Query 002728
Match_columns 887
No_of_seqs 772 out of 5018
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:54:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03192 Voltage-dependent pot 100.0 3E-130 6E-135 1191.9 85.4 781 42-884 25-820 (823)
2 KOG0498 K+-channel ERG and rel 100.0 4.3E-98 9E-103 847.1 49.2 565 41-608 39-642 (727)
3 KOG0500 Cyclic nucleotide-gate 100.0 4.1E-66 8.8E-71 540.6 36.1 416 85-511 3-433 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.4E-65 3.1E-70 539.5 27.5 457 45-514 189-671 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 5.7E-61 1.2E-65 507.1 37.1 434 69-520 218-660 (815)
6 KOG4412 26S proteasome regulat 100.0 1.2E-33 2.6E-38 258.6 13.1 181 534-715 30-214 (226)
7 KOG4412 26S proteasome regulat 100.0 2.2E-32 4.7E-37 250.3 14.4 191 542-732 3-199 (226)
8 PHA02791 ankyrin-like protein; 100.0 8.7E-31 1.9E-35 276.1 24.2 193 538-734 26-223 (284)
9 PHA02791 ankyrin-like protein; 100.0 4.3E-29 9.3E-34 263.3 21.7 186 541-733 60-248 (284)
10 PHA02875 ankyrin repeat protei 100.0 2.3E-28 5.1E-33 277.9 24.5 189 543-731 3-194 (413)
11 PHA03100 ankyrin repeat protei 100.0 1.7E-28 3.6E-33 285.2 21.6 196 537-732 101-310 (480)
12 PHA02878 ankyrin repeat protei 100.0 8.6E-28 1.9E-32 277.8 23.7 192 540-733 35-295 (477)
13 KOG0509 Ankyrin repeat and DHH 100.0 1.5E-28 3.2E-33 268.0 16.1 182 546-727 48-234 (600)
14 PHA02946 ankyin-like protein; 100.0 8.7E-28 1.9E-32 272.2 22.4 193 536-730 66-268 (446)
15 PHA02875 ankyrin repeat protei 100.0 2.3E-27 5E-32 269.8 24.1 195 539-733 32-230 (413)
16 PHA02798 ankyrin-like protein; 100.0 1.3E-27 2.7E-32 276.9 20.9 197 536-732 65-318 (489)
17 KOG0509 Ankyrin repeat and DHH 100.0 4.9E-28 1.1E-32 264.0 15.5 180 536-715 72-255 (600)
18 PHA02946 ankyin-like protein; 99.9 9.9E-27 2.1E-31 263.6 23.7 186 543-730 38-234 (446)
19 PHA02795 ankyrin-like protein; 99.9 7.3E-27 1.6E-31 254.7 20.7 183 548-732 83-289 (437)
20 PHA02874 ankyrin repeat protei 99.9 1.6E-26 3.5E-31 264.0 23.4 186 539-725 32-242 (434)
21 PHA03100 ankyrin repeat protei 99.9 1.7E-26 3.6E-31 268.4 22.7 195 538-732 64-277 (480)
22 PHA02874 ankyrin repeat protei 99.9 2.3E-26 5E-31 262.8 23.4 190 538-729 120-313 (434)
23 PHA02716 CPXV016; CPX019; EVM0 99.9 2.2E-26 4.8E-31 267.7 23.2 190 539-728 174-426 (764)
24 PHA02859 ankyrin repeat protei 99.9 2.4E-26 5.3E-31 234.0 20.8 173 541-716 20-203 (209)
25 PHA02716 CPXV016; CPX019; EVM0 99.9 1.6E-26 3.5E-31 268.8 20.4 184 550-733 292-568 (764)
26 PHA02989 ankyrin repeat protei 99.9 3.4E-26 7.3E-31 265.3 21.7 193 537-730 103-314 (494)
27 PHA03095 ankyrin-like protein; 99.9 4.4E-26 9.6E-31 264.3 22.5 195 538-732 79-284 (471)
28 PHA02878 ankyrin repeat protei 99.9 4.9E-26 1.1E-30 263.2 22.0 169 557-727 149-323 (477)
29 KOG0508 Ankyrin repeat protein 99.9 1.1E-26 2.5E-31 241.8 14.3 190 538-728 38-238 (615)
30 PHA03095 ankyrin-like protein; 99.9 7.1E-26 1.5E-30 262.6 21.7 195 537-731 112-316 (471)
31 PHA02876 ankyrin repeat protei 99.9 7.3E-25 1.6E-29 264.6 24.0 196 538-733 269-471 (682)
32 PF11834 DUF3354: Domain of un 99.9 9.5E-26 2.1E-30 178.2 7.9 66 815-880 1-69 (69)
33 PHA02876 ankyrin repeat protei 99.9 1.9E-24 4.1E-29 260.9 23.4 197 536-732 172-402 (682)
34 KOG0510 Ankyrin repeat protein 99.9 7.4E-25 1.6E-29 242.7 16.7 198 535-732 147-368 (929)
35 KOG0508 Ankyrin repeat protein 99.9 2.5E-25 5.3E-30 231.9 11.9 185 548-732 10-210 (615)
36 PHA02798 ankyrin-like protein; 99.9 3.1E-24 6.6E-29 248.7 21.5 186 548-733 44-286 (489)
37 PHA02989 ankyrin repeat protei 99.9 5.3E-24 1.1E-28 247.0 22.4 192 541-733 68-284 (494)
38 KOG0510 Ankyrin repeat protein 99.9 1.8E-24 4E-29 239.7 17.3 198 534-731 179-403 (929)
39 PLN03192 Voltage-dependent pot 99.9 2.9E-22 6.3E-27 245.0 38.1 176 554-733 506-683 (823)
40 PHA02917 ankyrin-like protein; 99.9 6.6E-24 1.4E-28 249.4 22.1 190 537-729 27-254 (661)
41 PHA02730 ankyrin-like protein; 99.9 1E-23 2.2E-28 240.8 20.3 190 537-726 36-258 (672)
42 PHA02917 ankyrin-like protein; 99.9 4.5E-23 9.7E-28 242.4 21.0 179 555-733 12-224 (661)
43 KOG0502 Integral membrane anky 99.9 1.4E-23 3.1E-28 198.2 13.0 188 537-726 91-280 (296)
44 KOG4177 Ankyrin [Cell wall/mem 99.9 3.3E-24 7.1E-29 253.3 10.0 191 540-730 405-631 (1143)
45 PHA02859 ankyrin repeat protei 99.9 4E-22 8.8E-27 203.0 19.2 157 573-732 19-186 (209)
46 KOG4177 Ankyrin [Cell wall/mem 99.9 6.8E-23 1.5E-27 242.2 15.2 184 537-720 469-659 (1143)
47 PHA02792 ankyrin-like protein; 99.9 4.6E-22 9.9E-27 224.7 18.4 195 539-733 102-438 (631)
48 KOG0505 Myosin phosphatase, re 99.9 1.2E-22 2.7E-27 217.0 12.3 190 541-730 39-256 (527)
49 PHA02730 ankyrin-like protein; 99.9 1.3E-21 2.7E-26 223.7 19.2 197 535-732 228-525 (672)
50 PHA02792 ankyrin-like protein; 99.9 2.2E-21 4.8E-26 219.2 20.7 194 536-731 169-479 (631)
51 KOG0514 Ankyrin repeat protein 99.9 2.2E-22 4.7E-27 203.9 11.0 161 568-729 261-431 (452)
52 PHA02795 ankyrin-like protein; 99.9 5.2E-21 1.1E-25 209.0 17.4 172 557-733 64-249 (437)
53 KOG3713 Voltage-gated K+ chann 99.9 5.8E-21 1.3E-25 204.2 17.1 237 62-330 174-444 (477)
54 PHA02743 Viral ankyrin protein 99.9 5.4E-21 1.2E-25 187.3 15.2 137 540-706 18-162 (166)
55 KOG0512 Fetal globin-inducing 99.9 5E-21 1.1E-25 174.5 13.5 146 541-717 62-210 (228)
56 TIGR00870 trp transient-recept 99.8 6.5E-21 1.4E-25 232.1 15.8 187 538-728 48-280 (743)
57 PHA02743 Viral ankyrin protein 99.8 1.3E-20 2.8E-25 184.7 14.0 142 564-733 9-156 (166)
58 PHA02741 hypothetical protein; 99.8 1.3E-20 2.9E-25 185.5 13.7 136 568-730 14-157 (169)
59 PHA02884 ankyrin repeat protei 99.8 4.5E-20 9.8E-25 194.4 17.3 152 539-729 30-186 (300)
60 PHA02741 hypothetical protein; 99.8 6.8E-20 1.5E-24 180.5 15.3 138 532-699 11-159 (169)
61 KOG0507 CASK-interacting adapt 99.8 3E-20 6.5E-25 205.0 12.3 186 540-726 80-278 (854)
62 PHA02736 Viral ankyrin protein 99.8 1.4E-19 3E-24 175.8 11.2 134 568-731 10-152 (154)
63 PHA02736 Viral ankyrin protein 99.8 2.7E-19 5.9E-24 173.7 12.2 131 537-699 12-153 (154)
64 PHA02884 ankyrin repeat protei 99.8 1.1E-18 2.3E-23 184.0 16.1 127 569-726 26-158 (300)
65 KOG0507 CASK-interacting adapt 99.8 3.1E-19 6.8E-24 197.1 11.8 193 537-730 44-246 (854)
66 KOG1419 Voltage-gated K+ chann 99.8 1.1E-18 2.5E-23 186.1 14.0 264 65-354 80-353 (654)
67 KOG0502 Integral membrane anky 99.8 5.8E-19 1.3E-23 167.2 10.1 188 546-733 66-254 (296)
68 KOG0195 Integrin-linked kinase 99.8 1.8E-18 3.8E-23 169.9 9.9 150 550-730 8-158 (448)
69 KOG0514 Ankyrin repeat protein 99.8 4.4E-18 9.6E-23 172.9 11.8 157 537-694 263-429 (452)
70 KOG0512 Fetal globin-inducing 99.7 9.1E-18 2E-22 153.4 11.0 118 578-726 66-185 (228)
71 KOG0195 Integrin-linked kinase 99.7 1E-17 2.2E-22 164.7 9.2 127 523-680 15-141 (448)
72 KOG3676 Ca2+-permeable cation 99.7 9.4E-17 2E-21 180.5 13.4 185 544-728 103-331 (782)
73 PF12796 Ank_2: Ankyrin repeat 99.7 2.2E-16 4.7E-21 137.8 11.4 86 546-635 1-86 (89)
74 KOG4369 RTK signaling protein 99.7 3.1E-17 6.8E-22 185.5 7.3 191 538-728 753-949 (2131)
75 cd00204 ANK ankyrin repeats; 99.7 1.1E-15 2.4E-20 142.2 15.9 125 570-725 2-126 (126)
76 KOG0505 Myosin phosphatase, re 99.7 2E-16 4.3E-21 169.9 11.9 155 578-732 43-225 (527)
77 PF12796 Ank_2: Ankyrin repeat 99.7 3.4E-16 7.4E-21 136.6 11.2 87 579-669 1-89 (89)
78 TIGR00870 trp transient-recept 99.7 2.9E-16 6.4E-21 191.4 14.8 175 539-713 79-298 (743)
79 KOG4369 RTK signaling protein 99.6 1.3E-16 2.9E-21 180.4 6.8 196 538-733 786-987 (2131)
80 KOG1545 Voltage-gated shaker-l 99.6 4.7E-17 1E-21 164.7 2.7 181 108-320 253-450 (507)
81 cd00204 ANK ankyrin repeats; 99.6 2E-14 4.2E-19 133.7 15.0 122 540-692 5-126 (126)
82 PRK09392 ftrB transcriptional 99.6 2.4E-14 5.2E-19 149.6 14.2 149 388-536 6-154 (236)
83 KOG4214 Myotrophin and similar 99.5 3E-14 6.6E-19 116.5 9.0 82 545-627 5-86 (117)
84 KOG3676 Ca2+-permeable cation 99.5 1.1E-13 2.4E-18 156.1 16.6 163 532-694 133-330 (782)
85 PF00520 Ion_trans: Ion transp 99.5 2.2E-14 4.8E-19 145.6 9.8 188 112-312 1-200 (200)
86 COG0666 Arp FOG: Ankyrin repea 99.5 8.4E-14 1.8E-18 144.3 14.3 133 568-728 66-203 (235)
87 KOG1420 Ca2+-activated K+ chan 99.5 1.3E-14 2.9E-19 154.6 8.1 234 112-399 166-418 (1103)
88 KOG4214 Myotrophin and similar 99.5 6.8E-14 1.5E-18 114.5 8.3 74 540-613 32-105 (117)
89 COG0666 Arp FOG: Ankyrin repea 99.5 1.8E-13 3.8E-18 141.9 13.2 125 540-695 71-203 (235)
90 PRK11753 DNA-binding transcrip 99.5 8.7E-13 1.9E-17 135.4 14.8 126 398-523 6-133 (211)
91 KOG1710 MYND Zn-finger and ank 99.4 3.6E-13 7.7E-18 133.1 10.5 123 544-729 14-136 (396)
92 KOG0515 p53-interacting protei 99.4 4.1E-13 8.9E-18 142.5 9.8 119 545-693 553-673 (752)
93 PF13857 Ank_5: Ankyrin repeat 99.4 1.4E-13 3E-18 107.7 4.6 55 658-712 1-56 (56)
94 PF13857 Ank_5: Ankyrin repeat 99.4 2.1E-13 4.6E-18 106.7 4.7 55 561-615 1-56 (56)
95 PTZ00322 6-phosphofructo-2-kin 99.4 1.2E-12 2.5E-17 155.9 13.1 104 578-712 85-195 (664)
96 PTZ00322 6-phosphofructo-2-kin 99.4 1.8E-12 3.9E-17 154.3 13.1 87 544-630 84-170 (664)
97 KOG0515 p53-interacting protei 99.4 1.4E-12 3.1E-17 138.4 9.3 117 579-726 554-673 (752)
98 KOG1710 MYND Zn-finger and ank 99.4 3.4E-12 7.3E-17 126.3 11.2 118 511-629 15-133 (396)
99 cd00038 CAP_ED effector domain 99.4 6.3E-12 1.4E-16 114.7 12.5 112 396-507 1-113 (115)
100 PRK10402 DNA-binding transcrip 99.4 2.9E-12 6.3E-17 132.7 11.3 113 407-519 26-139 (226)
101 COG0664 Crp cAMP-binding prote 99.3 9.5E-12 2.1E-16 127.8 12.6 132 392-523 3-135 (214)
102 PF13637 Ank_4: Ankyrin repeat 99.3 2.7E-12 5.8E-17 99.9 6.4 54 575-628 1-54 (54)
103 PF00027 cNMP_binding: Cyclic 99.3 7.9E-12 1.7E-16 109.2 10.0 89 415-503 2-91 (91)
104 KOG4390 Voltage-gated A-type K 99.3 1E-13 2.2E-18 141.8 -4.1 175 109-314 228-407 (632)
105 PRK11161 fumarate/nitrate redu 99.3 2E-11 4.4E-16 127.5 13.0 130 391-521 15-146 (235)
106 smart00100 cNMP Cyclic nucleot 99.3 3.4E-11 7.3E-16 110.6 13.0 114 396-509 1-117 (120)
107 PF07885 Ion_trans_2: Ion chan 99.3 2.6E-11 5.6E-16 102.6 10.4 77 222-317 2-78 (79)
108 PF13637 Ank_4: Ankyrin repeat 99.3 7.5E-12 1.6E-16 97.4 6.2 54 672-725 1-54 (54)
109 COG2905 Predicted signal-trans 99.3 1.2E-10 2.5E-15 127.0 16.5 132 388-522 6-137 (610)
110 KOG1113 cAMP-dependent protein 99.2 1.8E-11 3.8E-16 125.9 7.8 123 388-514 121-243 (368)
111 TIGR03697 NtcA_cyano global ni 99.2 8.7E-11 1.9E-15 118.7 10.5 103 420-522 1-106 (193)
112 PRK09391 fixK transcriptional 99.1 2E-10 4.4E-15 119.1 11.4 125 407-534 33-158 (230)
113 KOG0614 cGMP-dependent protein 99.1 7.4E-11 1.6E-15 126.3 7.5 117 384-500 267-386 (732)
114 KOG0614 cGMP-dependent protein 99.1 1.3E-10 2.8E-15 124.4 6.6 129 382-514 147-275 (732)
115 PLN02868 acyl-CoA thioesterase 99.1 9.5E-10 2.1E-14 124.2 13.7 117 388-506 7-123 (413)
116 PRK13918 CRP/FNR family transc 99.1 6.3E-10 1.4E-14 113.3 10.7 103 411-520 5-110 (202)
117 KOG2384 Major histocompatibili 99.0 2.4E-09 5.2E-14 100.4 9.2 147 662-810 2-149 (223)
118 KOG0506 Glutaminase (contains 98.9 8.5E-10 1.8E-14 116.5 5.3 101 531-631 495-596 (622)
119 KOG0506 Glutaminase (contains 98.9 1.4E-09 3E-14 114.9 4.9 88 642-729 509-597 (622)
120 KOG1113 cAMP-dependent protein 98.9 3E-09 6.6E-14 109.7 7.0 115 384-501 235-349 (368)
121 PF13606 Ank_3: Ankyrin repeat 98.8 1E-08 2.2E-13 68.3 4.0 30 671-700 1-30 (30)
122 KOG0818 GTPase-activating prot 98.7 2.9E-08 6.4E-13 105.5 9.5 88 542-629 133-221 (669)
123 PRK10537 voltage-gated potassi 98.7 2.1E-07 4.6E-12 102.9 16.8 54 263-316 168-221 (393)
124 KOG0782 Predicted diacylglycer 98.7 2.4E-08 5.1E-13 107.3 8.3 122 579-729 870-991 (1004)
125 KOG0783 Uncharacterized conser 98.7 7.3E-09 1.6E-13 116.1 4.3 95 557-682 32-129 (1267)
126 KOG0818 GTPase-activating prot 98.7 3.5E-08 7.6E-13 104.9 9.0 85 641-725 135-220 (669)
127 PF13606 Ank_3: Ankyrin repeat 98.7 1.6E-08 3.5E-13 67.3 4.0 30 574-603 1-30 (30)
128 PF00023 Ank: Ankyrin repeat H 98.7 2.5E-08 5.5E-13 68.5 4.1 33 671-703 1-33 (33)
129 PF00023 Ank: Ankyrin repeat H 98.7 3.1E-08 6.6E-13 68.1 4.1 33 574-606 1-33 (33)
130 KOG0522 Ankyrin repeat protein 98.6 8.2E-08 1.8E-12 103.9 8.1 90 541-630 19-110 (560)
131 KOG0782 Predicted diacylglycer 98.6 1.4E-07 3.1E-12 101.5 8.7 118 545-693 869-988 (1004)
132 KOG0705 GTPase-activating prot 98.5 2E-07 4.4E-12 101.1 8.2 92 640-731 625-720 (749)
133 KOG0705 GTPase-activating prot 98.5 3.5E-07 7.5E-12 99.3 8.3 90 544-633 626-719 (749)
134 KOG3609 Receptor-activated Ca2 98.4 8.5E-07 1.8E-11 101.8 10.8 133 544-704 27-163 (822)
135 KOG0783 Uncharacterized conser 98.4 1.3E-07 2.7E-12 106.5 4.0 80 538-617 48-128 (1267)
136 KOG0520 Uncharacterized conser 98.4 8.3E-07 1.8E-11 104.1 9.7 128 570-728 569-703 (975)
137 KOG0522 Ankyrin repeat protein 98.3 9.8E-07 2.1E-11 95.8 7.6 64 662-725 45-108 (560)
138 PF08412 Ion_trans_N: Ion tran 98.3 6.8E-07 1.5E-11 73.0 4.4 46 61-106 29-74 (77)
139 KOG2968 Predicted esterase of 98.2 2.3E-06 4.9E-11 97.9 5.8 113 404-516 500-613 (1158)
140 KOG0521 Putative GTPase activa 98.1 1.5E-06 3.3E-11 103.1 4.4 89 639-727 656-744 (785)
141 KOG2384 Major histocompatibili 98.1 7.3E-06 1.6E-10 77.4 7.0 68 565-632 2-70 (223)
142 KOG3684 Ca2+-activated K+ chan 98.1 7.6E-05 1.6E-09 80.2 15.0 91 260-358 284-374 (489)
143 KOG0511 Ankyrin repeat protein 98.0 8E-06 1.7E-10 84.7 6.9 85 640-727 37-121 (516)
144 KOG0520 Uncharacterized conser 98.0 6.3E-06 1.4E-10 96.9 5.6 131 538-694 570-702 (975)
145 PF01007 IRK: Inward rectifier 98.0 3.3E-05 7.2E-10 83.3 10.4 95 219-320 42-143 (336)
146 KOG0511 Ankyrin repeat protein 98.0 1.9E-05 4.1E-10 82.0 7.4 70 544-613 38-107 (516)
147 KOG0521 Putative GTPase activa 97.9 1E-05 2.2E-10 96.3 4.8 84 542-625 656-739 (785)
148 KOG1418 Tandem pore domain K+ 97.9 9.6E-05 2.1E-09 84.7 12.9 58 263-320 115-172 (433)
149 KOG3609 Receptor-activated Ca2 97.8 8.6E-05 1.9E-09 85.8 10.5 132 574-733 24-159 (822)
150 KOG2302 T-type voltage-gated C 97.5 0.0031 6.8E-08 73.2 16.8 125 65-201 1101-1242(1956)
151 KOG3193 K+ channel subunit [In 97.5 0.00031 6.8E-09 76.1 8.5 56 263-318 217-272 (1087)
152 KOG4404 Tandem pore domain K+ 97.4 0.00043 9.4E-09 71.3 8.2 58 263-320 186-251 (350)
153 KOG4404 Tandem pore domain K+ 97.1 0.00012 2.6E-09 75.2 0.3 52 263-314 80-131 (350)
154 KOG2505 Ankyrin repeat protein 97.0 0.00098 2.1E-08 72.2 5.8 70 653-725 405-480 (591)
155 PLN03223 Polycystin cation cha 97.0 0.039 8.4E-07 67.5 19.1 57 73-129 1170-1234(1634)
156 KOG2968 Predicted esterase of 96.9 0.0037 7.9E-08 72.6 9.9 112 407-518 110-229 (1158)
157 KOG3827 Inward rectifier K+ ch 96.8 0.012 2.5E-07 62.7 11.4 100 217-318 66-169 (400)
158 PRK11832 putative DNA-binding 96.7 0.041 8.9E-07 54.7 13.7 105 405-513 15-120 (207)
159 smart00248 ANK ankyrin repeats 96.6 0.0035 7.6E-08 40.4 4.0 29 671-699 1-29 (30)
160 smart00248 ANK ankyrin repeats 96.5 0.0041 9E-08 40.0 4.0 29 574-602 1-29 (30)
161 PF04831 Popeye: Popeye protei 96.2 0.19 4E-06 46.9 14.0 107 399-509 14-127 (153)
162 KOG2505 Ankyrin repeat protein 96.0 0.0073 1.6E-07 65.7 4.9 62 555-616 404-471 (591)
163 PF06128 Shigella_OspC: Shigel 95.4 0.1 2.2E-06 51.4 9.5 120 544-697 155-279 (284)
164 KOG1418 Tandem pore domain K+ 95.2 0.0066 1.4E-07 69.4 0.9 47 263-309 242-296 (433)
165 KOG3542 cAMP-regulated guanine 95.0 0.061 1.3E-06 60.5 7.3 110 387-500 279-390 (1283)
166 PF03607 DCX: Doublecortin; I 94.4 0.061 1.3E-06 42.4 4.1 49 837-885 9-59 (60)
167 KOG0498 K+-channel ERG and rel 94.2 2.2 4.7E-05 50.9 18.2 44 593-636 594-637 (727)
168 KOG3614 Ca2+/Mg2+-permeable ca 93.9 2.1 4.6E-05 53.1 17.5 247 76-347 791-1075(1381)
169 PF03158 DUF249: Multigene fam 93.1 0.55 1.2E-05 45.2 8.7 77 539-623 43-119 (192)
170 KOG2301 Voltage-gated Ca2+ cha 92.5 3.6 7.8E-05 53.5 17.5 78 110-204 475-553 (1592)
171 cd06535 CIDE_N_CAD CIDE_N doma 92.3 0.23 5E-06 40.5 4.4 56 831-886 15-77 (77)
172 smart00266 CAD Domains present 92.1 0.15 3.3E-06 41.3 3.1 51 831-881 13-69 (74)
173 KOG2301 Voltage-gated Ca2+ cha 91.4 1.3 2.9E-05 57.2 12.0 126 81-224 842-971 (1592)
174 cd06536 CIDE_N_ICAD CIDE_N dom 90.8 0.22 4.8E-06 41.1 2.8 50 832-881 16-73 (80)
175 PF02017 CIDE-N: CIDE-N domain 90.6 0.36 7.9E-06 39.8 4.0 50 832-881 16-71 (78)
176 PF03158 DUF249: Multigene fam 90.2 4.6 0.0001 39.1 11.5 138 577-726 48-191 (192)
177 cd01615 CIDE_N CIDE_N domain, 90.0 0.4 8.6E-06 39.5 3.6 51 831-881 15-71 (78)
178 smart00537 DCX Domain in the D 89.6 1.3 2.9E-05 37.9 6.9 72 814-885 4-83 (89)
179 KOG3599 Ca2+-modulated nonsele 89.6 24 0.00052 43.1 19.8 23 108-130 498-520 (798)
180 cd06538 CIDE_N_FSP27 CIDE_N do 89.5 0.35 7.7E-06 39.7 3.0 51 831-881 15-70 (79)
181 cd06537 CIDE_N_B CIDE_N domain 88.9 0.42 9E-06 39.4 3.0 50 832-881 16-70 (81)
182 cd06539 CIDE_N_A CIDE_N domain 88.8 0.42 9.2E-06 39.1 3.0 49 833-881 17-71 (78)
183 PF00520 Ion_trans: Ion transp 88.8 2.7 5.9E-05 41.7 9.8 60 180-239 64-124 (200)
184 PF00060 Lig_chan: Ligand-gate 88.5 0.8 1.7E-05 43.5 5.4 75 260-340 41-115 (148)
185 PF08016 PKD_channel: Polycyst 85.6 29 0.00063 39.6 16.8 53 77-129 209-263 (425)
186 PF06128 Shigella_OspC: Shigel 85.0 4.8 0.0001 40.1 8.4 93 541-634 178-280 (284)
187 COG4709 Predicted membrane pro 84.1 5.7 0.00012 38.5 8.3 77 330-408 7-86 (195)
188 KOG3542 cAMP-regulated guanine 82.7 1.8 4E-05 49.2 5.1 90 388-489 36-125 (1283)
189 PF08006 DUF1700: Protein of u 78.4 11 0.00023 37.4 8.6 56 330-387 7-65 (181)
190 cd01617 DCX Ubiquitin-like dom 75.8 12 0.00025 31.4 6.8 51 836-886 25-79 (80)
191 KOG0500 Cyclic nucleotide-gate 72.9 1.7E+02 0.0038 33.1 20.6 43 371-413 258-305 (536)
192 PF11929 DUF3447: Domain of un 71.9 5.7 0.00012 32.9 4.0 46 545-597 9-54 (76)
193 PF11929 DUF3447: Domain of un 71.3 7 0.00015 32.4 4.4 48 577-631 8-55 (76)
194 PLN03223 Polycystin cation cha 62.7 1.5E+02 0.0032 38.1 14.5 27 293-319 1399-1425(1634)
195 KOG2302 T-type voltage-gated C 61.5 93 0.002 38.1 12.1 51 82-132 1444-1495(1956)
196 PF07883 Cupin_2: Cupin domain 61.0 35 0.00076 27.2 6.7 44 415-463 3-47 (71)
197 KOG4440 NMDA selective glutama 59.0 20 0.00042 41.1 6.0 97 218-318 572-668 (993)
198 PF14377 DUF4414: Domain of un 48.5 40 0.00086 30.1 5.3 46 340-385 51-105 (108)
199 COG3212 Predicted membrane pro 47.5 23 0.0005 33.4 3.8 35 834-879 80-114 (144)
200 cd01812 BAG1_N Ubiquitin-like 46.3 24 0.00051 28.5 3.3 47 836-882 19-71 (71)
201 KOG1053 Glutamate-gated NMDA-t 44.4 3.1E+02 0.0067 33.6 12.7 48 269-318 617-664 (1258)
202 KOG1054 Glutamate-gated AMPA-t 44.1 20 0.00044 40.8 3.3 53 263-316 595-647 (897)
203 cd01796 DDI1_N DNA damage indu 43.2 22 0.00048 28.9 2.6 43 837-879 20-69 (71)
204 cd01804 midnolin_N Ubiquitin-l 43.0 50 0.0011 27.4 4.8 45 837-884 22-74 (78)
205 KOG1052 Glutamate-gated kainat 42.7 81 0.0018 38.3 8.6 55 264-319 382-436 (656)
206 cd00196 UBQ Ubiquitin-like pro 42.1 49 0.0011 24.7 4.6 46 836-881 17-68 (69)
207 PF14560 Ubiquitin_2: Ubiquiti 40.7 1.2E+02 0.0026 25.6 7.0 65 817-881 3-82 (87)
208 PF14377 DUF4414: Domain of un 39.8 52 0.0011 29.4 4.7 49 341-389 8-68 (108)
209 PF04791 LMBR1: LMBR1-like mem 39.3 5.5E+02 0.012 29.5 14.5 21 296-316 173-193 (471)
210 smart00835 Cupin_1 Cupin. This 37.7 84 0.0018 29.6 6.1 54 411-464 31-86 (146)
211 PF10011 DUF2254: Predicted me 37.4 2.1E+02 0.0045 31.9 10.1 61 260-320 97-157 (371)
212 TIGR00769 AAA ADP/ATP carrier 37.3 4.9E+02 0.011 30.1 13.2 54 222-303 123-177 (472)
213 cd01799 Hoil1_N Ubiquitin-like 36.8 58 0.0013 26.9 4.2 43 837-879 23-72 (75)
214 PF05899 Cupin_3: Protein of u 36.6 76 0.0016 26.0 4.9 42 417-464 14-55 (74)
215 TIGR03037 anthran_nbaC 3-hydro 35.6 1.4E+02 0.0029 28.8 6.9 68 418-492 36-104 (159)
216 PRK06437 hypothetical protein; 35.6 54 0.0012 26.4 3.7 41 837-881 21-62 (67)
217 KOG3836 HLH transcription fact 34.7 10 0.00022 43.6 -0.9 60 549-608 403-462 (605)
218 COG2981 CysZ Uncharacterized p 34.6 5.2E+02 0.011 26.5 12.1 70 292-386 71-140 (250)
219 PF13314 DUF4083: Domain of un 33.0 2.3E+02 0.0049 22.0 6.2 47 291-337 6-55 (58)
220 PRK13290 ectC L-ectoine syntha 30.9 2.2E+02 0.0047 26.2 7.4 69 413-489 38-106 (125)
221 KOG0513 Ca2+-independent phosp 30.5 21 0.00046 41.1 0.8 42 644-685 141-182 (503)
222 KOG0292 Vesicle coat complex C 30.2 74 0.0016 38.5 5.0 41 466-506 559-599 (1202)
223 PRK07668 hypothetical protein; 29.5 1.5E+02 0.0033 30.9 6.7 62 324-385 4-66 (254)
224 TIGR00933 2a38 potassium uptak 28.4 1.2E+02 0.0025 34.2 6.3 118 217-354 198-328 (390)
225 KOG2378 cAMP-regulated guanine 27.7 52 0.0011 36.5 3.0 43 459-501 1-44 (573)
226 PF02037 SAP: SAP domain; Int 27.4 1.4E+02 0.003 20.5 4.1 26 329-354 5-35 (35)
227 cd00565 ThiS ThiaminS ubiquiti 26.8 1.2E+02 0.0026 24.0 4.4 41 837-881 15-60 (65)
228 KOG1277 Endosomal membrane pro 26.7 8.1E+02 0.018 27.8 11.7 22 150-171 445-466 (593)
229 PRK09108 type III secretion sy 26.3 5.8E+02 0.013 28.2 10.9 63 289-351 178-240 (353)
230 cd01792 ISG15_repeat1 ISG15 ub 26.1 1E+02 0.0022 25.6 4.0 46 836-881 22-75 (80)
231 KOG3713 Voltage-gated K+ chann 26.0 2.8E+02 0.006 31.6 8.3 37 93-132 261-297 (477)
232 PF07077 DUF1345: Protein of u 25.9 3.8E+02 0.0083 26.4 8.5 49 262-310 131-179 (180)
233 KOG1709 Guanidinoacetate methy 25.4 50 0.0011 33.1 2.2 39 692-730 2-40 (271)
234 COG3718 IolB Uncharacterized e 24.6 2.1E+02 0.0046 29.1 6.3 67 412-491 31-110 (270)
235 KOG1545 Voltage-gated shaker-l 24.5 2.5E+02 0.0055 30.4 7.2 24 113-136 287-310 (507)
236 PF02597 ThiS: ThiS family; I 24.4 99 0.0022 25.2 3.7 46 836-881 21-72 (77)
237 KOG0513 Ca2+-independent phosp 24.1 2.3 5.1E-05 48.6 -8.2 75 544-621 108-182 (503)
238 PF03671 Ufm1: Ubiquitin fold 23.9 2.3E+02 0.0051 23.0 5.2 38 828-865 15-56 (76)
239 PRK08156 type III secretion sy 23.6 7.2E+02 0.016 27.6 11.0 59 292-350 174-232 (361)
240 cd01806 Nedd8 Nebb8-like ubiq 23.4 2.1E+02 0.0046 23.0 5.5 47 836-882 20-72 (76)
241 PRK07440 hypothetical protein; 23.3 1.9E+02 0.0041 23.4 5.0 42 836-881 19-65 (70)
242 PRK05659 sulfur carrier protei 23.1 1.7E+02 0.0038 23.1 4.7 48 830-881 7-61 (66)
243 cd01809 Scythe_N Ubiquitin-lik 23.0 1.9E+02 0.0041 23.0 5.1 45 836-880 20-70 (72)
244 cd00754 MoaD Ubiquitin domain 22.8 97 0.0021 25.5 3.3 45 837-881 26-75 (80)
245 cd01805 RAD23_N Ubiquitin-like 22.7 2.2E+02 0.0047 23.1 5.4 45 837-881 21-73 (77)
246 COG5559 Uncharacterized conser 22.6 89 0.0019 24.1 2.6 19 369-387 6-24 (65)
247 TIGR01683 thiS thiamine biosyn 22.3 1.9E+02 0.0041 22.8 4.7 48 830-881 5-59 (64)
248 PF08566 Pam17: Mitochondrial 22.2 5.5E+02 0.012 25.0 8.4 59 289-347 74-135 (173)
249 PRK13109 flhB flagellar biosyn 22.1 7.8E+02 0.017 27.2 10.9 59 292-350 188-246 (358)
250 PRK05702 flhB flagellar biosyn 21.7 8E+02 0.017 27.2 10.9 62 289-350 183-244 (359)
251 PRK12721 secretion system appa 21.3 8.3E+02 0.018 26.9 10.9 62 290-351 177-238 (349)
252 TIGR00328 flhB flagellar biosy 20.4 9.8E+02 0.021 26.3 11.2 63 289-351 176-238 (347)
253 PRK12468 flhB flagellar biosyn 20.3 8.8E+02 0.019 27.2 11.0 59 293-351 187-245 (386)
254 TIGR01687 moaD_arch MoaD famil 20.2 89 0.0019 26.4 2.6 45 837-881 25-83 (88)
No 1
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=2.9e-130 Score=1191.92 Aligned_cols=781 Identities=46% Similarity=0.800 Sum_probs=695.9
Q ss_pred cccccCCCCCCCccccccccccccccceEECCCCchHHHHHHHHHHHHHHHHHhhhheeecccC-CCCCcchhhHHHHHH
Q 002728 42 SQISISDGILPSLGVTARSCRRITLRRFIISPFEPRYRLWETFLVFLVFYTAWACPFEFGFLNQ-PSRPLAITDNVVNAI 120 (887)
Q Consensus 42 ~~~~~~~~~lp~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~-~~~~~~~~~~~~~~~ 120 (887)
+.-++++++||++|+...+.+....++|||+|+++++++|+.+++++++|++|++||+++|... +...+.++|+++|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~ 104 (823)
T PLN03192 25 SLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLF 104 (823)
T ss_pred ehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHH
Confidence 3456889999999996557788889999999999999999999999999999999999999754 345688999999999
Q ss_pred HHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhhhhhhhhhccchhhhhhhccch---hhHhhHHHHHHHHHHHHHHH
Q 002728 121 FAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTWLTFDVISTIPSEAGRKFLPSA---LQAYGYFNMLRLWRLRRVSR 197 (887)
Q Consensus 121 f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~f~~Dlis~lP~~~~~~~~~~~---~~~~~~~~llrl~rl~r~~~ 197 (887)
|++||+++|+|||+|++++.+|+||++|++||+|+||++|++|++|++++..+.... ...+.+++++|+||+.|+.+
T Consensus 105 F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~ 184 (823)
T PLN03192 105 FAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQ 184 (823)
T ss_pred HHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875544322 23567889999999999999
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccc
Q 002728 198 LFARLEKDRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTT 277 (887)
Q Consensus 198 ~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltT 277 (887)
++.++++..++++.+.++.++++++++++||+||+||+++..++..+.+|++....++.+.++|.+|++|+||+++||||
T Consensus 185 ~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtT 264 (823)
T PLN03192 185 LFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTT 264 (823)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998877788899998778899999999999999999999999
Q ss_pred cccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 002728 278 TGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLR 357 (887)
Q Consensus 278 vGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~ 357 (887)
|||||++|+|+.|++|++++|++|+++|||+||+|++++.+.++++++|+++++.+++||++++||++||+||++|++++
T Consensus 265 VGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~ 344 (823)
T PLN03192 265 VGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLR 344 (823)
T ss_pred ccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccHHHHHHhccHHHHHHHHHHHHHhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEE
Q 002728 358 HRTDSEGLQQQEIIESLPKAIQSSISHFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILV 437 (887)
Q Consensus 358 ~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~ 437 (887)
|+. ++.++++++++||++||.+|+++++.++++++++|+++|++++.+++..+++++|+|||.|+.|||.++++|||+
T Consensus 345 ~~~--~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~ 422 (823)
T PLN03192 345 FKA--ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVV 422 (823)
T ss_pred Hhh--ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEE
Confidence 976 468899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eceEEEEEecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHh
Q 002728 438 TGAMELITRKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLK 517 (887)
Q Consensus 438 ~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk 517 (887)
+|.|+++...+|++.++..+++|++|||++++++.|++++++|.+.|+++++++++|.++++.+|++...+++++.++.+
T Consensus 423 ~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~ 502 (823)
T PLN03192 423 SGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHK 502 (823)
T ss_pred ecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99999998777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccchhhHHHhhcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 002728 518 DLGDPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597 (887)
Q Consensus 518 ~~~~~~~e~l~~d~e~~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 597 (887)
+..+..+..+..+.+.. ..+.++.++||.||..|+.++++.|+++|+|+|..|.+|+||||+||.+|+.+++++|+++
T Consensus 503 ~l~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 580 (823)
T PLN03192 503 ELHDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH 580 (823)
T ss_pred hhccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhc
Confidence 88877666655544433 4556778999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhH
Q 002728 598 GADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLH 677 (887)
Q Consensus 598 gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh 677 (887)
|+|+|.+|.+|+||||+|+..||.+++++|++.++..+..+.++++|.|+..|+.++++.|+++|+|+|.+|.+|+||||
T Consensus 581 gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh 660 (823)
T PLN03192 581 ACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ 660 (823)
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHhcCCHHHHHHHhcCCCCCCCCcccCCCCCCCCCccccccccCC
Q 002728 678 VAISEGNIEIVKFLIDQGSDIDKPDIHG-WTPRALADHQGQEDIQILLQMKPEPKKAPVLTVPKKQQAPNPRKHLVKYSS 756 (887)
Q Consensus 678 ~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g-~Tpl~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s 756 (887)
+|+.+|+.+++++|+++|||++.+|..| .||++++......+. ..... ... .
T Consensus 661 ~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~~~---------~~~~~---~~~---------------~ 713 (823)
T PLN03192 661 VAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKREL---------GHSIT---IVD---------------S 713 (823)
T ss_pred HHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHhhh---------Cceee---ecc---------------C
Confidence 9999999999999999999999999998 999988864332221 11100 000 0
Q ss_pred CCCCCC-CCcccccccccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCeEEEE--cCCC-----Ccc
Q 002728 757 EPSIPP-YTPEVVSAVPEINLLNRHSRRRPNTFHNSLFGIVSAANTGEHSINFPTVSSYPPRVTIS--CPEK-----GQV 828 (887)
Q Consensus 757 ~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~rvti~--~p~~-----~~~ 828 (887)
.|...+ ...+..+ .+ .+ .. .........+|++++ ||.. ...
T Consensus 714 ~~~~~~~~~~~~~~--------~~-~~-------------~~---------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 762 (823)
T PLN03192 714 VPADEPDLGRDGGS--------RP-GR-------------LQ---------GTSSDNQCRPRVSIYKGHPLLRNERCCNE 762 (823)
T ss_pred CCcccccccccccc--------cc-cc-------------cc---------ccccccccCceEEEecCCCcccccccccc
Confidence 000000 0000000 00 00 00 000122346788887 6643 136
Q ss_pred cceEEEccccHHHHHHHHhhhcCCCcc--ceecCCCceeeeeeeeecCCeEEEEeCCC
Q 002728 829 SGKLVLLPKSLQELLSIASTKFGFTPS--KILSKEGAEIDDVGLIRDDDHLFIVSDPA 884 (887)
Q Consensus 829 ~gkli~lp~s~~el~~~~~~~~~~~~~--~~~~~~~~~i~~~~~i~d~~~l~~~~~~~ 884 (887)
+|+++++|+|++||.++|+||||+++. .++++||||||||+|||||||||+|+++.
T Consensus 763 ~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (823)
T PLN03192 763 AGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEEGAEIDSIEVIRDNDKLFVVEDED 820 (823)
T ss_pred cCeEEeCCccHHHHHHHHHHHhCCCcccceeecCCCceeeeeEEEecCCEEEEeeccc
Confidence 999999999999999999999999974 48999999999999999999999999853
No 2
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-98 Score=847.08 Aligned_cols=565 Identities=38% Similarity=0.606 Sum_probs=499.4
Q ss_pred CcccccCCCCCC-CccccccccccccccceEECCCCchHHHHHHHHHHHHHHHHHhhhheeecccC----------CCCC
Q 002728 41 GSQISISDGILP-SLGVTARSCRRITLRRFIISPFEPRYRLWETFLVFLVFYTAWACPFEFGFLNQ----------PSRP 109 (887)
Q Consensus 41 ~~~~~~~~~~lp-~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~----------~~~~ 109 (887)
.+....+.+.+| ..+...+..+..+..++|++|+|++++.||.+++++++|++|++||+++|... ...+
T Consensus 39 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~ 118 (727)
T KOG0498|consen 39 PSVNSLSLGLLPLGLGVPEYKERVDKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAP 118 (727)
T ss_pred CCcccccccccccccCcchhhcccccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCc
Confidence 345556666666 44554455566777788999999999999999999999999999999999876 4577
Q ss_pred cchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhhhhhhhhhccchhhhhhhcc--------chhhHh
Q 002728 110 LAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTWLTFDVISTIPSEAGRKFLP--------SALQAY 181 (887)
Q Consensus 110 ~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~f~~Dlis~lP~~~~~~~~~--------~~~~~~ 181 (887)
+.++|.++|+||++||+++|+|||+++.++.+|.||++||+||+++||++|++|++|++++..+.. ......
T Consensus 119 l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~ 198 (727)
T KOG0498|consen 119 LTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILV 198 (727)
T ss_pred eeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999876543 223577
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCC-ccccc-----c
Q 002728 182 GYFNMLRLWRLRRVSRLFARLEKDRNYSY--IRVRYSKLACVTLFAVHCAACTFYLLAEHYR--DPKG-TWIGQ-----T 251 (887)
Q Consensus 182 ~~~~llrl~rl~r~~~~~~~l~~~~~~~~--~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~--~~~~-~Wi~~-----~ 251 (887)
.++.++||||+.|+.+++.+++++..+.+ .|.-++++++++++++||+||+||+++...+ .+.. +|+.. .
T Consensus 199 ~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~ 278 (727)
T KOG0498|consen 199 GILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLS 278 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccc
Confidence 88999999999999999999999999888 3444789999999999999999999998776 5666 99986 2
Q ss_pred cCC----ccCCchHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Q 002728 252 LGD----FKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFR 327 (887)
Q Consensus 252 ~~~----~~~~~~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~ 327 (887)
..+ +...+++.+|++||||+++||||+||||.+|+|..|++|+|++|++|+++|||+||||++++++.++++++||
T Consensus 279 ~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r 358 (727)
T KOG0498|consen 279 CYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMR 358 (727)
T ss_pred cCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHH
Confidence 344 7778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHHHHHHhccHHHHHHHHHHHHHhhhhhhhcccCCCHHHHHH
Q 002728 328 DTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSISHFLFYSLVDQVYLFRGVSNDLLFQ 407 (887)
Q Consensus 328 ~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lf~~~s~~~l~~ 407 (887)
.+++++++||++|+||++||+||++|++|+|+. ++|++|+++|++||++||+||++|+|.++++++|+|+++|++++.+
T Consensus 359 ~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~-t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~a 437 (727)
T KOG0498|consen 359 DKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLA-TRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDA 437 (727)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh-ccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHH
Confidence 999999999999999999999999999999976 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeee-chhhhcC-CCceeEEEEeeceE
Q 002728 408 LVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVG-ELGLLCY-KPQLFTVRTKRLSQ 485 (887)
Q Consensus 408 l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fG-e~~~l~~-~~~~~tv~a~~~~~ 485 (887)
||.++++++|+|||+|++|||++++||||++|.+++....+|.+.....+++||+|| |+...+. .|+++||+|.++|+
T Consensus 438 l~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~e 517 (727)
T KOG0498|consen 438 LCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCE 517 (727)
T ss_pred HHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhh
Confidence 999999999999999999999999999999999999998888888999999999999 8999998 99999999999999
Q ss_pred EEEeeHHHHHHHHHhccccHHHHHHH---HHHHHhhcCCCcccccchhhH-HHhhcCCCCcchHHHHHHHhCCHHHHHHH
Q 002728 486 LLRLNRTAFLSLVQANVGDGTIIMNN---LLQHLKDLGDPMMEGISTDTE-QKLARGRMDLPLSLSFAAVRGDGLLLHQL 561 (887)
Q Consensus 486 ll~l~~~~f~~ll~~~~~~~~~i~~~---l~~~lk~~~~~~~e~l~~d~e-~~la~~~~~~~~~l~~Aa~~g~~~~l~~L 561 (887)
+++|++++|.++++.+|.++..++++ +..+..+... ...+..... ....++..+.+.....++..++..-.+..
T Consensus 518 l~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~a--a~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 595 (727)
T KOG0498|consen 518 LFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWA--ACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSL 595 (727)
T ss_pred HHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhh--hhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhh
Confidence 99999999999999999999999984 4444333322 222222222 22223333333334455566666666778
Q ss_pred HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 002728 562 LRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608 (887)
Q Consensus 562 l~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G 608 (887)
+..+..++..+.+|++|+|.+++.|..++...+++++++++..+.+|
T Consensus 596 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~ 642 (727)
T KOG0498|consen 596 LRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDFSDAEG 642 (727)
T ss_pred hhcccccccccccCCCccccccccCccccccccCCCCCCCCcccccc
Confidence 88899999999999999999999999999999999999999998777
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-66 Score=540.64 Aligned_cols=416 Identities=23% Similarity=0.373 Sum_probs=378.4
Q ss_pred HHHHHHHHHHhhhheeecccCCC---CCcchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhh-hhhh
Q 002728 85 LVFLVFYTAWACPFEFGFLNQPS---RPLAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTW-LTFD 160 (887)
Q Consensus 85 ~~~~~~~~~~~~P~~~~f~~~~~---~~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~-f~~D 160 (887)
+.+.++|+.|+++.+++|.+-.. ..|..+|++.|++|++|++++.+++|+++| ++|+|-++.++||..+. |.+|
T Consensus 3 vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD 80 (536)
T KOG0500|consen 3 VSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLD 80 (536)
T ss_pred EEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhh
Confidence 45678999999999888966543 347789999999999999999999999999 69999999999999885 9999
Q ss_pred hhhccchhhhhhhccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002728 161 VISTIPSEAGRKFLPSALQAYGYFNMLRLWRLRRVSRLFARLEKDRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHY 240 (887)
Q Consensus 161 lis~lP~~~~~~~~~~~~~~~~~~~llrl~rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~ 240 (887)
++|++|++++.....+ ..+.|++|++|+.|+..++.+.+....+..+ .|+++++.+.++++||.||+||+|+...
T Consensus 81 ~l~liP~D~l~~~~~~----~~~~r~nRllk~yRl~~F~~rTetrT~~Pn~-fri~~lv~~~~ilfHWNaClYf~iS~~~ 155 (536)
T KOG0500|consen 81 VLSLIPLDLLLFKDGS----ASLERLNRLLKIYRLFEFFDRTETRTTYPNA-FRISKLVHYCLILFHWNACLYFLISKAI 155 (536)
T ss_pred hhhhcchhHHhhcCCc----chHHHHHHHHHHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHHHHHhhHHHHhhhHhc
Confidence 9999999987765443 3455688999999999999998887777766 7899999999999999999999999999
Q ss_pred cCCCCcccccccCCccCCc-----hHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002728 241 RDPKGTWIGQTLGDFKQQS-----LWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNL 315 (887)
Q Consensus 241 ~~~~~~Wi~~~~~~~~~~~-----~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~ 315 (887)
+...++|......+..-.. +..+|++|+|||..||||+| --..|.+..|.+|.|+-.++|+++||.++|+++++
T Consensus 156 g~~~d~wvY~~i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsm 234 (536)
T KOG0500|consen 156 GFTTDDWVYPKINDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSM 234 (536)
T ss_pred CccccccccCCccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHH
Confidence 8888999987554444444 99999999999999999999 67899999999999999999999999999999999
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHHHHHHhccHHHHHHHHHHHHHhhhhhhh
Q 002728 316 VVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSISHFLFYSLVDQVY 395 (887)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~ 395 (887)
+.++++...+||.+|+.+++||+.+++|..||.||.+|+.|.|.. ++..+|+++++.||+.|+.+|+.+++.+.|++++
T Consensus 235 Vtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~-~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~ 313 (536)
T KOG0500|consen 235 VTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAH-KKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR 313 (536)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-cccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999954 5678999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechhhhc-----
Q 002728 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELGLLC----- 470 (887)
Q Consensus 396 lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l~----- 470 (887)
+|+++.+.++.+++.+++++.|.|||+||++||.+.+||+|.+|.++++..+++. +...+++|++|||++++.
T Consensus 314 iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t--~~~~L~~G~~FGEisIlni~g~~ 391 (536)
T KOG0500|consen 314 IFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVT--VFVTLKAGSVFGEISILNIKGNK 391 (536)
T ss_pred HHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcE--EEEEecCCceeeeeEEEEEcCcc
Confidence 9999999999999999999999999999999999999999999999999866543 467899999999999873
Q ss_pred -CCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHH
Q 002728 471 -YKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNN 511 (887)
Q Consensus 471 -~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~ 511 (887)
+..|++++|+.++|+++.|+|+|+.+++++||+....+..+
T Consensus 392 ~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k 433 (536)
T KOG0500|consen 392 NGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK 433 (536)
T ss_pred cCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence 56689999999999999999999999999999987766644
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-65 Score=539.46 Aligned_cols=457 Identities=23% Similarity=0.411 Sum_probs=394.0
Q ss_pred ccCCCCCCCccccccccccccccceEECCCCchHHHHHHHHHHHHHHHHHhhhheeecccCC--CCCcchhhHHHHHHHH
Q 002728 45 SISDGILPSLGVTARSCRRITLRRFIISPFEPRYRLWETFLVFLVFYTAWACPFEFGFLNQP--SRPLAITDNVVNAIFA 122 (887)
Q Consensus 45 ~~~~~~lp~~~~~~~~~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~~--~~~~~~~~~~~~~~f~ 122 (887)
++++.+||.... ...+.+..||..|+.|+.+||++++++.+|+++++||.++|.+.. +..|.++|.++|++|+
T Consensus 189 ~Lg~DilPQYrQ-----EaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~ 263 (971)
T KOG0501|consen 189 QLGSDILPQYRQ-----EAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFF 263 (971)
T ss_pred Hhccccchhhhh-----cCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhh
Confidence 467888886644 445677789999999999999999999999999999999998765 4568899999999999
Q ss_pred HHHHhheeEEEEeCCceEEEeChhHHHHHHhhhhhhhhhhhccchhhhhhhccchhhHhhHHHHHHHHHHHHHHHHHHHH
Q 002728 123 IDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTWLTFDVISTIPSEAGRKFLPSALQAYGYFNMLRLWRLRRVSRLFARL 202 (887)
Q Consensus 123 ~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~llrl~rl~r~~~~~~~l 202 (887)
+||+++|.|.|+.+++. +|.|||.|+.+|+|+||++|++||+|++++..+-...-..-.+|..|+..||+|+.|.-.+|
T Consensus 264 vDIvLNFHTTFVGPgGE-VvsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKL 342 (971)
T KOG0501|consen 264 VDIVLNFHTTFVGPGGE-VVSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKL 342 (971)
T ss_pred hhhhhhcceeeecCCCc-eecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 89999999999999999999999999999877655443444556666666666666665555
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------CCCCcccccccCC------cc---------CCch
Q 002728 203 EKDRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYR-------DPKGTWIGQTLGD------FK---------QQSL 260 (887)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~-------~~~~~Wi~~~~~~------~~---------~~~~ 260 (887)
.... -|....++.|+|++.++.||+||+||.|+...- -..++|+..--.+ +. ..+.
T Consensus 343 D~Yl--EYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr 420 (971)
T KOG0501|consen 343 DHYL--EYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSR 420 (971)
T ss_pred HHHH--HhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcc
Confidence 4433 344566777899999999999999999997432 1245787431110 10 1234
Q ss_pred HHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHC
Q 002728 261 WVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRN 340 (887)
Q Consensus 261 ~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~ 340 (887)
-..|+.|+||.++.|||||||++.|.|..|++|++++|++|.++||.++|+++.+++++++.+.+|.+.++.+.+||+-.
T Consensus 421 ~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~ 500 (971)
T KOG0501|consen 421 TSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLY 500 (971)
T ss_pred cceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcccccccHHHHHHhccHHHHHHHHHHHHHhhhhhhhcccCCCHHHHHHHHHhcceeeccCC
Q 002728 341 QLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSISHFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPK 420 (887)
Q Consensus 341 ~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~ 420 (887)
++|+.|.+||.+|.-..|.. ++|++.+.+|.-.|+++|.+|+-|+..+..+.+|-|+-.|+.++..|+..++...+.||
T Consensus 501 evPK~LsERVMDYvVSTWaM-tkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APG 579 (971)
T KOG0501|consen 501 EVPKGLSERVMDYVVSTWAM-TKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPG 579 (971)
T ss_pred hccHHHHHHHHHHHHHHhhh-hcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCc
Confidence 99999999999999999954 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechhhhcC--CCceeEEEEeeceEEEEeeHHHHHHHH
Q 002728 421 EDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELGLLCY--KPQLFTVRTKRLSQLLRLNRTAFLSLV 498 (887)
Q Consensus 421 e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l~~--~~~~~tv~a~~~~~ll~l~~~~f~~ll 498 (887)
+.+++.||..|.+.||++|.++++.++ .+++.++.||+||+.--=.. ....++|||.++|.++.|.|+.+++++
T Consensus 580 DLlYHtGESvDaLcFvVsGSLEVIQDD----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VL 655 (971)
T KOG0501|consen 580 DLLYHTGESVDALCFVVSGSLEVIQDD----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVL 655 (971)
T ss_pred ceeeecCCccceEEEEEecceEEeecC----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHH
Confidence 999999999999999999999999865 48899999999998532111 224588999999999999999999999
Q ss_pred HhccccHHHHHHHHHH
Q 002728 499 QANVGDGTIIMNNLLQ 514 (887)
Q Consensus 499 ~~~~~~~~~i~~~l~~ 514 (887)
.-|..++.-+.+|+.-
T Consensus 656 dFYtAFanSFaRNl~L 671 (971)
T KOG0501|consen 656 DFYTAFANSFARNLTL 671 (971)
T ss_pred HHHHHHHHHhhhceee
Confidence 9888877777666643
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-61 Score=507.13 Aligned_cols=434 Identities=20% Similarity=0.379 Sum_probs=395.1
Q ss_pred eEECCCC-chHHHHHHHHHHHHHHHHHhhhheeecccCCC---CCcchhhHHHHHHHHHHHHh-heeEEEEeCCceEEEe
Q 002728 69 FIISPFE-PRYRLWETFLVFLVFYTAWACPFEFGFLNQPS---RPLAITDNVVNAIFAIDIIL-TFFLAYLDKATHLLVD 143 (887)
Q Consensus 69 ~ii~P~s-~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~~~---~~~~~~~~~~~~~f~~Di~l-~f~tay~~~~~~~lv~ 143 (887)
-.|||+. ++|..|-.++.++..|++|++|++.+|..+.. ..|.++|+++|++|++|+++ +=+.-|+-.| .+|.
T Consensus 218 ~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~ik 295 (815)
T KOG0499|consen 218 NSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DIIK 295 (815)
T ss_pred cccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eEEE
Confidence 4699999 89999999999999999999999999987754 45789999999999999976 6677777666 5899
Q ss_pred ChhHHHHHHhhhh-hhhhhhhccchhhhhhhccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHH
Q 002728 144 DPKKIAWRYAKTW-LTFDVISTIPSEAGRKFLPSALQAYGYFNMLRLWRLRRVSRLFARLEKDRNYSYIRVRYSKLACVT 222 (887)
Q Consensus 144 d~~~I~~~Yl~~~-f~~Dlis~lP~~~~~~~~~~~~~~~~~~~llrl~rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 222 (887)
|.+..++||+++. |-+|++|++|+++.+.++... .++|+.|+++.-.++.++..|+......|+ +|+++...++
T Consensus 296 ~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~----p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~-~RV~rT~~Ym 370 (815)
T KOG0499|consen 296 DKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFN----PMWRANRMLKYTSFFEFNHHLESIMSKAYI-YRVIRTTGYL 370 (815)
T ss_pred echHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccc----hhhhhhhHHHHHHHHHHHHHHHHHhcchhh-hhhHHHHHHH
Confidence 9999999999886 999999999999988766532 244777777777778888888877666665 8899999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHH
Q 002728 223 LFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNL 302 (887)
Q Consensus 223 l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~ 302 (887)
++++|+.||+||+.+...+...+.|+.+..++ .|+.|+||++-|++|+| |...|.|..|.+|..+-.+.|+
T Consensus 371 lyilHinacvYY~~SayqglG~~rWVydg~Gn--------~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGV 441 (815)
T KOG0499|consen 371 LYILHINACVYYWASAYQGLGTTRWVYDGEGN--------EYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGV 441 (815)
T ss_pred HHHHhhhHHHHHHHHhhcccccceeEEcCCCC--------ceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999998888888999877665 69999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHHHHHHhccHHHHHHH
Q 002728 303 GLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSI 382 (887)
Q Consensus 303 ~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i 382 (887)
++||.+||+|-.++...+.+.++||..|++.-.||++.+||...|+||+.||+|.|.. ++.+||.++|+.||..||.++
T Consensus 442 FvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~s-Qr~LDEs~ll~~LP~klq~dl 520 (815)
T KOG0499|consen 442 FVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDS-QRMLDESDLLKTLPTKLQLDL 520 (815)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhh-hccccHHHHHHhcchhheeee
Confidence 9999999999999999999999999999999999999999999999999999999965 678999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCe
Q 002728 383 SHFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDV 462 (887)
Q Consensus 383 ~~~l~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~ 462 (887)
+..++..++.++.||++|+.+.+..++.+++...|.|||+||+.||.+.+||+|..|.|.+....+|. .++.++.+|++
T Consensus 521 Ai~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~-~Vl~tL~~GsV 599 (815)
T KOG0499|consen 521 AIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGT-KVLVTLKAGSV 599 (815)
T ss_pred eEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecCCCCC-EEEEEecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999866654 57899999999
Q ss_pred eechhhhc---CCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q 002728 463 VGELGLLC---YKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLG 520 (887)
Q Consensus 463 fGe~~~l~---~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~ 520 (887)
|||+++|. +..|+++|+|.++|.++.|+++++.+++..||+....+++...+.++...
T Consensus 600 FGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkkAr~llk~na 660 (815)
T KOG0499|consen 600 FGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKKARVLLKQNA 660 (815)
T ss_pred eeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHHHHHHHHhcc
Confidence 99999884 56689999999999999999999999999999988888777766666543
No 6
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=258.59 Aligned_cols=181 Identities=31% Similarity=0.403 Sum_probs=169.1
Q ss_pred HhhcCCCCcchHHHHHHHhCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcH
Q 002728 534 KLARGRMDLPLSLSFAAVRGDGLLLHQLLR-RGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY-GADLNIRDSEGSVP 611 (887)
Q Consensus 534 ~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~-~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gad~n~~d~~G~tp 611 (887)
...+.+.|+.||||+||.-|+.++++.|++ .+..+|..|..||||||+||+.|+.++|+.|+.+ |+|+|..+..|.||
T Consensus 30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~ 109 (226)
T KOG4412|consen 30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTC 109 (226)
T ss_pred hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcce
Confidence 445677799999999999999999999995 5788899999999999999999999999999999 99999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCCCcCCCCC--chhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHH
Q 002728 612 LWEAMLGKHEPVVRILAENGALISSSDV--GHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVK 689 (887)
Q Consensus 612 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~ 689 (887)
||+|+..|..+++.+|+++|+.++..|. .+++|.|+..|+++++++|+..|+.+|.+|..|+||||.|...|+.++..
T Consensus 110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~ 189 (226)
T KOG4412|consen 110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAV 189 (226)
T ss_pred ehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHH
Confidence 9999999999999999999999988774 47889999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCHHHHHHhc
Q 002728 690 FLIDQGSDIDKPDIHGWTPRALADHQ 715 (887)
Q Consensus 690 ~Ll~~Gadv~~~d~~g~Tpl~~A~~~ 715 (887)
+|+++|||++..|+.| ||+..|+-.
T Consensus 190 lLV~~gAd~~~edke~-t~~~~a~~~ 214 (226)
T KOG4412|consen 190 LLVRAGADTDREDKEG-TALRIACNE 214 (226)
T ss_pred HHHHhccceeeccccC-chHHHHHHH
Confidence 9999999999999988 998877643
No 7
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=250.31 Aligned_cols=191 Identities=26% Similarity=0.370 Sum_probs=174.9
Q ss_pred cchHHHHHHHhCCHHHHHHHHHcCC-CCCCCC-CCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHHHhc
Q 002728 542 LPLSLSFAAVRGDGLLLHQLLRRGS-DPNELD-NNGRTALHIAASRGHEHCVVLLL-EYGADLNIRDSEGSVPLWEAMLG 618 (887)
Q Consensus 542 ~~~~l~~Aa~~g~~~~l~~Ll~~g~-~~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll-~~gad~n~~d~~G~tpL~~A~~~ 618 (887)
+.++.+.++......-++.+++... ..|.+| .+||||||+||+-|+.++|.+|+ +.+..+|.+|..||||||.||..
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~ 82 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN 82 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence 4566778888888888999998776 567665 49999999999999999999999 55889999999999999999999
Q ss_pred CCHHHHHHHHHC-CCCcCCCCCc--hhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 002728 619 KHEPVVRILAEN-GALISSSDVG--HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695 (887)
Q Consensus 619 ~~~~~v~~Ll~~-g~~~~~~~~~--~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G 695 (887)
|+.++|+-|+.+ |+++|..+.+ +.+|.|+..|..++.++|+++|+.++.+|..|.||||.||.-|+.+++++|+..|
T Consensus 83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~ 162 (226)
T KOG4412|consen 83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG 162 (226)
T ss_pred CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence 999999999999 9999987655 5667899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 696 SDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 696 adv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
|.+|.+|..|+||||+|.-.||.++..+|.+++++..
T Consensus 163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~ 199 (226)
T KOG4412|consen 163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD 199 (226)
T ss_pred CCCCcccccCccHHHHHHhccCchHHHHHHHhcccee
Confidence 9999999999999999988999999999999987643
No 8
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=8.7e-31 Score=276.11 Aligned_cols=193 Identities=18% Similarity=0.160 Sum_probs=177.7
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHh
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAML 617 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~ 617 (887)
.+.++.||||+|+..|+.++++.|++.|+++|.. +|+||||+|+..|+.++|++|+++|+++|.+|.+|+||||+|+.
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~ 103 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD 103 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 4677899999999999999999999999999875 47999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCCCcCCCCC---chhHhHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHhHHHHHcCCHHHHHHHHh
Q 002728 618 GKHEPVVRILAENGALISSSDV---GHFACTAIEQNDLLLLEKIVHYGGDVTQLT-SNGTTPLHVAISEGNIEIVKFLID 693 (887)
Q Consensus 618 ~~~~~~v~~Ll~~g~~~~~~~~---~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~ 693 (887)
.|+.+++++|+++|++++..+. .++++.|+..|+.+++++|+++|.+. .| ..|.||||+|+..|+.+++++|++
T Consensus 104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~ 181 (284)
T PHA02791 104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLD 181 (284)
T ss_pred cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999876553 25789999999999999999997653 23 358999999999999999999999
Q ss_pred CCCCCCCCCCCCCCH-HHHHHhcCCHHHHHHHhcCCCCCCCC
Q 002728 694 QGSDIDKPDIHGWTP-RALADHQGQEDIQILLQMKPEPKKAP 734 (887)
Q Consensus 694 ~Gadv~~~d~~g~Tp-l~~A~~~g~~~i~~lL~~~~~~~~~~ 734 (887)
+|||++.+|..|.|| ||+|+..|+.+++++|.++++....+
T Consensus 182 ~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~ 223 (284)
T PHA02791 182 YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSV 223 (284)
T ss_pred CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC
Confidence 999999999999987 99999999999999999999887554
No 9
>PHA02791 ankyrin-like protein; Provisional
Probab=99.96 E-value=4.3e-29 Score=263.27 Aligned_cols=186 Identities=18% Similarity=0.205 Sum_probs=170.8
Q ss_pred CcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHhcC
Q 002728 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGS-VPLWEAMLGK 619 (887)
Q Consensus 541 ~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~-tpL~~A~~~~ 619 (887)
++.||||.|+..|+.++++.|++.|+++|..|..|+||||+||..|+.+++++|+++|+++|.++..|+ ||||+|+..|
T Consensus 60 d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g 139 (284)
T PHA02791 60 ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLN 139 (284)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcC
Confidence 357999999999999999999999999999999999999999999999999999999999999999985 8999999999
Q ss_pred CHHHHHHHHHCCCCcC-CCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcH-hHHHHHcCCHHHHHHHHhCCCC
Q 002728 620 HEPVVRILAENGALIS-SSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTP-LHVAISEGNIEIVKFLIDQGSD 697 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~-~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~Tp-Lh~Aa~~g~~~~v~~Ll~~Gad 697 (887)
+.+++++|++++++.. ...+.++++.|+..|+.++++.|+++|+++|.+|..|.|| ||+|+..|+.++|++|+++|||
T Consensus 140 ~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~ 219 (284)
T PHA02791 140 DVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN 219 (284)
T ss_pred CHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Confidence 9999999999986542 2235689999999999999999999999999999999987 9999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCCC
Q 002728 698 IDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 698 v~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
++.+|..| ||+ ++.|++++|+++.++-++
T Consensus 220 in~~~~~~-~~l------~~~e~~~~ll~~~~~~~~ 248 (284)
T PHA02791 220 IYSVNLEN-VLL------DDAEIAKMIIEKHVEYKS 248 (284)
T ss_pred CccCcccC-ccC------CCHHHHHHHHHhhhhhcc
Confidence 99999954 666 788999999988766544
No 10
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=277.94 Aligned_cols=189 Identities=22% Similarity=0.252 Sum_probs=113.1
Q ss_pred chHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHH
Q 002728 543 PLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEP 622 (887)
Q Consensus 543 ~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~ 622 (887)
.++||.|+..|+.++++.|+++|+++|..+.+|.||||+|+..|+.+++++|+++|++++..+.+|.||||.|+..|+.+
T Consensus 3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 34566666666666666666666666665556666666666666666666666666666655555666666666666666
Q ss_pred HHHHHHHCCCCcCC---CCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 002728 623 VVRILAENGALISS---SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDID 699 (887)
Q Consensus 623 ~v~~Ll~~g~~~~~---~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~ 699 (887)
+++.|++.|+..+. .++.++++.|+..|+.++++.|+++|++++.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred HHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 66666665554322 223455566666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCC
Q 002728 700 KPDIHGWTPRALADHQGQEDIQILLQMKPEPK 731 (887)
Q Consensus 700 ~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~ 731 (887)
.+|..|+||||+|+..|+.+++++|.++|+..
T Consensus 163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~ 194 (413)
T PHA02875 163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194 (413)
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 66666666666666666666666666555543
No 11
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=285.21 Aligned_cols=196 Identities=26% Similarity=0.332 Sum_probs=185.9
Q ss_pred cCCCCcchHHHHHH--HhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCcHH
Q 002728 537 RGRMDLPLSLSFAA--VRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRG--HEHCVVLLLEYGADLNIRDSEGSVPL 612 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa--~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~gad~n~~d~~G~tpL 612 (887)
..+..+.||||.|+ ..|+.++++.|+++|++++..|..|.||||+|+..| +.+++++|+++|+++|.+|..|.|||
T Consensus 101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL 180 (480)
T PHA03100 101 APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPL 180 (480)
T ss_pred CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHH
Confidence 34567889999999 999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHCCCCcCCCCC--------chhHhHHHHhCC--HHHHHHHHHcCCCCccCCCCCCcHhHHHHHc
Q 002728 613 WEAMLGKHEPVVRILAENGALISSSDV--------GHFACTAIEQND--LLLLEKIVHYGGDVTQLTSNGTTPLHVAISE 682 (887)
Q Consensus 613 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------~~~~~~a~~~~~--~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~ 682 (887)
|+|+..|+.+++++|+++|++++..+. .++++.|+..++ .++++.|+++|+++|.+|..|.||||+|+..
T Consensus 181 ~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~ 260 (480)
T PHA03100 181 HIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYN 260 (480)
T ss_pred HHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 999999999999999999999886653 467789999999 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 683 GNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 683 g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
|+.+++++|+++|||++.+|..|.||+++|+..++.+++++|.+++++..
T Consensus 261 ~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 261 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 310 (480)
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999999999987543
No 12
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.96 E-value=8.6e-28 Score=277.82 Aligned_cols=192 Identities=24% Similarity=0.333 Sum_probs=168.8
Q ss_pred CCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH------------------------------
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEH------------------------------ 589 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~------------------------------ 589 (887)
...-||||.||..|+.++++.|+++|+++|..|.+|+||||+||..|+.+
T Consensus 35 ~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ 114 (477)
T PHA02878 35 LIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV 114 (477)
T ss_pred ccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence 44568999999999999999999999999999999999999999876432
Q ss_pred ----------------------------------HHHHHHhCCCCCCCCCCC-CCcHHHHHHhcCCHHHHHHHHHCCCCc
Q 002728 590 ----------------------------------CVVLLLEYGADLNIRDSE-GSVPLWEAMLGKHEPVVRILAENGALI 634 (887)
Q Consensus 590 ----------------------------------~v~~Ll~~gad~n~~d~~-G~tpL~~A~~~~~~~~v~~Ll~~g~~~ 634 (887)
++++|+++|+|+|.+|.. |.||||+|+..|+.+++++|+++|+++
T Consensus 115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~ 194 (477)
T PHA02878 115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANV 194 (477)
T ss_pred HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC
Confidence 677788889999999988 999999999999999999999999988
Q ss_pred CCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHc-CCHHHHHHHHhCCCCCCCCCC-CCCCHHH
Q 002728 635 SSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISE-GNIEIVKFLIDQGSDIDKPDI-HGWTPRA 710 (887)
Q Consensus 635 ~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gadv~~~d~-~g~Tpl~ 710 (887)
+..+ +.++++.|+..++.++++.|+++|+++|.+|..|+||||+|+.. ++.+++++|+++|++++.++. .|.||||
T Consensus 195 n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh 274 (477)
T PHA02878 195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH 274 (477)
T ss_pred CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHH
Confidence 7655 44788899999999999999999999999999999999999975 689999999999999998876 7999999
Q ss_pred HHHhcCCHHHHHHHhcCCCCCCC
Q 002728 711 LADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 711 ~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
+| .++.+++++|.+++++...
T Consensus 275 ~A--~~~~~~v~~Ll~~gadin~ 295 (477)
T PHA02878 275 SS--IKSERKLKLLLEYGADINS 295 (477)
T ss_pred HH--ccCHHHHHHHHHCCCCCCC
Confidence 99 5678899999988876543
No 13
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=268.02 Aligned_cols=182 Identities=29% Similarity=0.280 Sum_probs=89.3
Q ss_pred HHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHhcCCHHH
Q 002728 546 LSFAAVRGDGLLLHQLLRR-GSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD-SEGSVPLWEAMLGKHEPV 623 (887)
Q Consensus 546 l~~Aa~~g~~~~l~~Ll~~-g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d-~~G~tpL~~A~~~~~~~~ 623 (887)
+..|++.|+.+.++.|++. |.++|..|.+|.|+||+||.+++.+++++|+++|||+|..+ .-|.||||+|+++||..+
T Consensus 48 ~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~v 127 (600)
T KOG0509|consen 48 IVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISV 127 (600)
T ss_pred hhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHH
Confidence 4444555555555555544 44455555555555555555555555555555555555444 334455555555555555
Q ss_pred HHHHHHCCCCcCCCCCc--hhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCC
Q 002728 624 VRILAENGALISSSDVG--HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKP 701 (887)
Q Consensus 624 v~~Ll~~g~~~~~~~~~--~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~ 701 (887)
+.+|+++||+++..|.. +++|+|+..++..++-+|+.+|+|+|.+|.+|+||||+||.+|+...++.||+-|++++.+
T Consensus 128 v~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~ 207 (600)
T KOG0509|consen 128 VDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT 207 (600)
T ss_pred HHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc
Confidence 55555555554444322 3344455555555555555555555555555555555555555444455555555554444
Q ss_pred C-CCCCCHHHHHHhcCCHHHHHHHhcC
Q 002728 702 D-IHGWTPRALADHQGQEDIQILLQMK 727 (887)
Q Consensus 702 d-~~g~Tpl~~A~~~g~~~i~~lL~~~ 727 (887)
| .+|+||||+|+..|+..++.++++.
T Consensus 208 d~~~g~TpLHwa~~~gN~~~v~Ll~~g 234 (600)
T KOG0509|consen 208 DDNHGNTPLHWAVVGGNLTAVKLLLEG 234 (600)
T ss_pred ccccCCchHHHHHhcCCcceEehhhhc
Confidence 4 4455555555555554444433333
No 14
>PHA02946 ankyin-like protein; Provisional
Probab=99.96 E-value=8.7e-28 Score=272.23 Aligned_cols=193 Identities=23% Similarity=0.309 Sum_probs=158.9
Q ss_pred hcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCC-CCCCCCcHH
Q 002728 536 ARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH--EHCVVLLLEYGADLNI-RDSEGSVPL 612 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~gad~n~-~d~~G~tpL 612 (887)
...+.++.||||+||..|+.++++.|+++|+++|.+|.+|+||||+|+..++ .+++++|+++|+++|. .|.+|.|||
T Consensus 66 n~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL 145 (446)
T PHA02946 66 NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPL 145 (446)
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHH
Confidence 3456678889999999999999999999999999889999999998887654 7888899999999885 688889999
Q ss_pred HHHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhC--CHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcC--CHH
Q 002728 613 WEAMLGKHEPVVRILAENGALISSSD--VGHFACTAIEQN--DLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEG--NIE 686 (887)
Q Consensus 613 ~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~--~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g--~~~ 686 (887)
| |+..++.+++++|++.|++++..+ +.++++.|+..+ +.+++++|+++|+++|.+|.+|+||||+|+..| +.+
T Consensus 146 ~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~ 224 (446)
T PHA02946 146 L-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVD 224 (446)
T ss_pred H-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHH
Confidence 7 666788889999999888877655 346666666544 468889999999999999999999999999876 788
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHhcCC-HHHHHHHhcCCCC
Q 002728 687 IVKFLIDQGSDIDKPDIHGWTPRALADHQGQ-EDIQILLQMKPEP 730 (887)
Q Consensus 687 ~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~-~~i~~lL~~~~~~ 730 (887)
++++|++ |+|+|.+|..|.||||+|+..++ .+++++|..+++.
T Consensus 225 iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~ 268 (446)
T PHA02946 225 IINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV 268 (446)
T ss_pred HHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence 8888885 89999999999999999988887 4788888877654
No 15
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=269.78 Aligned_cols=195 Identities=23% Similarity=0.246 Sum_probs=182.6
Q ss_pred CCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHh
Q 002728 539 RMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLN-IRDSEGSVPLWEAML 617 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n-~~d~~G~tpL~~A~~ 617 (887)
..++.||||.|+..|+.++++.|++.|++++..+.+|.||||.|+..|+.++++.|+++|++++ ..+.+|.||||+|+.
T Consensus 32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 111 (413)
T PHA02875 32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI 111 (413)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence 4568899999999999999999999999999999999999999999999999999999998764 457789999999999
Q ss_pred cCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCC
Q 002728 618 GKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695 (887)
Q Consensus 618 ~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G 695 (887)
.|+.+++++|+++|++++..+ +.++++.|+..|+.++++.|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 112 ~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g 191 (413)
T PHA02875 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191 (413)
T ss_pred hCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 999999999999999988755 558899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC-CHHHHHHhcCCHHHHHHHhcCCCCCCC
Q 002728 696 SDIDKPDIHGW-TPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 696 adv~~~d~~g~-Tpl~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
|+++..+..|. ||+++|+..|+.+++++|.++|++...
T Consensus 192 a~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~ 230 (413)
T PHA02875 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230 (413)
T ss_pred CCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence 99999998875 889999999999999999999987653
No 16
>PHA02798 ankyrin-like protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=276.91 Aligned_cols=197 Identities=22% Similarity=0.235 Sum_probs=169.0
Q ss_pred hcCCCCcchHHHHHHHh-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCCCCCCCC
Q 002728 536 ARGRMDLPLSLSFAAVR-----GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRG---HEHCVVLLLEYGADLNIRDSE 607 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~-----g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~gad~n~~d~~ 607 (887)
...+..+.||||.|+.+ +..++++.|+++|+|+|..|.+|+||||+|+..| +.+++++|+++|||+|.+|.+
T Consensus 65 n~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~ 144 (489)
T PHA02798 65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD 144 (489)
T ss_pred CCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCC
Confidence 34456788999998764 6789999999999999999999999999999876 689999999999999999999
Q ss_pred CCcHHHHHHhcCC---HHHHHHHHHCCCCcCCCC---CchhHhHHHHh----CCHHHHHHHHHcCC--------------
Q 002728 608 GSVPLWEAMLGKH---EPVVRILAENGALISSSD---VGHFACTAIEQ----NDLLLLEKIVHYGG-------------- 663 (887)
Q Consensus 608 G~tpL~~A~~~~~---~~~v~~Ll~~g~~~~~~~---~~~~~~~a~~~----~~~~~~~~Ll~~g~-------------- 663 (887)
|.||||+|+..++ .+++++|+++|++++..+ ..++++.++.. ++.+++++|+++|+
T Consensus 145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~ 224 (489)
T PHA02798 145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224 (489)
T ss_pred CCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHH
Confidence 9999999999888 899999999999987653 23555555433 46777777777765
Q ss_pred -------------------------CCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCH
Q 002728 664 -------------------------DVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQE 718 (887)
Q Consensus 664 -------------------------~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~ 718 (887)
|+|.+|..|+||||+||..|+.+++++|+++|||++.+|..|+|||++|+..++.
T Consensus 225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~ 304 (489)
T PHA02798 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESK 304 (489)
T ss_pred HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcH
Confidence 4555677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCC
Q 002728 719 DIQILLQMKPEPKK 732 (887)
Q Consensus 719 ~i~~lL~~~~~~~~ 732 (887)
++++.|++++++..
T Consensus 305 ~iv~~lL~~~~~~~ 318 (489)
T PHA02798 305 FIFNSILNKKPNKN 318 (489)
T ss_pred HHHHHHHccCCCHH
Confidence 99999998877654
No 17
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=4.9e-28 Score=263.97 Aligned_cols=180 Identities=32% Similarity=0.425 Sum_probs=170.0
Q ss_pred hcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 002728 536 ARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWE 614 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~ 614 (887)
.+.|.++-++||+||.+|+.++++.|+++|+++|..+ .-|.||||+||++|+..+|++|+++|||++.+|.+|.+|||.
T Consensus 72 ~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHl 151 (600)
T KOG0509|consen 72 NNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHL 151 (600)
T ss_pred CCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHH
Confidence 3456689999999999999999999999999999988 778999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHCCCCcCCCCC--chhHhHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHhHHHHHcCCHHHHHHH
Q 002728 615 AMLGKHEPVVRILAENGALISSSDV--GHFACTAIEQNDLLLLEKIVHYGGDVTQLT-SNGTTPLHVAISEGNIEIVKFL 691 (887)
Q Consensus 615 A~~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~L 691 (887)
|++.||..++-+|+.+|++++..|. .+++++|+.+|+...+..|+..|++++..| .+|+||||+|+..|+..++.+|
T Consensus 152 a~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll 231 (600)
T KOG0509|consen 152 AAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLL 231 (600)
T ss_pred HHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehh
Confidence 9999999999999999999988774 478899999999888999999999999988 8999999999999999999988
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhc
Q 002728 692 IDQGSDIDKPDIHGWTPRALADHQ 715 (887)
Q Consensus 692 l~~Gadv~~~d~~g~Tpl~~A~~~ 715 (887)
++.|++.+.+|.+|.||+++|..+
T Consensus 232 ~~g~~~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 232 LEGGADLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred hhcCCcccccccCCCCHHHHHHHh
Confidence 888999999999999999999877
No 18
>PHA02946 ankyin-like protein; Provisional
Probab=99.95 E-value=9.9e-27 Score=263.61 Aligned_cols=186 Identities=25% Similarity=0.307 Sum_probs=166.1
Q ss_pred chHHHHHHH--hCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC
Q 002728 543 PLSLSFAAV--RGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620 (887)
Q Consensus 543 ~~~l~~Aa~--~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~ 620 (887)
.++||.++. .++.++++.|+++|+++|.+|.+|+||||+||..|+.++|++|+++|||+|.+|.+|.||||+|+..++
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~ 117 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 578887764 457899999999999999999999999999999999999999999999999999999999999988764
Q ss_pred --HHHHHHHHHCCCCcCC--C-CCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCC--HHHHHHHHh
Q 002728 621 --EPVVRILAENGALISS--S-DVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGN--IEIVKFLID 693 (887)
Q Consensus 621 --~~~v~~Ll~~g~~~~~--~-~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~ 693 (887)
.+++++|+++|++++. . ++.+++ +|+..++.++++.|+++|++++.+|..|+||||.|+..++ .+++++|++
T Consensus 118 ~~~e~v~lLl~~Gadin~~~d~~g~tpL-~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~ 196 (446)
T PHA02946 118 EVIERINLLVQYGAKINNSVDEEGCGPL-LACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMK 196 (446)
T ss_pred chHHHHHHHHHcCCCcccccCCCCCcHH-HHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 7899999999999984 2 233455 5778899999999999999999999999999999987554 689999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHhcC--CHHHHHHHhcCCCC
Q 002728 694 QGSDIDKPDIHGWTPRALADHQG--QEDIQILLQMKPEP 730 (887)
Q Consensus 694 ~Gadv~~~d~~g~Tpl~~A~~~g--~~~i~~lL~~~~~~ 730 (887)
+|||++.+|..|+||||+|+..| +.+++++|.. +++
T Consensus 197 ~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad 234 (446)
T PHA02946 197 LGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD 234 (446)
T ss_pred cCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC
Confidence 99999999999999999999986 7889999885 443
No 19
>PHA02795 ankyrin-like protein; Provisional
Probab=99.95 E-value=7.3e-27 Score=254.65 Aligned_cols=183 Identities=20% Similarity=0.183 Sum_probs=166.7
Q ss_pred HHHHhCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC
Q 002728 548 FAAVRGDGLLLHQLLRRGSDPN------ELDNNGRTALHIAAS--RGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 548 ~Aa~~g~~~~l~~Ll~~g~~~n------~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~ 619 (887)
+||..+..++++.|+.+|+++| ..+..++|+||+|+. .|+.++|++|+++|||+|.. ++.||||.|+..+
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~ 160 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK 160 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence 8999999999999999999999 788899999999999 99999999999999999985 4589999999999
Q ss_pred CHHHHHHHHHCCCCcCCCC--------CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHH
Q 002728 620 HEPVVRILAENGALISSSD--------VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~~~~--------~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~L 691 (887)
+.+++++|+++|++..... ..+..+.|+..++.+++++|+++|+|+|.+|..|.||||+|+..|+.+++++|
T Consensus 161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL 240 (437)
T PHA02795 161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL 240 (437)
T ss_pred cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999998533221 22445678888999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhcC--------CHHHHHHHhcCCCCCC
Q 002728 692 IDQGSDIDKPDIHGWTPRALADHQG--------QEDIQILLQMKPEPKK 732 (887)
Q Consensus 692 l~~Gadv~~~d~~g~Tpl~~A~~~g--------~~~i~~lL~~~~~~~~ 732 (887)
+++||+++.+|..|+||||+|+..| |.+++++|++++++..
T Consensus 241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~ 289 (437)
T PHA02795 241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSID 289 (437)
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999998 4699999998887543
No 20
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.6e-26 Score=264.04 Aligned_cols=186 Identities=26% Similarity=0.310 Sum_probs=168.4
Q ss_pred CCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC-------------------
Q 002728 539 RMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGA------------------- 599 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga------------------- 599 (887)
+.++.||||.|+..|+.++++.|++.|+++|..+..|.||||.|+..|+.+++++|+++|+
T Consensus 32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll 111 (434)
T PHA02874 32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL 111 (434)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999987664
Q ss_pred ----CCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCC
Q 002728 600 ----DLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGT 673 (887)
Q Consensus 600 ----d~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~ 673 (887)
|+|.+|..|.||||+|+..|+.+++++|+++|++++..+ +.++++.|+..++.++++.|+++|++++..|..|+
T Consensus 112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~ 191 (434)
T PHA02874 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE 191 (434)
T ss_pred HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence 567788999999999999999999999999999987655 45788999999999999999999999999999999
Q ss_pred cHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHh
Q 002728 674 TPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725 (887)
Q Consensus 674 TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~ 725 (887)
||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. ++++|.
T Consensus 192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~-~i~~Ll 242 (434)
T PHA02874 192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLI 242 (434)
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH-HHHHHH
Confidence 999999999999999999999999999999999999999987764 445554
No 21
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.7e-26 Score=268.45 Aligned_cols=195 Identities=23% Similarity=0.327 Sum_probs=180.8
Q ss_pred CCCCcchHHHH-----HHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCCCc
Q 002728 538 GRMDLPLSLSF-----AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAA--SRGHEHCVVLLLEYGADLNIRDSEGSV 610 (887)
Q Consensus 538 ~~~~~~~~l~~-----Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gad~n~~d~~G~t 610 (887)
.+.++.||||. |+..|+.++++.|+++|+++|..|..|.||||+|+ ..|+.+++++|+++|++++..|..|.|
T Consensus 64 ~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t 143 (480)
T PHA03100 64 STKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGEN 143 (480)
T ss_pred ccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCc
Confidence 34567799999 99999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhcC--CHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCC------CcHhHHHH
Q 002728 611 PLWEAMLGK--HEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNG------TTPLHVAI 680 (887)
Q Consensus 611 pL~~A~~~~--~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g------~TpLh~Aa 680 (887)
|||.|+..| +.+++++|+++|++++..+ +.++++.|+..|+.+++++|+++|++++..+..| .||||.|+
T Consensus 144 ~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~ 223 (480)
T PHA03100 144 LLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAA 223 (480)
T ss_pred HHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHH
Confidence 999999999 9999999999999887654 4578899999999999999999999999999888 89999999
Q ss_pred HcCC--HHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 681 SEGN--IEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 681 ~~g~--~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
..|+ .+++++|+++|++++.+|..|.||||+|+..|+.+++++|.+++++..
T Consensus 224 ~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n 277 (480)
T PHA03100 224 CYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPN 277 (480)
T ss_pred HhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 9999 999999999999999999999999999999999999999999988543
No 22
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.3e-26 Score=262.78 Aligned_cols=190 Identities=26% Similarity=0.323 Sum_probs=173.4
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHh
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAML 617 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~ 617 (887)
.+..+.||||.|+..|+.++++.|+++|+++|..|.+|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~ 199 (434)
T PHA02874 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE 199 (434)
T ss_pred CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcC-CHHHHHHHHhC
Q 002728 618 GKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEG-NIEIVKFLIDQ 694 (887)
Q Consensus 618 ~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g-~~~~v~~Ll~~ 694 (887)
.|+.+++++|+++|++++..+ +.++++.|+..+. +.++.|+ .|+++|.+|.+|+||||+|+..+ +.+++++|+++
T Consensus 200 ~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~ 277 (434)
T PHA02874 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYH 277 (434)
T ss_pred cCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHC
Confidence 999999999999999877654 5577888888765 5666665 69999999999999999999876 79999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHhcC-CHHHHHHHhcCCC
Q 002728 695 GSDIDKPDIHGWTPRALADHQG-QEDIQILLQMKPE 729 (887)
Q Consensus 695 Gadv~~~d~~g~Tpl~~A~~~g-~~~i~~lL~~~~~ 729 (887)
|||++.+|..|.||+++|+..+ +.++++.|.....
T Consensus 278 gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~ 313 (434)
T PHA02874 278 KADISIKDNKGENPIDTAFKYINKDPVIKDIIANAV 313 (434)
T ss_pred cCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcC
Confidence 9999999999999999999987 6778888877654
No 23
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.95 E-value=2.2e-26 Score=267.70 Aligned_cols=190 Identities=22% Similarity=0.228 Sum_probs=130.2
Q ss_pred CCCcchHHHHHHHh--CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 002728 539 RMDLPLSLSFAAVR--GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH--EHCVVLLLEYGADLNIRDSEGSVPLWE 614 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~--g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~gad~n~~d~~G~tpL~~ 614 (887)
+..+.||||.|+.. ++.++++.|+++|+++|..|.+|+||||+|+..|+ .++|++|+++|||+|.+|..|.||||.
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~ 253 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT 253 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 45688999988654 68899999999999999999999999999999995 589999999999999999999999997
Q ss_pred HH-------------------------------------hcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHH--hCCHH
Q 002728 615 AM-------------------------------------LGKHEPVVRILAENGALISSSD--VGHFACTAIE--QNDLL 653 (887)
Q Consensus 615 A~-------------------------------------~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~--~~~~~ 653 (887)
|+ ..|+.+++++|+++|++++..+ +.++++.|+. .++.+
T Consensus 254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~e 333 (764)
T PHA02716 254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTD 333 (764)
T ss_pred HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCch
Confidence 64 2344555555555555555433 2244444432 23455
Q ss_pred HHHHHHHcCCCCccCCCCCCcHhHHHHH--------------cCCHHHHHHHHhCCCCCCCCCCCCCCHHHH----HHhc
Q 002728 654 LLEKIVHYGGDVTQLTSNGTTPLHVAIS--------------EGNIEIVKFLIDQGSDIDKPDIHGWTPRAL----ADHQ 715 (887)
Q Consensus 654 ~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~--------------~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~----A~~~ 715 (887)
++++|+++|+++|.+|..|+||||+|+. .|+.+++++|+++|||++.+|..|+||||. |...
T Consensus 334 IVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~ 413 (764)
T PHA02716 334 IIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNY 413 (764)
T ss_pred HHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhc
Confidence 5666666666666555556666665543 245556666666666666666556666652 2223
Q ss_pred CCHHHHHHHhcCC
Q 002728 716 GQEDIQILLQMKP 728 (887)
Q Consensus 716 g~~~i~~lL~~~~ 728 (887)
++.+++++|.+.+
T Consensus 414 ~~~dIvklLis~~ 426 (764)
T PHA02716 414 MYYDIIDCLISDK 426 (764)
T ss_pred ChHHHHHHHHhCc
Confidence 4555555555543
No 24
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.4e-26 Score=234.03 Aligned_cols=173 Identities=15% Similarity=0.213 Sum_probs=154.7
Q ss_pred CcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHh
Q 002728 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRG--HEHCVVLLLEYGADLNIRD-SEGSVPLWEAML 617 (887)
Q Consensus 541 ~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~gad~n~~d-~~G~tpL~~A~~ 617 (887)
...+|||.|+..|+.+.++.|++. +|..|..|.||||+|+..+ +.+++++|+++|+|+|.++ ..|.||||+|+.
T Consensus 20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~ 96 (209)
T PHA02859 20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS 96 (209)
T ss_pred ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence 357899999999999999999975 5677899999999999855 8999999999999999997 489999999876
Q ss_pred c---CCHHHHHHHHHCCCCcCCCCC--chhHhHHHH--hCCHHHHHHHHHcCCCCccCCCCCCcHhHH-HHHcCCHHHHH
Q 002728 618 G---KHEPVVRILAENGALISSSDV--GHFACTAIE--QNDLLLLEKIVHYGGDVTQLTSNGTTPLHV-AISEGNIEIVK 689 (887)
Q Consensus 618 ~---~~~~~v~~Ll~~g~~~~~~~~--~~~~~~a~~--~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~-Aa~~g~~~~v~ 689 (887)
. ++.+++++|+++|++++..+. .++++.|+. .++.+++++|+++|++++.+|.+|.||||. |+..|+.++++
T Consensus 97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~ 176 (209)
T PHA02859 97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFD 176 (209)
T ss_pred hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHH
Confidence 3 479999999999999988764 467777765 468999999999999999999999999996 56788999999
Q ss_pred HHHhCCCCCCCCCCCCCCHHHHHHhcC
Q 002728 690 FLIDQGSDIDKPDIHGWTPRALADHQG 716 (887)
Q Consensus 690 ~Ll~~Gadv~~~d~~g~Tpl~~A~~~g 716 (887)
+|+++|+|++.+|..|+||+++|..++
T Consensus 177 ~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 177 FLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 999999999999999999999998664
No 25
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.94 E-value=1.6e-26 Score=268.77 Aligned_cols=184 Identities=24% Similarity=0.216 Sum_probs=148.1
Q ss_pred HHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHh----------
Q 002728 550 AVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAAS--RGHEHCVVLLLEYGADLNIRDSEGSVPLWEAML---------- 617 (887)
Q Consensus 550 a~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~---------- 617 (887)
|..|+.++++.|+++|+++|..|.+|+||||+|+. .++.+++++|+++|+|+|.+|..|+||||+|+.
T Consensus 292 A~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~ 371 (764)
T PHA02716 292 ARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDP 371 (764)
T ss_pred HHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccc
Confidence 44578888999999999999999999999998764 457899999999999999999999999998865
Q ss_pred ----cCCHHHHHHHHHCCCCcCCCCC--chhHh----HHHHhCCHHHHHHHHHcCC------------------------
Q 002728 618 ----GKHEPVVRILAENGALISSSDV--GHFAC----TAIEQNDLLLLEKIVHYGG------------------------ 663 (887)
Q Consensus 618 ----~~~~~~v~~Ll~~g~~~~~~~~--~~~~~----~a~~~~~~~~~~~Ll~~g~------------------------ 663 (887)
.++.+++++|+++|++++..+. .++++ .|...++.+++++|++.|+
T Consensus 372 ~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lh 451 (764)
T PHA02716 372 ETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIH 451 (764)
T ss_pred cccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHH
Confidence 3678999999999998887653 35554 2333456777777766542
Q ss_pred -------------------------------------CCccCCCCCCcHhHHHHHcCCHH-----HHHHHHhCCCCCCCC
Q 002728 664 -------------------------------------DVTQLTSNGTTPLHVAISEGNIE-----IVKFLIDQGSDIDKP 701 (887)
Q Consensus 664 -------------------------------------~~~~~d~~g~TpLh~Aa~~g~~~-----~v~~Ll~~Gadv~~~ 701 (887)
++|..|..|+||||+|+..|+.+ ++++|+++|||+|.+
T Consensus 452 h~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~ 531 (764)
T PHA02716 452 HIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIP 531 (764)
T ss_pred HHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCccc
Confidence 33555778999999999998874 459999999999999
Q ss_pred CCCCCCHHHHHHhcCCH-----HHHHHHhcCCCCCCC
Q 002728 702 DIHGWTPRALADHQGQE-----DIQILLQMKPEPKKA 733 (887)
Q Consensus 702 d~~g~Tpl~~A~~~g~~-----~i~~lL~~~~~~~~~ 733 (887)
|..|+||||+|++.|+. +++++|+++++....
T Consensus 532 d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~ 568 (764)
T PHA02716 532 TKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDI 568 (764)
T ss_pred CCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcch
Confidence 99999999999999976 899999988876543
No 26
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.94 E-value=3.4e-26 Score=265.33 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=169.0
Q ss_pred cCCCCcchHHHHHHHh---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCCCC-CCCCCC
Q 002728 537 RGRMDLPLSLSFAAVR---GDGLLLHQLLRRGSDP-NELDNNGRTALHIAASR--GHEHCVVLLLEYGADLNI-RDSEGS 609 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~---g~~~~l~~Ll~~g~~~-n~~d~~G~TpLh~Aa~~--g~~~~v~~Ll~~gad~n~-~d~~G~ 609 (887)
..+.++.||||.|+.. |+.++++.|+++|+|+ +..|..|+||||+|+.. ++.++|++|+++|+|++. .+..|.
T Consensus 103 ~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~ 182 (494)
T PHA02989 103 LKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGL 182 (494)
T ss_pred CCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCC
Confidence 3456788999988765 6899999999999999 78999999999998764 689999999999999998 688999
Q ss_pred cHHHHHHhcC----CHHHHHHHHHCCCCcCCCCCc--hhHhHHHH------hCCHHHHHHHHHcCCCCccCCCCCCcHhH
Q 002728 610 VPLWEAMLGK----HEPVVRILAENGALISSSDVG--HFACTAIE------QNDLLLLEKIVHYGGDVTQLTSNGTTPLH 677 (887)
Q Consensus 610 tpL~~A~~~~----~~~~v~~Ll~~g~~~~~~~~~--~~~~~a~~------~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh 677 (887)
||||.|+..+ +.+++++|+++|++++..+.+ ++++.++. .+..+++++|+. |+++|.+|..|+||||
T Consensus 183 tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~ 261 (494)
T PHA02989 183 TPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLL 261 (494)
T ss_pred ChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHH
Confidence 9999998764 899999999999999887743 44444433 345677887655 7999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCC
Q 002728 678 VAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 678 ~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~ 730 (887)
+|+..|+.+++++|+++|||++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus 262 ~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~ 314 (494)
T PHA02989 262 ISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314 (494)
T ss_pred HHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999876543
No 27
>PHA03095 ankyrin-like protein; Provisional
Probab=99.94 E-value=4.4e-26 Score=264.32 Aligned_cols=195 Identities=22% Similarity=0.235 Sum_probs=150.6
Q ss_pred CCCCcchHHHHHHHhC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Q 002728 538 GRMDLPLSLSFAAVRG-DGLLLHQLLRRGSDPNELDNNGRTALHIAA--SRGHEHCVVLLLEYGADLNIRDSEGSVPLWE 614 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g-~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~ 614 (887)
.+..+.||||.|+..| +.++++.|+++|+++|..|..|+||||+|+ ..++.+++++|+++|+|+|.+|..|.||||.
T Consensus 79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~ 158 (471)
T PHA03095 79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158 (471)
T ss_pred CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 3446778888888888 488888888888888888888888888888 4557788888888888888888888888888
Q ss_pred HHhcC--CHHHHHHHHHCCCCcCCCC--CchhHhHHHHh--CCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCH--H
Q 002728 615 AMLGK--HEPVVRILAENGALISSSD--VGHFACTAIEQ--NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNI--E 686 (887)
Q Consensus 615 A~~~~--~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~--~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~--~ 686 (887)
|+..+ +.+++++|+++|++++..+ +.++++.|+.. ++.++++.|+++|++++.+|..|+||||+||..|+. .
T Consensus 159 a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~ 238 (471)
T PHA03095 159 LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRS 238 (471)
T ss_pred HHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHH
Confidence 77765 5678888888887766554 33556665543 667888888888888888888888888888887764 5
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 687 IVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 687 ~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
+++.|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus 239 ~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n 284 (471)
T PHA03095 239 LVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284 (471)
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 7778888888888888888888888888888888888888777653
No 28
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.94 E-value=4.9e-26 Score=263.17 Aligned_cols=169 Identities=31% Similarity=0.391 Sum_probs=154.2
Q ss_pred HHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcC
Q 002728 557 LLHQLLRRGSDPNELDNN-GRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALIS 635 (887)
Q Consensus 557 ~l~~Ll~~g~~~n~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~ 635 (887)
+++.|+++|+++|..|.+ |+||||+||..|+.+++++|+++|+++|.+|..|.||||.|+..|+.+++++|+++|++++
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in 228 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD 228 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 677778889999999988 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CchhHhHHHHh-CCHHHHHHHHHcCCCCccCCC-CCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002728 636 SSD--VGHFACTAIEQ-NDLLLLEKIVHYGGDVTQLTS-NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRAL 711 (887)
Q Consensus 636 ~~~--~~~~~~~a~~~-~~~~~~~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~ 711 (887)
..+ +.++++.|+.. ++.++++.|+++|+++|.++. .|+||||.| .++.+++++|+++|||+|.+|..|.||+++
T Consensus 229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~ 306 (477)
T PHA02878 229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSS 306 (477)
T ss_pred CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence 765 44788888875 789999999999999999886 899999999 578999999999999999999999999999
Q ss_pred HHhcC-CHHHHHHHhcC
Q 002728 712 ADHQG-QEDIQILLQMK 727 (887)
Q Consensus 712 A~~~g-~~~i~~lL~~~ 727 (887)
|+..+ +.++.++|..+
T Consensus 307 A~~~~~~~~~~~~li~~ 323 (477)
T PHA02878 307 AVKQYLCINIGRILISN 323 (477)
T ss_pred HHHHcCccchHHHHHHH
Confidence 99764 45677777644
No 29
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=241.82 Aligned_cols=190 Identities=29% Similarity=0.361 Sum_probs=173.8
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHH-cCCCCCCC--------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLR-RGSDPNEL--------DNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~-~g~~~n~~--------d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G 608 (887)
...++.|||..||.+|+.+++++|++ .++++... ..+|-+||..|+..||.++|+.|+.+||++|......
T Consensus 38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN 117 (615)
T KOG0508|consen 38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN 117 (615)
T ss_pred cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence 35678899999999999999999999 47776543 2468899999999999999999999999999999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCc--hhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHH
Q 002728 609 SVPLWEAMLGKHEPVVRILAENGALISSSDVG--HFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIE 686 (887)
Q Consensus 609 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~ 686 (887)
.|||-.||.-||.+++++|+++|++++..+.. +.++.|+.+|+.+++++|++.|+|+|.++..|+||||.|+..|+++
T Consensus 118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd 197 (615)
T KOG0508|consen 118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD 197 (615)
T ss_pred CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence 99999999999999999999999999887754 5667899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCC
Q 002728 687 IVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKP 728 (887)
Q Consensus 687 ~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~ 728 (887)
++++|+.+|+.++ +|.+|.|||-.|...|+.+++++|....
T Consensus 198 ivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~~~ 238 (615)
T KOG0508|consen 198 IVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQCE 238 (615)
T ss_pred HHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhcCC
Confidence 9999999999885 4677999999999999999999998643
No 30
>PHA03095 ankyrin-like protein; Provisional
Probab=99.94 E-value=7.1e-26 Score=262.61 Aligned_cols=195 Identities=22% Similarity=0.199 Sum_probs=179.6
Q ss_pred cCCCCcchHHHHHH--HhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCcHH
Q 002728 537 RGRMDLPLSLSFAA--VRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRG--HEHCVVLLLEYGADLNIRDSEGSVPL 612 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa--~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~gad~n~~d~~G~tpL 612 (887)
..+..+.||||.|+ ..++.++++.|+++|+++|..|..|+||||+|+..+ +.+++++|+++|++++..|..|.|||
T Consensus 112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~L 191 (471)
T PHA03095 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLL 191 (471)
T ss_pred CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 34567889999999 567899999999999999999999999999998866 68999999999999999999999999
Q ss_pred HHHHhc--CCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCH--HHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHH
Q 002728 613 WEAMLG--KHEPVVRILAENGALISSSD--VGHFACTAIEQNDL--LLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIE 686 (887)
Q Consensus 613 ~~A~~~--~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~--~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~ 686 (887)
|.|+.. ++.++++.|++.|++++..+ +.+++|.|+..++. .+++.|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 192 h~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~ 271 (471)
T PHA03095 192 HHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPR 271 (471)
T ss_pred HHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 999875 77899999999999988766 45788999998875 6888999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCC
Q 002728 687 IVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPK 731 (887)
Q Consensus 687 ~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~ 731 (887)
++++|+++|||++.+|..|+||+++|+..|+.+++++|+++++..
T Consensus 272 ~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~ 316 (471)
T PHA03095 272 ACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA 316 (471)
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999877654
No 31
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.93 E-value=7.3e-25 Score=264.56 Aligned_cols=196 Identities=27% Similarity=0.304 Sum_probs=165.1
Q ss_pred CCCCcchHHHHHHHhCCH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 002728 538 GRMDLPLSLSFAAVRGDG-LLLHQLLRRGSDPNELDNNGRTALHIAASRG-HEHCVVLLLEYGADLNIRDSEGSVPLWEA 615 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~-~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~gad~n~~d~~G~tpL~~A 615 (887)
.+..+.||||+|+..|+. ++++.|++.|+++|..|.+|+||||+|+..| ..++++.|+..|+++|.+|..|.||||+|
T Consensus 269 ~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A 348 (682)
T PHA02876 269 IDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQA 348 (682)
T ss_pred CCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHH
Confidence 345678899999988886 5888888889999888889999999999888 58888999999999999999999999998
Q ss_pred Hhc-CCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCC-HHHHHHH
Q 002728 616 MLG-KHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGN-IEIVKFL 691 (887)
Q Consensus 616 ~~~-~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~-~~~v~~L 691 (887)
+.. ++.+++++|++.|++++..+ +.++++.|+..|+.++++.|+++|++++..+..|.||||+|+..++ ..++++|
T Consensus 349 ~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~L 428 (682)
T PHA02876 349 STLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTL 428 (682)
T ss_pred HHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHH
Confidence 874 56788888889988887765 4478888888999999999999999998888888899999887666 4678888
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhcC-CHHHHHHHhcCCCCCCC
Q 002728 692 IDQGSDIDKPDIHGWTPRALADHQG-QEDIQILLQMKPEPKKA 733 (887)
Q Consensus 692 l~~Gadv~~~d~~g~Tpl~~A~~~g-~~~i~~lL~~~~~~~~~ 733 (887)
+++|+++|.+|..|+||||+|+..| +.+++++|.++|++...
T Consensus 429 l~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~ 471 (682)
T PHA02876 429 IDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA 471 (682)
T ss_pred HhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCC
Confidence 8999999999999999999998876 67888999888876543
No 32
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=99.92 E-value=9.5e-26 Score=178.18 Aligned_cols=66 Identities=61% Similarity=1.030 Sum_probs=62.6
Q ss_pred CCeEEEE---cCCCCcccceEEEccccHHHHHHHHhhhcCCCccceecCCCceeeeeeeeecCCeEEEE
Q 002728 815 PPRVTIS---CPEKGQVSGKLVLLPKSLQELLSIASTKFGFTPSKILSKEGAEIDDVGLIRDDDHLFIV 880 (887)
Q Consensus 815 ~~rvti~---~p~~~~~~gkli~lp~s~~el~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~d~~~l~~~ 880 (887)
|+||||+ ||.++...||+++||+|++||+++|++|||+++++|+|+||||||||+|||||||||++
T Consensus 1 ~~RVtI~~~~~~~~~~~~GKvi~lP~SleeLl~ia~~kfg~~~~~v~~~dgaeIdDI~~IRDgD~L~~~ 69 (69)
T PF11834_consen 1 PKRVTIFPNHPPEKGRRAGKVIWLPDSLEELLKIASEKFGFSATKVLNEDGAEIDDIDVIRDGDHLYLV 69 (69)
T ss_pred CcEEEEecCCCCcccCcCCEEEEcCccHHHHHHHHHHHhCCCceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence 6899999 77767788999999999999999999999999999999999999999999999999986
No 33
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=260.92 Aligned_cols=197 Identities=21% Similarity=0.213 Sum_probs=172.8
Q ss_pred hcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH---------------------
Q 002728 536 ARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLL--------------------- 594 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~L--------------------- 594 (887)
...+.++.||||.||..|+.++++.|+++|+++|..+.+|.||||+|+..|+.++++.|
T Consensus 172 n~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~ 251 (682)
T PHA02876 172 NAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNE 251 (682)
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcC
Confidence 34566789999999999999999999999999999999999999999998887776654
Q ss_pred --------HhCCCCCCCCCCCCCcHHHHHHhcCCH-HHHHHHHHCCCCcCCCC--CchhHhHHHHhC-CHHHHHHHHHcC
Q 002728 595 --------LEYGADLNIRDSEGSVPLWEAMLGKHE-PVVRILAENGALISSSD--VGHFACTAIEQN-DLLLLEKIVHYG 662 (887)
Q Consensus 595 --------l~~gad~n~~d~~G~tpL~~A~~~~~~-~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~-~~~~~~~Ll~~g 662 (887)
++.|+++|..|..|.||||+|+..++. +++++|++.|++++..+ +.++++.|+..| +.++++.|+..|
T Consensus 252 ~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g 331 (682)
T PHA02876 252 DLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG 331 (682)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC
Confidence 456677888888999999999999986 58999999999887654 457888899888 689999999999
Q ss_pred CCCccCCCCCCcHhHHHHHc-CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 663 GDVTQLTSNGTTPLHVAISE-GNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 663 ~~~~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
++++..|..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.++++...
T Consensus 332 adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~ 402 (682)
T PHA02876 332 ADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE 402 (682)
T ss_pred CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence 99999999999999999885 57889999999999999999999999999999999999999998887654
No 34
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.92 E-value=7.4e-25 Score=242.74 Aligned_cols=198 Identities=24% Similarity=0.353 Sum_probs=162.1
Q ss_pred hhcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh-----CCCCCCCCCCCCC
Q 002728 535 LARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLE-----YGADLNIRDSEGS 609 (887)
Q Consensus 535 la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-----~gad~n~~d~~G~ 609 (887)
+...+..+.||||.||..|+.+..+.|++.|++|-+.|.+|++|+|.|+..|..+|.+..+. .++++|.-|.+|.
T Consensus 147 vnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~ 226 (929)
T KOG0510|consen 147 VNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKA 226 (929)
T ss_pred ccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCC
Confidence 33455567788888888888887788888888888888888888888888888888888887 5677888888888
Q ss_pred cHHHHHHhcCCHHHHHHHHHCCCCcCC-----------------CCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCC
Q 002728 610 VPLWEAMLGKHEPVVRILAENGALISS-----------------SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNG 672 (887)
Q Consensus 610 tpL~~A~~~~~~~~v~~Ll~~g~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g 672 (887)
||||.|+.+|+.++++.++++|+.... .++.+++|.|+++|..+.++.|+..|+++|.++.++
T Consensus 227 ~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~ 306 (929)
T KOG0510|consen 227 TPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDE 306 (929)
T ss_pred cchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCC
Confidence 888888888888888888888764332 234578888888888888888888888888888888
Q ss_pred CcHhHHHHHcCCHHHHHHHHh-CC-CCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 673 TTPLHVAISEGNIEIVKFLID-QG-SDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 673 ~TpLh~Aa~~g~~~~v~~Ll~-~G-adv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
.||||.||..|+.++|+-||+ .| ...|..|-.|.||||+|+..||..++++|+++|+...
T Consensus 307 ~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 307 ESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL 368 (929)
T ss_pred CCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence 888888888888888888888 44 3567788888888888888888888888888887654
No 35
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-25 Score=231.92 Aligned_cols=185 Identities=30% Similarity=0.374 Sum_probs=164.2
Q ss_pred HHHHhCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHHHHHcCCHHHHHHHHh-CCCCCCCC--------CCCCCcHHH
Q 002728 548 FAAVRGDGLLLHQLLRRGSDP-----NELDNNGRTALHIAASRGHEHCVVLLLE-YGADLNIR--------DSEGSVPLW 613 (887)
Q Consensus 548 ~Aa~~g~~~~l~~Ll~~g~~~-----n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~gad~n~~--------d~~G~tpL~ 613 (887)
-|+..|+...+..|+-...+. -..+.+|.|||-+||++||.++|++|++ +++++... .-+|-+|||
T Consensus 10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW 89 (615)
T KOG0508|consen 10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW 89 (615)
T ss_pred HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence 677788888887777553321 1235789999999999999999999999 58877553 346889999
Q ss_pred HHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHH
Q 002728 614 EAMLGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691 (887)
Q Consensus 614 ~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~L 691 (887)
.|+..||.++|++|+++|+++|... ..+++..||..|+.+++++|+++|+|++..|++|.|.||+||..||.+++++|
T Consensus 90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL 169 (615)
T KOG0508|consen 90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL 169 (615)
T ss_pred HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence 9999999999999999999988754 45788999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCC
Q 002728 692 IDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 692 l~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
++.|||+|.++..|+|+||.|++.|+.+++++|+++++...
T Consensus 170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~ 210 (615)
T KOG0508|consen 170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID 210 (615)
T ss_pred HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee
Confidence 99999999999999999999999999999999999987643
No 36
>PHA02798 ankyrin-like protein; Provisional
Probab=99.92 E-value=3.1e-24 Score=248.68 Aligned_cols=186 Identities=21% Similarity=0.267 Sum_probs=164.8
Q ss_pred HHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC---
Q 002728 548 FAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASR-----GHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK--- 619 (887)
Q Consensus 548 ~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~--- 619 (887)
.+...++.++++.|+++|+++|..|..|.||||.|+.+ ++.+++++|+++|||+|.+|.+|.||||+|+.++
T Consensus 44 l~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~ 123 (489)
T PHA02798 44 LQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYIN 123 (489)
T ss_pred HhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcC
Confidence 34445689999999999999999999999999999864 7799999999999999999999999999999976
Q ss_pred CHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCC---HHHHHHHHHcCCCCccCC-CCCCcHhHHHHHc----CCHHHHH
Q 002728 620 HEPVVRILAENGALISSSD--VGHFACTAIEQND---LLLLEKIVHYGGDVTQLT-SNGTTPLHVAISE----GNIEIVK 689 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~---~~~~~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~----g~~~~v~ 689 (887)
+.+++++|+++|++++..+ +.++++.|+..++ .+++++|+++|+|+|.++ ..|.||||.|+.. ++.++++
T Consensus 124 ~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk 203 (489)
T PHA02798 124 NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILK 203 (489)
T ss_pred hHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence 7899999999999998765 4578889999887 999999999999999885 5799999998764 4789999
Q ss_pred HHHhCCCCC---------------------------------------CCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCC
Q 002728 690 FLIDQGSDI---------------------------------------DKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 690 ~Ll~~Gadv---------------------------------------~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~ 730 (887)
+|+++|+++ |.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd 283 (489)
T PHA02798 204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD 283 (489)
T ss_pred HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc
Confidence 999888654 45677899999999999999999999999987
Q ss_pred CCC
Q 002728 731 KKA 733 (887)
Q Consensus 731 ~~~ 733 (887)
...
T Consensus 284 in~ 286 (489)
T PHA02798 284 INI 286 (489)
T ss_pred ccc
Confidence 643
No 37
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.92 E-value=5.3e-24 Score=247.02 Aligned_cols=192 Identities=14% Similarity=0.175 Sum_probs=162.9
Q ss_pred CcchHHHHHHHhC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCC-CCCCCCCCc
Q 002728 541 DLPLSLSFAAVRG------DGLLLHQLLRRGSDPNELDNNGRTALHIAASR---GHEHCVVLLLEYGADL-NIRDSEGSV 610 (887)
Q Consensus 541 ~~~~~l~~Aa~~g------~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~gad~-n~~d~~G~t 610 (887)
.+.||||.|+..+ ..++++.|+++|+|+|.+|.+|+||||.|+.. |+.+++++|+++|||+ +.+|..|+|
T Consensus 68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t 147 (494)
T PHA02989 68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN 147 (494)
T ss_pred CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence 3578999887754 46899999999999999999999999988765 6789999999999999 789999999
Q ss_pred HHHHHHhc--CCHHHHHHHHHCCCCcCC-CC--CchhHhHHHHh----CCHHHHHHHHHcCCCCccCCCCCCcHhHHHHH
Q 002728 611 PLWEAMLG--KHEPVVRILAENGALISS-SD--VGHFACTAIEQ----NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAIS 681 (887)
Q Consensus 611 pL~~A~~~--~~~~~v~~Ll~~g~~~~~-~~--~~~~~~~a~~~----~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~ 681 (887)
|||+|+.. ++.+++++|+++|++++. .+ +.++++.|+.. ++.+++++|+++|+++|.+|..|.||||.|+.
T Consensus 148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~ 227 (494)
T PHA02989 148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD 227 (494)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH
Confidence 99998764 588999999999999876 22 44666666544 58999999999999999999999999998765
Q ss_pred c------CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCCC
Q 002728 682 E------GNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 682 ~------g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
. +..+++++|+ .|||+|.+|..|+||||+|+..|+.+++++|+++|++...
T Consensus 228 ~~~~~~~~~~~il~~l~-~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~ 284 (494)
T PHA02989 228 NNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYN 284 (494)
T ss_pred hchhhcccchHHHHHHH-hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccc
Confidence 4 3567788765 4799999999999999999999999999999999987643
No 38
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=239.66 Aligned_cols=198 Identities=23% Similarity=0.248 Sum_probs=180.2
Q ss_pred HhhcCCCCcchHHHHHHHhCCHHHHHHHHH-----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--------
Q 002728 534 KLARGRMDLPLSLSFAAVRGDGLLLHQLLR-----RGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD-------- 600 (887)
Q Consensus 534 ~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~-----~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad-------- 600 (887)
...+.+.++.+++|.|+.+|..+.++..+. ++..+|.-|+.|.||||.|+..|+.++++.+|+.|+.
T Consensus 179 ~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~ 258 (929)
T KOG0510|consen 179 DPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDA 258 (929)
T ss_pred CCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHH
Confidence 444677889999999999999999999998 7888999999999999999999999999999998743
Q ss_pred -------CCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHH-cC-CCCccCC
Q 002728 601 -------LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVH-YG-GDVTQLT 669 (887)
Q Consensus 601 -------~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~-~g-~~~~~~d 669 (887)
+|..|++|.||||+||+.|+.+++..|+..|++++..+ ..+++|.|+..|+.+.++.|++ .| ...|..|
T Consensus 259 ~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D 338 (929)
T KOG0510|consen 259 MQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESD 338 (929)
T ss_pred HHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccc
Confidence 25578999999999999999999999999999988754 5689999999999999999998 54 3578888
Q ss_pred CCCCcHhHHHHHcCCHHHHHHHHhCCCCCC---CCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCC
Q 002728 670 SNGTTPLHVAISEGNIEIVKFLIDQGSDID---KPDIHGWTPRALADHQGQEDIQILLQMKPEPK 731 (887)
Q Consensus 670 ~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~---~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~ 731 (887)
..|+||||.|+.+||..++++||+.||+.+ ..|.+|+||||.|+..|+..++++|..+|++.
T Consensus 339 ~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I 403 (929)
T KOG0510|consen 339 LHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI 403 (929)
T ss_pred ccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence 999999999999999999999999999887 56999999999999999999999999999986
No 39
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=2.9e-22 Score=245.02 Aligned_cols=176 Identities=23% Similarity=0.223 Sum_probs=156.1
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCC
Q 002728 554 DGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGAL 633 (887)
Q Consensus 554 ~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~ 633 (887)
+.++-..+.+.+.. ..+.++.++||.||..|+.++++.|+++|+|+|.+|.+|+||||.|+..|+.+++++|+++|++
T Consensus 506 ~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad 583 (823)
T PLN03192 506 DLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN 583 (823)
T ss_pred cccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC
Confidence 34444444444443 3456778999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 002728 634 ISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRAL 711 (887)
Q Consensus 634 ~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~ 711 (887)
++..+ +.++++.|+..|+.++++.|++.++..+. ..|.||||.||..|+.++++.|+++|+|+|.+|..|+||||+
T Consensus 584 in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~ 661 (823)
T PLN03192 584 VHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQV 661 (823)
T ss_pred CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 88765 55789999999999999999998877653 467899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHhcCCCCCCC
Q 002728 712 ADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 712 A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
|+..|+.+++++|.+++++...
T Consensus 662 A~~~g~~~iv~~Ll~~GAdv~~ 683 (823)
T PLN03192 662 AMAEDHVDMVRLLIMNGADVDK 683 (823)
T ss_pred HHHCCcHHHHHHHHHcCCCCCC
Confidence 9999999999999999987543
No 40
>PHA02917 ankyrin-like protein; Provisional
Probab=99.92 E-value=6.6e-24 Score=249.41 Aligned_cols=190 Identities=19% Similarity=0.115 Sum_probs=162.0
Q ss_pred cCCCCcchHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCCCCCCCC
Q 002728 537 RGRMDLPLSLSFAAVR---GDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHE----HCVVLLLEYGADLNIRDSEGS 609 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~---g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~----~~v~~Ll~~gad~n~~d~~G~ 609 (887)
..+.++.||||.||.. |+.++++.||+.|++++..|..|+||||+|+..|+. ++++.|++++..+|..| ..
T Consensus 27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~ 104 (661)
T PHA02917 27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FN 104 (661)
T ss_pred ccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cc
Confidence 3466789999997555 889999999999999999999999999999999995 46678888765455544 34
Q ss_pred cHHHHHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHH--HHhCCHHHHHHHHHcCCCCccCCC---CC----------
Q 002728 610 VPLWEAMLGKHEPVVRILAENGALISSSD--VGHFACTA--IEQNDLLLLEKIVHYGGDVTQLTS---NG---------- 672 (887)
Q Consensus 610 tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a--~~~~~~~~~~~Ll~~g~~~~~~d~---~g---------- 672 (887)
+++|.|+.+++.+++++|+++|++++..+ +.++++.| +..++.+++++|+++|+++|.+|. .|
T Consensus 105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~ 184 (661)
T PHA02917 105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN 184 (661)
T ss_pred hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence 78889999999999999999999999866 34666643 457899999999999999987653 34
Q ss_pred -CcHhHHHHH-----------cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCH--HHHHHHhcCCC
Q 002728 673 -TTPLHVAIS-----------EGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQE--DIQILLQMKPE 729 (887)
Q Consensus 673 -~TpLh~Aa~-----------~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~--~i~~lL~~~~~ 729 (887)
.||||+|+. .|+.++|++|+++|||+|.+|..|+||||+|+..|+. +++++|.+ ++
T Consensus 185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~ 254 (661)
T PHA02917 185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI 254 (661)
T ss_pred cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence 599999986 5689999999999999999999999999999999985 79999975 54
No 41
>PHA02730 ankyrin-like protein; Provisional
Probab=99.91 E-value=1e-23 Score=240.75 Aligned_cols=190 Identities=18% Similarity=0.085 Sum_probs=162.9
Q ss_pred cCCCCcchHHHHHHHhC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhCCC--CCCCCCCCCC
Q 002728 537 RGRMDLPLSLSFAAVRG---DGLLLHQLLRRGSDPNELDNNGRTALHIAASRG--HEHCVVLLLEYGA--DLNIRDSEGS 609 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g---~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga--d~n~~d~~G~ 609 (887)
..+.+|.||||+|+..| +.++++.||++||+++.+|.+|+||||+||..| +.++|++|+++|+ +++..|..+.
T Consensus 36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d 115 (672)
T PHA02730 36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND 115 (672)
T ss_pred hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence 34567899999999997 599999999999999999999999999999976 7999999999965 5588888899
Q ss_pred cHHHHHHh--cCCHHHHHHHHH-CCCCcCCC-------CCchhHhHHHHhCCHHHHHHHHHcCCCCc-------cCCCCC
Q 002728 610 VPLWEAML--GKHEPVVRILAE-NGALISSS-------DVGHFACTAIEQNDLLLLEKIVHYGGDVT-------QLTSNG 672 (887)
Q Consensus 610 tpL~~A~~--~~~~~~v~~Ll~-~g~~~~~~-------~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~-------~~d~~g 672 (887)
+|||.++. +++.+++++|++ .+++++.. .+-.+..+++..++.+++++|+++|++++ ..|..+
T Consensus 116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~ 195 (672)
T PHA02730 116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR 195 (672)
T ss_pred chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence 99999999 899999999996 66776554 23356688999999999999999999996 234445
Q ss_pred C-cHhHHH------HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHhcCCHHHHHHHhc
Q 002728 673 T-TPLHVA------ISEGNIEIVKFLIDQGSDIDKPDIHGWTPRAL--ADHQGQEDIQILLQM 726 (887)
Q Consensus 673 ~-TpLh~A------a~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~--A~~~g~~~i~~lL~~ 726 (887)
. |.||++ +..++.|++++|+++|||+|.+|..|.||||+ |...|+.|++++|.+
T Consensus 196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~ 258 (672)
T PHA02730 196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK 258 (672)
T ss_pred cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence 5 445532 56789999999999999999999999999994 666778999999998
No 42
>PHA02917 ankyrin-like protein; Provisional
Probab=99.90 E-value=4.5e-23 Score=242.43 Aligned_cols=179 Identities=20% Similarity=0.158 Sum_probs=155.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH----HHHHHH
Q 002728 555 GLLLHQLLRRGSDPNELDNNGRTALHIAASR---GHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHE----PVVRIL 627 (887)
Q Consensus 555 ~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~----~~v~~L 627 (887)
.+.+++|+..|..++..|.+|+||||+||.. |+.++|++|+++|+|++.+|.+|+||||+|+..|+. +++++|
T Consensus 12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L 91 (661)
T PHA02917 12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL 91 (661)
T ss_pred HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence 4678999999999998899999999998665 889999999999999999999999999999999995 456788
Q ss_pred HHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHH--HcCCHHHHHHHHhCCCCCCCCCC--
Q 002728 628 AENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAI--SEGNIEIVKFLIDQGSDIDKPDI-- 703 (887)
Q Consensus 628 l~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa--~~g~~~~v~~Ll~~Gadv~~~d~-- 703 (887)
++.+...+..+....++.|+..++.+++++|+++|+|+|.+|.+|+||||.|+ ..|+.+++++|+++|||++.+|.
T Consensus 92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~ 171 (661)
T PHA02917 92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD 171 (661)
T ss_pred HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence 88754455555556667899999999999999999999999999999999654 57899999999999999987654
Q ss_pred -CC-----------CCHHHHHHh-----------cCCHHHHHHHhcCCCCCCC
Q 002728 704 -HG-----------WTPRALADH-----------QGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 704 -~g-----------~Tpl~~A~~-----------~g~~~i~~lL~~~~~~~~~ 733 (887)
.| .||||+|+. .++.+++++|.++|++...
T Consensus 172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~ 224 (661)
T PHA02917 172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS 224 (661)
T ss_pred ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc
Confidence 34 599999986 4689999999999987654
No 43
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=198.15 Aligned_cols=188 Identities=24% Similarity=0.224 Sum_probs=172.4
Q ss_pred cCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
+.+.++..+++.|+-+|+...+...|..|+..|+.+..+++|+.+++.+.+.+.+..+.++ .+|..|..|.|||.||+
T Consensus 91 ~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAa 168 (296)
T KOG0502|consen 91 ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAA 168 (296)
T ss_pred CCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHH
Confidence 4566788999999999999999999999999999999999999999999999888776654 67899999999999999
Q ss_pred hcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 002728 617 LGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQ 694 (887)
Q Consensus 617 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 694 (887)
..||.++|++|++.||+++.-. ..+.+.+|+..|..+++++|+.++.|+|.-|.+|-|||-+|++.|+++||+.||+.
T Consensus 169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s 248 (296)
T KOG0502|consen 169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS 248 (296)
T ss_pred hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence 9999999999999999987754 44778899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhc
Q 002728 695 GSDIDKPDIHGWTPRALADHQGQEDIQILLQM 726 (887)
Q Consensus 695 Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~ 726 (887)
|||++..|..|++++++|+..|...+.+.+.+
T Consensus 249 GAd~t~e~dsGy~~mdlAValGyr~Vqqvie~ 280 (296)
T KOG0502|consen 249 GADVTQEDDSGYWIMDLAVALGYRIVQQVIEK 280 (296)
T ss_pred CCCcccccccCCcHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999855544443
No 44
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.90 E-value=3.3e-24 Score=253.31 Aligned_cols=191 Identities=31% Similarity=0.439 Sum_probs=117.3
Q ss_pred CCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRG-HEHCVVLLLEYGADLNIRDSEGSVPLWEAMLG 618 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~ 618 (887)
.++.||||.|+..++..+++.++++|+++|..|..|.||+|+|+..| +.+.+..+++.|+++|..-..|.||||.|+..
T Consensus 405 k~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~ 484 (1143)
T KOG4177|consen 405 KNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE 484 (1143)
T ss_pred CCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc
Confidence 34445555555555555555555555555555555555555555555 55555555555555555555555555555555
Q ss_pred CCHHHHHHHHHC---------------------------------CCCcCCCCC--chhHhHHHHhCCHHHHHHHHHcCC
Q 002728 619 KHEPVVRILAEN---------------------------------GALISSSDV--GHFACTAIEQNDLLLLEKIVHYGG 663 (887)
Q Consensus 619 ~~~~~v~~Ll~~---------------------------------g~~~~~~~~--~~~~~~a~~~~~~~~~~~Ll~~g~ 663 (887)
||.+++.+|++. |++++..+. .++++.|+..|+.++|++|+++|+
T Consensus 485 Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gA 564 (1143)
T KOG4177|consen 485 GHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGA 564 (1143)
T ss_pred CCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCc
Confidence 555555555554 444443332 356666777777777777777777
Q ss_pred CCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCC
Q 002728 664 DVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 664 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~ 730 (887)
|++.+|+.|+||||.||..|+.+|+++|+++||++|..|.+|.|||+.|...|+.+++++|...++.
T Consensus 565 dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~ 631 (1143)
T KOG4177|consen 565 DVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT 631 (1143)
T ss_pred cccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence 7777777777777777777777777777777777777777777777777777777777777666655
No 45
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.89 E-value=4e-22 Score=203.03 Aligned_cols=157 Identities=15% Similarity=0.165 Sum_probs=140.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHHCCCCcCCCC---CchhHhHHH
Q 002728 573 NNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK--HEPVVRILAENGALISSSD---VGHFACTAI 647 (887)
Q Consensus 573 ~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~--~~~~v~~Ll~~g~~~~~~~---~~~~~~~a~ 647 (887)
..+.||||+|+..|+.++|+.|++. +|..|..|.||||.|+.++ +.+++++|+++|++++..+ +.++++.|+
T Consensus 19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~ 95 (209)
T PHA02859 19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL 95 (209)
T ss_pred hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence 5679999999999999999999975 5678899999999999855 8999999999999998764 347788776
Q ss_pred Hh---CCHHHHHHHHHcCCCCccCCCCCCcHhHHHHH--cCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-HHhcCCHHHH
Q 002728 648 EQ---NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAIS--EGNIEIVKFLIDQGSDIDKPDIHGWTPRAL-ADHQGQEDIQ 721 (887)
Q Consensus 648 ~~---~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~-A~~~g~~~i~ 721 (887)
.. ++.+++++|+++|+++|.+|.+|.||||.|+. .++.+++++|+++|+|++.+|..|.||+|. |+..++.+++
T Consensus 96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv 175 (209)
T PHA02859 96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF 175 (209)
T ss_pred HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence 53 47999999999999999999999999999976 478999999999999999999999999995 5678899999
Q ss_pred HHHhcCCCCCC
Q 002728 722 ILLQMKPEPKK 732 (887)
Q Consensus 722 ~lL~~~~~~~~ 732 (887)
++|.++++...
T Consensus 176 ~~Ll~~Gadi~ 186 (209)
T PHA02859 176 DFLTSLGIDIN 186 (209)
T ss_pred HHHHHcCCCCC
Confidence 99999887654
No 46
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.89 E-value=6.8e-23 Score=242.25 Aligned_cols=184 Identities=27% Similarity=0.331 Sum_probs=171.1
Q ss_pred cCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
.....+-|+||.|+..|+.++++.+++.++..+.....|-|+||.|+..++..+++.++++|++++.++..|.||||.||
T Consensus 469 ~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~ 548 (1143)
T KOG4177|consen 469 AVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV 548 (1143)
T ss_pred hhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHH
Confidence 34557889999999999999999999999888888899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHCCCCcCCCCC--chhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 002728 617 LGKHEPVVRILAENGALISSSDV--GHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQ 694 (887)
Q Consensus 617 ~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 694 (887)
..|+.++|++|+++|++++..+. .+++|.|+..|+.+++++|+++|+++|..|.+|.||||+|+..|+.+++++|+..
T Consensus 549 ~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~ 628 (1143)
T KOG4177|consen 549 HYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV 628 (1143)
T ss_pred hcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence 99999999999999999988764 4788999999999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCCCCCCCHHHHHHhcCCHHH
Q 002728 695 GSD-----IDKPDIHGWTPRALADHQGQEDI 720 (887)
Q Consensus 695 Gad-----v~~~d~~g~Tpl~~A~~~g~~~i 720 (887)
|++ ....+..|.+|.+++........
T Consensus 629 ~~~~~~~~~~~e~~~g~~p~~v~e~~~~~~~ 659 (1143)
T KOG4177|consen 629 TATPAATDPVKENRKGAVPEDVAEELDTDRQ 659 (1143)
T ss_pred cCccccccchhhhhcccChhhHHHHhhhhhh
Confidence 998 66677889999999987655433
No 47
>PHA02792 ankyrin-like protein; Provisional
Probab=99.88 E-value=4.6e-22 Score=224.74 Aligned_cols=195 Identities=16% Similarity=0.112 Sum_probs=161.3
Q ss_pred CCCcchHHHHHHH-hCCHHHHHHHHHcCCCCC------------------------------------CCCCCCCcHHHH
Q 002728 539 RMDLPLSLSFAAV-RGDGLLLHQLLRRGSDPN------------------------------------ELDNNGRTALHI 581 (887)
Q Consensus 539 ~~~~~~~l~~Aa~-~g~~~~l~~Ll~~g~~~n------------------------------------~~d~~G~TpLh~ 581 (887)
+.++.+++++|+. .|+.++++.|+++||+++ ..|..|+||||+
T Consensus 102 ~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~ 181 (631)
T PHA02792 102 KNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYY 181 (631)
T ss_pred cCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHH
Confidence 4456789999976 699999999999998743 234569999999
Q ss_pred HHHcC-------CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC--CHHHHHHHHHC----------------------
Q 002728 582 AASRG-------HEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK--HEPVVRILAEN---------------------- 630 (887)
Q Consensus 582 Aa~~g-------~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~--~~~~v~~Ll~~---------------------- 630 (887)
|+.++ +.+++++|+++|++++.+|..|.||||+|+.+. ..+++++|++.
T Consensus 182 ~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~ 261 (631)
T PHA02792 182 YIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNK 261 (631)
T ss_pred HHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccC
Confidence 99999 899999999999999999999999999999888 56677766542
Q ss_pred ---------------------------------------------------------------------CCCcCCCCCch
Q 002728 631 ---------------------------------------------------------------------GALISSSDVGH 641 (887)
Q Consensus 631 ---------------------------------------------------------------------g~~~~~~~~~~ 641 (887)
|++........
T Consensus 262 ~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n 341 (631)
T PHA02792 262 NHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHIN 341 (631)
T ss_pred ccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcch
Confidence 21211111122
Q ss_pred hHhHHHHhCCHHHHHHHHHcCCCCccCCCCC--CcHhHHHHHcCCHH---HHHHHHhCCCCCCCCCCCCCCHHHHHHhcC
Q 002728 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNG--TTPLHVAISEGNIE---IVKFLIDQGSDIDKPDIHGWTPRALADHQG 716 (887)
Q Consensus 642 ~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g--~TpLh~Aa~~g~~~---~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g 716 (887)
.++.|+..|+.+++++|+++|+|+|.+|.+| .||||.|+..+..+ ++++|+++|||+|.+|..|+||||+|+..+
T Consensus 342 ~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~ 421 (631)
T PHA02792 342 KYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH 421 (631)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence 3345788999999999999999999999775 69999988776654 589999999999999999999999999999
Q ss_pred CHHHHHHHhcCCCCCCC
Q 002728 717 QEDIQILLQMKPEPKKA 733 (887)
Q Consensus 717 ~~~i~~lL~~~~~~~~~ 733 (887)
+.+++++|.++++....
T Consensus 422 n~eivelLLs~GADIN~ 438 (631)
T PHA02792 422 SVSLVEWLIDNGADINI 438 (631)
T ss_pred CHHHHHHHHHCCCCCCC
Confidence 99999999999887543
No 48
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-22 Score=217.01 Aligned_cols=190 Identities=32% Similarity=0.408 Sum_probs=133.5
Q ss_pred CcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC
Q 002728 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620 (887)
Q Consensus 541 ~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~ 620 (887)
.-+-.+.-|+..|+.+-+..|+..|+++|..+.+|.|+||-||...+.+||++|+++|++||..|.+||||||.|+..||
T Consensus 39 ~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~ 118 (527)
T KOG0505|consen 39 EDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGY 118 (527)
T ss_pred CchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccccc
Confidence 33456888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcCCCCCc--h------------hHhHH-HHhC-C------------HHHHHHHHHcCCCCccCCCCC
Q 002728 621 EPVVRILAENGALISSSDVG--H------------FACTA-IEQN-D------------LLLLEKIVHYGGDVTQLTSNG 672 (887)
Q Consensus 621 ~~~v~~Ll~~g~~~~~~~~~--~------------~~~~a-~~~~-~------------~~~~~~Ll~~g~~~~~~d~~g 672 (887)
..++++|+++|+++...+.. . .+-.+ ...| + +.=++..+..|.+.+..+..|
T Consensus 119 ~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG 198 (527)
T KOG0505|consen 119 LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARG 198 (527)
T ss_pred HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999864322111 0 00000 0000 0 011122233455555555556
Q ss_pred CcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCC
Q 002728 673 TTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 673 ~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~ 730 (887)
.|+||.|+.+|..++.++|+++|.+++.+|.+||||||.|+..|+.+++++|..+++.
T Consensus 199 ~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~ 256 (527)
T KOG0505|consen 199 ATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD 256 (527)
T ss_pred chHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence 6666666666666666666666666666666666666666666666666655555544
No 49
>PHA02730 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.3e-21 Score=223.71 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=162.8
Q ss_pred hhcCCCCcchHHHH--HHHhCCHHHHHHHHH--------------------------------cCCCCCC----------
Q 002728 535 LARGRMDLPLSLSF--AAVRGDGLLLHQLLR--------------------------------RGSDPNE---------- 570 (887)
Q Consensus 535 la~~~~~~~~~l~~--Aa~~g~~~~l~~Ll~--------------------------------~g~~~n~---------- 570 (887)
+...+.++.||||+ |+..|+.++++.|++ +|+|...
T Consensus 228 IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~ 307 (672)
T PHA02730 228 IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHT 307 (672)
T ss_pred CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCc
Confidence 34567789999995 556678999999999 7888755
Q ss_pred ----------CCCCCCc---------------------HHHHHHHcC---CHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 571 ----------LDNNGRT---------------------ALHIAASRG---HEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 571 ----------~d~~G~T---------------------pLh~Aa~~g---~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
.|..|.+ .||.=.+.| +.+++++|+++|||+|.. ..|.||||.|+
T Consensus 308 ~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa 386 (672)
T PHA02730 308 LIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYF 386 (672)
T ss_pred chhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHH
Confidence 4566755 677666655 689999999999999985 79999999998
Q ss_pred hcCC----HHHHHHHHHCCC--CcCCCCC--chhHh---HHHHhC---------CHHHHHHHHHcCCCCccCCCCCCcHh
Q 002728 617 LGKH----EPVVRILAENGA--LISSSDV--GHFAC---TAIEQN---------DLLLLEKIVHYGGDVTQLTSNGTTPL 676 (887)
Q Consensus 617 ~~~~----~~~v~~Ll~~g~--~~~~~~~--~~~~~---~a~~~~---------~~~~~~~Ll~~g~~~~~~d~~g~TpL 676 (887)
..++ .+++++|+++|+ +++..+. .++++ .|...+ ..+++++|+.+|+|+|.+|..|+|||
T Consensus 387 ~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPL 466 (672)
T PHA02730 387 VNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLL 466 (672)
T ss_pred HHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHH
Confidence 8875 899999999998 4665443 34444 233222 23679999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHh--cCCHHHHHHHhcCCCCCC
Q 002728 677 HVAISEGNIEIVKFLIDQGSDIDKPDI-HGWTPRALADH--QGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 677 h~Aa~~g~~~~v~~Ll~~Gadv~~~d~-~g~Tpl~~A~~--~g~~~i~~lL~~~~~~~~ 732 (887)
|+|+..++.+++++|+++||+++.+|. .|.||+|+|+. .++.+++++|+++++...
T Consensus 467 h~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 467 YYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence 999999999999999999999999997 59999999987 478999999999987653
No 50
>PHA02792 ankyrin-like protein; Provisional
Probab=99.87 E-value=2.2e-21 Score=219.23 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=161.4
Q ss_pred hcCCCCcchHHHHHHHhC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC----------------------
Q 002728 536 ARGRMDLPLSLSFAAVRG-------DGLLLHQLLRRGSDPNELDNNGRTALHIAASRG---------------------- 586 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~g-------~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g---------------------- 586 (887)
...+..+.||||+|+..+ +.++++.|+++|++++..|..|.||||+|+.+.
T Consensus 169 ~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~ 248 (631)
T PHA02792 169 DYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMN 248 (631)
T ss_pred ccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHh
Confidence 345677999999999999 899999999999999999999999999999866
Q ss_pred -----------------------------------------------------------------------CHHHHHHHH
Q 002728 587 -----------------------------------------------------------------------HEHCVVLLL 595 (887)
Q Consensus 587 -----------------------------------------------------------------------~~~~v~~Ll 595 (887)
+.+++++|+
T Consensus 249 ~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LI 328 (631)
T PHA02792 249 ILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMI 328 (631)
T ss_pred HHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 234666666
Q ss_pred hCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCc----hhHhHHHHhCCH---HHHHHHHHcCCCCccC
Q 002728 596 EYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVG----HFACTAIEQNDL---LLLEKIVHYGGDVTQL 668 (887)
Q Consensus 596 ~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----~~~~~a~~~~~~---~~~~~Ll~~g~~~~~~ 668 (887)
++|++.+ + ..+..+++.|+..|+.+++++|+++||+++..+.. ++++.|+..+.. ++++.|+++|+|+|.+
T Consensus 329 d~Ga~~~-r-~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~k 406 (631)
T PHA02792 329 DEGATLY-R-FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKI 406 (631)
T ss_pred HCCCccc-c-CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccc
Confidence 6666654 1 22556789999999999999999999999877643 445555555443 4688999999999999
Q ss_pred CCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHh---cC-------CHHHHHHHhcCCCCC
Q 002728 669 TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADH---QG-------QEDIQILLQMKPEPK 731 (887)
Q Consensus 669 d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~---~g-------~~~i~~lL~~~~~~~ 731 (887)
|..|+||||.|+..++.+++++|+++||+++.+|..|.||+++|.. .+ ..+++++|+++++..
T Consensus 407 D~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i 479 (631)
T PHA02792 407 DKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI 479 (631)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999976 22 245678888777543
No 51
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-22 Score=203.94 Aligned_cols=161 Identities=29% Similarity=0.422 Sum_probs=146.4
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHhc-----CCHHHHHHHHHCCCCcCCC---C
Q 002728 568 PNELDNNGRTALHIAASRGHEHCVVLLLEYG-ADLNIRDSEGSVPLWEAMLG-----KHEPVVRILAENGALISSS---D 638 (887)
Q Consensus 568 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-ad~n~~d~~G~tpL~~A~~~-----~~~~~v~~Ll~~g~~~~~~---~ 638 (887)
+|..|.+|+|+||||+++++.++|+.||+.| ||+|.+|+.|.||+|+|+.. .+.++|.-|.+.|. +|.. .
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~ 339 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQH 339 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhh
Confidence 5788999999999999999999999999998 89999999999999999864 46778999998873 4432 3
Q ss_pred CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhcCC
Q 002728 639 VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID-QGSDIDKPDIHGWTPRALADHQGQ 717 (887)
Q Consensus 639 ~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gadv~~~d~~g~Tpl~~A~~~g~ 717 (887)
+.+.+++|+..|+.++++.||.+|+|||.+|.+|.|||+.||.+||.|++++||. .++|+...|.+|-|+|.+|...||
T Consensus 340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh 419 (452)
T KOG0514|consen 340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH 419 (452)
T ss_pred cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence 4578899999999999999999999999999999999999999999999999997 589999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 002728 718 EDIQILLQMKPE 729 (887)
Q Consensus 718 ~~i~~lL~~~~~ 729 (887)
.+|.-+|-.+..
T Consensus 420 ~eIa~mlYa~~n 431 (452)
T KOG0514|consen 420 REIAVMLYAHMN 431 (452)
T ss_pred hHHHHHHHHHHH
Confidence 999999976554
No 52
>PHA02795 ankyrin-like protein; Provisional
Probab=99.86 E-value=5.2e-21 Score=209.00 Aligned_cols=172 Identities=16% Similarity=0.016 Sum_probs=157.6
Q ss_pred HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC------CCCCCCCcHHHHHHh--cCCHHHHHHHH
Q 002728 557 LLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLN------IRDSEGSVPLWEAML--GKHEPVVRILA 628 (887)
Q Consensus 557 ~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n------~~d~~G~tpL~~A~~--~~~~~~v~~Ll 628 (887)
+-++++.+|+++|..+.+| +||..+..+++++|+.+|+++| .++..++|+||.|+. .|+.+++++|+
T Consensus 64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI 138 (437)
T PHA02795 64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV 138 (437)
T ss_pred HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence 3467889999999988888 9999999999999999999999 888999999999999 99999999999
Q ss_pred HCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCC------CCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 002728 629 ENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLT------SNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPD 702 (887)
Q Consensus 629 ~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d------~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d 702 (887)
++||+++..+..++++.|+..++.+++++|+++|++.+... ..|.||+|.|+..++.+++++|+++|||+|.+|
T Consensus 139 ~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD 218 (437)
T PHA02795 139 DHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLD 218 (437)
T ss_pred HCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCC
Confidence 99999998777889999999999999999999998543222 348899999999999999999999999999999
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHhcCCCCCCC
Q 002728 703 IHGWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 703 ~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
..|.||||+|+..|+.+++++|.++|+....
T Consensus 219 ~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~ 249 (437)
T PHA02795 219 AGGRTLLYRAIYAGYIDLVSWLLENGANVNA 249 (437)
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 9999999999999999999999999987643
No 53
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.8e-21 Score=204.17 Aligned_cols=237 Identities=17% Similarity=0.252 Sum_probs=161.6
Q ss_pred ccccccceEECCCCchH-HHHHHHHHHHHHHHHHhhhhee--eccc-----------------CCCCCcchhhHHHHHHH
Q 002728 62 RRITLRRFIISPFEPRY-RLWETFLVFLVFYTAWACPFEF--GFLN-----------------QPSRPLAITDNVVNAIF 121 (887)
Q Consensus 62 ~~~~~~~~ii~P~s~~~-~~W~~~~~~~~~~~~~~~P~~~--~f~~-----------------~~~~~~~~~~~~~~~~f 121 (887)
-+.++...+-.|+|... ++...+.++.++.++...-+.. .|.. .+...+.+++.++.++|
T Consensus 174 ~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~WF 253 (477)
T KOG3713|consen 174 LRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIAWF 253 (477)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHHHH
Confidence 44556667889997653 5666555555555554443321 1211 12234778999999999
Q ss_pred HHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhh-hhhhhhhccchhhhhhh--ccc----hh----hHhhHHHHHHHH
Q 002728 122 AIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTW-LTFDVISTIPSEAGRKF--LPS----AL----QAYGYFNMLRLW 190 (887)
Q Consensus 122 ~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~-f~~Dlis~lP~~~~~~~--~~~----~~----~~~~~~~llrl~ 190 (887)
.+++++||..+ .-..+|+|+. -++|++|++||++-... +.. .+ ...+++|++|++
T Consensus 254 T~E~llR~~~~--------------P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~ 319 (477)
T KOG3713|consen 254 TFEYLLRFLVA--------------PNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRIL 319 (477)
T ss_pred HHHHHHHHHcC--------------chHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHH
Confidence 99999999988 4456788886 89999999999864321 111 11 334445555555
Q ss_pred HHHHHHHHHHHHHH---hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHH
Q 002728 191 RLRRVSRLFARLEK---DRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTS 267 (887)
Q Consensus 191 rl~r~~~~~~~l~~---~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~s 267 (887)
|++|+.|...-|.. ..+.++ ..+..+++++...+-+++-+.|+++...+++. +..-..|
T Consensus 320 RI~KLaRhS~GLr~lg~Tlr~S~--~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~----------------FtSIPa~ 381 (477)
T KOG3713|consen 320 RIFKLARHSTGLRTLGLTLRRSY--RELGLLLLFLAVGIVIFSTLVYFAEKDEPDTK----------------FTSIPAG 381 (477)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC----------------Cccccch
Confidence 55555554444432 222222 33344556666667788999998886544433 3344569
Q ss_pred HHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 002728 268 IYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTI 330 (887)
Q Consensus 268 lyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~ 330 (887)
+|||++|||||||||++|+|..+++++...++.|+++.|+.|..|-+-+.+.+++.++.++..
T Consensus 382 ~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~ 444 (477)
T KOG3713|consen 382 FWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAP 444 (477)
T ss_pred hheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999888877766655544443
No 54
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.86 E-value=5.4e-21 Score=187.33 Aligned_cols=137 Identities=21% Similarity=0.267 Sum_probs=103.8
Q ss_pred CCcchHHHHHHHhCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH---HHHHHhCCCCCCCCC-CCCCcH
Q 002728 540 MDLPLSLSFAAVRGDG----LLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHC---VVLLLEYGADLNIRD-SEGSVP 611 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~----~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~---v~~Ll~~gad~n~~d-~~G~tp 611 (887)
.+..++||.||..|+. ++++.|++.|++++..|.+|+||||+||..|+.+. +++|+++|+++|.+| ..|.||
T Consensus 18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~Tp 97 (166)
T PHA02743 18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTL 97 (166)
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcH
Confidence 3455678888888887 45555667777778778888888888888777544 678888888888887 478888
Q ss_pred HHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHH
Q 002728 612 LWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691 (887)
Q Consensus 612 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~L 691 (887)
||+|+..++.+++++|++ +.|++++.+|..|+||||+|+..|+.+++++|
T Consensus 98 Lh~A~~~g~~~iv~~Ll~------------------------------~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~L 147 (166)
T PHA02743 98 LHIAASTKNYELAEWLCR------------------------------QLGVNLGAINYQHETAYHIAYKMRDRRMMEIL 147 (166)
T ss_pred HHHHHHhCCHHHHHHHHh------------------------------ccCCCccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 888887777777777664 12346677778888888888888888888888
Q ss_pred HhCCCCCCCCCCCCC
Q 002728 692 IDQGSDIDKPDIHGW 706 (887)
Q Consensus 692 l~~Gadv~~~d~~g~ 706 (887)
+++||+++.++..|.
T Consensus 148 l~~ga~~~~~~~~~~ 162 (166)
T PHA02743 148 RANGAVCDDPLSIGL 162 (166)
T ss_pred HHcCCCCCCcccCCc
Confidence 888888888877764
No 55
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.86 E-value=5e-21 Score=174.51 Aligned_cols=146 Identities=28% Similarity=0.259 Sum_probs=129.3
Q ss_pred CcchHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC
Q 002728 541 DLPLSLSFAAVRGDGLLLHQLLRRGSD-PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 541 ~~~~~l~~Aa~~g~~~~l~~Ll~~g~~-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~ 619 (887)
+..-.+.+|+..|....|+.||+..++ +|.+|.+|+||||-|+++||.++|+.|+..||+++.+...|+||||-||..+
T Consensus 62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN 141 (228)
T ss_pred CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence 334567899999999999999998877 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCH-HHHHHHHh-CCCC
Q 002728 620 HEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNI-EIVKFLID-QGSD 697 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~-~~v~~Ll~-~Gad 697 (887)
+.+++..|+++|+ |||+.....+||||+||...+. ..+++|+. .+.+
T Consensus 142 N~~va~~LLqhga-------------------------------DVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~ 190 (228)
T KOG0512|consen 142 NFEVAGRLLQHGA-------------------------------DVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH 190 (228)
T ss_pred chhHHHHHHhccC-------------------------------cccccccccchhhHHhhcccchHHHHHHHhhccccC
Confidence 9999888887766 7777778889999999977664 45676665 6788
Q ss_pred CCCCCCCCCCHHHHHHhcCC
Q 002728 698 IDKPDIHGWTPRALADHQGQ 717 (887)
Q Consensus 698 v~~~d~~g~Tpl~~A~~~g~ 717 (887)
+-.++..+.||+++|.+.+-
T Consensus 191 pg~~nn~eeta~~iARRT~~ 210 (228)
T KOG0512|consen 191 PGLKNNLEETAFDIARRTSM 210 (228)
T ss_pred hhhhcCccchHHHHHHHhhh
Confidence 88899999999999998764
No 56
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.85 E-value=6.5e-21 Score=232.09 Aligned_cols=187 Identities=20% Similarity=0.114 Sum_probs=131.8
Q ss_pred CCCCcchHHH-HHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHhCCCC------CC----C
Q 002728 538 GRMDLPLSLS-FAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRG---HEHCVVLLLEYGAD------LN----I 603 (887)
Q Consensus 538 ~~~~~~~~l~-~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~gad------~n----~ 603 (887)
.+..+.|||| .|+..++.++++.|+++|+ .+..|.||||.|+..+ ..+++..+.+.+.+ ++ .
T Consensus 48 ~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~ 123 (743)
T TIGR00870 48 PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTS 123 (743)
T ss_pred cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccccc
Confidence 4455677777 6666777777777777766 4567777777777522 22333334433322 11 1
Q ss_pred CCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCC----------------CchhHhHHHHhCCHHHHHHHHHcCCCCcc
Q 002728 604 RDSEGSVPLWEAMLGKHEPVVRILAENGALISSSD----------------VGHFACTAIEQNDLLLLEKIVHYGGDVTQ 667 (887)
Q Consensus 604 ~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~----------------~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~ 667 (887)
.+..|.||||+|+..|+.+++++|+++|++++... +.++++.|+..|+.+++++|+++|+|+|.
T Consensus 124 ~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~ 203 (743)
T TIGR00870 124 EFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILT 203 (743)
T ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh
Confidence 23458888888888888888888888888876432 33567788888888888888888888888
Q ss_pred CCCCCCcHhHHHHHcC---------CHHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHhcCCHHHHHHHhcCC
Q 002728 668 LTSNGTTPLHVAISEG---------NIEIVKFLIDQGSDI-------DKPDIHGWTPRALADHQGQEDIQILLQMKP 728 (887)
Q Consensus 668 ~d~~g~TpLh~Aa~~g---------~~~~v~~Ll~~Gadv-------~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~ 728 (887)
+|..|+||||+|+.++ ...+.+++++.+++. +..|.+|.||+|+|+..|+.+++++|++.+
T Consensus 204 ~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~ 280 (743)
T TIGR00870 204 ADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK 280 (743)
T ss_pred HhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence 8888888888888876 234566666665554 556888888888888888888888887644
No 57
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=184.66 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=124.0
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCC
Q 002728 564 RGSDPNELDNNGRTALHIAASRGHE----HCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDV 639 (887)
Q Consensus 564 ~g~~~n~~d~~G~TpLh~Aa~~g~~----~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 639 (887)
+|++++..+.++.++||.||+.|+. +++++|+++|++++.+|..|+||||+|+..|+.+.+
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~--------------- 73 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAV--------------- 73 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHH---------------
Confidence 5778888999999999999999998 667788899999999999999999999998876542
Q ss_pred chhHhHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhcCC
Q 002728 640 GHFACTAIEQNDLLLLEKIVHYGGDVTQLT-SNGTTPLHVAISEGNIEIVKFLID-QGSDIDKPDIHGWTPRALADHQGQ 717 (887)
Q Consensus 640 ~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gadv~~~d~~g~Tpl~~A~~~g~ 717 (887)
+++++|+++|+++|.+| ..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|+..++
T Consensus 74 -------------~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~ 140 (166)
T PHA02743 74 -------------MKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD 140 (166)
T ss_pred -------------HHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC
Confidence 22344455566888888 489999999999999999999995 899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCC
Q 002728 718 EDIQILLQMKPEPKKA 733 (887)
Q Consensus 718 ~~i~~lL~~~~~~~~~ 733 (887)
.+++++|..+++....
T Consensus 141 ~~iv~~Ll~~ga~~~~ 156 (166)
T PHA02743 141 RRMMEILRANGAVCDD 156 (166)
T ss_pred HHHHHHHHHcCCCCCC
Confidence 9999999999876644
No 58
>PHA02741 hypothetical protein; Provisional
Probab=99.84 E-value=1.3e-20 Score=185.51 Aligned_cols=136 Identities=19% Similarity=0.261 Sum_probs=114.8
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCch
Q 002728 568 PNELDNNGRTALHIAASRGHEHCVVLLLE------YGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGH 641 (887)
Q Consensus 568 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~ 641 (887)
++..|.+|+||||+||..|+.++++.|+. .|+++|.+|..|.||||+|+..|+.+++
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~----------------- 76 (169)
T PHA02741 14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA----------------- 76 (169)
T ss_pred hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-----------------
Confidence 34677899999999999999999998853 3688999999999999999998885332
Q ss_pred hHhHHHHhCCHHHHHHHHHcCCCCccCCC-CCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhcCCHH
Q 002728 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTS-NGTTPLHVAISEGNIEIVKFLID-QGSDIDKPDIHGWTPRALADHQGQED 719 (887)
Q Consensus 642 ~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~-~Gadv~~~d~~g~Tpl~~A~~~g~~~ 719 (887)
.++++.|+++|+++|.+|. .|+||||+|+..|+.+++++|+. .|++++.+|..|+||+++|...++.+
T Consensus 77 ----------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~ 146 (169)
T PHA02741 77 ----------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA 146 (169)
T ss_pred ----------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence 1344455566668888885 89999999999999999999997 59999999999999999999999999
Q ss_pred HHHHHhcCCCC
Q 002728 720 IQILLQMKPEP 730 (887)
Q Consensus 720 i~~lL~~~~~~ 730 (887)
++++|.+.++.
T Consensus 147 iv~~L~~~~~~ 157 (169)
T PHA02741 147 MMQILREIVAT 157 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 59
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.84 E-value=4.5e-20 Score=194.43 Aligned_cols=152 Identities=21% Similarity=0.229 Sum_probs=128.3
Q ss_pred CCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHH
Q 002728 539 RMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELD----NNGRTALHIAASRGHEHCVVLLLEYGADLNIR-DSEGSVPLW 613 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d----~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~-d~~G~tpL~ 613 (887)
+....++||.|+..|+.++++.|+++|+++|..+ ..|.||||+|+..|+.+++++|+++|||+|.+ +..|.||||
T Consensus 30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh 109 (300)
T PHA02884 30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLY 109 (300)
T ss_pred cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHH
Confidence 3444567888888899999999999999999874 58999999999999999999999999999986 467999999
Q ss_pred HHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 002728 614 EAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693 (887)
Q Consensus 614 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~ 693 (887)
.|+..++.+++++|+++|+ +++.+|.+|+||||.|+..++.+++..+.
T Consensus 110 ~Aa~~~~~eivklLL~~GA-------------------------------din~kd~~G~TpL~~A~~~~~~~~~~~~~- 157 (300)
T PHA02884 110 ISVLHGCLKCLEILLSYGA-------------------------------DINIQTNDMVTPIELALMICNNFLAFMIC- 157 (300)
T ss_pred HHHHcCCHHHHHHHHHCCC-------------------------------CCCCCCCCCCCHHHHHHHhCChhHHHHhc-
Confidence 9999998888888877665 77888899999999999999999886665
Q ss_pred CCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCC
Q 002728 694 QGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPE 729 (887)
Q Consensus 694 ~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~ 729 (887)
|+. .+..+.+|.+++ ++.+++++|..+..
T Consensus 158 -~~~---~~~~~~~~~~~~---~n~ei~~~Lish~v 186 (300)
T PHA02884 158 -DNE---ISNFYKHPKKIL---INFDILKILVSHFI 186 (300)
T ss_pred -CCc---ccccccChhhhh---ccHHHHHHHHHHHH
Confidence 433 466778888875 46889999987765
No 60
>PHA02741 hypothetical protein; Provisional
Probab=99.83 E-value=6.8e-20 Score=180.49 Aligned_cols=138 Identities=21% Similarity=0.282 Sum_probs=120.8
Q ss_pred HHHhhcCCCCcchHHHHHHHhCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCC
Q 002728 532 EQKLARGRMDLPLSLSFAAVRGDGLLLHQLLR------RGSDPNELDNNGRTALHIAASRGH----EHCVVLLLEYGADL 601 (887)
Q Consensus 532 e~~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~------~g~~~n~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~gad~ 601 (887)
+..+...+.++.|+||.||..|+.++++.|+. .|+++|.+|..|+||||+|+..|+ .+++++|+++|+++
T Consensus 11 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi 90 (169)
T PHA02741 11 EEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI 90 (169)
T ss_pred HHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence 33455567789999999999999999999854 368899999999999999999999 58999999999999
Q ss_pred CCCCC-CCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHH
Q 002728 602 NIRDS-EGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAI 680 (887)
Q Consensus 602 n~~d~-~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa 680 (887)
|.+|. +|+||||+|+..++.+++++|++. .|++++.+|.+|+||||.|+
T Consensus 91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~------------------------------~g~~~~~~n~~g~tpL~~A~ 140 (169)
T PHA02741 91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQ------------------------------PGIDLHFCNADNKSPFELAI 140 (169)
T ss_pred CCCCcCCCCCHHHHHHHcCCHHHHHHHHhC------------------------------CCCCCCcCCCCCCCHHHHHH
Confidence 99985 999999999999999999888863 13477788899999999999
Q ss_pred HcCCHHHHHHHHhCCCCCC
Q 002728 681 SEGNIEIVKFLIDQGSDID 699 (887)
Q Consensus 681 ~~g~~~~v~~Ll~~Gadv~ 699 (887)
..|+.+++++|++.++...
T Consensus 141 ~~~~~~iv~~L~~~~~~~~ 159 (169)
T PHA02741 141 DNEDVAMMQILREIVATSR 159 (169)
T ss_pred HCCCHHHHHHHHHHHHHhc
Confidence 9999999999999877643
No 61
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.82 E-value=3e-20 Score=205.03 Aligned_cols=186 Identities=25% Similarity=0.250 Sum_probs=108.0
Q ss_pred CCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~ 619 (887)
..+.+|||+||-.|+.++++.++.++..+|..+..|.||||.||++||.+++.+|+++|+|+-.+|..+.|+|-.|++-|
T Consensus 80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfg 159 (854)
T KOG0507|consen 80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFG 159 (854)
T ss_pred ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhh
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHCCCCcCC----------CCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHH
Q 002728 620 HEPVVRILAENGALISS----------SDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVK 689 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~~----------~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~ 689 (887)
..++++.|++....... ......+|+|+++|+.++++.|++.|.|+|....+| |+||.|+..|..++|+
T Consensus 160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr 238 (854)
T KOG0507|consen 160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVR 238 (854)
T ss_pred hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhh
Confidence 55555555554211100 011234466677777777777777777776665555 6777777777777777
Q ss_pred HHHhCCCCCCCCCCCCCCHHHHHHhcC---CHHHHHHHhc
Q 002728 690 FLIDQGSDIDKPDIHGWTPRALADHQG---QEDIQILLQM 726 (887)
Q Consensus 690 ~Ll~~Gadv~~~d~~g~Tpl~~A~~~g---~~~i~~lL~~ 726 (887)
+|++.|.+.+.+|.+|.|+|+.-...- ..+++-.+..
T Consensus 239 ~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~ 278 (854)
T KOG0507|consen 239 FLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN 278 (854)
T ss_pred HHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence 777777777777777777766544322 2344444443
No 62
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.80 E-value=1.4e-19 Score=175.78 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=108.3
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC--C-----CCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCc
Q 002728 568 PNELDNNGRTALHIAASRGHEHCVVLLLEYGA--D-----LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVG 640 (887)
Q Consensus 568 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga--d-----~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~ 640 (887)
++..|.+|+||||+||..|+. +.++...++ + ++.+|.+|.||||+|+..|+.+.+
T Consensus 10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~---------------- 71 (154)
T PHA02736 10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQ---------------- 71 (154)
T ss_pred HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHH----------------
Confidence 456788999999999999983 344433332 2 345689999999999998876432
Q ss_pred hhHhHHHHhCCHHHHHHHHHcCCCCccCC-CCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhcCCH
Q 002728 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLT-SNGTTPLHVAISEGNIEIVKFLID-QGSDIDKPDIHGWTPRALADHQGQE 718 (887)
Q Consensus 641 ~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gadv~~~d~~g~Tpl~~A~~~g~~ 718 (887)
++++.|+++|+++|.+| ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||+|+|+..|+.
T Consensus 72 ------------e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~ 139 (154)
T PHA02736 72 ------------EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDA 139 (154)
T ss_pred ------------HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCH
Confidence 22344555566888887 489999999999999999999998 5999999999999999999999999
Q ss_pred HHHHHHhcCCCCC
Q 002728 719 DIQILLQMKPEPK 731 (887)
Q Consensus 719 ~i~~lL~~~~~~~ 731 (887)
+++++|..+++..
T Consensus 140 ~i~~~Ll~~ga~~ 152 (154)
T PHA02736 140 KMMNILRAKGAQC 152 (154)
T ss_pred HHHHHHHHcCCCC
Confidence 9999999888654
No 63
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.80 E-value=2.7e-19 Score=173.69 Aligned_cols=131 Identities=21% Similarity=0.316 Sum_probs=109.3
Q ss_pred cCCCCcchHHHHHHHhCCHHHHHHHHHcCC--C-----CCCCCCCCCcHHHHHHHcCCH---HHHHHHHhCCCCCCCCCC
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGS--D-----PNELDNNGRTALHIAASRGHE---HCVVLLLEYGADLNIRDS 606 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~--~-----~n~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~gad~n~~d~ 606 (887)
+.+.++.||||+||..|+.. ..+...+. + ++..|.+|+||||+|+..|+. +++++|+++|+++|.+|.
T Consensus 12 ~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~ 89 (154)
T PHA02736 12 EPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER 89 (154)
T ss_pred hcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence 45667999999999999843 33322222 2 234689999999999999987 468899999999999984
Q ss_pred -CCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCH
Q 002728 607 -EGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNI 685 (887)
Q Consensus 607 -~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~ 685 (887)
.|+||||+|+..++.+++++|+++ .|++++.+|..|+||||+|+..|+.
T Consensus 90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~------------------------------~g~d~n~~~~~g~tpL~~A~~~~~~ 139 (154)
T PHA02736 90 VFGNTPLHIAVYTQNYELATWLCNQ------------------------------PGVNMEILNYAFKTPYYVACERHDA 139 (154)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhC------------------------------CCCCCccccCCCCCHHHHHHHcCCH
Confidence 999999999999999888888763 2447788889999999999999999
Q ss_pred HHHHHHHhCCCCCC
Q 002728 686 EIVKFLIDQGSDID 699 (887)
Q Consensus 686 ~~v~~Ll~~Gadv~ 699 (887)
+++++|+++||+++
T Consensus 140 ~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 140 KMMNILRAKGAQCK 153 (154)
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999999875
No 64
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=184.04 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=111.1
Q ss_pred CCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhH
Q 002728 569 NELDNNGRTA-LHIAASRGHEHCVVLLLEYGADLNIRD----SEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFA 643 (887)
Q Consensus 569 n~~d~~G~Tp-Lh~Aa~~g~~~~v~~Ll~~gad~n~~d----~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~ 643 (887)
...|.+|+|+ ||.|+..|+.+++++|+++|||+|.++ ..|.||||+|+..++.+++++|+++||
T Consensus 26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA----------- 94 (300)
T PHA02884 26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA----------- 94 (300)
T ss_pred hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------
Confidence 3567888875 556667799999999999999999974 589999999999999988888887766
Q ss_pred hHHHHhCCHHHHHHHHHcCCCCccC-CCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHH
Q 002728 644 CTAIEQNDLLLLEKIVHYGGDVTQL-TSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQI 722 (887)
Q Consensus 644 ~~a~~~~~~~~~~~Ll~~g~~~~~~-d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~ 722 (887)
|+|.+ +..|.||||.|+..|+.+++++|+++||+++.+|..|+||+|+|+..++.+++.
T Consensus 95 --------------------DVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~ 154 (300)
T PHA02884 95 --------------------DVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAF 154 (300)
T ss_pred --------------------CcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHH
Confidence 66765 457999999999999999999999999999999999999999999999988887
Q ss_pred HHhc
Q 002728 723 LLQM 726 (887)
Q Consensus 723 lL~~ 726 (887)
++..
T Consensus 155 ~~~~ 158 (300)
T PHA02884 155 MICD 158 (300)
T ss_pred HhcC
Confidence 7753
No 65
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.79 E-value=3.1e-19 Score=197.07 Aligned_cols=193 Identities=22% Similarity=0.152 Sum_probs=173.5
Q ss_pred cCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
..+.++-|+||.|+.+|+.++++.|++..+-++..|..|.+|||+||.+|+.++++.|+.++..+|..+.+|.||||.|+
T Consensus 44 ~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa 123 (854)
T KOG0507|consen 44 LQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA 123 (854)
T ss_pred ccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHcCCC--------CccCCCCCCcHhHHHHHcCCHH
Q 002728 617 LGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGD--------VTQLTSNGTTPLHVAISEGNIE 686 (887)
Q Consensus 617 ~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~g~~--------~~~~d~~g~TpLh~Aa~~g~~~ 686 (887)
++||.+++.+|+++|++....+ .++.+-+|++-|...+++.|+....+ -..++-.+.+|||.|+.+||.+
T Consensus 124 qhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~ 203 (854)
T KOG0507|consen 124 QHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVE 203 (854)
T ss_pred hhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHH
Confidence 9999999999999999876655 44666789999999999999876322 2234568899999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCC
Q 002728 687 IVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 687 ~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~ 730 (887)
|++.|+++|.|+|.....| |+||.|+.+|..+++.+|++.+..
T Consensus 204 ~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin 246 (854)
T KOG0507|consen 204 CMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGIN 246 (854)
T ss_pred HHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccc
Confidence 9999999999999987666 999999999999999999877643
No 66
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=186.10 Aligned_cols=264 Identities=21% Similarity=0.276 Sum_probs=184.1
Q ss_pred cccceEECCCCchHHHHHHHHHHHHHHHHHhhhheee--cccCCCCCcchhhHHHHHHHHHHHHhheeEEEEeCCceEEE
Q 002728 65 TLRRFIISPFEPRYRLWETFLVFLVFYTAWACPFEFG--FLNQPSRPLAITDNVVNAIFAIDIILTFFLAYLDKATHLLV 142 (887)
Q Consensus 65 ~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~--f~~~~~~~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv 142 (887)
+.+.++-.|.+.-...+.++++++++.+++...+..- +.......++++++++.+||.+++++|.+.|-..-.
T Consensus 80 ~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~r----- 154 (654)
T KOG1419|consen 80 KVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCR----- 154 (654)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----
Confidence 4456788999987788888877777777766655431 111234668899999999999999999998733322
Q ss_pred eChhHHHHHHhhhh-hhhhhhhccchhh-------hhhhccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 002728 143 DDPKKIAWRYAKTW-LTFDVISTIPSEA-------GRKFLPSALQAYGYFNMLRLWRLRRVSRLFARLEKDRNYSYIRVR 214 (887)
Q Consensus 143 ~d~~~I~~~Yl~~~-f~~Dlis~lP~~~-------~~~~~~~~~~~~~~~~llrl~rl~r~~~~~~~l~~~~~~~~~~~~ 214 (887)
+--+.-+.+|.+.. .++|++.++-... ..++..++++.++++.+||++|+-|-...++.|.+ ..+....
T Consensus 155 YrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLGS---vV~aH~~ 231 (654)
T KOG1419|consen 155 YRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLGS---VVYAHSK 231 (654)
T ss_pred cccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhhh---hhhhhHH
Confidence 01112233677776 4478775443321 22345567888899999999998887777766643 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccccccccCCcCCchhhHHH
Q 002728 215 YSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFD 294 (887)
Q Consensus 215 ~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~ 294 (887)
-.....++-|++.+++.++.|+++.....+. ..+-+..|.+|+||+++|+|||||||.+|+|+.+++++
T Consensus 232 ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~-----------~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~la 300 (654)
T KOG1419|consen 232 ELITTWYIGFLVLIFSSFLVYLAEKDAQGEG-----------TNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLA 300 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccc-----------ccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHH
Confidence 4455667777777788888888765322211 23456789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 002728 295 IFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHL 354 (887)
Q Consensus 295 i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~ 354 (887)
.++.++|+.+||..-|.+++=+.-.- +++.|+ ++|-++++.-..|.+-.-+||
T Consensus 301 a~fsligiSFFALPAGILGSGfALKV--Qeq~RQ-----KHf~rrr~pAA~LIQc~WR~y 353 (654)
T KOG1419|consen 301 ACFSLIGISFFALPAGILGSGFALKV--QEQHRQ-----KHFNRRRNPAASLIQCAWRYY 353 (654)
T ss_pred HHHHHHHHHHHhcccccccchhhhhh--HHHHHH-----HHHHhhcchHHHHHHHHHHHH
Confidence 99999999999999999987553321 112222 345566666667776665555
No 67
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.78 E-value=5.8e-19 Score=167.17 Aligned_cols=188 Identities=22% Similarity=0.166 Sum_probs=169.0
Q ss_pred HHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHH
Q 002728 546 LSFAAVRGDGLLLHQLLRRGSD-PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVV 624 (887)
Q Consensus 546 l~~Aa~~g~~~~l~~Ll~~g~~-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v 624 (887)
+-.|...|+.++......-.++ ++.+|.+|+.++|.|+-.|+.+.+..++.+|+..|..+--+++|+.+++...|.+.+
T Consensus 66 ~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~ 145 (296)
T KOG0502|consen 66 LTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVV 145 (296)
T ss_pred cchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHH
Confidence 4466777888888777765555 566889999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 002728 625 RILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIH 704 (887)
Q Consensus 625 ~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~ 704 (887)
.++.++..+-....+.+++++|+..|++.++++|++.|+|++...+...|||.+|+..|..++|++||+.+.|+|.-|-+
T Consensus 146 ~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN 225 (296)
T KOG0502|consen 146 DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN 225 (296)
T ss_pred HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC
Confidence 88887765544445668889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhcCCHHHHHHHhcCCCCCCC
Q 002728 705 GWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 705 g~Tpl~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
|.|||-+|++.||.+|++.|+..|++...
T Consensus 226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~ 254 (296)
T KOG0502|consen 226 GGTPLLYAVRGNHVKCVESLLNSGADVTQ 254 (296)
T ss_pred CCceeeeeecCChHHHHHHHHhcCCCccc
Confidence 99999999999999999999999987643
No 68
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.76 E-value=1.8e-18 Score=169.94 Aligned_cols=150 Identities=28% Similarity=0.345 Sum_probs=116.9
Q ss_pred HHhCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 002728 550 AVRGDGLLLHQLLR-RGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628 (887)
Q Consensus 550 a~~g~~~~l~~Ll~-~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll 628 (887)
|..||.-.|+..|+ ..-|.|..|..|.+|||+||..||..+|+.|+..|+.+|..+....||||+|+.+||.++|..|+
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll 87 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL 87 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence 44455444444443 34567788888889999999999999999999999999988888889999998888888887777
Q ss_pred HCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Q 002728 629 ENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTP 708 (887)
Q Consensus 629 ~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tp 708 (887)
+..+ |+|+.+.+|+||||+||-.|...+++-|+..||.++..|++|.||
T Consensus 88 ~~ka-------------------------------dvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tp 136 (448)
T KOG0195|consen 88 SRKA-------------------------------DVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP 136 (448)
T ss_pred HHhc-------------------------------ccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence 6654 777888899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHhcCCCC
Q 002728 709 RALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 709 l~~A~~~g~~~i~~lL~~~~~~ 730 (887)
++.|.-.-...+.++-.+++..
T Consensus 137 ldkakp~l~~~l~e~aek~gq~ 158 (448)
T KOG0195|consen 137 LDKAKPMLKNTLLEIAEKHGQS 158 (448)
T ss_pred hhhhchHHHHHHHHHHHHhCCC
Confidence 9887544444444444555543
No 69
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.75 E-value=4.4e-18 Score=172.91 Aligned_cols=157 Identities=22% Similarity=0.281 Sum_probs=140.6
Q ss_pred cCCCCcchHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHH-----cCCHHHHHHHHhCCCCCCCCC-CCCC
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRG-SDPNELDNNGRTALHIAAS-----RGHEHCVVLLLEYGADLNIRD-SEGS 609 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g-~~~n~~d~~G~TpLh~Aa~-----~g~~~~v~~Ll~~gad~n~~d-~~G~ 609 (887)
-.+.+|+|+||+|+.++|.++|+.||+.| +++|..++-|+||.++||. ..+.++|.-|.+.| |+|++- ..|.
T Consensus 263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQ 341 (452)
T KOG0514|consen 263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQ 341 (452)
T ss_pred hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcc
Confidence 46788999999999999999999999987 7899999999999999886 34678888888876 788875 4799
Q ss_pred cHHHHHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhCCHHHHHHHHHc-CCCCccCCCCCCcHhHHHHHcCCHH
Q 002728 610 VPLWEAMLGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHY-GGDVTQLTSNGTTPLHVAISEGNIE 686 (887)
Q Consensus 610 tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~~~~~~~~Ll~~-g~~~~~~d~~g~TpLh~Aa~~g~~~ 686 (887)
|+||+|+.+|..++|+.|+..||++|..| +.+.++-|++.|+.+++++||.. ++|....|.+|.|||.+|-..||.|
T Consensus 342 TALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e 421 (452)
T KOG0514|consen 342 TALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE 421 (452)
T ss_pred hhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH
Confidence 99999999999999999999999999865 45777889999999999999965 7899999999999999999999999
Q ss_pred HHHHHHhC
Q 002728 687 IVKFLIDQ 694 (887)
Q Consensus 687 ~v~~Ll~~ 694 (887)
+.-+|..+
T Consensus 422 Ia~mlYa~ 429 (452)
T KOG0514|consen 422 IAVMLYAH 429 (452)
T ss_pred HHHHHHHH
Confidence 99888753
No 70
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.74 E-value=9.1e-18 Score=153.36 Aligned_cols=118 Identities=31% Similarity=0.335 Sum_probs=105.2
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHH
Q 002728 578 ALHIAASRGHEHCVVLLLEYGAD-LNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLE 656 (887)
Q Consensus 578 pLh~Aa~~g~~~~v~~Ll~~gad-~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~ 656 (887)
-+.+|+..+....|+.||+..|+ +|.+|.+|.||||.|+.+||.++++.|+..||
T Consensus 66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA------------------------ 121 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA------------------------ 121 (228)
T ss_pred HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccC------------------------
Confidence 46789999999999999999887 99999999999999999999888887776655
Q ss_pred HHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCH-HHHHHHhc
Q 002728 657 KIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQE-DIQILLQM 726 (887)
Q Consensus 657 ~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~-~i~~lL~~ 726 (887)
+++++...||||||-||..++.+|+..||++|||||+.....+||||+|+...+. ..+.+|+.
T Consensus 122 -------n~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 122 -------NKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred -------CcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence 7788888999999999999999999999999999999999999999999987764 45566653
No 71
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.72 E-value=1e-17 Score=164.68 Aligned_cols=127 Identities=31% Similarity=0.360 Sum_probs=114.3
Q ss_pred cccccchhhHHHhhcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002728 523 MMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLN 602 (887)
Q Consensus 523 ~~e~l~~d~e~~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n 602 (887)
.+...+.+.+..+..++..+-+|||+||+.|+..+++.||.+|+-+|.++....||||+||.+||.++|+.|++..+|+|
T Consensus 15 qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn 94 (448)
T KOG0195|consen 15 QVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN 94 (448)
T ss_pred EEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc
Confidence 34455667777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHH
Q 002728 603 IRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAI 680 (887)
Q Consensus 603 ~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa 680 (887)
+.+..|+||||+||..|...+++-|+..|+ .++.++++|.|||..|-
T Consensus 95 avnehgntplhyacfwgydqiaedli~~ga-------------------------------~v~icnk~g~tpldkak 141 (448)
T KOG0195|consen 95 AVNEHGNTPLHYACFWGYDQIAEDLISCGA-------------------------------AVNICNKKGMTPLDKAK 141 (448)
T ss_pred hhhccCCCchhhhhhhcHHHHHHHHHhccc-------------------------------eeeecccCCCCchhhhc
Confidence 999999999999999999988888877766 56677788888888773
No 72
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.70 E-value=9.4e-17 Score=180.50 Aligned_cols=185 Identities=24% Similarity=0.258 Sum_probs=157.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHcC---------CCCCCCCCCCCcHHHHHHH---cCCHHHHHHHHhCCCC-CCC----CCC
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRG---------SDPNELDNNGRTALHIAAS---RGHEHCVVLLLEYGAD-LNI----RDS 606 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g---------~~~n~~d~~G~TpLh~Aa~---~g~~~~v~~Ll~~gad-~n~----~d~ 606 (887)
-++..|...|..+.+..+++.+ .+++.+-..|.|.||.|.- .++.++++.|++.-.. +|. -..
T Consensus 103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY 182 (782)
T KOG3676|consen 103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY 182 (782)
T ss_pred hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence 4677888888888888888765 5677777889999999876 5567899999986322 222 134
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCC-------------------------chhHhHHHHhCCHHHHHHHHHc
Q 002728 607 EGSVPLWEAMLGKHEPVVRILAENGALISSSDV-------------------------GHFACTAIEQNDLLLLEKIVHY 661 (887)
Q Consensus 607 ~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------------------~~~~~~a~~~~~~~~~~~Ll~~ 661 (887)
.|.||||.|+.+.+.++|++|++.|||++.... ..++..|+-.++.+++++|+++
T Consensus 183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~ 262 (782)
T KOG3676|consen 183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH 262 (782)
T ss_pred cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence 699999999999999999999999998764321 2466789999999999999999
Q ss_pred CCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHhcCCHHHHHHHhcCC
Q 002728 662 GGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSD--IDKPDIHGWTPRALADHQGQEDIQILLQMKP 728 (887)
Q Consensus 662 g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad--v~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~ 728 (887)
|+|+|++|..|+|.||..+..-..+|-.++|++||+ ...+|..|.|||.+|++.|+.++.+.+++.+
T Consensus 263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~ 331 (782)
T KOG3676|consen 263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR 331 (782)
T ss_pred CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999 8899999999999999999999999888764
No 73
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.68 E-value=2.2e-16 Score=137.78 Aligned_cols=86 Identities=42% Similarity=0.551 Sum_probs=46.4
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHH
Q 002728 546 LSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVR 625 (887)
Q Consensus 546 l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~ 625 (887)
||.||..|+.++++.|++.+.+++. |+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 4555555555555555555555443 555555555555555555555555555555555555555555555555555
Q ss_pred HHHHCCCCcC
Q 002728 626 ILAENGALIS 635 (887)
Q Consensus 626 ~Ll~~g~~~~ 635 (887)
+|+++|++++
T Consensus 77 ~Ll~~g~~~~ 86 (89)
T PF12796_consen 77 LLLEHGADVN 86 (89)
T ss_dssp HHHHTTT-TT
T ss_pred HHHHcCCCCC
Confidence 5555554443
No 74
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.68 E-value=3.1e-17 Score=185.45 Aligned_cols=191 Identities=25% Similarity=0.296 Sum_probs=155.9
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCcHHHHHH
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIR-DSEGSVPLWEAM 616 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~-d~~G~tpL~~A~ 616 (887)
.+.+..|+|-.||..|+.++++.|+.+|+++..+|+.|.+||.+|+-.||..+|+.|+++.+++..+ |+.+.|+|.+||
T Consensus 753 Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac 832 (2131)
T KOG4369|consen 753 TEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC 832 (2131)
T ss_pred cCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence 3456779999999999999999999999999999999999999999999999999999999998774 778899999999
Q ss_pred hcCCHHHHHHHHHCCCCcCCCCCc--hhHhHHHHhCCHHHHHHHHHcCCCCccCC--CCCCcHhHHHHHcCCHHHHHHHH
Q 002728 617 LGKHEPVVRILAENGALISSSDVG--HFACTAIEQNDLLLLEKIVHYGGDVTQLT--SNGTTPLHVAISEGNIEIVKFLI 692 (887)
Q Consensus 617 ~~~~~~~v~~Ll~~g~~~~~~~~~--~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d--~~g~TpLh~Aa~~g~~~~v~~Ll 692 (887)
..|..++|++|+..|++-...+.. +++.+|...|..++++.|+.+|+.+|.+. +.|-.||++|+++||.+.++.||
T Consensus 833 sggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll 912 (2131)
T KOG4369|consen 833 SGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLL 912 (2131)
T ss_pred CCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHh
Confidence 999999999999998865554433 55667777788888888888888887764 46778888888888888888888
Q ss_pred hCCCCCCCC-CCCCCCHHHHHHhcCCHHHHHHHhcCC
Q 002728 693 DQGSDIDKP-DIHGWTPRALADHQGQEDIQILLQMKP 728 (887)
Q Consensus 693 ~~Gadv~~~-d~~g~Tpl~~A~~~g~~~i~~lL~~~~ 728 (887)
+.|.|+|+. ..+.+|+|.+|+..|..+++.+|+.+.
T Consensus 913 ~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~ 949 (2131)
T KOG4369|consen 913 QPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ 949 (2131)
T ss_pred cccchhccccccccccceeeccccCcchHHHHHHHHh
Confidence 888777764 334567777777777777777766443
No 75
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.68 E-value=1.1e-15 Score=142.15 Aligned_cols=125 Identities=44% Similarity=0.715 Sum_probs=110.3
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHh
Q 002728 570 ELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQ 649 (887)
Q Consensus 570 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~ 649 (887)
..|.+|.||||+|+..|+.++++.|+++|++.+.++..|.||||.|+..++.+++++|++.|+
T Consensus 2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~----------------- 64 (126)
T cd00204 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA----------------- 64 (126)
T ss_pred CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-----------------
Confidence 356789999999999999999999999999988999999999999999988888888887765
Q ss_pred CCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHh
Q 002728 650 NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725 (887)
Q Consensus 650 ~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~ 725 (887)
+++..+..|.||+|.|+..++.+++++|+..|.+++..|..|.||+++|...++.+++++|.
T Consensus 65 --------------~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 65 --------------DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred --------------CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 45566678889999999999999999999999999999999999999999999999888873
No 76
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=2e-16 Score=169.88 Aligned_cols=155 Identities=24% Similarity=0.337 Sum_probs=133.8
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCc--hhHhHHHHhCCHHHH
Q 002728 578 ALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVG--HFACTAIEQNDLLLL 655 (887)
Q Consensus 578 pLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--~~~~~a~~~~~~~~~ 655 (887)
.+.-||+.|..+-|+.|+..|+++|..+.+|.|+||.||.-.+.+||++|+++|++++..+.. +++|.|+.+|++.++
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~ 122 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV 122 (527)
T ss_pred HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence 355688899999999999999999999999999999999999999999999999999988754 778999999999999
Q ss_pred HHHHHcCCCCccCCCCCCcHhHHHHHcCCH--------------------------HHHHHHHhCCCCCCCCCCCCCCHH
Q 002728 656 EKIVHYGGDVTQLTSNGTTPLHVAISEGNI--------------------------EIVKFLIDQGSDIDKPDIHGWTPR 709 (887)
Q Consensus 656 ~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~--------------------------~~v~~Ll~~Gadv~~~d~~g~Tpl 709 (887)
++|+.+|+++-..+.+|..|+..|...-.. +=++..+..|++.+..+..|-|+|
T Consensus 123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l 202 (527)
T KOG0505|consen 123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL 202 (527)
T ss_pred HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence 999999999998888888887664321111 113444558999999999999999
Q ss_pred HHHHhcCCHHHHHHHhcCCCCCC
Q 002728 710 ALADHQGQEDIQILLQMKPEPKK 732 (887)
Q Consensus 710 ~~A~~~g~~~i~~lL~~~~~~~~ 732 (887)
|+|+..|..++.++|+.++....
T Consensus 203 HvAaa~Gy~e~~~lLl~ag~~~~ 225 (527)
T KOG0505|consen 203 HVAAANGYTEVAALLLQAGYSVN 225 (527)
T ss_pred HHHHhhhHHHHHHHHHHhccCcc
Confidence 99999999999999999987654
No 77
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.67 E-value=3.4e-16 Score=136.57 Aligned_cols=87 Identities=34% Similarity=0.452 Sum_probs=78.7
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCC--CCchhHhHHHHhCCHHHHH
Q 002728 579 LHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSS--DVGHFACTAIEQNDLLLLE 656 (887)
Q Consensus 579 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~~~~~a~~~~~~~~~~ 656 (887)
||+||+.|+.++++.|++.+++++. |+||||+|+..|+.+++++|+++|++++.. .+.++++.|+..|+.++++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 76 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK 76 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence 8999999999999999999998887 899999999999999999999999999876 4568899999999999999
Q ss_pred HHHHcCCCCccCC
Q 002728 657 KIVHYGGDVTQLT 669 (887)
Q Consensus 657 ~Ll~~g~~~~~~d 669 (887)
+|+++|+++|.+|
T Consensus 77 ~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 77 LLLEHGADVNIRN 89 (89)
T ss_dssp HHHHTTT-TTSS-
T ss_pred HHHHcCCCCCCcC
Confidence 9999999999875
No 78
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.67 E-value=2.9e-16 Score=191.39 Aligned_cols=175 Identities=25% Similarity=0.214 Sum_probs=133.5
Q ss_pred CCCcchHHHHHHHh---CCHHHHHHHHHcCCC------CCC----CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Q 002728 539 RMDLPLSLSFAAVR---GDGLLLHQLLRRGSD------PNE----LDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRD 605 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~---g~~~~l~~Ll~~g~~------~n~----~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d 605 (887)
+..+.|+||.|+.. +...+++.+++.+.+ ++. .+..|.||||+||.+|+.++|++|+++|||+|.++
T Consensus 79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~ 158 (743)
T TIGR00870 79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA 158 (743)
T ss_pred CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence 56788999999872 222334444444422 111 23579999999999999999999999999999764
Q ss_pred --------------CCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCC--CchhHhHHHHhC---------CHHHHHHHHH
Q 002728 606 --------------SEGSVPLWEAMLGKHEPVVRILAENGALISSSD--VGHFACTAIEQN---------DLLLLEKIVH 660 (887)
Q Consensus 606 --------------~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~--~~~~~~~a~~~~---------~~~~~~~Ll~ 660 (887)
..|.||||.|+..|+.+++++|+++|++++..+ +.+++|.|+..+ ...+.+.+++
T Consensus 159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ 238 (743)
T TIGR00870 159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS 238 (743)
T ss_pred CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 258999999999999999999999999888766 457778888776 2345566666
Q ss_pred cCCCC-------ccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 002728 661 YGGDV-------TQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALAD 713 (887)
Q Consensus 661 ~g~~~-------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~ 713 (887)
.+++. +..|.+|.||||+|+..|+.+++++|++.+++......+.+.|.+++.
T Consensus 239 ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk~~a~~~~~~~~~~ 298 (743)
T TIGR00870 239 LLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSL 298 (743)
T ss_pred HHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcceeeccCcchHhHhh
Confidence 55554 667899999999999999999999999977665555555666665554
No 79
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.64 E-value=1.3e-16 Score=180.44 Aligned_cols=196 Identities=24% Similarity=0.266 Sum_probs=181.6
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNE-LDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
++..+-+||..|+..|+..+|+.|+++.++++. .|+.+.|+|-+||..|+.++|++||.+|++-..++....|||.+|.
T Consensus 786 rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~ 865 (2131)
T KOG4369|consen 786 RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLAR 865 (2131)
T ss_pred cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhc
Confidence 556677999999999999999999999999876 5899999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHCCCCcCCCCCc----hhHhHHHHhCCHHHHHHHHHcCCCCccCCC-CCCcHhHHHHHcCCHHHHHHH
Q 002728 617 LGKHEPVVRILAENGALISSSDVG----HFACTAIEQNDLLLLEKIVHYGGDVTQLTS-NGTTPLHVAISEGNIEIVKFL 691 (887)
Q Consensus 617 ~~~~~~~v~~Ll~~g~~~~~~~~~----~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~L 691 (887)
..|..++++.|+..|+.++...+. .++++|..+|+-...+.|++.|.|+|..-. +-+|+|-+|+-.|+.++|.+|
T Consensus 866 Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lL 945 (2131)
T KOG4369|consen 866 SGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLL 945 (2131)
T ss_pred CcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHH
Confidence 999999999999999999876643 678899999999999999999999998654 778999999999999999999
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCCC
Q 002728 692 IDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 692 l~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
|.+.|++..+-..|.|||.-++..|..++-++|+.++++...
T Consensus 946 La~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~na 987 (2131)
T KOG4369|consen 946 LAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNA 987 (2131)
T ss_pred HHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccccc
Confidence 999999999999999999999999999999999999987654
No 80
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.7e-17 Score=164.71 Aligned_cols=181 Identities=17% Similarity=0.258 Sum_probs=113.0
Q ss_pred CCcchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhh-hhhhhhhhccchhhhhhhc--cc--------
Q 002728 108 RPLAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKT-WLTFDVISTIPSEAGRKFL--PS-------- 176 (887)
Q Consensus 108 ~~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~-~f~~Dlis~lP~~~~~~~~--~~-------- 176 (887)
.++++++.+|.++|.++.++||+.+= .|. -+.++ --++|++|++|+.+..... ..
T Consensus 253 dPFFiVEt~CIiWFtfEllvRf~aCP-----------sK~---~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gq 318 (507)
T KOG1545|consen 253 DPFFIVETLCIIWFTFELLVRFFACP-----------SKA---TFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQ 318 (507)
T ss_pred CchHhHHHHHHHHHhHHHHHHHhcCc-----------cHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccch
Confidence 45788999999999999999999881 111 23333 3689999999987532110 00
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHH------HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccc
Q 002728 177 ALQAYGYFNMLRLWRLRRVSRLFAR------LEKDRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQ 250 (887)
Q Consensus 177 ~~~~~~~~~llrl~rl~r~~~~~~~------l~~~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~ 250 (887)
.-.++.++|++||.|++|++++-.. |-+..+.+ ...+..|++.+++-+.+++...|+-....
T Consensus 319 qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aS--mrElgLLIFFlfIgviLFsSavYFAEade---------- 386 (507)
T KOG1545|consen 319 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRAS--MRELGLLIFFLFIGVILFSSAVYFAEADE---------- 386 (507)
T ss_pred hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhceeeeeecCC----------
Confidence 1123445555555555555554322 22222221 12222233333333333444333332211
Q ss_pred ccCCccCCchHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002728 251 TLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGT 320 (887)
Q Consensus 251 ~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~ 320 (887)
..+.+.....||||+++|||||||||..|.|..++++..++.+.|++-.|+.+..+.+-+...+
T Consensus 387 ------~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFY 450 (507)
T KOG1545|consen 387 ------PESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 450 (507)
T ss_pred ------CccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccccee
Confidence 1233344556999999999999999999999999999999999999999988876655443333
No 81
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.59 E-value=2e-14 Score=133.69 Aligned_cols=122 Identities=44% Similarity=0.651 Sum_probs=113.6
Q ss_pred CCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~ 619 (887)
.++.|+||.|+..|+.++++.|++.|++.+..|..|.||||.|+..+..++++.|+++|++++..+..|.||+|+|+..+
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~ 84 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG 84 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHH
Q 002728 620 HEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLI 692 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll 692 (887)
+.+++++|++++. +++..|..|.||||.|+..++.+++++|+
T Consensus 85 ~~~~~~~L~~~~~-------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 85 NLDVVKLLLKHGA-------------------------------DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred cHHHHHHHHHcCC-------------------------------CCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 9999988888764 56677788999999999999999999885
No 82
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.57 E-value=2.4e-14 Score=149.64 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=131.8
Q ss_pred HhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechh
Q 002728 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELG 467 (887)
Q Consensus 388 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~ 467 (887)
.++++.+++|.+++++.+.++....+.+.|++|+.|+.+|+.++.+|+|.+|.++++...+|++.++..+.+|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 35788999999999999999999999999999999999999999999999999999886677788899999999999999
Q ss_pred hhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCcccccchhhHHHhh
Q 002728 468 LLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLGDPMMEGISTDTEQKLA 536 (887)
Q Consensus 468 ~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~~~~e~l~~d~e~~la 536 (887)
++.+.|+.++++|.++|+++.++++.|.+++.++|.....+++.+.+++....+........+...+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla 154 (236)
T PRK09392 86 VVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLVKSLKNQKLRSSAERLA 154 (236)
T ss_pred HhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999888887776655444444444444433
No 83
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.54 E-value=3e-14 Score=116.51 Aligned_cols=82 Identities=30% Similarity=0.469 Sum_probs=43.9
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHH
Q 002728 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVV 624 (887)
Q Consensus 545 ~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v 624 (887)
.+.++.++|..+.|+.....|.++|.. ..|+||||+||-.|+.+++++|+..||+++.+|+.|-|||..|+-.||.+||
T Consensus 5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV 83 (117)
T KOG4214|consen 5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV 83 (117)
T ss_pred hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence 345566666666666666666555544 2566666666666666666666555555555444444443333333333333
Q ss_pred HHH
Q 002728 625 RIL 627 (887)
Q Consensus 625 ~~L 627 (887)
++|
T Consensus 84 klL 86 (117)
T KOG4214|consen 84 KLL 86 (117)
T ss_pred HHH
Confidence 333
No 84
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=1.1e-13 Score=156.05 Aligned_cols=163 Identities=26% Similarity=0.296 Sum_probs=138.0
Q ss_pred HHHhhcCCCCcchHHHHHHHh---CCHHHHHHHHHcCCC-CCC----CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 002728 532 EQKLARGRMDLPLSLSFAAVR---GDGLLLHQLLRRGSD-PNE----LDNNGRTALHIAASRGHEHCVVLLLEYGADLNI 603 (887)
Q Consensus 532 e~~la~~~~~~~~~l~~Aa~~---g~~~~l~~Ll~~g~~-~n~----~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~ 603 (887)
...+.++...|.|.||.|..+ +..++++.|++.-.. +|. -...|.||||+|+.+.+.++|++|++.|||||+
T Consensus 133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a 212 (782)
T KOG3676|consen 133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA 212 (782)
T ss_pred hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh
Confidence 344455567788999999984 455889999986443 222 236799999999999999999999999999987
Q ss_pred C---------CC--------------CCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCC--chhHhHHHHhCCHHHHHHH
Q 002728 604 R---------DS--------------EGSVPLWEAMLGKHEPVVRILAENGALISSSDV--GHFACTAIEQNDLLLLEKI 658 (887)
Q Consensus 604 ~---------d~--------------~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~a~~~~~~~~~~~L 658 (887)
+ |. .|..||-.|+.-++.+++++|+++|||++..|. ++.+|..+..-..++-..+
T Consensus 213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~ 292 (782)
T KOG3676|consen 213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLA 292 (782)
T ss_pred HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHH
Confidence 4 11 377899999999999999999999999998874 4677888888889999999
Q ss_pred HHcCCC--CccCCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 002728 659 VHYGGD--VTQLTSNGTTPLHVAISEGNIEIVKFLIDQ 694 (887)
Q Consensus 659 l~~g~~--~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 694 (887)
+++|++ ...+|++|-|||.+||..|+.++.+.+++.
T Consensus 293 L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 293 LELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER 330 (782)
T ss_pred HhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence 999999 888899999999999999999999999997
No 85
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.53 E-value=2.2e-14 Score=145.61 Aligned_cols=188 Identities=25% Similarity=0.354 Sum_probs=128.8
Q ss_pred hhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhh-hhhhhhhccchhhhhhhccchh----hHhhHHHH
Q 002728 112 ITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTW-LTFDVISTIPSEAGRKFLPSAL----QAYGYFNM 186 (887)
Q Consensus 112 ~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~-f~~Dlis~lP~~~~~~~~~~~~----~~~~~~~l 186 (887)
++|.+++++|.+|+++++++.... +++|++++ +++|+++++|............ ...+.+++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence 468999999999999999977332 66899875 7799999999865433222111 13445555
Q ss_pred HHHHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHH
Q 002728 187 LRLWRLRRVSRLFARLEKDR-NYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYV 265 (887)
Q Consensus 187 lrl~rl~r~~~~~~~l~~~~-~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~ 265 (887)
+|++|+.|+.+.++.+.... .......++.+++..++++.|+.||+++.+..........+......+....+.+..|.
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 147 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFG 147 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccc
Confidence 55555555555444333321 12233456778888899999999999998876543322211122223444556778899
Q ss_pred HHHHHHhhhccccccccCCcC-----CchhhHHH-HHHHHHHHHHHHHHHHHH
Q 002728 266 TSIYWSIATLTTTGYGDIHPV-----NTRERIFD-IFFMFFNLGLTSYLLGNM 312 (887)
Q Consensus 266 ~slyw~i~tltTvGYGdi~p~-----~~~e~if~-i~~~~~g~~l~a~~ig~~ 312 (887)
.|+||++.++||.||||..|. +..+.++. ++..+.+++++++++|.|
T Consensus 148 ~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 148 ESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999999999999999999997 88999999 666777779999999976
No 86
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.53 E-value=8.4e-14 Score=144.33 Aligned_cols=133 Identities=35% Similarity=0.474 Sum_probs=119.2
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC-----HHHHHHHHHCCCCcCCCCCchh
Q 002728 568 PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH-----EPVVRILAENGALISSSDVGHF 642 (887)
Q Consensus 568 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~~~ 642 (887)
.+..+..+.+++|.|+..+..++++.++..|++++.+|.+|.||||+|+..++ .+++++|++.|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~--------- 136 (235)
T COG0666 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--------- 136 (235)
T ss_pred cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC---------
Confidence 34567789999999999999999999999999999999999999999999999 6666666666552
Q ss_pred HhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHH
Q 002728 643 ACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQI 722 (887)
Q Consensus 643 ~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~ 722 (887)
+.+.+.+|..|+||||+|+..|+.+++++|++.|++++..|..|.|+++.|+..++.++.+
T Consensus 137 -------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 197 (235)
T COG0666 137 -------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVK 197 (235)
T ss_pred -------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHH
Confidence 1155666899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC
Q 002728 723 LLQMKP 728 (887)
Q Consensus 723 lL~~~~ 728 (887)
.+...+
T Consensus 198 ~l~~~~ 203 (235)
T COG0666 198 LLLDKG 203 (235)
T ss_pred HHHhcC
Confidence 998876
No 87
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.53 E-value=1.3e-14 Score=154.62 Aligned_cols=234 Identities=20% Similarity=0.369 Sum_probs=164.3
Q ss_pred hhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhhhhhhhhhccc-----hhhhhhhccchhhHhhHHHH
Q 002728 112 ITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTWLTFDVISTIP-----SEAGRKFLPSALQAYGYFNM 186 (887)
Q Consensus 112 ~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~f~~Dlis~lP-----~~~~~~~~~~~~~~~~~~~l 186 (887)
-+|...++||++-+++||..| +. |-||++.+-|.+- -.++.++....|.+++++|.
T Consensus 166 qidlafnifflvyffirfiaa-----sd--------------klwf~lemys~vdfftippsfvsiyl~r~wlglrflra 226 (1103)
T KOG1420|consen 166 QIDLAFNIFFLVYFFIRFIAA-----SD--------------KLWFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRA 226 (1103)
T ss_pred HhhhHhhHHHHHHHHHHHhhc-----cc--------------ceeeeeehhhheeeeecCchheEEEeccchHHHHHHHH
Confidence 578999999999999999988 10 1277766665443 33445667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHH
Q 002728 187 LRLWRLRRVSRLFARLEKDRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVT 266 (887)
Q Consensus 187 lrl~rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~ 266 (887)
|||..+.-+.++++.|+.... +|+..++.+++-+....|.+.++++ +.++.|-+.. ...-..|..
T Consensus 227 lrlmtvpdilqylnilktsss-----irl~qlvsifisvwltaag~ihlle----nsgdp~~~f~------n~hrltyw~ 291 (1103)
T KOG1420|consen 227 LRLMTVPDILQYLNILKTSSS-----IRLVQLVSIFISVWLTAAGFIHLLE----NSGDPWENFQ------NNHRLTYWE 291 (1103)
T ss_pred HHhccHHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHhhcceeehhh----cCCChhHhcc------Ccccchhhh
Confidence 988888888888887765433 5666666666666556666666665 4444454322 122346999
Q ss_pred HHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH-------------HHHH
Q 002728 267 SIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDT-------------IQAA 333 (887)
Q Consensus 267 slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~-------------~~~~ 333 (887)
|.|+-++||+||||||+...|..+++|.+|++++|+.+||--+..+..++.+.++.--+|+.. .+.+
T Consensus 292 cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkhivvcghityesv 371 (1103)
T KOG1420|consen 292 CVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKHIVVCGHITYESV 371 (1103)
T ss_pred eeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCeeEEEecceeHHHH
Confidence 999999999999999999999999999999999999999999999999998877665555432 3444
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHH-HHHHhccHHHHHHHHHHHHHhhhhhhhcccC
Q 002728 334 SSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQ-EIIESLPKAIQSSISHFLFYSLVDQVYLFRG 399 (887)
Q Consensus 334 ~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~-~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lf~~ 399 (887)
++|++ +|+ + .+.+.++-+ .+|...||+|.-| -+|++-..++.+|++
T Consensus 372 shflk-------------dfl---h-edrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 372 SHFLK-------------DFL---H-EDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred HHHHH-------------HHh---h-ccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 44432 121 2 222333322 4567777777543 355555666777765
No 88
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.50 E-value=6.8e-14 Score=114.49 Aligned_cols=74 Identities=32% Similarity=0.428 Sum_probs=67.7
Q ss_pred CCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLW 613 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~ 613 (887)
..+.+|||+||..|+.++++.|+..|++++..|++|-|||.-|+..||.+||++||+.|||-..+..+|.+.+.
T Consensus 32 ~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e 105 (117)
T KOG4214|consen 32 YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE 105 (117)
T ss_pred hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence 35779999999999999999999999999999999999999999999999999999999998888888876554
No 89
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.49 E-value=1.8e-13 Score=141.90 Aligned_cols=125 Identities=42% Similarity=0.597 Sum_probs=115.6
Q ss_pred CCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCCCCCcH
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGH-----EHCVVLLLEYGA---DLNIRDSEGSVP 611 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---d~n~~d~~G~tp 611 (887)
....++++.|+..++...++.++..|++++..|.+|.||||+|+..|+ .++++.|++.|+ +.+.+|..|.||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tp 150 (235)
T COG0666 71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTP 150 (235)
T ss_pred ccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCch
Confidence 346789999999999999999999999999999999999999999999 999999999999 677779999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHH
Q 002728 612 LWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFL 691 (887)
Q Consensus 612 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~L 691 (887)
||+|+..|+.+++++|++.|+ +++..+..|.||+|.|+..|+.++++.|
T Consensus 151 l~~A~~~~~~~~~~~ll~~~~-------------------------------~~~~~~~~g~t~l~~a~~~~~~~~~~~l 199 (235)
T COG0666 151 LHWAALNGDADIVELLLEAGA-------------------------------DPNSRNSYGVTALDPAAKNGRIELVKLL 199 (235)
T ss_pred hHHHHHcCchHHHHHHHhcCC-------------------------------CCcccccCCCcchhhhcccchHHHHHHH
Confidence 999999999999988888755 6666688999999999999999999999
Q ss_pred HhCC
Q 002728 692 IDQG 695 (887)
Q Consensus 692 l~~G 695 (887)
++.|
T Consensus 200 ~~~~ 203 (235)
T COG0666 200 LDKG 203 (235)
T ss_pred HhcC
Confidence 9976
No 90
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.46 E-value=8.7e-13 Score=135.44 Aligned_cols=126 Identities=21% Similarity=0.341 Sum_probs=114.2
Q ss_pred cCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhcCC-Cce
Q 002728 398 RGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLCYK-PQL 475 (887)
Q Consensus 398 ~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~~~-~~~ 475 (887)
+.+|++.+..+...++.+.|++|+.|+.+|+.++.+|+|.+|.++++. ..+|++.++..+.+|++||+.+++.+. ++.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~ 85 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS 85 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence 568999999999999999999999999999999999999999999987 456888999999999999999988764 678
Q ss_pred eEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCc
Q 002728 476 FTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLGDPM 523 (887)
Q Consensus 476 ~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~~~ 523 (887)
++++|.++|.++.+++++|.+++..+|+....+++.+.+++.......
T Consensus 86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~ 133 (211)
T PRK11753 86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKV 133 (211)
T ss_pred EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888888776654443
No 91
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.45 E-value=3.6e-13 Score=133.08 Aligned_cols=123 Identities=28% Similarity=0.311 Sum_probs=93.5
Q ss_pred hHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHH
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPV 623 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~ 623 (887)
.+|..|+..|+.+....||+.--++|..|..|.|||..|+.+|+.+.|++|++.|||+|..
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~------------------- 74 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDK------------------- 74 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcc-------------------
Confidence 5666777777777777777665556667777777777777777777777777777666632
Q ss_pred HHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 002728 624 VRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDI 703 (887)
Q Consensus 624 v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~ 703 (887)
++..++||||.||..|+.++.++|++.||.....|.
T Consensus 75 --------------------------------------------qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNs 110 (396)
T KOG1710|consen 75 --------------------------------------------QHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNS 110 (396)
T ss_pred --------------------------------------------cccccccHHHHHHHcCCchHHHHHHhccCccccccc
Confidence 223578999999999999999999999999888999
Q ss_pred CCCCHHHHHHhcCCHHHHHHHhcCCC
Q 002728 704 HGWTPRALADHQGQEDIQILLQMKPE 729 (887)
Q Consensus 704 ~g~Tpl~~A~~~g~~~i~~lL~~~~~ 729 (887)
-|+|+-..|+.-||.+++..+.++-.
T Consensus 111 vgrTAaqmAAFVG~H~CV~iINN~~t 136 (396)
T KOG1710|consen 111 VGRTAAQMAAFVGHHECVAIINNHIT 136 (396)
T ss_pred hhhhHHHHHHHhcchHHHHHHhcccc
Confidence 99999999999999998888866543
No 92
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.1e-13 Score=142.51 Aligned_cols=119 Identities=32% Similarity=0.447 Sum_probs=102.2
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHH
Q 002728 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVV 624 (887)
Q Consensus 545 ~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v 624 (887)
-|.-|+..|..++|+..+..--|+...+..|-||||-|++.||.+||++|++.|+|+|..|++||||||.|+..++..++
T Consensus 553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c 632 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC 632 (752)
T ss_pred HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence 35678999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHH--HHcCCHHHHHHHHh
Q 002728 625 RILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVA--ISEGNIEIVKFLID 693 (887)
Q Consensus 625 ~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~A--a~~g~~~~v~~Ll~ 693 (887)
+.|++.|+.+-... -.++.||...| ..+|..+|.++|..
T Consensus 633 kqLVe~GaavfAsT------------------------------lSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 633 KQLVESGAAVFAST------------------------------LSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred HHHHhccceEEeee------------------------------cccccchhhhcchhhhhHHHHHHHHHH
Confidence 99999998543221 13556666554 45677888888864
No 93
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.42 E-value=1.4e-13 Score=107.73 Aligned_cols=55 Identities=36% Similarity=0.578 Sum_probs=33.7
Q ss_pred HHHcC-CCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 002728 658 IVHYG-GDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALA 712 (887)
Q Consensus 658 Ll~~g-~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A 712 (887)
|+++| +++|.+|..|.||||+||..|+.+++++|++.|+|++.+|..|+||+|+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 56777 89999999999999999999999999999999999999999999999997
No 94
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.41 E-value=2.1e-13 Score=106.67 Aligned_cols=55 Identities=49% Similarity=0.700 Sum_probs=33.6
Q ss_pred HHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Q 002728 561 LLRRG-SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEA 615 (887)
Q Consensus 561 Ll~~g-~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A 615 (887)
||++| +++|..|..|.||||+||..|+.+++++|++.|+|++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 57778 88999999999999999999999999999999999999999999999987
No 95
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.40 E-value=1.2e-12 Score=155.92 Aligned_cols=104 Identities=37% Similarity=0.473 Sum_probs=78.4
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHH
Q 002728 578 ALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEK 657 (887)
Q Consensus 578 pLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~ 657 (887)
+||.||..|+.++++.|+++|+|+|.+|.+|+||||+|+.+|+.+++++|+++|+
T Consensus 85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga------------------------- 139 (664)
T PTZ00322 85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA------------------------- 139 (664)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC-------------------------
Confidence 4777777888888888888888888888888888888877777777777666554
Q ss_pred HHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhC-------CCCCCCCCCCCCCHHHHH
Q 002728 658 IVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQ-------GSDIDKPDIHGWTPRALA 712 (887)
Q Consensus 658 Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-------Gadv~~~d~~g~Tpl~~A 712 (887)
|+|.+|.+|+||||+|+..|+.+++++|+++ ||+++..+..|.+|+..+
T Consensus 140 ------dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~ 195 (664)
T PTZ00322 140 ------DPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED 195 (664)
T ss_pred ------CCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence 6666777788888888888888888888777 777777777777765544
No 96
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.38 E-value=1.8e-12 Score=154.27 Aligned_cols=87 Identities=40% Similarity=0.583 Sum_probs=85.2
Q ss_pred hHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHH
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPV 623 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~ 623 (887)
+.|+.||..|+.+.++.|++.|+++|..|.+|+||||+||..|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.++
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i 163 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV 163 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHC
Q 002728 624 VRILAEN 630 (887)
Q Consensus 624 v~~Ll~~ 630 (887)
+++|+++
T Consensus 164 v~~Ll~~ 170 (664)
T PTZ00322 164 VQLLSRH 170 (664)
T ss_pred HHHHHhC
Confidence 9999998
No 97
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=1.4e-12 Score=138.43 Aligned_cols=117 Identities=27% Similarity=0.303 Sum_probs=102.6
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHH
Q 002728 579 LHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKI 658 (887)
Q Consensus 579 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~L 658 (887)
|.-|+..|-.|+|+-.+..=-|+...|.+|-||||-|+..||.+||++|++.|+
T Consensus 554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ga-------------------------- 607 (752)
T KOG0515|consen 554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGA-------------------------- 607 (752)
T ss_pred HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCC--------------------------
Confidence 445889999999999999989999999999999999999999999888887655
Q ss_pred HHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHH--hcCCHHHHHHHhc
Q 002728 659 VHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPD-IHGWTPRALAD--HQGQEDIQILLQM 726 (887)
Q Consensus 659 l~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d-~~g~Tpl~~A~--~~g~~~i~~lL~~ 726 (887)
|||+.|.+||||||+||.++++.+++.|++.||-|.+.. .++.||.+-+. +.|...|.++|-.
T Consensus 608 -----nVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 608 -----NVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred -----cccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence 889999999999999999999999999999999887644 56889988665 3567889999853
No 98
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.36 E-value=3.4e-12 Score=126.28 Aligned_cols=118 Identities=24% Similarity=0.264 Sum_probs=98.4
Q ss_pred HHHHHHhhcCCCcccccchhhHHHhhcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHH
Q 002728 511 NLLQHLKDLGDPMMEGISTDTEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNE-LDNNGRTALHIAASRGHEH 589 (887)
Q Consensus 511 ~l~~~lk~~~~~~~e~l~~d~e~~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~-~d~~G~TpLh~Aa~~g~~~ 589 (887)
.+++.+..........++.. ...++..|..|.++|..|+..|+.++++.||+.|+|+|. ++..+.||||.||..|+.+
T Consensus 15 ~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d 93 (396)
T KOG1710|consen 15 PLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD 93 (396)
T ss_pred HHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence 44555444332323333333 445677888999999999999999999999999999986 5788999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHH
Q 002728 590 CVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAE 629 (887)
Q Consensus 590 ~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~ 629 (887)
+.++|++.|+.+...|+-|+|+-..|+--||.++|..+-.
T Consensus 94 vcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN 133 (396)
T KOG1710|consen 94 VCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINN 133 (396)
T ss_pred HHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhc
Confidence 9999999999999999999999999999999999988744
No 99
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.36 E-value=6.3e-12 Score=114.72 Aligned_cols=112 Identities=36% Similarity=0.538 Sum_probs=103.6
Q ss_pred cccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhcCCCc
Q 002728 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLCYKPQ 474 (887)
Q Consensus 396 lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~~~~~ 474 (887)
+|+.++++.+..++..++.+.+.+|+.|+.+|+.++.+|+|.+|.++++. ..+|++..+..+.+|++||+..++.+.++
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence 47889999999999999999999999999999999999999999999977 45577888999999999999999888899
Q ss_pred eeEEEEeeceEEEEeeHHHHHHHHHhccccHHH
Q 002728 475 LFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTI 507 (887)
Q Consensus 475 ~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~ 507 (887)
.++++|.+.|++++++++.|.+++.++|.....
T Consensus 81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 999999999999999999999999999876554
No 100
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.36 E-value=2.9e-12 Score=132.72 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=102.7
Q ss_pred HHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceE
Q 002728 407 QLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQ 485 (887)
Q Consensus 407 ~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ 485 (887)
.+....+.+.|++|+.|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.+++++++|.++|+
T Consensus 26 ~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~ 105 (226)
T PRK10402 26 DVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECW 105 (226)
T ss_pred HHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEE
Confidence 456677888999999999999999999999999999987 5678999999999999999999999999999999999999
Q ss_pred EEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhc
Q 002728 486 LLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDL 519 (887)
Q Consensus 486 ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~ 519 (887)
++.+++++|.+++..+|.....+++.+..++...
T Consensus 106 i~~i~~~~~~~ll~~~p~~~~~~~~~l~~~~~~~ 139 (226)
T PRK10402 106 CLALPMKDCRPLLLNDALFLRKLCKFLSHKNYRN 139 (226)
T ss_pred EEEEEHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888887765443
No 101
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.33 E-value=9.5e-12 Score=127.81 Aligned_cols=132 Identities=23% Similarity=0.376 Sum_probs=117.3
Q ss_pred hhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhc
Q 002728 392 DQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLC 470 (887)
Q Consensus 392 ~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~ 470 (887)
.+.+.|...+.+....+....+.+.+++|+.++.+|+.++.+|+|.+|.++++. ..+|++.++..+++|++||+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~ 82 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG 82 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence 345667777888888888899999999999999999999999999999999988 4568899999999999999999999
Q ss_pred CCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCc
Q 002728 471 YKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLGDPM 523 (887)
Q Consensus 471 ~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~~~ 523 (887)
+.|++++++|.++|+++.++++.|.+++..+|.....++..+.+++.......
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l~~~~~~~ 135 (214)
T COG0664 83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRLRQALERL 135 (214)
T ss_pred CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999887788888888888888877765443
No 102
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.32 E-value=2.7e-12 Score=99.90 Aligned_cols=54 Identities=44% Similarity=0.611 Sum_probs=39.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 002728 575 GRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILA 628 (887)
Q Consensus 575 G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll 628 (887)
|+||||+||..|+.+++++|+++|+|+|.+|.+|.||||.|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 678888888888888888888888888888888888888888888888888775
No 103
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.32 E-value=7.9e-12 Score=109.21 Aligned_cols=89 Identities=31% Similarity=0.499 Sum_probs=82.9
Q ss_pred eeccCCCeEEecCCCCCeEEEEEeceEEEEEec-CCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceEEEEeeHHH
Q 002728 415 EYFPPKEDVILQNEAPTDLYILVTGAMELITRK-GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRTA 493 (887)
Q Consensus 415 ~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~-~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ll~l~~~~ 493 (887)
+.|++|+.|+.+|+.++.+|||++|.++++... +|+..++..+.+|++||+.+++.+.++.++++|.++|+++.+++++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~ 81 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRED 81 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHH
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHH
Confidence 679999999999999999999999999998854 4666678999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 002728 494 FLSLVQANVG 503 (887)
Q Consensus 494 f~~ll~~~~~ 503 (887)
|.++++++|+
T Consensus 82 ~~~~~~~~p~ 91 (91)
T PF00027_consen 82 FLQLLQQDPE 91 (91)
T ss_dssp HHHHHHHSHH
T ss_pred HHHHHHhCcC
Confidence 9999999984
No 104
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.29 E-value=1e-13 Score=141.77 Aligned_cols=175 Identities=19% Similarity=0.288 Sum_probs=117.4
Q ss_pred CcchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhhh-hhhhhhhccchhhhhhhccchhhHhhHHHHH
Q 002728 109 PLAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKTW-LTFDVISTIPSEAGRKFLPSALQAYGYFNML 187 (887)
Q Consensus 109 ~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~~-f~~Dlis~lP~~~~~~~~~~~~~~~~~~~ll 187 (887)
.++.+|..+-++|..+++++++.| .-+.|++++- -++|+++++|+.+...... +-...+.|-.|
T Consensus 228 aFFclDTACVmIFT~EYlLRL~aA--------------PsR~rF~RSvMSiIDVvAIlPYYigLv~t~-N~DVSGaFVTL 292 (632)
T KOG4390|consen 228 AFFCLDTACVMIFTGEYLLRLFAA--------------PSRYRFLRSVMSIIDVVAILPYYIGLVMTD-NEDVSGAFVTL 292 (632)
T ss_pred eeEEecceeEEEeeHHHHHHHHcC--------------chHHHHHHHHHHHHHHhhhhhhheEEEecC-CccccceeEEE
Confidence 367789999999999999999988 3345788885 7899999999876443322 21222233333
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHH
Q 002728 188 RLWRLRRVSRLFARLEKDRNYSYIR----VRYSKLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVR 263 (887)
Q Consensus 188 rl~rl~r~~~~~~~l~~~~~~~~~~----~~~~~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~ 263 (887)
|.+|++|++++-..-..-+-..|.. ..+..|++.+...+.++|.++||-..... .+.+..
T Consensus 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~----------------at~FTs 356 (632)
T KOG4390|consen 293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSS----------------ATKFTS 356 (632)
T ss_pred EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcccc----------------cccccc
Confidence 3444444333322211111112221 33344555556666777888777664321 233445
Q ss_pred HHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002728 264 YVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNN 314 (887)
Q Consensus 264 Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~ 314 (887)
...+||+.++||||.||||..|.|..+++|..++.+.|+++.|+.+..+.+
T Consensus 357 IPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVS 407 (632)
T KOG4390|consen 357 IPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVS 407 (632)
T ss_pred CcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEe
Confidence 567999999999999999999999999999999999999999987765443
No 105
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.29 E-value=2e-11 Score=127.49 Aligned_cols=130 Identities=16% Similarity=0.129 Sum_probs=111.9
Q ss_pred hhhhhcccCCCHHHHHHHHHhcc-eeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhh
Q 002728 391 VDQVYLFRGVSNDLLFQLVTEMK-AEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGL 468 (887)
Q Consensus 391 l~~~~lf~~~s~~~l~~l~~~~~-~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~ 468 (887)
+++.+.|..++++.+..|....+ ...|++|+.|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 44555555799999999998876 46799999999999999999999999999988 46789989999999999999776
Q ss_pred hcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcCC
Q 002728 469 LCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLGD 521 (887)
Q Consensus 469 l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~ 521 (887)
+. .+...+++|.++|.++.++++.|.+++..+|+....+++.+.+++.....
T Consensus 95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~ 146 (235)
T PRK11161 95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQE 146 (235)
T ss_pred cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHH
Confidence 54 44567899999999999999999999999999999998888877665443
No 106
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.29 E-value=3.4e-11 Score=110.64 Aligned_cols=114 Identities=29% Similarity=0.476 Sum_probs=102.3
Q ss_pred cccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEe-cCCceEEEEEecCCCeeechhhh--cCC
Q 002728 396 LFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITR-KGGIEQVVGEAKPGDVVGELGLL--CYK 472 (887)
Q Consensus 396 lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~-~~g~~~~~~~l~~g~~fGe~~~l--~~~ 472 (887)
+|.+++.+.+..++..++.+.|++|+.|+.+|+.++.+|+|.+|.++++.. .+|.+..+..+.+|++||+.+++ ...
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~ 80 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR 80 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence 578999999999999999999999999999999999999999999999874 56778889999999999999988 456
Q ss_pred CceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHH
Q 002728 473 PQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIM 509 (887)
Q Consensus 473 ~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~ 509 (887)
+...++.+.+.|.++.++.+.+.+.+..++.....++
T Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 7889999999999999999999999988877655443
No 107
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.28 E-value=2.6e-11 Score=102.59 Aligned_cols=77 Identities=29% Similarity=0.566 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHH
Q 002728 222 TLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFN 301 (887)
Q Consensus 222 ~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g 301 (887)
++++.++.++++|.+.+ +.. ...|.+|+||+++|+||+||||+.|.++.+++++++.+++|
T Consensus 2 ~~~~~l~~~~~~~~~~~----~~~---------------~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G 62 (79)
T PF07885_consen 2 ILLLVLAFGAIFFYISE----GSE---------------KWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIG 62 (79)
T ss_dssp HHHHHHHHHHHHHHHTT----SSS---------------TTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHH
T ss_pred EEEeeeHHHHHHHHHHH----hcc---------------cCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHH
Confidence 35666778888888721 000 12588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002728 302 LGLTSYLLGNMNNLVV 317 (887)
Q Consensus 302 ~~l~a~~ig~~~~~i~ 317 (887)
+.++++.++.+++.+.
T Consensus 63 ~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 63 IFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998875
No 108
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.27 E-value=7.5e-12 Score=97.38 Aligned_cols=54 Identities=46% Similarity=0.714 Sum_probs=46.1
Q ss_pred CCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHh
Q 002728 672 GTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725 (887)
Q Consensus 672 g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~ 725 (887)
|+||||+||..|+.+++++|+++|+|++.+|.+|+||+|+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999999999999999999999999999999999999999999984
No 109
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.26 E-value=1.2e-10 Score=127.01 Aligned_cols=132 Identities=20% Similarity=0.321 Sum_probs=120.8
Q ss_pred HhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechh
Q 002728 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELG 467 (887)
Q Consensus 388 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~ 467 (887)
.+++.++|.|..++++.+.+|...+...+|.+||.|+..|.+...+|+|.+|.|++....+ .++..+..||.||-.+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g---~v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGG---EVLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEcCCC---eeeeeeccCccccchh
Confidence 5678899999999999999999999999999999999999999999999999999987544 3788999999999999
Q ss_pred hhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcCCC
Q 002728 468 LLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLGDP 522 (887)
Q Consensus 468 ~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~~ 522 (887)
+++..+....+.+.+++-+|.|+++.|++++++||.+..++..++..++++.-+.
T Consensus 83 l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~ 137 (610)
T COG2905 83 LFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADR 137 (610)
T ss_pred hcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888889999999999999999999999999999998988887754443
No 110
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.8e-11 Score=125.91 Aligned_cols=123 Identities=24% Similarity=0.375 Sum_probs=109.4
Q ss_pred HhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechh
Q 002728 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELG 467 (887)
Q Consensus 388 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~ 467 (887)
.+.+++.-||++++++.+.++...|.++.+..|+.|+.||+.++.+|+|.+|.++++... ..+..+.+|.+|||++
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~----~~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNG----TYVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEECC----eEEeeeCCCCchhhhH
Confidence 456677889999999999999999999999999999999999999999999999999853 3578899999999999
Q ss_pred hhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHH
Q 002728 468 LLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQ 514 (887)
Q Consensus 468 ~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~ 514 (887)
++.+.||.+|+.|.+++.++.|+|..|..++-.+..-...|...+++
T Consensus 197 Lmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~ 243 (368)
T KOG1113|consen 197 LMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLE 243 (368)
T ss_pred hhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhh
Confidence 99999999999999999999999999999877665555555555444
No 111
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.18 E-value=8.7e-11 Score=118.71 Aligned_cols=103 Identities=15% Similarity=0.226 Sum_probs=92.8
Q ss_pred CCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhcCCCc--eeEEEEeeceEEEEeeHHHHHH
Q 002728 420 KEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLCYKPQ--LFTVRTKRLSQLLRLNRTAFLS 496 (887)
Q Consensus 420 ~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~~~~~--~~tv~a~~~~~ll~l~~~~f~~ 496 (887)
|+.|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+.+++.+.+. .++++|.++|+++.+++++|.+
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~ 80 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK 80 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence 68899999999999999999999987 56689999999999999999999987754 5789999999999999999999
Q ss_pred HHHhccccHHHHHHHHHHHHhhcCCC
Q 002728 497 LVQANVGDGTIIMNNLLQHLKDLGDP 522 (887)
Q Consensus 497 ll~~~~~~~~~i~~~l~~~lk~~~~~ 522 (887)
++..+|.....+++.+.+++......
T Consensus 81 l~~~~p~l~~~~~~~l~~~l~~~~~~ 106 (193)
T TIGR03697 81 AIEEDPDLSMLLLQGLSSRILQTEMM 106 (193)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988877765443
No 112
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.15 E-value=2e-10 Score=119.13 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=104.8
Q ss_pred HHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceE
Q 002728 407 QLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQ 485 (887)
Q Consensus 407 ~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ 485 (887)
.++...+...|++|+.|+.+||.++.+|+|.+|.|+++. ..+|++.++..+.+|++||+. .+.++.++++|.++|.
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~ 109 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTT 109 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceE
Confidence 345667889999999999999999999999999999987 567888899999999999964 4667889999999999
Q ss_pred EEEeeHHHHHHHHHhccccHHHHHHHHHHHHhhcCCCcccccchhhHHH
Q 002728 486 LLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLGDPMMEGISTDTEQK 534 (887)
Q Consensus 486 ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~~~~~e~l~~d~e~~ 534 (887)
++.++++.|.+++..+|+....+++.+.+++....+.+......+.+.+
T Consensus 110 v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~R 158 (230)
T PRK09391 110 VRLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMER 158 (230)
T ss_pred EEEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999999999999999999999888887765544333333334444
No 113
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=7.4e-11 Score=126.29 Aligned_cols=117 Identities=22% Similarity=0.395 Sum_probs=106.2
Q ss_pred HHHHHhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecC--CceEEEEEecCCC
Q 002728 384 HFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKG--GIEQVVGEAKPGD 461 (887)
Q Consensus 384 ~~l~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~--g~~~~~~~l~~g~ 461 (887)
+.-+..+|+++|+|++++++.+..++..++.++|..|++|++||+.++.+|+|.+|.|.+..... +.++.+..++.||
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd 346 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGD 346 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccc
Confidence 34567889999999999999999999999999999999999999999999999999999987444 4556788999999
Q ss_pred eeechhhhcCCCceeEEEEeec-eEEEEeeHHHHHHHHHh
Q 002728 462 VVGELGLLCYKPQLFTVRTKRL-SQLLRLNRTAFLSLVQA 500 (887)
Q Consensus 462 ~fGe~~~l~~~~~~~tv~a~~~-~~ll~l~~~~f~~ll~~ 500 (887)
+|||.+++....|++++.|... ++++.|+|++|..++-.
T Consensus 347 ~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~ 386 (732)
T KOG0614|consen 347 YFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGD 386 (732)
T ss_pred hhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhccc
Confidence 9999999999999999999988 89999999999887653
No 114
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.08 E-value=1.3e-10 Score=124.43 Aligned_cols=129 Identities=18% Similarity=0.267 Sum_probs=113.2
Q ss_pred HHHHHHHhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCC
Q 002728 382 ISHFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGD 461 (887)
Q Consensus 382 i~~~l~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~ 461 (887)
=...+..+.+++..|.+++....+..++..|.+..|++|..|++|||+++.+|.+..|.+++.... +.++.+++|.
T Consensus 147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g----~ll~~m~~gt 222 (732)
T KOG0614|consen 147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREG----KLLGKMGAGT 222 (732)
T ss_pred cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEeeCC----eeeeccCCch
Confidence 345677888899999999999999999999999999999999999999999999999999998733 5789999999
Q ss_pred eeechhhhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHH
Q 002728 462 VVGELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQ 514 (887)
Q Consensus 462 ~fGe~~~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~ 514 (887)
.|||.++|.+.+|+++|+|.+.++++.|+|+.|..+|.........-..++++
T Consensus 223 vFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 223 VFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred hhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988764433333333333
No 115
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.07 E-value=9.5e-10 Score=124.17 Aligned_cols=117 Identities=16% Similarity=0.083 Sum_probs=103.0
Q ss_pred HhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechh
Q 002728 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELG 467 (887)
Q Consensus 388 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~ 467 (887)
..+++++++|++++++.+.++...++.+.|++||.|+++|+.++.+|+|.+|.|+++....+.+.++..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 3567889999999999999999999999999999999999999999999999999988443236788899999999985
Q ss_pred hhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHH
Q 002728 468 LLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGT 506 (887)
Q Consensus 468 ~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~ 506 (887)
+.+.++.++++|.++|+++.++++.|..+....+-+..
T Consensus 86 -l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~ 123 (413)
T PLN02868 86 -LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSD 123 (413)
T ss_pred -hCCCCcccEEEECCCEEEEEEcHHHHhhhccccccccc
Confidence 67888999999999999999999999887665554433
No 116
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.07 E-value=6.3e-10 Score=113.31 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=88.6
Q ss_pred hcceeeccCCCeEEecCC--CCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceEEE
Q 002728 411 EMKAEYFPPKEDVILQNE--APTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLL 487 (887)
Q Consensus 411 ~~~~~~~~p~e~i~~qge--~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ll 487 (887)
.++...|++|+.|+.+|| .++.+|+|++|.|+++. ..+|++.++..+.+|++||+.+++ +.+++++++|.++|+++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~ 83 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID 83 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence 457788999999999999 77999999999999988 567999999999999999997654 57889999999999999
Q ss_pred EeeHHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q 002728 488 RLNRTAFLSLVQANVGDGTIIMNNLLQHLKDLG 520 (887)
Q Consensus 488 ~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~~~ 520 (887)
.++++.| +|.....++..+.+.+....
T Consensus 84 ~i~~~~~------~~~~~~~l~~~l~~~~~~~~ 110 (202)
T PRK13918 84 VLNPALM------SAEDNLVLTQHLVRTLARAY 110 (202)
T ss_pred EEEHHHc------ChhhHHHHHHHHHHHHHHHH
Confidence 9999987 56777777777776665543
No 117
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.97 E-value=2.4e-09 Score=100.37 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=94.3
Q ss_pred CCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCCCCCCcccCCC
Q 002728 662 GGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG-SDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKAPVLTVPK 740 (887)
Q Consensus 662 g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-adv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~~~~~~~~~~~ 740 (887)
+.++|.+|..|||||+.||++|+.+.+.+|+++| |+|...|..|.++..+|.+.|+.+.++.|.+.-.....+..+.+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~- 80 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSR- 80 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCC-
Confidence 4689999999999999999999999999999999 89999999999999999999999999999877443333221111
Q ss_pred CCCCCCccccccccCCCCCCCCCCcccccccccccccccCCCCCCCccccccccccccCCCCCCCCCCCC
Q 002728 741 KQQAPNPRKHLVKYSSEPSIPPYTPEVVSAVPEINLLNRHSRRRPNTFHNSLFGIVSAANTGEHSINFPT 810 (887)
Q Consensus 741 ~~~~~~~~~~l~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~ 810 (887)
..++.....+..+..+..++.........++......+..........|-.+..++..++..+..+.|.
T Consensus 81 -~e~lfyCE~Cd~~ip~~~~snH~tSttHllsl~~~pa~k~~p~~i~pks~GyrLl~~~GW~pe~GLGp~ 149 (223)
T KOG2384|consen 81 -DEALFYCEVCDIYIPNSKKSNHFTSTTHLLSLQHIPANKFQPHLIKPKSLGYRLLSQYGWSPEAGLGPE 149 (223)
T ss_pred -CCccchhhhhhhhccCCCCccchhhHHHHhhhccCCCCCCCCCcCCCCCchHHHHHhcCCCcccCCCcc
Confidence 111222233333332222222222222223222222111121223344555778888887776666554
No 118
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.93 E-value=8.5e-10 Score=116.47 Aligned_cols=101 Identities=33% Similarity=0.410 Sum_probs=92.4
Q ss_pred hHHHhhcCCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCC
Q 002728 531 TEQKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY-GADLNIRDSEGS 609 (887)
Q Consensus 531 ~e~~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gad~n~~d~~G~ 609 (887)
.....+..+.+.-.++.+||..||...++.+.-.|.|.+..|.+.+|+||.||..|+++++++|++. +.|++.+|..|+
T Consensus 495 PRR~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~r 574 (622)
T KOG0506|consen 495 PRREGGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGR 574 (622)
T ss_pred cccccCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCC
Confidence 3344555667777899999999999999999999999999999999999999999999999999986 899999999999
Q ss_pred cHHHHHHhcCCHHHHHHHHHCC
Q 002728 610 VPLWEAMLGKHEPVVRILAENG 631 (887)
Q Consensus 610 tpL~~A~~~~~~~~v~~Ll~~g 631 (887)
|||-.|..-+|.+++++|-+.-
T Consensus 575 tPlDdA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 575 TPLDDAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred CcchHhHhcCcHHHHHHHHHHh
Confidence 9999999999999999998754
No 119
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.88 E-value=1.4e-09 Score=114.89 Aligned_cols=88 Identities=32% Similarity=0.394 Sum_probs=80.6
Q ss_pred hHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHhcCCHHH
Q 002728 642 FACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID-QGSDIDKPDIHGWTPRALADHQGQEDI 720 (887)
Q Consensus 642 ~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gadv~~~d~~g~Tpl~~A~~~g~~~i 720 (887)
.+..|++.|++..++.+.-.|.|++.+|.+.+|+||.||.+|+++++++|++ .+.|++.+|.+|+|||+-|...+|.++
T Consensus 509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v 588 (622)
T KOG0506|consen 509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEV 588 (622)
T ss_pred hhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHH
Confidence 3456788888888888888899999999999999999999999999999998 589999999999999999999999999
Q ss_pred HHHHhcCCC
Q 002728 721 QILLQMKPE 729 (887)
Q Consensus 721 ~~lL~~~~~ 729 (887)
+++|.++..
T Consensus 589 ~k~L~~~~~ 597 (622)
T KOG0506|consen 589 VKLLEEAQY 597 (622)
T ss_pred HHHHHHHhc
Confidence 999987654
No 120
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=3e-09 Score=109.69 Aligned_cols=115 Identities=22% Similarity=0.373 Sum_probs=106.3
Q ss_pred HHHHHhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCee
Q 002728 384 HFLFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVV 463 (887)
Q Consensus 384 ~~l~~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~f 463 (887)
..||.+.|+++|+++.+.......++..+....|.+|+.|+.||+.++.+|+|.+|.|.+....+| ..+ .++.|++|
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~--v~v-kl~~~dyf 311 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDG--VEV-KLKKGDYF 311 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhccCC--eEE-Eechhhhc
Confidence 458899999999999999999999999999999999999999999999999999999999875555 344 89999999
Q ss_pred echhhhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhc
Q 002728 464 GELGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQAN 501 (887)
Q Consensus 464 Ge~~~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~ 501 (887)
||.+++.+.|+.++|.|.+...+..+++..|..++...
T Consensus 312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence 99999999999999999999999999999999988654
No 121
>PF13606 Ank_3: Ankyrin repeat
Probab=98.75 E-value=1e-08 Score=68.27 Aligned_cols=30 Identities=60% Similarity=1.101 Sum_probs=28.5
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhCCCCCCC
Q 002728 671 NGTTPLHVAISEGNIEIVKFLIDQGSDIDK 700 (887)
Q Consensus 671 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~ 700 (887)
+|+||||+||+.|+.++|++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999974
No 122
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.75 E-value=2.9e-08 Score=105.47 Aligned_cols=88 Identities=33% Similarity=0.390 Sum_probs=81.9
Q ss_pred cchHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCC
Q 002728 542 LPLSLSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKH 620 (887)
Q Consensus 542 ~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~ 620 (887)
..--||..+..|+.+..-.||..||++|..+ ..|.||||.||..|+..-+++|+-+|||++..|.+|.||+-+|-.+||
T Consensus 133 LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH 212 (669)
T KOG0818|consen 133 LSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGH 212 (669)
T ss_pred HHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCc
Confidence 3446999999999999999999999999876 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 002728 621 EPVVRILAE 629 (887)
Q Consensus 621 ~~~v~~Ll~ 629 (887)
.++.+-|++
T Consensus 213 ~~laeRl~e 221 (669)
T KOG0818|consen 213 HELAERLVE 221 (669)
T ss_pred hHHHHHHHH
Confidence 998887765
No 123
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.75 E-value=2.1e-07 Score=102.90 Aligned_cols=54 Identities=31% Similarity=0.578 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLV 316 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i 316 (887)
.+.+|+||+++|+||+||||+.|.+..+++|+++++++|+++|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999887754
No 124
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.73 E-value=2.4e-08 Score=107.35 Aligned_cols=122 Identities=22% Similarity=0.298 Sum_probs=99.4
Q ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHH
Q 002728 579 LHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKI 658 (887)
Q Consensus 579 Lh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~L 658 (887)
+..|+..+..--.+.+-.+|.++-.++.+..+.||+|+..|+-++|++++++|.. ++
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~-------------------el---- 926 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPS-------------------EL---- 926 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCH-------------------HH----
Confidence 3445555554444455556778888888888888888888888888888888761 11
Q ss_pred HHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCC
Q 002728 659 VHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPE 729 (887)
Q Consensus 659 l~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~ 729 (887)
++..|..|.|+||.||..++..+.++|+++||.+-..|..|.||..-|.+.|+.+++.+|.....
T Consensus 927 ------ld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq~ 991 (1004)
T KOG0782|consen 927 ------LDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQN 991 (1004)
T ss_pred ------HHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhhc
Confidence 23456789999999999999999999999999999999999999999999999999999976543
No 125
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.72 E-value=7.3e-09 Score=116.12 Aligned_cols=95 Identities=27% Similarity=0.373 Sum_probs=76.8
Q ss_pred HHHHHHHc-CCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHhcCCHHHHHHHHHCCCC
Q 002728 557 LLHQLLRR-GSD-PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSE-GSVPLWEAMLGKHEPVVRILAENGAL 633 (887)
Q Consensus 557 ~l~~Ll~~-g~~-~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~-G~tpL~~A~~~~~~~~v~~Ll~~g~~ 633 (887)
.++-++.+ +-+ .|..|..|+|+||+|++.|..+++++|+++|+|++.+|.+ |+||||.|+..||.+|+-+|+.+|+
T Consensus 32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~- 110 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGR- 110 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCC-
Confidence 34555543 212 5778999999999999999999999999999999999874 8999999999999888888888765
Q ss_pred cCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHc
Q 002728 634 ISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISE 682 (887)
Q Consensus 634 ~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~ 682 (887)
....+|++|..||..-++-
T Consensus 111 ------------------------------SL~i~Dkeglsplq~~~r~ 129 (1267)
T KOG0783|consen 111 ------------------------------SLRIKDKEGLSPLQFLSRV 129 (1267)
T ss_pred ------------------------------ceEEecccCCCHHHHHhhc
Confidence 4556788899999887753
No 126
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.72 E-value=3.5e-08 Score=104.91 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=75.7
Q ss_pred hhHhHHHHhCCHHHHHHHHHcCCCCccCCC-CCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHH
Q 002728 641 HFACTAIEQNDLLLLEKIVHYGGDVTQLTS-NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQED 719 (887)
Q Consensus 641 ~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~ 719 (887)
..++..++.++++..-.|+..|+++|-.+. .|.||||.||..|+..-+++|+-+|||+.+.|..|.||+++|...||.+
T Consensus 135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~ 214 (669)
T KOG0818|consen 135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE 214 (669)
T ss_pred HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence 345667788888888888888999998774 8999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh
Q 002728 720 IQILLQ 725 (887)
Q Consensus 720 i~~lL~ 725 (887)
+.+-|.
T Consensus 215 laeRl~ 220 (669)
T KOG0818|consen 215 LAERLV 220 (669)
T ss_pred HHHHHH
Confidence 877654
No 127
>PF13606 Ank_3: Ankyrin repeat
Probab=98.71 E-value=1.6e-08 Score=67.29 Aligned_cols=30 Identities=57% Similarity=0.751 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 002728 574 NGRTALHIAASRGHEHCVVLLLEYGADLNI 603 (887)
Q Consensus 574 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~ 603 (887)
+|+||||+||+.|+.++|++|+++|+|+|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 589999999999999999999999999874
No 128
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.67 E-value=2.5e-08 Score=68.46 Aligned_cols=33 Identities=45% Similarity=0.795 Sum_probs=31.2
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 002728 671 NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDI 703 (887)
Q Consensus 671 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~ 703 (887)
+|+||||+|+..|+.+++++|+++||+++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 129
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.65 E-value=3.1e-08 Score=68.05 Aligned_cols=33 Identities=58% Similarity=0.856 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 002728 574 NGRTALHIAASRGHEHCVVLLLEYGADLNIRDS 606 (887)
Q Consensus 574 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~ 606 (887)
+|+||||+||..|+.+++++|+++|+|++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999998874
No 130
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.61 E-value=8.2e-08 Score=103.92 Aligned_cols=90 Identities=34% Similarity=0.463 Sum_probs=79.4
Q ss_pred CcchHHHHHHHhCCHHHHHHHHHc--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc
Q 002728 541 DLPLSLSFAAVRGDGLLLHQLLRR--GSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLG 618 (887)
Q Consensus 541 ~~~~~l~~Aa~~g~~~~l~~Ll~~--g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~ 618 (887)
+.+.++|.++...+.+-+...+.. +..++..|..|+||||+|+..|+.++++.|+.+|||+..+|.+|++|||.|+..
T Consensus 19 ~~p~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 19 HLPKPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST 98 (560)
T ss_pred cCCcccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc
Confidence 445679999999998888875543 456788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHC
Q 002728 619 KHEPVVRILAEN 630 (887)
Q Consensus 619 ~~~~~v~~Ll~~ 630 (887)
|+.+++..++.+
T Consensus 99 g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 99 GNEQIITEVLRH 110 (560)
T ss_pred CCHHHHHHHHHH
Confidence 999887777654
No 131
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.58 E-value=1.4e-07 Score=101.48 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=104.2
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHhcCCHH
Q 002728 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGAD--LNIRDSEGSVPLWEAMLGKHEP 622 (887)
Q Consensus 545 ~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad--~n~~d~~G~tpL~~A~~~~~~~ 622 (887)
-+..|+..+|.--++..-..|.+.-.++.+.+|.||+|+..|+-++|+++|+||.. ++..|..|.|+||-|+..++..
T Consensus 869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~ 948 (1004)
T KOG0782|consen 869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA 948 (1004)
T ss_pred HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence 37888999998888888889999888999999999999999999999999999865 6778899999999999999888
Q ss_pred HHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHh
Q 002728 623 VVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693 (887)
Q Consensus 623 ~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~ 693 (887)
+..+|++.|+ .+...|..|.||-..|-..|+.+.+.+|-.
T Consensus 949 vc~~lvdaga-------------------------------sl~ktd~kg~tp~eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 949 VCQLLVDAGA-------------------------------SLRKTDSKGKTPQERAQQAGDPDLAAYLES 988 (1004)
T ss_pred HHHHHHhcch-------------------------------hheecccCCCChHHHHHhcCCchHHHHHhh
Confidence 8888888776 445567899999999999999999988864
No 132
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.52 E-value=2e-07 Score=101.11 Aligned_cols=92 Identities=26% Similarity=0.335 Sum_probs=81.7
Q ss_pred chhHhHHHHhCCHHHHHHHHHcCCCC--cc--CCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhc
Q 002728 640 GHFACTAIEQNDLLLLEKIVHYGGDV--TQ--LTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQ 715 (887)
Q Consensus 640 ~~~~~~a~~~~~~~~~~~Ll~~g~~~--~~--~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~ 715 (887)
+..+..|+...++..+-+|+.+|-.. |. -+.+|+||||+||..|++.+.++|+-+|+|+-++|.+|+|||.||.+.
T Consensus 625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a 704 (749)
T KOG0705|consen 625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQA 704 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhc
Confidence 45566788889999999999998643 32 345889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCCCC
Q 002728 716 GQEDIQILLQMKPEPK 731 (887)
Q Consensus 716 g~~~i~~lL~~~~~~~ 731 (887)
|..+|+..|+.+|.+.
T Consensus 705 ~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 705 GSQECIDVLLQYGCPD 720 (749)
T ss_pred ccHHHHHHHHHcCCCc
Confidence 9999999999998764
No 133
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.47 E-value=3.5e-07 Score=99.33 Aligned_cols=90 Identities=33% Similarity=0.414 Sum_probs=81.7
Q ss_pred hHHHHHHHhCCHHHHHHHHHcCCC--CCC--CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRGSD--PNE--LDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g~~--~n~--~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~ 619 (887)
.-|.-|....|+..+-.||.+|.. +|. .+.+|+||||+||+.|++.+.++|+=+|+|+-.+|..|+|||.+|-++|
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcc
Confidence 357888889999999999999865 343 4678999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHCCCC
Q 002728 620 HEPVVRILAENGAL 633 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~ 633 (887)
.-+|+..|+++|+.
T Consensus 706 sqec~d~llq~gcp 719 (749)
T KOG0705|consen 706 SQECIDVLLQYGCP 719 (749)
T ss_pred cHHHHHHHHHcCCC
Confidence 99999999999973
No 134
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.44 E-value=8.5e-07 Score=101.79 Aligned_cols=133 Identities=26% Similarity=0.226 Sum_probs=105.3
Q ss_pred hHHHHHHHhCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcC
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRG----SDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g----~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~ 619 (887)
-....|+..||.-.|+..++.. .++|+.|.-|+++||+|..+.+.+++++|++++..+ ..+|.+|+..|
T Consensus 27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~ 99 (822)
T KOG3609|consen 27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVG 99 (822)
T ss_pred HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHH
Confidence 4588999999999999999753 457889999999999999999999999999987655 35899999999
Q ss_pred CHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 002728 620 HEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDID 699 (887)
Q Consensus 620 ~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~ 699 (887)
..++|++++.+-........ .+..-...-..+-|||.+||..+|.||+++||.+|+++.
T Consensus 100 ~v~~VE~ll~~~~~~~~~~~---------------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 100 SVPLVELLLVHFVDAPYLER---------------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHHHHHHHhcccccchhcc---------------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 99999999987543221110 111111222467899999999999999999999999987
Q ss_pred CCCCC
Q 002728 700 KPDIH 704 (887)
Q Consensus 700 ~~d~~ 704 (887)
.+-..
T Consensus 159 ~PH~~ 163 (822)
T KOG3609|consen 159 IPHDI 163 (822)
T ss_pred CCccc
Confidence 65433
No 135
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.44 E-value=1.3e-07 Score=106.52 Aligned_cols=80 Identities=34% Similarity=0.364 Sum_probs=74.7
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELD-NNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
.|.-|.++||.|+..|..+++++||++|+|++.+| ..|+||||-|...|+.||+-+||.+|+....+|++|..||..-+
T Consensus 48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~ 127 (1267)
T KOG0783|consen 48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS 127 (1267)
T ss_pred HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence 34557899999999999999999999999999998 57999999999999999999999999999999999999998877
Q ss_pred h
Q 002728 617 L 617 (887)
Q Consensus 617 ~ 617 (887)
+
T Consensus 128 r 128 (1267)
T KOG0783|consen 128 R 128 (1267)
T ss_pred h
Confidence 6
No 136
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.40 E-value=8.3e-07 Score=104.06 Aligned_cols=128 Identities=23% Similarity=0.184 Sum_probs=102.6
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHH
Q 002728 570 ELDNNGRTALHIAASRGHEHCVVLLLEY-GADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIE 648 (887)
Q Consensus 570 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~ 648 (887)
.....|+|-||+|+..++.-.++.+++- |-..+..|.+|...+|. |..++.+.+-+|..
T Consensus 569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~------------------- 628 (975)
T KOG0520|consen 569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPIS------------------- 628 (975)
T ss_pred cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEe-------------------
Confidence 3457899999999999999999999985 66667777777778887 44555554443332
Q ss_pred hCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCC------CCCCCCCCHHHHHHhcCCHHHHH
Q 002728 649 QNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDID------KPDIHGWTPRALADHQGQEDIQI 722 (887)
Q Consensus 649 ~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~------~~d~~g~Tpl~~A~~~g~~~i~~ 722 (887)
-.|..++.+|..||||||+|+..|+..++..|++.|++.. ..+..|.|+.++|...|+..+..
T Consensus 629 -----------~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~ 697 (975)
T KOG0520|consen 629 -----------ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAG 697 (975)
T ss_pred -----------ecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHH
Confidence 3466788999999999999999999999999999887643 34456999999999999999999
Q ss_pred HHhcCC
Q 002728 723 LLQMKP 728 (887)
Q Consensus 723 lL~~~~ 728 (887)
+|.++.
T Consensus 698 ~lse~~ 703 (975)
T KOG0520|consen 698 YLSEKA 703 (975)
T ss_pred HHhhhH
Confidence 987663
No 137
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.33 E-value=9.8e-07 Score=95.76 Aligned_cols=64 Identities=28% Similarity=0.509 Sum_probs=58.2
Q ss_pred CCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHh
Q 002728 662 GGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725 (887)
Q Consensus 662 g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~ 725 (887)
+..++..|..|+||||+|+.-|+.+.++.|+.+|||+..+|+.||+|||.|+..|+.+++.-++
T Consensus 45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vl 108 (560)
T KOG0522|consen 45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVL 108 (560)
T ss_pred hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999999999987655443
No 138
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=98.31 E-value=6.8e-07 Score=73.02 Aligned_cols=46 Identities=24% Similarity=0.550 Sum_probs=41.0
Q ss_pred cccccccceEECCCCchHHHHHHHHHHHHHHHHHhhhheeecccCC
Q 002728 61 CRRITLRRFIISPFEPRYRLWETFLVFLVFYTAWACPFEFGFLNQP 106 (887)
Q Consensus 61 ~~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~~ 106 (887)
+|..+...+||||+|.++.+||.+|+++++++++++|+.++|..+.
T Consensus 29 ~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~ 74 (77)
T PF08412_consen 29 ERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE 74 (77)
T ss_pred HHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence 3455667899999999999999999999999999999999997654
No 139
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.15 E-value=2.3e-06 Score=97.87 Aligned_cols=113 Identities=23% Similarity=0.371 Sum_probs=100.8
Q ss_pred HHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEec-CCceEEEEEecCCCeeechhhhcCCCceeEEEEee
Q 002728 404 LLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRK-GGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKR 482 (887)
Q Consensus 404 ~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~-~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~ 482 (887)
++.++=..+.-....||+.+++|||..|++|+|..|.++..... +|+..+++.++.||.+|+...++++|+..|+.|..
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvR 579 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVR 579 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEe
Confidence 44455556677889999999999999999999999999988754 45555899999999999999999999999999999
Q ss_pred ceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHH
Q 002728 483 LSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHL 516 (887)
Q Consensus 483 ~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~l 516 (887)
++++.+|+..-|.-+...||+....+.+.+.++.
T Consensus 580 dSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 580 DSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred ehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988888776
No 140
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.14 E-value=1.5e-06 Score=103.11 Aligned_cols=89 Identities=30% Similarity=0.436 Sum_probs=80.1
Q ss_pred CchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCH
Q 002728 639 VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQE 718 (887)
Q Consensus 639 ~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~ 718 (887)
..+.+|.|+..+...++++|+++|+++|..|..|+||||.+...|+...+..|+++||+.++.|.+|++|++.|....+.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~ 735 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA 735 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence 44677888888888999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHHHHhcC
Q 002728 719 DIQILLQMK 727 (887)
Q Consensus 719 ~i~~lL~~~ 727 (887)
+++-++...
T Consensus 736 d~~~l~~l~ 744 (785)
T KOG0521|consen 736 DIVLLLRLA 744 (785)
T ss_pred cHHHHHhhh
Confidence 777666543
No 141
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.10 E-value=7.3e-06 Score=77.42 Aligned_cols=68 Identities=31% Similarity=0.262 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCC
Q 002728 565 GSDPNELDNNGRTALHIAASRGHEHCVVLLLEYG-ADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGA 632 (887)
Q Consensus 565 g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-ad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~ 632 (887)
+.++|.+|..|||||+.||..|+.+.|.+|+.+| +.|-..|..|.+++.+|-++|+.++++.|.+.-.
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ 70 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR 70 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999 8999999999999999999999999999988743
No 142
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=98.07 E-value=7.6e-05 Score=80.20 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 002728 260 LWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARR 339 (887)
Q Consensus 260 ~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~ 339 (887)
....|..|+|....|..++||||+.|.|.-++..+++..++|.++.|.+++-++- +-+..+--+.+++||-.
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisR--------KLeLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIAR--------KLELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999999999999999999999999999999986653 33445555678888888
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 002728 340 NQLPVRLQDQMLAHLCLRH 358 (887)
Q Consensus 340 ~~lp~~l~~ri~~~~~~~~ 358 (887)
.+|.+++++-.-+-++..|
T Consensus 356 tqLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888865444333333
No 143
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.05 E-value=8e-06 Score=84.73 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=69.0
Q ss_pred chhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHH
Q 002728 640 GHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQED 719 (887)
Q Consensus 640 ~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~ 719 (887)
..-+|.|++.|+.+.++.|++.|+++|+.|....+||.+|+..||.++|++||++||=.+.-.-+|..++.-|. +..
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL---nd~ 113 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL---NDR 113 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh---hHH
Confidence 45678999999999999999999999999999999999999999999999999999976555556766654333 334
Q ss_pred HHHHHhcC
Q 002728 720 IQILLQMK 727 (887)
Q Consensus 720 i~~lL~~~ 727 (887)
|-++|+++
T Consensus 114 IR~mllsy 121 (516)
T KOG0511|consen 114 IRRMLLSY 121 (516)
T ss_pred HHHHHHHH
Confidence 55555444
No 144
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.99 E-value=6.3e-06 Score=96.88 Aligned_cols=131 Identities=27% Similarity=0.311 Sum_probs=105.2
Q ss_pred CCCCcchHHHHHHHhCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCcHHHHH
Q 002728 538 GRMDLPLSLSFAAVRGDGLLLHQLLRR-GSDPNELDNNGRTALHIAASRGHEHCVVLLL-EYGADLNIRDSEGSVPLWEA 615 (887)
Q Consensus 538 ~~~~~~~~l~~Aa~~g~~~~l~~Ll~~-g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gad~n~~d~~G~tpL~~A 615 (887)
....+.+-+|.++..+..-+++.+++- |...+..|.+|.--+|.+|. ++.+++.+|. -+|..++.+|..|+||||+|
T Consensus 570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA 648 (975)
T KOG0520|consen 570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDIRDRNGWTPLHWA 648 (975)
T ss_pred CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccccccccCCCCcccchH
Confidence 455678999999999999999999996 77777888888889999554 5555555544 46899999999999999999
Q ss_pred HhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhC
Q 002728 616 MLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQ 694 (887)
Q Consensus 616 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ 694 (887)
+..|+..++..|.+.|++..... |+...+..|.|+--.|..+|+..+.-+|-+.
T Consensus 649 a~~G~e~l~a~l~~lga~~~~~t-------------------------dps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 649 AFRGREKLVASLIELGADPGAVT-------------------------DPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hhcCHHHHHHHHHHhcccccccc-------------------------CCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 99999999999999888554211 3444455788999999999988887777664
No 145
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.98 E-value=3.3e-05 Score=83.32 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-----CcccccccCCccCCchHHHHHHHHHHHhhhcccccccc--CCcCCchhh
Q 002728 219 ACVTLFAVHCAACTFYLLAEHYRDPK-----GTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGD--IHPVNTRER 291 (887)
Q Consensus 219 ~~~~l~~~h~~ac~~~~i~~~~~~~~-----~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGd--i~p~~~~e~ 291 (887)
++.+++....+|++||+++....+-. ..|-+ -..-...+..+|+||+.|+||||||. ++|..+...
T Consensus 42 ~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-------Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~ 114 (336)
T PF01007_consen 42 VLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-------CVSNVNSFTSAFLFSVETQTTIGYGSRYPTPECPYAI 114 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-------SECT-TTHHHHHHHHHHHHTT---SSSEB-CSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-------ceecccchhhheeEEEEEEEEeccCCcccCCCcchhH
Confidence 34555566678999999986533211 11110 01123478999999999999999999 688889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002728 292 IFDIFFMFFNLGLTSYLLGNMNNLVVHGT 320 (887)
Q Consensus 292 if~i~~~~~g~~l~a~~ig~~~~~i~~~~ 320 (887)
+++++=+++|+++.|.++|.+-+-+..-.
T Consensus 115 ~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 115 FLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998877665543
No 146
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.95 E-value=1.9e-05 Score=82.04 Aligned_cols=70 Identities=30% Similarity=0.298 Sum_probs=60.6
Q ss_pred hHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLW 613 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~ 613 (887)
--||.||..|+.+.|+.|++-|.++|..|.-..+||.+|+..||.++|++|+++||--..-..+|.-.+.
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y 107 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY 107 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence 3489999999999999999999999999999999999999999999999999999866555556655443
No 147
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.88 E-value=1e-05 Score=96.27 Aligned_cols=84 Identities=39% Similarity=0.481 Sum_probs=52.8
Q ss_pred cchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH
Q 002728 542 LPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHE 621 (887)
Q Consensus 542 ~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~ 621 (887)
+.++||.|+..|..-+++.|++.|+++|..|..|+||||.+...|+...+..|+++||++++.|.+|.+||..|....+.
T Consensus 656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~ 735 (785)
T KOG0521|consen 656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA 735 (785)
T ss_pred ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666555444
Q ss_pred HHHH
Q 002728 622 PVVR 625 (887)
Q Consensus 622 ~~v~ 625 (887)
+.+-
T Consensus 736 d~~~ 739 (785)
T KOG0521|consen 736 DIVL 739 (785)
T ss_pred cHHH
Confidence 4433
No 148
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.88 E-value=9.6e-05 Score=84.66 Aligned_cols=58 Identities=24% Similarity=0.601 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGT 320 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~ 320 (887)
.+..|+|++++++||+|||++.|.|..+++|+|++.++|+-++..++++++..+...-
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4777999999999999999999999999999999999999999999999999886553
No 149
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.81 E-value=8.6e-05 Score=85.76 Aligned_cols=132 Identities=22% Similarity=0.199 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCC----CCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHh
Q 002728 574 NGRTALHIAASRGHEHCVVLLLEYG----ADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQ 649 (887)
Q Consensus 574 ~G~TpLh~Aa~~g~~~~v~~Ll~~g----ad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~ 649 (887)
.+.-....|+..|+.-.|+..++.. .++|..|.=|+++|+.|+.+.+.+++++|++++... +..+.+|+..
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~~ 98 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIAV 98 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHHH
Confidence 3444567899999999999888752 578999999999999999999999999999986533 3344444444
Q ss_pred CCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCC
Q 002728 650 NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPE 729 (887)
Q Consensus 650 ~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~ 729 (887)
|...+++.++.+...... ++. .+.+....-..+.||+.+|+..++.||+++|+.+++
T Consensus 99 ~~v~~VE~ll~~~~~~~~--------~~~---------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~ 155 (822)
T KOG3609|consen 99 GSVPLVELLLVHFVDAPY--------LER---------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH 155 (822)
T ss_pred HHHHHHHHHHhcccccch--------hcc---------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence 555555544444222111 010 122222334568899999999999999999999987
Q ss_pred CCCC
Q 002728 730 PKKA 733 (887)
Q Consensus 730 ~~~~ 733 (887)
....
T Consensus 156 ~i~~ 159 (822)
T KOG3609|consen 156 CIPI 159 (822)
T ss_pred CCCC
Confidence 6543
No 150
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.50 E-value=0.0031 Score=73.18 Aligned_cols=125 Identities=21% Similarity=0.349 Sum_probs=69.6
Q ss_pred cccceEECCCCchHH---------HHHHHHHHHHHHHHHhhhheeecccCCCC-C--cchhhHHHHHHHHHHHHhheeEE
Q 002728 65 TLRRFIISPFEPRYR---------LWETFLVFLVFYTAWACPFEFGFLNQPSR-P--LAITDNVVNAIFAIDIILTFFLA 132 (887)
Q Consensus 65 ~~~~~ii~P~s~~~~---------~W~~~~~~~~~~~~~~~P~~~~f~~~~~~-~--~~~~~~~~~~~f~~Di~l~f~ta 132 (887)
.|.++++.|+++|+. .+|.++++.++.+++.+-.+---...... . +.+-+++..++|++++.++...-
T Consensus 1101 ~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVAL 1180 (1956)
T KOG2302|consen 1101 LWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVAL 1180 (1956)
T ss_pred HHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHHhh
Confidence 455689999998763 46777888888888888776421121122 1 22345899999999999876543
Q ss_pred EEeCCceEEEeChhHHHHHHhhh-hhhhhhh----hccchhhhhhhccchhhHhhHHHHHHHHHHHHHHHHHHH
Q 002728 133 YLDKATHLLVDDPKKIAWRYAKT-WLTFDVI----STIPSEAGRKFLPSALQAYGYFNMLRLWRLRRVSRLFAR 201 (887)
Q Consensus 133 y~~~~~~~lv~d~~~I~~~Yl~~-~f~~Dli----s~lP~~~~~~~~~~~~~~~~~~~llrl~rl~r~~~~~~~ 201 (887)
-.-.| -..|+++ |-.+|.+ |++-+.+... .......++.+|.||++|-+|..|.+.+
T Consensus 1181 Gl~fg-----------e~aYl~ssWN~LDgflv~vsviDilvs~a-sa~g~kILgVlrvLRlLRtlRpLRviSr 1242 (1956)
T KOG2302|consen 1181 GLYFG-----------EQAYLRSSWNVLDGFLVAVSVIDILVSQA-SAGGAKILGVLRVLRLLRTLRPLRVISR 1242 (1956)
T ss_pred hhccc-----------hHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 11111 1368865 7666654 3333222111 1112234444444555554444444433
No 151
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00031 Score=76.11 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~ 318 (887)
..+.|+||.++|++||||||..|.-+.-.+..++++.+++++..--+-.++....+
T Consensus 217 ~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~tw~e 272 (1087)
T KOG3193|consen 217 DLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQTWSE 272 (1087)
T ss_pred eeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999888888888887777777665443
No 152
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00043 Score=71.30 Aligned_cols=58 Identities=26% Similarity=0.412 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhccccccccCCcCC-------chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVN-------TRE-RIFDIFFMFFNLGLTSYLLGNMNNLVVHGT 320 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~-------~~e-~if~i~~~~~g~~l~a~~ig~~~~~i~~~~ 320 (887)
.|++|+|++++|+||||+||.++-- ..+ +.|+.+++++|+.+++-+++-+.-.+..++
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~ 251 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMN 251 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4999999999999999999987742 333 456677788999988888876666655544
No 153
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.00012 Score=75.25 Aligned_cols=52 Identities=21% Similarity=0.567 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNN 314 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~ 314 (887)
++.-||||+++.+||||||..+|.|..+++|+|++.++|+-+.-..+..++.
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gE 131 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGE 131 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHH
Confidence 4667999999999999999999999999999999999999877766665554
No 154
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.01 E-value=0.00098 Score=72.22 Aligned_cols=70 Identities=23% Similarity=0.277 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCCc------cCCCCCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHh
Q 002728 653 LLLEKIVHYGGDVT------QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQ 725 (887)
Q Consensus 653 ~~~~~Ll~~g~~~~------~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~ 725 (887)
+.+++|.+++++.| ..+..--|+||+|+.+|..+||.+||+.|+|+..+|..|+||.+++. +.++-..++
T Consensus 405 ~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 405 DSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred hHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence 34455555555443 33455779999999999999999999999999999999999999987 445544443
No 155
>PLN03223 Polycystin cation channel protein; Provisional
Probab=96.98 E-value=0.039 Score=67.46 Aligned_cols=57 Identities=16% Similarity=0.152 Sum_probs=34.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhhheee--------cccCCCCCcchhhHHHHHHHHHHHHhhe
Q 002728 73 PFEPRYRLWETFLVFLVFYTAWACPFEFG--------FLNQPSRPLAITDNVVNAIFAIDIILTF 129 (887)
Q Consensus 73 P~s~~~~~W~~~~~~~~~~~~~~~P~~~~--------f~~~~~~~~~~~~~~~~~~f~~Di~l~f 129 (887)
+.+.+..+-+++++++++|.++.--.++. +...-...|.++|+++.++.+.=|++-|
T Consensus 1170 t~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223 1170 YEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777766544431 1111245677888877777666666644
No 156
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.94 E-value=0.0037 Score=72.58 Aligned_cols=112 Identities=15% Similarity=0.283 Sum_probs=94.3
Q ss_pred HHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEE-ecCCceEEEEEecCCCeeec-hhhh---cCCC---ceeEE
Q 002728 407 QLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELIT-RKGGIEQVVGEAKPGDVVGE-LGLL---CYKP---QLFTV 478 (887)
Q Consensus 407 ~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~-~~~g~~~~~~~l~~g~~fGe-~~~l---~~~~---~~~tv 478 (887)
+++.+++...+..|++|++.|++.+.+|.+.+|.+++.. ..+|++..+....+|+.|-. .+++ .+.| .+..+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~a 189 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAA 189 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeee
Confidence 345778888999999999999999999999999999977 45689999999999977754 3443 4455 45778
Q ss_pred EEeeceEEEEeeHHHHHHHHHhccccHHHHHHHHHHHHhh
Q 002728 479 RTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKD 518 (887)
Q Consensus 479 ~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~~~lk~ 518 (887)
+|.++|.+.+++.++|.+....||+-...+++..+.++..
T Consensus 190 kA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmTRLq~ 229 (1158)
T KOG2968|consen 190 KAATDCTVARIPYTSFRESFHKNPESSIRIIQVVMTRLQR 229 (1158)
T ss_pred eeecCceEEEeccchhhhhhccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888777766554
No 157
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.012 Score=62.67 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=65.6
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccccccccC--CcCCchhhH
Q 002728 217 KLACVTLFAVH--CAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDI--HPVNTRERI 292 (887)
Q Consensus 217 ~l~~~~l~~~h--~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi--~p~~~~e~i 292 (887)
.+++..-|+++ ++|++||+|+..-+|-...=.+.+ .-.--.-...+..||-||+-|=||+|||-- +..-+.-.+
T Consensus 66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~--~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ 143 (400)
T KOG3827|consen 66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGEN--HTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPEAIF 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcC--CCcceeeccchhhhheeeeeeeeeeeccccccCccChHHHH
Confidence 34444444454 479999999976443211100000 001112234678899999999999999974 445566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002728 293 FDIFFMFFNLGLTSYLLGNMNNLVVH 318 (887)
Q Consensus 293 f~i~~~~~g~~l~a~~ig~~~~~i~~ 318 (887)
..++=+++|+++-|+++|.+-.-+..
T Consensus 144 ll~~Q~I~g~ii~afm~G~i~aKiar 169 (400)
T KOG3827|consen 144 LLVLQSILGVIINAFMVGAIFAKIAR 169 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77788889999999999988765543
No 158
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.67 E-value=0.041 Score=54.68 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=78.9
Q ss_pred HHHHHHhcceeeccCCCeE-EecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeec
Q 002728 405 LFQLVTEMKAEYFPPKEDV-ILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRL 483 (887)
Q Consensus 405 l~~l~~~~~~~~~~p~e~i-~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~ 483 (887)
+..+...-....+++|..+ ..+....+.++++.+|.+.+. ..++ ..+....+...||-...+......+..+|.+.
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~ 91 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-REEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGN 91 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-ecCC--eEEEeccCCeEeecccccCCCCceEEEEEcCc
Confidence 3455566777888999987 555555577999999999994 4443 56778899999997665555555688999999
Q ss_pred eEEEEeeHHHHHHHHHhccccHHHHHHHHH
Q 002728 484 SQLLRLNRTAFLSLVQANVGDGTIIMNNLL 513 (887)
Q Consensus 484 ~~ll~l~~~~f~~ll~~~~~~~~~i~~~l~ 513 (887)
|.++++++++|.++++++. ....+..-+.
T Consensus 92 c~~~~i~~~~~~~iie~~~-LW~~~~~~l~ 120 (207)
T PRK11832 92 CTGYHLPAKQTITLIEQNQ-LWRDAFYWLA 120 (207)
T ss_pred cEEEEeeHHHHHHHHHHhc-hHHHHHHHHH
Confidence 9999999999999998774 4444433333
No 159
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.58 E-value=0.0035 Score=40.36 Aligned_cols=29 Identities=55% Similarity=1.071 Sum_probs=26.0
Q ss_pred CCCcHhHHHHHcCCHHHHHHHHhCCCCCC
Q 002728 671 NGTTPLHVAISEGNIEIVKFLIDQGSDID 699 (887)
Q Consensus 671 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~ 699 (887)
+|.||+|+|+..|+.++++.|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 47899999999999999999999988764
No 160
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.51 E-value=0.0041 Score=39.99 Aligned_cols=29 Identities=55% Similarity=0.855 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCC
Q 002728 574 NGRTALHIAASRGHEHCVVLLLEYGADLN 602 (887)
Q Consensus 574 ~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n 602 (887)
+|.||||+|+..|+.++++.|+++|.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 36677777777777777777777776654
No 161
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.19 E-value=0.19 Score=46.88 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHh-cceeeccCCCeEEecCCC-CCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechhhh-----cC
Q 002728 399 GVSNDLLFQLVTE-MKAEYFPPKEDVILQNEA-PTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELGLL-----CY 471 (887)
Q Consensus 399 ~~s~~~l~~l~~~-~~~~~~~p~e~i~~qge~-~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l-----~~ 471 (887)
++|......++.. .+.....+|+.--.||.. .|.+-++++|.+.+.... +.+..+.+.+|..--... .+
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g----~fLH~I~p~qFlDSPEW~s~~~s~~ 89 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDG----RFLHYIYPYQFLDSPEWESLRPSED 89 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECC----EeeEeecccccccChhhhccccCCC
Confidence 6888888888877 667888999988888874 456999999999997642 467777777777543332 23
Q ss_pred CCceeEEEEeeceEEEEeeHHHHHHHHHhccccHHHHH
Q 002728 472 KPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIM 509 (887)
Q Consensus 472 ~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~~i~ 509 (887)
.....|+.|.+.|..+.-+|+.+..++..+|.....+-
T Consensus 90 ~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~ 127 (153)
T PF04831_consen 90 DKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFS 127 (153)
T ss_pred CeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHH
Confidence 34578999999999999999999999999988765543
No 162
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.05 E-value=0.0073 Score=65.72 Aligned_cols=62 Identities=29% Similarity=0.302 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Q 002728 555 GLLLHQLLRRGSDPNE------LDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAM 616 (887)
Q Consensus 555 ~~~l~~Ll~~g~~~n~------~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~ 616 (887)
.+.++.|.+.+++.|. .|.---|+||+|+.+|...||..||+.|+|+..+|..|.||...+.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 6678888888877654 2344569999999999999999999999999999999999998876
No 163
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.43 E-value=0.1 Score=51.42 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=74.7
Q ss_pred hHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHH
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPV 623 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~ 623 (887)
..|--|+..-|.+.+..+.... .+-.++|-+|.-++..+++.+|+.+= +...+| .|-......=
T Consensus 155 isledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~d--------v~~~~~~~yd 218 (284)
T PF06128_consen 155 ISLEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQD--------VASMEKELYD 218 (284)
T ss_pred ccHHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecch--------hhhcCcchhh
Confidence 3466677777776666655321 23356777777777777777777641 111111 1111112223
Q ss_pred HHHHH-HCCCCcCCCCCchhHhHHHHhCCHHHHHHHHHcC-CCCccC---CCCCCcHhHHHHHcCCHHHHHHHHhCCCC
Q 002728 624 VRILA-ENGALISSSDVGHFACTAIEQNDLLLLEKIVHYG-GDVTQL---TSNGTTPLHVAISEGNIEIVKFLIDQGSD 697 (887)
Q Consensus 624 v~~Ll-~~g~~~~~~~~~~~~~~a~~~~~~~~~~~Ll~~g-~~~~~~---d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad 697 (887)
+++++ ++|+ +..+++..+.+| ++||.+ -..|.|-|.-|+..++.+++.+||++||-
T Consensus 219 ieY~LS~h~a------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 219 IEYLLSEHSA------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHHHhhcCC------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 33333 3333 567888888888 467753 45789999999999999999999999983
No 164
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.0066 Score=69.44 Aligned_cols=47 Identities=30% Similarity=0.585 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhccccccccCCcCCchhh--------HHHHHHHHHHHHHHHHHH
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVNTRER--------IFDIFFMFFNLGLTSYLL 309 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~~~e~--------if~i~~~~~g~~l~a~~i 309 (887)
.|+.|+||+++++|||||||+.|.+...+ .+..++.++|...++...
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 48889999999999999999999999877 688888889988888777
No 165
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.97 E-value=0.061 Score=60.49 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHhhhhhhhcccCCCHHHHHHHHHhccee-eccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeec
Q 002728 387 FYSLVDQVYLFRGVSNDLLFQLVTEMKAE-YFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGE 465 (887)
Q Consensus 387 ~~~~l~~~~lf~~~s~~~l~~l~~~~~~~-~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe 465 (887)
..+++.+.|-|.+++-....+||..|... .=..|.+|...|+.-|..|.|+.|+|++..+++..+ .+.-|+.||.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~PdGk~e----~l~mGnSFG~ 354 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVKPDGKRE----ELKMGNSFGA 354 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEecCCCceE----EeecccccCC
Confidence 35677788889999999999999887643 346789999999999999999999999998766433 3566999995
Q ss_pred hhhhcCCCceeEEEE-eeceEEEEeeHHHHHHHHHh
Q 002728 466 LGLLCYKPQLFTVRT-KRLSQLLRLNRTAFLSLVQA 500 (887)
Q Consensus 466 ~~~l~~~~~~~tv~a-~~~~~ll~l~~~~f~~ll~~ 500 (887)
..-...+-..-..|+ ..+|++..+..++|-.++..
T Consensus 355 ~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ 390 (1283)
T KOG3542|consen 355 EPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT 390 (1283)
T ss_pred CCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence 432221111112233 47899999999999887753
No 166
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=94.37 E-value=0.061 Score=42.36 Aligned_cols=49 Identities=14% Similarity=0.329 Sum_probs=40.7
Q ss_pred ccHHHHHHHHhhhcCCC--ccceecCCCceeeeeeeeecCCeEEEEeCCCC
Q 002728 837 KSLQELLSIASTKFGFT--PSKILSKEGAEIDDVGLIRDDDHLFIVSDPAY 885 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~~--~~~~~~~~~~~i~~~~~i~d~~~l~~~~~~~~ 885 (887)
+|++.|++..+++.+++ ..++.+.||.+|.+++=+.||+..+-++.+.|
T Consensus 9 ~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~f 59 (60)
T PF03607_consen 9 RSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREPF 59 (60)
T ss_dssp SSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS-
T ss_pred cCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCcC
Confidence 68999999999999988 47899999999999999999988666655443
No 167
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.24 E-value=2.2 Score=50.94 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCC
Q 002728 593 LLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISS 636 (887)
Q Consensus 593 ~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~ 636 (887)
..+..+..++..+.+|.+++|.++..+..++...++++.++++.
T Consensus 594 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f 637 (727)
T KOG0498|consen 594 SLLRAGILASRFAANGRPPLHTAASRGSSDCALLLLQKPADPDF 637 (727)
T ss_pred hhhhcccccccccccCCCccccccccCccccccccCCCCCCCCc
Confidence 45566778888899999999999888877777777766664443
No 168
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.92 E-value=2.1 Score=53.13 Aligned_cols=247 Identities=16% Similarity=0.214 Sum_probs=124.0
Q ss_pred chHHHHHHHHHHHHHHHHHhhhheeecccCCCCCcchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhh
Q 002728 76 PRYRLWETFLVFLVFYTAWACPFEFGFLNQPSRPLAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKT 155 (887)
Q Consensus 76 ~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~~~~~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~ 155 (887)
+...+|-.++..+.|..+|...+-+-|...+.. +..+-++--+.++++.+=+.+.. +++. + +++++.-|...
T Consensus 791 PIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps~-~Ew~~~~~iftl~~E~vRq~~~s---e~~~-l---~~kv~v~f~d~ 862 (1381)
T KOG3614|consen 791 PIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPSM-WEWILFAWIFTLFLEEVRQIFIS---ESGL-L---PQKVRVYFADF 862 (1381)
T ss_pred chHHHHHHHHHHHHHHHHHHHHheeccCCCCCc-cchhHHHHHHHHHHHHHHHHhcC---CCcc-h---hhHHHHHHHHH
Confidence 455678777777777777777777777666632 22222222233455555444433 3321 1 56777777777
Q ss_pred hhhhhhhhccchhhhhhh--cc-chh----hHhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 002728 156 WLTFDVISTIPSEAGRKF--LP-SAL----QAYGYFNMLRLWRLRRVSRLFARLEKDRNYSYIRVRYSKLACVTLFAVHC 228 (887)
Q Consensus 156 ~f~~Dlis~lP~~~~~~~--~~-~~~----~~~~~~~llrl~rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~h~ 228 (887)
|+++|+++++-|.+...+ .+ ... -.+.+..++-.+||+-++..-+.+ ....+.+.+.+.-+++++.+
T Consensus 863 wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~rLl~~f~V~~~l------GPyI~mv~kMm~dmf~flfl 936 (1381)
T KOG3614|consen 863 WNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTVSKQL------GPYIVMVKKMMKDMFFFLFL 936 (1381)
T ss_pred HHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHHHhhheeecccc------CchhHHHHHHHHHHHHHHHH
Confidence 999999999887654432 22 111 112222233333322222221111 22223333444444443333
Q ss_pred HHHHHHH--HHh---hccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccccccccC-------------------C
Q 002728 229 AACTFYL--LAE---HYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDI-------------------H 284 (887)
Q Consensus 229 ~ac~~~~--i~~---~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi-------------------~ 284 (887)
++...+. ++. .+++...+|. ++.+-++=-||.+-+=.--|+-|. .
T Consensus 937 laV~LlsfGVarQaIl~P~e~~~w~-----------l~R~i~y~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~ 1005 (1381)
T KOG3614|consen 937 LAVVLLSFGVARQAILRPDEPRHWW-----------LFRNIFYWPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGN 1005 (1381)
T ss_pred HHHHHHHhhhhhhhhcCCCCCchHH-----------HHHHHHHHHHHHHhccccHhhhhhhcccccccCCCcccCCCCCC
Confidence 4433322 222 1233332322 234555555565532111010000 1
Q ss_pred cCCchh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH--HHHHHHHHHHHHHCCCCHHHH
Q 002728 285 PVNTRE-----RIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKF--RDTIQAASSFARRNQLPVRLQ 347 (887)
Q Consensus 285 p~~~~e-----~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~--~~~~~~~~~~m~~~~lp~~l~ 347 (887)
|....+ -+.++++.+.++++.-.+|+.+..++.+......++ -++...+.+|=.+=-||+.+-
T Consensus 1006 ~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPPfi 1075 (1381)
T KOG3614|consen 1006 PSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPPFI 1075 (1381)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCcH
Confidence 222222 234455556777888888888888877666555443 355667778877788887665
No 169
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=93.09 E-value=0.55 Score=45.23 Aligned_cols=77 Identities=13% Similarity=-0.017 Sum_probs=47.2
Q ss_pred CCCcchHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhc
Q 002728 539 RMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLG 618 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~ 618 (887)
..+...-+..|+..|-..+++..-+...+- -...++..-.||...+.|+|++.-+. .... +-.+-.-.|...
T Consensus 43 ~c~~~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~ 114 (192)
T PF03158_consen 43 SCDMWCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAK 114 (192)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCC--Cchhhhhhhhhc
Confidence 356667788888888888887776553321 13445666678888888888887332 2111 123445566666
Q ss_pred CCHHH
Q 002728 619 KHEPV 623 (887)
Q Consensus 619 ~~~~~ 623 (887)
.+.++
T Consensus 115 kDlsL 119 (192)
T PF03158_consen 115 KDLSL 119 (192)
T ss_pred cchhH
Confidence 66654
No 170
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.53 E-value=3.6 Score=53.50 Aligned_cols=78 Identities=18% Similarity=0.393 Sum_probs=54.3
Q ss_pred cchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHh-hhhhhhhhhhccchhhhhhhccchhhHhhHHHHHH
Q 002728 110 LAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYA-KTWLTFDVISTIPSEAGRKFLPSALQAYGYFNMLR 188 (887)
Q Consensus 110 ~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl-~~~f~~Dlis~lP~~~~~~~~~~~~~~~~~~~llr 188 (887)
+++.+.+.-.+|.+++++....- ++. .|. ++|.++|.+-++ +.++... .....+.+++|.+|
T Consensus 475 l~~~~~vF~~lF~~Em~~ki~al--~~~-------------~yF~~~~n~fD~~iv~-l~~~~~~-~~~~~g~svLr~fr 537 (1592)
T KOG2301|consen 475 LYLGNVVFTGLFTVEMILKIYAL--GPR-------------NYFRRGWNIFDLIIVL-LSLLELL-LKNVYGLSVLRSFR 537 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CcH-------------HHHhhhcchheEEEEe-hhhHHhc-ccchHHHHHHHHHH
Confidence 44667777888999998876532 221 455 457889988887 5554443 44556778888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 002728 189 LWRLRRVSRLFARLEK 204 (887)
Q Consensus 189 l~rl~r~~~~~~~l~~ 204 (887)
++|+.|+.+.+..++.
T Consensus 538 llRIfkl~k~wp~l~~ 553 (1592)
T KOG2301|consen 538 LLRIFKLIKSWPTLND 553 (1592)
T ss_pred HHHHHHHHHhhHHHHH
Confidence 8888888888776654
No 171
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=92.35 E-value=0.23 Score=40.54 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=41.4
Q ss_pred eEEEccccHHHHHHHHhhhcCCC--ccc-eecCCCceeee--eeeeecCCeEEEEe--CCCCC
Q 002728 831 KLVLLPKSLQELLSIASTKFGFT--PSK-ILSKEGAEIDD--VGLIRDDDHLFIVS--DPAYG 886 (887)
Q Consensus 831 kli~lp~s~~el~~~~~~~~~~~--~~~-~~~~~~~~i~~--~~~i~d~~~l~~~~--~~~~~ 886 (887)
|--+.-+|++||+.-|.++|+++ +.+ +|.+||-||++ -.-.-|+-+|.++. +.|.|
T Consensus 15 k~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVtEeyF~tLp~nT~lmvL~~gq~W~g 77 (77)
T cd06535 15 KYGVAAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVTEEYFPTLPDNTELVLLTPGQSWQG 77 (77)
T ss_pred eEeEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEehHHHHhcCCCCcEEEEEcCCCccCC
Confidence 34467789999999999999987 345 59999999964 22455666666664 66665
No 172
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=92.09 E-value=0.15 Score=41.33 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=37.9
Q ss_pred eEEEccccHHHHHHHHhhhcCCC--ccc-eecCCCceeeeee---eeecCCeEEEEe
Q 002728 831 KLVLLPKSLQELLSIASTKFGFT--PSK-ILSKEGAEIDDVG---LIRDDDHLFIVS 881 (887)
Q Consensus 831 kli~lp~s~~el~~~~~~~~~~~--~~~-~~~~~~~~i~~~~---~i~d~~~l~~~~ 881 (887)
|--+.-.|++||+.-|.++|+++ +.. ++.+||-+|||=+ -.-|+-.|.++.
T Consensus 13 k~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tLp~nt~l~~L~ 69 (74)
T smart00266 13 RKGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTLPDNTELMALE 69 (74)
T ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcCCCCcEEEEEc
Confidence 34467789999999999999997 344 6899999997643 344555555554
No 173
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.43 E-value=1.3 Score=57.23 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhhhheeecccC---CCCCcchhhHHHHHHHHHHHHhheeEEEEeCCceEEEeChhHHHHHHhhh-h
Q 002728 81 WETFLVFLVFYTAWACPFEFGFLNQ---PSRPLAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKKIAWRYAKT-W 156 (887)
Q Consensus 81 W~~~~~~~~~~~~~~~P~~~~f~~~---~~~~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~I~~~Yl~~-~ 156 (887)
...+++.+++.+....+++-....+ .+..+..+|.+...+|+++++++...- | -.. |+++ |
T Consensus 842 f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~----G--------f~~---y~rn~w 906 (1592)
T KOG2301|consen 842 FEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIAY----G--------FFF---YFRNAW 906 (1592)
T ss_pred HHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHh----H--------HHH---HHhhHH
Confidence 3445555555565555555433322 234577899999999999999986532 1 111 8877 7
Q ss_pred hhhhhhhccchhhhhhhccchhhHhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 002728 157 LTFDVISTIPSEAGRKFLPSALQAYGYFNMLRLWRLRRVSRLFARLEKDRNYSYIRVRYSKLACVTLF 224 (887)
Q Consensus 157 f~~Dlis~lP~~~~~~~~~~~~~~~~~~~llrl~rl~r~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~ 224 (887)
.++|++-++-..+....... .....+.+|.+|.+|..|..++.+....+....+.-++.++-.++
T Consensus 907 ~~lDf~Vv~vslisl~~~~~---~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~l 971 (1592)
T KOG2301|consen 907 NWLDFVVVIVSLISLIASLK---ILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLL 971 (1592)
T ss_pred hhhhHHHhhhHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence 88998876654332222222 234455555555555555555555434433333333333333333
No 174
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=90.79 E-value=0.22 Score=41.07 Aligned_cols=50 Identities=22% Similarity=0.433 Sum_probs=37.9
Q ss_pred EEEccccHHHHHHHHhhhcCCC----ccc-eecCCCceeeeee---eeecCCeEEEEe
Q 002728 832 LVLLPKSLQELLSIASTKFGFT----PSK-ILSKEGAEIDDVG---LIRDDDHLFIVS 881 (887)
Q Consensus 832 li~lp~s~~el~~~~~~~~~~~----~~~-~~~~~~~~i~~~~---~i~d~~~l~~~~ 881 (887)
--+.=.|++||+.-|.++|+++ +.+ ++-+||-+|||=+ -.-||-+|.++.
T Consensus 16 ~GV~A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~l~~L~ 73 (80)
T cd06536 16 HGVAASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLCLPPNTKFVLLA 73 (80)
T ss_pred EeEEcCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhhCCCCcEEEEEC
Confidence 3466789999999999999997 233 6999999997643 455666666664
No 175
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=90.64 E-value=0.36 Score=39.80 Aligned_cols=50 Identities=30% Similarity=0.526 Sum_probs=37.2
Q ss_pred EEEccccHHHHHHHHhhhcCCC--ccc-eecCCCceeeee---eeeecCCeEEEEe
Q 002728 832 LVLLPKSLQELLSIASTKFGFT--PSK-ILSKEGAEIDDV---GLIRDDDHLFIVS 881 (887)
Q Consensus 832 li~lp~s~~el~~~~~~~~~~~--~~~-~~~~~~~~i~~~---~~i~d~~~l~~~~ 881 (887)
--+.-.|++||+.-|.++|+++ +.. |+-+||-+|||= .-.-|+-.|.++.
T Consensus 16 ~Gv~A~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tLp~nT~lm~L~ 71 (78)
T PF02017_consen 16 KGVAASSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTLPDNTVLMLLE 71 (78)
T ss_dssp EEEEESSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCSSSSEEEEEEE
T ss_pred EeEEcCCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhCCCCCEEEEEC
Confidence 3355699999999999999998 333 788999999954 3455666666664
No 176
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=90.22 E-value=4.6 Score=39.13 Aligned_cols=138 Identities=13% Similarity=-0.019 Sum_probs=94.2
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCCCCcCCCCCchhHhHHHHhCCHHHHH
Q 002728 577 TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENGALISSSDVGHFACTAIEQNDLLLLE 656 (887)
Q Consensus 577 TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~a~~~~~~~~~~ 656 (887)
..|.-|+..+-..+.+..-+...+- -..+++..-.||...+.++|++.-+ ++...+.....-.|....+.++..
T Consensus 48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~q---nL~i~~~~~iFdIA~~~kDlsLys 121 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQ---NLHIYNPEDIFDIAFAKKDLSLYS 121 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhh---ccCCCCchhhhhhhhhccchhHHH
Confidence 4566788889888887765543211 1235677788999999999999944 444455555566777777766633
Q ss_pred H----HHHcCCCCccCCC--CCCcHhHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhc
Q 002728 657 K----IVHYGGDVTQLTS--NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQM 726 (887)
Q Consensus 657 ~----Ll~~g~~~~~~d~--~g~TpLh~Aa~~g~~~~v~~Ll~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~ 726 (887)
. +.++...-+..|. --.--|..|+..|-...+.-.|++|.+++. +++..|+.++|..+..++..
T Consensus 122 lGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 122 LGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence 2 2233221111110 001347889999999999999999998865 69999999999999988864
No 177
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=89.98 E-value=0.4 Score=39.49 Aligned_cols=51 Identities=33% Similarity=0.518 Sum_probs=38.9
Q ss_pred eEEEccccHHHHHHHHhhhcCCC--cc-ceecCCCceeeeee---eeecCCeEEEEe
Q 002728 831 KLVLLPKSLQELLSIASTKFGFT--PS-KILSKEGAEIDDVG---LIRDDDHLFIVS 881 (887)
Q Consensus 831 kli~lp~s~~el~~~~~~~~~~~--~~-~~~~~~~~~i~~~~---~i~d~~~l~~~~ 881 (887)
|--+.-.|++||+..|.+||+++ +. =++-+||-||||=+ -.-|+-.|.++.
T Consensus 15 k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tLp~nT~l~~l~ 71 (78)
T cd01615 15 KKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTLPDNTVLMLLE 71 (78)
T ss_pred eEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcCCCCcEEEEEC
Confidence 44467899999999999999994 23 37899999997643 455666666664
No 178
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=89.63 E-value=1.3 Score=37.94 Aligned_cols=72 Identities=17% Similarity=0.293 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCCcccceEEEcc----ccHHHHHHHHhh--hcCCC--ccceecCCCceeeeeeeeecCCeEEEEeCCCC
Q 002728 814 YPPRVTISCPEKGQVSGKLVLLP----KSLQELLSIAST--KFGFT--PSKILSKEGAEIDDVGLIRDDDHLFIVSDPAY 885 (887)
Q Consensus 814 ~~~rvti~~p~~~~~~gkli~lp----~s~~el~~~~~~--~~~~~--~~~~~~~~~~~i~~~~~i~d~~~l~~~~~~~~ 885 (887)
.|.||+++.-...-..|.-+.++ +|++.|++.-++ ++.+. ..++.+.+|.+|.+++=+.||++.+-.+.+.|
T Consensus 4 k~k~i~~~rNGD~~~~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~l~~l~~g~~yVa~g~e~f 83 (89)
T smart00537 4 KPKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKKVTSLDELEDGGSYVASGTEAF 83 (89)
T ss_pred cceEEEEEeCCCCCCCCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCCCEECCHHHhCcCCEEEEEcCCcc
Confidence 46688888443222355555554 579999999999 55555 36799999999999999999988777776554
No 179
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.62 E-value=24 Score=43.12 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=16.6
Q ss_pred CCcchhhHHHHHHHHHHHHhhee
Q 002728 108 RPLAITDNVVNAIFAIDIILTFF 130 (887)
Q Consensus 108 ~~~~~~~~~~~~~f~~Di~l~f~ 130 (887)
..|..+|.++.++.++-+++...
T Consensus 498 s~wN~ld~~i~~ls~~~~~~~~~ 520 (798)
T KOG3599|consen 498 SKWNWLDLAIVLLSVVLLVLMIT 520 (798)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888887777777543
No 180
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=89.50 E-value=0.35 Score=39.74 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=38.8
Q ss_pred eEEEccccHHHHHHHHhhhcCCC-cc-ceecCCCceeeeee---eeecCCeEEEEe
Q 002728 831 KLVLLPKSLQELLSIASTKFGFT-PS-KILSKEGAEIDDVG---LIRDDDHLFIVS 881 (887)
Q Consensus 831 kli~lp~s~~el~~~~~~~~~~~-~~-~~~~~~~~~i~~~~---~i~d~~~l~~~~ 881 (887)
|--+.-.|++||+.-|.++|+++ +. =++-+||-+|||=+ -.-|+-.|.++.
T Consensus 15 k~GV~A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~EeyF~tLp~nt~l~vL~ 70 (79)
T cd06538 15 RKGIMADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEEFFQALADNTVFMVLG 70 (79)
T ss_pred eEeEEcCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHHHHhhCCCCcEEEEEC
Confidence 34467799999999999999996 33 37999999997643 455666666664
No 181
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=88.89 E-value=0.42 Score=39.39 Aligned_cols=50 Identities=30% Similarity=0.415 Sum_probs=40.2
Q ss_pred EEEccccHHHHHHHHhhhcCCC-cc-ceecCCCceeeee---eeeecCCeEEEEe
Q 002728 832 LVLLPKSLQELLSIASTKFGFT-PS-KILSKEGAEIDDV---GLIRDDDHLFIVS 881 (887)
Q Consensus 832 li~lp~s~~el~~~~~~~~~~~-~~-~~~~~~~~~i~~~---~~i~d~~~l~~~~ 881 (887)
--+.=.|++||+.-|.++|+++ +. =++.+||-+|||= .-.-||-+|.++.
T Consensus 16 kGV~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~ 70 (81)
T cd06537 16 KGLTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLE 70 (81)
T ss_pred EeEEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEEC
Confidence 3356789999999999999997 33 3799999999764 4567888888875
No 182
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=88.80 E-value=0.42 Score=39.15 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=39.0
Q ss_pred EEccccHHHHHHHHhhhcCCCc---cceecCCCceeeeee---eeecCCeEEEEe
Q 002728 833 VLLPKSLQELLSIASTKFGFTP---SKILSKEGAEIDDVG---LIRDDDHLFIVS 881 (887)
Q Consensus 833 i~lp~s~~el~~~~~~~~~~~~---~~~~~~~~~~i~~~~---~i~d~~~l~~~~ 881 (887)
-+.=.|++||+.-|.++|+++. +-|+.+||-+|||=+ -.-||-+|.++.
T Consensus 17 GV~A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~LpdnT~lm~L~ 71 (78)
T cd06539 17 GVMASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMVLE 71 (78)
T ss_pred EEEecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhhCCCCCEEEEEC
Confidence 3567899999999999999852 347999999997643 566777877775
No 183
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=88.77 E-value=2.7 Score=41.70 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=31.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002728 180 AYGYFNMLRLWRLRRVSRLFAR-LEKDRNYSYIRVRYSKLACVTLFAVHCAACTFYLLAEH 239 (887)
Q Consensus 180 ~~~~~~llrl~rl~r~~~~~~~-l~~~~~~~~~~~~~~~l~~~~l~~~h~~ac~~~~i~~~ 239 (887)
..+.++++|++|+.|..+.+.. +..-.+......+...++..+++..++.++..+.-...
T Consensus 64 ~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~ 124 (200)
T PF00520_consen 64 IFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN 124 (200)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred EEEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccc
Confidence 3444455555555444442222 12222222334566667777777777777877777653
No 184
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=88.52 E-value=0.8 Score=43.48 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 002728 260 LWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARR 339 (887)
Q Consensus 260 ~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~ 339 (887)
.......++|+.+.+++.-| ++..|.+...|++.++++++++++.++..+++++.+..-. +...++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHC
Confidence 44567889999998888744 7899999999999999999999999999999999885542 22334455555544
Q ss_pred C
Q 002728 340 N 340 (887)
Q Consensus 340 ~ 340 (887)
+
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 185
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=85.56 E-value=29 Score=39.56 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhheeecc--cCCCCCcchhhHHHHHHHHHHHHhhe
Q 002728 77 RYRLWETFLVFLVFYTAWACPFEFGFL--NQPSRPLAITDNVVNAIFAIDIILTF 129 (887)
Q Consensus 77 ~~~~W~~~~~~~~~~~~~~~P~~~~f~--~~~~~~~~~~~~~~~~~f~~Di~l~f 129 (887)
+..+.+.+++++++|.++---.++.-. ..-...|.++|.++-++.++=+++.+
T Consensus 209 ~~~~~~i~f~~~~l~~~~~ei~~i~~~g~~y~~~~WN~~e~~ii~ls~~~i~~~~ 263 (425)
T PF08016_consen 209 FVLLCEILFVLFVLYFLYREIKKIRREGRAYFKSFWNWLELLIILLSLAVIVLYF 263 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 334445555555555444333332111 11134566777766555555555444
No 186
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=84.99 E-value=4.8 Score=40.10 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=62.6
Q ss_pred CcchHHHHHHHhCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHc--CCHHHHHHHHhCC-CCCCCC---CCCCCc
Q 002728 541 DLPLSLSFAAVRGDGLLLHQLLRRGSDPNELD----NNGRTALHIAASR--GHEHCVVLLLEYG-ADLNIR---DSEGSV 610 (887)
Q Consensus 541 ~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d----~~G~TpLh~Aa~~--g~~~~v~~Ll~~g-ad~n~~---d~~G~t 610 (887)
+.-++|-+|...+..+++-.|+.+- +....| ..+.--+.++.+. .+..+.+..+.+| ++||.+ -..|.|
T Consensus 178 dA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdt 256 (284)
T PF06128_consen 178 DAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDT 256 (284)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcch
Confidence 3446777888888888888888641 111111 1233345555543 3456777788887 677753 556889
Q ss_pred HHHHHHhcCCHHHHHHHHHCCCCc
Q 002728 611 PLWEAMLGKHEPVVRILAENGALI 634 (887)
Q Consensus 611 pL~~A~~~~~~~~v~~Ll~~g~~~ 634 (887)
.|--|+..++.+++.+|+++||..
T Consensus 257 MLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 257 MLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred HHHhHHhcCcHHHHHHHHHcCccc
Confidence 999999999999999999998843
No 187
>COG4709 Predicted membrane protein [Function unknown]
Probab=84.09 E-value=5.7 Score=38.50 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=59.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccc-ccccHHHHHHhc--cHHHHHHHHHHHHHhhhhhhhcccCCCHHHHH
Q 002728 330 IQAASSFARRNQLPVRLQDQMLAHLCLRHRTDS-EGLQQQEIIESL--PKAIQSSISHFLFYSLVDQVYLFRGVSNDLLF 406 (887)
Q Consensus 330 ~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~-~~~~~~~~l~~L--p~~Lr~~i~~~l~~~~l~~~~lf~~~s~~~l~ 406 (887)
++.+++|+ .++|+..++++..+|+-.|+..+ .|.+|+|+.++| |+++-.|+..+.-.+..+.-|-+++.+...+.
T Consensus 7 L~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~aii~ 84 (195)
T COG4709 7 LNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAIIA 84 (195)
T ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHHHH
Confidence 55666666 47999999999999988886543 578899999998 88888888887777777777777777775544
Q ss_pred HH
Q 002728 407 QL 408 (887)
Q Consensus 407 ~l 408 (887)
.+
T Consensus 85 ~~ 86 (195)
T COG4709 85 LI 86 (195)
T ss_pred HH
Confidence 43
No 188
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.74 E-value=1.8 Score=49.20 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=69.2
Q ss_pred HhhhhhhhcccCCCHHHHHHHHHhcceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechh
Q 002728 388 YSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELG 467 (887)
Q Consensus 388 ~~~l~~~~lf~~~s~~~l~~l~~~~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~ 467 (887)
...+.+...|.++-..-+..+|...+.+.++...++++.|+.+...|++++|.|-+.. + .+.+-.+||-.
T Consensus 36 ~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g------q---i~mp~~~fgkr- 105 (1283)
T KOG3542|consen 36 YEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG------Q---IYMPYGCFGKR- 105 (1283)
T ss_pred HHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec------c---eecCccccccc-
Confidence 3466677788888888999999999999999999999999999999999999996632 1 13344556643
Q ss_pred hhcCCCceeEEEEeeceEEEEe
Q 002728 468 LLCYKPQLFTVRTKRLSQLLRL 489 (887)
Q Consensus 468 ~l~~~~~~~tv~a~~~~~ll~l 489 (887)
+++.++...-..+.++..++
T Consensus 106 --~g~~r~~nclllq~semivi 125 (1283)
T KOG3542|consen 106 --TGQNRTHNCLLLQESEMIVI 125 (1283)
T ss_pred --cccccccceeeecccceeee
Confidence 24557777777777777776
No 189
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=78.41 E-value=11 Score=37.37 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcc-cccccHHHHHHhc--cHHHHHHHHHHHH
Q 002728 330 IQAASSFARRNQLPVRLQDQMLAHLCLRHRTD-SEGLQQQEIIESL--PKAIQSSISHFLF 387 (887)
Q Consensus 330 ~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~-~~~~~~~~~l~~L--p~~Lr~~i~~~l~ 387 (887)
++.++++++ ++|++-++++.+||+-.+... .+|.+|+++.++| |+.+-+++.....
T Consensus 7 L~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 7 LNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 667788886 599999999999998888543 4578999999998 8888888776543
No 190
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=75.79 E-value=12 Score=31.44 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=43.8
Q ss_pred cccHHHHHHHHhhhcCC--Cc-cceecCCC-ceeeeeeeeecCCeEEEEeCCCCC
Q 002728 836 PKSLQELLSIASTKFGF--TP-SKILSKEG-AEIDDVGLIRDDDHLFIVSDPAYG 886 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~--~~-~~~~~~~~-~~i~~~~~i~d~~~l~~~~~~~~~ 886 (887)
.+|++.|++.-+++++. .+ .++.+.|| ..|.+++-+.||++-+-++.+.|.
T Consensus 25 ~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~fk 79 (80)
T cd01617 25 FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPFK 79 (80)
T ss_pred hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCCC
Confidence 46899999999999996 34 67999999 889999999999998888776664
No 191
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.89 E-value=1.7e+02 Score=33.13 Aligned_cols=43 Identities=16% Similarity=0.419 Sum_probs=24.0
Q ss_pred HHhccHHHHHHHHHHH-H----HhhhhhhhcccCCCHHHHHHHHHhcc
Q 002728 371 IESLPKAIQSSISHFL-F----YSLVDQVYLFRGVSNDLLFQLVTEMK 413 (887)
Q Consensus 371 l~~Lp~~Lr~~i~~~l-~----~~~l~~~~lf~~~s~~~l~~l~~~~~ 413 (887)
.+.+|..|+..+.... | ..........+.+|+.+..+++..++
T Consensus 258 ~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh 305 (536)
T KOG0500|consen 258 YRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVH 305 (536)
T ss_pred HhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHH
Confidence 3467888888775432 2 23344445555666666655554443
No 192
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=71.88 E-value=5.7 Score=32.92 Aligned_cols=46 Identities=20% Similarity=0.366 Sum_probs=23.9
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 002728 545 SLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY 597 (887)
Q Consensus 545 ~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ 597 (887)
.+..|+..|+.++++.+++.+ .++ ...|..|+...+-+++++|++.
T Consensus 9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 355555556666665555443 111 2345555555555555555553
No 193
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=71.34 E-value=7 Score=32.36 Aligned_cols=48 Identities=19% Similarity=0.124 Sum_probs=40.8
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHHCC
Q 002728 577 TALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHEPVVRILAENG 631 (887)
Q Consensus 577 TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~~~v~~Ll~~g 631 (887)
.-|..|+..|+.|+++.+++.+ .++ ...+..|+...+.+++++|+++-
T Consensus 8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~y 55 (76)
T PF11929_consen 8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIENY 55 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHhc
Confidence 4689999999999999999865 222 45799999999999999999873
No 194
>PLN03223 Polycystin cation channel protein; Provisional
Probab=62.72 E-value=1.5e+02 Score=38.14 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002728 293 FDIFFMFFNLGLTSYLLGNMNNLVVHG 319 (887)
Q Consensus 293 f~i~~~~~g~~l~a~~ig~~~~~i~~~ 319 (887)
|..+++++.+++.-++|+.|.+-+...
T Consensus 1399 FfSFILLV~FILLNMFIAII~DSFsEV 1425 (1634)
T PLN03223 1399 FYSYNIFVFMILFNFLLAIICDAFGEV 1425 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777777776666543
No 195
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=61.48 E-value=93 Score=38.07 Aligned_cols=51 Identities=14% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhheeecccC-CCCCcchhhHHHHHHHHHHHHhheeEE
Q 002728 82 ETFLVFLVFYTAWACPFEFGFLNQ-PSRPLAITDNVVNAIFAIDIILTFFLA 132 (887)
Q Consensus 82 ~~~~~~~~~~~~~~~P~~~~f~~~-~~~~~~~~~~~~~~~f~~Di~l~f~ta 132 (887)
+.++.+++..+++....+-.-.++ ....+.+.++...++|+++++++.+..
T Consensus 1444 d~fit~ii~LnvVtms~ehyqqp~sldealkycny~ft~vfV~EaV~klvaf 1495 (1956)
T KOG2302|consen 1444 DQFITFIICLNVVTMSEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAF 1495 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccHHHHhhhcceeeeehhHHHHHHHHHHH
Confidence 455555555566655554322111 124567788888999999999987654
No 196
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=60.99 E-value=35 Score=27.21 Aligned_cols=44 Identities=23% Similarity=0.438 Sum_probs=31.8
Q ss_pred eeccCCCeEEecCCCCC-eEEEEEeceEEEEEecCCceEEEEEecCCCee
Q 002728 415 EYFPPKEDVILQNEAPT-DLYILVTGAMELITRKGGIEQVVGEAKPGDVV 463 (887)
Q Consensus 415 ~~~~p~e~i~~qge~~~-~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~f 463 (887)
..++||+..-....... +++++++|++.+.. +|+ ...+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~--~~~---~~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV--DGE---RVELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE--TTE---EEEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE--ccE---EeEccCCEEE
Confidence 35788887666665666 89999999999884 332 3457888865
No 197
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=59.04 E-value=20 Score=41.11 Aligned_cols=97 Identities=16% Similarity=0.249 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHH
Q 002728 218 LACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFF 297 (887)
Q Consensus 218 l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~ 297 (887)
|-+.+.+.+|..|...|++-...+..-- -+.+ .-.+++-...+-.++||+-..+..-|-|.-+|.+-.-++..+++
T Consensus 572 LW~lv~~SVhvVal~lYlLDrfSPFgRF-k~~d---s~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVW 647 (993)
T KOG4440|consen 572 LWLLVGLSVHVVALMLYLLDRFSPFGRF-KVND---SEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVW 647 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccce-eecc---CccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHH
Confidence 3455677889999999988765443210 0000 01122333456779999999999889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002728 298 MFFNLGLTSYLLGNMNNLVVH 318 (887)
Q Consensus 298 ~~~g~~l~a~~ig~~~~~i~~ 318 (887)
.=|.+++.|--.+|+++.++-
T Consensus 648 aGFaMIiVASYTANLAAFLVL 668 (993)
T KOG4440|consen 648 AGFAMIIVASYTANLAAFLVL 668 (993)
T ss_pred hhhheeeehhhhhhhhhheee
Confidence 988888888888888887643
No 198
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=48.47 E-value=40 Score=30.12 Aligned_cols=46 Identities=15% Similarity=0.342 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc---------cccccHHHHHHhccHHHHHHHHHH
Q 002728 340 NQLPVRLQDQMLAHLCLRHRTD---------SEGLQQQEIIESLPKAIQSSISHF 385 (887)
Q Consensus 340 ~~lp~~l~~ri~~~~~~~~~~~---------~~~~~~~~~l~~Lp~~Lr~~i~~~ 385 (887)
.-||.++|..|...+.-.-... ....+.-.+|..||+.||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 4689999999999775543221 123556689999999999998653
No 199
>COG3212 Predicted membrane protein [Function unknown]
Probab=47.48 E-value=23 Score=33.39 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=28.8
Q ss_pred EccccHHHHHHHHhhhcCCCccceecCCCceeeeeeeeecCCeEEE
Q 002728 834 LLPKSLQELLSIASTKFGFTPSKILSKEGAEIDDVGLIRDDDHLFI 879 (887)
Q Consensus 834 ~lp~s~~el~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~d~~~l~~ 879 (887)
-.+.|++++.+||.++.+ | +|+||+|-+|++.++-
T Consensus 80 ~~iis~~ea~~iAl~~~~----------G-~v~dieLe~~~g~~vY 114 (144)
T COG3212 80 STIISLEEAKEIALKRVP----------G-KVDDIELEEDNGRLVY 114 (144)
T ss_pred ccccCHHHHHHHHHHHCC----------C-ceeEEEEeccCCEEEE
Confidence 378899999999999873 4 8888888888887764
No 200
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=46.32 E-value=24 Score=28.47 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=33.0
Q ss_pred cccHHHHHHHHhhhcCCCccc-eecCCCceeeeeee-----eecCCeEEEEeC
Q 002728 836 PKSLQELLSIASTKFGFTPSK-ILSKEGAEIDDVGL-----IRDDDHLFIVSD 882 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----i~d~~~l~~~~~ 882 (887)
-.|+++|.+..+++.|+++++ .+.-.|...+|=.. |.||+.|+++.+
T Consensus 19 ~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 19 QATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 369999999999999998853 23333544443222 589999998864
No 201
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=44.41 E-value=3.1e+02 Score=33.59 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=37.1
Q ss_pred HHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002728 269 YWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVH 318 (887)
Q Consensus 269 yw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~ 318 (887)
-|+++-=-||- --.|..+..++.+.++.+|++++.|.-.+|+++.+..
T Consensus 617 lwaLvFnnsVp--v~nPKgtTskiMv~VWAfFavifLAsYTANLAAfMIq 664 (1258)
T KOG1053|consen 617 LWALVFNNSVP--VENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 664 (1258)
T ss_pred HHHHHhCCCcC--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36766544442 3456677899999999999999999999999987643
No 202
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=44.09 E-value=20 Score=40.78 Aligned_cols=53 Identities=25% Similarity=0.435 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002728 263 RYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLV 316 (887)
Q Consensus 263 ~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i 316 (887)
-.+.|+||++..+.--| -||.|.+..++|..-++.+|.+++.+--.+|+++.+
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFL 647 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFL 647 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHHH
Confidence 35679999999998888 799999999999999999999999988888888865
No 203
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=43.19 E-value=22 Score=28.92 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=29.8
Q ss_pred ccHHHHHHHHhhhcCCCccc-eecCCCceeeee------eeeecCCeEEE
Q 002728 837 KSLQELLSIASTKFGFTPSK-ILSKEGAEIDDV------GLIRDDDHLFI 879 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~------~~i~d~~~l~~ 879 (887)
.|+.+|.+..+++.|++++. .+.-.|-..+|= -=|.+||.|+|
T Consensus 20 ~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 20 LELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 68999999999999998753 333334444331 12678888876
No 204
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=43.03 E-value=50 Score=27.39 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=33.2
Q ss_pred ccHHHHHHHHhhhcCCCccc--------eecCCCceeeeeeeeecCCeEEEEeCCC
Q 002728 837 KSLQELLSIASTKFGFTPSK--------ILSKEGAEIDDVGLIRDDDHLFIVSDPA 884 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~~~~~--------~~~~~~~~i~~~~~i~d~~~l~~~~~~~ 884 (887)
.|+.||.+..++++|+++.+ ++. |+ .+.|.. |.||+.|+++....
T Consensus 22 ~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~g-i~~~~~i~l~~~~~ 74 (78)
T cd01804 22 ETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLG-LGDGSKLTLVPTVE 74 (78)
T ss_pred CHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcC-CCCCCEEEEEeecc
Confidence 68999999999999988753 332 23 455554 78999999997553
No 205
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=42.71 E-value=81 Score=38.26 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002728 264 YVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHG 319 (887)
Q Consensus 264 Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~ 319 (887)
+..|+|.++.++..-| ++..|.+..-+++..++.++++++.++-.+++++++...
T Consensus 382 ~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt~~ 436 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLTVP 436 (656)
T ss_pred cccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3446788888888888 679999999999999999999999999999999988543
No 206
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=42.11 E-value=49 Score=24.71 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=34.0
Q ss_pred cccHHHHHHHHhhhcCCCccc-eecCCCceeeeee-----eeecCCeEEEEe
Q 002728 836 PKSLQELLSIASTKFGFTPSK-ILSKEGAEIDDVG-----LIRDDDHLFIVS 881 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~~-----~i~d~~~l~~~~ 881 (887)
..|++++++...+++|.++.. .+-.+|...++-. .+.+|+.+.++.
T Consensus 17 ~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 17 GTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 689999999999999987643 3445565555444 678888888764
No 207
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=40.74 E-value=1.2e+02 Score=25.65 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=42.5
Q ss_pred eEEEEcCCCC-cccceEEEccccHHHHHHHHhhhcCCCccc----ee-cCCCceeeeeee---------eecCCeEEEEe
Q 002728 817 RVTISCPEKG-QVSGKLVLLPKSLQELLSIASTKFGFTPSK----IL-SKEGAEIDDVGL---------IRDDDHLFIVS 881 (887)
Q Consensus 817 rvti~~p~~~-~~~gkli~lp~s~~el~~~~~~~~~~~~~~----~~-~~~~~~i~~~~~---------i~d~~~l~~~~ 881 (887)
.|+|.|+... ...-|-+-.-.|+.||...-...+|+++++ +. ++++..+.+.+- ++||+.|.++-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 5778888653 334456667789999999999999999864 33 355555544421 56777776653
No 208
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=39.81 E-value=52 Score=29.38 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcc------------cccccHHHHHHhccHHHHHHHHHHHHHh
Q 002728 341 QLPVRLQDQMLAHLCLRHRTD------------SEGLQQQEIIESLPKAIQSSISHFLFYS 389 (887)
Q Consensus 341 ~lp~~l~~ri~~~~~~~~~~~------------~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~ 389 (887)
-||.+++..|...+...-+.. ...--..++|..||++||.+|...-...
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~ 68 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRE 68 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHH
Confidence 489999999876443322110 0112235899999999999997665443
No 209
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=39.26 E-value=5.5e+02 Score=29.55 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002728 296 FFMFFNLGLTSYLLGNMNNLV 316 (887)
Q Consensus 296 ~~~~~g~~l~a~~ig~~~~~i 316 (887)
++.+.|.++.+....-+....
T Consensus 173 ~i~~~g~Glv~iP~~l~~~~~ 193 (471)
T PF04791_consen 173 FIILLGYGLVAIPRDLWRSSN 193 (471)
T ss_pred HHHHHhccHHHHHHHHHHhcc
Confidence 444667777777766555443
No 210
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=37.66 E-value=84 Score=29.61 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=38.2
Q ss_pred hcceeeccCCCeEEecCC-CCCeEEEEEeceEEEEEe-cCCceEEEEEecCCCeee
Q 002728 411 EMKAEYFPPKEDVILQNE-APTDLYILVTGAMELITR-KGGIEQVVGEAKPGDVVG 464 (887)
Q Consensus 411 ~~~~~~~~p~e~i~~qge-~~~~ly~i~~G~v~i~~~-~~g~~~~~~~l~~g~~fG 464 (887)
.+....+.||...-..-. ...++++|++|...+... .+|.++....+.+||.+=
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 344556788887655443 356899999999988763 335566677899999874
No 211
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.40 E-value=2.1e+02 Score=31.90 Aligned_cols=61 Identities=11% Similarity=0.234 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002728 260 LWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLGNMNNLVVHGT 320 (887)
Q Consensus 260 ~~~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~ 320 (887)
..--|+-+|-+++..+.+++-++....-..-..+++++.++++++|-|.|..++..++-.+
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ 157 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSN 157 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 3446888888898888888755553333334778888888999999999998888775443
No 212
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=37.32 E-value=4.9e+02 Score=30.06 Aligned_cols=54 Identities=26% Similarity=0.540 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHH-HHHHhhhccccccccCCcCCchhhHHHHHHHHH
Q 002728 222 TLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTS-IYWSIATLTTTGYGDIHPVNTRERIFDIFFMFF 300 (887)
Q Consensus 222 ~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~s-lyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~ 300 (887)
+.++.+|..++||..++ .|...+-| ++|+.. .|++......|.|..+....
T Consensus 123 i~~~~~W~~~~FYv~~e---------------------lw~~~vvS~lFW~fa-------ndi~t~~qakRfy~l~~~ga 174 (472)
T TIGR00769 123 IAILRIWSFALFYVMAE---------------------LWGSVVLSLLFWGFA-------NQITTIDEAKRFYALFGLGA 174 (472)
T ss_pred HHHHhhhhHHHHHHHHH---------------------HHHHHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHHH
Confidence 34667899999998875 46678888 999997 47778888999998887765
Q ss_pred HHH
Q 002728 301 NLG 303 (887)
Q Consensus 301 g~~ 303 (887)
+++
T Consensus 175 nlg 177 (472)
T TIGR00769 175 NVA 177 (472)
T ss_pred HHH
Confidence 543
No 213
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=36.79 E-value=58 Score=26.86 Aligned_cols=43 Identities=16% Similarity=0.381 Sum_probs=30.0
Q ss_pred ccHHHHHHHHhhhcCCCccc-ee------cCCCceeeeeeeeecCCeEEE
Q 002728 837 KSLQELLSIASTKFGFTPSK-IL------SKEGAEIDDVGLIRDDDHLFI 879 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~~~~~-~~------~~~~~~i~~~~~i~d~~~l~~ 879 (887)
.|+++|.+...++.|++|.. .+ .+|+..+.+-.+-.+||.|+|
T Consensus 23 ~TV~~lK~kI~~~~gip~~~QrL~~G~~L~dD~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 23 MTVAQLKDKVFLDYGFPPAVQRWVIGQRLARDQETLYSHGIRTNGDSAFL 72 (75)
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEcCCeeCCCcCCHHHcCCCCCCCEEEE
Confidence 58999999999999998843 33 223334445555558888876
No 214
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=36.64 E-value=76 Score=26.03 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=28.2
Q ss_pred ccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeee
Q 002728 417 FPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVG 464 (887)
Q Consensus 417 ~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fG 464 (887)
..||..-..-. .+++.+|++|.+.+... +|.. ..+++||.|=
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it~~-~G~~---~~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTITDE-DGET---VTFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEEET-TTEE---EEEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEEEC-CCCE---EEEcCCcEEE
Confidence 35555444332 28888999999988764 4433 4578998873
No 215
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=35.58 E-value=1.4e+02 Score=28.75 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=42.6
Q ss_pred cCCCeE-EecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceEEEEeeHH
Q 002728 418 PPKEDV-ILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRLNRT 492 (887)
Q Consensus 418 ~p~e~i-~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ll~l~~~ 492 (887)
.||+-. +..++ .++++++++|.+.+-...+|+.+ .-.+++||+|=--. + .+.+.++.+.|..+.+.+.
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~~~-~v~L~eGd~flvP~---g--vpHsP~r~~~t~~LvIE~~ 104 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGKRE-DVPIREGDIFLLPP---H--VPHSPQRPAGSIGLVIERK 104 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcCCcEE-EEEECCCCEEEeCC---C--CCcccccCCCcEEEEEEeC
Confidence 444433 34433 68999999999988665555422 35689999884322 1 2234444577777777765
No 216
>PRK06437 hypothetical protein; Provisional
Probab=35.55 E-value=54 Score=26.36 Aligned_cols=41 Identities=10% Similarity=0.409 Sum_probs=31.6
Q ss_pred ccHHHHHHHHhhhcCCCccc-eecCCCceeeeeeeeecCCeEEEEe
Q 002728 837 KSLQELLSIASTKFGFTPSK-ILSKEGAEIDDVGLIRDDDHLFIVS 881 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~~~i~d~~~l~~~~ 881 (887)
.|+.+|+ +++|+++.. ++-.+|.-|..=..++|||++-++.
T Consensus 21 ~tv~dLL----~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 21 LTVNDII----KDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred CcHHHHH----HHcCCCCccEEEEECCEECCCceEcCCCCEEEEEe
Confidence 4788888 457887644 4557788888888899999998875
No 217
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=34.68 E-value=10 Score=43.64 Aligned_cols=60 Identities=30% Similarity=0.544 Sum_probs=45.7
Q ss_pred HHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Q 002728 549 AAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEG 608 (887)
Q Consensus 549 Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G 608 (887)
|+.++-...+-.|+++|+.++..|..|.||+|+++..|..++.+.++.+..+.+.....|
T Consensus 403 ~~~~~~ss~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~~ 462 (605)
T KOG3836|consen 403 AALNNSSSLVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVNG 462 (605)
T ss_pred hhhcCCccceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhcccccc
Confidence 455555556677888888899889999999999999999999988887765555444333
No 218
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=34.59 E-value=5.2e+02 Score=26.49 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccHHHHH
Q 002728 292 IFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEII 371 (887)
Q Consensus 292 if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l 371 (887)
++.++..+.=...++|+++.+++++..-- ...+.+++.+...- .+......-.++
T Consensus 71 v~~~la~L~lll~~~~lfs~v~~~IAapF----------------------ng~lAEkvE~~l~g---~~~~d~~~~~l~ 125 (250)
T COG2981 71 LLWILAVLLLLLVFAFLFSTVANLIAAPF----------------------NGLLAEKVEKRLTG---ETPPDPGGVGLM 125 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhHHHHHHHHHHcC---CCCCCcchhhhh
Confidence 44455555556778888888888885431 12233333332211 111122234568
Q ss_pred HhccHHHHHHHHHHH
Q 002728 372 ESLPKAIQSSISHFL 386 (887)
Q Consensus 372 ~~Lp~~Lr~~i~~~l 386 (887)
+++|..+..|.+.-.
T Consensus 126 ~dipR~l~re~kkL~ 140 (250)
T COG2981 126 KDIPRALAREWKKLG 140 (250)
T ss_pred hhhHHHHHHHHHHHH
Confidence 888888888876544
No 219
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=32.95 E-value=2.3e+02 Score=22.02 Aligned_cols=47 Identities=6% Similarity=0.186 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHH
Q 002728 291 RIFDIFFMFFNLGLTSYLLGNMNNLVVHGTART---RKFRDTIQAASSFA 337 (887)
Q Consensus 291 ~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~---~~~~~~~~~~~~~m 337 (887)
.++.+.+..+-+++++.+.+.+--++.+.+.+. ....+|++.+-+.+
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTLFIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 344443333333333333344444444433222 24666776665543
No 220
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=30.93 E-value=2.2e+02 Score=26.20 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=39.6
Q ss_pred ceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeechhhhcCCCceeEEEEeeceEEEEe
Q 002728 413 KAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGELGLLCYKPQLFTVRTKRLSQLLRL 489 (887)
Q Consensus 413 ~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~~~l~~~~~~~tv~a~~~~~ll~l 489 (887)
....+.||...-..-....++++|++|.+++....+|++ ..+.+||++---+ +.|. .++..+.+.++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~g~~---~~L~aGD~i~~~~---~~~H--~~~N~e~~~~l~v 106 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLATGEV---HPIRPGTMYALDK---HDRH--YLRAGEDMRLVCV 106 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCCCEE---EEeCCCeEEEECC---CCcE--EEEcCCCEEEEEE
Confidence 445678887554322222479999999999872222332 4578999875221 3333 3333366665554
No 221
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=30.54 E-value=21 Score=41.06 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=26.1
Q ss_pred hHHHHhCCHHHHHHHHHcCCCCccCCCCCCcHhHHHHHcCCH
Q 002728 644 CTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNI 685 (887)
Q Consensus 644 ~~a~~~~~~~~~~~Ll~~g~~~~~~d~~g~TpLh~Aa~~g~~ 685 (887)
+..+......++..++.++...+..+.+|.|+||.+...++.
T Consensus 141 ~~~~s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~ 182 (503)
T KOG0513|consen 141 RILVSGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENL 182 (503)
T ss_pred eeeecCccccceeecccccccchhhhhcCCceeeeeccCCCc
Confidence 334444455555555555556666666777788877777666
No 222
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.17 E-value=74 Score=38.48 Aligned_cols=41 Identities=10% Similarity=0.115 Sum_probs=25.3
Q ss_pred hhhhcCCCceeEEEEeeceEEEEeeHHHHHHHHHhccccHH
Q 002728 466 LGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGT 506 (887)
Q Consensus 466 ~~~l~~~~~~~tv~a~~~~~ll~l~~~~f~~ll~~~~~~~~ 506 (887)
-|++.-..-+..+.+.+.-.++.++|+.=.+.+..+|....
T Consensus 559 ~GIikTLd~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~ 599 (1202)
T KOG0292|consen 559 SGIIKTLDKPIYITKVKGNKVFCLNRDGEIECLTIDPTEYR 599 (1202)
T ss_pred cceEEecccceEEEEeeCCEEEEEecCCCeEEEeechHHHH
Confidence 34443333455666677778888888876666666655443
No 223
>PRK07668 hypothetical protein; Validated
Probab=29.47 E-value=1.5e+02 Score=30.88 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHHHhcccccccHHHHHHhccHHHHHHHHHH
Q 002728 324 RKFRDTIQAASSFARRNQLPVRLQDQMLA-HLCLRHRTDSEGLQQQEIIESLPKAIQSSISHF 385 (887)
Q Consensus 324 ~~~~~~~~~~~~~m~~~~lp~~l~~ri~~-~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~ 385 (887)
++.++-+.+++.|++..+++++-++.+.. +...-.+.+++|.+.++++..=|++..+++...
T Consensus 4 keNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~yA~EL~~~ 66 (254)
T PRK07668 4 KEGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKEYANELVKE 66 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHHHHHHHhcc
Confidence 34555688889999999999988877766 444444566789999999999777777776654
No 224
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=28.41 E-value=1.2e+02 Score=34.16 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCcccccccCCccCCchHHHHHHHHHHHhhhcccccc--ccCCcCCchhhHHH
Q 002728 217 KLACVTLFAVHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGY--GDIHPVNTRERIFD 294 (887)
Q Consensus 217 ~l~~~~l~~~h~~ac~~~~i~~~~~~~~~~Wi~~~~~~~~~~~~~~~Y~~slyw~i~tltTvGY--Gdi~p~~~~e~if~ 294 (887)
++...+.++.-..+.+.+++.+. .+......+.....+++..+++++|.|| +|...-++.-+++.
T Consensus 198 ~~~~~~~~~l~~~~~i~~~l~~~-------------~~~~~~~~~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll 264 (390)
T TIGR00933 198 KVRLFVTFLLLAIGFILFLLLER-------------GNTLYSYSFGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLL 264 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-------------cccccCCCHHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHH
Q ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q 002728 295 IFFMFFNLGL-----------TSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHL 354 (887)
Q Consensus 295 i~~~~~g~~l-----------~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~ 354 (887)
++.|++|..- ++.++..+...+.+......-+..++ ..+.++++....+..++
T Consensus 265 ~~lMfIGg~~gSTaGGiK~~r~~vl~~~~~~~~~~~~~~~~v~~~~i-------~~~~v~~~~~~~~~~~~ 328 (390)
T TIGR00933 265 LLLMFIGGCSGSTAGGIKTTTFAILLKQVYREIRRGIHPRIIFSRRI-------GGKTIDKAILISVWSFF 328 (390)
T ss_pred HHHHHHcCCCcccCCchHHHHHHHHHHHHHHHHHccCCCceEEeEEE-------CCeehHHHHHHHHHHHH
No 225
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=27.73 E-value=52 Score=36.50 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=38.2
Q ss_pred CCCeeechhhhcCCCceeEEEEeec-eEEEEeeHHHHHHHHHhc
Q 002728 459 PGDVVGELGLLCYKPQLFTVRTKRL-SQLLRLNRTAFLSLVQAN 501 (887)
Q Consensus 459 ~g~~fGe~~~l~~~~~~~tv~a~~~-~~ll~l~~~~f~~ll~~~ 501 (887)
+||-||..++....|+.+++...++ |.+++.++.+|..++++.
T Consensus 1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhh
Confidence 5899999999999999999887765 899999999999988765
No 226
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=27.43 E-value=1.4e+02 Score=20.50 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHHH
Q 002728 329 TIQAASSFARRNQLP-----VRLQDQMLAHL 354 (887)
Q Consensus 329 ~~~~~~~~m~~~~lp-----~~l~~ri~~~~ 354 (887)
+..++.++++.++|| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 356788999999999 57888887764
No 227
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=26.81 E-value=1.2e+02 Score=23.97 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=27.8
Q ss_pred ccHHHHHHHHhhhcCCCccc-eecCCCceeeee----eeeecCCeEEEEe
Q 002728 837 KSLQELLSIASTKFGFTPSK-ILSKEGAEIDDV----GLIRDDDHLFIVS 881 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~----~~i~d~~~l~~~~ 881 (887)
.|+++|++. +++++.. ++--+|.-|..- ..++|||++-+++
T Consensus 15 ~tv~~ll~~----l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 15 ATLAELLEE----LGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred CCHHHHHHH----cCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 478888854 5565533 344556555555 5899999999875
No 228
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.69 E-value=8.1e+02 Score=27.80 Aligned_cols=22 Identities=9% Similarity=-0.059 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhhhhccchhhhh
Q 002728 150 WRYAKTWLTFDVISTIPSEAGR 171 (887)
Q Consensus 150 ~~Yl~~~f~~Dlis~lP~~~~~ 171 (887)
+-|...+-++-+-..+||-.++
T Consensus 445 kWy~~~~~~~~~gG~LPFgsIf 466 (593)
T KOG1277|consen 445 KWYRSPLVIMLMGGFLPFGSIF 466 (593)
T ss_pred cccccchHHHHhhccCccchhh
Confidence 4566666667777889986543
No 229
>PRK09108 type III secretion system protein HrcU; Validated
Probab=26.26 E-value=5.8e+02 Score=28.16 Aligned_cols=63 Identities=6% Similarity=0.097 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 002728 289 RERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQML 351 (887)
Q Consensus 289 ~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~ 351 (887)
...++.++..++..++.++++-.+..+.-+.....++.|=..+++++-.|...=+++++.|++
T Consensus 178 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrR 240 (353)
T PRK09108 178 AQILWTVLMKLLAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERK 240 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 344555666666666666666666666655544444444444555555555555555555543
No 230
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=26.09 E-value=1e+02 Score=25.60 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=31.3
Q ss_pred cccHHHHHHHHhhhcCCCccc-ee--cCCCceeeeeee-----eecCCeEEEEe
Q 002728 836 PKSLQELLSIASTKFGFTPSK-IL--SKEGAEIDDVGL-----IRDDDHLFIVS 881 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~~~~~-~~--~~~~~~i~~~~~-----i~d~~~l~~~~ 881 (887)
..|+.||.+..++++|+++++ .+ .-+|...+|=.. |.||+.|+++-
T Consensus 22 ~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 22 SMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred CCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 378999999999999998754 33 223433333222 67888888774
No 231
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=26.02 E-value=2.8e+02 Score=31.58 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=22.4
Q ss_pred HHhhhheeecccCCCCCcchhhHHHHHHHHHHHHhheeEE
Q 002728 93 AWACPFEFGFLNQPSRPLAITDNVVNAIFAIDIILTFFLA 132 (887)
Q Consensus 93 ~~~~P~~~~f~~~~~~~~~~~~~~~~~~f~~Di~l~f~ta 132 (887)
+++.|=...|.. .++.++|++..+=|.+++++..+.+
T Consensus 261 ~~~~P~k~~F~k---~pLNIIDllAIlPFYielll~~~~~ 297 (477)
T KOG3713|consen 261 FLVAPNKLEFFK---SPLNIIDLLAILPFYLELLLTLFGG 297 (477)
T ss_pred HHcCchHHHHHh---CcchHHHHHHHHHHHHHHHHHHhcc
Confidence 344444443432 4466777777777777777776655
No 232
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.90 E-value=3.8e+02 Score=26.38 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhccccccccCCcCCchhhHHHHHHHHHHHHHHHHHHH
Q 002728 262 VRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLTSYLLG 310 (887)
Q Consensus 262 ~~Y~~slyw~i~tltTvGYGdi~p~~~~e~if~i~~~~~g~~l~a~~ig 310 (887)
-.|.+-+|+|++.-+|-.=.|..+.+..=|-.+..=.+++.++.+.+++
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999888999999999888888888888777776664
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=25.44 E-value=50 Score=33.13 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=23.6
Q ss_pred HhCCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHhcCCCC
Q 002728 692 IDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 692 l~~Gadv~~~d~~g~Tpl~~A~~~g~~~i~~lL~~~~~~ 730 (887)
++.||-.|..|....||=++|.+.|+..+-+.|.+.+.+
T Consensus 2 le~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 2 LEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred cccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 455666666666666666666666666666666655544
No 234
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=24.59 E-value=2.1e+02 Score=29.08 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=41.1
Q ss_pred cceeeccCCCeEEecCCCCCeEEEEEeceEEEEEecCCceEEEEEecCCCeeech----hhhcCCC---------ceeEE
Q 002728 412 MKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGEL----GLLCYKP---------QLFTV 478 (887)
Q Consensus 412 ~~~~~~~p~e~i~~qge~~~~ly~i~~G~v~i~~~~~g~~~~~~~l~~g~~fGe~----~~l~~~~---------~~~tv 478 (887)
++...+.+|+..-..-.......+++.|++.+... |+.||++ +.|.+.| +.+++
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~-------------g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~v 97 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAH-------------GSTFGEIGTRMSVFERKPPDSVYVPAGSAFSV 97 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeec-------------cchHhhcccccccccCCCCCeEEecCCceEEE
Confidence 44556677776655554455566777998877542 3444432 2444433 67888
Q ss_pred EEeeceEEEEeeH
Q 002728 479 RTKRLSQLLRLNR 491 (887)
Q Consensus 479 ~a~~~~~ll~l~~ 491 (887)
.|.+++++..-+.
T Consensus 98 tA~t~~~vAvC~A 110 (270)
T COG3718 98 TATTDLEVAVCSA 110 (270)
T ss_pred EeecceEEEEEeC
Confidence 8888887665543
No 235
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=24.48 E-value=2.5e+02 Score=30.41 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHhheeEEEEeC
Q 002728 113 TDNVVNAIFAIDIILTFFLAYLDK 136 (887)
Q Consensus 113 ~~~~~~~~f~~Di~l~f~tay~~~ 136 (887)
+-+++|++-++-+++++.|.-..+
T Consensus 287 imNiIDiVaI~PyFitlgtela~q 310 (507)
T KOG1545|consen 287 IMNIIDIVAIIPYFITLGTELAEQ 310 (507)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHh
Confidence 456778888888899998875544
No 236
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=24.37 E-value=99 Score=25.16 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=36.8
Q ss_pred cccHHHHHHHHhhhcCC---CccceecCCCceeee---eeeeecCCeEEEEe
Q 002728 836 PKSLQELLSIASTKFGF---TPSKILSKEGAEIDD---VGLIRDDDHLFIVS 881 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~---~~~~~~~~~~~~i~~---~~~i~d~~~l~~~~ 881 (887)
+.|+.+|++.-.+++.- ....++..+|.-|++ =..++|||.+.++.
T Consensus 21 ~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~p 72 (77)
T PF02597_consen 21 GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILP 72 (77)
T ss_dssp TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEE
T ss_pred CCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEEC
Confidence 67899999999999852 133467777888888 78899999999986
No 237
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.14 E-value=2.3 Score=48.64 Aligned_cols=75 Identities=19% Similarity=0.140 Sum_probs=55.8
Q ss_pred hHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHhcCCH
Q 002728 544 LSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGKHE 621 (887)
Q Consensus 544 ~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad~n~~d~~G~tpL~~A~~~~~~ 621 (887)
+.+|++...+. .+.++....++|....+..+++|.+......+++..++.++..-+.++..|+|+||.+...++.
T Consensus 108 ~~~~~~~~~~~---~~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~ 182 (503)
T KOG0513|consen 108 TDILWKFNLEK---APKLLEKFDDPNFIKGDLNLALRILVSGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENL 182 (503)
T ss_pred cchhhhhhhcC---CCccccccccccccccccccceeeeecCccccceeecccccccchhhhhcCCceeeeeccCCCc
Confidence 34444443332 3455666666665556778899999999999999888887777777888999999999988776
No 238
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=23.95 E-value=2.3e+02 Score=23.00 Aligned_cols=38 Identities=24% Similarity=0.575 Sum_probs=27.4
Q ss_pred ccceEEEcccc--HHHHHHHHhhhcCCCc-cc-eecCCCcee
Q 002728 828 VSGKLVLLPKS--LQELLSIASTKFGFTP-SK-ILSKEGAEI 865 (887)
Q Consensus 828 ~~gkli~lp~s--~~el~~~~~~~~~~~~-~~-~~~~~~~~i 865 (887)
.+-|++-+|++ +.-.++-|+|+|++++ +. +.+.||--|
T Consensus 15 ~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GI 56 (76)
T PF03671_consen 15 LPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGI 56 (76)
T ss_dssp S-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE
T ss_pred CcceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCccc
Confidence 46677778875 6788999999999986 43 677778655
No 239
>PRK08156 type III secretion system protein SpaS; Validated
Probab=23.60 E-value=7.2e+02 Score=27.56 Aligned_cols=59 Identities=5% Similarity=-0.003 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002728 292 IFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQM 350 (887)
Q Consensus 292 if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 350 (887)
+...+..++..++.++++-.+..+.-+.....++-+=..+++++-.|...=++.++.|+
T Consensus 174 ~~~~~~~l~~~~~~~~lvia~~D~~~Qr~~~~k~lkMSkqEvKdE~Ke~EGdP~iK~r~ 232 (361)
T PRK08156 174 WRELLVKLVLTFLACALIVLILDFIAEYFLHMKDMKMDKQEVKREYKEQEGNPEIKSKR 232 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 44444445555555555555555554443333333333445555555555555555544
No 240
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=23.43 E-value=2.1e+02 Score=23.02 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=32.8
Q ss_pred cccHHHHHHHHhhhcCCCccc-eecCCCceeeeee-----eeecCCeEEEEeC
Q 002728 836 PKSLQELLSIASTKFGFTPSK-ILSKEGAEIDDVG-----LIRDDDHLFIVSD 882 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~~-----~i~d~~~l~~~~~ 882 (887)
-.|+++|.+.-+++.|+++.+ .+.-+|...+|=. =|.||+.|.++-.
T Consensus 20 ~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 20 TDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred CCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 468999999999999999854 3334455543322 2778888888753
No 241
>PRK07440 hypothetical protein; Provisional
Probab=23.34 E-value=1.9e+02 Score=23.43 Aligned_cols=42 Identities=29% Similarity=0.495 Sum_probs=30.9
Q ss_pred cccHHHHHHHHhhhcCCCccc-eecCCCceee----eeeeeecCCeEEEEe
Q 002728 836 PKSLQELLSIASTKFGFTPSK-ILSKEGAEID----DVGLIRDDDHLFIVS 881 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~----~~~~i~d~~~l~~~~ 881 (887)
+-|+.+|++ ++|+++.. ++--+|.-|. +=..++|||++=+++
T Consensus 19 ~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 19 GTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred CCCHHHHHH----HcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 457999985 77887755 4555566666 556799999998875
No 242
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=23.12 E-value=1.7e+02 Score=23.05 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=31.9
Q ss_pred ceEEEcc--ccHHHHHHHHhhhcCCCccc-eecCCCceee----eeeeeecCCeEEEEe
Q 002728 830 GKLVLLP--KSLQELLSIASTKFGFTPSK-ILSKEGAEID----DVGLIRDDDHLFIVS 881 (887)
Q Consensus 830 gkli~lp--~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~----~~~~i~d~~~l~~~~ 881 (887)
|+..-+| -|+.+|++ .+|+++.. .+.-+|.-|. +=..++|||.+=+++
T Consensus 7 G~~~~~~~~~tl~~lL~----~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 7 GEPRELPDGESVAALLA----REGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred CeEEEcCCCCCHHHHHH----hcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 3444443 47888875 47777654 3445565565 667899999998775
No 243
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=23.04 E-value=1.9e+02 Score=23.02 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=29.9
Q ss_pred cccHHHHHHHHhhhcCCCccc-eecCCCceeeeeee-----eecCCeEEEE
Q 002728 836 PKSLQELLSIASTKFGFTPSK-ILSKEGAEIDDVGL-----IRDDDHLFIV 880 (887)
Q Consensus 836 p~s~~el~~~~~~~~~~~~~~-~~~~~~~~i~~~~~-----i~d~~~l~~~ 880 (887)
..|+.+|.+..+++.|+++.. .+.-+|...+|=.. |.||+.|.++
T Consensus 20 ~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 20 EITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 478999999999999998743 22223544443222 6677777765
No 244
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=22.80 E-value=97 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=33.0
Q ss_pred ccHHHHHHHHhhhcCC-----CccceecCCCceeeeeeeeecCCeEEEEe
Q 002728 837 KSLQELLSIASTKFGF-----TPSKILSKEGAEIDDVGLIRDDDHLFIVS 881 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~i~d~~~l~~~~ 881 (887)
.|+.||++.-.++++- ....++-.+|--|..=..++|||.+.+++
T Consensus 26 ~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 26 ATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred CcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 6899999999888753 22234555566665557899999999986
No 245
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=22.68 E-value=2.2e+02 Score=23.14 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=30.6
Q ss_pred ccHHHHHHHHhhhcCC--Cccc-eecCCCceeeeee-----eeecCCeEEEEe
Q 002728 837 KSLQELLSIASTKFGF--TPSK-ILSKEGAEIDDVG-----LIRDDDHLFIVS 881 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~--~~~~-~~~~~~~~i~~~~-----~i~d~~~l~~~~ 881 (887)
.|+.+|.+.-.++.|+ ++.+ .+.-+|...+|=. =|.||+.|+++-
T Consensus 21 ~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 21 DTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 6899999999999998 6654 3333454444321 267888888763
No 246
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=22.59 E-value=89 Score=24.06 Aligned_cols=19 Identities=16% Similarity=0.539 Sum_probs=16.3
Q ss_pred HHHHhccHHHHHHHHHHHH
Q 002728 369 EIIESLPKAIQSSISHFLF 387 (887)
Q Consensus 369 ~~l~~Lp~~Lr~~i~~~l~ 387 (887)
++++.||++|+.++..++-
T Consensus 6 elfqkLPDdLKrEvldY~E 24 (65)
T COG5559 6 ELFQKLPDDLKREVLDYIE 24 (65)
T ss_pred HHHHHCcHHHHHHHHHHHH
Confidence 6889999999999987653
No 247
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=22.28 E-value=1.9e+02 Score=22.78 Aligned_cols=48 Identities=25% Similarity=0.520 Sum_probs=30.6
Q ss_pred ceEEEccc--cHHHHHHHHhhhcCCCccc-eecCCCceee----eeeeeecCCeEEEEe
Q 002728 830 GKLVLLPK--SLQELLSIASTKFGFTPSK-ILSKEGAEID----DVGLIRDDDHLFIVS 881 (887)
Q Consensus 830 gkli~lp~--s~~el~~~~~~~~~~~~~~-~~~~~~~~i~----~~~~i~d~~~l~~~~ 881 (887)
|+-.-+|. |+.+|++ ++++++.. ++-.+|.-|. +=..++|||++-++.
T Consensus 5 g~~~~~~~~~tv~~ll~----~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 5 GEPVEVEDGLTLAALLE----SLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CeEEEcCCCCcHHHHHH----HcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 45555555 6888886 56676644 3444454443 224799999998875
No 248
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=22.17 E-value=5.5e+02 Score=25.03 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcc--hhHHHHHHHHHHHHHHHHHCCCCHHHH
Q 002728 289 RERIFDIFFMFFNLGLTSYLLGNM-NNLVVHGT--ARTRKFRDTIQAASSFARRNQLPVRLQ 347 (887)
Q Consensus 289 ~e~if~i~~~~~g~~l~a~~ig~~-~~~i~~~~--~~~~~~~~~~~~~~~~m~~~~lp~~l~ 347 (887)
.+-++++..+.++++..+|++|-. ++-+-... ....++..|-.+.-+-+++|++++.-|
T Consensus 74 lDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDps~q 135 (173)
T PF08566_consen 74 LDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDPSSQ 135 (173)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 456777777888888888888743 33332222 234556666667777778888877544
No 249
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=22.08 E-value=7.8e+02 Score=27.24 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002728 292 IFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQM 350 (887)
Q Consensus 292 if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 350 (887)
+...+..++..++.++++-.+..+..+.....++.+=..+++++-+|...=++.++.|+
T Consensus 188 ~~~~~~~l~~~~~~~~~via~~D~~~q~~~~~k~lkMSkqEVKdE~Ke~EGdP~iK~r~ 246 (358)
T PRK13109 188 ILTVAIRLVSAVAIATIVLVALDLVWARFHWRRSLRMTKQEIKDEHKQAEGDPSVKARL 246 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 44444455555555555555666655444433333334455555555555555555554
No 250
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.73 E-value=8e+02 Score=27.18 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q 002728 289 RERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQM 350 (887)
Q Consensus 289 ~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri 350 (887)
...++..+..++..++.++++-.+..+..+.....++.|=..+++++-.|...=++.++.|+
T Consensus 183 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rr 244 (359)
T PRK05702 183 LGHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRI 244 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 34445555555555555555555556554443333333333344444444444444444443
No 251
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=21.26 E-value=8.3e+02 Score=26.94 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 002728 290 ERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQML 351 (887)
Q Consensus 290 e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~ 351 (887)
..++..+..++..++.++++-.+..+.-+.....++-|=..+++++-.|...=+++++.|++
T Consensus 177 ~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR 238 (349)
T PRK12721 177 PVVSTLIFWLWGGLLACYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRR 238 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 33445555555555555555555565544443333333334455555555555555555543
No 252
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=20.40 E-value=9.8e+02 Score=26.35 Aligned_cols=63 Identities=11% Similarity=0.054 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 002728 289 RERIFDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQML 351 (887)
Q Consensus 289 ~e~if~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~ 351 (887)
...+...++.++..++.++++-.+..+.-+.....++.|=..+++++-.|...=++.++.|++
T Consensus 176 ~~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR 238 (347)
T TIGR00328 176 ITNFLDIAKSLLILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIR 238 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 334445555555555555555555555544444334334344555555555555555555543
No 253
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=20.32 E-value=8.8e+02 Score=27.17 Aligned_cols=59 Identities=8% Similarity=-0.021 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q 002728 293 FDIFFMFFNLGLTSYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQML 351 (887)
Q Consensus 293 f~i~~~~~g~~l~a~~ig~~~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~ 351 (887)
..++..++..++.++++-.+..++-+.....++.+=..+++++-+|...=++.++.|++
T Consensus 187 ~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~r~R 245 (386)
T PRK12468 187 LHLIIFCGLVVVLGLSPMVGFDVFYQITSHIKKLRMTKQDIRDEFKNQEGDPHVKGRIR 245 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 33444444444555555555565544444333334344555555555555555555543
No 254
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=20.24 E-value=89 Score=26.43 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=30.8
Q ss_pred ccHHHHHHHHhhhcCC-C-----------ccceecCCCceeeeee--eeecCCeEEEEe
Q 002728 837 KSLQELLSIASTKFGF-T-----------PSKILSKEGAEIDDVG--LIRDDDHLFIVS 881 (887)
Q Consensus 837 ~s~~el~~~~~~~~~~-~-----------~~~~~~~~~~~i~~~~--~i~d~~~l~~~~ 881 (887)
.|+.||++...+++.- . +...+..+|--|++-+ .+.|||.+.++.
T Consensus 25 ~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 25 KTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred CCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 5899999999988851 0 1122444555565555 899999998875
Done!