidence 8765 45677888773
No 129
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=38.73 E-value=80 Score=35.41 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=29.2
Q ss_pred CCcEEEEEEEEeCCCceeEEEEEEeCCCCCceEeeecC
Q 002724 368 QRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDH 405 (888)
Q Consensus 368 ~~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a~l~~ 405 (888)
++.+.+-.+.....+.....+-+|-|+|+||+......
T Consensus 156 ~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~ 193 (351)
T cd00260 156 DGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVN 193 (351)
T ss_pred CCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCC
Confidence 36677777776665567888999999999998766554
No 130
>COG4719 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.04 E-value=23 Score=35.17 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=21.0
Q ss_pred CcEEEEEEEEeCCCceeEEEEEEeCCCCCceEe
Q 002724 369 RPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVC 401 (888)
Q Consensus 369 ~~~~i~G~A~sggg~~i~rVevS~DgG~tW~~a 401 (888)
..|...|.+.+ .-+..+||+|||+||+.-
T Consensus 100 t~yv~a~~dva----~ka~~~~sIDgG~sf~~n 128 (176)
T COG4719 100 TSYVDAGRDVA----LKAAFEVSIDGGESFQGN 128 (176)
T ss_pred cEEEechhhhh----hhhcEEEEecCCcccccC
Confidence 45666666655 245789999999999853
No 131
>TIGR02807 cas6_var CRISPR-associated protein, Cas6-related. Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=37.10 E-value=12 Score=38.84 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.5
Q ss_pred eEEeeccCCccCCCCCCCcE
Q 002724 263 IILAYMQNGELLSPDHGFPV 282 (888)
Q Consensus 263 vlLAy~mNGepL~~~hG~Pl 282 (888)
+=|+|.++|..||.||||+|
T Consensus 4 vDl~F~v~g~~lP~DHay~L 23 (190)
T TIGR02807 4 IDLLFPVRGGTVPADHAYML 23 (190)
T ss_pred EEEEeEecCccccccchHHH
Confidence 44789999999999999986
No 132
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=36.55 E-value=2e+02 Score=28.17 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=51.4
Q ss_pred eEeeecCCCCCCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCccccccccccceEEEEEEEeecCCCc
Q 002724 399 HVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKANVCKAHKGE 478 (888)
Q Consensus 399 ~~a~l~~~~~~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nn~~~~v~~~v~~~~~~~ 478 (888)
..|.|..|.-+.. ...-|-.||.+..-. ..| .|.|...+..+ ++...+|+..|-..+.|.++.|.+.... ..
T Consensus 57 ~~A~L~SP~~~~~-~~~~Cl~F~y~~~g~--~~g--~L~V~v~~~~~--~~~~~lw~~~~~~~~~W~~~~v~l~~~~-~~ 128 (157)
T cd06263 57 QKARLLSPLLPPP-RSSHCLSFWYHMYGS--GVG--TLNVYVREEGG--GLGTLLWSASGGQGNQWQEAEVTLSASS-KP 128 (157)
T ss_pred CEEEEEcccCcCC-CCCeEEEEEEEecCC--CCC--eEEEEEEeCCC--CcceEEEEEECCCCCeeEEEEEEECCCC-Cc
Confidence 3577776643221 112376776665432 134 45554444433 2677899999998999999999996543 56
Q ss_pred eeEEEeCCC
Q 002724 479 IGIVFEHPT 487 (888)
Q Consensus 479 ~~~~f~hp~ 487 (888)
..|+||-=.
T Consensus 129 fqi~fe~~~ 137 (157)
T cd06263 129 FQVVFEGVR 137 (157)
T ss_pred eEEEEEEEE
Confidence 789998643
No 133
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=35.20 E-value=51 Score=37.46 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=22.2
Q ss_pred ceEEEEECCcC--HHHHHHHHHHHHcC
Q 002724 759 KKLAMLAGGTG--ITPIYQIMQAILKD 783 (888)
Q Consensus 759 ~~ivmIAGGTG--ITP~~~ll~~ll~~ 783 (888)
+++++.||||| |.|.+++++++.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~ 28 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED 28 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC
Confidence 47999999998 99999999998753
No 134
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=29.67 E-value=2.3e+02 Score=28.55 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=33.7
Q ss_pred eeEEEEEEeCCCCCceEeeecCCCC-CCCCCcccceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCC
Q 002724 384 KVTRVEVTLDGGDTWHVCTLDHPEQ-PNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPE 450 (888)
Q Consensus 384 ~i~rVevS~DgG~tW~~a~l~~~~~-~~~~~~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~ 450 (888)
.|++|++ .||.++..-.|..... ...| .-.++++ ++-.+..+.|+|.|.|.|.+||+=-.
T Consensus 81 ~i~sv~l--~Gg~~~d~v~ls~~~~~~~~~----~~~yp~~-fpsle~~~~YtLtV~a~D~aGN~~~~ 141 (158)
T PF13750_consen 81 KITSVSL--TGGPASDSVSLSWTNKGNGVY----TLEYPRI-FPSLEADDSYTLTVSATDKAGNQSTK 141 (158)
T ss_pred eEEEEEE--ECCcccceEEEeeEeccCceE----Eeecccc-cCCcCCCCeEEEEEEEEecCCCEEEE
Confidence 5655554 6777776655543221 1122 1222222 11112357899999999999997543
No 135
>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=28.11 E-value=1e+02 Score=38.16 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=33.6
Q ss_pred eeEEEE-EEeCCCCCceEeeecCCCCCCC-CCcccceEeeEEEEeeecCCCce-EEEEE-EEcC
Q 002724 384 KVTRVE-VTLDGGDTWHVCTLDHPEQPNK-YGKYWCWCFWSLELEVLDLLGAK-DIAVR-AWDE 443 (888)
Q Consensus 384 ~i~rVe-vS~DgG~tW~~a~l~~~~~~~~-~~~~w~W~~W~~~~~~~~~~g~~-~i~vR-A~D~ 443 (888)
--..|| ||+|||.||+.-.......+.. .+..=.|+..+++++. -+|.. .|..| .||.
T Consensus 383 Dy~~VevvStdGg~Twt~~~g~~~~~~~~~~~~sg~Wv~~~~DLSa--yAGqtV~LrFrY~TD~ 444 (645)
T PF05547_consen 383 DYAYVEVVSTDGGKTWTPLPGNTTGNGNPNGGSSGGWVDASFDLSA--YAGQTVQLRFRYVTDG 444 (645)
T ss_pred ceEEEEEEEcCCCceeEecCccccccCCCCCCCccceeEeEecccc--ccCCeEEEEEEEEcCC
Confidence 356788 9999999998654432211111 1111158888887764 35643 46666 4453
No 136
>PLN02631 ferric-chelate reductase
Probab=26.59 E-value=91 Score=38.98 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCCcEEEEECChhhHHHHHHHHHHhcC
Q 002724 852 SGDTLALACGPPPMIQFAVQPNLEKMN 878 (888)
Q Consensus 852 ~~~~~vyvCGPp~mi~~av~~~L~~~G 878 (888)
..+..|++|||+.|-+ .|.+.++...
T Consensus 661 ~~~vgvlv~gp~~~~~-~va~~c~s~~ 686 (699)
T PLN02631 661 SEDVGVMVCGPRKMRH-EVAKICSSGL 686 (699)
T ss_pred CCceeEEEECcHHHHH-HHHHHHhcCC
Confidence 3588999999999965 8888887644
No 137
>PF09559 Cas6: Cas6 Crispr; InterPro: IPR014174 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this entry resemble the Cas6 proteins described by IPR010156 from INTERPRO in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis (strain ATCC 29413/PCC 7937), Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus (strain DK 1622). Oddly, an orphan member is found in Thiobacillus denitrificans (strain ATCC 25259), whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Probab=26.58 E-value=22 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=15.4
Q ss_pred EeeccCCccCCCCCCCcE
Q 002724 265 LAYMQNGELLSPDHGFPV 282 (888)
Q Consensus 265 LAy~mNGepL~~~hG~Pl 282 (888)
|.|.++|+.||.||||+|
T Consensus 3 l~F~i~g~~LP~DH~y~L 20 (195)
T PF09559_consen 3 LVFSIRGKTLPADHAYAL 20 (195)
T ss_pred EEEEeCCcccCcccHHHH
Confidence 678889999999999875
No 138
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=26.47 E-value=77 Score=31.99 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=20.1
Q ss_pred eEEEEeeecC-CCceEEEE-EEEcCCCCCC
Q 002724 421 WSLELEVLDL-LGAKDIAV-RAWDETLNTQ 448 (888)
Q Consensus 421 W~~~~~~~~~-~g~~~i~v-RA~D~~g~~Q 448 (888)
|.+.|....+ .|.|.|.+ +|.|.+||..
T Consensus 3 ~~~~fd~~~l~dG~Y~l~~~~a~D~agN~~ 32 (158)
T PF13750_consen 3 YTYTFDLSTLPDGSYTLTVVTATDAAGNTS 32 (158)
T ss_pred EEEEEEeCcCCCccEEEEEEEEEecCCCEE
Confidence 4444443332 59999999 8999999964
No 139
>PRK00036 primosomal replication protein N; Reviewed
Probab=25.56 E-value=1.7e+02 Score=27.81 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.5
Q ss_pred ChhcHHHhcCCCCCEEEEEccccc
Q 002724 717 GLMSQYLDSLSVGSILDVKGPLGH 740 (888)
Q Consensus 717 G~~S~~L~~L~~Gd~V~IkGP~G~ 740 (888)
|.++..+..+.+|..+.+.|-...
T Consensus 55 G~~a~~~~~l~~Gs~v~v~GFLa~ 78 (107)
T PRK00036 55 GDLALLLADTPLGTEMQVQGFLAP 78 (107)
T ss_pred hhHHHHhcccCCCCEEEEEEEEEE
Confidence 789999999999999999997664
No 140
>PLN02292 ferric-chelate reductase
Probab=24.45 E-value=1e+02 Score=38.62 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCCcEEEEECChhhHHHHHHHHHHhcC
Q 002724 852 SGDTLALACGPPPMIQFAVQPNLEKMN 878 (888)
Q Consensus 852 ~~~~~vyvCGPp~mi~~av~~~L~~~G 878 (888)
..+..|++|||+.|-+ .|.+.++...
T Consensus 664 ~~~vgvlv~gp~~~~~-~va~~c~s~~ 689 (702)
T PLN02292 664 GSSVGVLVCGPKKMRQ-KVAKICSSGL 689 (702)
T ss_pred CCceeEEEECcHHHHH-HHHHHHhcCC
Confidence 4688999999999965 8888887654
No 141
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=23.11 E-value=3.3e+02 Score=26.03 Aligned_cols=62 Identities=24% Similarity=0.532 Sum_probs=35.4
Q ss_pred ceEeeEEEEeeecCCCceEEEEEEEcCCCCCCCCCCccccccccccceEEEEEEEeecCCCceeEEEeC
Q 002724 417 CWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKANVCKAHKGEIGIVFEH 485 (888)
Q Consensus 417 ~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nn~~~~v~~~v~~~~~~~~~~~f~h 485 (888)
|-.||.+.... ....|.|...+. ...+...+|...|-..+.|.+..|.+... .....|+||-
T Consensus 75 cl~F~y~~~g~----~~~~L~V~v~~~--~~~~~~~l~~~~~~~~~~W~~~~v~l~~~-~~~~~i~f~~ 136 (160)
T PF00629_consen 75 CLSFWYYMYGS----SVGTLRVYVREE--STGNSTPLWSITGSQGNSWQRAQVNLPPI-SSPFQIIFEA 136 (160)
T ss_dssp EEEEEEEEE-S----SSEEEEEEEEET--T----S-SEEE-----SSEEEEEEEE----TS-EEEEEEE
T ss_pred eeEEEEeeccc----cceeeEEEEEec--CCccceeeeeecCCCcCCccceEEEcccc-cccceEEEEE
Confidence 87777776542 224577777776 44555668999999999999999998765 5667899985
No 142
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=22.33 E-value=1e+02 Score=29.88 Aligned_cols=60 Identities=15% Similarity=0.349 Sum_probs=42.4
Q ss_pred CCeEEEEEEeccccCCccccccccCHHHHHhhCCCCCCCcEEEEECChh------------hHHHHHHHHHHhcCCCCCC
Q 002724 816 DRVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTLALACGPPP------------MIQFAVQPNLEKMNYDTKD 883 (888)
Q Consensus 816 ~~f~v~~~~s~~~~~~w~~~~Grv~~~~L~~~l~~~~~~~~vyvCGPp~------------mi~~av~~~L~~~Gv~~~~ 883 (888)
++++++-+- ..|+|+..++.+.+....+...|.-|.|.. -++ .+++.|+++|++ ++
T Consensus 27 ~~vriIrvp----------C~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~-~~k~~L~~~Gi~-~e 94 (124)
T PF02662_consen 27 PNVRIIRVP----------CSGRVDPEFILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVE-RLKKLLEELGIE-PE 94 (124)
T ss_pred CCeEEEEcc----------CCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHH-HHHHHHHHcCCC-hh
Confidence 567766553 248999988888876545555566677643 233 567899999999 88
Q ss_pred CEEE
Q 002724 884 SLLV 887 (888)
Q Consensus 884 ~I~~ 887 (888)
+|.+
T Consensus 95 Rv~~ 98 (124)
T PF02662_consen 95 RVRL 98 (124)
T ss_pred HeEE
Confidence 8875
No 143
>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]
Probab=21.90 E-value=2.5e+02 Score=30.42 Aligned_cols=55 Identities=22% Similarity=0.374 Sum_probs=37.5
Q ss_pred EEEECCc-CHHHHHHHHHHHHcCCCCCceEEEEEecCCCchhhhHHHHHHHHHhCCCeEEEEE
Q 002724 762 AMLAGGT-GITPIYQIMQAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHDRVKVWYV 823 (888)
Q Consensus 762 vmIAGGT-GITP~~~ll~~ll~~~~~~~~i~Li~~~Rt~~Dil~~dEL~~l~~~~~~f~v~~~ 823 (888)
+||.||- ||- +.+++++++. ..--+++..+|+.+-. .+||+.+...++|+++.-.
T Consensus 6 v~ItGaNRGIG--lgLVk~llk~---~~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~L 61 (249)
T KOG1611|consen 6 VFITGANRGIG--LGLVKELLKD---KGIEVIIATARDPEKA--ATELALKSKSDSRVHIIQL 61 (249)
T ss_pred EEEeccCcchh--HHHHHHHhcC---CCcEEEEEecCChHHh--hHHHHHhhccCCceEEEEE
Confidence 5666643 554 5677888765 3445567777777665 7788888877888887654
No 144
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.76 E-value=1e+02 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=19.3
Q ss_pred EEEEeeecCCCceEEEEEEEcCCCCCCCC
Q 002724 422 SLELEVLDLLGAKDIAVRAWDETLNTQPE 450 (888)
Q Consensus 422 ~~~~~~~~~~g~~~i~vRA~D~~g~~QP~ 450 (888)
++.++.. .+|.|+|.|||.|..|.....
T Consensus 30 ~~~~~~L-~~G~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNL-PPGKYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES---SEEEEEEEEEEETTS-B-SS
T ss_pred EEEEEeC-CCEEEEEEEEEECCCCCcCcc
Confidence 4555554 379999999999999876653
No 145
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=21.57 E-value=3.9e+02 Score=29.84 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=48.0
Q ss_pred eeeEEEEEEEEecCceee--eeecc--CCCCceEeee----------------eeeeeeecccCCCCCcEEEEEEEEEee
Q 002724 648 KIPCKLVEKILISHDVRL--FRFAL--PQEDQVLGLP----------------LCMRAYTPTSSVDEVGHFDLVVKIYFK 707 (888)
Q Consensus 648 ~~~~~Lv~k~~ls~dv~~--f~f~l--p~pGQ~l~Lp----------------~~~R~YTp~S~~~~~g~leL~IK~y~~ 707 (888)
...++|+.++.+...-|. =+..+ ...|-.++-. ...|||-+ ..|.+.-.||+
T Consensus 199 L~~a~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRV-----NAG~VhaYi~v--- 270 (376)
T COG1465 199 LVTATVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRV-----NAGAVHAYIRV--- 270 (376)
T ss_pred EEEEEEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEecccccCcccccCceee-----cccceeEEEEc---
Confidence 356889999998754332 22222 2223222211 33455543 24678888887
Q ss_pred cCCCCCCCCChhcHHHhcCCCCCEEEEEccccc
Q 002724 708 GVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGH 740 (888)
Q Consensus 708 ~~~~~~P~gG~~S~~L~~L~~Gd~V~IkGP~G~ 740 (888)
| |.-|+||..|+.||+|.|----|.
T Consensus 271 ------P--g~kTkYLaEL~aGDeV~iVD~dGr 295 (376)
T COG1465 271 ------P--GGKTKYLAELKAGDEVLIVDFDGR 295 (376)
T ss_pred ------C--CCceEEhhhhcCCCeEEEEecCCc
Confidence 4 667999999999999998665554
No 146
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=20.95 E-value=1.3e+03 Score=26.83 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=34.9
Q ss_pred CeEEeeccCCccCCCCCCCcEEEEccC---ccccc----cccceeE----EEEEeeCCCcceeeec
Q 002724 262 DIILAYMQNGELLSPDHGFPVRVIIPG---CIGGR----MVKWLKR----IIVTTQESDNYYHYKD 316 (888)
Q Consensus 262 dvlLAy~mNGepL~~~hG~PlRlvvPg---~~G~r----~vKWl~~----I~v~~~~~~~~~~~~d 316 (888)
=++|.|+-+|. -|+.||-|. +|..+ .|||... |.=.+.+-+|-||.-+
T Consensus 19 iT~LifR~~gs-------~pvvLV~PDGsk~ya~~~~p~~V~W~~~~~~DlItI~~PmpGpWq~~G 77 (374)
T TIGR03503 19 ITLLFFREPGS-------PPVILVRPDGSKYYAWRVHPEDVKWYDESTMDIISIKNPMPGPWQAIG 77 (374)
T ss_pred EEEEEEecCCC-------CCeEEECCCCcEEeccCCCCCCceEEecCCceEEEeCCCCCCCcEEee
Confidence 47999998766 499999996 55555 6999875 3334556778888644
No 147
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=20.51 E-value=60 Score=36.38 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=17.3
Q ss_pred EEEEeCCCceeEEEEEEeCCCCCceEeeecC
Q 002724 375 GYAYSGGGKKVTRVEVTLDGGDTWHVCTLDH 405 (888)
Q Consensus 375 G~A~sggg~~i~rVevS~DgG~tW~~a~l~~ 405 (888)
.||-.|+| -+=+|.|+|+||+..+...
T Consensus 246 ~wa~gg~G----~l~~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 246 IWAVGGSG----TLLVSTDGGKTWQKDRVGE 272 (302)
T ss_dssp EEEEESTT-----EEEESSTTSS-EE-GGGT
T ss_pred EEEEeCCc----cEEEeCCCCccceECcccc
Confidence 45544433 4779999999999887754
Done!