BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002728
(887 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 107 bits (267), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 90/177 (50%), Gaps = 31/177 (17%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA G+ + L+ G+D N D++GRT LH AA GH+ V LL+ GAD+N +DS+G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 609 SVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQL 668
PL A H+ +V++L GA +++ D
Sbjct: 71 RTPLHYAAKEGHKEIVKLLISKGADVNAKD------------------------------ 100
Query: 669 TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
S+G TPLH A EG+ EIVK LI +G+D++ D G TP LA G E+I LL+
Sbjct: 101 -SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 31/150 (20%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +AA G ++ L+ +G+D N D++GRT LH AA GH+ V LL+ GAD+N +D
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 100
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
S+G PL A H+ +V++L GA +++SD
Sbjct: 101 SDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD--------------------------- 133
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695
S+G TPL +A GN EIVK L QG
Sbjct: 134 ----SDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 31/146 (21%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G++ V L+E GAD+N DS+G PL A H+ +V++L GA +++ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD--- 67
Query: 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
S+G TPLH A EG+ EIVK LI +G+D++
Sbjct: 68 ----------------------------SDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 99
Query: 702 DIHGWTPRALADHQGQEDIQILLQMK 727
D G TP A +G ++I LL K
Sbjct: 100 DSDGRTPLHYAAKEGHKEIVKLLISK 125
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%)
Query: 637 SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
S++G A E + ++ ++ G DV S+G TPLH A EG+ EIVK LI +G+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 697 DIDKPDIHGWTPRALADHQGQEDIQILLQMK 727
D++ D G TP A +G ++I LL K
Sbjct: 62 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/177 (35%), Positives = 89/177 (50%), Gaps = 31/177 (17%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA G+ + L+ G+D N D++GRT LH AA GH+ V LL+ GAD+N +DS+G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 609 SVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQL 668
PL A H+ VV++L GA +++ D
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKD------------------------------ 100
Query: 669 TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
S+G TPLH A G+ E+VK LI +G+D++ D G TP LA G E++ LL+
Sbjct: 101 -SDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 31/150 (20%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G ++ L+ +G+D N D++GRT LH AA GH+ V LL+ GAD+N +D
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 100
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
S+G PL A H+ VV++L GA +++SD
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTSD--------------------------- 133
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695
S+G TPL +A GN E+VK L QG
Sbjct: 134 ----SDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 31/146 (21%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G++ V L+E GAD+N DS+G PL A H+ VV++L GA +++ D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD--- 67
Query: 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
S+G TPLH A G+ E+VK LI +G+D++
Sbjct: 68 ----------------------------SDGRTPLHHAAENGHKEVVKLLISKGADVNAK 99
Query: 702 DIHGWTPRALADHQGQEDIQILLQMK 727
D G TP A G +++ LL K
Sbjct: 100 DSDGRTPLHHAAENGHKEVVKLLISK 125
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 637 SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
S++G A E + ++ ++ G DV S+G TPLH A G+ E+VK LI +G+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 697 DIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKAPVLT--VPKKQQAPNPRKHLVK 753
D++ D G TP A G +++ LL K A P A N K +VK
Sbjct: 62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 120
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 103 bits (256), Expect = 6e-22, Method: Composition-based stats.
Identities = 65/177 (36%), Positives = 87/177 (49%), Gaps = 31/177 (17%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA G+ + LL G+DPN D++GRT LH AA GH+ V LLL GAD N +DS+G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 609 SVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQL 668
PL A H+ +V++L GA ++ D
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKD------------------------------ 100
Query: 669 TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
S+G TPLH A G+ EIVK L+ +G+D + D G TP LA G E+I LL+
Sbjct: 101 -SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/150 (37%), Positives = 74/150 (49%), Gaps = 31/150 (20%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +AA G ++ LL +G+DPN D++GRT LH AA GH+ V LLL GAD N +D
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 100
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
S+G PL A H+ +V++L GA ++SD
Sbjct: 101 SDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD--------------------------- 133
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695
S+G TPL +A GN EIVK L QG
Sbjct: 134 ----SDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 637 SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
S++G A E + ++ ++ G D S+G TPLH A G+ EIVK L+ +G+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 697 DIDKPDIHGWTPRALADHQGQEDIQILLQMK---PEPKKAPVLTVPKKQQAPNPRKHLVK 753
D + D G TP A G ++I LL K P K + T P A N K +VK
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT-PLHYAAENGHKEIVK 120
Query: 754 YSSEPSIPPYTPEVVSAVPEINLLNRH 780
P T + P ++L H
Sbjct: 121 LLLSKGADPNTSDSDGRTP-LDLAREH 146
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 63/177 (35%), Positives = 88/177 (49%), Gaps = 31/177 (17%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA G+ + LL G+D N D++G+T LH+AA GH+ V LLL GAD N +DS+G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 609 SVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQL 668
PL A H+ VV++L GA ++ D
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKD------------------------------ 100
Query: 669 TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
S+G TPLH+A G+ E+VK L+ QG+D + D G TP LA G E++ LL+
Sbjct: 101 -SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 31/150 (20%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G ++ LL +G+DPN D++G+T LH+AA GH+ V LLL GAD N +D
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 100
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
S+G PL A H+ VV++L GA ++SD
Sbjct: 101 SDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD--------------------------- 133
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695
S+G TPL +A GN E+VK L QG
Sbjct: 134 ----SDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 3/146 (2%)
Query: 637 SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
S++G A E + ++ ++ G DV S+G TPLH+A G+ E+VK L+ QG+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 697 DIDKPDIHGWTPRALADHQG-QEDIQILLQMKPEPK-KAPVLTVPKKQQAPNPRKHLVKY 754
D + D G TP LA G +E +++LL +P K P A N K +VK
Sbjct: 62 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 755 SSEPSIPPYTPEVVSAVPEINLLNRH 780
P T + P ++L H
Sbjct: 122 LLSQGADPNTSDSDGRTP-LDLAREH 146
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 9/134 (6%)
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVG-----HFACTAIEQNDLLLLEKIVH 660
SE L EA ++ V+ L ENGA +++SD H A E +++ ++
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAA---ENGHKEVVKLLLS 58
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQG-QED 719
G D S+G TPLH+A G+ E+VK L+ QG+D + D G TP LA G +E
Sbjct: 59 QGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV 118
Query: 720 IQILLQMKPEPKKA 733
+++LL +P +
Sbjct: 119 VKLLLSQGADPNTS 132
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 95.9 bits (237), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA GH V +LL+ GAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N +D +G PL A H +V +L + GA +++ D
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------------------- 98
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+G TPLH+A EG++EIV+ L+ G+D++ D G TP LA +G EDI
Sbjct: 99 ---------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 721 QILLQ 725
+LQ
Sbjct: 150 AEVLQ 154
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA GH V +LL+ GAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N +D +G PL A H +V +L + GA +++ D
Sbjct: 61 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------------------- 98
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+G TPLH+A EG++EIV+ L+ G+D++ D G TP LA G EDI
Sbjct: 99 ---------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 721 QILLQ 725
+LQ
Sbjct: 150 AEVLQ 154
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 78/153 (50%), Gaps = 32/153 (20%)
Query: 574 NGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL 633
NGRT LH+AA GH V LLLE GAD+N +D G PL A H VV++L E GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 634 ISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693
+++ D NG TPLH+A G++E+VK L++
Sbjct: 61 VNAKD-------------------------------KNGRTPLHLAARNGHLEVVKLLLE 89
Query: 694 QGSDIDKPDIHGWTPRALADHQGQ-EDIQILLQ 725
G+D++ D +G TP LA G E +++LL+
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 73/151 (48%), Gaps = 31/151 (20%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G ++ LL G+D N D NGRT LH+AA GH V LLLE GAD+N +D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
G PL A H VV++L E GA +++ D
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD--------------------------- 98
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
NG TPLH+A G++E+VK L++ G+
Sbjct: 99 ----KNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 46/103 (44%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 530 DTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEH 589
D K GR L L AA G ++ LL G+D N D NGRT LH+AA GH
Sbjct: 27 DVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
Query: 590 CVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGA 632
V LLLE GAD+N +D G PL A H VV++L E GA
Sbjct: 83 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D+ G T LH+AA GH V +LL++GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N RD++G PL A +D GH L ++E ++
Sbjct: 73 VNARDTDGWTPLHLA---------------------ADNGH----------LEIVEVLLK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
YG DV + G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 YGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D++G+T LH+AA +GH V +LL++GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D G PL A L H +V +L +NGA ++++D
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD---------------------- 110
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+ G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 111 ---------TYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D+NG T LH+AA+ G V +LL+ GAD
Sbjct: 5 DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N DS G PL A H +V +L ++GA
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLLKHGA---------------------------- 96
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
DV G TPLH+A G +EIV+ L+ G+D++ D G T ++ +QGQED+
Sbjct: 97 ---DVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 721 QILLQ 725
+LQ
Sbjct: 154 AEILQ 158
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 89.4 bits (220), Expect = 8e-18, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N DN G T LH+AA GH V +LL++GAD
Sbjct: 13 DLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
++ D G PL A H +V +L +NGA
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA---------------------------- 104
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
DV + S+G TPLH+A G +EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 105 ---DVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N DN+G T LH+AAS GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D G PL A H +V +L ++GA
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGA---------------------------- 104
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
DV ++G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 105 ---DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 89.0 bits (219), Expect = 1e-17, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N +DS G PL A H +V +L +NGA +++SD
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD---------------------- 110
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
S+G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 111 ---------SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 31/180 (17%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N +DN G T LH+AA GH V +LL++GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
++ D G PL A + H +V +L +
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVL-------------------------------LK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
YG DV G+TPLH+A EG++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 59.3 bits (142), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 658 IVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQ 717
++ G DV + + G TPLH+A G++EIV+ L+ G+D+D D++G+TP LA G
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 718 -EDIQILLQ 725
E +++LL+
Sbjct: 93 LEIVEVLLK 101
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N +D +G PL A H +V +L + GA +++ D
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD---------------------- 110
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+G TPLH+A EG++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 111 ---------KDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 87.0 bits (214), Expect = 4e-17, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA+ GH V +LL++GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D GS PL A L +GH L ++E ++
Sbjct: 73 VNAIDIXGSTPLHLAAL---------------------IGH----------LEIVEVLLK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+G DV + + G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 91/185 (49%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA+ GH V +LL++GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D GS PL A L +GH L ++E ++
Sbjct: 73 VNAIDIMGSTPLHLAAL---------------------IGH----------LEIVEVLLK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+G DV + + G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 86.3 bits (212), Expect = 6e-17, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D+ GRT LH+AA+ GH V +LL GAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D+ G+ PL A + +GH L ++E ++
Sbjct: 61 VNAVDTNGTTPLHLA---------------------ASLGH----------LEIVEVLLK 89
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
YG DV + G TPL++A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 90 YGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 721 QILLQ 725
+LQ
Sbjct: 150 AEILQ 154
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 86.3 bits (212), Expect = 7e-17, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D+ GS PL A H +V +L +NGA +++ D
Sbjct: 73 VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD---------------------- 110
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
NG TPLH+A + G++EIV+ L+ G+D++ D G T ++ + G ED+
Sbjct: 111 ---------DNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+AA GH V +LL+YGAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D+ G+ PL A +D GH L ++E ++
Sbjct: 73 VNAWDNYGATPLHLA---------------------ADNGH----------LEIVEVLLK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
+G DV G TPLH+A +G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D+ G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N DS G PL A H VV +L +NGA ++++D
Sbjct: 73 VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND---------------------- 110
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
NG TPLH+A + G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 111 ---------HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D G PL A L H +V +L +NGA ++++D+
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM--------------------- 111
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
G TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 112 ----------EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 83.2 bits (204), Expect = 6e-16, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D GS PL H A ++ L ++E ++
Sbjct: 73 VNALDFSGSTPL----------------------------HLAA---KRGHLEIVEVLLK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
YG DV + G+TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 80.9 bits (198), Expect = 3e-15, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 31/185 (16%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+ + GH + +LL+Y AD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N D G PL A H +V +L +
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVL-------------------------------LK 101
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
YG DV + G TPLH+A +G++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 102 YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 721 QILLQ 725
+LQ
Sbjct: 162 AEILQ 166
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 81/167 (48%), Gaps = 4/167 (2%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LL RG P+ NG T LHIAA + LL+YG N +G PL A H
Sbjct: 198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 257
Query: 621 EPVVRIL---AENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLH 677
+V +L NG L + S + A ++ + + + ++ +G V T G TPLH
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVA-QEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 678 VAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
VA GNI++VKFL+ +D++ G++P A QG DI LL
Sbjct: 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 2/184 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G ++ LL ++PN G T LHIAA GH V+ LLE A
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFA--CTAIEQNDLLLLEKIVHYGG 663
+G PL A V +L E A +++ A+ N+L +++ ++ GG
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 664 DVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQIL 723
NG TPLH+A + +E+ + L+ G + + G TP LA +G ++ L
Sbjct: 204 SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL 263
Query: 724 LQMK 727
L K
Sbjct: 264 LLSK 267
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 92/210 (43%), Gaps = 35/210 (16%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L A+ G ++ LL+RG+ PN + T LH+AA GH LL+ A +N +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALIS-SSDVGH--FACTAIE---QNDLLLLEK-- 657
+ PL A H +V++L EN A + ++ GH A E + L LLEK
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 658 ---------------IVHYGG-DVTQL-----------TSNGTTPLHVAISEGNIEIVKF 690
YG V +L NG TPLHVA+ N++IVK
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 691 LIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
L+ +G P +G+TP +A Q Q ++
Sbjct: 198 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 577 TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISS 636
T LH+A+ GH V LL+ GA N+ + + PL A H V + L +N A +++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 637 S---DVGHFACTA-IEQNDL--LLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKF 690
D C A I ++ LLLE + T+ G TPLH+A EG++E V
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLEN----NANPNLATTAGHTPLHIAAREGHVETVLA 131
Query: 691 LIDQGSDIDKPDIHGWTPRALADHQGQEDI-QILLQMKPEPKKA 733
L+++ + G+TP +A G+ + ++LL+ P A
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA 175
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 76.6 bits (187), Expect = 6e-14, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 31/123 (25%)
Query: 574 NGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL 633
NGRT LH+AA GH V LLLE GAD+N +D G PL A H VV++L E GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 634 ISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693
+++ D NG TPLH+A G++E+VK L++
Sbjct: 61 VNAKD-------------------------------KNGRTPLHLAARNGHLEVVKLLLE 89
Query: 694 QGS 696
G+
Sbjct: 90 AGA 92
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 49/87 (56%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G ++ LL G+D N D NGRT LH+AA GH V LLLE GAD+N +D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGA 632
G PL A H VV++L E GA
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A L +++ ++ G DV NG TPLH+A G++E+VK L++ G+D++ D +G
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 706 WTPRALADHQGQ-EDIQILLQ 725
TP LA G E +++LL+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLE 89
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 671 NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILLQ 725
NG TPLH+A G++E+VK L++ G+D++ D +G TP LA G E +++LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 56
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLE 596
R D +L +A G ++ LL+ G N+ D+ G + LHIAAS G + V LL
Sbjct: 36 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG 95
Query: 597 YGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE----QND 651
GA +N + G PL + A +HE V +L E GA + D H+ TA+ + +
Sbjct: 96 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKD--HYEATAMHRAAAKGN 152
Query: 652 LLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRAL 711
L ++ +++Y + G TPLH+A E +E K L+ QG+ I + TP +
Sbjct: 153 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 212
Query: 712 A 712
A
Sbjct: 213 A 213
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 67/172 (38%), Gaps = 32/172 (18%)
Query: 557 LLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616
L +L S D + RTALH A S GH V LL+ G +N +D G PL A
Sbjct: 23 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 82
Query: 617 LGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPL 676
+ +V+ L GA V + NG TPL
Sbjct: 83 SAGRDEIVKALLGKGA-------------------------------QVNAVNQNGCTPL 111
Query: 677 HVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILLQMK 727
H A S+ EI L++ G++ D D + T A +G + I ILL K
Sbjct: 112 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 163
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA +G+ ++H LL + N D G T LH+A LL+ GA + I + E
Sbjct: 147 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE 206
Query: 609 SVPLWEAMLG 618
PL A G
Sbjct: 207 KTPLQVAKGG 216
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 75.9 bits (185), Expect = 1e-13, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLE 596
R D +L +A G ++ LL+ G N+ D+ G + LHIAAS G + V LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG 94
Query: 597 YGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE----QND 651
GA +N + G PL + A +HE V +L E GA + D H+ TA+ + +
Sbjct: 95 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKD--HYEATAMHRAAAKGN 151
Query: 652 LLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRAL 711
L ++ +++Y + G TPLH+A E +E K L+ QG+ I + TP +
Sbjct: 152 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 211
Query: 712 A 712
A
Sbjct: 212 A 212
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 50/172 (29%), Positives = 67/172 (38%), Gaps = 32/172 (18%)
Query: 557 LLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616
L +L S D + RTALH A S GH V LL+ G +N +D G PL A
Sbjct: 22 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81
Query: 617 LGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPL 676
+ +V+ L GA V + NG TPL
Sbjct: 82 SAGRDEIVKALLGKGA-------------------------------QVNAVNQNGCTPL 110
Query: 677 HVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILLQMK 727
H A S+ EI L++ G++ D D + T A +G + I ILL K
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 162
Score = 36.2 bits (82), Expect = 0.079, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 32/70 (45%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA +G+ ++H LL + N D G T LH+A LL+ GA + I + E
Sbjct: 146 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE 205
Query: 609 SVPLWEAMLG 618
PL A G
Sbjct: 206 KTPLQVAKGG 215
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLE 596
R D +L +A G ++ LL+ G N+ D+ G + LHIAAS G + V LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLV 94
Query: 597 YGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE----QND 651
GA +N + G PL + A +HE V +L E GA + D H+ TA+ + +
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKD--HYDATAMHRAAAKGN 151
Query: 652 LLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI 698
L ++ ++ Y + G TPLH+A E +E KFL+ QG+ I
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 32/154 (20%)
Query: 572 DNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENG 631
D + RTALH A S GH V LL+ G +N +D G PL A + +V+ L G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 632 ALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
A V + NG TPLH A S+ EI L
Sbjct: 97 A-------------------------------HVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 692 IDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILL 724
++ G++ D D + T A +G + + ILL
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 654 LLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALAD 713
L E+I+ T+ + T LH A S G+ EIV+FL+ G ++ D GW+P +A
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81
Query: 714 HQGQEDIQILLQMK 727
G+++I L +K
Sbjct: 82 SAGRDEIVKALLVK 95
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
++ AA +G+ ++H LL + N D G T LH+A L+ GA + I
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 605 DSEGSVPLWEAMLG 618
+ E PL A G
Sbjct: 202 NKEEKTPLQVAKGG 215
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLE 596
R D +L +A G ++ LL+ G N+ D+ G + LHIAAS G + V LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 597 YGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE----QND 651
GA +N + G PL + A +HE V +L E GA + D H+ TA+ + +
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKD--HYDATAMHRAAAKGN 151
Query: 652 LLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI 698
L ++ ++ Y + G TPLH+A E +E KFL+ QG+ I
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 62/154 (40%), Gaps = 32/154 (20%)
Query: 572 DNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENG 631
D + RTALH A S GH V LL+ G +N +D G PL A + +V+ L G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 632 ALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
A V + NG TPLH A S+ EI L
Sbjct: 97 A-------------------------------HVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 692 IDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILL 724
++ G++ D D + T A +G + + ILL
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 654 LLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALAD 713
L E+I+ T+ + T LH A S G+ EIV+FL+ G ++ D GW+P +A
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81
Query: 714 HQGQEDIQILLQMK 727
G ++I L +K
Sbjct: 82 SAGXDEIVKALLVK 95
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
++ AA +G+ ++H LL + N D G T LH+A L+ GA + I
Sbjct: 142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Query: 605 DSEGSVPLWEAMLG 618
+ E PL A G
Sbjct: 202 NKEEKTPLQVAKGG 215
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRG-SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
LS AA RGD + +LL R P+ L+ G+TAL + G + LL+ GA N++
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQ 70
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGD 664
D+ G+ P+ +A A G L + L+ +V +G D
Sbjct: 71 DASGTSPVHDA------------ARTGFLDT-------------------LKVLVEHGAD 99
Query: 665 VTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
V L S G+ P+H+AI EG+ +V FL + SD+ D G TP LA +G +++ +L
Sbjct: 100 VNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 158
Query: 725 Q 725
Q
Sbjct: 159 Q 159
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 34/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRG-SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
LS AA RGD + +LL R P+ L+ G+TAL + G + LL+ GA N++
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSPAVALELLKQGASPNVQ 72
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGD 664
D+ G+ P+ +A A G L + L+ +V +G D
Sbjct: 73 DASGTSPVHDA------------ARTGFLDT-------------------LKVLVEHGAD 101
Query: 665 VTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
V L S G+ P+H+AI EG+ +V FL + SD+ D G TP LA +G +++ +L
Sbjct: 102 VNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDIL 160
Query: 725 Q 725
Q
Sbjct: 161 Q 161
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N LD +G T LH+AA GH V +LL+YGAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE 648
+N D+ G PL A + H +V +L ++GA +++ D F TA +
Sbjct: 73 VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD--KFGKTAFD 118
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G + V +L+ GAD+N D +G PL A + +GH
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLA---------------------AQLGH 59
Query: 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
L ++E ++ YG DV + G TPLH+A G++EIV+ L+ G+D++
Sbjct: 60 ----------LEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQ 109
Query: 702 DIHGWTPRALADHQGQEDIQILLQ 725
D G T ++ G ED+ +LQ
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEILQ 133
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G ++ LL+ G+D N DN G T LH+AA RGH V +LL++GAD+N +D
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110
Query: 606 SEGSVPLWEAMLGKHEPVVRIL 627
G ++ +E + IL
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
L+ G+D N +D+ G T LH+AA RGH V +LL++GAD+N RD G PL A H
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 621 EPVVRILAENGALISSSDVGHFACTAIE 648
+V +L E GA +++ D F TA +
Sbjct: 93 LEIVEVLLEYGADVNAQD--KFGKTAFD 118
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 612 LWEAMLGKHEPVVRILAENGALISSSDVG-----HFACTAIEQNDLLLLEKIVHYGGDVT 666
L EA + VRIL NGA +++ D H A ++ L ++E ++ +G DV
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA---KRGHLEIVEVLLKHGADVN 74
Query: 667 QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
G TPLH+A + G++EIV+ L++ G+D++ D G T ++ G ED+ +LQ
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA RG ++ LL+ G+D N D GRT LH+AA+ GH V +LLEYGAD+N +D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 606 SEGSVPLWEAMLGKHEPVVRIL 627
G ++ +E + IL
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
L+ G+D N +D+ G T LH+AA RGH V +LL++GAD+N DS G PL A H
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 621 EPVVRILAENGALISSSDVGHFACTAIE 648
+V +L E GA +++ D F TA +
Sbjct: 93 LEIVEVLLEYGADVNAQD--KFGKTAFD 118
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 612 LWEAMLGKHEPVVRILAENGALISSSDVG-----HFACTAIEQNDLLLLEKIVHYGGDVT 666
L EA + VRIL NGA +++ D H A ++ L ++E ++ +G DV
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA---KRGHLEIVEVLLKHGADVN 74
Query: 667 QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
S G TPLH+A + G++EIV+ L++ G+D++ D G T ++ G ED+ +LQ
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 60.1 bits (144), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA RG ++ LL+ G+D N D+ GRT LH+AA+ GH V +LLEYGAD+N +D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 606 SEGSVPLWEAMLGKHEPVVRIL 627
G ++ +E + IL
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 66.2 bits (160), Expect = 7e-11, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 13/225 (5%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA+ G L L L+ +G N + + + LH A GH CV +LL++GA +N ++
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 609 SVPLWEAMLGKHEPVVRILAENGALIS-SSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQ 667
PL+ A + V +L ++GA + SD+ A + + + ++ YGG++
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185
Query: 668 LTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL--- 724
S+ TPL++A VK L++ G+D+++ +P E++ LL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVVRTASEELACLLMDF 244
Query: 725 ----QMKPEPKKAPVLTVPKKQQAPNPRKHLVKYSSEPSIPPYTP 765
Q K K PV VP + +P L S+P P
Sbjct: 245 GADTQAKNAEGKRPVELVPPE----SPLAQLFLEREGASLPKPKP 285
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 577 TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISS 636
+ +H AA GH+ + L+ G +NI ++ PL EA LG H V+IL ++GA ++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 637 SDVGHF-----ACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
AC + + + LL + +G V Q S+ +P+H A G++E V L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLL---LQHGASV-QPESDLASPIHEAARRGHVECVNSL 176
Query: 692 IDQGSDIDKPDIHGWTPRALA-DHQGQEDIQILLQ 725
I G +ID H TP LA ++Q + ++ LL+
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 33/161 (20%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL + AA RG ++ L+ G + + ++ T L++A CV LLE GAD
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVH 660
+N + S PL VVR TA E+ LL++
Sbjct: 216 VNQGKGQDS-PL--------HAVVR-------------------TASEELACLLMD---- 243
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
+G D + G P+ + E + + FL +G+ + KP
Sbjct: 244 FGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLPKP 283
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGA----DLNIRDSEGSVPLWEAM 616
L+ G+ P LD +G+TA H+A C+ LL+ A DL R+ +G L A+
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 617 LGKHEPVVRILAENGALISSSDVGHFACT---AIEQNDLLLLEKIVHYGGDVTQLTSNGT 673
+ + V++L E GA I + D+ A+E N L +++ ++ +G +V +G+
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 674 TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA 712
+ LH A G + +V+ L+ G+D + H TP +A
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 572 DNNGRTALHIAASRGH----EHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRIL 627
D +G T LHIA +G+ V L + G +L+I ++ PL A++ VVR+L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 628 AENGALISSSD-----VGHFACTAIEQNDL-LLLEKIVHYGGDVTQLTSNGTTPLHVAIS 681
GA + D H AC L LL+ D+ +G T LHVA++
Sbjct: 66 VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125
Query: 682 EGNIEIVKFLIDQGSDIDKPDIH-GWTPRALA-DHQGQEDIQILLQ 725
E V+ L+++G+DID DI G +P A ++ +Q+LLQ
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 574 NGRTALHIAASRGHEHCVVLLLEYGADLNIRD-SEGSVPLWEAMLGKHEPVVRILAENGA 632
+G TALH+A + + V LLLE GAD++ D G PL A+ +V++L ++GA
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174
Query: 633 LISSSD-VGHFACTAIEQNDLL-LLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVK 689
+++ G A + LL L+ +V G D + + TPL VA S I+I++
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 550 AVRGDGLLLHQLL-RRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AV + L + QLL + G++ N +G +ALH A+ RG V L+ GAD ++++
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 609 SVPLWEAMLGKHEPVVRIL 627
PL M+ + V+ IL
Sbjct: 217 DTPL---MVARSRRVIDIL 232
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 7/198 (3%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA+ G L L L+ +G N + + + LH A GH CV +LL++GA +N ++
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 609 SVPLWEAMLGKHEPVVRILAENGALIS-SSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQ 667
PL+ A + V +L ++GA + SD+ A + + + ++ YGG++
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 129
Query: 668 LTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL--- 724
S+ TPL++A VK L++ G+D+++ A+A +E +L+
Sbjct: 130 KISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFG 189
Query: 725 ---QMKPEPKKAPVLTVP 739
Q K K PV VP
Sbjct: 190 ADTQAKNAEGKRPVELVP 207
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 577 TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISS 636
+ +H AA GH+ + L+ G +NI ++ PL EA LG H V+IL ++GA ++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 637 SDVGHF-----ACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
AC + + + LL + +G V Q S+ +P+H A G++E V L
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLL---LQHGASV-QPESDLASPIHEAARRGHVECVNSL 120
Query: 692 IDQGSDIDKPDIHGWTPRALA-DHQGQEDIQILLQ 725
I G +ID H TP LA ++Q + ++ LL+
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 34/156 (21%)
Query: 572 DNNGR--TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAE 629
D GR T LH AA V LL++GAD++ +D G VPL A H V +L +
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 630 NGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVK 689
+GA+++ +D+ F TPLH A ++G EI K
Sbjct: 99 HGAVVNVADLWKF-------------------------------TPLHEAAAKGKYEICK 127
Query: 690 FLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
L+ G+D K + G TP L G DIQ LL+
Sbjct: 128 LLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700
HFA N + ++E ++ +G DV G PLH A S G+ E+ + L+ G+ ++
Sbjct: 49 HFAAG---YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 701 PDIHGWTPRALADHQGQEDI-QILLQMKPEPKK 732
D+ +TP A +G+ +I ++LLQ +P K
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 138
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597
GR PL FAA ++ LL+ G+D + D G LH A S GH LL+++
Sbjct: 42 GRQSTPLH--FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 598 GADLNIRDSEGSVPLWEAML-GKHEPVVRILAENGA 632
GA +N+ D PL EA GK+E + ++L ++GA
Sbjct: 100 GAVVNVADLWKFTPLHEAAAKGKYE-ICKLLLQHGA 134
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 34/156 (21%)
Query: 572 DNNGR--TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAE 629
D GR T LH AA V LL++GAD++ +D G VPL A H V +L +
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 630 NGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVK 689
+GA+++ +D+ F TPLH A ++G EI K
Sbjct: 97 HGAVVNVADLWKF-------------------------------TPLHEAAAKGKYEICK 125
Query: 690 FLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
L+ G+D K + G TP L G DIQ LL+
Sbjct: 126 LLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 160
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700
HFA N + ++E ++ +G DV G PLH A S G+ E+ + L+ G+ ++
Sbjct: 47 HFAAG---YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 701 PDIHGWTPRALADHQGQEDI-QILLQMKPEPKK 732
D+ +TP A +G+ +I ++LLQ +P K
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597
GR PL FAA ++ LL+ G+D + D G LH A S GH LL+++
Sbjct: 40 GRQSTPLH--FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 598 GADLNIRDSEGSVPLWEAML-GKHEPVVRILAENGA 632
GA +N+ D PL EA GK+E + ++L ++GA
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYE-ICKLLLQHGA 132
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 34/156 (21%)
Query: 572 DNNGR--TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAE 629
D GR T LH AA V LL++GAD++ +D G VPL A H V +L +
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 630 NGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVK 689
+GA+++ +D+ F TPLH A ++G EI K
Sbjct: 101 HGAVVNVADLWKF-------------------------------TPLHEAAAKGKYEICK 129
Query: 690 FLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
L+ G+D K + G TP L G DIQ LL+
Sbjct: 130 LLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLR 164
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700
HFA N + ++E ++ +G DV G PLH A S G+ E+ + L+ G+ ++
Sbjct: 51 HFAAG---YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 701 PDIHGWTPRALADHQGQEDI-QILLQMKPEPKK 732
D+ +TP A +G+ +I ++LLQ +P K
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 140
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597
GR PL FAA ++ LL+ G+D + D G LH A S GH LL+++
Sbjct: 44 GRQSTPLH--FAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 598 GADLNIRDSEGSVPLWEAML-GKHEPVVRILAENGA 632
GA +N+ D PL EA GK+E + ++L ++GA
Sbjct: 102 GAVVNVADLWKFTPLHEAAAKGKYE-ICKLLLQHGA 136
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+AA H V +LL++GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE 648
+N D++GS PL A L H +V +L ++GA +++ D F TA +
Sbjct: 73 VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD--KFGKTAFD 118
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 612 LWEAMLGKHEPVVRILAENGALISSSDVG-----HFACTAIEQNDLLLLEKIVHYGGDVT 666
L EA + VRIL NGA ++++D H A + + L ++E ++ +G DV
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAA---DYDHLEIVEVLLKHGADVN 74
Query: 667 QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
++G+TPLH+A G++EIV+ L+ G+D++ D G T ++ G ED+ +LQ
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LL+ G+D N DN+G T LH+AA GH V +LL++GAD+N +D G ++ +
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Query: 621 EPVVRIL 627
E + IL
Sbjct: 126 EDLAEIL 132
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLL 594
L AA+ G ++ LL+ G+D N D G+TA I+ G+E +L
Sbjct: 84 LHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 36/88 (40%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
L+ G+D N +D+ G T LH+AA RGH V +LL++GAD+N D G PL A H
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 621 EPVVRILAENGALISSSDVGHFACTAIE 648
+V +L E GA +++ D F TA +
Sbjct: 93 LEIVEVLLEYGADVNAQD--KFGKTAFD 118
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 31/144 (21%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
A G + V +L+ GAD+N D G PL A H +V +L ++GA +++SD+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW- 79
Query: 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
G TPLH+A + G++EIV+ L++ G+D++
Sbjct: 80 ------------------------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQ 109
Query: 702 DIHGWTPRALADHQGQEDIQILLQ 725
D G T ++ G ED+ +LQ
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEILQ 133
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA RG ++ LL+ G+D N D GRT LH+AA+ GH V +LLEYGAD+N +D
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 606 SEGSVPLWEAMLGKHEPVVRIL 627
G ++ +E + IL
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 34/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRG-SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
LS AA RGD + +LL R P+ L+ G+TAL + G + LL+ GA N++
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ 70
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGD 664
D+ G+ P+ +A A G L + L+ +V +G D
Sbjct: 71 DTSGTSPVHDA------------ARTGFLDT-------------------LKVLVEHGAD 99
Query: 665 VTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
V G P+H+A+ EG+ +V FL + SD+ + D G TP LA +G +D+ +L
Sbjct: 100 VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Query: 725 Q 725
Q
Sbjct: 159 Q 159
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 31/144 (21%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G + V +L+ GAD+N D G PL A + H +V +L +NGA
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA--------- 71
Query: 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
DV + + G TPLH+ G++EIV+ L+ G+D++
Sbjct: 72 ----------------------DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQ 109
Query: 702 DIHGWTPRALADHQGQEDIQILLQ 725
D G T ++ G ED+ +LQ
Sbjct: 110 DKFGKTAFDISIDNGNEDLAEILQ 133
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T LH+AA H V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE 648
+N D+ G PL + H +V +L ++GA +++ D F TA +
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD--KFGKTAFD 118
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 523 MMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIA 582
M G + E K+ PL L AA+ ++ LL+ G+D N +D G T LH+
Sbjct: 34 MANGADVNAEDKVGL----TPLHL--AAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV 87
Query: 583 ASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRIL 627
A GH V +LL++GAD+N +D G ++ +E + IL
Sbjct: 88 AMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 52/103 (50%)
Query: 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597
G D L AA G + +LL +G+D N +G T LH+AA GH V LLL
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 598 GADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVG 640
GAD+N R +G+ P A H +V++L GA +++ G
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 31/126 (24%)
Query: 574 NGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL 633
+G T LH AA GH V LL GAD+N R +G+ PL A H +V++L GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA- 66
Query: 634 ISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693
DV + +G TP H+A G+ EIVK L
Sbjct: 67 ------------------------------DVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 694 QGSDID 699
+G+D++
Sbjct: 97 KGADVN 102
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 655 LEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADH 714
++K++ G DV + +G TPLH+A G+ EIVK L+ +G+D++ G TP LA
Sbjct: 25 VKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Query: 715 QGQEDIQILLQMK 727
G +I LL K
Sbjct: 85 NGHHEIVKLLDAK 97
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 669 TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMK 727
+ +G TPLH A G+ E VK L+ +G+D++ G TP LA G +I LL K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 34/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRG-SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
LS AA RGD + +LL R P+ L+ G+TAL + G + LL+ GA N++
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ 64
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGD 664
D+ G+ P+ +A A G L + L+ +V +G D
Sbjct: 65 DTSGTSPVHDA------------ARTGFLDT-------------------LKVLVEHGAD 93
Query: 665 VTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
V G P+H+A+ EG+ +V FL + SD+ + D G TP LA +G +D+ +L
Sbjct: 94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 725 Q 725
Q
Sbjct: 153 Q 153
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 95/207 (45%), Gaps = 30/207 (14%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
A GD + +LL RG+D N + +G TALH A + V L+E GA++N D+EG
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 609 SVPLWEAM----LGKHEPVVRILAENGALISSSDV---------------------GHFA 643
+PL A L E ++ A GA+ S D G
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 644 CTAIEQNDLLLLEKIVHY--GGDVTQL--TSNGTTPLHVAISEGNIEIVKFLIDQGSDID 699
A ++ + ++L + G + + +G T LHVA ++G E++K LI D++
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN 226
Query: 700 KPDIHGWTPRALADHQGQED-IQILLQ 725
D GWTP A H G+E+ +IL++
Sbjct: 227 IKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 575 GRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALI 634
G TALH+AA++G+ + LL++ D+NI+D +G PL A E RIL EN +
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM 258
Query: 635 SS-SDVGHFACTAIEQNDLLLLEKI 658
+ + VG A +++ L LE++
Sbjct: 259 EAVNKVGQTAFDVADEDILGYLEEL 283
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGA-DLNIRDSEGSVPLWEAMLGK 619
L++ G+ + D G T LH+AA +GH V LL G D+N +D G P+ A K
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK 122
Query: 620 HEPVVRILAENGALISSSDVGHFACT-------AIEQNDLLLLEKIVHYGGDVTQLTSNG 672
H +V++L G+ I+ D C ++ ++LL K D+ + +G
Sbjct: 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC-----DLHAVNIHG 177
Query: 673 TTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQ 717
+PLH+A E + V + + SD+ + G TP A Q
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 3/182 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA G + H L++ G++ + + RT L AA H V L++ GA ++ +D
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGAL-ISSSDVGHFACT--AIEQNDLLLLEKIVHYG 662
+EGS L A H VV+ L NG + ++ D G + A E + L++ ++ G
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Query: 663 GDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQI 722
D+ + LH A G ++I + L+ D+ +IHG +P +A + + D +
Sbjct: 135 SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVV 194
Query: 723 LL 724
L
Sbjct: 195 LF 196
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 574 NGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL 633
N R+ LH AA GH +L++ GA+++ + PL EA H V+ L + GAL
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 634 ISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693
+ D + G+T LH+A +G+ E+V++L+
Sbjct: 70 VDPKD-------------------------------AEGSTCLHLAAKKGHYEVVQYLLS 98
Query: 694 QGS-DIDKPDIHGWTPRALADHQGQEDIQILLQMK 727
G D++ D GWTP A D+ LL K
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 544 LSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNI 603
+ L +AA G + LL D + ++ +G + LHIAA CVVL L +D+ +
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL 205
Query: 604 RDSEGSVPLWEAML 617
++ EG PL A L
Sbjct: 206 KNKEGETPLQCASL 219
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 54/106 (50%)
Query: 530 DTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEH 589
+TE L +G L +A G ++ L+ RG+ N ++ T LH+AAS GH
Sbjct: 22 NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD 81
Query: 590 CVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALIS 635
V LL+Y AD+N + G+VPL A + V L NGAL+S
Sbjct: 82 IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 31/143 (21%)
Query: 566 SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVR 625
+D N+ D++G + LH A G V +L+ GA +N+ + PL A H +V
Sbjct: 25 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIV- 83
Query: 626 ILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNI 685
+K++ Y D+ + +G PLH A G
Sbjct: 84 ------------------------------QKLLQYKADINAVNEHGNVPLHYACFWGQD 113
Query: 686 EIVKFLIDQGSDIDKPDIHGWTP 708
++ + L+ G+ + + +G P
Sbjct: 114 QVAEDLVANGALVSICNKYGEMP 136
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700
H+AC + ++E ++ G + + TPLH+A S G+ +IV+ L+ +DI+
Sbjct: 39 HWAC---REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 701 PDIHGWTPRALADHQGQEDI 720
+ HG P A GQ+ +
Sbjct: 96 VNEHGNVPLHYACFWGQDQV 115
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 664 DVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI-QI 722
D+ Q +G +PLH A EG +V+ LI +G+ I+ + TP LA G DI Q
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 723 LLQMKPE 729
LLQ K +
Sbjct: 86 LLQYKAD 92
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 31/144 (21%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G + V +L+ GAD+N +D G PL+ A H +V +L +NGA
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA--------- 71
Query: 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701
DV + + G TPLH+A G++EI + L+ G+D++
Sbjct: 72 ----------------------DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQ 109
Query: 702 DIHGWTPRALADHQGQEDIQILLQ 725
D G T ++ G ED+ +LQ
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D G T L++A + GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE 648
+N D+ G PL A H + +L ++GA +++ D F TA +
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD--KFGKTAFD 118
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 43/82 (52%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L A G ++ LL+ G+D N +D G T LH+AA GH +LL++GAD+N +D
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110
Query: 606 SEGSVPLWEAMLGKHEPVVRIL 627
G ++ +E + IL
Sbjct: 111 KFGKTAFDISIGNGNEDLAEIL 132
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 54/106 (50%)
Query: 530 DTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEH 589
+TE L +G L +A G ++ L+ RG+ N ++ T LH+AAS GH
Sbjct: 27 NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD 86
Query: 590 CVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALIS 635
V LL+Y AD+N + G+VPL A + V L NGAL+S
Sbjct: 87 IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 600 DLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVG-----HFACTAIEQNDLLL 654
DLN D G PL A VV +L GA I+ + G H A + ++ +
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD---I 87
Query: 655 LEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708
++K++ Y D+ + +G PLH A G ++ + L+ G+ + + +G P
Sbjct: 88 VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP 141
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700
H+AC + ++E ++ G + + TPLH+A S G+ +IV+ L+ +DI+
Sbjct: 44 HWAC---REGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 701 PDIHGWTPRALADHQGQEDI 720
+ HG P A GQ+ +
Sbjct: 101 VNEHGNVPLHYACFWGQDQV 120
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 664 DVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI-QI 722
D+ Q +G +PLH A EG +V+ LI +G+ I+ + TP LA G DI Q
Sbjct: 31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 723 LLQMKPE 729
LLQ K +
Sbjct: 91 LLQYKAD 97
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 612 LWEAMLGKHEPVVRILAENGALISSSDV-GHFAC-TAIEQNDLLLLEKIVHYGGDVTQLT 669
L EA + VRIL NGA ++++D GH A L ++E ++ G DV
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 670 SNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
+ G TPLH+A ++EIV+ L+ G+D++ D G T ++ G ED+ +LQ
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L G+D N D G T LH+AA GH V +LL+ GAD
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE 648
+N + G PL A H +V +L ++GA +++ D F TA +
Sbjct: 73 VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD--KFGKTAFD 118
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA+ G ++ LL+ G+D N N GRT LH+AA H V +LL++GAD+N +D
Sbjct: 51 LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110
Query: 606 SEGSVPLWEAMLGKHEPVVRIL 627
G ++ +E + IL
Sbjct: 111 KFGKTAFDISIDNGNEDLAEIL 132
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 19/190 (10%)
Query: 546 LSFAAVRGDGL---------------LLHQLLRRGSDPNE-LDNNGRTALHIAASRGHEH 589
L AAVRG GL ++ LL +G++ N +D G T+LH+AA
Sbjct: 6 LMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARAD 65
Query: 590 CVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQ 649
LL+ GAD N +D+ G PL A+ V +IL N A ++ + I
Sbjct: 66 AAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
Query: 650 NDLL---LLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGW 706
L ++E ++ D+ ++G T LH A + N E V L+ ++ D D
Sbjct: 126 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDE 185
Query: 707 TPRALADHQG 716
TP LA +G
Sbjct: 186 TPLFLAAREG 195
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 561 LLRRGSDPNELDNNGRTALHIA-ASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619
LL G+D N DN GRT LH A A+ +LL +LN R +G+ PL A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 620 HEPVVRILAENGALISSSDVG-----HFACTA--IEQNDLLLLEKIVHYGGDVTQLTSNG 672
E +V L A I+++D H+A E ++LL+ H+ Q
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM----HHANRDAQ-DDKD 184
Query: 673 TTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
TPL +A EG+ E K L+D ++ + D PR +A + DI LL
Sbjct: 185 ETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +AA G ++ LL+ G+DP L +AL +A S+G+ V +LL+ G D+N D
Sbjct: 56 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 115
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGA 632
G PL A+ G H V++L E+GA
Sbjct: 116 WNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
Q L +GR +LS A +G ++ LL G D NE D NG T L A H CV
Sbjct: 79 QLLGKGRES---ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 135
Query: 593 LLLEYGADLNIRDSEG 608
+LLE GAD I G
Sbjct: 136 MLLESGADPTIETDSG 151
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 578 ALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGA---L 633
++H A++G + +E +N D EG PL W A G+ VV L +NGA L
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ-IAVVEFLLQNGADPQL 80
Query: 634 ISSS--DVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
+ AC+ + +++ ++ G DV + NG TPL A+ +++ VK L
Sbjct: 81 LGKGRESALSLACSKGYTD---IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 137
Query: 692 IDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
++ G+D G+ LA G +Q +++
Sbjct: 138 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 171
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A + ++E ++ G D L + L +A S+G +IVK L+D G D+++ D +G
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 706 WTPRALADHQGQ-EDIQILLQMKPEP 730
TP A H + +++LL+ +P
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADP 144
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 548 FAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR--- 604
AA+ G LL L +G+D NE D G TA AA G + L + GA++N+R
Sbjct: 78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137
Query: 605 --DSE-----GSVPLWEAMLGKHEPVVRILA-ENGALISSSD-VGHFACT-AIEQNDLLL 654
D E G+ L +A H V++IL E GA +++ D +G A A+ +D
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197
Query: 655 LEKIVH----YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS-DIDKPDIHGWTPR 709
+E I H +G DV G TPL +A+ + ++ +V+ L++Q +I+ D G T
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Query: 710 ALA 712
LA
Sbjct: 258 LLA 260
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 500 ANVGDGTIIMNNLLQHLKDLGDPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLH 559
A V D +++ + DL ++EG + Q+ G PL + R D ++
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT--PLHNAVQMSRED--IVE 56
Query: 560 QLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619
LLR G+DP NG T +AA G + L L GAD+N D G EA +
Sbjct: 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116
Query: 620 HEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVA 679
++ L + GA ++ L K D +L G T L A
Sbjct: 117 KVKALKFLYKRGANVN------------------LRRKTKE---DQERLRKGGATALMDA 155
Query: 680 ISEGNIEIVKFLIDQ-GSDIDKPDIHG 705
+G++E++K L+D+ G+D++ D G
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMG 182
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 531 TEQKLARGRMDLPLSLSFAAVRGDGLLLHQLL-RRGSDPNELDNNGRTAL-HIAASRGH- 587
T++ R R +L AA +G +L LL G+D N DN GR AL H S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196
Query: 588 --EHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVV-RILAENGALISSSD 638
E LLL++GAD+N+R G PL A+ KH +V R+L + I+ +D
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 32/115 (27%)
Query: 594 LLEYGADLNIRDSEGS-VPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDL 652
LLE GA++N ++ EG PL A+ E +V +L +GA D
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA------------------DP 65
Query: 653 LLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWT 707
+L +K NG TP +A G+++++K + +G+D+++ D +G+T
Sbjct: 66 VLRKK-------------NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +AA G ++ LL+ G+DP L +AL +A S+G+ V +LL+ G D+N D
Sbjct: 38 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 97
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGA 632
G PL A+ G H V++L E+GA
Sbjct: 98 WNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
Q L +GR +LS A +G ++ LL G D NE D NG T L A H CV
Sbjct: 61 QLLGKGRES---ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 117
Query: 593 LLLEYGADLNIRDSEG 608
+LLE GAD I G
Sbjct: 118 MLLESGADPTIETDSG 133
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A + ++E ++ G D L + L +A S+G +IVK L+D G D+++ D +G
Sbjct: 41 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 706 WTPRALADHQGQ-EDIQILLQMKPEP 730
TP A H + +++LL+ +P
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADP 126
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 578 ALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGA---L 633
++H A++G + +E +N D EG PL W A G+ VV L +NGA L
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ-IAVVEFLLQNGADPQL 62
Query: 634 ISSS--DVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
+ AC+ + +++ ++ G DV + NG TPL A+ +++ VK L
Sbjct: 63 LGKGRESALSLACSKGYTD---IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 119
Query: 692 IDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
++ G+D G+ LA G +Q +++
Sbjct: 120 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N +G + LH+AA G + LLL++GA+ R+++ +VPL A H VV+ L
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 629 ENGALISSSDVGH-----FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEG 683
++ A + D+ +AC+ + LL + +G + + G T LH A+ E
Sbjct: 140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALL---LQHGASINASNNKGNTALHEAVIEK 196
Query: 684 NIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKP 728
++ +V+ L+ G+ + + T A+ + I LLQ+ P
Sbjct: 197 HVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELLQVVP 239
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
D + L A +G ++ LL + PN+ D +G T L A S GH V LLL++GA
Sbjct: 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALI 634
+N +++G+ L EA++ KH VV +L +GA +
Sbjct: 178 INASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L AA+ G L+ LL+ G++ + + LH+A +GH V LL+ A N +D
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALI-SSSDVGHFAC-TAIEQNDLLLLEKIVHYGG 663
G+ PL A G H +V +L ++GA I +S++ G+ A A+ + + ++E ++ +G
Sbjct: 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGA 209
Query: 664 DVTQLTSNGTTPLHVAISEGNIEIVKFL 691
V L T + A E N +I++ L
Sbjct: 210 SVQVLNKRQRTAVDCA--EQNSKIMELL 235
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 655 LEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADH 714
L K+ G V + +G++PLHVA G +++ L+ G++ + P LA
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 715 QGQ-EDIQILLQMKPEPKK 732
QG + ++ LL +P K
Sbjct: 129 QGHFQVVKCLLDSNAKPNK 147
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +AA G ++ LL+ G+DP L +AL +A S+G+ V +LL+ G D+N D
Sbjct: 40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGA 632
G PL A+ G H V++L E+GA
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
Q L +GR +LS A +G ++ LL G D NE D NG T L A H CV
Sbjct: 63 QLLGKGRES---ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119
Query: 593 LLLEYGADLNIRDSEG 608
+LLE GAD I G
Sbjct: 120 MLLESGADPTIETDSG 135
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A + ++E ++ G D L + L +A S+G +IVK L+D G D+++ D +G
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 706 WTPRALADHQGQ-EDIQILLQMKPEP 730
TP A H + +++LL+ +P
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADP 128
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 10/154 (6%)
Query: 578 ALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL-WEAMLGKHEPVVRILAENGA---L 633
++H A++G + +E +N D EG PL W A G+ VV L +NGA L
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQ-IAVVEFLLQNGADPQL 64
Query: 634 ISSS--DVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
+ AC+ + +++ ++ G DV + NG TPL A+ +++ VK L
Sbjct: 65 LGKGRESALSLACSKGYTD---IVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 692 IDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725
++ G+D G+ LA G +Q +++
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 31/168 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +A +G ++ QL++ G+DP+ +D G + +H+AA GH V L+ G D+++ D
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 606 SEGSVPL-WEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGD 664
G PL W A + +++ LLL + GD
Sbjct: 140 QNGMTPLMWAA--------------------------YRTHSVDPTRLLLTFNVSVNLGD 173
Query: 665 VTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA 712
+ T LH A+ GN ++ L++ G+++D +I G + LA
Sbjct: 174 ----KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 594 LLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACT----AIEQ 649
L+E G D+ D E L A + +V+ GA++ G T A Q
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG-GDLNSTPLHWATRQ 86
Query: 650 NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708
L ++ +++ YG D + + G + +H+A G+ IV +LI +G D+D D +G TP
Sbjct: 87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 32/159 (20%)
Query: 575 GRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALI 634
G T LHIA+ +G V LL+ G+D N++D G PL EA H VV +L ++ AL+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 635 SSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQ 694
+++ QND +PLH A G+++IVK L+
Sbjct: 70 NTTGY---------QND----------------------SPLHDAAKNGHVDIVKLLLSY 98
Query: 695 GSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKA 733
G+ + +I G P D + + + +LL K E A
Sbjct: 99 GASRNAVNIFGLRPVDYTDDESMKSL-LLLPEKNESSSA 136
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L A+++GD + LL+ GSDPN D+ G T LH A + GH V LLL++ A +N
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQND-------LLLLEK 657
+ PL +A H +V++L GA S + V F ++ D LLL EK
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGA--SRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 56.2 bits (134), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 553 GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
G+ + +LL RG++P+ D G +H AA G + LLE+ AD+NI D+EG++PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 613 WEAMLGKHEPVVRILAENGALISSSDVGH 641
A H VV L ++ ++S+VGH
Sbjct: 108 HLAAKEGHLRVVEFLVKH----TASNVGH 132
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L+ AA RGD L LL+ + N + GRTAL + E LLL GA+ +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
G+ + +A A G L + L+ ++ + DV
Sbjct: 68 RTGNAVIHDA------------ARAGFLDT-------------------LQTLLEFQADV 96
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQ-GSDIDKPDIHGWTPRALADHQGQEDIQILL 724
+ G PLH+A EG++ +V+FL+ S++ + G T LA G+ ++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 725 Q 725
Q
Sbjct: 157 Q 157
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 56.2 bits (134), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 553 GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
G+ + +LL RG++P+ D G +H AA G + LLE+ AD+NI D+EG++PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 613 WEAMLGKHEPVVRILAENGALISSSDVGH 641
A H VV L ++ ++S+VGH
Sbjct: 108 HLAAKEGHLRVVEFLVKH----TASNVGH 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L+ AA RGD L LL+ + N + GRTAL + E LLL GA+ +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
G + +A A G L + L+ ++ + DV
Sbjct: 68 RTGFAVIHDA------------ARAGQLDT-------------------LQTLLEFQADV 96
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQ-GSDIDKPDIHGWTPRALADHQGQEDIQILL 724
+ G PLH+A EG++ +V+FL+ S++ + G T LA G+ ++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 725 Q 725
Q
Sbjct: 157 Q 157
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGA-DLNIRDSE 607
AA G L LL +D N DN G LH+AA GH V L+++ A ++ R+ +
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 608 GSVPLWEAMLGKHEPVVRILAENGA 632
G A L VV ++ NGA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 77/195 (39%), Gaps = 36/195 (18%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N+ D G TALH+AA+ LLE AD NI+D+ G PL A+ + V +IL
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 629 ENGALISSSDVGHFACTAIEQNDLL---LLEKIVHYGGDVT------------------- 666
N A + + I L +LE +++ DV
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170
Query: 667 ----QLTSNGT----------TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA 712
L NG TPL +A EG+ E K L+D ++ D D PR +A
Sbjct: 171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
Query: 713 DHQGQEDIQILLQMK 727
+ DI LL ++
Sbjct: 231 QERMHHDIVRLLDLE 245
Score = 33.5 bits (75), Expect = 0.55, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 528 STDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH 587
+TD + ++ G L L+ A V G +L L+ +D N +D+ G++ALH AA+ +
Sbjct: 114 ATDLDARMHDGTTPLILAARLA-VEG---MLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 588 EHCVVLLLEYGADLNIRDSEGSVPLWEA 615
V+LL+ GA+ +++++ PL+ A
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLA 197
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 31/141 (21%)
Query: 572 DNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENG 631
D T LH+AA V LLL++GAD++ +D G VPL A H V +L ++G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 632 ALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
A +++ D+ F TPLH A S+ +E+ L
Sbjct: 115 ACVNAMDLWQF-------------------------------TPLHEAASKNRVEVCSLL 143
Query: 692 IDQGSDIDKPDIHGWTPRALA 712
+ G+D + HG + +A
Sbjct: 144 LSHGADPTLVNCHGKSAVDMA 164
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LLR+G++ NE + + T LH+AA R H + +L ++GA +N DS G L A L H
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH 292
Query: 621 EPVVRILAENGA 632
R+L G+
Sbjct: 293 LQTCRLLLSYGS 304
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 102/246 (41%), Gaps = 45/246 (18%)
Query: 521 DPMMEGISTDTEQKL-------------ARGRMDLPLSLS--FAAVRGDGLLLHQLLRRG 565
D ++E + E+KL + GR PL L+ + VR ++ LL+ G
Sbjct: 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVR----IVQLLLQHG 81
Query: 566 SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVR 625
+D + D G LH A S GH LLL++GA +N D PL EA V
Sbjct: 82 ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 626 ILAENGA---LI-----SSSDV---------------GHFACTAIEQNDLLLLEKIVHYG 662
+L +GA L+ S+ D+ GH A + DL ++K +
Sbjct: 142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE 201
Query: 663 GDVTQLTSNGTTPLHVAISE---GNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQED 719
+ + T LH A++ ++ + L+ +G+++++ + TP +A + D
Sbjct: 202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261
Query: 720 IQILLQ 725
+ +L
Sbjct: 262 VMEVLH 267
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
D L AA R ++ L + G+ N LD+ G+TALH AA GH LLL YG+D
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDV 639
+I +G A +G E V +IL+E+ + +SDV
Sbjct: 306 PSIISLQG---FTAAQMGN-EAVQQILSESTPM-RTSDV 339
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 38/151 (25%)
Query: 577 TALHIAASRGH---EHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL 633
TALH A + H + LLL GA++N ++ + PL A H V+ +L ++GA
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 634 ISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693
+++ D S G T LH A G+++ + L+
Sbjct: 273 MNALD-------------------------------SLGQTALHRAALAGHLQTCRLLLS 301
Query: 694 QGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
GSD + G+T A G E +Q +L
Sbjct: 302 YGSDPSIISLQGFT----AAQMGNEAVQQIL 328
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL-------- 612
LL+ G+ N +D T LH AAS+ LLL +GAD + + G +
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPEL 169
Query: 613 -----------------WEAMLGKHEPVVRILAENGALISSSDVG-HFACTAIEQNDLLL 654
EA L K + + + N S + H A ++ +
Sbjct: 170 RERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 655 LEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP---RAL 711
E ++ G +V + + TPLHVA + ++++ L G+ ++ D G T AL
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 712 ADH 714
A H
Sbjct: 290 AGH 292
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 36/195 (18%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N+ D G TALH+AA LLE AD NI+D+ G PL A+ + V +IL
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 629 ENGALISSSDVGHFACTAIEQNDLL---LLEKIVHYGGDVT------------------- 666
N A + + I L +LE +++ DV
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170
Query: 667 ----QLTSNGT----------TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA 712
L NG TPL +A EG+ E K L+D ++ D D PR +A
Sbjct: 171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
Query: 713 DHQGQEDIQILLQMK 727
+ DI LL ++
Sbjct: 231 QERMHHDIVRLLDLE 245
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 528 STDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH 587
+TD + ++ G L L+ A V G +L L+ +D N +D+ G++ALH AA+ +
Sbjct: 114 ATDLDARMHDGTTPLILAARLA-VEG---MLEDLINSHADVNAVDDLGKSALHWAAAVNN 169
Query: 588 EHCVVLLLEYGADLNIRDSEGSVPLWEA 615
V+LL+ GA+ +++++ PL+ A
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLA 197
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 553 GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
G+ + +LL RG++P+ D G +H AA G + LLE+ AD+NI D+EG++PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 613 WEAMLGKHEPVVRILAENGALISSSDVGH 641
A H VV L ++ ++S+VGH
Sbjct: 108 HLAAKEGHLRVVEFLVKH----TASNVGH 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L+ AA RGD L LL+ + N + GRTAL + E LLL GA+ +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
G + +A A G L + L+ ++ + DV
Sbjct: 68 RTGFAVIHDA------------ARAGFLDT-------------------LQTLLEFQADV 96
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQ-GSDIDKPDIHGWTPRALADHQGQEDIQILL 724
+ G PLH+A EG++ +V+FL+ S++ + G T LA G+ ++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 725 Q 725
Q
Sbjct: 157 Q 157
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 553 GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
G+ + +LL RG++P+ D G +H AA G + LLE+ AD+NI D+EG++PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 613 WEAMLGKHEPVVRILAENGALISSSDVGH 641
A H VV L ++ ++S+VGH
Sbjct: 108 HLAAKEGHLRVVEFLVKH----TASNVGH 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L+ AA RGD L LL+ + N + GRTAL + E LLL GA+ +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
G + +A A G L + L+ ++ + DV
Sbjct: 68 RTGFAVIHDA------------ARAGFLDT-------------------LQTLLEFQADV 96
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQ-GSDIDKPDIHGWTPRALADHQGQEDIQILL 724
+ G PLH+A EG++ +V+FL+ S++ + G T LA G+ ++ L+
Sbjct: 97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 725 Q 725
Q
Sbjct: 157 Q 157
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 18/183 (9%)
Query: 548 FAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR--- 604
AA+ G LL L +G+D NE D G TA AA G + L + GA++N+R
Sbjct: 98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157
Query: 605 --DSE-----GSVPLWEAMLGKHEPVVRIL-AENGALISSSD-VGHFACT-AIEQNDLLL 654
D E G+ L +A H V++IL E GA +++ D +G A A+ +D
Sbjct: 158 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 217
Query: 655 LEKIVH----YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS-DIDKPDIHGWTPR 709
+E I H +G DV G TPL +A+ + ++ +V+ L++Q +I+ D G T
Sbjct: 218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
Query: 710 ALA 712
LA
Sbjct: 278 LLA 280
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 499 QANVGDGTIIMNNLLQHLKDLGDPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLL 558
+A V D +++ + DL ++EG + Q+ G PL + R D ++
Sbjct: 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT--PLHNAVQMSRED--IV 75
Query: 559 HQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLG 618
LLR G+DP NG T +AA G + L L GAD+N D G EA +
Sbjct: 76 ELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 135
Query: 619 KHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHV 678
++ L + GA ++ L K D +L G T L
Sbjct: 136 GKVKALKFLYKRGANVN------------------LRRKTKE---DQERLRKGGATALMD 174
Query: 679 AISEGNIEIVKFLIDQ-GSDIDKPDIHG 705
A +G++E++K L+D+ G+D++ D G
Sbjct: 175 AAEKGHVEVLKILLDEMGADVNACDNMG 202
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 531 TEQKLARGRMDLPLSLSFAAVRGDGLLLHQLL-RRGSDPNELDNNGRTAL-HIAASRGH- 587
T++ R R +L AA +G +L LL G+D N DN GR AL H S
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 216
Query: 588 --EHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVV-RILAENGALISSSD 638
E LLL++GAD+N+R G PL A+ KH +V R+L + I+ +D
Sbjct: 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 270
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 32/116 (27%)
Query: 594 LLEYGADLNIRDSEGS-VPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDL 652
LLE GA++N ++ EG PL A+ E +V +L
Sbjct: 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL------------------------- 78
Query: 653 LLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708
+ +G D NG TP +A G+++++K + +G+D+++ D +G+T
Sbjct: 79 ------LRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA 128
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA + D L QLL D + +D NGRTAL A G + CV LL E GADL+ RD G
Sbjct: 52 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 609 SVPLWEAMLGKHEP-VVRILAENGALISSSD 638
+ G P VV L E GA I D
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVED 141
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNI 603
+L F A G + L G+D + D G TALH+AA V L+E GAD+ +
Sbjct: 80 ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 139
Query: 604 RDSEGSVPL 612
D G L
Sbjct: 140 EDERGLTAL 148
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 662 GGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQ 721
G DV NG+TPLH+A G++E+VK L++ G+D++ D G T ++ G ED+
Sbjct: 29 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLA 88
Query: 722 ILLQ 725
+LQ
Sbjct: 89 EILQ 92
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 43/87 (49%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D D NG T LH+AA GH V LLLE GAD
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRIL 627
+N +D G ++ +E + IL
Sbjct: 65 VNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G + V +L+ GAD+ +D GS PL A H VV++L E GA +++ D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD--K 70
Query: 642 FACTAIE 648
F TA +
Sbjct: 71 FGKTAFD 77
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 662 GGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQ 721
G DV NG+TPLH+A G++E+VK L++ G+D+ D G T ++ G ED+
Sbjct: 47 GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106
Query: 722 ILLQ 725
+LQ
Sbjct: 107 EILQ 110
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 42/87 (48%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D D NG T LH+AA GH V LLLE GAD
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRIL 627
+ +D G ++ +E + IL
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G + V +L+ GAD+ +D GS PL A H VV++L E GA + + D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD--K 88
Query: 642 FACTAIE 648
F TA +
Sbjct: 89 FGKTAFD 95
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 542 LPLSLSF-AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
LPL+L +++ G+ L+ +++ DP+ ++ G TALH A GH V L+++G +
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALI 634
+N DS+G PL A + V + L E+GA +
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 654 LLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708
L+++I++ D + G T LH A+ G+ EIVKFL+ G +++ D GWTP
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 658 IVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI 698
+V +G +V S+G TPLH A S N+++ KFL++ G+ +
Sbjct: 89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 553 GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
G+ + +LL RG++P+ D G +H AA G + LLE AD+NI D+EG++PL
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 613 WEAMLGKHEPVVRILAENGALISSSDVGH 641
A H VV L ++ ++S+VGH
Sbjct: 108 HLAAKEGHLRVVEFLVKH----TASNVGH 132
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 33/181 (18%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L+ AA RGD L LL+ + N + GRTAL + E LLL GA+ +++D
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR-GANPDLKD 67
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDV 665
G + +A ++ L EN A ++ IE N+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLENQADVN-----------IEDNE-------------- 102
Query: 666 TQLTSNGTTPLHVAISEGNIEIVKFLIDQ-GSDIDKPDIHGWTPRALADHQGQEDIQILL 724
G PLH+A EG++ +V+FL+ S++ + G T LA G+ ++ L+
Sbjct: 103 ------GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Query: 725 Q 725
Q
Sbjct: 157 Q 157
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 651 DLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708
+L ++++ V D +Q G T LH AI N IV FLI G++++ PD HGWTP
Sbjct: 33 ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP 90
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
+K R R++ + L AA+ G+ ++ Q ++ +DP++ + G TALH A + V
Sbjct: 12 RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD 71
Query: 593 LLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQND 651
L+ GA++N DS G PL A + L ++GA I ++ + A TA E+ D
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA-TAFEKCD 129
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Query: 571 LDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAEN 630
+D NG I + + L Y RDS PL A + E + L EN
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLVEN 57
Query: 631 GALISSSDV-GHFACT-AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIV 688
+ D+ G A A++ N L + EK++ G +V +G TPL +I G E+
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117
Query: 689 KFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
FL++ G++++ ++ G TP +A G+ +I
Sbjct: 118 YFLLEHGANVNDRNLEGETPLIVASKYGRSEI 149
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N D+ RT L +A G E+ + L+E L +D EGS L A+ + L
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 629 ENGALISSSDVGHFA------CTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISE 682
G+ +++ D + LLE +G +V G TPL VA
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE----HGANVNDRNLEGETPLIVASKY 144
Query: 683 GNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQG-QEDIQILLQMK 727
G EIVK L++ G+DI D+ G T A A G QE I+I +++
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 550 AVRGDGL-LLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AV+ + L + +LL +GS+ N D +G+T L + G+ LLE+GA++N R+ EG
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 609 SVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTA 646
PL A +V+ L E GA IS+ D+ A
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LL G++ N+ + G T L +A+ G V LLE GAD++ RD G A +
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179
Query: 621 EPVVRILAE 629
+ V++I E
Sbjct: 180 QEVIKIFTE 188
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
AA + D L QLL D + +D NGRTAL A G + CV LL E GADL+ RD G
Sbjct: 51 AARKADEQALSQLLED-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109
Query: 609 SVPLWEAMLGKHEP-VVRILAENGALISSSDVGHFACTAIE 648
+ G P VV L E GA I D TA+E
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVED--ERGLTALE 148
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNI 603
+L F A G + L G+D + D G TALH+AA V L+E GAD+ +
Sbjct: 79 ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138
Query: 604 RDSEGSVPL 612
D G L
Sbjct: 139 EDERGLTAL 147
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A++ DL ++ V G DV + G PLH A G +EI++FL+ +G+DI+ PD H
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 706 WTPRALADHQGQ 717
TP A ++G
Sbjct: 74 ITPLLSAVYEGH 85
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 548 FAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSE 607
+A GD + + +G D N GR LH AA G + LL GAD+N D
Sbjct: 13 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 72
Query: 608 GSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQND 651
PL A+ H V++L GA + G TA E D
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPDGLTAFEATD 114
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 516 LKDLGDPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNG 575
L ++ D + +G D + L GR L +AA G +L LL +G+D N D +
Sbjct: 20 LDEVKDYVAKG--EDVNRTLEGGRK----PLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 576 RTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608
T L A GH CV LLL GAD ++ +G
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Score = 38.1 bits (87), Expect = 0.025, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 641 HFA--CTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSD- 697
H+A C +E + LLL+ G D+ + TPL A+ EG++ VK L+ +G+D
Sbjct: 45 HYAADCGQLEILEFLLLK-----GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 698 -IDKPDIHGWTPRALADHQGQEDIQILLQ 725
+ PD G T D+Q I+ LLQ
Sbjct: 100 TVKGPD--GLTAFEATDNQA---IKALLQ 123
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A++ DL ++ V G DV + G PLH A G +EI++FL+ +G+DI+ PD H
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 706 WTPRALADHQGQ 717
TP A ++G
Sbjct: 69 ITPLLSAVYEGH 80
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 548 FAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSE 607
+A GD + + +G D N GR LH AA G + LL GAD+N D
Sbjct: 8 WALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH 67
Query: 608 GSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQND 651
PL A+ H V++L GA + G TA+E D
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGA--DKTVKGPDGLTALEATD 109
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 516 LKDLGDPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNG 575
L ++ D + +G D + L GR L +AA G +L LL +G+D N D +
Sbjct: 15 LDEVKDYVAKG--EDVNRTLEGGRK----PLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 576 RTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
T L A GH CV LLL GAD ++ +G L
Sbjct: 69 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 641 HFA--CTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSD- 697
H+A C +E + LLL+ G D+ + TPL A+ EG++ VK L+ +G+D
Sbjct: 40 HYAADCGQLEILEFLLLK-----GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 698 -IDKPDIHGWTPRALADHQGQEDIQILLQ 725
+ PD G T D+Q I+ LLQ
Sbjct: 95 TVKGPD--GLTALEATDNQA---IKALLQ 118
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 543 PLSLSF-AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADL 601
PL+L +++ G+ L+ +++ DP+ ++ G TALH A GH V L+++G ++
Sbjct: 37 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 602 NIRDSEGSVPLWEAMLGKHEPVVRILAENGALI 634
N DS+G PL A + V + L E+GA +
Sbjct: 97 NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 654 LLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708
L+++I++ D + G T LH A+ G+ EIVKFL+ G +++ D GWTP
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP 106
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 658 IVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI 698
+V +G +V S+G TPLH A S N+++ KFL++ G+ +
Sbjct: 89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query: 323 TRKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSI 382
+R++R+ ++ + + +LP L++++L + R+R + ++ I + ++I+ +
Sbjct: 7 SRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR--GKMFDERHIFREVSESIRQDV 64
Query: 383 SHFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAME 442
+++ LV V F G ++ + ++VT ++ E F P + VI + ++ + G ++
Sbjct: 65 ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124
Query: 443 LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAF 494
+I G I + + G GE+ LL + ++ +V+ + L L+ F
Sbjct: 125 IIMSDGVIATSLSD---GSYFGEICLLTRERRVASVKCETYCTLFSLSVQHF 173
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 77/197 (39%), Gaps = 46/197 (23%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N+ D G TALH+AA LLE AD NI+D+ G PL A+ + V +IL
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 78
Query: 629 ENGALISSSDVGHFACT--------AIEQNDLLLLEKIVHYGGDVT-------------- 666
N A + + H T A+E +LE +++ DV
Sbjct: 79 RNRATDLDARM-HDGTTPLILAARLAVEG----MLEDLINSHADVNAVDDLGKSALHWAA 133
Query: 667 ---------QLTSNGT----------TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWT 707
L NG TPL +A EG+ E K L+D ++ D D
Sbjct: 134 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 193
Query: 708 PRALADHQGQEDIQILL 724
PR +A + DI LL
Sbjct: 194 PRDIAQERMHHDIVRLL 210
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 528 STDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH 587
+TD + ++ G L L+ A V G +L L+ +D N +D+ G++ALH AA+ +
Sbjct: 82 ATDLDARMHDGTTPLILAARLA-VEG---MLEDLINSHADVNAVDDLGKSALHWAAAVNN 137
Query: 588 EHCVVLLLEYGADLNIRDSEGSVPLWEA 615
V+LL+ GA+ +++++ PL+ A
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLA 165
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 662 GGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQ 721
G DV +G TPLH+A EG++EIV+ L+ G+D++ D G T ++ G ED+
Sbjct: 25 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLA 84
Query: 722 ILLQ 725
+LQ
Sbjct: 85 EILQ 88
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+D N D +G T LH+AA GH V +LL+ GAD
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRIL 627
+N +D G ++ +E + IL
Sbjct: 61 VNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641
AA G + V +L+ GAD+N +D +G PL A H +V +L + GA +++ D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD--K 66
Query: 642 FACTAIE 648
F TA +
Sbjct: 67 FGKTAFD 73
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 612 LWEAMLGKHEPVVRILAENGALISSSDVGHFACT--AIEQNDLLLLEKIVHYGGDVTQLT 669
L EA + VRIL NGA +++ D + A + L ++E ++ G DV
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 670 SNGTTPLHVAISEGNIEIVKFL 691
G T ++I GN ++ + L
Sbjct: 66 KFGKTAFDISIDNGNEDLAEIL 87
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 679 AISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILLQ 725
A G + V+ L+ G+D++ D G+TP LA +G E +++LL+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 77/197 (39%), Gaps = 46/197 (23%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N+ D G TALH+AA LLE AD NI+D+ G PL A+ + V +IL
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 629 ENGALISSSDVGHFACT--------AIEQNDLLLLEKIVHYGGDVT-------------- 666
N A + + H T A+E +LE +++ DV
Sbjct: 112 RNRATDLDARM-HDGTTPLILAARLAVEG----MLEDLINSHADVNAVDDLGKSALHWAA 166
Query: 667 ---------QLTSNGT----------TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWT 707
L NG TPL +A EG+ E K L+D ++ D D
Sbjct: 167 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 226
Query: 708 PRALADHQGQEDIQILL 724
PR +A + DI LL
Sbjct: 227 PRDIAQERMHHDIVRLL 243
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 528 STDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH 587
+TD + ++ G L L+ A V G +L L+ +D N +D+ G++ALH AA+ +
Sbjct: 115 ATDLDARMHDGTTPLILAARLA-VEG---MLEDLINSHADVNAVDDLGKSALHWAAAVNN 170
Query: 588 EHCVVLLLEYGADLNIRDSEGSVPLWEA 615
V+LL+ GA+ +++++ PL+ A
Sbjct: 171 VDAAVVLLKNGANKDMQNNREETPLFLA 198
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 42/175 (24%)
Query: 567 DPNELDNNGRTALHIAA---SRGHEHCVVLLLEYGADLNI-----RDSE---GSVPLWEA 615
D ELD NG TAL I A R LL+E GA ++ +DSE G L A
Sbjct: 227 DIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286
Query: 616 MLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTP 675
+ P+V+ L VG +Q++ +G TP
Sbjct: 287 AQVSNXPIVKYL-----------VGEKGSNKDKQDE-------------------DGKTP 316
Query: 676 LHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI-QILLQMKPE 729
+ +A EG IE+V +LI QG+ ++ D T R LA +I I + +PE
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 544 LSLSFAAVRGDGLLLHQ---LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
++ + +A + + L++H+ + G+D N D + T L +A V L + GAD
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGAD 191
Query: 601 LNIRDSEGSVPLWEAM----LGKHEPVVRILAENGALISSSDVGHFACTAIEQND----- 651
I + L +A G + G + G A + N+
Sbjct: 192 PTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQV 251
Query: 652 ---LLLLEK--IVHYGGDVTQLTS--NGTTPLHVAISEGNIEIVKFLI-DQGSDIDKPDI 703
LL+EK V Y G + + G T LH A N IVK+L+ ++GS+ DK D
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDE 311
Query: 704 HGWTPRALADHQGQ-EDIQILLQM 726
G TP LA +G+ E + L+Q
Sbjct: 312 DGKTPIXLAAQEGRIEVVXYLIQQ 335
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +A+ G+ + LL G+DP+ L +AL +A++ G+ V LLLE D+NI D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGA-LISSSDVGH 641
G PL A+ G H V L GA L + +D G+
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY 136
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 544 LSLSFAAVRGDGLLLHQLLRRGSD-PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLN 602
LS+ A +G+ L + LR+G + N+ D G T L A++ G V LLE+GAD +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 603 IRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYG 662
I E L A G + +V LLLE+ V
Sbjct: 64 ILAKERESALSLASTGGYTDIVG---------------------------LLLERDV--- 93
Query: 663 GDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQI 722
D+ NG TPL A+ +++ V+ L+ +G+D+ G+TP LA G +Q
Sbjct: 94 -DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Query: 723 LLQ 725
+++
Sbjct: 153 VIE 155
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L +A+ G+ + LL G+DP+ L +AL +A++ G+ V LLLE D+NI D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 606 SEGSVPLWEAMLGKHEPVVRILAENGA-LISSSDVGH 641
G PL A+ G H V L GA L + +D G+
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGY 136
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 544 LSLSFAAVRGDGLLLHQLLRRGSD-PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLN 602
LS+ A +G+ L + LR+G + N+ D G T L A++ G V LLE+GAD +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 603 IRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYG 662
I E L A G + +V LLLE+ V
Sbjct: 64 ILAKERESALSLASTGGYTDIVG---------------------------LLLERDV--- 93
Query: 663 GDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQI 722
D+ NG TPL A+ +++ V+ L+ +G+D+ G+TP LA G +Q
Sbjct: 94 -DINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Query: 723 LLQ 725
+++
Sbjct: 153 VIE 155
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LL+ G++ N+ D+ GR LH A GH L L+ GADL RDSEG PL AM +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 621 EPVVRIL 627
+V +L
Sbjct: 314 ADIVTLL 320
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A N LL E ++ G +V Q S G PLH A G+ + + +G+D+ D G
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 706 WTPRALADHQGQEDIQILLQM 726
P +A DI LL++
Sbjct: 302 RDPLTIAMETANADIVTLLRL 322
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LL+ G++ N+ D+ GR LH A GH L L+ GADL RDSEG PL AM +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 621 EPVVRIL 627
+V +L
Sbjct: 314 ADIVTLL 320
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A N LL E ++ G +V Q S G PLH A G+ + + +G+D+ D G
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 706 WTPRALADHQGQEDIQILLQM 726
P +A DI LL++
Sbjct: 302 RDPLTIAMETANADIVTLLRL 322
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620
LL+ G++ N+ D+ GR LH A GH L L+ GADL RDSEG PL AM +
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 621 EPVVRIL 627
+V +L
Sbjct: 314 ADIVTLL 320
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%)
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
A N LL E ++ G +V Q S G PLH A G+ + + +G+D+ D G
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 706 WTPRALADHQGQEDIQILLQM 726
P +A DI LL++
Sbjct: 302 RDPLTIAMETANADIVTLLRL 322
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 3/153 (1%)
Query: 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD 600
DL L AA G + L+ G+ P D G + LH+AA GH +LL G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACT--AIEQNDLLLLEKI 658
+ R PL A H +V +L ++GA +++ D+ A E N ++E +
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
Query: 659 VHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691
+ YG DV + T ++I GN ++ + L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 612 LWEAMLGKHEPVVRILAENGA-----------LISSSDVGHFACTAIEQNDLLLLEKIVH 660
L EA + VRIL NGA L ++ GHF+ T E ++
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTT----------EVLLR 55
Query: 661 YGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA-DHQGQED 719
G T TPLH+A SEG+ IV+ L+ G+D++ D+ T A +H QE
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
Query: 720 IQILLQ 725
+++L++
Sbjct: 116 VELLIK 121
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 526 GISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASR 585
G+S D K+ R PL + AA G ++ LL+ G+D N D TALH A
Sbjct: 57 GVSRDARTKVDR----TPLHM--AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110
Query: 586 GHEHCVVLLLEYGADLNIR 604
H+ V LL++YGAD++ +
Sbjct: 111 NHQEVVELLIKYGADVHTQ 129
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 73/192 (38%), Gaps = 36/192 (18%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628
N+ D G TALH+AA LLE AD I+D+ G PL A+ + V +IL
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILL 75
Query: 629 ENGALISSSDVGHFACTAIEQNDLLL---LEKIVHYGGDVT------------------- 666
N A + + I L L LE +++ DV
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 135
Query: 667 ----QLTSNGT----------TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA 712
L NG TPL +A EG+ E K L+D ++ D D PR +A
Sbjct: 136 DAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 195
Query: 713 DHQGQEDIQILL 724
+ DI LL
Sbjct: 196 QERMHHDIVRLL 207
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 523 MMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIA 582
++ +TD + ++ G L L+ A + G +L L+ +D N +D+ G++ALH A
Sbjct: 74 LLRNRATDLDARMHDGTTPLILAARLA-LEG---MLEDLINSHADVNAVDDLGKSALHWA 129
Query: 583 ASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEA 615
A+ + V+LL+ GA+ ++++++ PL+ A
Sbjct: 130 AAVNNVDAAVVLLKNGANKDMQNNKEETPLFLA 162
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 572 DNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENG 631
+N +T LH+A LL G D +RD G+ PL A V +L ++
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 632 ------ALISSSDVGHFACTAIE--QNDLLLLEKIVHYGGDVT-QLTSNGTTPLHVAISE 682
+++ +++ C + L ++E +V G DV Q NG T LH+A+
Sbjct: 99 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 683 GNIEIVKFLIDQGSDIDKPDIHGWTPRAL 711
N ++V L+ G+D+++ G++P L
Sbjct: 159 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNI 603
L A++ G ++ L+ G+D N + NGRTALH+A + V LLL+ GAD+N
Sbjct: 117 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 176
Query: 604 RDSEGSVPLWEAMLGKHEPVVRILAENGAL 633
+G P ++ G+ P RI + G L
Sbjct: 177 VTYQGYSP-YQLTWGR--PSTRIQQQLGQL 203
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 647 IEQNDLLLLEKIVHYGGDVTQLTSNGT---TPLHVAISEGNIEIVKFLIDQGSDIDKPDI 703
I + L +E I GD+ L TPLH+A+ EI + L+ G D + D
Sbjct: 14 IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF 73
Query: 704 HGWTPRALADHQG 716
G TP LA QG
Sbjct: 74 RGNTPLHLACEQG 86
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 9/149 (6%)
Query: 572 DNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENG 631
+N +T LH+A LL G D +RD G+ PL A V +L ++
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 632 ------ALISSSDVGHFACTAIE--QNDLLLLEKIVHYGGDVT-QLTSNGTTPLHVAISE 682
+++ +++ C + L ++E +V G DV Q NG T LH+A+
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 683 GNIEIVKFLIDQGSDIDKPDIHGWTPRAL 711
N ++V L+ G+D+++ G++P L
Sbjct: 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
L A++ G ++ L+ G+D N + NGRTALH+A + V LLL+ GAD+N
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGAL 633
+G P ++ G+ P RI + G L
Sbjct: 181 TYQGYSP-YQLTWGR--PSTRIQQQLGQL 206
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 647 IEQNDLLLLEKIVHYGGDVTQLTSNGT---TPLHVAISEGNIEIVKFLIDQGSDIDKPDI 703
I + L +E I GD+ L TPLH+A+ EI + L+ G D + D
Sbjct: 17 IHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF 76
Query: 704 HGWTPRALADHQG 716
G TP LA QG
Sbjct: 77 RGNTPLHLACEQG 89
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 35/198 (17%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
QK GR+ L S+SF A LL ++ D + D++G T HIA S G+ V
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVK 89
Query: 593 LLLE--YGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQN 650
L + DLN ++G L A+ K V + L ENGA + D
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD------------ 137
Query: 651 DLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG-SDIDKPDIHGWTPR 709
PLH A S G++++++ L G S ++ D GWTP
Sbjct: 138 -------------------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 710 ALADHQGQEDIQILLQMK 727
A +G D +LL K
Sbjct: 179 FHALAEGHGDAAVLLVEK 196
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVT-QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI- 698
H AC +N+ +++++H + Q +G PLH ++S EI FL+ + ++
Sbjct: 7 HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 699 --DKPDIHGWTPRALADHQGQEDIQILLQMKP 728
D PD GWTP +A G ++ L +P
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 567 DPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRI 626
D N++ N G T LH+A + L+E GA + I+D +PL A ++ +
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 627 LAENG-ALISSSD------VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVA 679
L G + ++ D + H +LL+EK YG + + + G VA
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVA 215
Query: 680 ISEGNIEIVKFLID 693
++E ++ KF ++
Sbjct: 216 LNE---QVKKFFLN 226
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 35/198 (17%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
QK GR+ L S+SF A LL ++ D + D++G T HIA S G+ V
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVK 89
Query: 593 LLLE--YGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQN 650
L + DLN ++G L A+ K V + L ENGA + D
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD------------ 137
Query: 651 DLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG-SDIDKPDIHGWTPR 709
PLH A S G++++++ L G S ++ D GWTP
Sbjct: 138 -------------------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 710 ALADHQGQEDIQILLQMK 727
A +G D +LL K
Sbjct: 179 FHALAEGHGDAAVLLVEK 196
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVT-QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI- 698
H AC +N+ +++++H + Q +G PLH ++S EI FL+ + ++
Sbjct: 7 HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 699 --DKPDIHGWTPRALADHQGQEDIQILLQMKP 728
D PD GWTP +A G ++ L +P
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 567 DPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRI 626
D N++ N G T LH+A + L+E GA + I+D +PL A ++ +
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 627 LAENG-ALISSSD------VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVA 679
L G + ++ D + H +LL+EK YG + + + G VA
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVA 215
Query: 680 ISEGNIEIVKFLIDQGSD 697
++E ++ KF ++ D
Sbjct: 216 LNE---QVKKFFLNNVVD 230
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 35/198 (17%)
Query: 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVV 592
QK GR+ L S+SF A LL ++ D + D++G T HIA S G+ V
Sbjct: 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD-DYPDDSGWTPFHIACSVGNLEVVK 89
Query: 593 LLLE--YGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQN 650
L + DLN ++G L A+ K V + L ENGA + D
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD------------ 137
Query: 651 DLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG-SDIDKPDIHGWTPR 709
PLH A S G++++++ L G S ++ D GWTP
Sbjct: 138 -------------------KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 710 ALADHQGQEDIQILLQMK 727
A +G D +LL K
Sbjct: 179 FHALAEGHGDAAVLLVEK 196
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVT-QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI- 698
H AC +N+ +++++H + Q +G PLH ++S EI FL+ + ++
Sbjct: 7 HQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 699 --DKPDIHGWTPRALADHQGQEDIQILLQMKP 728
D PD GWTP +A G ++ L +P
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 567 DPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRI 626
D N++ N G T LH+A + L+E GA + I+D +PL A ++ +
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 627 LAENG-ALISSSD------VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVA 679
L G + ++ D + H +LL+EK YG + + + G VA
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK---YGAEYDLVDNKGAKAEDVA 215
Query: 680 ISEGNIEIVKFLIDQGSD 697
++E ++ KF ++ D
Sbjct: 216 LNE---QVKKFFLNNVVD 230
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 24/168 (14%)
Query: 546 LSFAAVRGDGLLLHQLLR-RGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR 604
L AA D L +LL+ G + ++ G TALHIAA + ++L+E +L
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66
Query: 605 DS-----EGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIV 659
EG L A++ ++ +VR L GA +S+ G +
Sbjct: 67 PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG----------------SVF 110
Query: 660 HYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWT 707
HY L G PL A G+ EIV+ LI+ G+DI D G T
Sbjct: 111 HY--RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSD-------------PNELDNNGRTALHIAASRGHEHCV 591
+L A + + L+ LL RG+ P+ L G L AA G E V
Sbjct: 78 ALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV 137
Query: 592 VLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQND 651
LL+E+GAD+ +DS G+ L + IL N FAC + +
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLH----------ILILQPNKT---------FAC---QMYN 175
Query: 652 LLLLEKIVHYGGD---VTQLTSN--GTTPLHVAISEGNIEIVKFLIDQ 694
LLL + GGD +L N G TP +A EGNI + + L+ +
Sbjct: 176 LLL----SYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVP-LWEAMLGKHEPVVRIL 627
+E+D G T L+IA L++ GAD+N+++S P L+ G+ E + +L
Sbjct: 33 DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 628 AE------------NGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTP 675
ALI +++ GH N LLLE D+ G T
Sbjct: 93 KHATPDLNKHNRYGGNALIPAAEKGHI------DNVKLLLEDGRE---DIDFQNDFGYTA 143
Query: 676 L--HVAISEGN---IEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILL 724
L V + EGN +IVK L++ G+D D G T A+ +G +I +L
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 665 VTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
V ++ + G TPL++A+ +IEI K LID+G+DI+ + +P A QG+ +I
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 548 FAAVRGDGLLLHQLLRRGS-DPNELDNNGRTALHIAASRGHEHCVVLLLEYG-ADLNIRD 605
+A +G +L +L+ + D N+ + G AL AA +GH V LLLE G D++ ++
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 606 SEGSVPLWEAMLGK-----HEPVVRILAENGALISSSD 638
G L EA+ + ++ +V++L ENGA S D
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD 175
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 561 LLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597
L+ G+D + DN+GRTA+ A +G+ +L +Y
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVV--GEAKPGDVVGELGLLCYKPQ 474
F E +++Q E D YI+ G ++ R+ E+ V G P D GE+ LL +P+
Sbjct: 276 FEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPR 335
Query: 475 LFTVRTKRLSQLLRLNRTAF 494
TV + + ++L+R F
Sbjct: 336 AATVVARGPLKCVKLDRPRF 355
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
Query: 594 LLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL-ISSSDVGHFA-------CT 645
LL+Y +NI DS G+ L ++ + PVV+ L ++G + + ++ T
Sbjct: 99 LLDYV--VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALAT 156
Query: 646 AIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHG 705
Q+D+ + ++ G + + G T L +A+S G +++VK L+ +D++ D G
Sbjct: 157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDG 216
Query: 706 WTPRALADHQGQEDIQILLQMKP 728
T A G ++I LL P
Sbjct: 217 STALMCACEHGHKEIAGLLLAVP 239
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 30/132 (22%)
Query: 560 QLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619
QL R G+ + G+TAL +A S G V LL AD+N++D +GS L A
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG 227
Query: 620 HEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVA 679
H+ + +L A+ D+ L ++ +G+T L VA
Sbjct: 228 HKEIAGLL-----------------LAVPSCDISLTDR-------------DGSTALMVA 257
Query: 680 ISEGNIEIVKFL 691
+ G EI L
Sbjct: 258 LDAGQSEIASML 269
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY-GADLNI 603
+L A G ++ LL +D N D++G TAL A GH+ LLL D+++
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Query: 604 RDSEGSVPLWEAMLGKHEPVVRIL 627
D +GS L A+ + +L
Sbjct: 246 TDRDGSTALMVALDAGQSEIASML 269
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 34/154 (22%)
Query: 575 GRTALHIAASRGHEHCVVLLLEYGADLNIRDSE-------------GSVPLWEAMLGKHE 621
G +ALHIA + CV LL+E GAD+++R G +PL A K
Sbjct: 103 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 162
Query: 622 PVVRILAEN----GALISSSDVGH---FACTAIEQNDLLLLEKIVHYGGDVTQLTS---- 670
VV L EN +L ++ +G+ A I N ++H + Q+ +
Sbjct: 163 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 222
Query: 671 ----------NGTTPLHVAISEGNIEIVKFLIDQ 694
G TPL +A EG IEI + ++ +
Sbjct: 223 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 671 NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPD-IHGWTPRALA-DHQGQEDIQILLQMKP 728
+G TPLHVA+ + E+V+ L D G+D++KP+ G TP LA + Q +++LL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 729 EP 730
+P
Sbjct: 217 DP 218
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNN-GRTALHIAASRGHEHCVVLLLEYGADLNIR 604
L A + D ++ L G+D N+ + GRT LH+A + LLL+ GAD R
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGA 632
G PL A+L + + R+L +GA
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACT------AIEQNDLLL 654
L + +G PL A++ K +VR+L + GA ++ + C A+E +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP---TCGRTPLHLAVEAQAASV 207
Query: 655 LEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
LE ++ G D T G TPL A+ N + + L G+
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 671 NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPD-IHGWTPRALA-DHQGQEDIQILLQMKP 728
+G TPLHVA+ + E+V+ L D G+D++KP+ G TP LA + Q +++LL+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 729 EP 730
+P
Sbjct: 217 DP 218
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNN-GRTALHIAASRGHEHCVVLLLEYGADLNIR 604
L A + D ++ L G+D N+ + GRT LH+A + LLL+ GAD R
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGA 632
G PL A+L + + R+L +GA
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 601 LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACT------AIEQNDLLL 654
L + +G PL A++ K +VR+L + GA ++ + C A+E +
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP---TCGRTPLHLAVEAQAASV 207
Query: 655 LEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGS 696
LE ++ G D T G TPL A+ N + + L G+
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT GYGD P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 58/150 (38%), Gaps = 31/150 (20%)
Query: 571 LDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAEN 630
L + L AA+RG V LLE GAD N + G P+ M+G + V +L +
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQ-VAELLLLH 66
Query: 631 GALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKF 690
GA + +D T P+H A EG ++ +
Sbjct: 67 GAEPNCADPATL------------------------------TRPVHDAAREGFLDTLVV 96
Query: 691 LIDQGSDIDKPDIHGWTPRALADHQGQEDI 720
L G+ +D D G P LA+ QG DI
Sbjct: 97 LHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605
L+ AA RG + QLL G+DPN L+ GR + + G LLL +GA+ N D
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 37/163 (22%)
Query: 575 GRTALHIAASRGHEHCVVLLLEYGADLNIRDSE--------------GSVPLWEAMLGKH 620
G+TALHIA R + V LL+E GAD+ + G +PL A
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 621 EPVVRILAENG---ALISSSD-VGHFACTAIEQ----------------NDLLLLEKIVH 660
+V+ L +N A IS+ D VG+ A+ + N++L+L +H
Sbjct: 161 LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLH 220
Query: 661 YGGDVTQLTS-NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPD 702
+ ++T+ G TPL +A S G I ++ +++ + +I +P+
Sbjct: 221 PTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR--EIHEPE 261
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+AT TT GYGD++PV R+ + M G+TS+ L
Sbjct: 67 ITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMV--AGITSFGL 112
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 88/230 (38%), Gaps = 63/230 (27%)
Query: 489 LNRTAFLSLVQANVGDG-TIIMNNLLQHLKDLGDPMMEGISTDTEQKLARGRMDLPLSL- 546
NR +V DG +++ LL H K L D ST G+ LP +L
Sbjct: 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPST--------GKTCLPKALL 55
Query: 547 SFAAVRGDGL-LLHQLLRRGSDPNELDNN--------GRTALHIAASRGHEHCVVLLLEY 597
+ +A R D + +L + + + E N+ G+TALHIA R +H V LL+E
Sbjct: 56 NLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK 115
Query: 598 GADLNIRDSE--------------GSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFA 643
GAD++ + G +PL A +V L ENG
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG------------ 163
Query: 644 CTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLH--VAISEGNIEIVKFL 691
H D+ + S G T LH VAI++ E KF+
Sbjct: 164 ----------------HKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 34/154 (22%)
Query: 575 GRTALHIAASRGHEHCVVLLLEYGADLNIRDSE-------------GSVPLWEAMLGKHE 621
G +ALHIA + CV LL+E GAD+++R G +PL A K
Sbjct: 90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149
Query: 622 PVVRILAEN----GALISSSDVGH---FACTAIEQNDLLLLEKIVHYGGDVTQLTS---- 670
VV L EN +L ++ +G+ A I N ++H + Q+ +
Sbjct: 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209
Query: 671 ----------NGTTPLHVAISEGNIEIVKFLIDQ 694
G TPL +A EG IEI + ++ +
Sbjct: 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 264 YVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNL 315
Y +++W+I T TT GYGDI PV RI M F + + + N
Sbjct: 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNF 95
>pdb|1I6X|A Chain A, Structure Of A Star Mutant Crp-Camp At 2.2 A
pdb|1I6X|B Chain B, Structure Of A Star Mutant Crp-Camp At 2.2 A
Length = 209
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKHEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+AT TT GYGD++PV R + M G+TS+ L
Sbjct: 60 ITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 105
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+AT TT GYGD++PV R + M G+TS+ L
Sbjct: 39 ITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 84
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G+GD P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++++S+ TLTT GYGD P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|1O3S|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 75
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|1O3Q|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3R|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|A Chain A, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
pdb|1O3T|B Chain B, Protein-Dna Recognition And Dna Deformation Revealed In
Crystal Structures Of Cap-Dna Complexes
Length = 200
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 16 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 75
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 76 SAWVRAKTACEVAEISYKKFRQLIQVN 102
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 74 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 133
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 134 SAWVRAKTACEVAEISYKKFRQLIQVN 160
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT GYG+ P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TSY L
Sbjct: 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSYGL 128
>pdb|1RUO|A Chain A, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUO|B Chain B, Catabolite Gene Activator Protein (Cap) MutantDNA COMPLEX
+ Adenosine-3',5'-Cyclic-Monophosphate
Length = 209
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/176 (18%), Positives = 77/176 (43%), Gaps = 6/176 (3%)
Query: 324 RKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSIS 383
R++++ + + ++LP ++ ++ H HR + ++ I+ L ++ I
Sbjct: 12 RQYQEKYKQVEQYMSFHKLPADMRQKI--HDYYEHRYQGKIFDEENILSELNDPLREEIV 69
Query: 384 HFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMEL 443
+F LV + LF + + ++++++ E F P + +I + +Y + G +
Sbjct: 70 NFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGV 129
Query: 444 ITRKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQ 499
IT+ ++ G GE+ LL + +VR +L L+ F +++
Sbjct: 130 ITKSSKEMKLTD----GSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLE 181
>pdb|1RUN|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1RUN|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1J59|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1LB2|A Chain A, Structure Of The E. Coli Alpha C-Terminal Domain Of Rna
Polymerase In Complex With Cap And Dna
pdb|1I5Z|A Chain A, Structure Of Crp-Camp At 1.9 A
pdb|1I5Z|B Chain B, Structure Of Crp-Camp At 1.9 A
pdb|1ZRC|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRC|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-Icap38 Dna
pdb|1ZRD|A Chain A, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRD|B Chain B, 4 Crystal Structures Of Cap-dna With All Base-pair
Substitutions At Position 6, Cap-[6a;17t]icap38 Dna
pdb|1ZRE|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRE|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6g;17c]icap38 Dna
pdb|1ZRF|A Chain A, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|1ZRF|B Chain B, 4 Crystal Structures Of Cap-Dna With All Base-Pair
Substitutions At Position 6, Cap-[6c;17g]icap38 Dna
pdb|2GZW|A Chain A, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|B Chain B, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|C Chain C, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2GZW|D Chain D, Crystal Structure Of The E.coli Crp-camp Complex
pdb|2WC2|A Chain A, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|2WC2|B Chain B, Nmr Structure Of Catabolite Activator Protein In The
Unliganded State
pdb|3IYD|G Chain G, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3IYD|H Chain H, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
pdb|3N4M|A Chain A, E. Coli Rna Polymerase Alpha Subunit C-Terminal Domain In
Complex With Cap And Dna
Length = 209
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|2CGP|A Chain A, Catabolite Gene Activator ProteinDNA COMPLEX,
ADENOSINE-3', 5'-Cyclic-Monophosphate
pdb|1G6N|A Chain A, 2.1 Angstrom Structure Of Cap-Camp
pdb|1G6N|B Chain B, 2.1 Angstrom Structure Of Cap-Camp
pdb|3HIF|A Chain A, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|B Chain B, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|C Chain C, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|D Chain D, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|E Chain E, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3HIF|F Chain F, The Crystal Structure Of Apo Wild Type Cap At 3.6 A
Resolution.
pdb|3RYP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RYR|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1CGP|A Chain A, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
pdb|1CGP|B Chain B, Catabolite Gene Activator Protein (Cap)DNA COMPLEX +
Adenosine-3',5'-Cyclic-Monophosphate
Length = 205
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 23 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 82
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 83 SAWVRAKTACEVAEISYKKFRQLIQVN 109
>pdb|1HW5|A Chain A, The CapCRP VARIANT T127LS128A
pdb|1HW5|B Chain B, The CapCRP VARIANT T127LS128A
Length = 210
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
pdb|3TNP|E Chain E, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 394 VYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQV 453
+ LF+ + + + Q++ M + E VI Q + + Y++ G ++ + G+ +
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 209
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLL 513
VG GEL L+ P+ T+ L L+R F ++ N + + +
Sbjct: 210 VGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269
Query: 514 QHLKDLG-----------DPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLL 562
+ L L D + + D EQ +A+G L+ SF V G + +
Sbjct: 270 ESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQG----DLADSFFIVES-GEVKITMK 324
Query: 563 RRGSDPNELDNNGRTALHIA 582
R+G +E++ NG A+ IA
Sbjct: 325 RKGK--SEVEENG--AVEIA 340
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++++S+ TLTT GYGD P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT GYG+ P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|3FWE|A Chain A, Crystal Structure Of The Apo D138l Cap Mutant
pdb|3FWE|B Chain B, Crystal Structure Of The Apo D138l Cap Mutant
Length = 210
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER 83
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric
Holoenzyme
Length = 416
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 20/200 (10%)
Query: 394 VYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQV 453
+ LF+ + + + Q++ M + E VI Q + + Y++ G ++ + G+ +
Sbjct: 150 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 209
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLL 513
VG GEL L+ P+ T+ L L+R F ++ N + + +
Sbjct: 210 VGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFI 269
Query: 514 QHLKDLG-----------DPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLL 562
+ L L D + + D EQ +A+G L+ SF V G + +
Sbjct: 270 ESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQG----DLADSFFIVES-GEVKITMK 324
Query: 563 RRGSDPNELDNNGRTALHIA 582
R+G +E++ NG A+ IA
Sbjct: 325 RKGK--SEVEENG--AVEIA 340
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 206 RNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYV 265
R+ S ++ R + A V L V A +LAE R G + + Y
Sbjct: 25 RHGSALQWRAAGAATVLLVIVLLAGSYLAVLAE--RGAPGAQL-------------ITYP 69
Query: 266 TSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+++WS+ T TT GYGD++PV R+ + M G+TS+ L
Sbjct: 70 RALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSFGL 111
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R+ + M G+TS+ L
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSFGL 105
>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 164
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 394 VYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQV 453
+ LF+ + + + Q++ M + E VI Q + + Y++ G ++ + G+ +
Sbjct: 49 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 108
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
VG GEL L+ P+ T+ L L+R F ++ N
Sbjct: 109 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 156
>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp-
Dependent Protein Kinase
Length = 161
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 394 VYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQV 453
+ LF+ + + + Q++ M + E VI Q + + Y++ G ++ + G+ +
Sbjct: 43 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 102
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
VG GEL L+ P+ T+ L L+R F ++ N
Sbjct: 103 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 150
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R+ + M G+TS+ L
Sbjct: 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMV--AGITSFGL 84
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS++T TT GYGD++PV R + M G+TS+ L
Sbjct: 39 ITYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 84
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVV--GEAKPGDVVGELGLLCYKPQ 474
F + +++Q E + +I++ G+ ++ R+ E+ V G P D GE+ LL +P+
Sbjct: 185 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPK 244
Query: 475 LFTVRTKRLSQLLRLNRTAF 494
TV + + ++L+R F
Sbjct: 245 AATVVARGPLKCVKLDRPRF 264
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVV--GEAKPGDVVGELGLLCYKPQ 474
F + +++Q E + +I++ G+ ++ R+ E+ V G P D GE+ LL +P+
Sbjct: 181 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 240
Query: 475 LFTVRTKRLSQLLRLNRTAF 494
TV + + ++L+R F
Sbjct: 241 AATVVARGPLKCVKLDRPRF 260
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVV--GEAKPGDVVGELGLLCYKPQ 474
F + +++Q E + +I++ G+ ++ R+ E+ V G P D GE+ LL +P+
Sbjct: 183 FEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPR 242
Query: 475 LFTVRTKRLSQLLRLNRTAF 494
TV + + ++L+R F
Sbjct: 243 AATVVARGPLKCVKLDRPRF 262
>pdb|3QOP|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3QOP|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RDI|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3ROU|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|A Chain A, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
pdb|3RPQ|B Chain B, Domain-Domain Flexibility Leads To Allostery Within The
Camp Receptor Protein (Crp)
Length = 210
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVVGELGLLCYKPQL 475
+P K +I Q E LY +V G++ LI + G E ++ GD +GELGL +
Sbjct: 24 YPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILFYLNQGDFIGELGLFEEGQER 83
Query: 476 FT-VRTKRLSQLLRLNRTAFLSLVQAN 501
VR K ++ ++ F L+Q N
Sbjct: 84 SAWVRAKTACEVAEISYKKFRQLIQVN 110
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 60 ITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 105
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 39 ITYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 84
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 105
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 40 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 85
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 105
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 84
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 105
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 105
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 38 ITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 83
>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 384 HFLFYSLVDQVY----LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTG 439
+ F S +D++ +F+GV + L +++ FP V + E LYI+++G
Sbjct: 19 NLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISG 78
Query: 440 AMELITRK-GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLV 498
+++ R G E ++ P D+ GEL + P+ + T + + ++R A S +
Sbjct: 79 KVKIGRRAPDGRENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138
>pdb|3E97|A Chain A, Crystal Structure Of Transcriptional Regulator Of CrpFNR
Family (Yp_604437.1) From Deinococcus Geothermalis Dsm
11300 At 1.86 A Resolution
Length = 231
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK--GGIEQV 453
LF+ V D + + + F P E V+ Q+ L+++ TG + ++R GG E+V
Sbjct: 13 LFQNVPEDAXREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVR-VSRVSLGGRERV 71
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAF 494
+G+ VVGE +L ++ + +VR + L L+R F
Sbjct: 72 LGDIYAPGVVGETAVLAHQERSASVRALTPVRTLXLHREHF 112
>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent
Protein Kinase
Length = 310
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%)
Query: 394 VYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQV 453
+ LF+ + + L Q++ M + E VI Q + + Y++ G +++ K +
Sbjct: 43 ILLFKNLDQEQLSQVLDAMFEKIVKTDEHVIDQGDDGDNFYVIERGTYDILVTKDNQTRS 102
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
VG+ GEL L+ P+ T+ L L+R F ++ N
Sbjct: 103 VGQYDNRGSFGELALMYNTPRAATIIATSEGSLWGLDRVTFRRIIVKN 150
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 386 LFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT 445
+F S ++ V LF+ + ++V + + + E +I Q E YI+ +G + ++
Sbjct: 157 MFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILI 216
Query: 446 R-------KGGIEQV-VGEAKPGDVVGELGLLCYKPQ 474
R GG ++V + G GEL L+ KP+
Sbjct: 217 RSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPR 253
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD++PV R + M G+TS+ L
Sbjct: 39 ITYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMV--AGITSFGL 84
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700
H A ++++ L +++ +V G++ + T G+T LH N E +K L+ + I+
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI 233
Query: 701 PDIHGWTPRALADHQGQEDIQILL 724
+ G TP +A E + LL
Sbjct: 234 ANESGETPLDIAKRLKHEHCEELL 257
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 525 EGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQ---LLRRGSDPNELDNNGRTALHI 581
+G+ + LA G +L A D LH L++ + ++ G TALH
Sbjct: 152 DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211
Query: 582 AASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAE 629
+ C+ LLL A + I + G PL A KHE +L +
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|B Chain B, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|C Chain C, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I54|D Chain D, Crystal Structure Of Mtbcrp In Complex With Camp
pdb|3I59|B Chain B, Crystal Structure Of Mtbcrp In Complex With N6-Camp
Length = 249
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 384 HFLFYSLVDQVY----LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTG 439
+ F S +D++ +F+GV + L +++ FP V + E LYI+++G
Sbjct: 19 NLYFQSHMDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISG 78
Query: 440 AMELITRK-GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLV 498
+++ R G E ++ P D+ GEL + P+ + T + + ++R A S +
Sbjct: 79 KVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 267 SIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNL 315
+++W++ T TT GYGD+ P ++ I M + + L+G ++N+
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 267 SIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNL 315
+++W++ T TT GYGD+ P ++ I M + + L+G ++N+
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta
Regulatory Subunit Of Camp-Dependent Protein Kinase
Length = 305
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 394 VYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQV 453
+ LF+ + + + Q++ M + E VI Q + + Y++ G ++ + G+ +
Sbjct: 39 ILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRC 98
Query: 454 VGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
VG GEL L+ P+ T+ L L+R F ++ N
Sbjct: 99 VGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKN 146
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G GD P +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 84
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD+ PV R+ + M G+TS+ L
Sbjct: 38 ITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSFGL 83
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T TT GYGD+ PV R+ + M G+TS+ L
Sbjct: 39 ITYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMV--AGITSFGL 84
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 37.7 bits (86), Expect = 0.027, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++WS+ T T GYGD++PV R+ + M G+TS+ L
Sbjct: 60 ITYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMV--AGITSFGL 105
>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|3D0S|B Chain B, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form
pdb|4A2U|A Chain A, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|B Chain B, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|C Chain C, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|D Chain D, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|E Chain E, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|F Chain F, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|G Chain G, Crp(Cap) From Myco. Tuberculosis, With Camp
pdb|4A2U|H Chain H, Crp(Cap) From Myco. Tuberculosis, With Camp
Length = 227
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK-GGIEQVV 454
+F+GV + L +++ FP V + E LYI+++G +++ R G E ++
Sbjct: 13 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 72
Query: 455 GEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLV 498
P D+ GEL + P+ + T + + ++R A S +
Sbjct: 73 TIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 116
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTS 306
+ Y +++WS+ T TT GYGD++PV R + M G+TS
Sbjct: 60 ITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMV--AGITS 102
>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
pdb|3MZH|B Chain B, Crystal Structure Of Camp Receptor Protein From
Mycobacterium Tuberculosis In Complex With Camp And Its
Dna Binding Element
Length = 225
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK-GGIEQVV 454
+F+GV + L +++ FP V + E LYI+++G +++ R G E ++
Sbjct: 11 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 70
Query: 455 GEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLV 498
P D+ GEL + P+ + T + + ++R A S +
Sbjct: 71 TIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 114
>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
pdb|3H3U|B Chain B, Crystal Structure Of Crp (Camp Receptor Protein) From
Mycoba Tuberculosis
Length = 224
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK-GGIEQVV 454
+F+GV + L +++ FP V + E LYI+++G +++ R G E ++
Sbjct: 10 IFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLL 69
Query: 455 GEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLV 498
P D+ GEL + P+ + T + + ++R A S +
Sbjct: 70 TIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 113
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 407 QLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGEL 466
+L + + + P E +I + + + Y++ GA++ +++KG + V+ + K D GE+
Sbjct: 143 KLADALDTKIYQPGETIIREGDQGENFYLIEYGAVD-VSKKG--QGVINKLKDHDYFGEV 199
Query: 467 GLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLV 498
LL P+ TV + +++ L ++ F L+
Sbjct: 200 ALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 395 YLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVV 454
+LF + +D ++ ++ + P +I Q + Y++ G ++ + V
Sbjct: 13 FLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVN----DNKV 68
Query: 455 GEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQ 514
+ PG GEL L+ P+ TV L L+R F ++ + ++ ++LL+
Sbjct: 69 NSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK 128
Query: 515 HLKDLGDPMMEGISTDTEQKLA 536
+ P+++ ++T KLA
Sbjct: 129 SM-----PVLKSLTTYDRAKLA 145
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G G+ P +IF I ++F +GL + G ++ L V+
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 101
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G G+ P +IF I ++F +GL + G ++ L V+
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 101
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 36.6 bits (83), Expect = 0.069, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRER 291
+ Y +I+WS+ T TT GYGD +PV R
Sbjct: 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGR 68
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G G+ P +IF I ++F +GL + G ++ L V+
Sbjct: 48 LRPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 101
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 36.2 bits (82), Expect = 0.076, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPV 286
+ Y +++WS+ T TT GYGD++PV
Sbjct: 60 ITYPRALWWSVETATTVGYGDLYPV 84
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G G+ P ++F I ++F +GL + G ++ L V+
Sbjct: 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL---VFGFIHKLAVN 104
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLT 305
+R + ++Y+S+ TLTT G G+ P +IF I ++F +GL
Sbjct: 48 LRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLV 91
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G G+ P +IF I ++F +GL + G ++ L V+
Sbjct: 30 LRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 83
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT G G+ P +IF I ++F +GL + G ++ L V+
Sbjct: 48 LRPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 101
>pdb|4EV0|A Chain A, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
pdb|4EV0|D Chain D, Crystal Structure Of Thermus Thermophilus Catabolite
Activator Protein
Length = 216
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELI-TRKGGIEQVV 454
LF G++ + + ++ + +P + + Q + LY++ +G + L T GG E+ +
Sbjct: 6 LFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65
Query: 455 GEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQ 499
PG++ GE+ LL + + ++LL L R +L+L++
Sbjct: 66 ALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIR 110
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLL 309
+ Y +++W+ T TT YGD++PV R+ + M G+TS+ L
Sbjct: 60 ITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMV--AGITSFGL 105
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 267 SIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGL 304
+++W++ TL+TTGYGD P + R+ M +G+
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGI 202
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 286
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P+ TV LL L+ F L ++
Sbjct: 287 PV------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 334
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 70/183 (38%), Gaps = 46/183 (25%)
Query: 556 LLLHQLLRRGSDPNELDN--------NGRTALHIAASRGHEHCVVLLLEYGADLNIRDSE 607
L L Q+ R +P L N G +ALHIA + CV LL+E GA+++ R
Sbjct: 68 LPLLQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARACG 127
Query: 608 -------------GSVPLWEAMLGKHEPVVRILAEN----GALISSSDVGH---FACTAI 647
G +PL A K VV L EN +L ++ G+ A I
Sbjct: 128 RFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXI 187
Query: 648 EQNDLLLLEKIVH-YGG---------------DVTQLTSNGTTPLHVAISEGNIEIVKFL 691
N + + Y G D+ L TPL +A EG IEI + +
Sbjct: 188 SDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQD--LTPLKLAAKEGKIEIFRHI 245
Query: 692 IDQ 694
+ +
Sbjct: 246 LQR 248
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 56/251 (22%)
Query: 489 LNRTAFLSLV-QANVGDGTIIMNNLLQHLKDLGDPMMEGISTDTEQKLARGRMDLPLSL- 546
NR +V + + D ++ LL H K L D ST G+ LP +L
Sbjct: 2 FNRPILFDIVSRGSTADLDGLLPFLLTHKKRLTDEEFREPST--------GKTCLPKALL 53
Query: 547 SFAAVRGDGL-LLHQLLRRGSDPNELDNN--------GRTALHIAASRGHEHCVVLLLEY 597
+ + R D + +L + R + E N+ G+TALHIA R +H V LL+
Sbjct: 54 NLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQ 113
Query: 598 GADLNIRDSE--------------GSVPLWEAMLGKHEPVVRILAEN---GALISSSD-- 638
GAD++ + G +PL A +V L EN A + D
Sbjct: 114 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSR 173
Query: 639 ---VGHFACTAIEQN------------DLLLLE--KIVHYGGDVTQLTSNGTTPLHVAIS 681
V H A AI N DLLLL+ ++ L ++G +PL +A
Sbjct: 174 GNTVLH-ALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAK 232
Query: 682 EGNIEIVKFLI 692
G I I + +I
Sbjct: 233 TGKIGIFQHII 243
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612
N D+NG T L+IAA G+ V LL+YGAD I + G P+
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 670 SNGTTPLHVAISEGNIEIVKFLIDQGSD 697
SNG T L++A GNI IV L+D G+D
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGAD 308
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 672 GTTPLHVAISEGNIEIVKFLIDQGSD 697
G TPLH S N+E+VK L+ GS+
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSN 156
>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|B Chain B, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|C Chain C, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|D Chain D, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|E Chain E, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
pdb|3R6S|F Chain F, Crystal Structure Of Glxr Transcription Factor From
Corynebacterium Glutamicum With Camp
Length = 247
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 390 LVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK-G 448
++ + +F+GV + L+ +M+ FP + + E LYI+ +G ++L
Sbjct: 27 ILSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPD 86
Query: 449 GIEQVVGEAKPGDVVGELGLLCYKPQ 474
G E ++ P D+ GEL + P+
Sbjct: 87 GRENLLTIMGPSDMFGELSIFDPGPR 112
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCV-VLLLEYGADLNIR 604
L AA RG+ L + L N LD G TAL+ A GH+ V L + +LN +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 605 DSEGSVPLWEAMLGKHEPVVRILAENGA 632
+ G L A + +V++L GA
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 569 NELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSE 607
N+ + G TALH AA +G+ V LLL GA ++R+ E
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 71
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P+ TV LL L+ F L ++
Sbjct: 72 PV------ELGPGAFFGEMALISGEPESATVSAATTVSLLSLHSADFQMLCSSS 119
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 69
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P+ TV LL L+ F L ++
Sbjct: 70 PV------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 117
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 69
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P+ TV LL L+ F L ++
Sbjct: 70 PV------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 117
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 14 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 73
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P+ TV LL L+ F L ++
Sbjct: 74 PV------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 121
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 33.5 bits (75), Expect = 0.60, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 71
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P+ TV LL L+ F L ++
Sbjct: 72 PV------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSS 119
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 264 YVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLG 303
+ S+YW+ T+ T GYGD P F + + +G
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIG 85
>pdb|4H2I|A Chain A, Human Ecto-5'-Nucleotidase (Cd73): Crystal Form Iii
(Closed) In Complex With Ampcp
Length = 532
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 448 GGIEQVVG-EAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDG- 505
GGI V KPGD V +L +LC K ++ + ++ ++ ++ FL AN GDG
Sbjct: 428 GGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFL----ANGGDGF 483
Query: 506 TIIMNNLLQHLKDLGDPMMEGIST 529
+I + LL+H D GD + +ST
Sbjct: 484 QMIKDELLRH--DSGDQDINVVST 505
>pdb|4H1S|A Chain A, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
pdb|4H1S|B Chain B, Crystal Structure Of A Truncated Soluble Form Of Human
Cd73 With Ecto- 5'-Nucleotidase Activity
Length = 530
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 448 GGIEQVVG-EAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDG- 505
GGI V KPGD V +L +LC K ++ + ++ ++ ++ FL AN GDG
Sbjct: 428 GGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFL----ANGGDGF 483
Query: 506 TIIMNNLLQHLKDLGDPMMEGIST 529
+I + LL+H D GD + +ST
Sbjct: 484 QMIKDELLRH--DSGDQDINVVST 505
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 598 GADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISS-SDVGHFACT-AIEQNDLLLL 655
DL+ R +G+ PL A E ++ L + A +++ D+G A A N++
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 656 EKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQ 715
++ G + + TPL +A EG+ E K L+D ++ D D PR +A +
Sbjct: 65 VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 124
Query: 716 GQEDIQILL 724
DI LL
Sbjct: 125 MHHDIVRLL 133
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 528 STDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH 587
+TD + ++ G L L+ A + G +L L+ +D N +D+ G++ALH AA+ +
Sbjct: 5 ATDLDARMHDGTTPLILAARLA-LEG---MLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 588 EHCVVLLLEYGADLNIRDSEGSVPLWEA 615
V+LL+ GA+ ++++++ PL+ A
Sbjct: 61 VDAAVVLLKNGANKDMQNNKEETPLFLA 88
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+V + ++S+ TL T GYGD+HP
Sbjct: 97 FVGAFFFSVETLATVGYGDMHP 118
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK 447
+ LV V LF+ + +L ++V ++A P + E ++ +V G++ + T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN 71
Query: 448 GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501
E PG GE+ L+ +P TV LL L+ F L ++
Sbjct: 72 PV------ELGPGAFFGEMALISGEPWSATVSAATTVSLLSLHSADFQMLCSSS 119
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+V + ++S+ TL T GYGD+HP
Sbjct: 97 FVGAFFFSVETLATVGYGDMHP 118
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+ S+YW+ T+ T GYGD P
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSP 50
>pdb|4AVA|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 From Mycobacterium Tuberculosis
pdb|4AVB|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVB|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 24/138 (17%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVG 455
+F+G + L L ++ + ++ Q E ++ +G+ E+ ++
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIA 79
Query: 456 EAKPGDVVGELGLLCYKPQLFTVRT------------------------KRLSQLLRLNR 491
A PG +VGE+ LL P+ TV T +RL + R
Sbjct: 80 RALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVGERLLRTARQRL 139
Query: 492 TAFLSLVQANVGDGTIIM 509
AF+S + + DGT +M
Sbjct: 140 AAFVSPIPVRLADGTQLM 157
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+ S+YW+ T+ T GYGD P
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSP 50
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+ S+YW+ T+ T GYGD P
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSP 50
>pdb|4AVC|A Chain A, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
pdb|4AVC|B Chain B, Crystal Structure Of Protein Lysine Acetyltransferase
Rv0998 In Complex With Acetyl Coa And Camp
Length = 333
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 1/128 (0%)
Query: 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVG 455
+F+G + L L ++ + ++ Q E ++ +G+ E+ ++
Sbjct: 20 VFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIA 79
Query: 456 EAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQH 515
A PG +VGE+ LL P+ TV T R AF + V G G ++ Q
Sbjct: 80 RALPGXIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATXVHIP-GVGERLLRTARQR 138
Query: 516 LKDLGDPM 523
L P+
Sbjct: 139 LAAFVSPI 146
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+ S+YW+ T+ T GYGD P
Sbjct: 36 WTVSLYWTFVTIATVGYGDYSP 57
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 264 YVTSIYWSIATLTTTGYGDIHP 285
+ S+YW+ T+ T GYGD P
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSP 67
>pdb|3MDP|A Chain A, Crystal Structure Of A Putative Cyclic Nucleotide-Binding
Protein (Gmet_1532) From Geobacter Metallireducens Gs-15
At 1.90 A Resolution
Length = 142
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 408 LVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGG----IEQVVGEAKPGDVV 463
L++E K+ FP + +N +L +L+ G +EL GG V PG +
Sbjct: 27 LISEEKS--FPTGSVIFKENSKADNLXLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF 84
Query: 464 GELGLLCYKPQLFT--VRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNL 512
G L+ KP +T R + +++ +N + N G ++ NN+
Sbjct: 85 GVSSLI--KPYHYTSSARATKPVRVVDINGARLREXSENNQALGQVLXNNV 133
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 264 YVTSIYWSIATLTTTGYGDI 283
++ IYW+I +TT G+GDI
Sbjct: 52 FMAGIYWTITVMTTLGFGDI 71
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 264 YVTSIYWSIATLTTTGYGDI 283
++ IYW+I +TT G+GDI
Sbjct: 52 FMAGIYWTITVMTTLGFGDI 71
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 267 SIYWSIATLTTTGYGDIHP 285
+ ++S+ TL T GYGD+HP
Sbjct: 82 AFFFSVETLATVGYGDMHP 100
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 33/115 (28%)
Query: 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTAL-------------------------- 579
L+ AA RG + LL G++PN ++ GR +
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 75
Query: 580 -------HIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRIL 627
H AA G +V+L GA L++RD+ G +P+ A H V R L
Sbjct: 76 ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 405 LFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAME-LITRKGGIEQVVGEAKPGDVV 463
L +L+ + K +I + L+ ++ G++ LI G E ++G GD
Sbjct: 6 LDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF 65
Query: 464 GELGLL 469
GELGL
Sbjct: 66 GELGLF 71
>pdb|3IWZ|A Chain A, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|B Chain B, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|C Chain C, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
pdb|3IWZ|D Chain D, The C-Di-Gmp Responsive Global Regulator Clp Links
Cell-Cell Signaling To Virulence Gene Expression In
Xanthomonas Campestris
Length = 230
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 417 FPPKEDVILQNEAPTDLYILVTGAMELITRKGG-IEQVVGEAKPGDVVGELGLL 469
+P + DV + LY +++G++ +I + E V+G G+ VGE+GL
Sbjct: 39 YPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLF 92
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 262 VRYVTSIYWSIATLTTTGYGDIHPVNTR-ERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318
+R + ++Y+S+ TLTT GD P T +IF I ++F +GL + G ++ L V+
Sbjct: 31 LRPIDALYFSVVTLTTV--GDTPPPQTDFGKIFTILYIFIGIGL---VFGFIHKLAVN 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,532,657
Number of Sequences: 62578
Number of extensions: 1113769
Number of successful extensions: 3299
Number of sequences better than 100.0: 219
Number of HSP's better than 100.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2342
Number of HSP's gapped (non-prelim): 578
length of query: 887
length of database: 14,973,337
effective HSP length: 107
effective length of query: 780
effective length of database: 8,277,491
effective search space: 6456442980
effective search space used: 6456442980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)