Query 002728
Match_columns 887
No_of_seqs 659 out of 5018
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 17:11:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002728.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1445-1449//hhsearch_pdb/002728hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 1.0 1 1 318.9 9.0 345 71-519 3-352 (355)
2 3utm_A Tankyrase-1; tankyrase, 1.0 1 1 253.1 25.3 201 533-733 49-308 (351)
3 1oy3_D Transcription factor in 1.0 1 1 252.5 22.8 197 537-733 4-253 (282)
4 3ljn_A Hypothetical protein; a 1.0 1 1 252.1 19.7 192 537-730 48-269 (364)
5 2xai_A ASB-9, ankyrin repeat a 1.0 1 1 251.8 23.9 193 540-733 1-194 (261)
6 3d9h_A CDNA FLJ77766, highly s 1.0 1 1 248.9 25.0 198 535-733 52-250 (285)
7 2fo1_E LIN-12 protein; beta-ba 1.0 1 1 248.5 22.0 195 536-730 160-371 (373)
8 1yyh_A HN1;, notch 1, ankyrin 1.0 1 1 247.9 24.0 194 537-730 52-248 (253)
9 4b93_B Ankyrin repeat domain-c 1.0 1 1 246.7 15.4 184 539-724 49-235 (269)
10 3aji_A 26S proteasome non-ATPa 1.0 1 1 245.5 20.1 194 536-729 34-229 (231)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=1.00 E-value=1 Score=318.89 Aligned_cols=345 Identities=19% Similarity=0.254 Sum_probs=258.3
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC---CCCCHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEECHHH
Q ss_conf 8779932789989999999999986401010113899---9911056899999999787530478983892289837369
Q 002728 71 ISPFEPRYRLWETFLVFLVFYTAWACPFEFGFLNQPS---RPLAITDNVVNAIFAIDIILTFFLAYLDKATHLLVDDPKK 147 (887)
Q Consensus 71 i~P~s~~~~~W~~~~~~~~~~~~~~~P~~~~f~~~~~---~~~~~~~~~~~~~f~~Di~l~f~tay~~~~~~~lv~d~~~ 147 (887)
+.|+|+.. +.+++++++.++++...+. +..... ..+..++.++.++|++|+++++..+ +.
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~---~~---------- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALT-IPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR---RA---------- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CS----------
T ss_pred CCCHHHHH---HHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CC----------
T ss_conf 88436799---9999999999999999973-6133256899999989677799999998901212---32----------
Q ss_pred HHHHHH-HHHHHHHHHHC-CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Q ss_conf 999985-33244364503-5514565212113557669889999999999999999997101139999999999999999
Q 002728 148 IAWRYA-KTWLTFDVIST-IPSEAGRKFLPSALQAYGYFNMLRLWRLRRVSRLFARLEKDRNYSYIRVRYSKLACVTLFA 225 (887)
Q Consensus 148 I~~~Yl-~~~F~~Dlis~-lP~~~~~~~~~~~~~~~~~~~llrl~rl~ri~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~ 225 (887)
.+.|. ..|+++|++++ +|+...... ..+..+++|++|++|+.|..+.++.+......+ ...+..++..++++
T Consensus 66 -~~~~~~~~~~i~Dl~~i~~p~~~~~~~---~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~--~~~l~~~~~~~~~~ 139 (355)
T 3beh_A 66 -GVVRDRTPKIAIDVLAVLVPLAAFLLD---GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANE--ARNLIGVTTLFGVV 139 (355)
T ss_dssp -CSSCCCHHHHHHHHHHHHHHHHHHHSC---CSGGGGGGGGGGGSHHHHTCSSHHHHHHHHHHT--HHHHHHHHHHHHHH
T ss_pred -CCEECCCCCHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_conf -341033832587999898899999833---503678999999999999889999999999999--99999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999997734269998622355577667713778899999875411113224677687013699999999999999
Q 002728 226 VHCAACTFYLLAEHYRDPKGTWIGQTLGDFKQQSLWVRYVTSIYWSIATLTTTGYGDIHPVNTRERIFDIFFMFFNLGLT 305 (887)
Q Consensus 226 ~h~~aci~~~i~~~~~~~~~~w~~~~~~~~~~~~~~~~Y~~slywai~tltTvGyGdi~p~~~~e~if~i~~~i~g~~l~ 305 (887)
++++||++|.++... +.+.+..|.+|+||+++||||+||||++|.|..|+++++++|++|++++
T Consensus 140 ~~~~a~~~~~~e~~~----------------~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~ 203 (355)
T 3beh_A 140 LFAVALAAYVIERDI----------------QPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIF 203 (355)
T ss_dssp HHHHHHHHHHHHTTT----------------CHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----------------CCCCCCCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999998753677----------------8843220999999998643445899878898219999999999999999
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999999821144899999999999999988999799999999999977302346628999973419999998997
Q 002728 306 SYLLGNMNNLVVHGTARTRKFRDTIQAASSFARRNQLPVRLQDQMLAHLCLRHRTDSEGLQQQEIIESLPKAIQSSISHF 385 (887)
Q Consensus 306 a~~ig~i~~~i~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~~~~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~ 385 (887)
++++|.+++.+.+... + + ++.
T Consensus 204 ~~~~~~i~~~~~~~~~------~--------------------~--~~~------------------------------- 224 (355)
T 3beh_A 204 GLWAGILATGFYQEVR------R--------------------G--DFV------------------------------- 224 (355)
T ss_dssp HHHHHHHHHHHHHHHH------H--------------------H--HHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHH------H--------------------H--HHC-------------------------------
T ss_conf 9999999999899998------8--------------------7--650-------------------------------
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCEEEECCCCCCEEEEEEECEEEEEEECCCCEEEEEEECCCCEEEC
Q ss_conf 77956535510368999999999872441201677728961888972899996159999933880479887169984300
Q 002728 386 LFYSLVDQVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAMELITRKGGIEQVVGEAKPGDVVGE 465 (887)
Q Consensus 386 l~~~~i~~~~lf~~~s~~~l~~l~~~~~~~~~~pge~I~~~ge~~~~ly~i~~G~v~~~~~~~g~~~~~~~l~~G~~fGe 465 (887)
.+.+.++++++|++++++.+.+++..++.+.|+|||.|+++||.++++|+|.+|.++++..+ ...+++|++|||
T Consensus 225 ~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~------~~~l~~G~~fGe 298 (355)
T 3beh_A 225 RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN------PVELGPGAFFGE 298 (355)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHHHHCEEEEECCCCEEEECCCCCCEEEEEEEEEEEEEECC------EEEECCCCEEEE
T ss_conf 15212104622112999999999985368897979999928995765999996489999888------048989999932
Q ss_pred HHHHCCCCCEEEEEEEECEEEEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 333158992329999002589984089999999705360799999999987440
Q 002728 466 LGLLCYKPQLFTVRTKRLSQLLRLNRTAFLSLVQANVGDGTIIMNNLLQHLKDL 519 (887)
Q Consensus 466 ~~~l~~~~~~~tv~a~~~~~ll~l~r~~f~~il~~~~~~~~~~~~~l~~~l~~~ 519 (887)
.+++.+.|++++++|.++|+++.+++++|.++++++|++...+.+.+.+++++.
T Consensus 299 ~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~rl~~~ 352 (355)
T 3beh_A 299 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALERRGAA 352 (355)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHCCCCCCEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 699579996169999860899998599999999879899999999999988753
No 2
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=1.00 E-value=1 Score=253.06 Aligned_cols=201 Identities=24% Similarity=0.237 Sum_probs=185.5
Q ss_pred HHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 88622899950579999970999999999974999997899999099999981999999999847999788999999288
Q 002728 533 QKLARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPL 612 (887)
Q Consensus 533 ~~la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL 612 (887)
..+...+..+.||||.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 49 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L 128 (351)
T 3utm_A 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128 (351)
T ss_dssp TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 88655799998899999985999999999976999976179998089999977889999999977999997788899899
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCC------------------------------------------------------
Q ss_conf 99995699999999997999867788------------------------------------------------------
Q 002728 613 WEAMLGKHEPVVRILAENGALISSSD------------------------------------------------------ 638 (887)
Q Consensus 613 ~~A~~~~~~~iv~~Ll~~ga~~~~~~------------------------------------------------------ 638 (887)
|+|+..++.+++++|+++|++++..+
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (351)
T 3utm_A 129 HEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCC
T ss_conf 99997499999999997699986336789862377753325899986404217999998324999999997000133578
Q ss_pred --CCHHHHHHHHH---CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf --76048699981---8999999999749997668889993759999819899999999689999989999999889998
Q 002728 639 --VGHFACTAIEQ---NDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALAD 713 (887)
Q Consensus 639 --~~~~~~~a~~~---~~~~~l~~Ll~~g~~v~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~Gadv~~~d~~g~T~l~~A~ 713 (887)
..++++.|+.. +..++++.|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|+
T Consensus 209 ~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~ 288 (351)
T 3utm_A 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288 (351)
T ss_dssp TTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 88998899999971755899999999759996776999998999999859898999999879998775999998899999
Q ss_pred HCCCHHHHHHHHCCCCCCCC
Q ss_conf 63997899998339999999
Q 002728 714 HQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 714 ~~g~~~i~~lL~~~~~~~~~ 733 (887)
..|+.+++++|.+++++...
T Consensus 289 ~~~~~~~v~~Ll~~gad~~~ 308 (351)
T 3utm_A 289 LAGHLQTCRLLLSYGSDPSI 308 (351)
T ss_dssp HHTCHHHHHHHHHTTCCTTC
T ss_pred HCCCHHHHHHHHHCCCCCCC
T ss_conf 82859999999984999888
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=252.49 Aligned_cols=197 Identities=22% Similarity=0.244 Sum_probs=182.9
Q ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Q ss_conf 2899950579999970999999999974999---9978999990999999819999999998479997889999992889
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSD---PNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLW 613 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~---~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~ 613 (887)
..+.++.||||.||..|+.++++.|++.|++ ++..|..|+||||+|+..|+.++++.|+++|++++.+|..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 63899980999999768788999998547774310064788987999999869999999999869998877989999999
Q ss_pred HHHHCCCHHHHHHHHHCCCCC-----------------------------------------------CCC--CCCHHHH
Q ss_conf 999569999999999799986-----------------------------------------------778--8760486
Q 002728 614 EAMLGKHEPVVRILAENGALI-----------------------------------------------SSS--DVGHFAC 644 (887)
Q Consensus 614 ~A~~~~~~~iv~~Ll~~ga~~-----------------------------------------------~~~--~~~~~~~ 644 (887)
+|+..++.+++++|+++++.. +.. ...++++
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 99873884055764234777722467777523434585011002220135653000002335554057776789968999
Q ss_pred HHHHHCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf 99981899999999974999766888-99937599998198999999996899999899999998899986399789999
Q 002728 645 TAIEQNDLLLLEKIVHYGGDVTQLTS-NGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQIL 723 (887)
Q Consensus 645 ~a~~~~~~~~l~~Ll~~g~~v~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~Gadv~~~d~~g~T~l~~A~~~g~~~i~~l 723 (887)
.|+..++.+++++|+++|++++..+. .|+||||+|+..|+.+++++|+++|||++.+|..|.||+++|+..|+.+++++
T Consensus 164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~ 243 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243 (282)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHH
T ss_conf 99974999999999983898788887789689999988398999999997599986644699978999998499179999
Q ss_pred HHCCCCCCCC
Q ss_conf 8339999999
Q 002728 724 LQMKPEPKKA 733 (887)
Q Consensus 724 L~~~~~~~~~ 733 (887)
|.++++....
T Consensus 244 Ll~~ga~~~~ 253 (282)
T 1oy3_D 244 LRAHGAPEPE 253 (282)
T ss_dssp HHHTTCCCCC
T ss_pred HHHCCCCCCC
T ss_conf 9984998576
No 4
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=252.13 Aligned_cols=192 Identities=18% Similarity=0.106 Sum_probs=161.9
Q ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC----CCCCCC---------
Q ss_conf 2899950579999970999999999974999997899999099999981999999999847----999788---------
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEY----GADLNI--------- 603 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~----ga~~n~--------- 603 (887)
..+.++.||||.|+..|+.++++.|++.|++++ +.+|+||||+|+..|+.++++.|+++ |++++.
T Consensus 48 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 125 (364)
T 3ljn_A 48 IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDERE 125 (364)
T ss_dssp CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCC
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHCCHHH
T ss_conf 248999969999998598999999997799754--568998899998869988999999713335877788986302676
Q ss_pred --------CCCCCCCHHHHHHHCC--CHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHCCHHHHHHHHHCCCC-----CC
Q ss_conf --------9999992889999569--99999999979998677887--6048699981899999999974999-----76
Q 002728 604 --------RDSEGSVPLWEAMLGK--HEPVVRILAENGALISSSDV--GHFACTAIEQNDLLLLEKIVHYGGD-----VT 666 (887)
Q Consensus 604 --------~d~~g~tpL~~A~~~~--~~~iv~~Ll~~ga~~~~~~~--~~~~~~a~~~~~~~~l~~Ll~~g~~-----v~ 666 (887)
+|..|.||||.|+..| +.+++++|+++|++++..+. .++++.|+..++.+++++|+++|++ +|
T Consensus 126 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 205 (364)
T 3ljn_A 126 VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD 205 (364)
T ss_dssp EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT
T ss_pred HHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 65403566798898789999974996699999999769997362889998999999829899999998605541235552
Q ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 6888999375999981989999999968999998999999988999863997899998339999
Q 002728 667 QLTSNGTTPLHVAISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 667 ~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~Gadv~~~d~~g~T~l~~A~~~g~~~i~~lL~~~~~~ 730 (887)
..|..|+||||+|+..|+.++|++|+++|||++.+|..|.||+++|+..|+.+++++|+++++.
T Consensus 206 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 269 (364)
T 3ljn_A 206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV 269 (364)
T ss_dssp CCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCC
T ss_conf 3288998099999975988999999986999888799999889999983829999999974880
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=1.00 E-value=1 Score=251.78 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=183.1
Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 99505799999709999999999749999978999990999999819999999998479997889999992889999569
Q 002728 540 MDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAMLGK 619 (887)
Q Consensus 540 ~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~~~ 619 (887)
+++.||||.||..|+.++++.|++.|+++|..|.+|+||||+|+..|+.++++.|+++|++++.+|..|.||||.|+..|
T Consensus 1 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 99777999999829899999999779999985899987799999849999999999879998877888998799999869
Q ss_pred CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
Q ss_conf 99999999979998677887-60486999818999999999749997668889993759999819899999999689999
Q 002728 620 HEPVVRILAENGALISSSDV-GHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQGSDI 698 (887)
Q Consensus 620 ~~~iv~~Ll~~ga~~~~~~~-~~~~~~a~~~~~~~~l~~Ll~~g~~v~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~Gadv 698 (887)
+.+++++|+++|++++..+. .++++.|+..++.++++.|+++|++++..|..|.||||.|+..|+.+++++|+++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 160 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160 (261)
T ss_dssp CHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 89999999987899998999999899999848699999999869987867788998899999809899999999869998
Q ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCC
Q ss_conf 98999999988999863997899998339999999
Q 002728 699 DKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 699 ~~~d~~g~T~l~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
+. |..|.||+|+|+..|+.+++++|.+++++...
T Consensus 161 ~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~ 194 (261)
T 2xai_A 161 NQ-GKGQDSPLHAVARTASEELACLLMDFGADTQA 194 (261)
T ss_dssp TC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 87-99999869999881989999999985979987
No 6
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=248.89 Aligned_cols=198 Identities=24% Similarity=0.312 Sum_probs=186.9
Q ss_pred HHCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Q ss_conf 62289995057999997099999999997499999789999909999998199999999984799978899999928899
Q 002728 535 LARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWE 614 (887)
Q Consensus 535 la~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~ 614 (887)
+...+.++.|+||.||..|+.++++.|++.|+++|..|.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||.
T Consensus 52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131 (285)
T ss_dssp TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 45887567888999998689999999997799998728899889999998874999999997789988878999989999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 9956999999999979998677887-604869998189999999997499976688899937599998198999999996
Q 002728 615 AMLGKHEPVVRILAENGALISSSDV-GHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693 (887)
Q Consensus 615 A~~~~~~~iv~~Ll~~ga~~~~~~~-~~~~~~a~~~~~~~~l~~Ll~~g~~v~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 693 (887)
|+..++.+++++|+++|++++..+. .++++.|+..++.++++.|+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 211 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 211 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 99869899999999779998878899789999998688999999997799988757889988999998390999999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCC
Q ss_conf 8999998999999988999863997899998339999999
Q 002728 694 QGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEPKKA 733 (887)
Q Consensus 694 ~Gadv~~~d~~g~T~l~~A~~~g~~~i~~lL~~~~~~~~~ 733 (887)
+|++++. |..|.||+++|+..|+.+++++|.+++++...
T Consensus 212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~ 250 (285)
T 3d9h_A 212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQA 250 (285)
T ss_dssp TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCC
T ss_conf 7899887-98999899999880999999999977999877
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=248.48 Aligned_cols=195 Identities=23% Similarity=0.325 Sum_probs=178.8
Q ss_pred HCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC---CCCCCCCCCCCCHH
Q ss_conf 228999505799999709999999999749999978999990999999819999999998479---99788999999288
Q 002728 536 ARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYG---ADLNIRDSEGSVPL 612 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~g---a~~n~~d~~g~tpL 612 (887)
...+.++.||||.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|++++ ++++..|..|.|||
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred CCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCHHHCCCCCCCHH
T ss_conf 67789998989999986949999999977999761589898799999877998899999845765567322377899799
Q ss_pred HHHHHCC---CHHHHHHHHHCCCCCCCC----------CCCHHHHHHHHHCCHHHHHHHHHCC-CCCCCCCCCCCCHHHH
Q ss_conf 9999569---999999999799986778----------8760486999818999999999749-9976688899937599
Q 002728 613 WEAMLGK---HEPVVRILAENGALISSS----------DVGHFACTAIEQNDLLLLEKIVHYG-GDVTQLTSNGTTPLHV 678 (887)
Q Consensus 613 ~~A~~~~---~~~iv~~Ll~~ga~~~~~----------~~~~~~~~a~~~~~~~~l~~Ll~~g-~~v~~~d~~g~T~Lh~ 678 (887)
|+|+..+ +.+++++|+++|++++.. ...++++.|+..++.+++++|+++| ++++.+|..|+||||+
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~ 319 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99998378344999999997799765555444575554588899999980999999999973689866769899989999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 9981989999999968999998999999988999863997899998339999
Q 002728 679 AISEGNIEIVKFLIDQGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 679 A~~~g~~~~v~~Ll~~Gadv~~~d~~g~T~l~~A~~~g~~~i~~lL~~~~~~ 730 (887)
|+..|+.++|++|+++||+++.+|..|.||+++|+..|+.+++++|.++++.
T Consensus 320 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 9986899999999976998547798999999999985988899998733734
No 8
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=1.00 E-value=1 Score=247.95 Aligned_cols=194 Identities=26% Similarity=0.275 Sum_probs=184.0
Q ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CCCCCCCCCCCHHHHH
Q ss_conf 289995057999997099999999997499999789999909999998199999999984799-9788999999288999
Q 002728 537 RGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGA-DLNIRDSEGSVPLWEA 615 (887)
Q Consensus 537 ~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga-~~n~~d~~g~tpL~~A 615 (887)
..+.++.|+||.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.++++.|+++++ +++.++..|.||||.|
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A 131 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 62899984999999869999999999759997887999998999999869889999999758987545688998699999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 95699999999997999867788--7604869998189999999997499976688899937599998198999999996
Q 002728 616 MLGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693 (887)
Q Consensus 616 ~~~~~~~iv~~Ll~~ga~~~~~~--~~~~~~~a~~~~~~~~l~~Ll~~g~~v~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 693 (887)
+..++.+++++|+++|++++..+ ..++++.|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 211 (253)
T 1yyh_A 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211 (253)
T ss_dssp HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 88483999999997699988809999989999998688899999997699999868999999999998799999999998
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCCC
Q ss_conf 8999998999999988999863997899998339999
Q 002728 694 QGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPEP 730 (887)
Q Consensus 694 ~Gadv~~~d~~g~T~l~~A~~~g~~~i~~lL~~~~~~ 730 (887)
+||+++.+|..|.||+++|+..|+.+++++|......
T Consensus 212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 6999330024899889999885878999999988621
No 9
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=246.69 Aligned_cols=184 Identities=23% Similarity=0.298 Sum_probs=105.7
Q ss_pred CCCCCHHHHHHHHHCCH-HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99950579999970999-99999997499999789999909999998199999999984799978899999928899995
Q 002728 539 RMDLPLSLSFAAVRGDG-LLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEAML 617 (887)
Q Consensus 539 ~~~~~~~l~~Aa~~g~~-~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A~~ 617 (887)
+..+.++++.|+..++. .+++.|++.|+++|..|.+|+||||+||..|+.+++++|++.|++++.++..|.||++.|+.
T Consensus 49 ~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~ 128 (269)
T 4b93_B 49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128 (269)
T ss_dssp --------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86677899999984998999999998799988769999999999998496999999986599867557899983300001
Q ss_pred CCCHHHHHHHHHCCCCCCCCCC--CHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Q ss_conf 6999999999979998677887--60486999818999999999749997668889993759999819899999999689
Q 002728 618 GKHEPVVRILAENGALISSSDV--GHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLIDQG 695 (887)
Q Consensus 618 ~~~~~iv~~Ll~~ga~~~~~~~--~~~~~~a~~~~~~~~l~~Ll~~g~~v~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~G 695 (887)
.++.+++++|++.|++++..+. .++++.|+..|+.+++++|+++|+++|.++..|+||||+|+..|+.++|++|+++|
T Consensus 129 ~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G 208 (269)
T 4b93_B 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHG 208 (269)
T ss_dssp HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 27299999999879998877899999999999878999999999787997832147883899999868899999999878
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 99998999999988999863997899998
Q 002728 696 SDIDKPDIHGWTPRALADHQGQEDIQILL 724 (887)
Q Consensus 696 adv~~~d~~g~T~l~~A~~~g~~~i~~lL 724 (887)
||++.+|..|+||+++|+..+ +++++|
T Consensus 209 ad~~~~d~~G~TpL~~A~~~~--~i~~lL 235 (269)
T 4b93_B 209 ASVQVLNKRQRTAVDCAEQNS--KIMELL 235 (269)
T ss_dssp CCSCCCCTTSCCSGGGSCTTC--HHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHCC--CHHHHH
T ss_conf 899886999999999988378--499999
No 10
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=1.00 E-value=1 Score=245.46 Aligned_cols=194 Identities=28% Similarity=0.359 Sum_probs=175.5
Q ss_pred HCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 22899950579999970999999999974999997899999099999981999999999847999788999999288999
Q 002728 536 ARGRMDLPLSLSFAAVRGDGLLLHQLLRRGSDPNELDNNGRTALHIAASRGHEHCVVLLLEYGADLNIRDSEGSVPLWEA 615 (887)
Q Consensus 536 a~~~~~~~~~l~~Aa~~g~~~~l~~Ll~~g~~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL~~A 615 (887)
...+.++.|+||.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||.|
T Consensus 34 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 35788899899999985969999999980899987689999999999982989999999975999887789999799999
Q ss_pred HHCCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 95699999999997999867788--7604869998189999999997499976688899937599998198999999996
Q 002728 616 MLGKHEPVVRILAENGALISSSD--VGHFACTAIEQNDLLLLEKIVHYGGDVTQLTSNGTTPLHVAISEGNIEIVKFLID 693 (887)
Q Consensus 616 ~~~~~~~iv~~Ll~~ga~~~~~~--~~~~~~~a~~~~~~~~l~~Ll~~g~~v~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~ 693 (887)
+..++.+++++|+++|++++..+ ..++++.|+..++.++++.|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus 114 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 98597999999998697988728899859999998498899999996699855448899888999987799889999997
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 899999899999998899986399789999833999
Q 002728 694 QGSDIDKPDIHGWTPRALADHQGQEDIQILLQMKPE 729 (887)
Q Consensus 694 ~Gadv~~~d~~g~T~l~~A~~~g~~~i~~lL~~~~~ 729 (887)
+|+|++.+|..|.||+++|...++.++.++|.++++
T Consensus 194 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 194 QGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 799877878999989999983578999999726524
Done!