Query 002724
Match_columns 888
No_of_seqs 540 out of 4165
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 17:31:32 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002724.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1441-1444//hhsearch_pdb/002724hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bih_A Nitrate reductase [NADP 1.0 1 1 984.9 30.9 431 63-511 11-461 (474)
2 2bii_A Nitrate reductase [NADP 1.0 1 1 926.8 29.9 391 103-511 1-411 (424)
3 1sox_A Sulfite oxidase; oxidor 1.0 1 1 813.9 35.8 374 79-472 90-465 (466)
4 2a9d_A Sulfite oxidase; molybd 1.0 1 1 809.5 34.5 364 91-472 6-371 (372)
5 1ogp_A Sulfite oxidase; oxidor 1.0 1 1 804.8 31.1 363 92-471 14-388 (393)
6 2blf_A SORA, sulfite\:cytochro 1.0 1 1 779.7 31.7 359 87-472 13-373 (373)
7 2xts_A Sulfite dehydrogenase; 1.0 1 1 666.6 27.5 348 80-471 22-380 (390)
8 1xdy_A Bacterial sulfite oxida 1.0 1 1 403.9 4.4 247 101-400 22-292 (298)
9 1umk_A B5R, NADH-cytochrome B5 1.0 1 1 303.1 27.0 249 638-888 6-275 (275)
10 2cnd_A NADH-dependent nitrate 1.0 1 1 298.1 24.4 245 642-887 5-268 (270)
No 1
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation, oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Probab=1.00 E-value=1 Score=984.93 Aligned_cols=431 Identities=45% Similarity=0.890 Sum_probs=400.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--
Q ss_conf 799999809998999778989879979646669785021488889889991011238887889962674589999768--
Q 002724 63 DYMEIIRKGNSELEPSILDPRDEGTADNWIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKAS-- 140 (888)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~d~~t~d~~~~r~~~l~~~t~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d-- 140 (888)
+..+++--.+++++++.+|++|++|||.|++|++.||++++++|||+|||+..|+.+++|||+++||||||+++|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~d~~tpd~~~~r~~~li~~~~~~P~n~E~p~~~L~~~~~iTP~~~~yvr~h~~vP~i~~~ 90 (474)
T 2bih_A 11 DITELPFPVRQDSPLTEVLPTDLKTKDNFVARDPDLLRLTGSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDE 90 (474)
T ss_dssp -----CCCCCCCCCCCCCCHHHHTSTTTTCCCCTTSEESSTTSSCEEECCHHHHHHTCSSCCGGGSCEECSSCCCCCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 31136888996546552375668898423578811178627887667899899701466599744789825898865657
Q ss_pred -CCCCEEEEEECCCCCEEECHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHC
Q ss_conf -9871999985049941211988834299829979987615881001223333575447786102089821268899882
Q 002724 141 -WVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRC 219 (888)
Q Consensus 141 -~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~a 219 (888)
.++|+|+|+|+|++|++||++||+++||+++++++|+|+||+|+|||+++++.|++|+.+++||+.|+||+|+|||++|
T Consensus 91 d~~~w~L~V~G~V~~p~~ltl~dL~~~lp~~~~~~~l~CvgN~r~e~~~v~~~~G~~W~~~avs~a~WtGV~L~dlL~~a 170 (474)
T 2bih_A 91 NILDWEVSIEGMVETPYKIKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKA 170 (474)
T ss_dssp TGGGCEEEEEESBSSCEEEEHHHHHHHSCCEEEEEEEECTTTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHT
T ss_pred CCCCEEEEEEEECCCCEEEEHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHC
T ss_conf 87876999970449863863999860289759999888048851011334554566556684465489967999999766
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEE
Q ss_conf 99857997019999705779999988860767741125968982885020894588999981899904810000122405
Q 002724 220 GIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLK 299 (888)
Q Consensus 220 g~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~ 299 (888)
|++ .+|+||+|+|+|.++++ +|.+||||++||++.+++||||+||||||+++|||||||||||+||+||||||+
T Consensus 171 G~~---~~A~~V~f~g~D~~~~g---~Y~~sipl~~ald~~~dvlLA~~mNGepLp~~hG~PlRLVvPg~~G~rsvKWL~ 244 (474)
T 2bih_A 171 RPS---KRARFVWMEGADNPANG---AYGTCIRLSWCMDPERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLK 244 (474)
T ss_dssp CBC---TTCCEEEEEESCCCTTS---SCEEEEEHHHHTCTTTCCEEEEEETTEECCGGGTTTCEEECTTBBGGGSCSSEE
T ss_pred CCC---CCCEEEEEEECCCCCCC---CEEEEEEHHHHHCCCCCEEEEEEECCEECCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 999---88539999806878889---867887999974868878999836990997347970499926500578640477
Q ss_pred EEEEEEECCCCCEEEECCCCCCCCCCHHHCCCC-CCCCCCCCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEE
Q ss_conf 999884079961122056448987792100232-3324543311230202899607999822057667998599999998
Q 002724 300 RIIVTTQESDNYYHYKDNRVLPSHVDAELANAE-AWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAY 378 (888)
Q Consensus 300 ~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~~~~-~~w~~~~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~ 378 (888)
+|+|+++++++|||++|||++|++++++.+..+ +||+++.++|++|+|||+|++|.+++++++. +++|+|+||||
T Consensus 245 ~Iev~~~~~~g~~~~~~yrv~p~~~~~~~~~~~~~~W~~~~~~i~~~~vnS~I~~P~~~e~v~~~----~g~~~v~GyA~ 320 (474)
T 2bih_A 245 KLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKIS----EDEYEIAGFGY 320 (474)
T ss_dssp EEEEESSCCCCHHHHHSSBCCCTTCCHHHHHTCGGGGSCGGGBCCBCCCEEEEEESCTTCEEECC----SCEEEEEEEEE
T ss_pred EEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCEEECC----CCEEEEEEEEE
T ss_conf 89999646898205504402578878210234567656675230013555587667999886038----97599999999
Q ss_pred ECCCCEEEEEEEEECCCCCCEEEEECCCCCCCC-------CC---------CCCCEEEEEEEEEEECCCCCEEEEEEEEC
Q ss_conf 199960599999828998805733069999888-------89---------60013766999853257994289999881
Q 002724 379 SGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNK-------YG---------KYWCWCFWSLELEVLDLLGAKDIAVRAWD 442 (888)
Q Consensus 379 sGgg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~-------~g---------~~w~W~~W~~~~~~~~~~g~~~i~vRA~D 442 (888)
|||||+|+|||||+|||+||+.|+|.+++.+++ || ++||||+|+++|++.++.|+++|+|||||
T Consensus 321 sGGGr~I~RVEVS~DgG~TW~~A~L~~pe~~~r~~~~~~~~g~~~~~~~~~~~~~W~~W~~~~~~~~~~g~~~I~vRA~D 400 (474)
T 2bih_A 321 NGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRLFGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMD 400 (474)
T ss_dssp CSTTCCEEEEEEESSSSSSCEECEEECTHHHHHHTCCEEETTEEECGGGCCCCCSCEEEEEEEEHHHHHTCSEEEEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
T ss_conf 48998778999973899975477635766653334432234653441001245301156897752237885599999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999979998764323566430699999995368883039970888999878886410012377888631
Q 002724 443 ETLNTQPEKLIWNVMGMMNNCWFRVKANVCKAHKGEIGIVFEHPTQPGNQSGGWMAKERHLGRSSDANQ 511 (888)
Q Consensus 443 ~~g~~QP~~~~wN~~G~~nN~~~~v~v~v~~~~~~~~~~~f~hp~~~~~~~ggWm~~~~~~~~~~~~~~ 511 (888)
++||+||++++||++|||||+||||+|++ ++| +|+|||||+|| ++||||+|+|. .++++.+
T Consensus 401 ~sgn~QP~~~~WN~~G~~nN~~~rV~v~~---~~~--~~~f~hp~~~~-~~ggwm~~~~~--~~~~~~~ 461 (474)
T 2bih_A 401 ERMMVQPRTMYWNVTSMLNNWWYRVAIIR---EGE--SLRFEHPVVAN-KPGGWMDRVKA--EGGDILD 461 (474)
T ss_dssp TTCCBCCSSCCCCTTCCSCCSCEEEEEEE---ETT--EEEEECSCCSS-SCCSHHHHHHH--HTCCTTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEE---CCC--EEEEECCCCCC-CCCCCCCHHHH--CCCCCCC
T ss_conf 88885879765443563157679999995---599--79973888999-88837442554--4666556
No 2
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum, nitrate assimilation, oxidoreductase; HET: MTV; 1.70A {Pichia angusta}
Probab=1.00 E-value=1 Score=926.83 Aligned_cols=391 Identities=46% Similarity=0.938 Sum_probs=364.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC---CCCCEEEEEECCCCCEEECHHHHHHHCCCEEEEEEEEEE
Q ss_conf 88889889991011238887889962674589999768---987199998504994121198883429982997998761
Q 002724 103 GKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKAS---WVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPVTLVCA 179 (888)
Q Consensus 103 ~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d---~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~~l~Ca 179 (888)
|+||||+|||+..|++++||||+++||||||+++|.++ .++|+|+|+|+|++|++||++||+++||+++++++|+|+
T Consensus 1 g~~P~N~E~P~~~L~~~~~iTP~~~~yvr~h~~vP~i~~~d~~~w~L~V~G~V~~p~~ltl~dL~~~lp~~~~~~~l~C~ 80 (424)
T 2bii_A 1 GSHPFNSEPPLTKLYDSGFLTPVSLHFVRNHGPVPYVPDENILDWEVSIEGMVETPYKIKLSDIMEQFDIYSTPVTMVCA 80 (424)
T ss_dssp ---CEEECCCHHHHHHTCSSCCGGGSCEEESSCCCCCCGGGGGGCEEEEEESBSSCEEEEHHHHHHHSCCEEEEEEEECT
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCHHEEEECCCCCCCCCCCCCCCEEEEEEEECCCCEEEEHHHHHCCCCCEEEEEEEEEC
T ss_conf 98875689897998137861894015884389999647678887699997254996185099986138975999988804
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 58810012233335754477861020898212688998829985799701999970577999998886076774112596
Q 002724 180 GNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTSIRKEVGMDP 259 (888)
Q Consensus 180 gn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~sipl~~a~~~ 259 (888)
||+|+|||+++++.|++|+.++|||+.|+||+|+|||++||++ .+|+||+|+|+|.++++ +|.+||||++||++
T Consensus 81 gN~r~~~~~~~~~~G~~W~~~ai~~a~WtGV~L~dlL~~ag~~---~~a~~V~f~~~D~~~~g---~Y~~sipl~~a~d~ 154 (424)
T 2bii_A 81 GNRRKEQNMVKKGAGFNWGAAGTSTSLWTGCMLGDVIGKARPS---KRARFVWMEGADNPANG---AYGTCIRLSWCMDP 154 (424)
T ss_dssp TTTHHHHHHHSCCSSCCCCSCCEEEEEEEEEEHHHHHHHHCBC---TTCCEEEEEESCCCTTS---SCEEEEEHHHHTCT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEHHHHHHHCCCC---CCCEEEEEEECCCCCCC---CEEEEEEHHHHHCC
T ss_conf 8851011334443565556684585489825999999755999---88449999806878889---97888899997487
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCHHHCCCC-CCCCCC
Q ss_conf 8982885020894588999981899904810000122405999884079961122056448987792100232-332454
Q 002724 260 ARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAELANAE-AWWYKP 338 (888)
Q Consensus 260 ~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~~~~-~~w~~~ 338 (888)
.+++||||+||||||+++|||||||||||+||+||||||++|+|+++++++|||++|||++|++++++.+..+ +||+++
T Consensus 155 ~~dvlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwl~~I~v~~~~~~g~~~~~~yrv~p~~~~~~~~~~~~~~w~~~ 234 (424)
T 2bii_A 155 ERCIMIAYQQNGEWLHPDHGKPLRVVIPGVIGGRSVKWLKKLVVSDRPSENWYHYFDNRVLPTMVTPEMAKSDDRWWKDE 234 (424)
T ss_dssp TTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSBCCCTTCCHHHHHHCGGGGSCG
T ss_pred CCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 88889997569928974469724999466216785405868999964689811550430157887821023456765667
Q ss_pred CCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCCCCC-------
Q ss_conf 3311230202899607999822057667998599999998199960599999828998805733069999888-------
Q 002724 339 EYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPNK------- 411 (888)
Q Consensus 339 ~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~a~l~~~~~~~~------- 411 (888)
.++|++|+|||+|++|.+++++++. +++|+|+|||||||||+|+|||||+|||+||+.|+|.+|+.+++
T Consensus 235 ~~~i~~l~v~S~I~~P~~~~~v~~~----~g~~~v~GyA~sGGGr~I~rVEVS~DgG~tW~~A~L~~pe~~~~~~~~~~~ 310 (424)
T 2bii_A 235 RYAIYDLNLQTIICKPENQQVIKIS----EDEYEIAGFGYNGGGVRIGRIEVSLDKGKSWKLADIDYPEDRYREAGYFRL 310 (424)
T ss_dssp GGBCCBCCCEEEEEESCTTCEEECC----SCEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEECTHHHHHHTCSEEE
T ss_pred CCEECCCCCCEEEECCCCCCEEECC----CCEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 5140134654699667999986038----975999999994899877899997389997457673576776333443123
Q ss_pred CC---------CCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
Q ss_conf 89---------600137669998532579942899998819999799987643235664306999999953688830399
Q 002724 412 YG---------KYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKANVCKAHKGEIGIV 482 (888)
Q Consensus 412 ~g---------~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nN~~~~v~v~v~~~~~~~~~~~ 482 (888)
|| ++||||+|+++|+++++.|+++|+|||||++||+||++++||++|||||+||||+|++ +.+ +|+
T Consensus 311 ~g~~~~~~~~~~~~~W~~W~~~~~~~~~~g~~~I~vRA~D~~gn~QP~~~~WN~~G~~nN~~~rv~v~~---~~~--~~~ 385 (424)
T 2bii_A 311 FGGLVNVCDRMSCLCWCFWKLKVPLSELARSKDILIRGMDERMMVQPRTMYWNVTSMLNNWWYRVAIIR---EGE--SLR 385 (424)
T ss_dssp TTEEECGGGCCCCCSCEEEEEEEEHHHHHTCSEEEEEEEETTCCBCCSSCCCCTTCCSCCSCEEEEEEE---ETT--EEE
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEE---CCC--EEE
T ss_conf 465333100124530336689776101788419999988488884879766442563147679999995---599--899
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 70888999878886410012377888631
Q 002724 483 FEHPTQPGNQSGGWMAKERHLGRSSDANQ 511 (888)
Q Consensus 483 f~hp~~~~~~~ggWm~~~~~~~~~~~~~~ 511 (888)
|||||+|| ++||||+|+|. .++++.+
T Consensus 386 f~hp~~~~-~~~gwm~~~~~--~~~~~~~ 411 (424)
T 2bii_A 386 FEHPVVAN-KPGGWMDRVKA--EGGDILD 411 (424)
T ss_dssp EECSCBTT-BCCSHHHHHHH--TTCCTTS
T ss_pred EECCCCCC-CCCCCCCHHHH--CCCCCCC
T ss_conf 72888999-88837542553--4566557
No 3
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=1.00 E-value=1 Score=813.92 Aligned_cols=374 Identities=38% Similarity=0.722 Sum_probs=338.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 78989879979646669785021488889889991011238887889962674589999768987199998504994121
Q 002724 79 ILDPRDEGTADNWIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARF 158 (888)
Q Consensus 79 ~~~~~d~~t~d~~~~r~~~l~~~t~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~l 158 (888)
..+..|..+++ .+|++.|+ +++++|||+|||++.|. .++|||+++||||||+++|.+|+++|+|+|+|+|++|++|
T Consensus 90 ~~~~~~~~~~~--p~~~~~l~-~~~~~p~n~E~p~~~l~-~~~iTp~~~~yvr~h~~vP~id~~~w~L~V~G~V~~p~~l 165 (466)
T 1sox_A 90 APDAQDPFAGD--PPRHPGLR-VNSQKPFNAEPPAELLA-ERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGPGGGTLSL 165 (466)
T ss_dssp -CSSSCTTTTC--CCCCTTSE-EEETTTTEEECCHHHHT-SSSSCCGGGSCEECSSCCCCCCGGGCEEEEECTTSCCEEE
T ss_pred CCCCCCCCCCC--CCCCCCEE-ECCCCCCCCCCCHHHHC-CCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCEEE
T ss_conf 32234866568--77686608-83678865689958835-4663401247882699999567777499995666886586
Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEEECCC
Q ss_conf 19888342998299799876158810012233335754477861020898212688998829985799701999970577
Q 002724 159 TMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAED 238 (888)
Q Consensus 159 tl~dL~~~~p~~~~~~~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~~a~~V~~~g~D~ 238 (888)
||+||+++||+++++++|+|+||||+||++++++.|++|+.++|||+.|+||+|+|||++||+...+.+++||+|+|+|.
T Consensus 166 tl~dL~~~lp~~~~~~~l~C~gN~r~~~~~~~~v~G~~W~~gai~~~~W~Gv~L~dlL~~ag~~~~~~~a~~V~~~~~D~ 245 (466)
T 1sox_A 166 SLAELRSRFPKHEVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGLDA 245 (466)
T ss_dssp EHHHHHHHSCEEEEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEEEE
T ss_pred EHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 69998854887599999994689710004566656644466733022589779999998749987899867999993577
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCC
Q ss_conf 99999888607677411259689828850208945889999818999048100001224059998840799611220564
Q 002724 239 LPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNR 318 (888)
Q Consensus 239 ~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~d~r 318 (888)
++++ .+|.+||||++||+|..++||||+||||||+++|||||||||||+||+||||||++|+|+++++++|||..+|+
T Consensus 246 ~~~~--~~Y~~sipl~~a~~p~~~~lLA~~mNGepL~~~hG~PlRlvvPg~~G~~svKwl~~I~v~~~~~~~~w~~~~Y~ 323 (466)
T 1sox_A 246 DPGG--APYGASIPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYK 323 (466)
T ss_dssp CTTC--CEEEEEEEHHHHHCTTTCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCSHHHHSSSC
T ss_pred CCCC--CCEEEEEEHHHHHCCCCCEEEEECCCCEECCHHCCCEEEEEECCHHHEEEEEECCEEEEEECCCCCCCEECCCE
T ss_conf 8888--98788749999748799999997769929981029517999444251431022258999967789841305736
Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCC
Q ss_conf 48987792100232332454331123020289960799982205766799859999999819996059999982899880
Q 002724 319 VLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTW 398 (888)
Q Consensus 319 ~~p~~~~~~~~~~~~~w~~~~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~sGgg~~I~rVEVS~DgG~tW 398 (888)
++|+.++++..+ | ++.++|++|++||+|++|.+++.++. ++|+|+||||||||++|+|||||+|||+||
T Consensus 324 ~~~p~~~~~~~~----~-~~~~~i~~~~v~S~I~~P~~~~~v~~------g~~~v~G~A~sggg~~I~rVEVS~DgG~tW 392 (466)
T 1sox_A 324 GFSPCVDWDTVD----Y-RTAPAIQELPVQSAVTQPRPGAAVPP------GELTVKGYAWSGGGREVVRVDVSLDGGRTW 392 (466)
T ss_dssp CCCTTCCTTTCC----G-GGSCCCCBCCCEEEEEESCTTCEECS------EEEEEEEEEECSTTCCEEEEEEESBTTSSC
T ss_pred ECCCCCCCCCCC----C-CCCCCCCCCCCCEEEECCCCCCEECC------CEEEEEEEEECCCCCCEEEEEEECCCCCCC
T ss_conf 669988721134----4-55662444454489954799998516------629999999958997888999975899964
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCC--CCCCCCCCCCCEEEEEEEEE
Q ss_conf 573306999988889600137669998532579942899998819999799987--64323566430699999995
Q 002724 399 HVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKL--IWNVMGMMNNCWFRVKANVC 472 (888)
Q Consensus 399 ~~a~l~~~~~~~~~g~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~--~wN~~G~~nN~~~~v~v~v~ 472 (888)
+.|+|..++.+ ++++||||+|+++|++.+ .|+++|+|||||++||+||++. +||++|||||+||||+|+|.
T Consensus 393 ~~A~l~~~~~~--~~~~~~W~~W~~~~~~~~-g~~~~i~~RA~D~~g~~QP~~~~~~wn~~G~~~n~~~~v~v~v~ 465 (466)
T 1sox_A 393 KVARLMGDKAP--PGRAWAWALWELTVPVEA-GTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSVQ 465 (466)
T ss_dssp EECEECSCCCC--TTCCCSCEEEEEEEEECT-TCEEEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEEEEEEC
T ss_pred EEEECCCCCCC--CCCCCEEEEEEEEEECCC-CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 57455775666--677427999888677599-98789999998589982889766772888741261899999983
No 4
>2a9d_A Sulfite oxidase; molybdopterin, molybdenum, oxidoreductase; HET: MTE; 1.70A {Gallus gallus} SCOP: b.1.18.6 d.176.1.1 PDB: 2a9a_A* 2a99_A* 2a9b_A* 2a9c_A*
Probab=1.00 E-value=1 Score=809.53 Aligned_cols=364 Identities=38% Similarity=0.735 Sum_probs=333.9
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEECHHHHHHHCCCE
Q ss_conf 46669785021488889889991011238887889962674589999768987199998504994121198883429982
Q 002724 91 WIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSR 170 (888)
Q Consensus 91 ~~~r~~~l~~~t~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~ 170 (888)
..+|++.|+ ++++||||+|||++.|. .++|||+++||||||+++|.+|+++|+|+|+|+|++|++||++||+++||++
T Consensus 6 ~p~r~~~l~-~~~~~P~n~E~p~~~l~-~~~iTP~~~~yvr~h~~vP~id~~~w~L~V~G~V~~p~~ltl~dL~~~lp~~ 83 (372)
T 2a9d_A 6 DPPRHPGLR-VNSQKPFNAEPPAELLA-ERFLTPNELFFTRNHLPVPAVEPSSYRLRVDGPGGRTLSLSLAELRSRFPKH 83 (372)
T ss_dssp CCCCCTTSE-EEETTTTEEECCHHHHT-SSSSCCTTTSCEECSSCCCCCCTTTCEEEEECC---CEEEEHHHHHHHSCCE
T ss_pred CCCCCCCCE-ECCCCCCCCCCCHHHHC-CCCCCCCHHEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEHHHHHHHCCCE
T ss_conf 888797715-74789875689969946-5885884011583589898336777599998475996697399988438873
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEE
Q ss_conf 99799876158810012233335754477861020898212688998829985799701999970577999998886076
Q 002724 171 EFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGGSKYGTS 250 (888)
Q Consensus 171 ~~~~~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~~a~~V~~~g~D~~~~~~~~~Y~~s 250 (888)
+++++|+|+||||+||++++++.|++|+.++|||+.|+||+|+|||++||+...+.+++||+|+|+|..+.+ .+|.+|
T Consensus 84 ~~~~~l~C~gN~r~~~~~~~~v~G~~w~~gav~~~~W~GV~L~dlL~~ag~~~~~~~a~~V~~~~~D~~~~~--~~Y~~s 161 (372)
T 2a9d_A 84 EVTATLQCAGNRRSEMSRVRPVKGLPWDIGAISTARWGGARLRDVLLHAGFPEELQGEWHVCFEGLDADPGG--APYGAS 161 (372)
T ss_dssp EEEEEEECTTTTHHHHHTTSCCSSCCCCTTSEEEEEEEEEEHHHHHHHTTCCSCCSSCCEEEEEEEEECTTC--CEEEEE
T ss_pred EEEEEEEECCCCHHHCCCCCCCCCCCCCCCCEECCEEEEEEHHHHHHHCCCCCCCCCCEEEEEEECCCCCCC--CCEEEE
T ss_conf 899989954786021034666555323467430446896799999986499767898479999935888778--985787
Q ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCHHHCC
Q ss_conf 77411259689828850208945889999818999048100001224059998840799611220564489877921002
Q 002724 251 IRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDAELAN 330 (888)
Q Consensus 251 ipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~~~~~~~ 330 (888)
|||++||+|..++||||+||||||+++|||||||||||+||+||||||++|+|+++++++|||..+|+++|+.++++..+
T Consensus 162 ipl~~a~dp~~d~lLA~~mNGepL~~~hG~PlRlVvPg~~G~ksvKwl~~I~v~~~~~~~~w~~~~Y~~~~p~~~~~~~~ 241 (372)
T 2a9d_A 162 IPYGRALSPAADVLLAYEMNGTELPRDHGFPVRVVVPGVVGARSVKWLRRVAVSPDESPSHWQQNDYKGFSPCVDWDTVD 241 (372)
T ss_dssp EEHHHHHCGGGCCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCSSEEEEEEESSCCCCHHHHSSSCCCCTTCCTTTCC
T ss_pred EEHHHHHCCCCCEEEEECCCCEECCCCCCCEEEEEECCHHHEEECCEEEEEEEECCCCCCCCEECCEEECCCCCCCCCCC
T ss_conf 39999757799999997879929981049607999443362441314208997346789941305615769988721045
Q ss_pred CCCCCCCCCCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCCCC
Q ss_conf 32332454331123020289960799982205766799859999999819996059999982899880573306999988
Q 002724 331 AEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHPEQPN 410 (888)
Q Consensus 331 ~~~~w~~~~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~a~l~~~~~~~ 410 (888)
| ++.++|++|++||+|++|.+++.++. ++|+|+||||||||++|+|||||+|||+||+.|+|..++.+
T Consensus 242 ----~-~~~~~i~~~~v~S~I~~P~~~~~v~~------g~~~v~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~~~~- 309 (372)
T 2a9d_A 242 ----Y-RTAPAIQELPVQSAVTQPRPGAAVPP------GELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAP- 309 (372)
T ss_dssp ----G-GGSCCCCBCCCEEEEEESCTTCEECS------EEEEEEEEEECSTTCCEEEEEEESBSSSSCEECEECSCCCC-
T ss_pred ----C-CCCCCCCCCCCCEEEECCCCCCEECC------CEEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCCCCC-
T ss_conf ----4-55762343444489854799998616------62999999995889788899997689995368175775556-
Q ss_pred CCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCC--CCCCCCCCCCCEEEEEEEEE
Q ss_conf 889600137669998532579942899998819999799987--64323566430699999995
Q 002724 411 KYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKL--IWNVMGMMNNCWFRVKANVC 472 (888)
Q Consensus 411 ~~g~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~--~wN~~G~~nN~~~~v~v~v~ 472 (888)
++++||||+|+++|++.+ .|+++|+|||||++||+||++. +||++|||||+||||+|+|.
T Consensus 310 -~~~~~~W~~W~~~~~~~~-g~~~~i~~RA~D~~g~~QP~~~~~~wn~~G~~~n~~~~v~v~v~ 371 (372)
T 2a9d_A 310 -PGRAWAWALWELTVPVEA-GTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHRVRVSVQ 371 (372)
T ss_dssp -TTCCCSCEEEEEEEEECT-TCEEEEEEEEEETTCCBCCSCSGGGCCTTCCCCCSCEEEEEEEC
T ss_pred -CCCCCEEEEEEEEEECCC-CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf -677417999888678699-98799999998388984888765771888742261899999993
No 5
>1ogp_A Sulfite oxidase; oxidoreductase, molybdenum cofactor, molybdopterin, peroxisomes, intramolecular electron transfer, oxidoreductas; HET: MTQ; 2.60A {Arabidopsis thaliana} SCOP: b.1.18.6 d.176.1.1
Probab=1.00 E-value=1 Score=804.79 Aligned_cols=363 Identities=33% Similarity=0.668 Sum_probs=331.6
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCEEEEEECCCCCEEECHHHHHHHCCCE
Q ss_conf 666978502148888988999101123888788996267458999976-8987199998504994121198883429982
Q 002724 92 IERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKA-SWVDWTIEVTGLVKRPARFTMDQLMHEFPSR 170 (888)
Q Consensus 92 ~~r~~~l~~~t~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~-d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~ 170 (888)
.+|++.|| ++++||||+|+|+..|. .++|||+++||||||+++|.+ |+++|+|+|+|+|++|++||++|| ++||++
T Consensus 14 ~~~~~~l~-~~~~~P~n~e~p~~~l~-~~~iTP~~~~yvr~h~~vP~i~d~~~w~L~V~G~V~~p~~ltl~dL-~~lp~~ 90 (393)
T 1ogp_A 14 PPRHPSLK-VNAKEPFNAEPPRSALV-SSYVTPVDLFYKRNHGPIPIVDHLQSYSVTLTGLIQNPRKLFIKDI-RSLPKY 90 (393)
T ss_dssp CCCCTTCE-EEETTTTEEECCHHHHT-SCSSCCGGGSCEECSSCCCEESCSTTCEEEEEESSSSCCEEEHHHH-HTSCEE
T ss_pred CCCCCCCE-ECCCCCCCCCCCHHHCC-CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEHHHH-HCCCCE
T ss_conf 88787733-75788998889967856-3774885211374489899548878659999737599748609998-568787
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCC----CEEEEEEEECCCCCCCCCCC
Q ss_conf 99799876158810012233335754477861020898212688998829985799----70199997057799999888
Q 002724 171 EFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKS----GALNVCFEGAEDLPGGGGSK 246 (888)
Q Consensus 171 ~~~~~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~----~a~~V~~~g~D~~~~~~~~~ 246 (888)
+++++|+|+||||++|++++++.|++|+.++|+|+.|+||+|+|||++||+++.+. +.+||+|+|+|.++.+.+.+
T Consensus 91 ~~~~~l~C~gN~r~~~~~~~~~~G~~W~~gai~~a~W~GV~L~dlL~~aG~~~~a~~~~~~~~~V~f~g~D~~~~~~~~~ 170 (393)
T 1ogp_A 91 NVTATLQCAGNRRTAMSKVRNVRGVGWDVSAIGNAVWGGAKLADVLELVGIPKLTASTNLGARHVEFVSVDRCKEENGGP 170 (393)
T ss_dssp EEEEEEECTTTTHHHHHHHSCCCSCCCCSCCEEEEEEEEEEHHHHHHTTTCCTTCSCCTTCCCEEEEEESCCCGGGTTCC
T ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEEHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
T ss_conf 99999994588633212235446766666644122688317999998629985545446764199999757556667898
Q ss_pred CCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCCCH
Q ss_conf 60767741125968982885020894588999981899904810000122405999884079961122056448987792
Q 002724 247 YGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHVDA 326 (888)
Q Consensus 247 Y~~sipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~~~ 326 (888)
|.+|||+++||++.+++||||+||||||+++|||||||||||++|+||||||++|+|+++++++|||.++|++||+++++
T Consensus 171 Y~~sipl~~al~~~~~vlLA~~mNGepL~~~hG~PlRLVvPg~~G~rsvKwL~~I~v~~~~~~~~w~~~~Y~~~p~~~~~ 250 (393)
T 1ogp_A 171 YKASITLSQATNPEADVLLAYEMNGETLNRDHGFPLRVVVPGVIGARSVKWLDSINVIAEESQGFFMQKDYKMFPPSVNW 250 (393)
T ss_dssp CEEEEEHHHHHCGGGCCEEEEEETTEECCTTTTTTCEEECTTSCGGGSCCSEEEEEEESSCCCCHHHHSSSCCCCTTCCT
T ss_pred EEEEEEHHHHHCCCCCEEEEECCCCEECCCCCCCEEEEEECCCCCCEEEEECCEEEEEECCCCCCCEECCCCCCCCCCCC
T ss_conf 58986999974878998999686991998102962799948621126411266899985678994144664225888871
Q ss_pred HHCCCCCCCCCCCCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCC
Q ss_conf 10023233245433112302028996079998220576679985999999981999605999998289988057330699
Q 002724 327 ELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLDHP 406 (888)
Q Consensus 327 ~~~~~~~~w~~~~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~a~l~~~ 406 (888)
+.+.. .+.++|++|++||+|++|.++++++. +.|+|+||||+|||++|+|||||+|||+||+.|+|.++
T Consensus 251 ~~~~~-----~~~~~i~~~~v~S~I~~P~~~~~v~~------g~~~v~G~A~sGgg~~I~rVEVS~DgG~tW~~A~l~~~ 319 (393)
T 1ogp_A 251 DNINW-----SSRRPQMDFPVQSAICSVEDVQMVKP------GKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQE 319 (393)
T ss_dssp TTCCG-----GGSCCCCSCCCEEEECSSCSEEEECS------EEEEEEEEEECSTTCCEEEEEEESSTTSSCEECEEESS
T ss_pred CCCCC-----CCCCEEEEECCCEEEECCCCCCEECC------CCEEEEEEEECCCCCCEEEEEEECCCCCCCEEEECCCC
T ss_conf 11567-----77743555256679967799898557------86899999994899888899997589997657463576
Q ss_pred C-CCC----CCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCC--CCCCCCCCCCCCEEEEEEEE
Q ss_conf 9-988----88960013766999853257994289999881999979998--76432356643069999999
Q 002724 407 E-QPN----KYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEK--LIWNVMGMMNNCWFRVKANV 471 (888)
Q Consensus 407 ~-~~~----~~g~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~--~~wN~~G~~nN~~~~v~v~v 471 (888)
+ +++ .++++||||+|+++|++. . +++|+|||||++||+||+. .+||++|||||+||||+|++
T Consensus 320 ~~~~~~~~~~~~~~~aW~~W~~~~~~~--~-~~~i~vRA~D~~gn~QP~~~~~~wN~~G~~~N~~~~v~v~~ 388 (393)
T 1ogp_A 320 PGKQYISEHSSSDKWAWVLFEATIDVS--Q-TTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRL 388 (393)
T ss_dssp SSSCCCSSSTTSCTTSCEEEEEEEEES--S-CEEEEEEEEETTCCBCCSCHHHHCCTTCCCCCCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECC--C-CEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 764322223368998788889998648--8-70999999869998488876576167774048778999978
No 6
>2blf_A SORA, sulfite\:cytochrome C oxidoreductase subunit A; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_A* 2c9x_A* 2ca3_A* 2ca4_A*
Probab=1.00 E-value=1 Score=779.71 Aligned_cols=359 Identities=26% Similarity=0.432 Sum_probs=324.6
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCCC-CCCCCCEEEEEECCCCCEEECHHHHH
Q ss_conf 97964666978502148888988999101123888788996267458-99997-68987199998504994121198883
Q 002724 87 TADNWIERNPSMVRLTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNH-GPVPK-ASWVDWTIEVTGLVKRPARFTMDQLM 164 (888)
Q Consensus 87 t~d~~~~r~~~l~~~t~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh-~~vP~-~d~~~w~l~V~G~v~~p~~ltl~dL~ 164 (888)
.+..|+||++.||+++ ++|||+|||+..| .+++|||+++|||||| +++|. +|.++|+|+|+|+|++|++||++||+
T Consensus 13 ~~~~~~p~~~~li~~~-~~p~n~e~p~~~l-~~~~iTP~~~~yvr~h~~~vP~~id~~~w~L~V~G~V~~p~~ltl~dL~ 90 (373)
T 2blf_A 13 RPLVMYPGKRPLIGLT-ARPPQLETPFSVF-DEGLITPNDAFFVRYHLAGIPLEIDPDAFRLEIKGKVGTPLSLSLQDLK 90 (373)
T ss_dssp EEEECCTTCCCEEEEE-TTTTEEECCGGGG-GSCSSCCGGGCCBCCSCSBCCCEECTTTCCEEEEESBSSCEEECHHHHH
T ss_pred CCCCCCCCCCCCEEEC-CCCCCCCCCHHHH-CCCCCCCHHHEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEHHHHH
T ss_conf 7444478997838816-8887678996891-7265388334589966777764147777599997075996587499986
Q ss_pred HHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 42998299799876158810012233335754477861020898212688998829985799701999970577999998
Q 002724 165 HEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAEDLPGGGG 244 (888)
Q Consensus 165 ~~~p~~~~~~~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~~a~~V~~~g~D~~~~~~~ 244 (888)
++||+++++++|+|+||||++| .+++.|++|+.|+|+++.|+||+|+|||++||++ .+++||+|+|+|.....+.
T Consensus 91 ~~lp~~~~~~~l~C~~N~R~~~--~~~~~G~~W~~gai~~~~W~GV~L~dlL~~ag~~---~~a~~V~~~~~D~~~~~~~ 165 (373)
T 2blf_A 91 NDFPASEVVAVNQCSGNSRGFV--EPRVGGGQLANGAMGNARWRGVPLKAVLEKAGVQ---AGAKQVTFGGLDGPVIPET 165 (373)
T ss_dssp HHSCCEEEEEEEECTTTTGGGC--SSCCSSCCCCSCSEEEEEEEEEEHHHHHHHHCBC---TTCCEEEEEESCBCSSTTS
T ss_pred CCCCCEEEEEEEEECCCCCCCC--CCCCCCCCCCCCCEEEEEEEEEEHHHHHHHCCCC---CCCCEEEEEECCCCCCCCC
T ss_conf 2289769999987046763112--4556677766565200079997899999863998---7884899996478777788
Q ss_pred CCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCCC
Q ss_conf 88607677411259689828850208945889999818999048100001224059998840799611220564489877
Q 002724 245 SKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSHV 324 (888)
Q Consensus 245 ~~Y~~sipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~~ 324 (888)
..|.+|||+++||++ ++||||+||||||+++||||+||||||++|+||||||++|+|+++++++|||..+||+ |...
T Consensus 166 ~~Y~~sipl~~a~~~--~~lLA~~mNGepL~~~hG~PlRlVvPg~~G~~svKwl~~I~v~~~~~~~~w~~~~Y~~-p~~~ 242 (373)
T 2blf_A 166 PDFVKALSIDHATDG--EVMLAYSMNGADLPWLNGYPLRLVVPGYYGTYWVKHLNEITVIDKEFDGFWMKTAYRI-PDNA 242 (373)
T ss_dssp CCCEEEEEHHHHTSS--CSEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCHHHHTSSEE-ESST
T ss_pred CCEEEEEEHHHHCCC--CEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCEECCEEEEEECCCCCCCEECCCCC-CCCC
T ss_conf 877999779996099--8799981589499710497359995473126444365489998567899413324025-8742
Q ss_pred CHHHCCCCCCCCCCCCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEEC
Q ss_conf 92100232332454331123020289960799982205766799859999999819996059999982899880573306
Q 002724 325 DAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLDGGDTWHVCTLD 404 (888)
Q Consensus 325 ~~~~~~~~~~w~~~~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~sGgg~~I~rVEVS~DgG~tW~~a~l~ 404 (888)
......+||.++.++|++|++||+|++|.++++++. ++|+|+||||+| |++|+|||||+|||+||+.|+|.
T Consensus 243 --~~~~~~~~~~~~~~~i~~~~v~S~I~~P~~~~~v~~------g~~~v~G~A~~G-g~~I~rVEVS~DgG~tW~~A~l~ 313 (373)
T 2blf_A 243 --CACTEPGKAPTATIPINRFDVRSFITNVENGASVKA------GEVPLRGIAFDG-GYGITQVSVSADAGKSWTNATLD 313 (373)
T ss_dssp --TCCCSTTCCCSSEEECCBCCCEEEECSCCTTEEECS------EEEEEEEEEECS-SSCEEEEEEESSTTSSCEECEEC
T ss_pred --CCCCCCCCCCCCCCCCEECCCCEEEEECCCCCEECC------CEEEEEEEEECC-CCCEEEEEEEECCCCCCEEEEEC
T ss_conf --223388986344642065256789971699999511------039999999859-99789999980899974684817
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 99998888960013766999853257994289999881999979998764323566430699999995
Q 002724 405 HPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKLIWNVMGMMNNCWFRVKANVC 472 (888)
Q Consensus 405 ~~~~~~~~g~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~~wN~~G~~nN~~~~v~v~v~ 472 (888)
.+. ..||||+|+++|+. ..|+++|+|||||++||+||+..+||++|||||+||||+|+|.
T Consensus 314 ~~~------~~~~W~~W~~~~~~--~~g~~~i~~RA~D~~g~~QP~~~~wn~~G~~~N~~~~v~v~v~ 373 (373)
T 2blf_A 314 PGL------GKYSFRGWKAVLPL--TKGDHVLMCRATNARGETQPMQATWNPAGYMRNVVEATRVIAA 373 (373)
T ss_dssp CCS------CTTSCEEEEEEEEE--CSEEEEEEEEEEETTSCCCCSSCCCCTTCCCCCCCEEEEEEEC
T ss_pred CCC------CCCEEEEEEEEEEC--CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 988------89869998998986--8982999999983888848886530656412275799999989
No 7
>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=1.00 E-value=1 Score=666.56 Aligned_cols=348 Identities=27% Similarity=0.398 Sum_probs=304.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEC-----C-CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEECCC
Q ss_conf 89898799796466697850214-----8-88898899910112388878899626745899997689871999985049
Q 002724 80 LDPRDEGTADNWIERNPSMVRLT-----G-KHPFNCEAPLTRLMQHGFITPVPLHYVRNHGPVPKASWVDWTIEVTGLVK 153 (888)
Q Consensus 80 ~~~~d~~t~d~~~~r~~~l~~~t-----~-~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~vP~~d~~~w~l~V~G~v~ 153 (888)
++....+.|+.+-. .++|.+ . ..+.|+|+|+..| .++|||+++||+|||+++|.+|.++|+|+|+|+|+
T Consensus 22 ~~~~~~g~~~~~~~---~~~r~~~~~~~~~~~~~~~~~p~~~l--~~~iTP~~~~y~r~h~~vP~id~~~w~L~V~G~V~ 96 (390)
T 2xts_A 22 VDAHPYGLPIHFES---HVKRQYVEWLTESPVSSINFTPIHAL--EGTITPQGCAFERHHSGAIELSKQDYRLMINGLVE 96 (390)
T ss_dssp TTSCSSCCCCGGGT---TSSCBCCGGGCSBTTBEECBCCTTTC--CSSCCCGGGSCCEESSCBCCCCTTTCCEEEEESBS
T ss_pred CCCCCCCCCCCCCC---CCEEECCCCCCCCCCCCCCCCCHHHC--CCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECC
T ss_conf 67776778876665---65661367654432365456982442--67768877437856898995678786999985769
Q ss_pred CCEEECHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 94121198883429982997998761588100122333357544778610208982126889988299857997019999
Q 002724 154 RPARFTMDQLMHEFPSREFPVTLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCF 233 (888)
Q Consensus 154 ~p~~ltl~dL~~~~p~~~~~~~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~~a~~V~~ 233 (888)
+|++||++||+ +||+++++++|+|+||+|++++. +++.|.||+.|+++|+.|+||+|+|||++||++ .+++||+|
T Consensus 97 ~p~~ltl~dL~-~lp~~~~~~~l~C~gn~r~~w~~-~~~~g~~w~~g~i~~~~W~GV~L~dlL~~ag~~---~~a~~V~~ 171 (390)
T 2xts_A 97 KPLVFTFEDLL-RFPRTTTTAFCECAANGGMEWGG-AQLEGCQYTQGMIHNMEYVGVPLSVLLAEAGVK---PEGKWLYA 171 (390)
T ss_dssp SCEEECHHHHT-TSCCEEEEEEEECTTTTGGGTTS-CCCSSHHHHHCSEEEEEEEEEEHHHHHHHHCBC---TTCCEEEE
T ss_pred CCEEECHHHHH-CCCCEEEEEEEEECCCCCCCCCC-CCCCCCCCCCCCEEEEEEEEEEHHHHHHHCCCC---CCCEEEEE
T ss_conf 97387199985-68888999999835886332244-444554313574542089978999999753999---88669999
Q ss_pred EECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEE
Q ss_conf 70577999998886076774112596898288502089458899998189990481000012240599988407996112
Q 002724 234 EGAEDLPGGGGSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYH 313 (888)
Q Consensus 234 ~g~D~~~~~~~~~Y~~sipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~ 313 (888)
+|+|. ..|.+|||+++||+ ++||||+||||||+++|||||||||||+||+||||||++|+|+++++++||+
T Consensus 172 ~~~Dg------~~y~~sipl~~a~~---~~lLA~~mNGepL~~~hG~PlRLVvPg~~G~~svKwl~~I~v~~~~~~~~~~ 242 (390)
T 2xts_A 172 EGADA------SSNGRSFPMEKVMD---DVMLAFFANGEALRKEHGYPARLVVPGWEGNMWVKWVRRLGIYDKAVESREE 242 (390)
T ss_dssp EESST------TCCCEEEEHHHHHH---HCEEEEEETTEECCGGGTTTCEEECTTBCGGGSCBSEEEEEEESSCCCCGGG
T ss_pred EECCC------CEEEEEEEHHHHHC---CCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCEECCEEEEEECCCCCCHH
T ss_conf 94589------80789989999730---7699982789499734797169996675586612155479998367898244
Q ss_pred EECCCCCCCCCCHHHCCCCCCCCCCCCCCCCEEECEEEEECCCCCEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEC
Q ss_conf 20564489877921002323324543311230202899607999822057667998599999998199960599999828
Q 002724 314 YKDNRVLPSHVDAELANAEAWWYKPEYIINELNINSVITTPCHEEILPINSWTAQRPYTLRGYAYSGGGKKVTRVEVTLD 393 (888)
Q Consensus 314 ~~d~r~~p~~~~~~~~~~~~~w~~~~~~i~~~~vnS~I~~P~~~e~~~~~~~~~~~~~~i~G~A~sGgg~~I~rVEVS~D 393 (888)
..+|+.+++..+ +.+.+++|||||+|+.|.+++.++++ .+.|+|+||||+|+| +|+|||||+|
T Consensus 243 ~~~y~~~~~~~~------------~~~~~~~~~vnS~I~~P~~~~~i~~~----~g~~~v~G~A~~G~g-~I~rVevS~D 305 (390)
T 2xts_A 243 TSKYTDLMPDGR------------ARKWTWVMDAKSVITSPSPQVPIRHG----KGPLVISGLAWSGNG-RITRVDVSLD 305 (390)
T ss_dssp TTSSCEECTTSC------------EEECCCBCCCEEEEEESBTTBCCCSC----SEEEEEEEEEECTTS-CEEEEEEESB
T ss_pred HCCCCCCCCCCC------------CCCCCEEECCCEEEECCCCCCEEECC----CCCEEEEEEEECCCC-CEEEEEEECC
T ss_conf 125533489987------------42131232376315168998886038----984799899976998-6899998059
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCC-CCCC----CCCCCCCEEEEE
Q ss_conf 99880573306999988889600137669998532579942899998819999799987-6432----356643069999
Q 002724 394 GGDTWHVCTLDHPEQPNKYGKYWCWCFWSLELEVLDLLGAKDIAVRAWDETLNTQPEKL-IWNV----MGMMNNCWFRVK 468 (888)
Q Consensus 394 gG~tW~~a~l~~~~~~~~~g~~w~W~~W~~~~~~~~~~g~~~i~vRA~D~~g~~QP~~~-~wN~----~G~~nN~~~~v~ 468 (888)
||+||+.|+|.+++.+ |||+.|++.|... .|+++|+|||||++||+||+.. +||+ .||+||+|++++
T Consensus 306 gG~tW~~A~L~~~~~~------~aw~~w~~~~~~~--~g~~~i~vRA~D~~gn~QP~~~~~~~~~g~~~gy~~n~i~~~~ 377 (390)
T 2xts_A 306 GGKNWTTARITGQALP------KALTRFHLDIDWD--GSEMLLQSRAVDETGYVQPTKDALRAIRGRNNVYHNNGIQTWW 377 (390)
T ss_dssp TTSSCEECEEESCCCT------TSCEEEEEEEEEC--SCCEEEEEEEEETTCCBCCCHHHHHHHHCSCCCSCCCCCCEEE
T ss_pred CCCCEEEEECCCCCCC------CCEEEEEEEEECC--CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9995788364588788------8417999999747--8702899999848898388866454457665513333589999
Q ss_pred EEE
Q ss_conf 999
Q 002724 469 ANV 471 (888)
Q Consensus 469 v~v 471 (888)
|..
T Consensus 378 v~~ 380 (390)
T 2xts_A 378 VKA 380 (390)
T ss_dssp ECT
T ss_pred ECC
T ss_conf 832
No 8
>1xdy_A Bacterial sulfite oxidase; bioinformatics, sequence analysis, electron transfer, oxidoreductase, molybdoenzymes, molybdopterin; HET: MTE; 2.20A {Escherichia coli} SCOP: d.176.1.1 PDB: 1xdq_A*
Probab=1.00 E-value=1 Score=403.94 Aligned_cols=247 Identities=21% Similarity=0.326 Sum_probs=206.0
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCC------CCCCCCCCCEEEEEECCCCCEEECHHHHHHHCCCEEEEE
Q ss_conf 14888898899910112388878899626745899------997689871999985049941211988834299829979
Q 002724 101 LTGKHPFNCEAPLTRLMQHGFITPVPLHYVRNHGP------VPKASWVDWTIEVTGLVKRPARFTMDQLMHEFPSREFPV 174 (888)
Q Consensus 101 ~t~~~P~n~E~p~~~l~~~~~iTP~~~~yvrnh~~------vP~~d~~~w~l~V~G~v~~p~~ltl~dL~~~~p~~~~~~ 174 (888)
....+|||+|+|+.. .++|||+++||+|||++ +|.+|.++|+|+|+|+|++|++||++||+++||++++++
T Consensus 22 ~~~~~~~~~~~~~t~---~~~iT~~~~fY~~~~~~~~p~~~~~~id~~~w~L~V~G~V~~p~~ltl~dL~~~lP~~e~~~ 98 (298)
T 1xdy_A 22 FSKPAAWQNNLPLTP---ADKVSGYNNFYEFGLDKADPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIY 98 (298)
T ss_dssp CBCCGGGCCCCCCCC---HHHHTTSCCCGGGCSSTTHHHHHGGGSCCSSCEEEEEESBSSCEEEEHHHHHHTSCCEEEEE
T ss_pred CCCCCCCCCCCCCCC---HHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEHHHHHCCCCCEEEEE
T ss_conf 677888877999895---88757777807806776772114675668873999961338972866999860389769999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEEECCC---CCCCC--------
Q ss_conf 9876158810012233335754477861020898212688998829985799701999970577---99999--------
Q 002724 175 TLVCAGNRRKEQNMVKQTIGFNWGAAGVSTSVWRGVPLRHVLKRCGIFSRKSGALNVCFEGAED---LPGGG-------- 243 (888)
Q Consensus 175 ~l~Cagn~r~e~~~~~~~~G~~Wg~~~i~~a~W~Gv~L~dvL~~ag~~~~~~~a~~V~~~g~D~---~~~~~-------- 243 (888)
+++|+++ |+. ++.|+||+|+|||++||++ .+|+||.|+|+|+ ++++.
T Consensus 99 ~l~Cv~~---------------Ws~----~~~W~GV~L~dLL~~aG~~---~~A~~V~f~~~dd~~~~~G~~~~~~~~~~ 156 (298)
T 1xdy_A 99 RMRCVEA---------------WSM----VVPWIGFPLHKLLALAEPT---SNAKYVAFETIYAPEQMPGQQDRFIGGGL 156 (298)
T ss_dssp EEEETTT---------------EEE----EEEEEEEEHHHHHHHHCBC---TTCCEEEEEECCCTTTCGGGTCTTTTTTC
T ss_pred EEEECCC---------------CCC----EEEEEEEEHHHHHHHCCCC---CCCEEEEEEECCCHHCCCCCCCCCCCCCC
T ss_conf 9994699---------------810----2699967999999973999---88709999957870006675444334456
Q ss_pred CCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCC
Q ss_conf 88860767741125968982885020894588999981899904810000122405999884079961122056448987
Q 002724 244 GSKYGTSIRKEVGMDPARDIILAYMQNGELLSPDHGFPVRVIIPGCIGGRMVKWLKRIIVTTQESDNYYHYKDNRVLPSH 323 (888)
Q Consensus 244 ~~~Y~~sipl~~a~~~~~dvlLAy~~NGepL~~dhG~PlRlvvPg~~G~r~vKWl~~I~v~~~~~~~~~~~~d~r~~p~~ 323 (888)
..+|.++||+++||++ ++||||+|||||||++||||+||||||+||+||||||++|+|+++++++||+..+|+...-
T Consensus 157 ~~~Y~~slpl~~a~~~--~~lLA~~mNGepLp~~hG~PlRLVVPg~yG~ksvKwl~~Iev~~~~~~g~We~~~y~~yg~- 233 (298)
T 1xdy_A 157 KYPYVEGLRLDEAMHP--LTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGF- 233 (298)
T ss_dssp CSSCEEEEEHHHHHST--TCEEEEEETTEECCGGGTCSCEEECTTBCGGGSCCSEEEEEEESSCCCCHHHHHCTTTCCS-
T ss_pred CCCEEEEEEHHHHCCC--CEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCEECCEEEEEECCCCCCHHHCCCCCCCC-
T ss_conf 7774887799996489--9799975499299700497159990780022723046589999578999164257632476-
Q ss_pred CCHHHCCCCCCCCCCCCCCCCEEECEEEEEC----CCCCEECCCCCCCCC---CEEEEEEEEECCCCEEEEEEEEECCCC
Q ss_conf 7921002323324543311230202899607----999822057667998---599999998199960599999828998
Q 002724 324 VDAELANAEAWWYKPEYIINELNINSVITTP----CHEEILPINSWTAQR---PYTLRGYAYSGGGKKVTRVEVTLDGGD 396 (888)
Q Consensus 324 ~~~~~~~~~~~w~~~~~~i~~~~vnS~I~~P----~~~e~~~~~~~~~~~---~~~i~G~A~sGgg~~I~rVEVS~DgG~ 396 (888)
..|+||.|..| +.+..+.. ++ ..++..++|.|.|..|++++.++|.++
T Consensus 234 --------------------~~n~n~~v~~P~w~q~~er~i~~-----g~~~~~~r~~t~~fnGy~~~va~ly~~md~~~ 288 (298)
T 1xdy_A 234 --------------------YANVNPYVDHPRWSQATERFIGS-----GGILDVQRQPTLLFNGYADQVASLYRGLDLRE 288 (298)
T ss_dssp --------------------SCBCCTTSCBTTBCCSEEEECCC-----C------CEECCGGGGTHHHHHHHHTTCCC--
T ss_pred --------------------CCCCCCCCCCCCCCCCCEEEECC-----CCCEEECCCCCEEECCCHHHHHHHHHCCCCCH
T ss_conf --------------------55788778898625443028757-----87311035576654564887664650866524
Q ss_pred CCEE
Q ss_conf 8057
Q 002724 397 TWHV 400 (888)
Q Consensus 397 tW~~ 400 (888)
....
T Consensus 289 ~~~~ 292 (298)
T 1xdy_A 289 NFLE 292 (298)
T ss_dssp ----
T ss_pred HHHH
T ss_conf 4444
No 9
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=1.00 E-value=1 Score=303.13 Aligned_cols=249 Identities=46% Similarity=0.893 Sum_probs=216.9
Q ss_pred CCCEECCCCCEEEEEEEEEEEECCCEEEEEECCCC--------CCCEEEEE------EEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 88200278971609999999843760132631699--------99367520------00122102657998758999999
Q 002724 638 TRSVALVPREKIPCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVK 703 (888)
Q Consensus 638 ~~~v~l~p~~~~~~kLv~k~~is~dv~~f~f~lp~--------pgQ~l~Lp------~~~R~YTi~s~~~e~g~i~L~IK 703 (888)
....+|+|..+..++|++++.++++++.|+|.++. ||||+.|. ...|+|||+|.+.+.+.++|+||
T Consensus 6 ~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk 85 (275)
T 1umk_A 6 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIK 85 (275)
T ss_dssp CCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 77544587761779999999908995899998599633168898758999973099278745445786677986999999
Q ss_pred EEEECCCCCCCCCCHHCHHHHCCCCCCEEEEECCCCCEEECCCCCEEECCC------CCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 986148997799992208875299999999982003325537885010599------89996199999796888999999
Q 002724 704 IYFKGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGK------PKFAKKLAMLAGGTGITPIYQIM 777 (888)
Q Consensus 704 ~y~~~~~~~~P~gG~~S~~L~~L~~Gd~I~IkGP~G~f~~~g~g~~~~~~~------~~~~~~ivlIAGGTGITPi~qll 777 (888)
.+....++.++.+|.+|++|+++++|+.|.|.||+|.|.+.++|.|.+... ....++++||||||||||+++++
T Consensus 86 ~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGIaP~~~~l 165 (275)
T 1umk_A 86 VYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVI 165 (275)
T ss_dssp CCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGHHHHHHHH
T ss_pred EECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 82267655659998467898519999989997682232754776522244334445556776599994685575899999
Q ss_pred HHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCE
Q ss_conf 999809999953999996279733556999999998199-8599999942335785320034678889710899999939
Q 002724 778 QAILKDPEDETEMYVVYANRTEDDILLREELDDWAKKHD-RVKVWYVVEKSIKEGWQYSTGFITEAILREHVPEGSGDTL 856 (888)
Q Consensus 778 ~~ll~~~~d~~~i~Li~anRt~~Dil~~deL~~l~~~~~-~f~v~~~~s~~~~~~w~~~~Gri~~~~L~~~l~~~~~~~~ 856 (888)
++++.......+++|+|++|+.+|+++++||++++++++ +++++++++++ .++|.+..|++++.++++.+....++..
T Consensus 166 ~~l~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~~~~~g~v~~~~l~~~l~~~~~~~~ 244 (275)
T 1umk_A 166 RAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRA-PEAWDYGQGFVNEEMIRDHLPPPEEEPL 244 (275)
T ss_dssp HHHHTCTTCCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSC-CSSCSSEESSCCHHHHHHHSCCGGGCCE
T ss_pred HHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCCCCCCCHHHHHHHCCCCCCCEE
T ss_conf 999858999968999998198898437999999997593758999998688-7555676683299999976699778759
Q ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCEEEC
Q ss_conf 99998856499999999995699999997989
Q 002724 857 ALACGPPPMIQFAVQPNLEKMNYDTKDSLLVF 888 (888)
Q Consensus 857 vlICGPp~mi~~av~~~L~~lGv~~~~~I~~f 888 (888)
+|+|||++|++.+++..|.++|++ +++|++|
T Consensus 245 vyvCGp~~m~~~~v~~~L~~~G~~-~~~I~~f 275 (275)
T 1umk_A 245 VLMCGPPPMIQYACLPNLDHVGHP-TERCFVF 275 (275)
T ss_dssp EEEESCHHHHHHTTHHHHHHHTCC-GGGEEEC
T ss_pred EEEECCHHHHHHHHHHHHHHCCCC-HHHEEEC
T ss_conf 999899999999999999983999-8997869
No 10
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=1.00 E-value=1 Score=298.10 Aligned_cols=245 Identities=69% Similarity=1.210 Sum_probs=210.6
Q ss_pred EC-CCCCEEEEEEEEEEEECCCEEEEEECCCC--------CCCEEEEE------EEEEEEECCCCCCCCCEEEEEEEEEE
Q ss_conf 02-78971609999999843760132631699--------99367520------00122102657998758999999986
Q 002724 642 AL-VPREKIPCKLVEKILISHDVRLFRFALPQ--------EDQVLGLP------LCMRAYTPTSSVDEVGHFDLVVKIYF 706 (888)
Q Consensus 642 ~l-~p~~~~~~kLv~k~~is~dv~~f~f~lp~--------pgQ~l~Lp------~~~R~YTi~s~~~e~g~i~L~IK~y~ 706 (888)
+| +|.++..++|++++.++++++.|+|+.+. ||||+.|. ...|+|||+|.+.+.+.++|+||.++
T Consensus 5 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~ 84 (270)
T 2cnd_A 5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYF 84 (270)
T ss_dssp ------CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCC
T ss_pred CCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEC
T ss_conf 46799823899999989957990899997899744069888788999961189688876436787667987999999711
Q ss_pred ECCCCCCCCCCHHCHHHHCCCCCCEEEEECCCCCEEECCCCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCC-CC
Q ss_conf 14899779999220887529999999998200332553788501059989996199999796888999999999809-99
Q 002724 707 KGVHPKFPNGGLMSQYLDSLSVGSILDVKGPLGHIQYTGRGNFLVHGKPKFAKKLAMLAGGTGITPIYQIMQAILKD-PE 785 (888)
Q Consensus 707 ~~~~~~~P~gG~~S~~L~~L~~Gd~I~IkGP~G~f~~~g~g~~~~~~~~~~~~~ivlIAGGTGITPi~qll~~ll~~-~~ 785 (888)
++.+++.|++|.+|++|+++++|+.|.+.||+|+|.+.++|.|.++......++++||||||||||+++++++++.. +.
T Consensus 85 ~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~ 164 (270)
T 2cnd_A 85 KNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPE 164 (270)
T ss_dssp SSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCEECCCCCEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 67666669997214677459998999997785661214665133157766677799996260188999999999852988
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECC--CCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 995399999627973355699999999819-985999999423--35785320034678889710899999939999988
Q 002724 786 DETEMYVVYANRTEDDILLREELDDWAKKH-DRVKVWYVVEKS--IKEGWQYSTGFITEAILREHVPEGSGDTLALACGP 862 (888)
Q Consensus 786 d~~~i~Li~anRt~~Dil~~deL~~l~~~~-~~f~v~~~~s~~--~~~~w~~~~Gri~~~~L~~~l~~~~~~~~vlICGP 862 (888)
...+++|+|++|+.+|+++++||+++++++ .++++++++++. .+++|.+..|++++.++++.++....+..+|+|||
T Consensus 165 ~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~~l~~~~~~~~vyvCGp 244 (270)
T 2cnd_A 165 DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDTLALACGP 244 (270)
T ss_dssp CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHHHSCCCSSSEEEEEECC
T ss_pred CCCEEEEEEECCCHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECC
T ss_conf 89679999971898993129999999987867579999987777787776530110799999976699868879999899
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 5649999999999569999999798
Q 002724 863 PPMIQFAVQPNLEKMNYDTKDSLLV 887 (888)
Q Consensus 863 p~mi~~av~~~L~~lGv~~~~~I~~ 887 (888)
++||+.+++..|+++|++ +++|++
T Consensus 245 ~~m~~~~~~~~L~~~G~~-~~~i~~ 268 (270)
T 2cnd_A 245 PPMIQFAISPNLEKMKYD-MANSFV 268 (270)
T ss_dssp HHHHHTTTHHHHHTTTCC-HHHHEE
T ss_pred HHHHHHHHHHHHHHCCCC-HHHCEE
T ss_conf 899999999999885998-356478
Done!