Query 002729
Match_columns 887
No_of_seqs 1671 out of 3810
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:56:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3E-161 7E-166 1225.8 69.9 880 2-886 51-931 (966)
2 COG3914 Spy Predicted O-linked 100.0 5E-103 1E-107 804.2 48.5 521 345-887 74-605 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 1E-96 2E-101 773.9 21.9 350 537-887 1-458 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 1.1E-46 2.4E-51 386.4 38.2 438 32-469 47-485 (966)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-39 2.6E-44 402.8 62.9 462 4-467 436-898 (899)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-38 3E-43 393.3 63.4 465 2-468 366-865 (899)
7 PRK11447 cellulose synthase su 100.0 1.7E-36 3.8E-41 373.7 62.9 467 2-468 31-699 (1157)
8 PRK11447 cellulose synthase su 100.0 1.5E-36 3.2E-41 374.3 61.6 466 3-468 116-739 (1157)
9 TIGR00990 3a0801s09 mitochondr 100.0 8.6E-35 1.9E-39 337.3 55.6 433 3-441 131-577 (615)
10 TIGR00990 3a0801s09 mitochondr 100.0 4.3E-34 9.3E-39 331.5 52.5 433 33-471 127-573 (615)
11 PRK09782 bacteriophage N4 rece 100.0 3.4E-32 7.4E-37 319.0 56.8 456 2-469 47-706 (987)
12 KOG2002 TPR-containing nuclear 100.0 1.1E-32 2.3E-37 299.6 46.3 468 2-469 167-709 (1018)
13 KOG2002 TPR-containing nuclear 100.0 4.2E-32 9E-37 295.0 47.7 463 14-477 251-799 (1018)
14 PRK10049 pgaA outer membrane p 100.0 5E-30 1.1E-34 302.4 50.0 422 19-443 2-464 (765)
15 PRK15174 Vi polysaccharide exp 100.0 1.4E-29 2.9E-34 292.1 48.0 361 67-440 42-408 (656)
16 PRK09782 bacteriophage N4 rece 100.0 4.1E-29 9E-34 293.1 52.2 457 2-469 81-740 (987)
17 PRK10049 pgaA outer membrane p 100.0 1.8E-29 3.8E-34 297.8 48.2 401 6-408 22-463 (765)
18 PRK15179 Vi polysaccharide bio 100.0 1.5E-29 3.2E-34 285.6 45.4 524 287-870 69-674 (694)
19 PRK15174 Vi polysaccharide exp 100.0 1.8E-29 4E-34 291.0 46.9 362 78-440 16-386 (656)
20 PLN03218 maturation of RBCL 1; 100.0 1.4E-27 3E-32 282.3 58.8 455 33-491 370-856 (1060)
21 PLN03081 pentatricopeptide (PP 100.0 1.6E-28 3.5E-33 289.3 50.1 455 3-468 91-556 (697)
22 PLN03077 Protein ECB2; Provisi 100.0 7.6E-29 1.6E-33 299.3 48.3 483 3-508 55-615 (857)
23 PLN03218 maturation of RBCL 1; 100.0 2.1E-26 4.5E-31 272.3 64.7 480 3-493 374-893 (1060)
24 KOG0547 Translocase of outer m 100.0 5.2E-28 1.1E-32 243.8 38.1 404 34-437 116-568 (606)
25 PLN03077 Protein ECB2; Provisi 100.0 2.8E-27 6E-32 285.8 50.8 452 3-468 226-719 (857)
26 PLN03081 pentatricopeptide (PP 100.0 5E-27 1.1E-31 276.7 51.0 470 3-483 127-611 (697)
27 KOG0547 Translocase of outer m 100.0 2.6E-27 5.6E-32 238.7 38.9 400 4-404 120-569 (606)
28 KOG0495 HAT repeat protein [RN 100.0 3E-25 6.4E-30 230.8 50.3 448 13-468 390-879 (913)
29 PRK14574 hmsH outer membrane p 100.0 1.3E-25 2.9E-30 258.4 53.1 439 3-442 38-520 (822)
30 PRK14574 hmsH outer membrane p 100.0 3.8E-25 8.2E-30 254.6 53.8 442 27-469 28-513 (822)
31 KOG2003 TPR repeat-containing 100.0 3.1E-26 6.7E-31 227.9 35.0 452 2-454 204-708 (840)
32 KOG1173 Anaphase-promoting com 100.0 3E-25 6.5E-30 228.6 43.2 438 5-444 22-527 (611)
33 KOG1155 Anaphase-promoting com 100.0 1.3E-24 2.7E-29 218.3 44.0 422 3-436 82-537 (559)
34 KOG2076 RNA polymerase III tra 100.0 7.8E-24 1.7E-28 229.8 47.8 296 2-297 142-510 (895)
35 KOG0548 Molecular co-chaperone 99.9 2.5E-24 5.3E-29 221.5 35.8 430 4-453 7-473 (539)
36 KOG1173 Anaphase-promoting com 99.9 8.8E-24 1.9E-28 217.9 38.7 412 3-415 53-532 (611)
37 KOG1155 Anaphase-promoting com 99.9 4.5E-23 9.8E-28 207.2 41.7 381 31-435 162-553 (559)
38 KOG1126 DNA-binding cell divis 99.9 4.4E-25 9.6E-30 232.7 26.5 305 137-441 319-626 (638)
39 KOG0495 HAT repeat protein [RN 99.9 6.3E-22 1.4E-26 206.3 48.5 440 3-447 410-892 (913)
40 PRK11788 tetratricopeptide rep 99.9 2.7E-23 5.8E-28 229.5 38.6 300 32-332 34-346 (389)
41 KOG1126 DNA-binding cell divis 99.9 1.6E-24 3.5E-29 228.5 26.9 305 35-339 319-626 (638)
42 KOG2003 TPR repeat-containing 99.9 9.8E-24 2.1E-28 210.2 30.1 461 9-470 159-690 (840)
43 PRK11788 tetratricopeptide rep 99.9 7.8E-23 1.7E-27 225.8 38.7 299 67-366 35-346 (389)
44 KOG2076 RNA polymerase III tra 99.9 3E-21 6.6E-26 209.9 47.6 436 33-468 139-694 (895)
45 KOG0624 dsRNA-activated protei 99.9 6E-22 1.3E-26 191.3 31.8 318 2-340 41-377 (504)
46 KOG1174 Anaphase-promoting com 99.9 4.9E-21 1.1E-25 189.5 38.6 438 4-446 48-511 (564)
47 KOG4162 Predicted calmodulin-b 99.9 9.7E-21 2.1E-25 202.5 39.4 434 8-441 293-789 (799)
48 KOG0624 dsRNA-activated protei 99.9 9.5E-21 2.1E-25 183.0 33.2 338 31-412 36-381 (504)
49 KOG0548 Molecular co-chaperone 99.9 4E-21 8.6E-26 198.0 31.6 412 36-468 5-454 (539)
50 KOG4162 Predicted calmodulin-b 99.9 2.3E-20 5.1E-25 199.6 36.0 403 4-406 328-788 (799)
51 KOG1915 Cell cycle control pro 99.9 7.7E-18 1.7E-22 169.8 51.7 445 3-451 77-551 (677)
52 KOG1156 N-terminal acetyltrans 99.9 6.2E-19 1.3E-23 185.1 44.6 466 2-473 10-515 (700)
53 KOG1174 Anaphase-promoting com 99.9 6.8E-19 1.5E-23 174.5 36.2 407 3-414 101-513 (564)
54 KOG1127 TPR repeat-containing 99.9 6.5E-19 1.4E-23 192.3 39.1 464 12-477 471-1004(1238)
55 PF13429 TPR_15: Tetratricopep 99.9 1.6E-21 3.5E-26 203.4 14.5 259 140-399 13-275 (280)
56 KOG1915 Cell cycle control pro 99.9 1E-16 2.2E-21 161.8 47.6 446 20-468 60-535 (677)
57 KOG1127 TPR repeat-containing 99.9 1.6E-18 3.4E-23 189.3 35.2 458 3-461 496-1028(1238)
58 KOG1129 TPR repeat-containing 99.8 9.7E-19 2.1E-23 168.2 28.0 269 178-446 188-469 (478)
59 PF13429 TPR_15: Tetratricopep 99.8 5E-21 1.1E-25 199.8 13.2 260 173-434 12-276 (280)
60 TIGR00540 hemY_coli hemY prote 99.8 5.1E-18 1.1E-22 186.2 37.5 300 105-435 88-399 (409)
61 TIGR00540 hemY_coli hemY prote 99.8 6.3E-18 1.4E-22 185.5 37.1 299 34-333 85-399 (409)
62 KOG1156 N-terminal acetyltrans 99.8 6.5E-17 1.4E-21 170.1 41.6 428 33-463 7-462 (700)
63 KOG2376 Signal recognition par 99.8 1.2E-16 2.5E-21 166.4 42.6 442 3-453 16-505 (652)
64 PRK12370 invasion protein regu 99.8 1.9E-18 4.1E-23 196.8 29.8 270 28-300 251-536 (553)
65 KOG1129 TPR repeat-containing 99.8 4.2E-19 9E-24 170.7 19.6 270 41-311 187-470 (478)
66 PRK10747 putative protoheme IX 99.8 3.3E-17 7.1E-22 178.7 37.2 298 34-334 85-391 (398)
67 PRK10747 putative protoheme IX 99.8 3.8E-17 8.3E-22 178.2 37.3 294 70-368 87-391 (398)
68 KOG3785 Uncharacterized conser 99.8 1.8E-16 3.9E-21 154.2 36.8 443 7-468 30-489 (557)
69 PRK12370 invasion protein regu 99.8 7.8E-18 1.7E-22 191.8 32.5 251 81-334 275-536 (553)
70 COG2956 Predicted N-acetylgluc 99.8 3.8E-16 8.3E-21 150.8 32.5 260 8-268 44-314 (389)
71 KOG1125 TPR repeat-containing 99.8 7.1E-18 1.5E-22 175.7 21.2 230 3-232 289-527 (579)
72 PRK15490 Vi polysaccharide bio 99.8 5.1E-17 1.1E-21 174.9 28.2 297 553-874 220-556 (578)
73 KOG3785 Uncharacterized conser 99.8 9.9E-16 2.1E-20 149.2 34.2 422 3-439 61-494 (557)
74 COG3063 PilF Tfp pilus assembl 99.8 5.4E-17 1.2E-21 150.1 24.2 205 33-237 35-241 (250)
75 PRK11189 lipoprotein NlpI; Pro 99.8 6.4E-17 1.4E-21 168.7 27.1 229 217-450 40-281 (296)
76 PRK11189 lipoprotein NlpI; Pro 99.8 1.3E-16 2.8E-21 166.4 28.8 231 47-282 40-283 (296)
77 COG3063 PilF Tfp pilus assembl 99.8 1.3E-16 2.7E-21 147.7 25.0 207 236-442 35-243 (250)
78 COG2956 Predicted N-acetylgluc 99.8 2.4E-15 5.3E-20 145.4 33.2 264 176-441 42-317 (389)
79 KOG0550 Molecular chaperone (D 99.8 1E-16 2.3E-21 159.7 24.2 279 5-302 55-353 (486)
80 TIGR02521 type_IV_pilW type IV 99.8 2.4E-16 5.2E-21 160.6 26.9 201 236-436 31-233 (234)
81 TIGR02521 type_IV_pilW type IV 99.8 2.7E-16 5.8E-21 160.2 26.9 203 32-234 30-234 (234)
82 KOG1125 TPR repeat-containing 99.8 5.9E-17 1.3E-21 168.9 21.8 263 139-427 289-563 (579)
83 KOG1840 Kinesin light chain [C 99.7 4.3E-15 9.3E-20 160.2 31.6 234 200-433 196-477 (508)
84 KOG0550 Molecular chaperone (D 99.7 1.6E-16 3.4E-21 158.4 18.8 293 105-438 53-353 (486)
85 KOG1840 Kinesin light chain [C 99.7 6.6E-15 1.4E-19 158.8 32.7 237 165-401 195-479 (508)
86 PLN02789 farnesyltranstransfer 99.7 2.1E-15 4.6E-20 156.2 26.4 203 12-214 50-266 (320)
87 KOG2376 Signal recognition par 99.7 1.6E-13 3.5E-18 143.4 39.7 427 34-469 13-487 (652)
88 PLN02789 farnesyltranstransfer 99.7 4.8E-15 1E-19 153.6 27.6 208 41-248 45-267 (320)
89 KOG2047 mRNA splicing factor [ 99.7 1.5E-11 3.3E-16 129.6 48.4 449 2-455 105-709 (835)
90 cd05804 StaR_like StaR_like; a 99.7 1.2E-13 2.5E-18 150.5 34.7 205 29-234 2-217 (355)
91 PRK15427 colanic acid biosynth 99.7 2.3E-15 4.9E-20 165.0 20.3 156 712-876 221-388 (406)
92 cd05804 StaR_like StaR_like; a 99.7 2.4E-13 5.3E-18 148.0 34.9 204 63-267 2-217 (355)
93 cd03812 GT1_CapH_like This fam 99.7 8E-15 1.7E-19 160.2 22.0 319 538-874 1-346 (358)
94 KOG2047 mRNA splicing factor [ 99.7 3E-11 6.4E-16 127.4 46.8 414 19-437 46-581 (835)
95 PF12569 NARP1: NMDA receptor- 99.6 3.6E-12 7.8E-17 139.8 40.4 296 2-300 7-335 (517)
96 KOG4340 Uncharacterized conser 99.6 3.8E-13 8.2E-18 128.5 28.2 284 7-293 18-333 (459)
97 cd03792 GT1_Trehalose_phosphor 99.6 2.7E-14 5.8E-19 156.3 22.3 319 538-874 1-352 (372)
98 cd03805 GT1_ALG2_like This fam 99.6 1.2E-14 2.7E-19 160.7 19.3 164 704-874 202-379 (392)
99 cd03796 GT1_PIG-A_like This fa 99.6 1.1E-14 2.3E-19 160.7 18.4 311 538-872 1-346 (398)
100 cd03822 GT1_ecORF704_like This 99.6 4.4E-14 9.4E-19 154.9 22.8 318 538-874 1-349 (366)
101 cd03818 GT1_ExpC_like This fam 99.6 6.1E-14 1.3E-18 154.7 23.3 206 659-876 157-383 (396)
102 KOG4340 Uncharacterized conser 99.6 1E-12 2.2E-17 125.6 27.5 385 43-440 20-448 (459)
103 PF12569 NARP1: NMDA receptor- 99.6 5.3E-12 1.2E-16 138.5 35.9 299 33-367 4-334 (517)
104 COG3071 HemY Uncharacterized e 99.6 1.5E-11 3.2E-16 123.5 34.9 292 39-333 90-390 (400)
105 cd03821 GT1_Bme6_like This fam 99.6 1E-13 2.3E-18 152.3 22.0 322 538-874 1-360 (375)
106 COG3071 HemY Uncharacterized e 99.6 2.3E-11 5E-16 122.2 35.9 294 70-367 87-390 (400)
107 cd03801 GT1_YqgM_like This fam 99.6 3.8E-14 8.3E-19 155.3 18.2 320 538-874 1-356 (374)
108 cd03820 GT1_amsD_like This fam 99.6 1.3E-13 2.8E-18 149.7 22.0 305 538-873 1-333 (348)
109 cd03817 GT1_UGDG_like This fam 99.6 3.8E-14 8.3E-19 155.7 17.9 322 538-875 1-359 (374)
110 TIGR03088 stp2 sugar transfera 99.6 1.1E-13 2.4E-18 151.9 21.4 310 537-874 2-353 (374)
111 PLN02949 transferase, transfer 99.6 3.4E-14 7.4E-19 156.3 17.2 165 714-886 269-447 (463)
112 PLN02846 digalactosyldiacylgly 99.6 3.1E-14 6.7E-19 153.6 15.8 302 535-859 3-363 (462)
113 cd03811 GT1_WabH_like This fam 99.6 1.2E-13 2.6E-18 150.3 19.4 315 538-873 1-346 (353)
114 cd05844 GT1_like_7 Glycosyltra 99.6 1.3E-13 2.9E-18 151.1 19.1 251 601-874 71-351 (367)
115 cd04962 GT1_like_5 This family 99.6 2E-13 4.4E-18 149.9 20.5 308 537-873 1-350 (371)
116 PLN02871 UDP-sulfoquinovose:DA 99.5 1.8E-13 3.8E-18 153.8 19.9 320 533-874 55-415 (465)
117 cd03799 GT1_amsK_like This is 99.5 7.2E-14 1.6E-18 152.5 15.7 313 538-875 1-343 (355)
118 TIGR03302 OM_YfiO outer membra 99.5 7.4E-13 1.6E-17 134.5 21.8 185 236-437 33-234 (235)
119 cd03807 GT1_WbnK_like This fam 99.5 6.7E-13 1.4E-17 145.2 23.1 312 538-874 1-347 (365)
120 TIGR03302 OM_YfiO outer membra 99.5 1.3E-12 2.7E-17 132.9 22.9 188 30-234 30-234 (235)
121 PRK09922 UDP-D-galactose:(gluc 99.5 1.7E-13 3.7E-18 148.8 16.8 306 537-871 1-338 (359)
122 KOG3060 Uncharacterized conser 99.5 4.3E-12 9.3E-17 119.3 23.1 188 265-452 47-237 (289)
123 cd03800 GT1_Sucrose_synthase T 99.5 7.2E-13 1.6E-17 147.1 20.6 163 704-874 211-383 (398)
124 cd03819 GT1_WavL_like This fam 99.5 3.1E-13 6.6E-18 147.5 17.2 305 553-875 14-347 (355)
125 PRK15359 type III secretion sy 99.5 4.7E-13 1E-17 122.8 15.3 124 324-450 13-136 (144)
126 PRK14720 transcript cleavage f 99.5 6.4E-12 1.4E-16 143.5 27.5 243 164-451 26-268 (906)
127 cd03816 GT1_ALG1_like This fam 99.5 4.6E-13 9.9E-18 147.8 17.4 155 711-874 230-399 (415)
128 PLN02501 digalactosyldiacylgly 99.5 3.7E-13 8.1E-18 146.7 15.7 243 600-864 422-686 (794)
129 PRK14720 transcript cleavage f 99.5 4.4E-12 9.5E-17 144.8 25.0 267 28-338 26-311 (906)
130 PRK04841 transcriptional regul 99.5 2.4E-10 5.2E-15 140.8 42.0 371 69-440 343-765 (903)
131 PRK15359 type III secretion sy 99.5 1.3E-12 2.8E-17 120.0 15.6 124 20-146 14-137 (144)
132 PRK10307 putative glycosyl tra 99.5 9.2E-13 2E-17 146.3 17.6 185 673-874 193-388 (412)
133 PRK15484 lipopolysaccharide 1, 99.5 3.1E-12 6.7E-17 139.5 21.0 161 703-874 183-358 (380)
134 PRK10370 formate-dependent nit 99.5 3.3E-12 7.2E-17 123.8 18.4 125 317-441 52-179 (198)
135 cd04951 GT1_WbdM_like This fam 99.5 1.5E-12 3.2E-17 142.4 17.9 312 539-869 2-337 (360)
136 cd03814 GT1_like_2 This family 99.5 1.7E-12 3.7E-17 142.1 18.2 314 538-874 1-347 (364)
137 PRK04841 transcriptional regul 99.5 3.5E-10 7.6E-15 139.4 40.5 370 34-404 342-763 (903)
138 cd03809 GT1_mtfB_like This fam 99.5 5.9E-13 1.3E-17 145.8 14.1 309 538-873 1-350 (365)
139 cd03806 GT1_ALG11_like This fa 99.4 1.4E-12 3.1E-17 143.6 16.5 167 712-886 236-417 (419)
140 COG5010 TadD Flp pilus assembl 99.4 1.4E-11 3.1E-16 117.4 20.5 176 255-431 52-227 (257)
141 TIGR02472 sucr_P_syn_N sucrose 99.4 1.6E-12 3.4E-17 144.8 16.3 160 706-874 241-421 (439)
142 cd03795 GT1_like_4 This family 99.4 5.8E-12 1.3E-16 137.5 20.4 297 553-875 18-348 (357)
143 KOG3060 Uncharacterized conser 99.4 5.5E-11 1.2E-15 111.9 22.9 183 236-418 52-237 (289)
144 COG5010 TadD Flp pilus assembl 99.4 2.9E-11 6.2E-16 115.4 21.3 176 52-228 52-227 (257)
145 TIGR03449 mycothiol_MshA UDP-N 99.4 2.5E-12 5.4E-17 142.7 16.7 186 673-873 186-382 (405)
146 KOG1130 Predicted G-alpha GTPa 99.4 3.8E-12 8.3E-17 126.9 15.9 113 38-150 22-150 (639)
147 PRK10370 formate-dependent nit 99.4 2.2E-11 4.7E-16 118.1 20.3 123 80-202 52-177 (198)
148 KOG1128 Uncharacterized conser 99.4 7.1E-12 1.5E-16 134.6 18.1 221 236-471 398-618 (777)
149 cd03798 GT1_wlbH_like This fam 99.4 8.4E-12 1.8E-16 137.0 19.6 305 541-862 3-347 (377)
150 cd03825 GT1_wcfI_like This fam 99.4 5.2E-12 1.1E-16 138.4 17.7 156 703-874 181-345 (365)
151 cd03808 GT1_cap1E_like This fa 99.4 2.9E-11 6.4E-16 131.8 23.0 153 711-874 186-344 (359)
152 PF00534 Glycos_transf_1: Glyc 99.4 1.6E-12 3.4E-17 125.2 11.3 160 705-873 7-172 (172)
153 cd03823 GT1_ExpE7_like This fa 99.4 5.3E-12 1.1E-16 137.9 16.8 309 538-874 1-344 (359)
154 PF04733 Coatomer_E: Coatomer 99.4 7.8E-12 1.7E-16 128.2 16.7 256 179-442 11-272 (290)
155 cd03802 GT1_AviGT4_like This f 99.4 3E-11 6.5E-16 130.6 22.3 283 537-860 1-309 (335)
156 PLN02939 transferase, transfer 99.4 7.4E-12 1.6E-16 142.7 17.9 164 703-870 766-946 (977)
157 KOG1130 Predicted G-alpha GTPa 99.4 4.2E-12 9.2E-17 126.6 13.7 307 73-423 23-372 (639)
158 KOG1128 Uncharacterized conser 99.4 1.6E-11 3.5E-16 131.9 18.4 219 169-401 398-616 (777)
159 TIGR02149 glgA_Coryne glycogen 99.4 3.3E-12 7.1E-17 141.1 13.9 162 703-874 191-367 (388)
160 PRK15179 Vi polysaccharide bio 99.4 1.2E-10 2.6E-15 132.9 24.9 151 259-409 75-225 (694)
161 cd04949 GT1_gtfA_like This fam 99.4 2.5E-11 5.4E-16 133.2 18.9 149 714-873 207-359 (372)
162 KOG2053 Mitochondrial inherita 99.3 3E-07 6.4E-12 102.0 49.0 449 7-456 17-557 (932)
163 cd04955 GT1_like_6 This family 99.3 1E-11 2.2E-16 136.0 15.2 309 538-874 1-345 (363)
164 PRK05749 3-deoxy-D-manno-octul 99.3 1.1E-11 2.5E-16 137.9 15.4 258 600-875 112-404 (425)
165 cd03794 GT1_wbuB_like This fam 99.3 3.7E-11 8.1E-16 132.8 18.0 161 705-875 212-381 (394)
166 PF04733 Coatomer_E: Coatomer 99.3 5.1E-11 1.1E-15 122.3 17.3 254 6-268 8-268 (290)
167 TIGR02552 LcrH_SycD type III s 99.3 4.9E-11 1.1E-15 109.4 15.2 118 325-442 4-121 (135)
168 KOG0553 TPR repeat-containing 99.3 2.3E-11 5.1E-16 118.1 13.3 109 341-449 84-192 (304)
169 PLN02316 synthase/transferase 99.3 2.3E-11 4.9E-16 141.6 14.9 169 703-874 829-1014(1036)
170 cd03804 GT1_wbaZ_like This fam 99.3 9.8E-11 2.1E-15 127.3 18.3 142 712-871 196-339 (351)
171 TIGR02552 LcrH_SycD type III s 99.3 1.1E-10 2.5E-15 106.9 15.6 116 21-136 5-120 (135)
172 cd03813 GT1_like_3 This family 99.3 3.8E-11 8.2E-16 135.0 15.0 161 710-875 290-458 (475)
173 PRK13609 diacylglycerol glucos 99.3 1E-10 2.2E-15 128.3 17.2 248 602-873 94-352 (380)
174 cd04946 GT1_AmsK_like This fam 99.3 8.6E-11 1.9E-15 129.4 16.1 157 711-875 228-393 (407)
175 TIGR02470 sucr_synth sucrose s 99.3 8.3E-11 1.8E-15 133.8 16.2 162 705-874 540-728 (784)
176 TIGR03087 stp1 sugar transfera 99.2 7.1E-11 1.5E-15 130.3 15.0 148 711-874 222-377 (397)
177 TIGR02468 sucrsPsyn_pln sucros 99.2 8.8E-11 1.9E-15 136.3 16.1 159 707-874 473-652 (1050)
178 TIGR02918 accessory Sec system 99.2 9.7E-11 2.1E-15 130.5 15.6 147 714-873 320-480 (500)
179 KOG0553 TPR repeat-containing 99.2 9.3E-11 2E-15 114.0 13.2 120 33-152 81-200 (304)
180 PLN02605 monogalactosyldiacylg 99.2 2.5E-10 5.4E-15 124.8 18.4 253 602-874 90-363 (382)
181 PRK15363 pathogenicity island 99.2 1.6E-10 3.4E-15 103.2 13.1 105 332-436 28-133 (157)
182 KOG1914 mRNA cleavage and poly 99.2 1.8E-06 3.9E-11 90.5 43.9 413 23-437 10-503 (656)
183 KOG1914 mRNA cleavage and poly 99.2 1.3E-06 2.8E-11 91.5 42.0 413 57-471 10-503 (656)
184 COG4783 Putative Zn-dependent 99.2 4.4E-09 9.6E-14 109.1 24.1 153 64-233 303-455 (484)
185 PRK00654 glgA glycogen synthas 99.2 1.7E-10 3.6E-15 129.4 15.0 162 703-871 271-443 (466)
186 KOG2053 Mitochondrial inherita 99.2 1.8E-06 3.8E-11 96.0 45.1 431 43-474 19-541 (932)
187 COG4783 Putative Zn-dependent 99.2 5.9E-09 1.3E-13 108.2 24.5 125 267-391 303-427 (484)
188 TIGR00236 wecB UDP-N-acetylglu 99.2 6.3E-10 1.4E-14 121.2 18.2 301 538-870 2-345 (365)
189 PLN00142 sucrose synthase 99.2 3.3E-10 7.2E-15 128.9 16.2 162 705-874 563-751 (815)
190 cd03785 GT1_MurG MurG is an N- 99.2 4.9E-10 1.1E-14 121.7 16.5 245 603-874 80-339 (350)
191 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 7.3E-10 1.6E-14 121.1 17.8 303 538-867 1-345 (363)
192 TIGR02095 glgA glycogen/starch 99.2 8.4E-10 1.8E-14 124.5 18.2 163 703-871 279-453 (473)
193 PRK15363 pathogenicity island 99.1 1E-09 2.2E-14 98.1 14.2 102 301-402 32-133 (157)
194 PRK14099 glycogen synthase; Pr 99.1 5.7E-10 1.2E-14 124.5 15.5 160 703-871 283-459 (485)
195 KOG3617 WD40 and TPR repeat-co 99.1 5.1E-07 1.1E-11 98.3 36.7 270 38-330 805-1171(1416)
196 KOG1111 N-acetylglucosaminyltr 99.1 3E-10 6.4E-15 112.3 11.1 160 651-839 143-308 (426)
197 PHA01633 putative glycosyl tra 99.1 7.5E-10 1.6E-14 115.2 14.1 107 712-828 147-263 (335)
198 PLN02275 transferase, transfer 99.1 7.3E-10 1.6E-14 120.6 14.6 133 714-856 214-370 (371)
199 PRK00726 murG undecaprenyldiph 99.1 2.5E-09 5.4E-14 116.4 18.4 304 537-873 2-338 (357)
200 PRK13608 diacylglycerol glucos 99.1 1E-09 2.2E-14 120.0 14.5 157 703-873 192-352 (391)
201 KOG1070 rRNA processing protei 99.1 4.3E-08 9.4E-13 112.6 26.9 218 151-368 1440-1664(1710)
202 KOG3617 WD40 and TPR repeat-co 99.1 1.1E-06 2.4E-11 95.8 35.3 269 5-296 806-1171(1416)
203 PLN03088 SGT1, suppressor of 99.1 2.6E-09 5.6E-14 114.2 15.8 107 4-110 7-113 (356)
204 TIGR01133 murG undecaprenyldip 99.1 3.7E-09 8.1E-14 114.7 17.4 158 704-874 170-336 (348)
205 KOG1941 Acetylcholine receptor 99.1 4.5E-08 9.7E-13 96.9 22.2 300 175-474 12-365 (518)
206 PRK10866 outer membrane biogen 99.0 4.2E-08 9.2E-13 98.3 22.3 182 31-229 30-238 (243)
207 KOG2300 Uncharacterized conser 99.0 3E-05 6.6E-10 80.3 42.5 403 35-440 9-519 (629)
208 PF13692 Glyco_trans_1_4: Glyc 99.0 3.3E-10 7.2E-15 103.9 6.2 129 713-859 2-135 (135)
209 PLN03088 SGT1, suppressor of 99.0 4.7E-09 1E-13 112.1 15.7 109 341-449 5-113 (356)
210 PF13525 YfiO: Outer membrane 99.0 3.4E-08 7.4E-13 96.8 19.9 171 2-189 8-198 (203)
211 cd03791 GT1_Glycogen_synthase_ 99.0 3.2E-09 6.8E-14 120.5 14.3 158 703-872 284-458 (476)
212 PRK14098 glycogen synthase; Pr 99.0 3.8E-09 8.3E-14 118.1 14.2 159 703-869 295-464 (489)
213 PRK10866 outer membrane biogen 99.0 1.6E-07 3.5E-12 94.2 23.4 181 65-262 30-238 (243)
214 KOG1070 rRNA processing protei 99.0 2.8E-07 6E-12 106.2 27.5 215 18-233 1443-1664(1710)
215 KOG3081 Vesicle coat complex C 98.9 9.8E-07 2.1E-11 84.5 25.9 253 179-441 18-277 (299)
216 PRK10125 putative glycosyl tra 98.9 6.4E-08 1.4E-12 105.9 20.2 265 537-827 1-345 (405)
217 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.4E-08 5.3E-13 89.1 14.1 105 339-443 3-113 (119)
218 PF13525 YfiO: Outer membrane 98.9 1.3E-07 2.9E-12 92.6 20.2 83 32-114 4-92 (203)
219 COG4235 Cytochrome c biogenesi 98.9 3.5E-08 7.6E-13 97.3 15.4 122 320-441 138-262 (287)
220 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.9E-08 6.2E-13 88.7 13.9 99 3-101 6-110 (119)
221 KOG1941 Acetylcholine receptor 98.9 2.7E-07 5.9E-12 91.5 21.4 229 3-231 10-274 (518)
222 KOG3616 Selective LIM binding 98.9 1.6E-05 3.5E-10 85.8 36.0 409 9-463 454-931 (1636)
223 COG3898 Uncharacterized membra 98.9 1.9E-06 4.1E-11 86.6 27.1 288 5-299 90-392 (531)
224 PF09976 TPR_21: Tetratricopep 98.9 7.8E-08 1.7E-12 88.8 16.1 116 45-161 23-144 (145)
225 cd03788 GT1_TPS Trehalose-6-Ph 98.9 8E-09 1.7E-13 114.9 11.0 167 707-886 258-452 (460)
226 COG4235 Cytochrome c biogenesi 98.9 6.2E-08 1.3E-12 95.6 15.8 121 83-203 138-261 (287)
227 PRK00025 lpxB lipid-A-disaccha 98.9 1.3E-08 2.9E-13 111.7 11.9 158 703-872 176-354 (380)
228 PF13414 TPR_11: TPR repeat; P 98.8 1.4E-08 3E-13 80.2 8.5 67 371-437 2-69 (69)
229 COG3898 Uncharacterized membra 98.8 1.8E-05 3.9E-10 79.7 32.0 290 38-334 89-393 (531)
230 KOG3081 Vesicle coat complex C 98.8 3.2E-06 6.9E-11 81.1 25.4 235 40-285 15-256 (299)
231 KOG2471 TPR repeat-containing 98.8 5E-06 1.1E-10 85.9 28.6 459 4-464 22-679 (696)
232 cd00189 TPR Tetratricopeptide 98.8 3.5E-08 7.6E-13 83.9 11.5 99 340-438 2-100 (100)
233 PHA01630 putative group 1 glyc 98.8 2.9E-08 6.3E-13 104.9 13.2 141 714-871 143-309 (331)
234 cd01635 Glycosyltransferase_GT 98.8 1.2E-07 2.7E-12 95.8 17.2 108 715-825 109-218 (229)
235 KOG2300 Uncharacterized conser 98.8 0.00029 6.3E-09 73.3 41.5 426 2-430 10-551 (629)
236 COG0457 NrfG FOG: TPR repeat [ 98.8 6.5E-06 1.4E-10 83.8 30.2 222 217-438 37-268 (291)
237 PRK02603 photosystem I assembl 98.8 1.2E-07 2.7E-12 90.5 15.9 94 32-125 34-130 (172)
238 PF12895 Apc3: Anaphase-promot 98.8 1.1E-08 2.4E-13 84.3 7.4 82 11-93 1-84 (84)
239 COG0457 NrfG FOG: TPR repeat [ 98.8 1.9E-05 4.1E-10 80.3 33.5 223 46-268 36-268 (291)
240 CHL00033 ycf3 photosystem I as 98.8 1.2E-07 2.6E-12 90.3 15.3 108 8-115 8-120 (168)
241 PF14938 SNAP: Soluble NSF att 98.8 1.1E-06 2.4E-11 91.3 23.5 178 48-268 30-228 (282)
242 cd00189 TPR Tetratricopeptide 98.8 5.2E-08 1.1E-12 82.8 11.5 95 3-97 4-98 (100)
243 KOG0543 FKBP-type peptidyl-pro 98.8 6.1E-08 1.3E-12 98.9 13.5 95 341-435 260-355 (397)
244 COG4785 NlpI Lipoprotein NlpI, 98.8 4.3E-07 9.3E-12 83.7 17.5 102 68-169 66-167 (297)
245 CHL00033 ycf3 photosystem I as 98.8 1.3E-07 2.7E-12 90.1 14.9 102 339-440 36-154 (168)
246 TIGR00215 lpxB lipid-A-disacch 98.8 3.7E-08 7.9E-13 107.1 12.5 163 703-875 181-367 (385)
247 COG4785 NlpI Lipoprotein NlpI, 98.8 2.3E-07 5.1E-12 85.4 15.5 195 101-300 65-267 (297)
248 KOG0543 FKBP-type peptidyl-pro 98.8 9.8E-08 2.1E-12 97.4 14.4 109 5-113 214-337 (397)
249 PRK02603 photosystem I assembl 98.8 2.1E-07 4.5E-12 88.9 16.1 118 65-202 33-153 (172)
250 TIGR02400 trehalose_OtsA alpha 98.8 4.7E-08 1E-12 107.7 13.1 162 712-886 258-447 (456)
251 PF13414 TPR_11: TPR repeat; P 98.8 3E-08 6.6E-13 78.3 8.1 67 32-98 2-69 (69)
252 PF13432 TPR_16: Tetratricopep 98.8 2.6E-08 5.7E-13 77.5 7.6 63 4-66 2-64 (65)
253 PF09976 TPR_21: Tetratricopep 98.8 3.8E-07 8.3E-12 84.2 16.6 123 4-127 16-144 (145)
254 PF14938 SNAP: Soluble NSF att 98.8 4.9E-07 1.1E-11 93.8 19.2 126 310-435 120-266 (282)
255 PF13432 TPR_16: Tetratricopep 98.8 4.2E-08 9.1E-13 76.3 8.2 64 377-440 2-65 (65)
256 PRK11906 transcriptional regul 98.7 9.3E-07 2E-11 92.8 20.4 132 37-168 259-405 (458)
257 PF12895 Apc3: Anaphase-promot 98.7 3.1E-08 6.8E-13 81.6 7.5 81 351-432 2-84 (84)
258 PRK10803 tol-pal system protei 98.7 2.7E-07 5.8E-12 93.1 15.3 106 32-137 141-253 (263)
259 PRK10153 DNA-binding transcrip 98.7 4.4E-07 9.6E-12 101.0 18.1 121 320-441 358-488 (517)
260 PRK10153 DNA-binding transcrip 98.7 7.3E-07 1.6E-11 99.3 19.7 121 83-204 358-488 (517)
261 PRK11906 transcriptional regul 98.7 7.4E-07 1.6E-11 93.6 18.4 149 14-162 273-434 (458)
262 KOG4648 Uncharacterized conser 98.7 1.5E-08 3.3E-13 99.3 5.1 226 36-270 100-335 (536)
263 KOG1258 mRNA processing protei 98.7 0.001 2.2E-08 72.0 44.8 398 49-455 61-490 (577)
264 COG1729 Uncharacterized protei 98.7 3.9E-07 8.4E-12 88.9 14.4 101 3-103 145-251 (262)
265 PRK15331 chaperone protein Sic 98.7 2.7E-07 5.8E-12 83.0 11.9 104 335-439 34-137 (165)
266 PRK10803 tol-pal system protei 98.7 4.8E-07 1E-11 91.3 14.7 104 339-442 143-253 (263)
267 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6E-07 1.3E-11 95.2 16.0 117 42-161 178-294 (395)
268 COG5107 RNA14 Pre-mRNA 3'-end 98.6 0.0006 1.3E-08 70.3 35.9 389 21-435 30-495 (660)
269 PRK15331 chaperone protein Sic 98.6 6.8E-07 1.5E-11 80.5 12.7 99 31-129 35-133 (165)
270 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.5E-07 2.1E-11 93.7 15.7 120 310-432 175-294 (395)
271 KOG4648 Uncharacterized conser 98.6 4.6E-08 9.9E-13 96.0 4.8 226 208-442 102-337 (536)
272 cd04950 GT1_like_1 Glycosyltra 98.6 2.6E-07 5.6E-12 100.8 11.3 131 711-859 203-341 (373)
273 KOG0985 Vesicle coat protein c 98.6 0.00084 1.8E-08 75.8 37.3 330 20-384 968-1325(1666)
274 COG4105 ComL DNA uptake lipopr 98.6 1.9E-05 4.2E-10 76.5 21.8 170 33-202 34-237 (254)
275 KOG2471 TPR repeat-containing 98.6 7.6E-05 1.7E-09 77.5 27.0 427 2-434 103-683 (696)
276 KOG4234 TPR repeat-containing 98.5 9.1E-07 2E-11 80.5 11.5 107 343-449 100-211 (271)
277 KOG0985 Vesicle coat protein c 98.5 0.0011 2.3E-08 75.1 37.3 285 5-324 1054-1374(1666)
278 PF14559 TPR_19: Tetratricopep 98.5 3.1E-07 6.8E-12 72.2 7.2 66 10-75 2-67 (68)
279 PF13512 TPR_18: Tetratricopep 98.5 2.4E-06 5.1E-11 75.3 12.9 81 2-82 13-99 (142)
280 COG1729 Uncharacterized protei 98.5 1.9E-06 4.2E-11 84.2 13.4 104 341-444 144-253 (262)
281 KOG3616 Selective LIM binding 98.5 0.00031 6.7E-09 76.3 30.7 31 406-436 995-1025(1636)
282 KOG0853 Glycosyltransferase [C 98.5 1.3E-06 2.9E-11 93.3 13.1 169 701-876 261-450 (495)
283 KOG2796 Uncharacterized conser 98.5 0.00011 2.3E-09 70.3 23.9 185 208-404 127-318 (366)
284 PF10345 Cohesin_load: Cohesin 98.5 0.0061 1.3E-07 70.9 44.0 179 16-195 38-251 (608)
285 PF07079 DUF1347: Protein of u 98.5 0.0031 6.6E-08 65.6 43.2 431 3-443 10-528 (549)
286 COG4105 ComL DNA uptake lipopr 98.4 5.8E-05 1.3E-09 73.2 21.7 176 66-258 33-226 (254)
287 KOG4234 TPR repeat-containing 98.4 3.1E-06 6.7E-11 77.2 12.1 113 33-145 95-212 (271)
288 PF14559 TPR_19: Tetratricopep 98.4 8.3E-07 1.8E-11 69.8 7.4 63 350-412 3-65 (68)
289 PF12688 TPR_5: Tetratrico pep 98.4 6.9E-06 1.5E-10 71.5 13.4 95 340-434 3-103 (120)
290 COG4700 Uncharacterized protei 98.4 4.1E-05 8.9E-10 69.2 18.3 124 307-431 92-218 (251)
291 PF12688 TPR_5: Tetratrico pep 98.4 8.8E-06 1.9E-10 70.8 13.8 91 36-126 4-100 (120)
292 COG4700 Uncharacterized protei 98.4 4.5E-05 9.8E-10 69.0 18.3 147 219-398 72-219 (251)
293 KOG4555 TPR repeat-containing 98.4 4.1E-06 9E-11 70.6 11.0 109 344-452 49-161 (175)
294 KOG2396 HAT (Half-A-TPR) repea 98.4 0.0056 1.2E-07 64.6 40.8 426 18-471 90-561 (568)
295 PLN03063 alpha,alpha-trehalose 98.4 1.7E-06 3.8E-11 101.7 11.1 154 712-874 278-459 (797)
296 PF13371 TPR_9: Tetratricopept 98.4 2.3E-06 5.1E-11 68.3 8.5 62 347-408 4-65 (73)
297 PF13512 TPR_18: Tetratricopep 98.3 1.3E-05 2.8E-10 70.7 13.2 85 32-116 9-99 (142)
298 PF13371 TPR_9: Tetratricopept 98.3 3.1E-06 6.6E-11 67.6 8.6 67 6-72 2-68 (73)
299 KOG4507 Uncharacterized conser 98.3 0.00013 2.8E-09 77.4 22.2 108 343-450 612-720 (886)
300 TIGR03713 acc_sec_asp1 accesso 98.3 7.9E-06 1.7E-10 91.3 14.1 150 713-872 321-501 (519)
301 PRK14501 putative bifunctional 98.3 2.6E-06 5.5E-11 100.7 10.6 154 711-874 263-444 (726)
302 KOG1258 mRNA processing protei 98.3 0.011 2.4E-07 64.3 43.1 394 16-420 62-489 (577)
303 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.0084 1.8E-07 62.2 39.3 428 2-439 45-535 (660)
304 COG0438 RfaG Glycosyltransfera 98.2 2.2E-05 4.9E-10 85.2 14.7 149 714-870 200-353 (381)
305 KOG4555 TPR repeat-containing 98.2 7.6E-05 1.6E-09 63.2 13.7 97 308-404 47-147 (175)
306 KOG2796 Uncharacterized conser 98.2 0.0021 4.6E-08 61.8 25.0 223 67-302 69-318 (366)
307 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 9.1E-06 2E-10 85.5 9.9 68 368-435 71-141 (453)
308 cd03793 GT1_Glycogen_synthase_ 98.1 8.1E-06 1.8E-10 89.4 9.8 98 772-871 450-563 (590)
309 KOG1585 Protein required for f 98.1 0.00069 1.5E-08 64.4 20.4 193 236-458 31-245 (308)
310 KOG1387 Glycosyltransferase [C 98.1 2.9E-05 6.3E-10 77.1 11.9 153 716-874 274-440 (465)
311 TIGR02919 accessory Sec system 98.1 4.4E-05 9.6E-10 83.2 14.0 130 727-870 291-422 (438)
312 TIGR02398 gluc_glyc_Psyn gluco 98.1 6E-05 1.3E-09 82.7 14.3 158 703-874 278-464 (487)
313 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 6.9E-05 1.5E-09 79.0 13.7 68 29-96 71-141 (453)
314 cd03784 GT1_Gtf_like This fami 98.0 0.00085 1.8E-08 74.3 23.5 141 712-871 239-383 (401)
315 PF04184 ST7: ST7 protein; In 98.0 0.00077 1.7E-08 71.2 21.0 213 5-231 174-413 (539)
316 PF06552 TOM20_plant: Plant sp 98.0 3.4E-05 7.4E-10 70.2 9.8 91 355-445 8-119 (186)
317 PF13424 TPR_12: Tetratricopep 98.0 8.7E-06 1.9E-10 65.9 4.9 64 372-435 5-75 (78)
318 KOG4507 Uncharacterized conser 98.0 0.0011 2.3E-08 70.7 21.1 107 311-417 614-721 (886)
319 PF05843 Suf: Suppressor of fo 98.0 0.00018 4E-09 74.3 15.5 136 306-441 3-142 (280)
320 KOG1586 Protein required for f 98.0 0.0042 9.1E-08 58.9 22.0 120 184-303 88-228 (288)
321 COG1819 Glycosyl transferases, 97.9 0.0027 5.9E-08 69.3 24.5 141 712-871 237-380 (406)
322 KOG1586 Protein required for f 97.9 0.0047 1E-07 58.5 22.2 85 113-197 85-182 (288)
323 PF06552 TOM20_plant: Plant sp 97.9 9.4E-05 2E-09 67.4 10.5 67 15-81 7-83 (186)
324 PF05843 Suf: Suppressor of fo 97.9 0.0004 8.6E-09 71.8 16.6 132 70-201 4-139 (280)
325 KOG0890 Protein kinase of the 97.9 0.043 9.4E-07 68.9 35.8 149 4-157 1388-1540(2382)
326 PLN03004 UDP-glycosyltransfera 97.9 0.00027 5.7E-09 77.6 16.0 145 712-865 270-430 (451)
327 TIGR03568 NeuC_NnaA UDP-N-acet 97.9 0.00032 7E-09 75.6 16.3 315 538-882 2-355 (365)
328 KOG2610 Uncharacterized conser 97.9 0.0012 2.5E-08 65.7 18.3 157 277-433 110-274 (491)
329 TIGR01426 MGT glycosyltransfer 97.9 0.00029 6.3E-09 77.6 16.2 139 712-866 225-366 (392)
330 PF13424 TPR_12: Tetratricopep 97.9 1.3E-05 2.8E-10 64.9 3.8 64 338-401 5-75 (78)
331 KOG2610 Uncharacterized conser 97.9 0.0013 2.9E-08 65.3 17.8 156 108-263 110-274 (491)
332 PRK09814 beta-1,6-galactofuran 97.8 0.00012 2.6E-09 78.3 11.9 131 714-873 170-312 (333)
333 KOG1585 Protein required for f 97.8 0.0043 9.3E-08 59.2 20.2 198 33-260 31-251 (308)
334 TIGR03492 conserved hypothetic 97.8 0.0003 6.4E-09 76.7 14.9 141 724-873 221-378 (396)
335 KOG4642 Chaperone-dependent E3 97.8 0.0002 4.2E-09 67.8 10.4 91 345-435 17-107 (284)
336 TIGR03590 PseG pseudaminic aci 97.8 0.00072 1.6E-08 70.0 15.6 232 560-820 25-268 (279)
337 COG0707 MurG UDP-N-acetylgluco 97.7 0.0016 3.4E-08 69.2 18.0 246 601-873 80-338 (357)
338 PF10345 Cohesin_load: Cohesin 97.7 0.17 3.7E-06 59.0 44.7 416 50-467 38-604 (608)
339 PRK15180 Vi polysaccharide bio 97.7 0.057 1.2E-06 56.7 28.1 128 7-134 297-424 (831)
340 PF04184 ST7: ST7 protein; In 97.7 0.0037 8.1E-08 66.2 20.0 144 39-195 174-321 (539)
341 PLN02410 UDP-glucoronosyl/UDP- 97.7 0.0005 1.1E-08 75.8 14.6 139 712-860 264-411 (451)
342 PRK13184 pknD serine/threonine 97.7 0.029 6.2E-07 66.6 29.5 100 5-105 481-590 (932)
343 KOG2041 WD40 repeat protein [G 97.7 0.13 2.8E-06 56.6 31.5 241 26-296 686-936 (1189)
344 PF10300 DUF3808: Protein of u 97.7 0.016 3.6E-07 64.4 26.1 118 217-334 247-377 (468)
345 PLN02670 transferase, transfer 97.7 0.00053 1.1E-08 75.7 14.0 140 712-860 278-430 (472)
346 KOG4642 Chaperone-dependent E3 97.7 0.00031 6.7E-09 66.5 10.2 92 39-130 16-107 (284)
347 COG1519 KdtA 3-deoxy-D-manno-o 97.7 0.00095 2.1E-08 69.7 14.9 256 601-874 112-401 (419)
348 KOG0530 Protein farnesyltransf 97.7 0.0055 1.2E-07 59.1 18.4 166 50-215 60-233 (318)
349 COG3118 Thioredoxin domain-con 97.7 0.0025 5.3E-08 63.2 16.4 161 33-194 134-297 (304)
350 PF13281 DUF4071: Domain of un 97.7 0.015 3.3E-07 61.0 23.2 99 33-131 141-256 (374)
351 KOG0545 Aryl-hydrocarbon recep 97.6 0.00087 1.9E-08 63.7 12.5 97 4-100 183-297 (329)
352 KOG0890 Protein kinase of the 97.6 0.39 8.4E-06 60.9 38.0 385 38-438 1388-1836(2382)
353 PF13524 Glyco_trans_1_2: Glyc 97.6 0.0001 2.2E-09 61.8 5.9 77 792-875 1-78 (92)
354 PLN02562 UDP-glycosyltransfera 97.6 0.0012 2.7E-08 72.9 15.9 144 712-867 273-421 (448)
355 PF13428 TPR_14: Tetratricopep 97.6 0.00013 2.9E-09 51.0 5.4 41 407-447 2-42 (44)
356 PRK12446 undecaprenyldiphospho 97.6 0.00081 1.7E-08 72.2 13.9 80 782-865 245-331 (352)
357 PF02684 LpxB: Lipid-A-disacch 97.6 0.00075 1.6E-08 71.6 13.3 161 703-873 175-354 (373)
358 PLN02554 UDP-glycosyltransfera 97.6 0.00092 2E-08 74.8 14.7 103 712-820 274-388 (481)
359 PLN00414 glycosyltransferase f 97.6 0.00092 2E-08 73.6 14.4 156 712-874 252-418 (446)
360 PF13428 TPR_14: Tetratricopep 97.6 0.00014 3E-09 50.9 5.2 42 373-414 2-43 (44)
361 PF10300 DUF3808: Protein of u 97.6 0.015 3.2E-07 64.9 23.8 120 317-436 246-377 (468)
362 PLN02173 UDP-glucosyl transfer 97.6 0.00089 1.9E-08 73.5 14.0 149 712-871 264-419 (449)
363 PLN00164 glucosyltransferase; 97.6 0.00075 1.6E-08 75.3 13.6 153 712-872 272-445 (480)
364 PLN02863 UDP-glucoronosyl/UDP- 97.6 0.00099 2.2E-08 74.1 14.4 103 712-819 283-388 (477)
365 KOG0376 Serine-threonine phosp 97.6 0.00011 2.5E-09 77.0 6.6 103 40-142 11-113 (476)
366 PF02259 FAT: FAT domain; Int 97.6 0.027 5.9E-07 61.0 25.7 165 167-336 144-341 (352)
367 PLN02764 glycosyltransferase f 97.6 0.0009 2E-08 73.2 13.8 155 712-873 257-422 (453)
368 KOG0545 Aryl-hydrocarbon recep 97.6 0.0013 2.7E-08 62.6 12.5 104 341-444 181-302 (329)
369 PLN02992 coniferyl-alcohol glu 97.6 0.0012 2.7E-08 72.9 14.7 139 712-859 263-427 (481)
370 PLN02208 glycosyltransferase f 97.5 0.0014 3.1E-08 72.0 14.7 153 711-874 250-417 (442)
371 KOG0530 Protein farnesyltransf 97.5 0.023 5.1E-07 55.0 20.5 124 15-138 59-184 (318)
372 PLN02448 UDP-glycosyltransfera 97.5 0.0016 3.5E-08 72.6 15.2 96 712-820 274-369 (459)
373 PLN02167 UDP-glycosyltransfera 97.5 0.0011 2.3E-08 74.2 13.6 102 712-819 280-385 (475)
374 PLN03015 UDP-glucosyl transfer 97.5 0.0015 3.3E-08 71.7 14.3 104 712-820 267-381 (470)
375 PF13281 DUF4071: Domain of un 97.5 0.012 2.7E-07 61.7 20.1 165 139-303 145-338 (374)
376 PF00201 UDPGT: UDP-glucoronos 97.5 0.0012 2.6E-08 75.4 14.0 138 711-868 275-418 (500)
377 KOG2041 WD40 repeat protein [G 97.5 0.13 2.8E-06 56.6 27.6 78 205-293 798-875 (1189)
378 PLN02207 UDP-glycosyltransfera 97.5 0.0014 3.1E-08 72.3 13.7 102 712-819 275-377 (468)
379 PF13431 TPR_17: Tetratricopep 97.5 0.00012 2.5E-09 47.7 3.1 32 395-426 2-33 (34)
380 PF02259 FAT: FAT domain; Int 97.5 0.034 7.4E-07 60.3 24.5 148 267-419 143-305 (352)
381 PLN03064 alpha,alpha-trehalose 97.5 0.0024 5.1E-08 75.5 15.9 153 712-876 362-545 (934)
382 COG3118 Thioredoxin domain-con 97.5 0.014 3.1E-07 58.0 18.6 161 67-228 134-297 (304)
383 PF07079 DUF1347: Protein of u 97.5 0.21 4.5E-06 52.6 43.6 417 35-464 8-519 (549)
384 KOG0376 Serine-threonine phosp 97.4 0.0002 4.4E-09 75.2 6.2 102 344-445 10-111 (476)
385 PHA03392 egt ecdysteroid UDP-g 97.4 0.0026 5.7E-08 71.5 15.6 139 713-868 297-441 (507)
386 PLN02555 limonoid glucosyltran 97.4 0.0025 5.4E-08 70.7 15.0 152 712-873 277-442 (480)
387 KOG1550 Extracellular protein 97.4 0.076 1.6E-06 60.8 27.1 80 252-336 455-541 (552)
388 PLN02152 indole-3-acetate beta 97.4 0.0032 7E-08 69.3 15.4 103 712-820 261-373 (455)
389 PF13431 TPR_17: Tetratricopep 97.4 0.00017 3.6E-09 46.9 3.0 32 361-392 2-33 (34)
390 PLN03007 UDP-glucosyltransfera 97.4 0.0027 5.9E-08 71.2 14.7 104 711-819 284-390 (482)
391 PLN02210 UDP-glucosyl transfer 97.4 0.0032 7E-08 69.8 15.0 138 712-860 269-416 (456)
392 PF02350 Epimerase_2: UDP-N-ac 97.4 0.00088 1.9E-08 71.4 10.1 150 710-883 178-336 (346)
393 PRK01021 lpxB lipid-A-disaccha 97.4 0.0032 7E-08 69.9 14.5 160 703-875 403-587 (608)
394 PLN02534 UDP-glycosyltransfera 97.3 0.0035 7.6E-08 69.7 14.6 102 712-820 283-390 (491)
395 PRK15180 Vi polysaccharide bio 97.3 0.16 3.4E-06 53.5 24.6 129 42-170 298-426 (831)
396 KOG0128 RNA-binding protein SA 97.3 0.53 1.1E-05 53.5 34.6 417 47-468 93-562 (881)
397 KOG1550 Extracellular protein 97.3 0.13 2.9E-06 58.8 26.6 276 49-370 228-541 (552)
398 PF08631 SPO22: Meiosis protei 97.2 0.32 6.9E-06 50.4 26.5 123 9-131 3-151 (278)
399 PF13528 Glyco_trans_1_3: Glyc 97.2 0.0053 1.2E-07 65.5 13.8 107 711-839 191-298 (318)
400 PF07719 TPR_2: Tetratricopept 97.2 0.00093 2E-08 43.6 5.0 33 407-439 2-34 (34)
401 KOG0551 Hsp90 co-chaperone CNS 97.2 0.011 2.3E-07 59.3 14.2 101 32-132 80-184 (390)
402 PF00515 TPR_1: Tetratricopept 97.2 0.00072 1.6E-08 44.2 4.3 32 407-438 2-33 (34)
403 PF04007 DUF354: Protein of un 97.2 0.053 1.2E-06 56.9 20.2 278 543-855 4-306 (335)
404 PF08631 SPO22: Meiosis protei 97.2 0.3 6.6E-06 50.5 25.8 25 409-433 249-273 (278)
405 PRK11619 lytic murein transgly 97.1 0.87 1.9E-05 52.8 41.9 403 3-433 37-466 (644)
406 PF03704 BTAD: Bacterial trans 97.1 0.012 2.6E-07 54.3 13.3 119 345-475 13-131 (146)
407 COG2976 Uncharacterized protei 97.1 0.026 5.7E-07 52.4 14.7 117 51-168 70-192 (207)
408 PF00515 TPR_1: Tetratricopept 97.1 0.0012 2.7E-08 43.0 4.7 32 373-404 2-33 (34)
409 COG0790 FOG: TPR repeat, SEL1 97.0 0.23 4.9E-06 52.1 24.2 79 355-438 172-269 (292)
410 PRK13184 pknD serine/threonine 97.0 0.49 1.1E-05 56.5 28.6 398 39-468 481-924 (932)
411 KOG1308 Hsp70-interacting prot 97.0 0.0007 1.5E-08 67.9 4.5 92 40-131 121-212 (377)
412 PF06258 Mito_fiss_Elm1: Mitoc 97.0 0.017 3.8E-07 60.1 14.6 211 608-839 53-278 (311)
413 KOG0551 Hsp90 co-chaperone CNS 97.0 0.027 5.9E-07 56.5 14.9 101 66-166 80-184 (390)
414 PF07719 TPR_2: Tetratricopept 96.9 0.002 4.2E-08 42.0 4.9 32 373-404 2-33 (34)
415 PF08424 NRDE-2: NRDE-2, neces 96.9 0.059 1.3E-06 57.0 18.5 165 20-200 6-185 (321)
416 PF03704 BTAD: Bacterial trans 96.9 0.018 3.8E-07 53.2 13.0 113 310-434 12-124 (146)
417 KOG2941 Beta-1,4-mannosyltrans 96.9 0.0099 2.1E-07 59.8 10.8 125 739-873 290-423 (444)
418 COG0790 FOG: TPR repeat, SEL1 96.8 0.52 1.1E-05 49.4 25.0 181 45-234 53-268 (292)
419 KOG1308 Hsp70-interacting prot 96.8 0.0015 3.2E-08 65.6 4.6 88 350-437 126-213 (377)
420 COG2909 MalT ATP-dependent tra 96.8 1.6 3.5E-05 50.4 33.2 231 134-364 414-685 (894)
421 PF01075 Glyco_transf_9: Glyco 96.7 0.0017 3.6E-08 66.4 4.8 210 603-828 3-218 (247)
422 COG2976 Uncharacterized protei 96.7 0.096 2.1E-06 48.8 15.3 94 206-300 92-189 (207)
423 PF08424 NRDE-2: NRDE-2, neces 96.7 0.11 2.5E-06 54.8 18.4 164 54-233 6-184 (321)
424 KOG3783 Uncharacterized conser 96.7 0.76 1.7E-05 49.9 23.9 307 121-440 179-525 (546)
425 TIGR00661 MJ1255 conserved hyp 96.6 0.046 1E-06 58.2 15.3 67 769-839 228-295 (321)
426 COG0297 GlgA Glycogen synthase 96.6 0.012 2.6E-07 64.7 10.5 113 703-820 282-400 (487)
427 COG2909 MalT ATP-dependent tra 96.5 2.4 5.1E-05 49.1 33.8 292 33-330 347-685 (894)
428 KOG1538 Uncharacterized conser 96.5 0.34 7.4E-06 53.0 20.0 21 140-160 637-657 (1081)
429 KOG0128 RNA-binding protein SA 96.5 2.4 5.2E-05 48.5 35.9 411 16-431 96-559 (881)
430 PF13181 TPR_8: Tetratricopept 96.5 0.0053 1.1E-07 40.0 4.1 32 407-438 2-33 (34)
431 COG5159 RPN6 26S proteasome re 96.4 1.1 2.3E-05 44.4 20.8 53 3-55 7-67 (421)
432 PF04781 DUF627: Protein of un 96.4 0.034 7.3E-07 46.7 9.2 103 5-130 2-107 (111)
433 COG0381 WecB UDP-N-acetylgluco 96.3 0.067 1.4E-06 55.9 13.3 301 536-868 3-350 (383)
434 COG1817 Uncharacterized protei 96.3 0.25 5.3E-06 49.7 16.1 278 542-861 3-316 (346)
435 COG0763 LpxB Lipid A disacchar 96.2 0.05 1.1E-06 56.6 11.8 164 699-872 174-357 (381)
436 KOG1464 COP9 signalosome, subu 96.2 0.31 6.8E-06 47.5 16.1 17 534-550 362-378 (440)
437 PRK11619 lytic murein transgly 96.2 3.7 8E-05 47.8 41.5 402 34-463 34-462 (644)
438 PF09613 HrpB1_HrpK: Bacterial 96.1 0.28 6E-06 44.7 14.5 81 37-117 14-94 (160)
439 TIGR02195 heptsyl_trn_II lipop 96.1 0.028 6.1E-07 60.3 9.9 116 705-828 166-286 (334)
440 PF04910 Tcf25: Transcriptiona 96.1 0.32 6.9E-06 52.0 17.4 168 26-201 33-225 (360)
441 TIGR02201 heptsyl_trn_III lipo 96.1 0.058 1.3E-06 58.1 12.1 115 708-828 178-295 (344)
442 KOG1464 COP9 signalosome, subu 96.1 0.41 8.9E-06 46.7 16.0 50 46-95 40-93 (440)
443 PRK10422 lipopolysaccharide co 96.0 0.049 1.1E-06 58.8 11.4 116 708-828 180-297 (352)
444 PF13181 TPR_8: Tetratricopept 96.0 0.012 2.5E-07 38.3 4.1 30 374-403 3-32 (34)
445 KOG2396 HAT (Half-A-TPR) repea 96.0 3 6.4E-05 45.0 40.7 101 335-435 457-559 (568)
446 KOG2114 Vacuolar assembly/sort 96.0 4.2 9.1E-05 46.7 27.6 110 40-156 341-452 (933)
447 PF13176 TPR_7: Tetratricopept 95.9 0.0082 1.8E-07 39.6 2.8 27 409-435 2-28 (36)
448 COG4649 Uncharacterized protei 95.9 0.95 2.1E-05 41.4 16.3 120 44-163 69-195 (221)
449 PF13174 TPR_6: Tetratricopept 95.9 0.014 2.9E-07 37.6 3.8 31 408-438 2-32 (33)
450 COG1747 Uncharacterized N-term 95.8 3.6 7.8E-05 44.4 26.7 226 66-338 65-293 (711)
451 cd03789 GT1_LPS_heptosyltransf 95.8 0.19 4.2E-06 52.2 14.2 96 726-828 138-233 (279)
452 COG4649 Uncharacterized protei 95.7 1.1 2.4E-05 40.9 16.1 132 180-312 69-208 (221)
453 PF04910 Tcf25: Transcriptiona 95.7 0.58 1.3E-05 50.1 17.4 127 94-228 33-164 (360)
454 KOG3783 Uncharacterized conser 95.7 0.46 1E-05 51.5 16.1 88 18-107 252-343 (546)
455 KOG1192 UDP-glucuronosyl and U 95.6 0.12 2.6E-06 59.0 13.1 103 712-824 277-388 (496)
456 PRK10916 ADP-heptose:LPS hepto 95.6 0.076 1.6E-06 57.3 10.8 111 712-828 181-296 (348)
457 KOG1538 Uncharacterized conser 95.6 0.48 1E-05 52.0 16.0 226 4-263 590-844 (1081)
458 PF13174 TPR_6: Tetratricopept 95.6 0.021 4.6E-07 36.6 3.9 28 37-64 4-31 (33)
459 PF14561 TPR_20: Tetratricopep 95.5 0.13 2.9E-06 42.3 9.1 64 392-455 8-73 (90)
460 KOG1463 26S proteasome regulat 95.4 3.2 7E-05 42.4 19.7 164 274-437 132-318 (411)
461 KOG3824 Huntingtin interacting 95.3 0.058 1.3E-06 53.4 7.5 68 380-447 124-191 (472)
462 TIGR02561 HrpB1_HrpK type III 95.3 0.72 1.6E-05 41.2 13.3 77 6-82 17-93 (153)
463 COG5159 RPN6 26S proteasome re 95.2 3.6 7.7E-05 40.9 21.1 197 37-233 7-236 (421)
464 KOG3824 Huntingtin interacting 95.2 0.057 1.2E-06 53.4 7.0 68 347-414 125-192 (472)
465 PF09613 HrpB1_HrpK: Bacterial 95.1 1.1 2.4E-05 40.9 14.4 94 343-437 15-108 (160)
466 PF04781 DUF627: Protein of un 95.0 0.2 4.3E-06 42.2 8.8 103 39-164 2-107 (111)
467 PF14561 TPR_20: Tetratricopep 94.9 0.25 5.4E-06 40.7 9.2 66 358-423 8-75 (90)
468 PF14853 Fis1_TPR_C: Fis1 C-te 94.9 0.12 2.6E-06 37.3 6.2 33 36-68 4-36 (53)
469 PRK10941 hypothetical protein; 94.9 0.25 5.4E-06 50.1 10.8 67 342-408 185-251 (269)
470 PRK10941 hypothetical protein; 94.8 0.18 3.9E-06 51.1 9.7 70 374-443 183-252 (269)
471 PF13041 PPR_2: PPR repeat fam 94.8 0.018 3.9E-07 41.5 1.8 46 440-492 3-48 (50)
472 TIGR02094 more_P_ylases alpha- 94.7 0.42 9.2E-06 54.8 13.4 115 710-825 386-516 (601)
473 PF13176 TPR_7: Tetratricopept 94.6 0.061 1.3E-06 35.4 4.0 25 375-399 2-26 (36)
474 PF14853 Fis1_TPR_C: Fis1 C-te 94.6 0.12 2.7E-06 37.3 5.8 41 2-42 4-44 (53)
475 KOG1463 26S proteasome regulat 94.6 6.1 0.00013 40.5 22.3 162 139-300 132-317 (411)
476 KOG2114 Vacuolar assembly/sort 94.4 12 0.00027 43.2 27.3 245 6-270 341-595 (933)
477 PF07429 Glyco_transf_56: 4-al 94.2 1 2.2E-05 46.5 13.2 122 713-843 187-314 (360)
478 cd04299 GT1_Glycogen_Phosphory 94.0 0.5 1.1E-05 55.5 12.2 115 710-826 475-606 (778)
479 COG4976 Predicted methyltransf 93.9 0.092 2E-06 50.0 4.9 60 381-440 4-63 (287)
480 PF04101 Glyco_tran_28_C: Glyc 93.9 0.098 2.1E-06 49.5 5.4 94 770-869 55-154 (167)
481 COG3914 Spy Predicted O-linked 93.9 2.5 5.4E-05 46.5 16.1 131 289-419 50-189 (620)
482 PF12968 DUF3856: Domain of Un 93.8 2 4.3E-05 36.6 11.8 90 4-93 14-126 (144)
483 TIGR02561 HrpB1_HrpK type III 93.8 2.9 6.4E-05 37.5 13.6 72 351-422 23-94 (153)
484 PF05159 Capsule_synth: Capsul 93.6 0.18 3.8E-06 52.1 7.1 93 725-824 138-230 (269)
485 smart00028 TPR Tetratricopepti 93.6 0.1 2.2E-06 32.7 3.6 31 408-438 3-33 (34)
486 PF04053 Coatomer_WDAD: Coatom 93.6 3.6 7.8E-05 45.4 17.4 130 70-228 298-427 (443)
487 PF12968 DUF3856: Domain of Un 93.6 2 4.4E-05 36.5 11.6 86 349-434 20-128 (144)
488 COG1747 Uncharacterized N-term 93.6 13 0.00028 40.4 26.1 93 204-298 67-159 (711)
489 COG0859 RfaF ADP-heptose:LPS h 93.6 0.48 1E-05 50.6 10.4 105 712-825 176-283 (334)
490 PF04053 Coatomer_WDAD: Coatom 93.5 2.4 5.1E-05 46.8 15.7 27 101-127 347-373 (443)
491 PRK14089 ipid-A-disaccharide s 93.5 0.43 9.4E-06 50.6 9.7 78 724-818 183-260 (347)
492 KOG3807 Predicted membrane pro 93.3 9.7 0.00021 38.7 17.8 190 244-445 192-401 (556)
493 KOG3364 Membrane protein invol 93.3 0.83 1.8E-05 39.9 9.1 74 370-443 30-108 (149)
494 TIGR03609 S_layer_CsaB polysac 93.2 12 0.00027 39.1 21.5 103 726-839 186-292 (298)
495 PF13041 PPR_2: PPR repeat fam 93.1 0.43 9.4E-06 34.2 6.4 43 405-447 2-44 (50)
496 smart00028 TPR Tetratricopepti 92.9 0.18 3.8E-06 31.6 3.9 30 374-403 3-32 (34)
497 KOG2422 Uncharacterized conser 92.8 6.1 0.00013 43.4 16.8 100 114-213 251-387 (665)
498 COG5191 Uncharacterized conser 92.7 0.22 4.7E-06 49.6 5.5 76 334-409 103-179 (435)
499 COG5191 Uncharacterized conser 92.6 0.25 5.3E-06 49.3 5.8 89 361-449 96-185 (435)
500 PF09986 DUF2225: Uncharacteri 92.4 1.3 2.9E-05 43.3 10.8 87 352-438 91-197 (214)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-161 Score=1225.79 Aligned_cols=880 Identities=55% Similarity=0.910 Sum_probs=865.3
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
++++|...++.|+|++|++....+...+|.+.+.+..++.++++..++++....-..+++.+|.-.++|.++|+++...|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (887)
++++|+..|+.+++++|++.++|.+++.++...|+.+.|..+|..+++++|....+...+|.++..+|+..+|..+|.++
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHh
Q 002729 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG 240 (887)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 240 (887)
++..|..+.+|.+||.++..+|+...|+..|+++++++|+..++|.++|.+|...+.+++|+..|.+++...|+ ..++.
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~g 290 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHG 290 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred hHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCCh
Q 002729 241 NLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (887)
Q Consensus 241 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 320 (887)
+++.+|+++|..+-|+..|+++++..|+.+++|.+++.++...|+..+|..+|.+++.+.|+.+++.++||.+|.++|++
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 321 PAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (887)
Q Consensus 321 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (887)
++|..+|+++++..|+.+.+.++||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+.|+++|.+++.
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCC
Q 002729 401 IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLP 480 (887)
Q Consensus 401 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p 480 (887)
.+|..++++.+||.+|...|+..+|+..|++++++.|+.+++++|++.+++..++|.+..+.++++.+++++++.....|
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlp 530 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLP 530 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCcCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHHhhhHHhh
Q 002729 481 SVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFG 560 (887)
Q Consensus 481 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lriGyvs~d~~~h~~~~~~~~~~~ 560 (887)
++.|+++++|+++|....+++++++.+|......++.||+.||...| .+.+|||||||||||++||+++++.+++.
T Consensus 531 svhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~----~~~~rlrIGYvSsDFgnHp~Shlmqsv~g 606 (966)
T KOG4626|consen 531 SVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLK----VKEGRLRIGYVSSDFGNHPTSHLMQSVPG 606 (966)
T ss_pred ccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCC----CCcCceEEEeecccccCCchHHHhccCcC
Confidence 99999999999999999999999999999999999999999988766 34589999999999999999999999999
Q ss_pred cCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEE
Q 002729 561 MHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQV 640 (887)
Q Consensus 561 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~ 640 (887)
+||++++|||||+.+++++..++.++.....||+|+++++...+|..|++|+|||||.+.|||.|+|..+|++|||||||
T Consensus 607 mHdr~kveVfcYals~~d~t~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarneifAlrPAPIQv 686 (966)
T KOG4626|consen 607 MHDRSKVEVFCYALSVNDGTNFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEIFALRPAPIQV 686 (966)
T ss_pred cCCccceEEEEEEeecCCCchHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccceeeccCCceeE
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecC
Q 002729 641 SYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFN 720 (887)
Q Consensus 641 ~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~ 720 (887)
+|+|||+|||.++|||+|+|.++.|++....|+|+|++||+||+++++.+...++.+|...|+|.++|||+|+|||||||
T Consensus 687 ~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp~d~vvf~~FN 766 (966)
T KOG4626|consen 687 MWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLPEDAVVFCNFN 766 (966)
T ss_pred EeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCCCCeEEEeech
Confidence 99999999999999999999999999999999999999999999999998877888888889999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCC
Q 002729 721 QLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCN 800 (887)
Q Consensus 721 ~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~ 800 (887)
+++|++|.++..|++||++||+|+||++.++..++++++..+++.|++++||+|.+....+||+++++.+||+|||++++
T Consensus 767 qLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcn 846 (966)
T KOG4626|consen 767 QLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCN 846 (966)
T ss_pred hhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCC
Q 002729 801 AHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLF 880 (887)
Q Consensus 801 g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~ 880 (887)
|+||++|.||+|||+|||+|+++++||++|+|..+|+++ +|+.+.|||+++||+|++|.+.++.+|.++|..+..||||
T Consensus 847 GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak~~eEY~~iaV~Latd~~~L~~lr~~l~~~r~~splf 925 (966)
T KOG4626|consen 847 GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAKNREEYVQIAVRLATDKEYLKKLRAKLRKARASSPLF 925 (966)
T ss_pred CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhhhHHHHHHHHHHhhcCHHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CcCCcc
Q 002729 881 DTARWV 886 (887)
Q Consensus 881 d~~~~~ 886 (887)
|+++|+
T Consensus 926 d~~q~~ 931 (966)
T KOG4626|consen 926 DTKQYA 931 (966)
T ss_pred CchHHH
Confidence 999986
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-103 Score=804.21 Aligned_cols=521 Identities=32% Similarity=0.511 Sum_probs=447.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcHHHHHHH------HHHHH
Q 002729 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR-AITIRPTMAEAHANL------ASAYK 417 (887)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~ 417 (887)
...+...+....+.-.+...+..+|++..+..+++......|....+...+.. +....|++......+ +....
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 44455566777777777778888888888888888777777766666655555 677777776665555 78888
Q ss_pred hCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhH--hHHHHHHHHHHHHHhccCCCCCCCCcccccCcCCHH
Q 002729 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDR--DRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPM 495 (887)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a--~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 495 (887)
.+|+..++....+++.++.|+++.+...++......++|.+- ..++...... -...+|..+.+..++.
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~~~~~tnl~~~~~~~----------~~~~~~~~~~~~d~p~ 223 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWPEEAPTNLLSQLALF----------LGIYGFSLAYLADDPL 223 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccchhccchHHHHHHHHH----------hhccccchhhhccchh
Confidence 888999999999999999999999998888888888887621 1111111111 0112344455556677
Q ss_pred HHHHHHHHHHhhhhhhhhccCCCCCCCCCCCccccCCCcccceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecC
Q 002729 496 LALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALS 575 (887)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~ 575 (887)
....++.++.+.+....+ ..+++..+. . +....++|+||||+|+||+.|+||+++++++++|||++||||+|+.+
T Consensus 224 ~~l~~~~q~~~i~~~~~~--~~~~~~~~~-~--~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g 298 (620)
T COG3914 224 KNLAIANQLLKILSQNAP--ELVRFPIRD-E--NIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLG 298 (620)
T ss_pred hhHHHHHHHHHHhcccCC--Cccccccch-h--hccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecC
Confidence 788888888776553222 112221111 1 12355789999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCccc
Q 002729 576 PNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID 655 (887)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d 655 (887)
+...+..+.+|+..+++|.++.+|++.++|.+|+.|+||||||++|||..+|++||++|||||||||+|||+|+|+|.||
T Consensus 299 ~~~~dal~~rI~a~~~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAPiqvswlGy~aT~g~p~~D 378 (620)
T COG3914 299 PPHTDALQERISAAVEKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAPIQVSWLGYPATTGSPNMD 378 (620)
T ss_pred CCCchhHHHHHHHhhhheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCceEEeecccccccCCCcce
Confidence 77778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHH
Q 002729 656 YLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCN 735 (887)
Q Consensus 656 ~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~ 735 (887)
|||+|+++.||+++.+|+|+|||||.||+..+... +..++++|++.|||++++||+|||+.+|++|+++++|++
T Consensus 379 Y~I~D~y~vPp~ae~yysEkl~RLp~cy~p~d~~~------~v~p~~sR~~lglp~~avVf~c~~n~~K~~pev~~~wmq 452 (620)
T COG3914 379 YFISDPYTVPPTAEEYYSEKLWRLPQCYQPVDGFE------PVTPPPSRAQLGLPEDAVVFCCFNNYFKITPEVFALWMQ 452 (620)
T ss_pred EEeeCceecCchHHHHHHHHHHhcccccCCCCCcc------cCCCCcchhhcCCCCCeEEEEecCCcccCCHHHHHHHHH
Confidence 99999999999999999999999999998877542 234457999999999999999999999999999999999
Q ss_pred HHhhcCCceEEEecC--ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCC
Q 002729 736 ILRRVPNSALWLLRF--PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGL 813 (887)
Q Consensus 736 il~~~p~~~l~~~~~--~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gv 813 (887)
||+++|+|+|||.++ .+...++|+..|++.||+.+|++|.|..+.++|.++|..+||+||||||+||||++|||||||
T Consensus 453 IL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~v 532 (620)
T COG3914 453 ILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGV 532 (620)
T ss_pred HHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcC
Confidence 999999999999987 455678999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCCcCCccC
Q 002729 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS 887 (887)
Q Consensus 814 Pvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 887 (887)
||||+.|++|++|+|+||++++|++| +||+|.++||++||++++|...+++.|..++..+.+|||||++.|+|
T Consensus 533 PVlT~~G~~FasR~~~si~~~agi~e-~vA~s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far 605 (620)
T COG3914 533 PVLTRVGEQFASRNGASIATNAGIPE-LVADSRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFAR 605 (620)
T ss_pred ceeeeccHHHHHhhhHHHHHhcCCch-hhcCCHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHH
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999975
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=1e-96 Score=773.88 Aligned_cols=350 Identities=50% Similarity=0.865 Sum_probs=288.4
Q ss_pred ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCC-HHHHHHHHHhCCCeE
Q 002729 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-SDMIAKLINEDKIQI 615 (887)
Q Consensus 537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~di 615 (887)
|||||||+||++||+++|+.+++++||+++|||+||+.++.+++.++++++..+++|+++.+++ +.++|++|++|+|||
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~~~~~~~~dl~~~~~~~~~A~~Ir~D~IDI 80 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIRAEADHFVDLSGLSDDAEAAQRIRADGIDI 80 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHHHHSEEEEEEEE-TTSHHHHHHHHHTT-SE
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHHHhCCeEEECccCCcHHHHHHHHHHCCCCE
Confidence 7999999999999999999999999999999999999999887788999999999999999987 689999999999999
Q ss_pred EEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecCCccccCCCccccc--
Q 002729 616 LINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNM-- 693 (887)
Q Consensus 616 l~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~-- 693 (887)
||||+|||.|+|+.+|++|||||||+|||||+|||++.|||+|+|++++|++.+.+|+|||+|||++|+|+++....+
T Consensus 81 LVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~~~~~ 160 (468)
T PF13844_consen 81 LVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQMFPHL 160 (468)
T ss_dssp EEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH-GGG
T ss_pred EEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998763110
Q ss_pred --------------------------------------------------------------------------------
Q 002729 694 -------------------------------------------------------------------------------- 693 (887)
Q Consensus 694 -------------------------------------------------------------------------------- 693 (887)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (468)
T PF13844_consen 161 KERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIASGQVQ 240 (468)
T ss_dssp SS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHHT-SE
T ss_pred hhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHcCCee
Confidence
Q ss_pred -------------------------cCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEe
Q 002729 694 -------------------------DVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL 748 (887)
Q Consensus 694 -------------------------~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~ 748 (887)
.++.....++|+++|||++++||||||+++|++|+++++|++||+++|+|+|||.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~ 320 (468)
T PF13844_consen 241 TSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLL 320 (468)
T ss_dssp EEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEE
T ss_pred EeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEe
Confidence 0000001238999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729 749 RFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 749 ~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
.++...++++++.++++||+++||+|.+..+.++|+.+|+.+||+|||||||||||++|||||||||||++|++++||+|
T Consensus 321 ~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~ 400 (468)
T PF13844_consen 321 RFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVG 400 (468)
T ss_dssp ETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHH
T ss_pred eCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHH
Confidence 88877788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCCcCCccC
Q 002729 829 GSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS 887 (887)
Q Consensus 829 ~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 887 (887)
+|+|+++|++| |||.|.++||++|++|++|++.|+++|++||+++.+|||||+++|++
T Consensus 401 aSiL~~lGl~E-lIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar 458 (468)
T PF13844_consen 401 ASILRALGLPE-LIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFAR 458 (468)
T ss_dssp HHHHHHHT-GG-GB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHH
T ss_pred HHHHHHcCCch-hcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999874
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-46 Score=386.36 Aligned_cols=438 Identities=31% Similarity=0.440 Sum_probs=428.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (887)
.......++.-.++.|+|++|++....+-..+|.+.+....++.++++..++++....-..+++..|...+++.++|.++
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 34557788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 002729 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQY 191 (887)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 191 (887)
...|++++|+..|+.++++.|+..++|.++|.++..+|+.+.|..+|..+++++|....+...+|.++...|+..+|...
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002729 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (887)
Q Consensus 192 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (887)
|.++++..|....+|.++|.++...|+...|+..|+++++++|+ ..+|.++|.+|...+.+++|+..|.+++...|+..
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHH
Q 002729 271 EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ 350 (887)
Q Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 350 (887)
.++.+++.+|.++|..+-|+..|+++++..|+.++++.+++.++...|+..+|..+|.+++...|+.+.+.++||.+|.+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002729 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (887)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (887)
+|++++|..+|+++++..|+...++.++|.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+...|++.|.
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729 431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (887)
Q Consensus 431 ~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (887)
+++..+|...+++.||+..+-..|+..+|...++++.++
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988873
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-39 Score=402.75 Aligned_cols=462 Identities=23% Similarity=0.288 Sum_probs=351.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (887)
.++..+.+.|++++|+..++++....|.++..+..+|.++...|++++|++.|+++++.+|++..++..++.++...|++
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 34555666666666666666666666666777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (887)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (887)
++|++.|+++++.+|++..++..++.++...|++++|...++++++.+|.+...+..++..+...|++++|+..++++++
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhH
Q 002729 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNL 242 (887)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 242 (887)
..|.+...|..++.++...|++++|+..++++++..|.++..+..++.++...|++++|...|+++++..|+ ...+..+
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777777766 6677777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhH
Q 002729 243 ASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPA 322 (887)
Q Consensus 243 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 322 (887)
+.++...|++++|+..++.+.+..|.....+..+|.++...|++++|++.|+++++..|++ ..+..++.++...|++++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHH
Confidence 7777777777777777777777777777777777777777777777777777777777766 566677777777888888
Q ss_pred HHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 323 AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (887)
Q Consensus 323 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (887)
|...++++++..|++..++..++.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+..++++++..
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 88888887777777777788888888888888888888888888888888888888888888887 77888888888888
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHH
Q 002729 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVE 467 (887)
Q Consensus 403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 467 (887)
|+++.++..+|.++...|++++|.++|+++++.+|.++.++.+++..+...|++++|...++++.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88877888888888888888888888888888888888888888888888888777777776654
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-38 Score=393.33 Aligned_cols=465 Identities=23% Similarity=0.254 Sum_probs=308.9
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---------------- 65 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------- 65 (887)
+..++..+...|++++|+..|+++++.+|++...+..+|.++...|++++|++.++++++.+|.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 3456777777777777777777777777777777777777777777777777777766666554
Q ss_pred ------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 66 ------------------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (887)
Q Consensus 66 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (887)
++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|.+.++++
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 525 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKV 525 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002729 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL 207 (887)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (887)
++.+|.+..++..++.++...|++++|...++++++.+|.+...+..++..+...|++++|+..++++++..|.++..+.
T Consensus 526 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 605 (899)
T TIGR02917 526 LTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605 (899)
T ss_pred HHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 55555555555555555555556666666665555555555555555666666666666666666666666666666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729 208 NLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286 (887)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 286 (887)
.++.++...|++++|+..|+++++..|+ ...+..++.++...|++++|...++++++.+|++..++..++.++...|++
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666666665554 555566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366 (887)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 366 (887)
++|...++.+.+..|.++..+..+|.++...|++++|...|++++...|++ ..+..++.++...|++++|++.++++++
T Consensus 686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666666666777777777777777777777666665 5566667777777777777777777777
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (887)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (887)
.+|++..+++.+|.++...|++++|++.|+++++..|+++.++..++.++...|+ .+|+.+++++++..|+++..+..+
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ 843 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTL 843 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777 667777777777777777777777
Q ss_pred HHHhhhcCChhhHhHHHHHHHH
Q 002729 447 LHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 447 ~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
+..+...|++++|...++++.+
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777777776666655
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.7e-36 Score=373.66 Aligned_cols=467 Identities=16% Similarity=0.107 Sum_probs=365.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHH-----------
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECY----------- 70 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------- 70 (887)
++.+++.+...++.+.|.+.+++++..+|+++.++..++.++...|+.++|.+.++++++.+|+++.+.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 567888999999999999999999999999999999999999999999999999999999999987653
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729 71 -----GNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (887)
Q Consensus 71 -----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (887)
..+|..+...|++++|++.|+++++.+|.+... ...+..+....|++++|+..++++++.+|++..++..++.+
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 566778899999999999999999988876542 22223333346899999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCC----------------------------------ChHHH-------------------
Q 002729 145 MKAQGLVQEAYSCYLEALRIQP----------------------------------TFAIA------------------- 171 (887)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~~------------------- 171 (887)
+...|++++|+..++++++..+ +....
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999988754322 11100
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh-------------
Q 002729 172 -WSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI------------- 237 (887)
Q Consensus 172 -~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------------- 237 (887)
...++..+...|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++..|+..
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 012366778889999999999999999999999999999999999999999999999999887621
Q ss_pred --HHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHH---
Q 002729 238 --AFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN--- 312 (887)
Q Consensus 238 --~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--- 312 (887)
....++..+...|++++|+..|++++..+|++..++..+|.++...|++++|++.|+++++.+|++..++..++.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 123447788889999999999999999999999999999999999999999999999999999988766554443
Q ss_pred ---------------------------------------HHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCC
Q 002729 313 ---------------------------------------IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGN 353 (887)
Q Consensus 313 ---------------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 353 (887)
.+...|++++|+..|+++++.+|+++.++..++.+|.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHH-------------------------------------------------------
Q 002729 354 YADAISCYNEVLRIDPLAADGLVNR------------------------------------------------------- 378 (887)
Q Consensus 354 ~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------------------------- 378 (887)
+++|+..++++++.+|.++..++.+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 9999999999988888776655444
Q ss_pred -------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729 379 -------------------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 379 -------------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (887)
|.++.+.|++++|++.|+++++.+|+++.++..++.+|...|++++|++.++++++..|++
T Consensus 591 eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~ 670 (1157)
T PRK11447 591 EAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDS 670 (1157)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCC
Confidence 4444445555555555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
+.++..++.++...|++++|...++++..
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555544433
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.5e-36 Score=374.31 Aligned_cols=466 Identities=18% Similarity=0.135 Sum_probs=403.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTD-NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
+.+|..+...|++++|++.|+++++.+|.+.. +...........|++++|++.++++++.+|+++.++..+|.++...|
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 56788899999999999999999998887653 22233333445699999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCC----------------------------------CcHH---H-----------------HHHH
Q 002729 82 DIDLAIRYYLVAIELRP----------------------------------NFAD---A-----------------WSNL 107 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p----------------------------------~~~~---~-----------------~~~l 107 (887)
++++|+..++++++..+ +... + ...+
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865332 1110 0 0123
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH--------------HHH
Q 002729 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------------AWS 173 (887)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~ 173 (887)
|.++...|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++.+|++.. ...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 677888999999999999999999999999999999999999999999999999999887642 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhh-----------
Q 002729 174 NLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN----------- 241 (887)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~----------- 241 (887)
.++..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|+ ..++..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 45778889999999999999999999999999999999999999999999999999998887 333332
Q ss_pred -------------------------------HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002729 242 -------------------------------LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290 (887)
Q Consensus 242 -------------------------------la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 290 (887)
++..+...|++++|++.|+++++.+|++..+++.++.++...|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHH----------------------------------------
Q 002729 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT---------------------------------------- 330 (887)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------------------------------- 330 (887)
..++++++..|+++..++.++..+...+++++|+..++++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999998888887777777777777665542
Q ss_pred HhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (887)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (887)
++..|.++..+..+|.++.+.|++++|+..|+++++.+|+++.++..++.++...|++++|++.++++++..|++..++.
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 22467788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCChH------HHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 411 NLASAYKDSGHVEAAIKSYKQALLLRPDFPE------ATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
.+|.++...|++++|.+.|+++++..|+++. ++..++..+...|++++|...|+++..
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999998876543 455667888899999999999988854
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=8.6e-35 Score=337.32 Aligned_cols=433 Identities=15% Similarity=0.158 Sum_probs=340.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
..+|..+++.|+|++|+..|++++...|+ +..+..+|.+|..+|++++|++.++++++.+|++..+++.+|.+|..+|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 45678888888888888888888888874 66788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
+++|+..|..+...++.+......+...... ..+.......++..|.+...+..++..+.. .....+...+....
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKPRPAGLEDSN 284 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCcchhhhhccc
Confidence 8888888877766655433322222111111 344555566666666665555555554422 22333333344444
Q ss_pred hhCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-
Q 002729 163 RIQPTFAIAWSNLAGLFM---ESGDLNRALQYYKEAVKLK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN- 235 (887)
Q Consensus 163 ~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 235 (887)
+.++.....+..++..+. ..+++++|++.|+++++.+ |....++..+|.++...|++++|+..|+++++.+|+
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 455554444555554432 3478899999999998764 666778899999999999999999999999999888
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (887)
...+..++.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++.+|++...+..+|.++.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH------HHHHHHHH-HHcCCH
Q 002729 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG------LVNRGNTY-KEIGRV 388 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~-~~~g~~ 388 (887)
+.|++++|+..|++++...|+++..++.+|.++...|++++|++.|++++++.|..... +...+..+ ...|++
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999988864332 22233333 346899
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
++|++.++++++++|++..++..+|.++...|++++|+++|++++++.+...+
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999889999999999999999999999999998876554
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=4.3e-34 Score=331.48 Aligned_cols=433 Identities=17% Similarity=0.203 Sum_probs=367.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
...+..+|..++..|+|++|+..|+++++..|+ +..+..+|.+|...|++++|+..++++++.+|++..++..+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (887)
.+|++++|+..|..+...++.+......+...... ..+.......++..|.+...+..++..+. ......+...+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 280 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQ-SFRPKPRPAGL 280 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH-HccCCcchhhh
Confidence 99999999999988877765544322222211111 34555666677777777666666666442 22333333444
Q ss_pred HHHHhhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhC---CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc
Q 002729 193 KEAVKLKPTFPDAYLNLGNVYK---ALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (887)
Q Consensus 193 ~~~l~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~---p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 265 (887)
....+.++.....+..++..+. ..+++++|++.|+++++.. |+ ..++..++.++...|++++|+..++++++.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555555655555555554433 3478999999999999864 44 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHH
Q 002729 266 DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345 (887)
Q Consensus 266 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 345 (887)
+|+....+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+|++...+..+|
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH------HHH-HHHHHh
Q 002729 346 VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH------ANL-ASAYKD 418 (887)
Q Consensus 346 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~l-a~~~~~ 418 (887)
.++.++|++++|+..|+++++..|.++.++..+|.++...|++++|++.|++++++.|++...+ ... +..+..
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998753322 222 334445
Q ss_pred CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHH
Q 002729 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 471 (887)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (887)
.|++++|++.++++++++|++..++..++.++...|++++|...|+++.++.+
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999988654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3.4e-32 Score=319.00 Aligned_cols=456 Identities=17% Similarity=0.086 Sum_probs=329.4
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
+|..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|.+...+..++.+ +
T Consensus 47 ~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~ 122 (987)
T PRK09782 47 RLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----P 122 (987)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----c
Confidence 467788888889999999999999999999999999999999999999999999999999999998888888666 9
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHH--------HHH--------------------------------cCChHHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASA--------YMR--------------------------------KGRLNEAA 121 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~--------~~~--------------------------------~g~~~~A~ 121 (887)
++++|+..|+++++.+|++.+++..++.. |.+ +|++++|+
T Consensus 123 ~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 123 VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999999999999988777666665 333 44444444
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 002729 122 QCCRQALALNPLLVDAHSNLGNLMKA-QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK- 199 (887)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~- 199 (887)
..++++.+.+|.+......++.+|.. +++ +++..+++..++ .++.++..++..|.+.|+.++|.+.+++.-...
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 44444444444444444444444444 233 444444332111 334444455555555555555554443321110
Q ss_pred --------------------------------------------------------------------------------
Q 002729 200 -------------------------------------------------------------------------------- 199 (887)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (887)
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence
Q ss_pred --------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------------------------------
Q 002729 200 --------------PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------------------------------- 232 (887)
Q Consensus 200 --------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------------- 232 (887)
|.+...+..++......|+.++|..+|+++...
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 112222333334444455555555555443320
Q ss_pred --------------------------------CC---ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729 233 --------------------------------RP---NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLG 277 (887)
Q Consensus 233 --------------------------------~p---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 277 (887)
.| +...+..+|.++.. ++.++|+..+.+++...|+.. ....++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA 516 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVA 516 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHH
Confidence 01 23456788888776 788888888888888888754 355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHH
Q 002729 278 NALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADA 357 (887)
Q Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 357 (887)
.++...|++++|+..++++....|. ...+..+|.++.+.|++++|..+++++++..|+....+..++......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 6667888888888888887665444 345677788888888888888888888888877776666666666667888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (887)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (887)
+..++++++.+|+ +..+..+|.++.+.|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++.+|
T Consensus 596 l~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 596 LNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 8888888888885 778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729 438 DFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (887)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (887)
+++.++++++.++...|+.++|...++++.++
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888888888888888888888877777654
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=299.63 Aligned_cols=468 Identities=19% Similarity=0.245 Sum_probs=295.1
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (887)
++..|...+..|+|..|+.+|++++..+|.. ++....+|.|+.++|+.+.|+..|+++++++|.++.++..||.+-...
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~ 246 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNF 246 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHc
Confidence 4566778888888888888888888888743 667777888888888888888888888888877666666666555444
Q ss_pred CC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCChHHH
Q 002729 81 GD---IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP---LLVDAHSNLGNLMKAQGLVQEA 154 (887)
Q Consensus 81 g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A 154 (887)
.+ +..+...+.++...++.+|.+...++..++-.|++..+..+...++.... -..+.++.+|.++..+|++++|
T Consensus 247 ~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 247 NDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 32 44566666666666666665555555555555555555555555544331 1223355555555555555555
Q ss_pred HHHHHHHHhhCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 002729 155 YSCYLEALRIQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG----MPQEAIMCYQRA 229 (887)
Q Consensus 155 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 229 (887)
..+|.++++.++++ .-.++.+|+.|...|+++.|...|++.++..|++.++...+|.+|...+ ..++|..++.++
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 55555555555544 4444455555555555555555555555555555555555554444443 233344444444
Q ss_pred HhhCCC---------------------------------------hhHHhhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002729 230 VQTRPN---------------------------------------AIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (887)
Q Consensus 230 ~~~~p~---------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 265 (887)
++..|. .+.++++|..++..|++.+|...+.++++.
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 433332 455555555566666666666666655533
Q ss_pred CCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh
Q 002729 266 DPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (887)
Q Consensus 266 ~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 340 (887)
+++. ....++++.++...++++.|.+.|+.+++.+|...+.+..+|.+....++..+|...++.++..+..++.+
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~a 566 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNA 566 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHH
Confidence 1111 12355566666666666666666666666666666666666655555566666666666666666666666
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhcCCCcH
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRID--PLAADGLVNRGNTYKE------------IGRVTDAIQDYIRAITIRPTMA 406 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~al~~~p~~~ 406 (887)
+..+|..+....++..|.+-|+..++.. ..++.++..+|+++.+ .+.+++|++.|.++++.+|.|.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 6666666665555555555554444432 1344555566665543 2567888899999999999998
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (887)
.+-+.+|.++...|++.+|+.+|.++.+-..++.++|.|++++|..+|+|..|..+|+.+.+-
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999998888888889999999999999888888888877663
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-32 Score=295.01 Aligned_cols=463 Identities=21% Similarity=0.296 Sum_probs=344.4
Q ss_pred CHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 14 SYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGDIDLAIRYY 90 (887)
Q Consensus 14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~ 90 (887)
.+..+..++.++...++.+|.++..++.-++..|+|+.+..+...++..... -++.++.+|++|..+|+|++|..+|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445555555555555555556666666666666666666666666654422 2455777777777777777777777
Q ss_pred HHHHhcCCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhhC
Q 002729 91 LVAIELRPNF-ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG----LVQEAYSCYLEALRIQ 165 (887)
Q Consensus 91 ~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~ 165 (887)
.++++.++++ .-.++.+|+.|...|+++.|..+|+++++..|++.++...+|.+|...+ ..+.|..+..++++..
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 7777777766 5566777777777777777777777777777777777777777776664 4566677777777777
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCC
Q 002729 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RPN 235 (887)
Q Consensus 166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~ 235 (887)
|.+..+|..++.++....-+.. +..|.+++.. .+-.++.++++|..++..|++++|...|.+++.. +++
T Consensus 411 ~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 7777777777776665544443 6666666532 2334567788888888888888888888888765 111
Q ss_pred ------hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHh
Q 002729 236 ------AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309 (887)
Q Consensus 236 ------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (887)
....++++.++...++++.|.+.|..+++..|...++|..+|......++..+|...++.++..+..++.++..
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl 569 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL 569 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH
Confidence 22467888888888888888888888888888888888888877777788888888888888877776666666
Q ss_pred HHHHHHH------------------------------------------------cCChhHHHHHHHHHHhccCCCchhH
Q 002729 310 LGNIYME------------------------------------------------WNMLPAAASYYKATLAVTTGLSAPF 341 (887)
Q Consensus 310 l~~~~~~------------------------------------------------~g~~~~A~~~~~~~~~~~~~~~~~~ 341 (887)
+|.++.. .+.+++|++.|.+++..+|.|..+-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 5544432 2446788899999999999999999
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhC
Q 002729 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYKDS 419 (887)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 419 (887)
+.+|.++...|++.+|+.+|.++.+-..+..++|.++|.||..+|+|..|++.|+.+++.. .++.++...||.++...
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999988777788999999999999999999999999999864 45688999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCC------------hhhHhHHHHHHHHHHHHHhccC
Q 002729 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS------------WEDRDRMFSEVEGIIRRQVNMS 477 (887)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~ 477 (887)
|.+.+|.+...+++.+.|.++...+|++..+...+. ..++...++.+.++|..+...+
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999998877654331 2334445555566666665544
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=5e-30 Score=302.39 Aligned_cols=422 Identities=14% Similarity=0.050 Sum_probs=341.6
Q ss_pred HHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729 19 LEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP 98 (887)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 98 (887)
+..++. -...|.++....-...+....|+.++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 345555 4456667777777778888889999999888888887888888888889999999999999999999988888
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 002729 99 NFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGL 178 (887)
Q Consensus 99 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 178 (887)
+++.++..++.++...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++..|++..++..++.+
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888888888888899999999999999888888888 88888888889999999999999999999888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhh---CCChh-----
Q 002729 179 FMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYK-----ALGMP---QEAIMCYQRAVQT---RPNAI----- 237 (887)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~---~p~~~----- 237 (887)
+...+..++|++.++++.. .|+... ....+..+.. ..+++ ++|++.++++++. +|+..
T Consensus 160 l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 160 LRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 8888888888888887665 443211 1122222222 12234 6788888888865 33311
Q ss_pred HHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----hHHHHhHHH
Q 002729 238 AFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH----PQALTNLGN 312 (887)
Q Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~ 312 (887)
+.......+...|++++|+..|+++++..+.. ..+...++.++...|++++|+..|+++++..|.+ ......++.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 11221234467789999999999988775432 2233446889999999999999999988877765 345667777
Q ss_pred HHHHcCChhHHHHHHHHHHhccCCC---------------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002729 313 IYMEWNMLPAAASYYKATLAVTTGL---------------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377 (887)
Q Consensus 313 ~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (887)
++.+.|++++|+..++++....|.. ..++..++.++...|++++|++.+++++...|.+..++..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 8889999999999999998887632 2356788999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (887)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (887)
+|.++...|++++|++.++++++.+|++..+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998654
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.4e-29 Score=292.13 Aligned_cols=361 Identities=13% Similarity=0.039 Sum_probs=294.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002729 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (887)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (887)
.......+..+.+.|++++|...++.++...|+++.++..++.+....|++++|+..++++++.+|+++.++..+|.++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34455566677778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226 (887)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (887)
..|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...|+++..+..++ .+...|++++|+..+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLA 200 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888887777766554 367778888888888
Q ss_pred HHHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhcC
Q 002729 227 QRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDE----AIQCYNQCLSLQ 300 (887)
Q Consensus 227 ~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~ 300 (887)
+++++..|. ......++.++...|++++|+..+++++..+|++..++..+|.++...|++++ |+..++++++.+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 888776542 33445567778888888888888888888888888888889999998888885 788899999999
Q ss_pred CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002729 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380 (887)
Q Consensus 301 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 380 (887)
|++..++..+|.++...|++++|+..+++++..+|+++.++..++.++.+.|++++|+..|+++++.+|++...+..+|.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~ 360 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAA 360 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 99888899999999999999999999999999899888888889999999999999999999999888888877777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
++...|++++|+..|+++++..|++. ...+++|...|.++++..+...
T Consensus 361 al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCcc
Confidence 88999999999999999999888764 3455677777777777655544
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.1e-29 Score=293.14 Aligned_cols=457 Identities=14% Similarity=0.031 Sum_probs=375.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHH--------
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNM-------- 73 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------- 73 (887)
++.++..|+..|++++|+..++++++.+|.+...+..++.+ +++++|+..++++++.+|.+.+++..+
T Consensus 81 ~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~ 156 (987)
T PRK09782 81 TLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQN 156 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccc
Confidence 57889999999999999999999999999888887777655 888999999999999888765444332
Q ss_pred --------------------------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCChHHH
Q 002729 74 --------------------------------ANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEA 120 (887)
Q Consensus 74 --------------------------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A 120 (887)
..+|.++|++++|+..+.++.+..|.+......++.+|.. +++ +++
T Consensus 157 ~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a 235 (987)
T PRK09782 157 ALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRL 235 (987)
T ss_pred hhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHH
Confidence 5566778999999999999999999999999999999998 477 888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------------------------
Q 002729 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------------------------------------ 164 (887)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------------------------ 164 (887)
..+++..++ .++.++..++..+.+.|+.++|.+.+++.-..
T Consensus 236 ~al~~~~lk---~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~ 312 (987)
T PRK09782 236 LALQSQGIF---TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNR 312 (987)
T ss_pred HHHhchhcc---cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHH
Confidence 888665333 44555555555555555555555444221100
Q ss_pred -----------------------------------------------------------CCChHHHHHHHHHHHHHcCCH
Q 002729 165 -----------------------------------------------------------QPTFAIAWSNLAGLFMESGDL 185 (887)
Q Consensus 165 -----------------------------------------------------------~p~~~~~~~~la~~~~~~g~~ 185 (887)
.|.+...+..++....+.|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 313 QYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccH
Confidence 011111222222222223333
Q ss_pred HHHH-----------------------------------------------------------------HHHHHHHhhCC
Q 002729 186 NRAL-----------------------------------------------------------------QYYKEAVKLKP 200 (887)
Q Consensus 186 ~~A~-----------------------------------------------------------------~~~~~~l~~~~ 200 (887)
++|. ..+.+++...|
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 3332 22333344467
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 201 T--FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGN 278 (887)
Q Consensus 201 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 278 (887)
. ++.++..+|.++.. ++.++|+..+.+++...|+......++..+...|++++|+..++++....|... .+..+|.
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~-a~~~la~ 550 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE-DLLAAAN 550 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH-HHHHHHH
Confidence 7 89999999999998 899999999999999999866666778888899999999999999887766654 6788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHH
Q 002729 279 ALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAI 358 (887)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 358 (887)
++.+.|++++|..+++++++..|++...+..++......|++++|+..|+++++.+|+ ...+..+|.++.+.|++++|+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999999999998888877777777889999999999999999996 899999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 359 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
..|+++++++|+++.++.++|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|++++++.|+
T Consensus 630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhhcCChhhHhHHHHHHHHH
Q 002729 439 FPEATCNLLHTLQCVCSWEDRDRMFSEVEGI 469 (887)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 469 (887)
+..+............++..+.+.+.+...+
T Consensus 710 ~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 710 QALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998888888888888888777654
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=100.00 E-value=1.8e-29 Score=297.76 Aligned_cols=401 Identities=18% Similarity=0.115 Sum_probs=349.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002729 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (887)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (887)
...+...|++++|++.+.++...+|....++..+|.++...|++++|+..++++++.+|.++.++..++.++...|++++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 45678899999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165 (887)
Q Consensus 86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (887)
|+..++++++..|++.. +..++.++...|++++|+..++++++..|++..++..++.++...+..++|+..++++.. .
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 99999999999999999 999999999999999999999999999999999999999999999999999999987776 5
Q ss_pred CChH-----HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHHcCChHHHHHH
Q 002729 166 PTFA-----IAWSNLAGLFM-----ESGDL---NRALQYYKEAVKLKPTFPDA-------YLNLGNVYKALGMPQEAIMC 225 (887)
Q Consensus 166 p~~~-----~~~~~la~~~~-----~~g~~---~~A~~~~~~~l~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~ 225 (887)
|... .....+..+.. ..+++ ++|++.++++++..|.++.. .......+...|++++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4421 11222223322 22334 78999999999765444332 22212344677999999999
Q ss_pred HHHHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 226 YQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (887)
Q Consensus 226 ~~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (887)
|+++++..+. ......++.++...|++++|+..|++++..+|.. ......++.++.+.|++++|++.++++.+.
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 9999987643 2334446899999999999999999999887765 456777888899999999999999999988
Q ss_pred CCCC---------------hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002729 300 QPSH---------------PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364 (887)
Q Consensus 300 ~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 364 (887)
.|.. ..++..++.++...|++++|++.+++++...|.+..++..+|.++...|++++|++.++++
T Consensus 340 ~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 340 SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKA 419 (765)
T ss_pred CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7632 3467789999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729 365 LRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (887)
Q Consensus 365 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (887)
++++|++..+++.+|.++...|++++|...++++++..|+++.+
T Consensus 420 l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 420 EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999998843
No 18
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.5e-29 Score=285.64 Aligned_cols=524 Identities=12% Similarity=0.072 Sum_probs=338.1
Q ss_pred HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366 (887)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 366 (887)
.+++.-+.......|.+++++..||.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33333344444557888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (887)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (887)
.+|+++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876666665555
Q ss_pred HHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCcCCHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCC
Q 002729 447 LHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPI 526 (887)
Q Consensus 447 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (887)
+.-+... ..++++.-..+..-+. +...+ ....... .|.. +- .-.+.
T Consensus 229 ~~~~~~~-------------~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~---~~~~-------~~-~~~~~----- 274 (694)
T PRK15179 229 LVDLNAD-------------LAALRRLGVEGDGRDV-PVSIL----VLEKMLQ---EIGR-------RR-NAEYD----- 274 (694)
T ss_pred HHHHHHH-------------HHHHHHcCcccccCCC-ceeee----eHHHHHH---HHhh-------cC-ccccc-----
Confidence 4433221 1122222111111111 11111 1111000 0100 00 00011
Q ss_pred ccccCCCcccc-eeeeecCCCCCChhHHhhhHHhhcCCCCC--------------cEEEEEecCCCCC-hHHHHHHHhhc
Q 002729 527 PIRLDGGLRRL-RVGYVSSDFGNHPLSHLMGSVFGMHNKEN--------------VEVFCYALSPNDG-TEWRQRTQSEA 590 (887)
Q Consensus 527 p~~~~~~~~~l-riGyvs~d~~~h~~~~~~~~~~~~~~~~~--------------~e~~~~~~~~~~~-~~~~~~~~~~~ 590 (887)
..|.++. ||-+|-..+..-=.-..+..+..++++.+ .+|+|.+....++ +.+...++..-
T Consensus 275 ----~~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~G 350 (694)
T PRK15179 275 ----AGPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAG 350 (694)
T ss_pred ----CCCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCC
Confidence 1234566 78888766643222245556666666654 3677765432221 23333343321
Q ss_pred C--ceEECCC--------------------C------CHHHHHHHHHhCCCeEEEecCCcCCCCchhhh---hc--CCCc
Q 002729 591 E--HFVDVSA--------------------M------SSDMIAKLINEDKIQILINLNGYTKGARNEIF---AM--QPAP 637 (887)
Q Consensus 591 ~--~~~~~~~--------------------~------~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~---~~--r~ap 637 (887)
. .+..... + .-..+.+.|++.++||++ ++..+..++ +. ...|
T Consensus 351 v~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH-----~h~~~a~~lg~lAa~~~gvP 425 (694)
T PRK15179 351 IPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVH-----IWQDGSIFACALAALLAGVP 425 (694)
T ss_pred CeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEE-----EeCCcHHHHHHHHHHHcCCC
Confidence 1 1111110 0 025678899999999995 433333222 22 2357
Q ss_pred eEE-eccccCCCCCCC--------------cc--cEEEecCccCCC---CcCCCCccceeecCCccccCCCccccccCCC
Q 002729 638 IQV-SYMGFPGTTGAS--------------YI--DYLVTDEFVSPL---RYAHIYSEKLVHVPHCYFVNDYKQKNMDVLD 697 (887)
Q Consensus 638 vq~-~~~g~~~t~g~~--------------~~--d~~~~d~~~~p~---~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~ 697 (887)
+.+ ++-+.|...... .+ +.+++.....-. ..-....+++..+|++.-...+. ++
T Consensus 426 vIv~t~h~~~~~~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~------~~ 499 (694)
T PRK15179 426 RIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSV------QD 499 (694)
T ss_pred EEEEEeCCCccccchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcC------CC
Confidence 655 333332211100 01 122322110000 00112346777788764321111 00
Q ss_pred CCCCCCCC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEE
Q 002729 698 PNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (887)
Q Consensus 698 ~~~~~~r~--~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~ 773 (887)
+.....+. ..+++++.+++++++|+ .|..+.++++++++++..|+.+|+|+|.++. ++.+++.+++.|+ .++|.
T Consensus 500 ~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~-~~~L~~l~~~lgL-~~~V~ 577 (694)
T PRK15179 500 DACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPL-LESVREFAQRLGM-GERIL 577 (694)
T ss_pred chhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcc-hHHHHHHHHHcCC-CCcEE
Confidence 11111111 22356677888888876 5999999999999999999999999998875 7789999999999 59999
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccC--C--HHH
Q 002729 774 FTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN--S--MKE 848 (887)
Q Consensus 774 ~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~--~--~~~ 848 (887)
|.|..+ +...+|+.+|+++-|+.++| |++++|||+||+|||+-......+-+.. |.++ +++. | .++
T Consensus 578 flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~d------g~~G-lLv~~~d~~~~~ 648 (694)
T PRK15179 578 FTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQE------GVTG-LTLPADTVTAPD 648 (694)
T ss_pred EcCCcc--hHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCCChHHHccC------CCCE-EEeCCCCCChHH
Confidence 999864 56778999999999988888 9999999999999998655444443322 6666 5553 3 245
Q ss_pred HHHHHHHHhc----CHHHHHHHHHHH
Q 002729 849 YEERAVSLAL----DRQKLQALTNKL 870 (887)
Q Consensus 849 y~~~a~~l~~----d~~~~~~~~~~~ 870 (887)
+.+...++.. |++..++.|+..
T Consensus 649 La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 649 VAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred HHHHHHHHHhChhccHHHHHHHHHHH
Confidence 5555555444 555444444444
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1.8e-29 Score=291.03 Aligned_cols=362 Identities=13% Similarity=0.047 Sum_probs=326.7
Q ss_pred HHcCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002729 78 KEKGDIDLAIRYYLVAIEL---RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEA 154 (887)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 154 (887)
.++.+++.-.-++....+. ..++..-....+..+.+.|++++|+..++..+...|.+..++..++.+....|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHH
Confidence 3444554444444444332 2233445566778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (887)
Q Consensus 155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (887)
+..|+++++.+|+++.++..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+..++++....|
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P 175 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP 175 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHH
Q 002729 235 N-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312 (887)
Q Consensus 235 ~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (887)
+ ...+..+ ..+...|++++|+..+++++..+| ........++.++...|++++|+..++++++..|+++.++..+|.
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~ 254 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL 254 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7 4444444 458899999999999999998875 334455667889999999999999999999999999999999999
Q ss_pred HHHHcCChhH----HHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 002729 313 IYMEWNMLPA----AASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV 388 (887)
Q Consensus 313 ~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 388 (887)
++...|++++ |+..|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.++..+|.++.+.|++
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999996 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 389 TDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
++|+..|+++++.+|++...+..++.++...|++++|+..|+++++..|++.
T Consensus 335 ~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 335 TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999988888889999999999999999999999999875
No 20
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.98 E-value=1.4e-27 Score=282.26 Aligned_cols=455 Identities=13% Similarity=0.080 Sum_probs=321.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEP--RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (887)
...+..+-..+.+.|++++|+++|+++.+.+. .+...+..+...+.+.|..++|...|+.+.. | +...|..+...
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHH
Confidence 34444445556677888888888887776543 2344455566667777788888877776654 3 36677777777
Q ss_pred HHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHHcCCHHHH
Q 002729 111 YMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP-TFAIAWSNLAGLFMESGDLNRA 188 (887)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 188 (887)
+.+.|++++|.++++++.+.+. .+...+..+...|.+.|+.++|.++|+++.+... .+..+|..+...|.+.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 8888888888888887776653 3566777777888888888888888887776542 3567777888888888888888
Q ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----hCCChhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729 189 LQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----TRPNAIAFGNLASTYYERGQADMAILYYKQAI 263 (887)
Q Consensus 189 ~~~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l 263 (887)
.++|+++.+.. ..+..+|..+...+.+.|++++|.++|+++.. ..|+..+|..+...|.+.|++++|.++|+++.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888776543 12356777788888888888888888887765 35667777778888888888888888888777
Q ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCCchh
Q 002729 264 GCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAP 340 (887)
Q Consensus 264 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 340 (887)
+.+ +.+..+|..+...|.+.|++++|.++|+++.+.. ..+...+..+...|.+.|++++|.++++++.+.. +.+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 554 3345577778888888888888888888777652 2335677777778888888888888888877664 345667
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHh
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PTMAEAHANLASAYKD 418 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 418 (887)
|+.++..|.+.|++++|.++|+++.+.. ..+...|..+...|.+.|++++|.+.|+++.+.. ..+..++..+...+.+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 7788888888888888888888776542 2345677778888888888888888888776543 2335677777778888
Q ss_pred CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHh------------------HHHHHHHHHHHHHhccCCCC
Q 002729 419 SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRD------------------RMFSEVEGIIRRQVNMSVLP 480 (887)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~------------------~~~~~~~~~~~~~~~~~~~p 480 (887)
.|++++|.++++++.+.+..+....++.+..++ .+.++++. ....++..++++|+..|+.|
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc-~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC-LRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 888888888888887776554444443332221 11122221 22356788999999999999
Q ss_pred CCCCcccccCc
Q 002729 481 SVQPFHAIAYP 491 (887)
Q Consensus 481 ~~~~~~~l~~~ 491 (887)
+..+|..++..
T Consensus 846 d~~T~~~vL~c 856 (1060)
T PLN03218 846 TMEVLSQVLGC 856 (1060)
T ss_pred CHHHHHHHHHH
Confidence 99999988843
No 21
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.98 E-value=1.6e-28 Score=289.27 Aligned_cols=455 Identities=13% Similarity=0.071 Sum_probs=395.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-PRFAECYGNMANAWKE 79 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 79 (887)
..+...+.+.|++++|+++|+.+....+ .+...+..+..++.+.++++.|.+++..+.+.. ..+..++..+...|.+
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k 170 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK 170 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc
Confidence 3456678899999999999999976543 367888899999999999999999999998753 2367889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCY 158 (887)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (887)
.|++++|.+.|+++.+ | +..+|+.+...|.+.|++++|+++|+++.+.+. .+..++..+...+...|..+.+.+++
T Consensus 171 ~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 171 CGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred CCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999864 3 467899999999999999999999999988753 34567788888889999999999998
Q ss_pred HHHHhhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC
Q 002729 159 LEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--RPN 235 (887)
Q Consensus 159 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 235 (887)
..+.+.. ..+..+++.+...|.+.|++++|.++|+++. +.+..+|+.+...|.+.|+.++|+++|+++.+. .|+
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 8887753 4467788999999999999999999999874 356789999999999999999999999999764 677
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHH
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIY 314 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (887)
..++..+...+.+.|++++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|+.+...|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y 401 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHH
Confidence 8899999999999999999999999998654 44566899999999999999999999998764 3577899999999
Q ss_pred HHcCChhHHHHHHHHHHhcc-CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHH
Q 002729 315 MEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 315 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A 391 (887)
.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+++.+..+ .+...|..+...|.+.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999998764 44677899999999999999999999999987533 3456788899999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
.+.++++ ...| +..+|..+..++...|+++.|...+++++++.|++...+..++..|...|+|++|.+++++|.+
T Consensus 482 ~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 482 YAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9998764 2334 4678999999999999999999999999999999999999999999999999999888877664
No 22
>PLN03077 Protein ECB2; Provisional
Probab=99.98 E-value=7.6e-29 Score=299.31 Aligned_cols=483 Identities=16% Similarity=0.132 Sum_probs=339.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHc
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERN-PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEK 80 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 80 (887)
..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...+..+.|...+..+++..+. +......+...|.+.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 345678889999999999999987753 335556666666666777777777777777665543 344555666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-------------------------
Q 002729 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PL------------------------- 133 (887)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~------------------------- 133 (887)
|+.+.|.+.|+++.+ .+..+|..+...|.+.|++++|+..|+++...+ |+
T Consensus 135 g~~~~A~~~f~~m~~---~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 135 GELVHAWYVFGKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred CChHHHHHHHhcCCC---CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 777777666666543 234566666666666677777776666665422 22
Q ss_pred ---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-
Q 002729 134 ---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--PT- 201 (887)
Q Consensus 134 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~- 201 (887)
+...+..+...|.+.|++++|...|+++.. .+..+|+.+...|.+.|++++|+++|.++.+.. |+
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 223445566666777777777777766532 344566777777777777777777777765532 22
Q ss_pred ---------------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHH
Q 002729 202 ---------------------------------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248 (887)
Q Consensus 202 ---------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~ 248 (887)
+..+++.+...|.+.|++++|.++|+++. .|+..+|+.+...|.+
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~ 366 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEK 366 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHh
Confidence 34456666667777777777777776653 3455667777777777
Q ss_pred cCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHhHHHHHHHcCChhHHHH
Q 002729 249 RGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP-SHPQALTNLGNIYMEWNMLPAAAS 325 (887)
Q Consensus 249 ~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 325 (887)
.|++++|+++|+++.+ ..|+.. ++..+...+.+.|++++|.++++.+.+... .+..++..+...|.+.|++++|.+
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 335443 556666666777777777777777666532 345667777888888888888888
Q ss_pred HHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Q 002729 326 YYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-PT 404 (887)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 404 (887)
.|+++.+ .+..+|+.+...|.+.|+.++|+.+|+++....+.+...+..+..++.+.|+.+.+.+.+..+++.. ..
T Consensus 446 vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~ 522 (857)
T PLN03077 446 VFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522 (857)
T ss_pred HHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc
Confidence 8877643 3566788888888888888888888888876555566677777777888888888888888777764 23
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCC
Q 002729 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQP 484 (887)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~ 484 (887)
+..+...|..+|.+.|++++|.+.|+++ +.+..+|+.++..|...|+.++|.++|++ |...|+.||..+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~-------M~~~g~~Pd~~T 591 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR-------MVESGVNPDEVT 591 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH-------HHHcCCCCCccc
Confidence 4556778889999999999999999886 56788999999999999998777666655 445789999999
Q ss_pred cccccCcCCHHHHHHHHHHHHhhh
Q 002729 485 FHAIAYPIDPMLALEISRKYASHC 508 (887)
Q Consensus 485 ~~~l~~~~~~~~~~~~~~~~~~~~ 508 (887)
|..++.+|++.|.++++.++-+..
T Consensus 592 ~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 592 FISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHH
Confidence 999999999999999998876543
No 23
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=2.1e-26 Score=272.31 Aligned_cols=480 Identities=11% Similarity=0.054 Sum_probs=392.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (887)
+.+-..+.+.|++++|+++|+++.+.+. .+...+..+...+.+.|..++|..+++.+.. .+..+|..+...+.+.
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASS 450 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhC
Confidence 3445677789999999999999987763 2344455566778889999999999988765 4678899999999999
Q ss_pred CCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729 81 GDIDLAIRYYLVAIELRP-NFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQGLVQEAYSCY 158 (887)
Q Consensus 81 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (887)
|++++|.++|+++.+... .+...|..+...|.+.|+.++|.++|+++.+.+. .+..+|..+...|.+.|++++|.+.|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 999999999999998753 3578999999999999999999999999998763 37889999999999999999999999
Q ss_pred HHHHhhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-
Q 002729 159 LEALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR- 233 (887)
Q Consensus 159 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 233 (887)
+++.+.. ..+..+|+.+...|.+.|++++|.++++++.... ..+..++..+...|.+.|++++|.++|+++.+..
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 9997653 3457889999999999999999999999997631 2246789999999999999999999999999864
Q ss_pred -CChhHHhhHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHh
Q 002729 234 -PNAIAFGNLASTYYERGQADMAILYYKQAIGC--DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTN 309 (887)
Q Consensus 234 -p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 309 (887)
|+...|..+...|.+.|++++|.++|+++.+. .|+ ..+|..+...+.+.|++++|.++++++.+.. +.+..++..
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 55889999999999999999999999999854 565 4589999999999999999999999999874 456789999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcc-CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGR 387 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 387 (887)
+...|.+.|++++|.++|+++.... ..+...|+.++..|.+.|++++|+++|+++.+.. ..+...+..+...+.+.|+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999987653 4467889999999999999999999999998764 3456788888899999999
Q ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH----hC-------------------CCHHHHHHHHHHHHHcCCCCh-HH
Q 002729 388 VTDAIQDYIRAITIRP-TMAEAHANLASAYK----DS-------------------GHVEAAIKSYKQALLLRPDFP-EA 442 (887)
Q Consensus 388 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~----~~-------------------g~~~~A~~~~~~al~~~p~~~-~~ 442 (887)
+++|.+++.++.+... .+..++..+..++. +. +..++|..+|+++++.+-.+. ..
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999998642 23445555443322 11 234679999999999875533 44
Q ss_pred HHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCcCC
Q 002729 443 TCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPID 493 (887)
Q Consensus 443 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 493 (887)
+..++.++...+.+. .+..+++.+...+..|+..+|..++.+++
T Consensus 850 ~~~vL~cl~~~~~~~-------~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 850 LSQVLGCLQLPHDAT-------LRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred HHHHHHHhcccccHH-------HHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 555555544444433 33444555555667777778887777653
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.2e-28 Score=243.76 Aligned_cols=404 Identities=20% Similarity=0.235 Sum_probs=300.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (887)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (887)
..+-..|+-+++.|+|++||++|.++++..|+.+..|.+++.||...|++++.++...++++++|+...+++..+.++..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 34556677777788888888888888888887777777888888888888888888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChH----------------HHHHHHHHHHhhCC-------C--
Q 002729 114 KGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQ----------------EAYSCYLEALRIQP-------T-- 167 (887)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~----------------~A~~~~~~al~~~p-------~-- 167 (887)
+|++.+|+.-..-.--.+ -.+...-..+-..+.+++... .-+..|-....-+| .
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 888877776543321111 111111111111221111100 01111111111111 0
Q ss_pred -hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729 168 -FAIAWSNLAGLFME-SGDLNRALQYYKEAVKLK----PTF---------PDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (887)
Q Consensus 168 -~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~----~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (887)
+...-..+-.++.. ...|.+|...+.+..... ..+ ..++...|..+.-.|+...|.+.|+++++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 11111111111111 124666666665544321 111 346677788888889999999999999999
Q ss_pred CCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH
Q 002729 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (887)
Q Consensus 233 ~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (887)
+|. ...|..++.+|.+.++.++....|.++..++|+++++|+..|++++-++++++|+.-|+++++++|++.-.+..++
T Consensus 356 ~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 356 DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 988 4449999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHH-
Q 002729 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL------AADGLVNRGNTYKE- 384 (887)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~- 384 (887)
.+.+++++++++...|+.+....|+.++.++..|.++..++++++|++.|.+++++.|. ++..+...|.+..+
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch
Confidence 99999999999999999999999999999999999999999999999999999999988 55556555554433
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729 385 IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (887)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (887)
.+++..|++.+.++++++|.+..++..||.+..++|+.++|+++|+++..+.-
T Consensus 516 k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 516 KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999987743
No 25
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=2.8e-27 Score=285.75 Aligned_cols=452 Identities=13% Similarity=0.081 Sum_probs=313.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP-RFAECYGNMANAWKEKG 81 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g 81 (887)
..+...|.+.|++++|..+|+++.. .+...|..+...|.+.|++++|++.|+++.+... .+..++..+...+...|
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 4566778888888888888888753 2556788888888888888888888888876532 23455555555666666
Q ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729 82 DIDLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (887)
+.+.|.+.+..+.+.. ..+..++..+...|.+.|++++|.++|+++.. .+...|..+...|.+.|++++|++.|++
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~ 379 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYAL 379 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666666666655542 22355566666666666666666666665432 2344555666666666666666666665
Q ss_pred HHhhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH
Q 002729 161 ALRIQ-PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA 238 (887)
Q Consensus 161 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 238 (887)
+.+.. ..+...+..+...+.+.|++++|.+++..+.+... .+..++..+...|.+.|++++|.++|+++.+ ++..+
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs 457 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVIS 457 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeee
Confidence 54432 11223444444455555555555555555554432 2233455555555555555555555555432 33445
Q ss_pred HhhHHHHHHHcCChHHHHHHHHHHHhc-CCCc----------------------------------HHHHHHHHHHHHHc
Q 002729 239 FGNLASTYYERGQADMAILYYKQAIGC-DPRF----------------------------------LEAYNNLGNALKDV 283 (887)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~----------------------------------~~~~~~la~~~~~~ 283 (887)
|..+...|.+.|+.++|+..|+++... .|+. ...+..+...|.+.
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 555555555555555555555555422 2221 22345566788888
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCCchhHhhHHHHHHHcCCHHHHHHHHH
Q 002729 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNNLAVIYKQQGNYADAISCYN 362 (887)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (887)
|+.++|.+.|+++ +.+..+|+.+...|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|+.++|.++|+
T Consensus 538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~ 613 (857)
T PLN03077 538 GRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613 (857)
T ss_pred CCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence 8888888888875 5678899999999999999999999999998764 3466778888899999999999999999
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 363 EVLRIDP--LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 363 ~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
++.+..+ .+...|..+..++.+.|++++|.+.++++ ...|+ ..+|..|..++...|+.+.|....+++++++|++.
T Consensus 614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 9985432 34578899999999999999999999886 35555 77899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 441 EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
..+..+.+.|...|+|+++.++.+.|.+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999888777664
No 26
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=5e-27 Score=276.68 Aligned_cols=470 Identities=10% Similarity=0.036 Sum_probs=398.1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERN-PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
..+...+.+.++++.|.+++..+.+.. ..+...+..+...|.+.|++++|.++|+++.+ .+..+|..+...|.+.|
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCc
Confidence 345677888999999999999988754 23678899999999999999999999998854 46788999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002729 82 DIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRLNEAAQCCRQALALN-PLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (887)
++++|++.|+++.+.... +..++..+...+...|..+.+.+++..+.+.. ..+..++..+...|.+.|++++|.+.|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999876533 46788888999999999999999999888775 3466788999999999999999999998
Q ss_pred HHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCh
Q 002729 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PNA 236 (887)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~ 236 (887)
++. +.+..+|+.++..|.+.|+.++|+++|+++.+.. ..+..++..+...+.+.|++++|.+++..+.+.. |+.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 864 4578899999999999999999999999998754 2356789999999999999999999999999864 568
Q ss_pred hHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHhHHHHHH
Q 002729 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYM 315 (887)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 315 (887)
..+..+...|.+.|++++|.+.|+++.+ | +..+|+.+...|.+.|+.++|+++|+++.+.. ..+..++..+...+.
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999999864 3 45589999999999999999999999998763 345778888999999
Q ss_pred HcCChhHHHHHHHHHHhcc--CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002729 316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (887)
+.|..++|.++|+.+.+.. ..+...|..+..+|.+.|++++|.+.++++- .. .+...|..+...+...|+++.|..
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999999998643 3455679999999999999999999998752 22 356679999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHH--HhhhcCC--hhhHhHHHHHHH
Q 002729 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD--FPEATCNLLH--TLQCVCS--WEDRDRMFSEVE 467 (887)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~--~~~~~g~--~~~a~~~~~~~~ 467 (887)
.+++++++.|++...|..++.+|.+.|++++|.++++++.+.+-. +.-.|..+.. .-...|+ ..+..++++.+.
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 595 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLD 595 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999987532 1111111100 0011122 445677888999
Q ss_pred HHHHHHhccCCCCCCC
Q 002729 468 GIIRRQVNMSVLPSVQ 483 (887)
Q Consensus 468 ~~~~~~~~~~~~p~~~ 483 (887)
++..+|.+.|..|+..
T Consensus 596 ~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 596 ELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999999999854
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-27 Score=238.73 Aligned_cols=400 Identities=18% Similarity=0.216 Sum_probs=321.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (887)
..|+.++++|+|++||++|.++++..|+.+..|..++.||...|++++.++...++++++|+...+++.++.++..+|++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccH
Confidence 46889999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCChHHHHHHHH-----------------HHHHhCC-------CC-HHH
Q 002729 84 DLAIRYYLVAIELR-PNFADAWSNLASAYMRKGRLNEAAQCCR-----------------QALALNP-------LL-VDA 137 (887)
Q Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-----------------~~l~~~p-------~~-~~~ 137 (887)
++|+....-..-.. -++...-..+-+.+-+++. .++.+-+. .....+| .+ .+.
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~-~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQAM-KKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH-HHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 99987664432211 1112111111122221111 11111111 1111111 00 111
Q ss_pred H--HHHHHHHHH-cCChHHHHHHHHHHHhhC----CCh---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002729 138 H--SNLGNLMKA-QGLVQEAYSCYLEALRIQ----PTF---------AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201 (887)
Q Consensus 138 ~--~~la~~~~~-~g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (887)
. ..+-..+.. ...|.+|...+.+..... ..+ ..++...|..++-.|+.-.|...|+++++++|.
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~ 358 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA 358 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc
Confidence 1 111111111 124666666665544321 111 556777788888899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729 202 FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNAL 280 (887)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 280 (887)
+...|..++.+|....+.++....|.++..++|+ +.+|+..|++++-.+++++|+.-|++++.++|++.-.+..++.+.
T Consensus 359 ~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 359 FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCAL 438 (606)
T ss_pred cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC------CchhHhhHHHHHH-HcCC
Q 002729 281 KDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG------LSAPFNNLAVIYK-QQGN 353 (887)
Q Consensus 281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~-~~g~ 353 (887)
.++++++++...|+.+++.+|+.++++...+.++..++++++|.+.|++++.+.|. ++..+..-|.+.. -.++
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhh
Confidence 99999999999999999999999999999999999999999999999999999998 5555555444433 4589
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 354 YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 354 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
+.+|+++++++++++|....++..+|.+..++|+.++|+++|+++..+...
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887543
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=3e-25 Score=230.80 Aligned_cols=448 Identities=16% Similarity=0.092 Sum_probs=347.5
Q ss_pred CCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 13 GSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLV 92 (887)
Q Consensus 13 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 92 (887)
.+-+.|+.++.++.+..|.+.+.|..++. +.-|+.|...+.++-+.-|.+...|..-+..-..+|+.+.-.++..+
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAlar----LetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLALAR----LETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444555555555555555555544332 33455555555555555555555555555555555555544444444
Q ss_pred H---------------------------------------HhcC---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 002729 93 A---------------------------------------IELR---PNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (887)
Q Consensus 93 a---------------------------------------l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (887)
. +... .+....|..-++.+.+.+.++-|..+|..+++.
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 3 3321 223446667777777888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002729 131 NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLG 210 (887)
Q Consensus 131 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 210 (887)
.|.....|...+..-...|..++-..++++++...|.....|...+..+...|+...|..++.++++.+|++.++|+.-.
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002729 211 NVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI 290 (887)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 290 (887)
.+.....+++.|..+|.++....|....|+.-+.....+++.++|+++++++++..|+....|..+|+++.++++.+.|.
T Consensus 626 Kle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL 370 (887)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 370 (887)
+.|...++..|..+..|..++.+-.+.|+...|..+++++.-.+|++...|.....+-.+.|+.++|...+.++++..|.
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Q 002729 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (887)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (887)
+...|..-....-+-++-..+ ..|++....++.++...+.++....++++|+++|.++++.+|++.++|..+...+
T Consensus 786 sg~LWaEaI~le~~~~rkTks----~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKS----IDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred cchhHHHHHHhccCcccchHH----HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 877777666665555553333 3444555667889999999999999999999999999999999999999999999
Q ss_pred hhcCChhhHhHHHHHHHH
Q 002729 451 QCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 451 ~~~g~~~~a~~~~~~~~~ 468 (887)
..+|.-++..+++.+...
T Consensus 862 l~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 999988888777777654
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.97 E-value=1.3e-25 Score=258.38 Aligned_cols=439 Identities=14% Similarity=0.026 Sum_probs=280.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+..+...+++|++++|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........+|..+...|+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 55667777777777777777777777776654433666666777777777777777773333344444445667777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
+++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..+|++.+++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777764443 445555555666666777777777
Q ss_pred hhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH--HHHHHHHHc---------C---ChHHHHHHHHH
Q 002729 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYL--NLGNVYKAL---------G---MPQEAIMCYQR 228 (887)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~--~l~~~~~~~---------g---~~~~A~~~~~~ 228 (887)
+.+|++...+..+..++.+.|-...|.+...+--.........+. ..+.-..+. . -.+.|+..+++
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 777777777777777777777777776655543221111111111 111111111 1 12345555555
Q ss_pred HHh---hCCC-----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 229 AVQ---TRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCD-PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (887)
Q Consensus 229 ~~~---~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (887)
++. ..|. ..+......++...+++.++++.|+.+.... +-...+....|..|...++.++|+.+|++++..
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 555 2232 1223344555666677777777777766333 222335566677777777777777777777664
Q ss_pred CC------CChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC---------------CCchhHhhHHHHHHHcCCHHHHH
Q 002729 300 QP------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT---------------GLSAPFNNLAVIYKQQGNYADAI 358 (887)
Q Consensus 300 ~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------~~~~~~~~la~~~~~~g~~~~A~ 358 (887)
.+ .+......|...|...+++++|..++++..+..| +-......++.++...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 42 1222345666677777777777777777766433 11233445666677777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 359 SCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 359 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
+.+++++...|.+...+..+|.++...|.+.+|.+.++.+..++|++..+...++.++..+|++.+|....+++++..|+
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHH
Q 002729 439 FPEA 442 (887)
Q Consensus 439 ~~~~ 442 (887)
++.+
T Consensus 517 ~~~~ 520 (822)
T PRK14574 517 DIPS 520 (822)
T ss_pred chhH
Confidence 7644
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.96 E-value=3.8e-25 Score=254.62 Aligned_cols=442 Identities=16% Similarity=0.042 Sum_probs=368.9
Q ss_pred hhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729 27 ERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (887)
Q Consensus 27 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (887)
-..|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+.++++++...|........
T Consensus 28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla 107 (822)
T PRK14574 28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS 107 (822)
T ss_pred ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence 45688899999999999999999999999999999999996554488999999999999999999999444555556666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHH
Q 002729 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLN 186 (887)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 186 (887)
+|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|++.++++...+|.+... ..++.++...++..
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 68899999999999999999999999999999999999999999999999999999999986554 55666666678887
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHh--hHHHHHHHc---------C---C
Q 002729 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFG--NLASTYYER---------G---Q 251 (887)
Q Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~--~la~~~~~~---------g---~ 251 (887)
+|++.++++++.+|++.+++..+..++...|-...|.++..+-...... ...+. ..+.-..+. + -
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 8999999999999999999999999999999999999877764433222 11111 111111111 1 2
Q ss_pred hHHHHHHHHHHHh---cCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHhHHHHHHHcCChhHH
Q 002729 252 ADMAILYYKQAIG---CDPRF----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAA 323 (887)
Q Consensus 252 ~~~A~~~~~~~l~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 323 (887)
.+.|+.-+++++. ..|.. ..+......++...|++.++++.|+.+.... +-...+....|+.|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3556777777775 33432 2344556677888999999999999987655 33455788899999999999999
Q ss_pred HHHHHHHHhccCC------CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCC---------------CCHHHHHHHHHHH
Q 002729 324 ASYYKATLAVTTG------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP---------------LAADGLVNRGNTY 382 (887)
Q Consensus 324 ~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~~l~~~~ 382 (887)
+.+|++++...++ .......|...|...+++++|..+++++.+..| +..+....++.++
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 9999999886532 233346788899999999999999999988544 2345778889999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHH
Q 002729 383 KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRM 462 (887)
Q Consensus 383 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 462 (887)
...|++.+|.+.+++.+...|.|..++..+|.++...|++.+|++.++.+..++|++..+....+..+...++|.++...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 002729 463 FSEVEGI 469 (887)
Q Consensus 463 ~~~~~~~ 469 (887)
.+.+.+.
T Consensus 507 ~~~l~~~ 513 (822)
T PRK14574 507 TDDVISR 513 (822)
T ss_pred HHHHHhh
Confidence 8887763
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.1e-26 Score=227.93 Aligned_cols=452 Identities=21% Similarity=0.235 Sum_probs=375.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhh--CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYER--NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMA 74 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la 74 (887)
++.+|..|..+..+.+|+..|+-+++. .|+....-..+|.+++++.+|.+|+++|+.++..-|.- ...+.++|
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 578899999999999999999988763 36666677889999999999999999999999988762 56788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C---------CCHH-HHHHHH
Q 002729 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--P---------LLVD-AHSNLG 142 (887)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p---------~~~~-~~~~la 142 (887)
..+.+.|+|++|+..|+.+.+..|+.. +-+++..+++..|+-++-.+.|.+++.+. + +++. .+..-+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 999999999999999999999999854 55667788899999999999999998752 1 1211 111111
Q ss_pred ---HHHHH--cCChHHHHHHHHHHHhh-----CCCh--------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 143 ---NLMKA--QGLVQEAYSCYLEALRI-----QPTF--------------------AIAWSNLAGLFMESGDLNRALQYY 192 (887)
Q Consensus 143 ---~~~~~--~g~~~~A~~~~~~al~~-----~p~~--------------------~~~~~~la~~~~~~g~~~~A~~~~ 192 (887)
..+.. ..+-..|.+..-.+.++ .|+. ...-.+.+..+++.|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11111 12222333333332222 1221 112234566788999999999998
Q ss_pred HHHHhhCCCCH-HHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729 193 KEAVKLKPTFP-DAYLNLGNVYKAL--GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (887)
Q Consensus 193 ~~~l~~~~~~~-~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (887)
+-.-+.+.... .+-.++..+++.+ .++.+|..+...++..+.- ..+..+.|.+.+..|++++|.+.|++++..+..
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 87665544332 2445565555553 4688899999999887664 788889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHH
Q 002729 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348 (887)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 348 (887)
..++++++|..+..+|+.++|+++|-+.-.+--++.++++.++.+|....+..+|++++.++...-|+++.++..++.+|
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly 602 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 002729 349 KQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428 (887)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 428 (887)
-+.|+-.+|.+++-......|.+.+..-++|..|....-+++|+.+|+++.-+.|+.......++.|+.+.|++++|.+.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHcCCCChHHHHHHHHHhhhcC
Q 002729 429 YKQALLLRPDFPEATCNLLHTLQCVC 454 (887)
Q Consensus 429 ~~~al~~~p~~~~~~~~l~~~~~~~g 454 (887)
|+..-...|.+.+.+-.|.......|
T Consensus 683 yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhcccc
Confidence 99999999999999888887776655
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3e-25 Score=228.60 Aligned_cols=438 Identities=20% Similarity=0.228 Sum_probs=370.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (887)
+.+.+..+.+|.-|+-.-+++.... .++.-.+.++++++-.++|..|......- +....+..+.+..+.++.+..+++
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~ 99 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWD 99 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4456777889999999999998776 78888899999999999999998887765 566677889999999999999999
Q ss_pred HHHHHHHHH------HhcCCCc-------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 002729 85 LAIRYYLVA------IELRPNF-------------------ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139 (887)
Q Consensus 85 ~A~~~~~~a------l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (887)
+|..++... +..++.+ ....+..|.+|....+.++|...|.+++..++...++..
T Consensus 100 ~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~ 179 (611)
T KOG1173|consen 100 QALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFE 179 (611)
T ss_pred HHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHH
Confidence 999988732 1111111 223556778888899999999999999999887766655
Q ss_pred HHHHHHHHc-----------------CChHHHHHHHHHHHh----------hC--------CChHHHHHHHHHHHHHcCC
Q 002729 140 NLGNLMKAQ-----------------GLVQEAYSCYLEALR----------IQ--------PTFAIAWSNLAGLFMESGD 184 (887)
Q Consensus 140 ~la~~~~~~-----------------g~~~~A~~~~~~al~----------~~--------p~~~~~~~~la~~~~~~g~ 184 (887)
.+.....-. +...+-++.+-++.. .+ .++.......+..++..++
T Consensus 180 ~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~ 259 (611)
T KOG1173|consen 180 KLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCR 259 (611)
T ss_pred HHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcCh
Confidence 443322211 111111111111110 01 2346677788899999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAI 263 (887)
Q Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l 263 (887)
+.+..++.+..++.+|-+...+....-++.+.|+..+-..+-.++.+..|+ +..|+.+|..|...|++.+|..+|.++.
T Consensus 260 f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat 339 (611)
T KOG1173|consen 260 FKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT 339 (611)
T ss_pred HHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh
Confidence 999999999999999999887766666999999999988888899999998 9999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhh
Q 002729 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNN 343 (887)
Q Consensus 264 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (887)
.++|....+|...|..+...|..++|+..|..+-++.|....-...+|.-|...++++-|.++|.+++.+.|.++...+.
T Consensus 340 ~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~E 419 (611)
T KOG1173|consen 340 TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHE 419 (611)
T ss_pred hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhh
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729 344 LAVIYKQQGNYADAISCYNEVLRID----PL---AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (887)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (887)
+|.+.+..+.+.+|..+|+.++..- ++ -...+.++|.++.+++++++|+..|++++.+.|.++.++..+|.+|
T Consensus 420 lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 420 LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred hhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 9999999999999999999998432 22 2346899999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCChHHHH
Q 002729 417 KDSGHVEAAIKSYKQALLLRPDFPEATC 444 (887)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (887)
..+|+++.|++.|.+++.+.|++..+..
T Consensus 500 ~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 9999999999999999999999865543
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-24 Score=218.26 Aligned_cols=422 Identities=18% Similarity=0.200 Sum_probs=318.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHH-------------------HHHHHHHHHHhc-
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYD-------------------MCIARNEEALRL- 62 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-------------------~A~~~~~~al~~- 62 (887)
+.+|..++..+.++.|.-.++.... ....+..-.+.+-.|..+ ..+..+.+-++.
T Consensus 82 y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~ 156 (559)
T KOG1155|consen 82 YLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK 156 (559)
T ss_pred hhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence 4678899999999999888877643 222222222222222111 111111111111
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHH
Q 002729 63 ---EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP--LLVDA 137 (887)
Q Consensus 63 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~ 137 (887)
...++..++..|.++.+.|....|+..|..++...|-+-.+|..|+.+.... +.........| .+.-.
T Consensus 157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~ 229 (559)
T KOG1155|consen 157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMK 229 (559)
T ss_pred HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHH
Confidence 2345777888888888899999999999888888888888888887765322 22222222223 23333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002729 138 HSNLGNLMKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (887)
Q Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 216 (887)
-..+..++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-..+-.-...++++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 445667777777888888888888777 7888888888888888899999999999999888887666555556666555
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (887)
.+-.+---+-+...+++.- +++...+|..|.-.++.++|+.+|+++++++|....+|..+|.-|.++++...|++.|+.
T Consensus 310 ~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 5544444444455555544 777888888888888999999999999999999988999999999999999999999999
Q ss_pred HHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002729 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (887)
Q Consensus 296 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (887)
+++++|.+..+|+.+|++|.-++...-|+-+|+++....|+++..|..||.+|.+.++.++|+++|..++..+..+..++
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729 376 VNRGNTYKEIGRVTDAIQDYIRAIT-------IRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (887)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (887)
..+|.+|.++++.++|..+|++.++ ..|+-..+...|+.-+.+.+++++|..+..+++.-+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence 9999999999999999999998887 345556677778888889999999888877776653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.95 E-value=7.8e-24 Score=229.78 Aligned_cols=296 Identities=22% Similarity=0.276 Sum_probs=245.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+.|..++....++|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYS 156 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 156 (887)
++++|+-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|... ..-...+..+...++-+.|.+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998311 122334566667777788888
Q ss_pred HHHHHHhh--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------------------------
Q 002729 157 CYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK------------------------------------- 197 (887)
Q Consensus 157 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------------------------------- 197 (887)
.++.++.. +......++.++.++.+..+++.|.........
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88877763 222334455666666666666666655444332
Q ss_pred ------------------------hC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHH
Q 002729 198 ------------------------LK---PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYE 248 (887)
Q Consensus 198 ------------------------~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~ 248 (887)
.+ .+.++.+..++.++...|++.+|+.+|..+....+. ...|..+|.+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 00 123446778888888888888888888888876655 6688888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (887)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (887)
.|.+++|++.|++++...|++.++...|+.++.++|+.++|.+.++...
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 8888888888888888888888888888888888888888888887754
No 35
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-24 Score=221.46 Aligned_cols=430 Identities=22% Similarity=0.261 Sum_probs=304.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (887)
..++..+..|+|+.|+.+|.+++..+|.+...+.....+|..+|+|++|++.-.+.++++|..+..|..+|..+.-+|+|
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 002729 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG-LVQEAYSCYLEAL 162 (887)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al 162 (887)
++|+..|.+.++.+|++...+..++.++... +.. .+.| ..+..+..+...-.... ..+.+.....+.+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~~~-~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--YAA-DQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--HHh-hhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 9999999999999999999999999888211 111 1111 11111111111100000 0111222222222
Q ss_pred hhCCChHHHHHH-------HHHHHHHcCCH-HHHHHHH---------HHHHhhCC------------CCHHHHHHHHHHH
Q 002729 163 RIQPTFAIAWSN-------LAGLFMESGDL-NRALQYY---------KEAVKLKP------------TFPDAYLNLGNVY 213 (887)
Q Consensus 163 ~~~p~~~~~~~~-------la~~~~~~g~~-~~A~~~~---------~~~l~~~~------------~~~~~~~~l~~~~ 213 (887)
..+|.+...+.. ++.+.. .+.. ..+.... .+.....| ....-...+|+..
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 222222211111 110000 0000 0000000 00000000 0012345667777
Q ss_pred HHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCH
Q 002729 214 KALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL-------EAYNNLGNALKDVGRV 286 (887)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~ 286 (887)
.+..++..|++.|.+++++..+...+.+.+.+|+..|.+.+.+....++++...... .....+|..+.+.+++
T Consensus 235 ykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 777777777777777777774455666677777777777777777666664433322 2333456677777888
Q ss_pred HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR 366 (887)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 366 (887)
+.|+.+|++++...-. ..+..+....++++...+...-.+|.-..--..-|..+++.|+|.+|+..|.++++
T Consensus 315 ~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 8999999887765433 45556666777777777777777777766667778999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729 367 IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (887)
Q Consensus 367 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (887)
.+|+++..|.+++.||.++|.+..|++..+++++++|+...+|..-|.++..+.+|++|.+.|+++++.+|++.++...+
T Consensus 387 r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 387 RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGY 466 (539)
T ss_pred cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHhhhc
Q 002729 447 LHTLQCV 453 (887)
Q Consensus 447 ~~~~~~~ 453 (887)
..+....
T Consensus 467 ~rc~~a~ 473 (539)
T KOG0548|consen 467 RRCVEAQ 473 (539)
T ss_pred HHHHHHh
Confidence 7776653
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.8e-24 Score=217.89 Aligned_cols=412 Identities=19% Similarity=0.235 Sum_probs=350.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCCc----------
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEA------LRLEPRF---------- 66 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---------- 66 (887)
+.+|++++-.|+|++|..+...- +.+..+....+..+.++.+..++++|..++... +..++.+
T Consensus 53 ~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 53 YWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 56899999999999998887765 555668889999999999999999999998832 1111111
Q ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-----------------ChHHH
Q 002729 67 ---------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG-----------------RLNEA 120 (887)
Q Consensus 67 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------------~~~~A 120 (887)
....+..|.+|....+.++|...|.+++..++.+.++...+.....-.- ...+-
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 2356778899999999999999999999999888777665544433211 11111
Q ss_pred HHHHHHHH----------HhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc
Q 002729 121 AQCCRQAL----------ALN--------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES 182 (887)
Q Consensus 121 ~~~~~~~l----------~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 182 (887)
++.+-++. ..+ .++.+.....++.+...+++.+..+..+..++.+|-+...+-....++.+.
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL 291 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh
Confidence 11111111 001 136677888899999999999999999999999999988877777799999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHH
Q 002729 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQ 261 (887)
Q Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (887)
|+..+-..+-.++.+..|+.+-.|+..|..|...|++.+|.++|.++..++|. ..+|...|..+...+..++|+..|..
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC----C-
Q 002729 262 AIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT----G- 336 (887)
Q Consensus 262 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~- 336 (887)
+-+.-|....-...+|.-|...++++-|.+.|.+++.+.|.++-++..+|.+....+.+.+|..+|+.++..-+ +
T Consensus 372 Aarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 372 AARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 99999988888889999999999999999999999999999999999999999999999999999999984322 1
Q ss_pred --CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 337 --LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (887)
Q Consensus 337 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (887)
-...++++|.++.+++++++|+..+++++.+.|.++.++..+|.+|..+|+++.|++.|.+++-+.|++..+-..|+.
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 234588999999999999999999999999999999999999999999999999999999999999998766555554
Q ss_pred H
Q 002729 415 A 415 (887)
Q Consensus 415 ~ 415 (887)
+
T Consensus 532 a 532 (611)
T KOG1173|consen 532 A 532 (611)
T ss_pred H
Confidence 3
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.5e-23 Score=207.17 Aligned_cols=381 Identities=18% Similarity=0.198 Sum_probs=330.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHH
Q 002729 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP--NFADAWSNLA 108 (887)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la 108 (887)
.+...++..|.++.+.|..++|++.|..++...|-+..+|..++.+... ++........-| .+.-.-..+.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHH
Confidence 5677889999999999999999999999999999999999998877543 222333332233 2333445677
Q ss_pred HHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHH
Q 002729 109 SAYMRKGRLNEAAQCCRQALAL-NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (887)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (887)
.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-...-......+++-.++-.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 7888888999999999998888 688888888999999999999999999999999999877767777777777776666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (887)
Q Consensus 188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 266 (887)
---+.+....++.--+++..-+|+.|...++.++|+.+|+++++++|. ..+|..+|.-|..+++...|++.|+++++++
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 666667777788888889999999999999999999999999999999 8999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHH
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 346 (887)
|.+..+|+.+|++|.-++...=|+-+|+++.+..|+++..|..||.+|.+.++.++|+++|++++.....+..++..+|.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 002729 347 IYKQQGNYADAISCYNEVLR-------IDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (887)
+|.+.++.++|..+|++.++ ..|+...+...++.-+.+.+++++|..+..+++.-++.
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e--------------- 539 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE--------------- 539 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch---------------
Confidence 99999999999999999998 34555678888999999999999998888777766443
Q ss_pred CCHHHHHHHHHHHHHc
Q 002729 420 GHVEAAIKSYKQALLL 435 (887)
Q Consensus 420 g~~~~A~~~~~~al~~ 435 (887)
.++|...++++.+.
T Consensus 540 --~eeak~LlReir~~ 553 (559)
T KOG1155|consen 540 --CEEAKALLREIRKI 553 (559)
T ss_pred --HHHHHHHHHHHHHh
Confidence 45666666665543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.4e-25 Score=232.68 Aligned_cols=305 Identities=21% Similarity=0.279 Sum_probs=273.7
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002729 137 AHSNLGNLMK--AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (887)
Q Consensus 137 ~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 214 (887)
.+..+|..+. .+-+..+|+..|++.-...++...++..+|..|+++++|++|.++|+.+-+..|-..+..-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 3444444444 34456899999999777778888888999999999999999999999999988876665555566666
Q ss_pred HcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 215 ALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (887)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (887)
.+.+.-+--.+.+.+++.+|+ +++|..+|.+|.-+++++.|++.|++++.++|....+|..+|.-+....+++.|..+|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 666655555556667778888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002729 294 NQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (887)
Q Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (887)
++++..+|.+..+|+.+|.+|.++++++.|+-.|+++++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
..+..|.++..++++++|+..+++..++-|++..+++.+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.94 E-value=6.3e-22 Score=206.25 Aligned_cols=440 Identities=15% Similarity=0.087 Sum_probs=402.2
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------------
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE------------------- 63 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 63 (887)
+.+-.++.+..-|+.|...++++-+.-|.+..+|..-+..-..+|+.+...++..+.+..-
T Consensus 410 ~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~ 489 (913)
T KOG0495|consen 410 MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEAC 489 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHH
Confidence 3455677788889999999999999999999999999999999999988888877775321
Q ss_pred -----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHH
Q 002729 64 -----------------------PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEA 120 (887)
Q Consensus 64 -----------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 120 (887)
.+....|..-+..+.+.+.++-|+.+|..+++.+|.....|...+..-..-|..++-
T Consensus 490 e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 490 EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 012345667777888889999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002729 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (887)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (887)
..++++++..-|.....|...+..+...|+...|..++.++++.+|++...|.....+.....+++.|..+|.++....|
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg 649 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG 649 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279 (887)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 279 (887)
. ..+|+.-+.....+++.++|+++++++++.+|+ ...|..+|+++.+.++.+.|.+.|..-++..|.....|..++.+
T Consensus 650 T-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 T-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred c-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 5 678888899999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHH
Q 002729 280 LKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS 359 (887)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 359 (887)
-.+.|+.-.|..+++++.-.+|.+...|.....+-.+.|+.++|.....++++..|++...|..-+.+.-+-++-..++.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888877777777555555
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729 360 CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 360 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (887)
.++ ....++.++...|..+....++++|.+.|+++++.+|++.++|..+-..+...|.-++-.+++.++....|.+
T Consensus 809 ALk----kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 809 ALK----KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHH----hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 444 4567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 002729 440 PEATCNLL 447 (887)
Q Consensus 440 ~~~~~~l~ 447 (887)
...|....
T Consensus 885 G~~W~avS 892 (913)
T KOG0495|consen 885 GELWQAVS 892 (913)
T ss_pred CcHHHHHh
Confidence 88876643
No 40
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=2.7e-23 Score=229.51 Aligned_cols=300 Identities=19% Similarity=0.170 Sum_probs=240.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNL 107 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l 107 (887)
.....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++..+.. ..++..+
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 345566678888888888888888888888888888888888888888888888888888887753322 2467788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH-----HHHHHHHHHHHHc
Q 002729 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMES 182 (887)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~ 182 (887)
+.+|...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..++..+...
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888888888888888888888887766542 3456788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHH
Q 002729 183 GDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADMAILYYK 260 (887)
Q Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~ 260 (887)
|++++|+..++++++..|++...+..++.++...|++++|++.++++.+..|+ ...+..++.+|...|++++|...++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888888888888888888888888888888898888888887776 4567788888888899999999998
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHH--cCChhHHHHHHHHHHh
Q 002729 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYME--WNMLPAAASYYKATLA 332 (887)
Q Consensus 261 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 332 (887)
++++..|+.. .+..++.++.+.|++++|+..++++++..|++......+...... .|+.+++...++++++
T Consensus 274 ~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 274 RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888888765 447888888888999999999998888888877555444433322 4577888877777664
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.6e-24 Score=228.48 Aligned_cols=305 Identities=19% Similarity=0.244 Sum_probs=231.7
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 35 NLLLLGAIYYQ--LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 35 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
.+..+|..+.. +-+..+|+..|++.-...++...+...+|..|+++++|++|.++|+.+-+..|-..+..-.+..++.
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 33444444433 3345677777777666666667777777888888888888888887777777766555555556666
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (887)
...+--+--.+.+..+..+|+.++.|..+|+++.-+++.+.|+++|+++++++|....+|..+|.-+.....+++|...|
T Consensus 399 HLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~f 478 (638)
T KOG1126|consen 399 HLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSF 478 (638)
T ss_pred HHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHH
Confidence 66555554555566677777788888888888888888888888888888888877778888887777778888888888
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 002729 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE 271 (887)
Q Consensus 193 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 271 (887)
++++..+|.+-.+|+.+|.+|.++++++.|.-.|+++++++|. ......+|.++.+.|+.++|+.++++|+.++|.++-
T Consensus 479 r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 479 RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 8888888887778888888888888888888888888888777 666777778888888888888888888888888887
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCch
Q 002729 272 AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSA 339 (887)
Q Consensus 272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 339 (887)
..+..+.++...+++++|+..+++..+.-|++..++..+|.+|.+.|+.+.|+..|.-+..++|.-..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 88888888888888888888888888888888888888888888888888888888888888776544
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9.8e-24 Score=210.20 Aligned_cols=461 Identities=19% Similarity=0.209 Sum_probs=374.4
Q ss_pred HHhcCCHHHHHHHHHHHHhh------------CCC------chhHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCcHH
Q 002729 9 MYKSGSYKQALEHSNSVYER------------NPL------RTDNLLLLGAIYYQLHDYDMCIARNEEALR--LEPRFAE 68 (887)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~------------~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 68 (887)
.-..|++.+|++-.+.+-.+ -|. ...+++.++..|....-+.+|+..|+-.++ ..|+...
T Consensus 159 an~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~ 238 (840)
T KOG2003|consen 159 ANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGI 238 (840)
T ss_pred HhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCce
Confidence 44567888887665543211 111 245778899999999999999999998875 3577777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002729 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPN-----FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (887)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (887)
.-.++|.++++..+|.+|+++|+-++..-|. ....+.++|..+.+.|+|+.|+..|+...+..|+.. +-+++..
T Consensus 239 lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i 317 (840)
T KOG2003|consen 239 LKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLII 317 (840)
T ss_pred eeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhh
Confidence 7888999999999999999999999998776 245778888999999999999999999999998754 4556778
Q ss_pred HHHHcCChHHHHHHHHHHHhh--------------CCChHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhh-----CCC
Q 002729 144 LMKAQGLVQEAYSCYLEALRI--------------QPTFAIAWSNLAGL---FMESGDLNRALQYYKEAVKL-----KPT 201 (887)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~--------------~p~~~~~~~~la~~---~~~~g~~~~A~~~~~~~l~~-----~~~ 201 (887)
+++..|+-++-.+.|.+++.+ +|++......+-.- .+...+-..|.+....+.++ .|+
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 889999999999999999875 12221111111111 11122222333333333221 122
Q ss_pred C--------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHHc--CChHHHHH
Q 002729 202 F--------------------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYER--GQADMAIL 257 (887)
Q Consensus 202 ~--------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~~--g~~~~A~~ 257 (887)
. .+.-.+.+--+.+.|+++.|++++.-.-+.+.. ..+-.++...++.+ .++..|.+
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 1 123345567788999999999998766655443 55566776666664 47889999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCC
Q 002729 258 YYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL 337 (887)
Q Consensus 258 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 337 (887)
+...++.++..++.+..+.|++.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+--++
T Consensus 478 yad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn 557 (840)
T KOG2003|consen 478 YADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN 557 (840)
T ss_pred HHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (887)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (887)
...+..++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-......|.+.++.-.|+..|.
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHH
Q 002729 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGII 470 (887)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 470 (887)
...-.++|+.+|+++--+.|+.......++.++...|++..|...++....-+
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999999999999999988777777888889999999988887766533
No 43
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=7.8e-23 Score=225.78 Aligned_cols=299 Identities=17% Similarity=0.177 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHH
Q 002729 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL----VDAHSNLG 142 (887)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la 142 (887)
....+.+|..+...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++...+.. ...+..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34556668888888889999999999998888888888888998888999999999888887754322 24677888
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHcC
Q 002729 143 NLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD-----AYLNLGNVYKALG 217 (887)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~g 217 (887)
.++...|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++..|.+.. .+..++.++...|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 88888899999999999888888888888888888888899999999998888887766432 4567888888889
Q ss_pred ChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 218 MPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF-LEAYNNLGNALKDVGRVDEAIQCYNQ 295 (887)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (887)
++++|+..|+++++..|+ ...+..++.++...|++++|++.++++++.+|.+ ..++..++.++...|++++|...+++
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988888777 6778888888888999999999999888877765 35677888888888999999999998
Q ss_pred HHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHH--cCCHHHHHHHHHHHHh
Q 002729 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ--QGNYADAISCYNEVLR 366 (887)
Q Consensus 296 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~ 366 (887)
+++..|+... ...++.++.+.|++++|...++++++..|++......+...+.. .|+..+|+..++++++
T Consensus 275 ~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 275 ALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888887644 47888888889999999999988888888776544333333322 4578888888887765
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=3e-21 Score=209.86 Aligned_cols=436 Identities=18% Similarity=0.202 Sum_probs=338.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
...++..|+.++..|++++|..++.++++++|.++.+|+.+|.+|.++|+.+++...+-.+-.++|++.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH-----HHHHHHHHHHHHcCCHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-----IAWSNLAGLFMESGDLNR 187 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~ 187 (887)
++|++++|.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|... ......+..+...++-+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999999988321 223445777888888899
Q ss_pred HHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----------------------C--C-----Ch
Q 002729 188 ALQYYKEAVKLK--PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT----------------------R--P-----NA 236 (887)
Q Consensus 188 A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------~--p-----~~ 236 (887)
|++.++.++... ....+.+..++.++.+...++.|.......... . + +.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 999999998832 333456778899999999999998887766540 0 0 11
Q ss_pred hH-HhhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHhHHHH
Q 002729 237 IA-FGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-HPQALTNLGNI 313 (887)
Q Consensus 237 ~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 313 (887)
.. ...++.+..+..+..+++..+..--...| +..+.+..++.++...|++.+|+.++..+....+. +..+|+.+|.+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 12 33334444444455555544433322223 45678999999999999999999999998887553 46799999999
Q ss_pred HHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHH
Q 002729 314 YMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---------ADGLVNRGNTYKE 384 (887)
Q Consensus 314 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~ 384 (887)
|...|.+++|++.|++++...|++..+...|+.++.++|+.++|.+.++.+..-++.+ ......+..++.+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999877444322 2356777788888
Q ss_pred cCCHHHHHHHHHHHHhc-------CCC-----------------------------------------------------
Q 002729 385 IGRVTDAIQDYIRAITI-------RPT----------------------------------------------------- 404 (887)
Q Consensus 385 ~g~~~~A~~~~~~al~~-------~p~----------------------------------------------------- 404 (887)
.|+.++=+..-...+.. .|.
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 88877644433222210 000
Q ss_pred --c----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CChHHH----HHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 405 --M----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEAT----CNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 405 --~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
. .+....+..++.+.+++++|..+...+++..- .++... +-.+.+....++|.++...++.+..
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0 12345567788889999999999988887642 233322 2233344455778877777666655
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.92 E-value=6e-22 Score=191.28 Aligned_cols=318 Identities=17% Similarity=0.240 Sum_probs=200.7
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
++++|..++..|++..|+..|-.+++.+|++..+++..|..|+.+|+-.-|+..+.+++++.|+...+....|.++.++|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 45666666666777777777777666666666666677777777776666677777777666666666666666777777
Q ss_pred CHHHHHHHHHHHHhcCCCcH---HHHH------------HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFA---DAWS------------NLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (887)
.+++|...|+++++.+|++. ++.. .....+...|+...|++....+++..|-+...+...+.+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 77777777776666666421 1111 12222333455555555555555555555555555555555
Q ss_pred HcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729 147 AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCY 226 (887)
Q Consensus 147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (887)
..|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-. |.+..+..+.++.
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----YKklkKv~K~les- 275 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----YKKLKKVVKSLES- 275 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----HHHHHHHHHHHHH-
Confidence 55555555555555555555555555555555555555555555555555555554322211 1111111111111
Q ss_pred HHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 227 QRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE----AYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (887)
Q Consensus 227 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (887)
+......++|.++++..++.++.+|.... ....+..|+...+++.+|++.+.++++.+|+
T Consensus 276 ----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 276 ----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred ----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 22234567788888888888888877432 3445566777778888888888888888888
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh
Q 002729 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (887)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 340 (887)
+..++...+.+|.....|+.|+.-|+++.+.++++..+
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 88888888888888888888888888888888876554
No 46
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-21 Score=189.54 Aligned_cols=438 Identities=15% Similarity=0.107 Sum_probs=343.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--------------------CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYER--------------------NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE 63 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~--------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 63 (887)
.++...+...+|..|.+.|..++.. .|.+.+.....+.||...++-+.|+....+.....
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 3455566667777777777766542 12345667778888888888888888776543321
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH---HH
Q 002729 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH---SN 140 (887)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~ 140 (887)
..+.....++..+-.-++-.++.-.|...+...|--......+...- ..-.+.+-... ..+...|.....+ ..
T Consensus 128 -r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~--v~g~e~~S~~m-~~~~~~~~~dwls~wika 203 (564)
T KOG1174|consen 128 -RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELG--VNGNEINSLVM-HAATVPDHFDWLSKWIKA 203 (564)
T ss_pred -cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHh--hcchhhhhhhh-hheecCCCccHHHHHHHH
Confidence 23555566666666666655666666666655543222221111111 11111111111 1223333333222 23
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChH
Q 002729 141 LGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQ 220 (887)
Q Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 220 (887)
++.++.....+..+..++.......|+|...+..++.+++..|++.+|+..|++....+|......-..|.++...|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 44444444445555566666667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 221 EAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (887)
Q Consensus 221 ~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (887)
.-..+...++..... ..-|+--+...+..+++..|+.+-++++..+|.+.+++...|.++...|+.++|+-.|+.+..+
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L 363 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML 363 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence 999999888887744 7778888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHH-HHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002729 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA-VIYK-QQGNYADAISCYNEVLRIDPLAADGLVN 377 (887)
Q Consensus 300 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (887)
.|.+.+.|..+..+|...|++.+|...-+.+++..|.++.++..+| .++. .-.--++|.+++++.++++|....+-..
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 9999999999999999999999999999999999999999988886 4443 3345689999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729 378 RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (887)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (887)
++..+...|++++++..+++.+...|+ ...+..||.++...+.+++|.+.|..++.++|++..+.-.+
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 999999999999999999999999988 45899999999999999999999999999999987665443
No 47
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=9.7e-21 Score=202.46 Aligned_cols=434 Identities=16% Similarity=0.123 Sum_probs=324.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 8 QMYKSGSYKQALEHSNSVYER-----NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
.+.-..+.++++-..-.++.. -.+++..|-.+...+...|+++.+.+.|++++...-...+.|+.++.+|...|.
T Consensus 293 s~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 293 SLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGS 372 (799)
T ss_pred hccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhcc
Confidence 334445555665444333321 235677888888888999999999999999988877788899999999999999
Q ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcC-----
Q 002729 83 IDLAIRYYLVAIELR--PNFADAWSNLASAYM-RKGRLNEAAQCCRQALALN-----PLLVDAHSNLGNLMKAQG----- 149 (887)
Q Consensus 83 ~~~A~~~~~~al~~~--p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~la~~~~~~g----- 149 (887)
-..|+...++.+... |+++..+...+..+. +.+..++++.+..+++... --.+..+..+|.+|..+-
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 999999999998887 777766666655554 5688999999999998742 223456777777765432
Q ss_pred ------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCChHHH
Q 002729 150 ------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTFPDAYLNLGNVYKALGMPQEA 222 (887)
Q Consensus 150 ------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~A 222 (887)
...++++.++++++.+|+|+.+.+.++.-|..+++.+.|....+++++. ..+++..|..++.++...+++.+|
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 2467888899999999999999999999999999999999999999998 556678999999999999999999
Q ss_pred HHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH---------HHHHHHHHcCCHHHHHHH
Q 002729 223 IMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYN---------NLGNALKDVGRVDEAIQC 292 (887)
Q Consensus 223 ~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---------~la~~~~~~g~~~~A~~~ 292 (887)
+.+.+.+++..++ .........+-...++.++|+..+...+..-.....+.. ..+.......+..+|.+.
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 9999999887776 333444455555678888888887777643221111111 111111222233334333
Q ss_pred HHHHHhc---------------------CCCC-----hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHH
Q 002729 293 YNQCLSL---------------------QPSH-----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (887)
Q Consensus 293 ~~~al~~---------------------~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 346 (887)
.+++... .|+. ...|...+..+.+.++.++|..++.++....|..+..|+..|.
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 3333221 1111 2356677788888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 002729 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (887)
.+...|+.++|.+.|..++.++|+++.+...+|.++.+.|+..-|.+ .+..+++++|.+.++|+.+|.++.+.|+.++
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHH
Confidence 88888888888888888888888888888888888888888777777 8888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCCChH
Q 002729 425 AIKSYKQALLLRPDFPE 441 (887)
Q Consensus 425 A~~~~~~al~~~p~~~~ 441 (887)
|.++|..++++.+.+|.
T Consensus 773 Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 773 AAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHhhccCCCc
Confidence 88888888888877664
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=9.5e-21 Score=183.04 Aligned_cols=338 Identities=19% Similarity=0.236 Sum_probs=196.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (887)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (887)
.+.+-.+.+|..++..|++..|+..|..+++.+|++..+++..|.+|...|+-..|+..+.+++++.|+...+....|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 34445555566666666666666666666666666666666666666666666666666666666666555555555666
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHH
Q 002729 111 YMRKGRLNEAAQCCRQALALNPLLVD---AHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (887)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (887)
+.++|++++|..-|+.+++.+|++.. ++..++.+-. -..+......+...|+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e----------------------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQE----------------------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHH----------------------HHHHHHHHHHHhcCCchhh
Confidence 66666666666666666555553321 1111111100 0011122223344566666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (887)
Q Consensus 188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 266 (887)
|+.+...++++.|-+...+...+.+|...|+...|+.-+..+-++..+ .+.++.++..++..|+.+.++...++.++++
T Consensus 174 ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 174 AIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 666666666666666666666666666666666666666666555444 5566666666666666666666666666666
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh----Hh
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP----FN 342 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~ 342 (887)
|+.-..+-. |.+..+..+.++..+ ...+.++|.++++..++.++.+|..+.. +.
T Consensus 254 pdHK~Cf~~----YKklkKv~K~les~e------------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 254 PDHKLCFPF----YKKLKKVVKSLESAE------------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred cchhhHHHH----HHHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 654422211 111112222222211 2234456666677777777776663332 33
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (887)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (887)
.+..++..-+++.+|+....++++.+|++.+++...+.+|.....|++|+..|+++.+.++++..+...+
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 4566677777888888888888888888888888888888888888888888888888887776554433
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4e-21 Score=197.99 Aligned_cols=412 Identities=21% Similarity=0.242 Sum_probs=314.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (887)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (887)
....|+..+..|+|+.|+.+|.+++.++|.+...|.+...+|..+|+|++|++.-.+..+++|+-+..|..+|..+.-.|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc-CCHHHHHHHHHH
Q 002729 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKE 194 (887)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~ 194 (887)
+|++|+..|.+.++.+|++......++.++.. ++.. .+.| ..+..|..+...-... -..+.+.....+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~~-~~~~--------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYAA-DQLF--------TKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHHh-hhhc--------cCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999999999999999999999998888721 1111 1111 1122222222111111 011223333333
Q ss_pred HHhhCCCCHHHHH-------HHHHHHHHcCCh-HHHHHHH---------HHHHhhCC-------------ChhHHhhHHH
Q 002729 195 AVKLKPTFPDAYL-------NLGNVYKALGMP-QEAIMCY---------QRAVQTRP-------------NAIAFGNLAS 244 (887)
Q Consensus 195 ~l~~~~~~~~~~~-------~l~~~~~~~g~~-~~A~~~~---------~~~~~~~p-------------~~~~~~~la~ 244 (887)
.+..+|.+...+. .++.+.. .+.. ..+.... .+.....| .......+|.
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 3333443322211 1111110 0000 0000000 00000000 1234567899
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------hHHHHhHHHHHHHc
Q 002729 245 TYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-------PQALTNLGNIYMEW 317 (887)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~ 317 (887)
..++..+++.|++.|.+++.++ .+...+.+.+.++...|.+.+.+....++++..-.. ......+|..|.+.
T Consensus 233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999 888888999999999999999999998888765432 22344567788889
Q ss_pred CChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 318 NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIR 397 (887)
Q Consensus 318 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 397 (887)
++++.|+.+|++++..... ..+..+....+++++..+...-.+|.-..--...|..+++.|+|.+|+..|.+
T Consensus 312 ~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999998876543 56667778888999988888888998888888889999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 398 AITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 398 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
+++.+|+++..|.+.+.||.++|++..|++..+++++++|++..++..-+.++..+.+|..+.+.|.+..+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999888888888888887766
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-20 Score=199.58 Aligned_cols=403 Identities=16% Similarity=0.111 Sum_probs=338.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHH-HHHHc
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLE--PRFAECYGNMAN-AWKEK 80 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~ 80 (887)
.+...+...|+++.+.+.|++++...-...+.|+.++.++...|.-..|+.++++..... |++...+...+. |+.+.
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 355677888999999999999988777788999999999999999999999999999888 777666665555 45567
Q ss_pred CCHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729 81 GDIDLAIRYYLVAIELRP-----NFADAWSNLASAYMRK-----------GRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (887)
Q Consensus 81 g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (887)
+.+++++.+..+++.... -.+..+..+|.+|..+ ....++++.++++++.+|.|+.+.+.++.-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ 487 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 999999999999998421 1355777777777543 235688999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002729 145 MKAQGLVQEAYSCYLEALRI-QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (887)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (887)
|..+++.+.|.....++++. ..+++.+|..++.++...+++.+|+.+.+.++...++|.........+-...++.++|+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 99999999999999999999 56778999999999999999999999999999999998887777778888899999999
Q ss_pred HHHHHHHhhCCC----------hhHHhhHHHHHHHcCChHHHHHHHHHHHhc---------------------CCCc---
Q 002729 224 MCYQRAVQTRPN----------AIAFGNLASTYYERGQADMAILYYKQAIGC---------------------DPRF--- 269 (887)
Q Consensus 224 ~~~~~~~~~~p~----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------------------~p~~--- 269 (887)
..+...+..... .......+......++..+|.+..+++... .|..
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 988887765331 111111122222223444444444443311 1111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHH
Q 002729 270 --LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVI 347 (887)
Q Consensus 270 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 347 (887)
...|...+..+...++.++|..++.++..++|..+..++..|.++...|+.++|.+.|..++..+|+++.+...+|.+
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 245778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002729 348 YKQQGNYADAIS--CYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMA 406 (887)
Q Consensus 348 ~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 406 (887)
+.+.|+..-|.. ++..+++++|.++++|+.+|.++.+.|+.++|.++|+.++++.+.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999998888888 99999999999999999999999999999999999999999987765
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.7e-18 Score=169.80 Aligned_cols=445 Identities=16% Similarity=0.140 Sum_probs=371.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+.-|+--..++++..|..+|++++..+..+...|...+.+-++.+....|..++++++..-|.-...|+....+-..+|+
T Consensus 77 ikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 77 IKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGN 156 (677)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence 34455566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
...|.++|++-++..|+ ..+|......-.+.++.+.|..+|++.+-.+|+ ...|...+..-.+.|+..-|...|++++
T Consensus 157 i~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 157 IAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999999988 779999999999999999999999999888864 6788999999999999999999999999
Q ss_pred hhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCChH---HHH-----HHHHHH
Q 002729 163 RIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF--PDAYLNLGNVYKALGMPQ---EAI-----MCYQRA 229 (887)
Q Consensus 163 ~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~g~~~---~A~-----~~~~~~ 229 (887)
+...++ ...+...+..-..+..++.|..+|+-+++.-|.+ ...+..+...-.+-|+.. +++ --|++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 875443 3345566777777889999999999999988887 445555544444556543 332 246677
Q ss_pred HhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHH---------HHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 002729 230 VQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLE---------AYNNLGN-ALKDVGRVDEAIQCYNQCLS 298 (887)
Q Consensus 230 ~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------~~~~la~-~~~~~g~~~~A~~~~~~al~ 298 (887)
++.+|. -.+|+.........|+.+.-.+.|++++...|...+ .|.+.+. .-....+.+.+.++|+.+++
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777886 788998888888999999999999999976665322 2222221 12456889999999999999
Q ss_pred cCCCC----hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 002729 299 LQPSH----PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADG 374 (887)
Q Consensus 299 ~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 374 (887)
+-|.. ..+|...+....++.+...|.+.+-.++...|.+. .+.....+-.+.++++...++|++.++..|.+..+
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 98764 56888888889999999999999999999998754 45667777888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhh
Q 002729 375 LVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (887)
Q Consensus 375 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (887)
|...|..-..+|+.+.|...|+-|++...-+ ...|......-...|.+++|..+|++.++..+... +|...+..-.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 9999999999999999999999999875332 34677788888889999999999999999988776 7777666544
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.89 E-value=6.2e-19 Score=185.12 Aligned_cols=466 Identities=16% Similarity=0.157 Sum_probs=344.6
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
+|..+...+..++|.+.++..+.+++..|.+.+.+...|..+..+|+-++|......++..++.+..+|..+|.++....
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (887)
+|++|+++|+.|+..+|+|...|..++....++++++-....-.+.++..|..-..|...+..+.-.|++..|....+..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HhhC---CCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729 162 LRIQ---PTF-----AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (887)
Q Consensus 162 l~~~---p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (887)
.+.. |.. ............+.|..++|.+.+.+--..--+........+.++.+++++++|...|...+..+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 7654 322 23444455667778888888877766544333444466677899999999999999999999999
Q ss_pred CChhH-HhhHHHHHHHcCChHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChHHHHhH
Q 002729 234 PNAIA-FGNLASTYYERGQADMAI-LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNL 310 (887)
Q Consensus 234 p~~~~-~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l 310 (887)
|+... +..+-.++..-.+--+++ ..|...-+..|... .-..++.....-.++.+.. +++...++.. -+.+...+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg--~p~vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKG--VPSVFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-cchhccHHHhCcchhHHHHHHHHHHHhhcC--CCchhhhh
Confidence 99444 444444443333333444 45555444444332 2223333222222333222 2333333321 12222233
Q ss_pred HHHHHHcCCh---hHHHHHHHHHHhcc------------CCCchh--HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 002729 311 GNIYMEWNML---PAAASYYKATLAVT------------TGLSAP--FNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD 373 (887)
Q Consensus 311 ~~~~~~~g~~---~~A~~~~~~~~~~~------------~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 373 (887)
-..|..-.+. ++-...|...+.-. |..+.+ ++.++.-+...|+++.|..+++.++...|..++
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliE 406 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIE 406 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHH
Confidence 3333221111 11111111111111 222222 456788889999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH-------
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL------- 446 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------- 446 (887)
.+...|+++...|++++|...+..+.+++-.|..+...-|....+.++.++|.+...+.-..+- .+..+|
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~---~~~~~L~~mqcmW 483 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF---GAVNNLAEMQCMW 483 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc---chhhhHHHhhhHH
Confidence 9999999999999999999999999999987777777889999999999999999887665443 222222
Q ss_pred -----HHHhhhcCChhhHhHHHHHHHHHHHHH
Q 002729 447 -----LHTLQCVCSWEDRDRMFSEVEGIIRRQ 473 (887)
Q Consensus 447 -----~~~~~~~g~~~~a~~~~~~~~~~~~~~ 473 (887)
+.+|..+++|..|.+.|..+...+.+-
T Consensus 484 f~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~ 515 (700)
T KOG1156|consen 484 FQLEDGEAYLRQNKLGLALKKFHEIEKHYKTW 515 (700)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 345666777878877777777766553
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.8e-19 Score=174.47 Aligned_cols=407 Identities=15% Similarity=0.083 Sum_probs=319.8
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
...+.++-..++-+.|+..+.++.... ..+..-..++..+-.-++-.++.-.+...+...|--......+...-. +-
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v--~g 177 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV--NG 177 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh--cc
Confidence 346778888889899988877765432 245555566666655555556666666666655532222222211111 11
Q ss_pred HHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAW---SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYL 159 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (887)
++.+- .-...+...|..+..| ..++.++.-...+.-+..++-.-...-|++...+..+|.++...|++++|+..|+
T Consensus 178 ~e~~S-~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 178 NEINS-LVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred hhhhh-hhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 11111 1112233344444332 2344444444445555556666667779999999999999999999999999999
Q ss_pred HHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhH
Q 002729 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIA 238 (887)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 238 (887)
++.-.+|.+....-..+.++...|+++.-..+....+........-|+--+...+..++++.|+.+-+++++.+|. ..+
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a 336 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA 336 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchH
Confidence 9999999999999999999999999999999888888887777778888888889999999999999999999888 889
Q ss_pred HhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH-HHHH-H
Q 002729 239 FGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG-NIYM-E 316 (887)
Q Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~-~ 316 (887)
+...|..+...++.++|+-.|+.+..+.|...+.|..+..+|...|++.||...-+.+++..|.+..++..+| .++. .
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD 416 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998886 4433 3
Q ss_pred cCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYI 396 (887)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 396 (887)
..--++|.+++++.+.+.|....+-..++.++...|++++++.++++.+...|+ ...+..+|.++...+.+.+|++.|.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445688999999999999999999999999999999999999999999998765 4578899999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHH
Q 002729 397 RAITIRPTMAEAHANLAS 414 (887)
Q Consensus 397 ~al~~~p~~~~~~~~la~ 414 (887)
.++.++|++..+...+-.
T Consensus 496 ~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 496 KALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHhcCccchHHHHHHHH
Confidence 999999998766555433
No 54
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.87 E-value=6.5e-19 Score=192.26 Aligned_cols=464 Identities=15% Similarity=0.185 Sum_probs=369.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYL 91 (887)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 91 (887)
.++...|...|-++++.++.-..++..+|.+|...-+...|.+.|+++.++++.+..+.-..+..|.+..+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 34578899999999999999999999999999998899999999999999999999999999999999999999999876
Q ss_pred HHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH
Q 002729 92 VAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA 169 (887)
Q Consensus 92 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 169 (887)
.+-+..|. ....|..+|-.|.+.++..+|+..|+.+++.+|++...|..+|.+|...|++..|++.|.++..++|.+.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 66666654 2345667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---------
Q 002729 170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--------- 233 (887)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------- 233 (887)
...+..+.+.+..|+|.+|+..+...+...... .+.+...+..+...|-..+|...+++.++..
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999887754332 3455555666666677777777777766531
Q ss_pred CChhHHhhHHHHHH---HcC--------------------Ch---H---HHHHHHHHHHhcCCCcHHHHHHHHHHHHH--
Q 002729 234 PNAIAFGNLASTYY---ERG--------------------QA---D---MAILYYKQAIGCDPRFLEAYNNLGNALKD-- 282 (887)
Q Consensus 234 p~~~~~~~la~~~~---~~g--------------------~~---~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~-- 282 (887)
.+...|..++..+. ... .. + -+.+++-..++.-. .+..|+++|..|..
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHH
Confidence 11223333322221 111 00 1 12222222222111 13468888877766
Q ss_pred ------cCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHH
Q 002729 283 ------VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYAD 356 (887)
Q Consensus 283 ------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 356 (887)
..+...|+.++++++++..++...|+.||.+ ...|++.-|..+|-+.....|.+...|.++|.++.++.+++.
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 2344589999999999999999999999988 777999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHhCCCHHHHHHH---
Q 002729 357 AISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT-----MAEAHANLASAYKDSGHVEAAIKS--- 428 (887)
Q Consensus 357 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~--- 428 (887)
|...|.++..++|.+...|...+.+....|+.-++...|....+.... ....|..-......+|++++-+..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 999999999999999999999999999999999999999885444321 233444555556667776665544
Q ss_pred -------HHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccC
Q 002729 429 -------YKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMS 477 (887)
Q Consensus 429 -------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 477 (887)
.++.+...|++..++...+.+....+.+.++.....++..+++.....+
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~s 1004 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDES 1004 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555667899999988888888888889999999989888888766553
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.6e-21 Score=203.45 Aligned_cols=259 Identities=22% Similarity=0.306 Sum_probs=80.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002729 140 NLGNLMKAQGLVQEAYSCYLEALRI--QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG 217 (887)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 217 (887)
.++.++...|++++|++++.+.... .|++...|..++.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 4466666666666666666444332 355666666666666666666666666666666666666666666655 5666
Q ss_pred ChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 218 MPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (887)
Q Consensus 218 ~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (887)
++++|.+++++..+..++...+...+.++...++++++...++++.... +.+...|..+|.++.+.|+.++|+..+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666555555555555556666666666666666655332 45555666666666666666666666666
Q ss_pred HHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 002729 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (887)
Q Consensus 296 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (887)
+++.+|+++.+...++.++...|+.+++...++......|.++..+..+|.++...|++++|+.+|+++++.+|+++..+
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 66666666666666666666666666655555555555555555555556666666666666666666665556555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 002729 376 VNRGNTYKEIGRVTDAIQDYIRAI 399 (887)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al 399 (887)
..+|.++...|+.++|..++.+++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHT----------------
T ss_pred cccccccccccccccccccccccc
Confidence 555555555555555555555544
No 56
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1e-16 Score=161.80 Aligned_cols=446 Identities=13% Similarity=0.125 Sum_probs=368.7
Q ss_pred HHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (887)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (887)
+.|+..+..+--+...|...|.--..++++..|..+|++++..+..+...|...+.+-++......|..++++++..-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 34555566666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 002729 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLF 179 (887)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 179 (887)
-...|+....+-..+|+..-|.++|++.++..|+ ..+|......-.+.++.+.|..+|++.+-.+|+ ...|...+..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHH
Confidence 8999999999999999999999999999999885 578888889999999999999999999988865 57789999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHhhHHHHHHHcCCh-
Q 002729 180 MESGDLNRALQYYKEAVKLKPTFPD---AYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQA- 252 (887)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~la~~~~~~g~~- 252 (887)
.+.|+..-|...|+++++.-.++.. .+...+..-..++.++.|..+|+-++..-|. ...+......--+-|+.
T Consensus 218 ~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999987655432 5666777778889999999999999998887 33333444333444553
Q ss_pred --HHHH-----HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---------HHHhHHH-HHH
Q 002729 253 --DMAI-----LYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---------ALTNLGN-IYM 315 (887)
Q Consensus 253 --~~A~-----~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~-~~~ 315 (887)
++++ --|++.+..+|.+.++|+.+..+....|+.+.-.+.|++++..-|...+ .|.+.+. .-.
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 2467777889999999999999999999999999999999998776432 2222221 123
Q ss_pred HcCChhHHHHHHHHHHhccCCC----chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002729 316 EWNMLPAAASYYKATLAVTTGL----SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (887)
...+.+.+.+.|+.++++-|.. +..|...+....++.+...|.+.+-.++-..|.+ ..+-....+-.++++++..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHH
Confidence 5789999999999999998874 5568888888899999999999999999998875 3455556677889999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-Ch-HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD-FP-EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
.+.|++-++..|.+..+|...|.+-..+|+.+.|..+|+-|++...- -| ..|-..+..-...|.++.+..+++++.+
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999986432 22 2344455555566667777776666655
No 57
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.86 E-value=1.6e-18 Score=189.34 Aligned_cols=458 Identities=15% Similarity=0.129 Sum_probs=358.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHc
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEK 80 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~ 80 (887)
-.+|..|...-+...|.+.|.++.+.++.+.+++-..+..|.+..+++.|..+...+-+..|.. ...|..+|-.|.+.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCc
Confidence 3577777777789999999999999999999999999999999999999999977776666643 45677799999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLE 160 (887)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (887)
++..+|+..|+.++..+|++..+|..+|.+|...|++..|++.|.++..++|.+....+..+.+.+..|+|++|+..+..
T Consensus 576 ~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------C-CCCHHHHHHHHHHH------------
Q 002729 161 ALRIQPTF-------AIAWSNLAGLFMESGDLNRALQYYKEAVKL-------K-PTFPDAYLNLGNVY------------ 213 (887)
Q Consensus 161 al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~-~~~~~~~~~l~~~~------------ 213 (887)
.+...... .+.+...+..+...|-..+|..++++.++. . .++...|..++...
T Consensus 656 ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn 735 (1238)
T KOG1127|consen 656 IIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN 735 (1238)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH
Confidence 88764433 444555555555566666676666666542 1 12222222222211
Q ss_pred -------HH----cCCh------HHHHHHHHHHHhhCCChhHHhhHHHHHHH--------cCChHHHHHHHHHHHhcCCC
Q 002729 214 -------KA----LGMP------QEAIMCYQRAVQTRPNAIAFGNLASTYYE--------RGQADMAILYYKQAIGCDPR 268 (887)
Q Consensus 214 -------~~----~g~~------~~A~~~~~~~~~~~p~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~ 268 (887)
.. .+.. --+.+++-..++.......|+++|..|+. ..+-..|+.++.++++...+
T Consensus 736 ~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an 815 (1238)
T KOG1127|consen 736 MHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN 815 (1238)
T ss_pred HHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc
Confidence 11 1111 12333333334433346778888888776 23345799999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHH
Q 002729 269 FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIY 348 (887)
Q Consensus 269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 348 (887)
+...|+.||.+ ...|++.-|.-+|-+.+..+|.+...|.++|.++.+..+++.|...|.++..++|.+...|...+.+.
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~ 894 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIP 894 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhH
Confidence 99999999988 66699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHH----------HHHHhcCCCcHHHHHHHH
Q 002729 349 KQQGNYADAISCYNEVLRIDPL-----AADGLVNRGNTYKEIGRVTDAIQDY----------IRAITIRPTMAEAHANLA 413 (887)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~----------~~al~~~p~~~~~~~~la 413 (887)
...|+.-++...|....+++.. ....|..--......|++++-+... ++.+...|+...++...|
T Consensus 895 eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~g 974 (1238)
T KOG1127|consen 895 EAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANG 974 (1238)
T ss_pred HHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHH
Confidence 9999999999999885444321 2234444455556666666655543 444556799999999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc------CCCChHHHHHHHHHhhhcCChhhHhH
Q 002729 414 SAYKDSGHVEAAIKSYKQALLL------RPDFPEATCNLLHTLQCVCSWEDRDR 461 (887)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~a~~ 461 (887)
.....++.+.+|.+.+.+++.+ ...++.+.-++...+...|.++.|..
T Consensus 975 stlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 975 STLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 9999999999999988887653 12233355556666777777665543
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=9.7e-19 Score=168.20 Aligned_cols=269 Identities=23% Similarity=0.263 Sum_probs=207.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHH
Q 002729 178 LFMESGDLNRALQYYKEAVKLK---PT-------FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYY 247 (887)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~---~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~ 247 (887)
+++..++...|-......++.. |. +......+|.+|.++|.+.+|.+.++..++..|..+++..++.+|.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ 267 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQ 267 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHH
Confidence 4555566666665554444321 11 1123356788888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHH
Q 002729 248 ERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYY 327 (887)
Q Consensus 248 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 327 (887)
+..+...|+..+.+.++..|.+.......+.++..++++++|.++|+.+++.+|.+.++.-.++.-|.-.++.+-|+.+|
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH
Confidence 88888888888888888888888777788888888888888888888888888888888777777888888888888888
Q ss_pred HHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--P-LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 328 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
++.++..-.+++.+.++|.++.-.++++-++..|++++... | ...++|+++|.+....|++.-|..+|+-++..+++
T Consensus 348 RRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 348 RRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 88888888888888888888888888888888888887653 2 33568888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHH
Q 002729 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNL 446 (887)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 446 (887)
+.+++++|+.+-.+.|++++|..++..+-.+.|+-.+..+|+
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 888888888888888888888888888888887766666554
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.85 E-value=5e-21 Score=199.75 Aligned_cols=260 Identities=22% Similarity=0.279 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHc
Q 002729 173 SNLAGLFMESGDLNRALQYYKEAVKL--KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYER 249 (887)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~ 249 (887)
..++.++...|++++|++.+.+.... .|+++..|..++.+....+++++|+..|++++...+. ...+..++.. ...
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 36688888888888888888665443 3777788888888888888888888888888887666 5556666666 678
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002729 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ--PSHPQALTNLGNIYMEWNMLPAAASYY 327 (887)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 327 (887)
+++++|..++++..+..+ ++..+...+.++...++++++...++++.... +.++..+..+|.++.+.|+.++|+..|
T Consensus 91 ~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887776554 34566667777888888888888888866544 566778888888888888888888888
Q ss_pred HHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002729 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAE 407 (887)
Q Consensus 328 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 407 (887)
+++++.+|++..+...++.++...|+.+++.+.++...+..|.++..+..+|.++..+|++++|+.+|+++++.+|+++.
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 88888888888888888888888888888888888777777777778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729 408 AHANLASAYKDSGHVEAAIKSYKQALL 434 (887)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (887)
++..+|.++...|+.++|.++++++++
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 888888888888888888888887765
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=5.1e-18 Score=186.24 Aligned_cols=300 Identities=13% Similarity=0.028 Sum_probs=185.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHcC
Q 002729 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFA-IAWSNLAGLFMESG 183 (887)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 183 (887)
...|......|+++.|.+.+.++.+..|+....+...+.++..+|++++|.+++.++.+..|++. .+....+.++...|
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN 167 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC
Confidence 44455555666777777776666666666666666666666666777777777766666666654 34444566666666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHH
Q 002729 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQA 262 (887)
Q Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (887)
++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+.... ...+..+
T Consensus 168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l-------------------- 227 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL-------------------- 227 (409)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------------------
Confidence 7777776666666666666666666666666666666666666666654221 1111000
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc
Q 002729 263 IGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338 (887)
Q Consensus 263 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 338 (887)
.......+...+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++.
T Consensus 228 ----------~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 228 ----------EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred ----------HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 00001111111222223333334443333 3444555555555555555555555555555555444
Q ss_pred hhH--hhHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCcHHHHHHH
Q 002729 339 APF--NNLAVIYKQQGNYADAISCYNEVLRIDPLAA--DGLVNRGNTYKEIGRVTDAIQDYI--RAITIRPTMAEAHANL 412 (887)
Q Consensus 339 ~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l 412 (887)
... ..........++.+++++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|++.. +..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence 321 1112222334677888889999999999999 888899999999999999999999 57777887654 5589
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 002729 413 ASAYKDSGHVEAAIKSYKQALLL 435 (887)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~ 435 (887)
|.++.+.|+.++|.++|++++..
T Consensus 377 a~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=6.3e-18 Score=185.51 Aligned_cols=299 Identities=11% Similarity=-0.032 Sum_probs=234.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHH
Q 002729 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA-DAWSNLASAYM 112 (887)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 112 (887)
......|......|+++.|.+.+.++.+..|.....+...|.++.+.|+++.|.+++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34456677788888888888888888888887777788888888888888888888888888877764 45556688888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHH----HHHHHHHHcCCHHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS----NLAGLFMESGDLNRA 188 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~A 188 (887)
..|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....+..... .....+...+..+++
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888876443333221 122222344444555
Q ss_pred HHHHHHHHhhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhH---HhhHHHHHHHcCChHHHHHHHHH
Q 002729 189 LQYYKEAVKLKP----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIA---FGNLASTYYERGQADMAILYYKQ 261 (887)
Q Consensus 189 ~~~~~~~l~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~la~~~~~~g~~~~A~~~~~~ 261 (887)
.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|+... ...........++.+.+++.+++
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 667777777666 57888999999999999999999999999998887432 12223333445788899999999
Q ss_pred HHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002729 262 AIGCDPRFL--EAYNNLGNALKDVGRVDEAIQCYN--QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (887)
Q Consensus 262 ~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 333 (887)
+++..|+++ .....+|.++.+.|++++|.++|+ .+++..|++.. +..++.++.+.|+.++|.+++++++..
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999 888899999999999999999999 57777777655 558999999999999999999998654
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.84 E-value=6.5e-17 Score=170.09 Aligned_cols=428 Identities=18% Similarity=0.203 Sum_probs=321.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
...++..+.-.+..++|.+.++..+.+++..|+..+++...|..+...|+-++|......++..++.+...|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34667777778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYY 192 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 192 (887)
...+|++|+++|+.++..+|+|...+..++.+..++++++.....-.+.++..|..-..|...+..+...|++..|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhC---CCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729 193 KEAVKLK---PTFP-----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAI 263 (887)
Q Consensus 193 ~~~l~~~---~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l 263 (887)
+...+.. |+.. ........+..+.|..++|++.+...-...-+ .......+..+.+.+++++|...+...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 8887755 2221 24445566777888888888877665443333 4445567889999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHH-HHHHHHHhccCCCchhH
Q 002729 264 GCDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAA-SYYKATLAVTTGLSAPF 341 (887)
Q Consensus 264 ~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~ 341 (887)
..+|++...+..+-.++.+-.+--+++ ..|...-+..|.. .....++.....-.++.... .++...++. ..+...
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~vdkyL~~~l~K--g~p~vf 323 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIVDKYLRPLLSK--GVPSVF 323 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHHHHHHHHHhhc--CCCchh
Confidence 999999988888877776444444555 5555544444332 22223332222223333322 223333332 122333
Q ss_pred hhHHHHHHHcCCH---HHHHHHHHHHHhc------------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 342 NNLAVIYKQQGNY---ADAISCYNEVLRI------------DPLAA--DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 342 ~~la~~~~~~g~~---~~A~~~~~~al~~------------~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
..+-..|..-.+. ++=+..|...+.- .|... ..++.++.-+...|+++.|..+...|+...|+
T Consensus 324 ~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT 403 (700)
T KOG1156|consen 324 KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT 403 (700)
T ss_pred hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch
Confidence 3333333222111 1111111221211 12222 35667788899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 002729 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463 (887)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 463 (887)
-++.+..-|+++...|++++|..+++.+.+++-.|...-..-+.-.......++|.++.
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHH
Confidence 99999999999999999999999999999998776554444555455555555555443
No 63
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.2e-16 Score=166.42 Aligned_cols=442 Identities=15% Similarity=0.074 Sum_probs=310.3
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+.-...+..+|+|++|.+...+++...|++..++...-.++.+.++|++|+...++-......+ ...+..+.|.++++.
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc
Confidence 3445677889999999999999999999999999999999999999999996655433222222 223789999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
.++|+..++ ..++.+..+....+++++++|+|++|..+|+...+.+.++.+............ -..+. ..+..
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~--~~q~v 167 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ--LLQSV 167 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH--HHHhc
Confidence 999999998 445666678889999999999999999999999988877665443332221111 01111 22333
Q ss_pred hhCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCC-------HHHHHHHHHHHHHcCChHHHHHHH
Q 002729 163 RIQPT-FAIAWSNLAGLFMESGDLNRALQYYKEAVKLK--------PTF-------PDAYLNLGNVYKALGMPQEAIMCY 226 (887)
Q Consensus 163 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------~~~-------~~~~~~l~~~~~~~g~~~~A~~~~ 226 (887)
...|. +.+.+++.+.++...|+|.+|++.+++++++. .+. ..+...++.++..+|+.++|.+.|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33343 67788999999999999999999999995431 111 126678899999999999999999
Q ss_pred HHHHhhCCC-----hhHHhhHHHHHHHcCChH-HHHHHHHHHHhcCC----------CcHHHHHHHHHHHHHcCCHHHHH
Q 002729 227 QRAVQTRPN-----AIAFGNLASTYYERGQAD-MAILYYKQAIGCDP----------RFLEAYNNLGNALKDVGRVDEAI 290 (887)
Q Consensus 227 ~~~~~~~p~-----~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~ 290 (887)
...+..++. ..+-+++..+-....-++ .++..++......+ .-...+.+.+.+.+..+.-+++.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999998765 223333332222111111 11112211111111 11224566666666667777776
Q ss_pred HHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCC-chhHhhHHHHHHHcCCHHHHHHHHHHHH----
Q 002729 291 QCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVL---- 365 (887)
Q Consensus 291 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al---- 365 (887)
+.....-...|....-.........+...+.+|.+++....+.+|.+ ..+...++.+...+|+++.|++.+...+
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 66655544455443333333334444447889999999999999887 6678889999999999999999999433
Q ss_pred ----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729 366 ----RIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (887)
Q Consensus 366 ----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (887)
+.. ..+.+-..+-..+.+.++.+.|...+.+++.- .+.....+..++..-.+.|+.++|...+++.++
T Consensus 408 ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 408 SSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 222 23444445555667777766666666666543 333344566778888888999999999999999
Q ss_pred cCCCChHHHHHHHHHhhhc
Q 002729 435 LRPDFPEATCNLLHTLQCV 453 (887)
Q Consensus 435 ~~p~~~~~~~~l~~~~~~~ 453 (887)
.+|++.++...++.+|...
T Consensus 487 ~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred hCCchHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.83 E-value=1.9e-18 Score=196.79 Aligned_cols=270 Identities=16% Similarity=0.072 Sum_probs=219.2
Q ss_pred hCCCchh--HHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 002729 28 RNPLRTD--NLLLLGAIYYQ---LHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVA 93 (887)
Q Consensus 28 ~~p~~~~--~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a 93 (887)
..+.+.+ .++..|..+.. .+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 4444544 34455554433 35689999999999999999999999999887643 3488999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHH
Q 002729 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWS 173 (887)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 173 (887)
++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++.+|.++..+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCC
Q 002729 174 NLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ 251 (887)
Q Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~ 251 (887)
.++.+++..|++++|+..++++++.. |+++..+..++.++...|++++|...+.++....|. ......++..|...|+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 77777888999999999999998775 778888999999999999999999999998887777 6667777888887774
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (887)
Q Consensus 252 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (887)
+|...++++++..............++.-.|+-+.+... +++.+.+
T Consensus 491 --~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 --RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777777776643222221223367777777887777776 7766543
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=4.2e-19 Score=170.71 Aligned_cols=270 Identities=21% Similarity=0.235 Sum_probs=220.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC---CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 41 AIYYQLHDYDMCIARNEEALRLE---PR-------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (887)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (887)
.+++..++...|-......++.+ |. +..-...+|+||.++|.+.+|.+.++.+++..|. ++.+..++.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 34566777777776666655442 11 2334467899999999999999999999987765 8889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHH
Q 002729 111 YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (887)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (887)
|.+..+...|+..+.+.++..|.++..+...+.++..++++++|.++|+.+++.+|.+.++...++..|+-.++.+-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--PN--AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (887)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 266 (887)
+|++++++.-.+++.+.++|.+....++++-++..|++++... |+ ...|++++.+....|++..|...|+-++..+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999988753 33 6677777777777777777777777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (887)
+++.+++++++.+-.+.|+.++|..+++.+....|+-.+..++++
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 777777777777777777777777777777777666555554443
No 66
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=3.3e-17 Score=178.72 Aligned_cols=298 Identities=12% Similarity=0.034 Sum_probs=228.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHH
Q 002729 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA-WSNLASAYM 112 (887)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~ 112 (887)
...+..|......|++++|.+.+.+..+..+.....+...+....+.|+++.|..++.++.+.+|++... ....+..+.
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3345667777778888888877777655433323333334555588888888888888888888876433 334478888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH--------HHHHHHHHHHHcCC
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI--------AWSNLAGLFMESGD 184 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~~g~ 184 (887)
..|++++|...++++.+.+|+++.++..++.+|...|++++|.+.+.++.+..+.+.. ++..+........+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888776544322 22233333334445
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHh
Q 002729 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG 264 (887)
Q Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 264 (887)
.+...+.++...+..|+++.+...++..+...|+.++|.+.+++.++..++.......+. ...++.+++++.+++.++
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~--l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPR--LKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhh--ccCCChHHHHHHHHHHHh
Confidence 556666666666667788999999999999999999999999999987666543333333 345899999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc
Q 002729 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334 (887)
Q Consensus 265 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 334 (887)
..|+++..+..+|.++...+++++|.+.|+++++..|++.. +..++.++.+.|+.++|..+|++.+...
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888644 5679999999999999999999998754
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.82 E-value=3.8e-17 Score=178.20 Aligned_cols=294 Identities=13% Similarity=0.035 Sum_probs=237.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHcCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 002729 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL-ASAYMRKGRLNEAAQCCRQALALNPLLVDA-HSNLGNLMKA 147 (887)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~la~~~~~ 147 (887)
.+..|......|++++|.+...+..+..+. +..++.+ +....+.|+++.|..+++++.+.+|++... ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 456677777799999999888887665443 4444444 666699999999999999999998887543 3455899999
Q ss_pred cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------HHHHHHHHHHHcCCh
Q 002729 148 QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD--------AYLNLGNVYKALGMP 219 (887)
Q Consensus 148 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~g~~ 219 (887)
.|++++|...++++.+.+|+++.++..++.+|...|++++|++.+.++.+....++. ++..+........+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999999999999999999999999887766544 222223333333444
Q ss_pred HHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 220 QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (887)
Q Consensus 220 ~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (887)
+...+.++......|+ ......++..+...|+.++|.+.+++.++..+ +.......+. ...++.+++++..++.++
T Consensus 246 ~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 246 EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPR--LKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhh--ccCCChHHHHHHHHHHHh
Confidence 4555555555444444 78889999999999999999999999998544 4444333333 345899999999999999
Q ss_pred cCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368 (887)
Q Consensus 299 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 368 (887)
..|+++..+..+|.++...+++++|.+.|+++++..|++.. +..++.++.++|+.++|..+|++++.+.
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999988644 6689999999999999999999998753
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.8e-16 Score=154.24 Aligned_cols=443 Identities=14% Similarity=0.040 Sum_probs=306.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002729 7 HQMYKSGSYKQALEHSNSVYERNPLR-TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDL 85 (887)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 85 (887)
..+..+.+|..|+.+++-....+... ...-.++|.|++.+|+|++|+..|+-+...+..+.+.+..++-+++-.|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 35677889999999998776554332 35667899999999999999999999988777788999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729 86 AIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ 165 (887)
Q Consensus 86 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (887)
|...-.++ |+++-....+-.+..+.++-++-... ...++ +..+-...++.+.+..-.|++|++.|.+.+..+
T Consensus 110 A~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~f-h~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTF-HSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHH-HHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98876664 55565555666666677775554433 33332 223456677888888888999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHH
Q 002729 166 PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLAST 245 (887)
Q Consensus 166 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~ 245 (887)
|+.......++.+|++..-++-+.+.+.-.+...|+++-+.+..+....+.=+-..|......+....... +..+.-
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---YPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---chhHHH
Confidence 99888888899999999999999999999999999998888888777776644444444444433321110 111111
Q ss_pred HHH-----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCCh
Q 002729 246 YYE-----RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNML 320 (887)
Q Consensus 246 ~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 320 (887)
+++ -.+-+.|++.+-..++.-| ++..+++..|.++++.++|..+.+. ++|..|.-+...|.+....|+-
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhh
Confidence 111 1234556666655555444 4677888888888888888776654 5788887777777777777765
Q ss_pred hHHHHHHHHHHhc-------c--CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002729 321 PAAASYYKATLAV-------T--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 321 ~~A~~~~~~~~~~-------~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (887)
....+.++.+.+. . -+...-...++..++-..++++.+.+++..-...-++....++++.++...|++.+|
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEA 412 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHH
Confidence 5444444333221 1 122233556777777788888888888887777777778888888888888888888
Q ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHH-HHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 392 IQDYIRAITIR-PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA-TCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 392 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
.+.|-+.-..+ .+.......|+.||.+.|+.+-|...|-+. -.|...-. +..++..+..++.+--+.+.|++++.
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 88887766554 233445567888888888888888777543 12222222 22334445555555555666666554
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=7.8e-18 Score=191.77 Aligned_cols=251 Identities=16% Similarity=0.069 Sum_probs=219.1
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 002729 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRK---------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLV 151 (887)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 151 (887)
+++++|+..|+++++.+|+++.++..++.++... +++++|...++++++++|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4679999999999999999999999999887643 3489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (887)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (887)
++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|.++..+..++.++...|++++|+..+++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777777778889999999999999988
Q ss_pred hC-CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHh
Q 002729 232 TR-PN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309 (887)
Q Consensus 232 ~~-p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (887)
.. |+ ...+..++.++...|++++|...++++....|........++..+...|+ +|...++++++.....+.-...
T Consensus 435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH
Confidence 75 54 67788999999999999999999999988889888888899998888884 7888777776654333333333
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcc
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVT 334 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~ 334 (887)
...+|.-.|+.+.+..+ +++.+..
T Consensus 513 ~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77778888888888877 7766554
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=3.8e-16 Score=150.84 Aligned_cols=260 Identities=18% Similarity=0.194 Sum_probs=121.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCC
Q 002729 8 QMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR-----FAECYGNMANAWKEKGD 82 (887)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~ 82 (887)
.++-..+.++|+++|-.+++.+|...++.+.+|..+.+.|+.+.|+.+.+..++. |+ ...+...+|.-|...|-
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhh
Confidence 3444444455555555555555555555555555555555555555544443332 22 12344445555555555
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-----DAHSNLGNLMKAQGLVQEAYSC 157 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~ 157 (887)
++.|...|....+...--..+...+..+|....++++|++..++..+..+... ..+..++..+....+.+.|...
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 55555555444443323333444455555555555555555554444443321 2334444444444444445555
Q ss_pred HHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729 158 YLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNA 236 (887)
Q Consensus 158 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 236 (887)
+.++++.+|++..+-..+|.++...|++++|++.++.+++.+|+. +++...+..+|...|+.++.+..+.++.+..+..
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 555555455444444444555555555555555555444444443 2244444444444455555444444444444444
Q ss_pred hHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729 237 IAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (887)
Q Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (887)
.....++..-....-.+.|..++.+-+...|.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 44444444444444444444444444444444
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=7.1e-18 Score=175.69 Aligned_cols=230 Identities=20% Similarity=0.308 Sum_probs=151.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
|..|..++++|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||.+|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 34566777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSN-------LASAYMRKGRLNEAAQCCRQALALNP--LLVDAHSNLGNLMKAQGLVQE 153 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~ 153 (887)
-.+|+.++.+-+...|.....-.. ..........+..-.+.|-.+....| .+++++..||.+|.-.|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 777777777776665542111000 00000111122334445555555555 566677777777777777777
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729 154 AYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (887)
Q Consensus 154 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (887)
|+.+|+.++...|++...|+.||..+....+.++|+..|.+++++.|....+++++|..+..+|.|++|.+.|-.++.+
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777666654
No 72
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.79 E-value=5.1e-17 Score=174.90 Aligned_cols=297 Identities=12% Similarity=0.063 Sum_probs=181.2
Q ss_pred HhhhHHhhcCCCCCcEEEEEecCCCCC--hH--HHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEEEecCCcCCCCch
Q 002729 553 HLMGSVFGMHNKENVEVFCYALSPNDG--TE--WRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQILINLNGYTKGARN 628 (887)
Q Consensus 553 ~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~ 628 (887)
.||.+.+.. ++++|+.|+.-+.+. +. ..-.++....+-.....-+-..++..|++.+|||+ ||+..+.
T Consensus 220 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIV-----Ht~~~~a 291 (578)
T PRK15490 220 DFFLKEVLE---EQVEVLEIAKITGNLFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYL-----SVWQDGA 291 (578)
T ss_pred chhHHHHHh---cCCceEEeeccchhhhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEE-----EEcCccc
Confidence 344444433 678888887443211 11 00012333332222323346789999999999999 7765554
Q ss_pred hhh---hcC--CCceEEecc-ccCCCCCCCcc----------c--EEEecCccCCCCc--C------CCCccceeecCCc
Q 002729 629 EIF---AMQ--PAPIQVSYM-GFPGTTGASYI----------D--YLVTDEFVSPLRY--A------HIYSEKLVHVPHC 682 (887)
Q Consensus 629 ~~~---~~r--~apvq~~~~-g~~~t~g~~~~----------d--~~~~d~~~~p~~~--~------~~~~e~~~~lp~~ 682 (887)
.++ +.+ ..||.++.. |++...+-..+ + +..+| ++..... + ....+++..+||+
T Consensus 292 ~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNG 370 (578)
T PRK15490 292 CLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNG 370 (578)
T ss_pred HHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCC
Confidence 333 223 357766653 23322221100 1 11222 2222221 1 1235678888886
Q ss_pred cccCCCccccccCCCCCCCCCCC--CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHH
Q 002729 683 YFVNDYKQKNMDVLDPNCQPKRS--DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRL 758 (887)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~r~--~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l 758 (887)
.....+... .+. +...|. ..+++++.+++|+++++ .|....+++++.++++..|+.+|+|+|.++. ++.+
T Consensus 371 VD~~rf~p~----~~~-~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~-~eeL 444 (578)
T PRK15490 371 VLPPSTEPS----SEV-PHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDL-RAEA 444 (578)
T ss_pred cchhhcCcc----chh-hHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchh-HHHH
Confidence 643222110 000 001122 34566677788888875 5999999999999999999999999998876 7789
Q ss_pred HHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCC
Q 002729 759 RAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL 837 (887)
Q Consensus 759 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~ 837 (887)
++.+.+.|+ .++|.|.|.. .+...+|+.+|||+-|+-++| |++++|||+||+|||+.......+-+. -|.
T Consensus 445 k~la~elgL-~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~------dG~ 515 (578)
T PRK15490 445 QKRAEQLGI-LERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFI------EGV 515 (578)
T ss_pred HHHHHHcCC-CCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcc------cCC
Confidence 999999999 5999999984 466778899999999988888 999999999999999765544444222 266
Q ss_pred CCccccC--CHHHH---HHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 838 GEEMIVN--SMKEY---EERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 838 ~~~~~~~--~~~~y---~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
++ +++. |.++. +..+.++..+.+.+..+.++.|+..
T Consensus 516 nG-~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V 556 (578)
T PRK15490 516 SG-FILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFL 556 (578)
T ss_pred cE-EEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 6653 23333 3334555555555545555555543
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=9.9e-16 Score=149.17 Aligned_cols=422 Identities=15% Similarity=0.084 Sum_probs=319.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+.+|.+++..|+|++|+..|+-+...+.-+.+.+..++-|++-+|.|.+|.....++ |+++-....+-....+.|+
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 568999999999999999999998877667899999999999999999998877654 6666666666666667777
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
-++- -.|.+.+.- ..+-...++.+.+..-.|.+|++.|++++..+|+.......++.+|.+..-++-+.+.+.-.+
T Consensus 137 Ek~~-~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 137 EKRI-LTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred HHHH-HHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 5543 344444432 234556788888888899999999999999999988888999999999999999999999999
Q ss_pred hhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhh
Q 002729 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP-TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGN 241 (887)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 241 (887)
+..|+++.+.+.++...++.=+-..|..-......... ..+..-..+-.-+.--.+-+.|++.+-.+++.-| ++..+
T Consensus 213 ~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP--EARlN 290 (557)
T KOG3785|consen 213 RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP--EARLN 290 (557)
T ss_pred HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh--Hhhhh
Confidence 99999999999999888877555555555555443221 2222211111111112344667777666665544 56778
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cC------CCChHHHHhHHH
Q 002729 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS---LQ------PSHPQALTNLGN 312 (887)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~------p~~~~~~~~l~~ 312 (887)
++..|.++++.++|..+.+. .+|..+.-|...|.+....|+--...+.++-+-+ +- -+.......++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 88899999999999887764 6888888888999999888876555544444332 21 122234456777
Q ss_pred HHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Q 002729 313 IYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PLAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 313 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 391 (887)
++.-..++++.+.+++......-++....++++.++...|++.+|.++|-+..... .+.......++.||...|+.+-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 78888899999999999888888888999999999999999999999998775544 23344566789999999999998
Q ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729 392 IQDYIRAITIRPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 392 ~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (887)
-+.+-+.- .|.. -..+..++..+.+.+++--|.+.|...-.++|++
T Consensus 448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 77665421 2322 3345667889999999999999999988888875
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=5.4e-17 Score=150.09 Aligned_cols=205 Identities=26% Similarity=0.240 Sum_probs=171.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
..+...+|..|++.|++..|...++++++.+|++..+|..++.+|.+.|+.+.|.+.|+++++++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHH
Q 002729 113 RKGRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQ 190 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 190 (887)
.+|++++|...|++++.. .+....++.++|.|..+.|+.+.|...|+++++.+|+.+.....++...++.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888764 245667888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChh
Q 002729 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAI 237 (887)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 237 (887)
++++.....+-..+.+...+.+-...|+-+.+-++=.++....|...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 88888877777777777777888888888888887777777777743
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=6.4e-17 Score=168.74 Aligned_cols=229 Identities=18% Similarity=0.130 Sum_probs=164.3
Q ss_pred CChHHHHHHHHHHHhhC---CC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002729 217 GMPQEAIMCYQRAVQTR---PN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~---p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 291 (887)
+..+.++..+.+++... |. ...++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566777777777532 22 56677788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002729 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (887)
Q Consensus 292 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (887)
.|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++... ....+....+++++|+..+++.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 88888888888888888888888888888888888888888888776321 11223345678888888887766543222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CChHHH
Q 002729 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAI-------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP-DFPEAT 443 (887)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~ 443 (887)
. +. .+.+....|+..++ +.++.+. ++.|...++|+.+|.++.+.|++++|+.+|+++++.+| ++.+..
T Consensus 199 ~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 Q--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred c--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 1 22 34555556665443 2333333 45566778999999999999999999999999999986 666665
Q ss_pred HHHHHHh
Q 002729 444 CNLLHTL 450 (887)
Q Consensus 444 ~~l~~~~ 450 (887)
+.++...
T Consensus 275 ~~~~e~~ 281 (296)
T PRK11189 275 YALLELA 281 (296)
T ss_pred HHHHHHH
Confidence 5555443
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1.3e-16 Score=166.45 Aligned_cols=231 Identities=20% Similarity=0.128 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHhcCC---C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 002729 47 HDYDMCIARNEEALRLEP---R-FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (887)
Q Consensus 47 g~~~~A~~~~~~al~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (887)
+..+.++..+.+++...| . .+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455566666666664322 2 245566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (887)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (887)
.|+++++++|++..++..+|.++...|++++|++.|+++++.+|+++... ....+....+++++|+..+.+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~ 198 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKE 198 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence 66666666666666666666666666666666666666666666665211 11112334456666666665554332211
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHH
Q 002729 203 PDAYLNLGNVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDP-RFLEAY 273 (887)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~ 273 (887)
.+. .+..+...|+..++ ..++.+. +..|. ..+|+.+|.++.+.|++++|+.+|++++..+| +..+..
T Consensus 199 --~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 199 --QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred --ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 111 23444445554333 2222222 22222 45677777777777777777777777777665 555554
Q ss_pred HHHHHHHHH
Q 002729 274 NNLGNALKD 282 (887)
Q Consensus 274 ~~la~~~~~ 282 (887)
+.+......
T Consensus 275 ~~~~e~~~~ 283 (296)
T PRK11189 275 YALLELALL 283 (296)
T ss_pred HHHHHHHHH
Confidence 444444433
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.78 E-value=1.3e-16 Score=147.68 Aligned_cols=207 Identities=23% Similarity=0.179 Sum_probs=169.0
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (887)
..+...+|..|.+.|++..|...++++++.+|++..+|..++.+|.+.|+.+.|.+.|++++++.|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 45667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCChhHHHHHHHHHHhc--cCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002729 316 EWNMLPAAASYYKATLAV--TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (887)
.+|++++|...|++++.. .+..+.+|.++|.|..+.|+.+.|.++|+++++.+|+.+.....++....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 888888888888888765 355677788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHH
Q 002729 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (887)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (887)
.+++.....+-..+.+...+.+-...|+-+.|-++=.+.....|...+.
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 8888887777777777777888888888888888877777777776553
No 78
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=2.4e-15 Score=145.36 Aligned_cols=264 Identities=20% Similarity=0.236 Sum_probs=205.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hhHHhhHHHHHHHc
Q 002729 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN------AIAFGNLASTYYER 249 (887)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~la~~~~~~ 249 (887)
|.-+.-.++.++|+..|..+++.+|...++...+|++|...|..+.|+.+-+.+++. |+ ..+...+|.-|...
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh
Confidence 344455667777777777777777777777777777777777777777776665543 33 45667777778888
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hHHHHhHHHHHHHcCChhHHH
Q 002729 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-----PQALTNLGNIYMEWNMLPAAA 324 (887)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~ 324 (887)
|-++.|...|....+...--..+...+..+|....++++|++.-++..+..++. ...+..++..+....+.+.|.
T Consensus 121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 888888888877766544455677788888888888888888888888776654 235667777788888888888
Q ss_pred HHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (887)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (887)
..++++++.+|++..+-..+|.++...|++++|++.++.+++.+|+. +.+...+..+|.++|+.++.+..+.++.+..+
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 88888888888888888889999999999999999999999988876 56788888999999999999999999998887
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
. +++-..++..-....-.+.|..+..+-+...|+-..
T Consensus 281 g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 281 G-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred C-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 6 455666777777777788888888888888887443
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-16 Score=159.67 Aligned_cols=279 Identities=19% Similarity=0.218 Sum_probs=183.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (887)
.+..++++.+|.+|+..+..+++..|++...|...+.++...++|++|.-..++.+++.|.....+...++++...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34455555566666666666666666555555566666666666666666666666665555555555555555555555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN---PLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (887)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (887)
+|...++.. .++ ....|+..+++.+..+ |.-..+-...+.++...|++++|...--..
T Consensus 135 ~A~~~~~~~--------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 135 EAEEKLKSK--------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHHhhhh--------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 555444310 000 0111112222222111 222334455666777777777777777777
Q ss_pred HhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------HHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 162 LRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD------------AYLNLGNVYKALGMPQEAIMCYQRA 229 (887)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (887)
+++++.+..++...+.+++..++.+.|+..|++++.++|+... .+..-|+-..+.|++.+|.+.|..+
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 7777777777777777777777777777777777777766432 4556677778888888888888888
Q ss_pred HhhCCC-----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 230 VQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (887)
Q Consensus 230 ~~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (887)
+.++|+ ...|.+.+.+..+.|+..+|+...+.++++++....++...|.++..+++|++|.+.++++.+...+
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888776 5667788888888888888888888888888888888888888888888888888888888877554
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=2.4e-16 Score=160.56 Aligned_cols=201 Identities=21% Similarity=0.237 Sum_probs=145.8
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (887)
...+..++..+...|++++|+..++++++.+|++..++..++.++...|++++|++.++++++..|.+...+..++.++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCChhHHHHHHHHHHhcc--CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002729 316 EWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ 393 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 393 (887)
..|++++|...+++++... +.....+..+|.++...|++++|...++++++.+|.+...+..+|.++...|++++|..
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777776543 33455666777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (887)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (887)
.++++++..|.++..+..++.++...|+.++|..+.+.+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777777777777777777777777777777777776665543
No 81
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=2.7e-16 Score=160.20 Aligned_cols=203 Identities=20% Similarity=0.203 Sum_probs=187.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAY 111 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 111 (887)
....+..+|.++...|++++|++.++++++.+|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHH
Q 002729 112 MRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (887)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (887)
...|++++|++.+++++... +.....+..+|.++...|++++|...+.++++.+|++...+..++.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998753 4566788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (887)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (887)
..++++++..|.++..+..++.++...|+.++|..+.+.+....|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999998888888888999999999999999998887766543
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=5.9e-17 Score=168.90 Aligned_cols=263 Identities=18% Similarity=0.256 Sum_probs=168.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002729 139 SNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (887)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 218 (887)
+..|..+.+.|...+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLS 298 (887)
Q Consensus 219 ~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (887)
-.+|+.++.+-+...|....... +. ..+++..- ..+.+. ..+..-.+.|-.+..
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~-a~---~~~~~~~~---------~s~~~~-------------~~l~~i~~~fLeaa~ 422 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVS-AG---ENEDFENT---------KSFLDS-------------SHLAHIQELFLEAAR 422 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccc-cC---ccccccCC---------cCCCCH-------------HHHHHHHHHHHHHHH
Confidence 88888888887776554110000 00 00000000 000001 112223334444444
Q ss_pred cCC--CChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002729 299 LQP--SHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLV 376 (887)
Q Consensus 299 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 376 (887)
..| .++++...||.+|...|+|++|+.+|+.++...|++...|+.||-.+....+.++|+..|++++++.|....+++
T Consensus 423 ~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 423 QLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred hCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 444 456666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHhCCCHHHHHH
Q 002729 377 NRGNTYKEIGRVTDAIQDYIRAITIRPT----------MAEAHANLASAYKDSGHVEAAIK 427 (887)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~ 427 (887)
++|.++..+|.|++|.+.|-.++.+.+. +..+|..|=.++..+++.+-+.+
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 6666666666666666666666665332 12456666666666666654433
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=4.3e-15 Score=160.21 Aligned_cols=234 Identities=24% Similarity=0.317 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc-----
Q 002729 200 PTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT--------RPN-AIAFGNLASTYYERGQADMAILYYKQAIGC----- 265 (887)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----- 265 (887)
|.-..+...++..|...|++++|+..++.+++. .|. ......+|..|...+++.+|+.+|++++.+
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333345555677777777777777777776665 223 233334666666666666666666666632
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc
Q 002729 266 ---DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP--------SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334 (887)
Q Consensus 266 ---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 334 (887)
+|....++.+|+.+|.+.|++++|..++++++++.. .-...+..++.++..++++++|..++++++++.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 344445666677777777777777777766665421 112234445555555555555555555554431
Q ss_pred C--------CCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 335 T--------GLSAPFNNLAVIYKQQGNYADAISCYNEVLRID--------PLAADGLVNRGNTYKEIGRVTDAIQDYIRA 398 (887)
Q Consensus 335 ~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 398 (887)
. ..+..+.++|.+|..+|++++|.++|+++++.. +.....+..+|..|.+.+++.+|.+.|..+
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1 122334455555555555555555555554432 111234444555555555555555554444
Q ss_pred Hhc-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002729 399 ITI-------RPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433 (887)
Q Consensus 399 l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 433 (887)
..+ .|+....+.+|+.+|..+|++++|.++.++++
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 12223344445555555555555555444443
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.6e-16 Score=158.43 Aligned_cols=293 Identities=23% Similarity=0.221 Sum_probs=179.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCC
Q 002729 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGD 184 (887)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 184 (887)
...+..+++..+|.+|+..+..+++..|++...|...+..+...+++++|.-..++.+++.|.........++++...++
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555444455555544444
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-hhHHhhHHHHHHHcCChHHHHHHHH
Q 002729 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR---PN-AIAFGNLASTYYERGQADMAILYYK 260 (887)
Q Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~la~~~~~~g~~~~A~~~~~ 260 (887)
..+|.+.++. ..++ ....|+..+++..... |. ...-..-+.++...|++++|...--
T Consensus 133 ~i~A~~~~~~--------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 133 LIEAEEKLKS--------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHHhhh--------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 4444444430 0000 1112222222222211 11 2223334455555566666666655
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh
Q 002729 261 QAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP 340 (887)
Q Consensus 261 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 340 (887)
..+++++.+.++.+..|.++....+.+.|+..|++++.++|+...+-... . .|+....
T Consensus 194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~----~------------------~~k~le~ 251 (486)
T KOG0550|consen 194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS----M------------------MPKKLEV 251 (486)
T ss_pred HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh----h------------------hHHHHHH
Confidence 56666666666666666666666666666666666666665543321110 0 0111233
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAY 416 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 416 (887)
+..-|.-.++.|++.+|.++|.+++.++|++ ...|.+++.+..++|+..+|+...+.+++++|....++...|.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 5566788889999999999999999999976 447888899999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCC
Q 002729 417 KDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~ 438 (887)
...+++++|++.|+++++...+
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999988655
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.73 E-value=6.6e-15 Score=158.77 Aligned_cols=237 Identities=24% Similarity=0.390 Sum_probs=189.7
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 002729 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL--------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--- 233 (887)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 233 (887)
.|.-..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++.+|+.+|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4555667777888888888888888888888876 33334455568888888999999999998888752
Q ss_pred -----CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 234 -----PN-AIAFGNLASTYYERGQADMAILYYKQAIGC--------DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (887)
Q Consensus 234 -----p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (887)
|. ..++.+|+..|...|++++|..++++++++ .|.-...+..++.++...+++++|..++++++++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 22 677888888899999999988888888754 2333456778888999999999999999998876
Q ss_pred C-----CC---ChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc--------CCCchhHhhHHHHHHHcCCHHHHHHHHHH
Q 002729 300 Q-----PS---HPQALTNLGNIYMEWNMLPAAASYYKATLAVT--------TGLSAPFNNLAVIYKQQGNYADAISCYNE 363 (887)
Q Consensus 300 ~-----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 363 (887)
. ++ -+..+.++|.+|..+|++++|.++|++++.+. +.....++.+|..|.+.+++.+|.+.|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 2 22 35678899999999999999999999998774 22355688899999999999999999998
Q ss_pred HHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 364 VLRI-------DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (887)
Q Consensus 364 al~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (887)
+..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8765 3444568999999999999999999999988753
No 86
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=2.1e-15 Score=156.23 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=96.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH--HHHHH
Q 002729 12 SGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI--DLAIR 88 (887)
Q Consensus 12 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~ 88 (887)
.+++++|+..++++++.+|.+..+|..++.++..+| ++++++..++++++.+|++..+|..++.++.+.|+. ++++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 344455555555555555555555555555554444 344555555555555555555555555444444432 34444
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCh----HHHHHHHHHH
Q 002729 89 YYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---GLV----QEAYSCYLEA 161 (887)
Q Consensus 89 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~a 161 (887)
+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|..++.++... |.+ ++++.+..++
T Consensus 130 ~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~a 209 (320)
T PLN02789 130 FTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDA 209 (320)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555544444333 111 2334444444
Q ss_pred HhhCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002729 162 LRIQPTFAIAWSNLAGLFME----SGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (887)
Q Consensus 162 l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 214 (887)
+..+|++..+|+.++.++.. .++..+|.+.+.+++..+|.++.++..++.+|.
T Consensus 210 I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 210 ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 44444444444444444444 222333444444444444444444444444444
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.6e-13 Score=143.36 Aligned_cols=427 Identities=12% Similarity=0.010 Sum_probs=290.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (887)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (887)
..++.-...+...|+|++|.+...+++...|++..+......++.+.+.|++|++..++-...... ....+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 445555566788899999999999999999999999999999999999999999665543322222 1223688999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYK 193 (887)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (887)
.+..++|+..++ ..++.+.......+.+++++|+|++|..+|+...+.+.++.+............ ...+. ..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--~l~~~--~~ 164 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--ALQVQ--LL 164 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--hhhHH--HH
Confidence 999999999998 456667778899999999999999999999999888766655433222211110 01111 23
Q ss_pred HHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CC--------hhHHhhHHHHHHHcCChHHHH
Q 002729 194 EAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR--------PN--------AIAFGNLASTYYERGQADMAI 256 (887)
Q Consensus 194 ~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~--------~~~~~~la~~~~~~g~~~~A~ 256 (887)
+.....|. +.+.+++.+.++...|+|.+|++.+++++.+. .+ ......++.++...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33333444 56688999999999999999999999994421 11 335567888999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHH--HHHHHHHHHHhcCCC----------ChHHHHhHHHHHHHcCChh
Q 002729 257 LYYKQAIGCDPRFLEAYNNLGNALKDV---GRVD--EAIQCYNQCLSLQPS----------HPQALTNLGNIYMEWNMLP 321 (887)
Q Consensus 257 ~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~--~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~~~ 321 (887)
..|...+..+|.+........+-+... .++- .++..++......++ -..++.+.+.+.+-.+..+
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~ 324 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD 324 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999988776653322222211111 1111 122222222211111 1234555666666666666
Q ss_pred HHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 002729 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAI- 399 (887)
Q Consensus 322 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al- 399 (887)
.+.+.....-...|..............+...+.+|.+++....+.+|.. ..+...++.+....|+++.|++.+...+
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 66666555544455443333334444444458999999999999999987 6788899999999999999999999333
Q ss_pred -------hcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCChHHHHHHHHHhhhcCChhhHhHHHHH
Q 002729 400 -------TIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL-------RPDFPEATCNLLHTLQCVCSWEDRDRMFSE 465 (887)
Q Consensus 400 -------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 465 (887)
+.. ..+.+-..+...+.+.++.+.|...+.+++.. .+.-...+..++..-...|.-+++...+++
T Consensus 405 ~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 405 SWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 332 23455666777788888777677777666653 222222333444455566888888888887
Q ss_pred HHHH
Q 002729 466 VEGI 469 (887)
Q Consensus 466 ~~~~ 469 (887)
+.++
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 7763
No 88
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=4.8e-15 Score=153.62 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=168.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh--
Q 002729 41 AIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL-- 117 (887)
Q Consensus 41 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-- 117 (887)
.++...+++++|+..+.++++.+|.+..+|..++.++...| ++++++..++++++.+|++..+|...+.++.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 34455677888999999999999999999999999988888 678999999999999999999999888888888764
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc---CCH----HHHHH
Q 002729 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES---GDL----NRALQ 190 (887)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~ 190 (887)
++++.+++++++.+|++..+|...+.++...|+++++++.+.++++.+|.+..+|+..+.+.... |.+ +++++
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67888888999999999999999999999999999999999999999999999998888887665 222 46777
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHH
Q 002729 191 YYKEAVKLKPTFPDAYLNLGNVYKA----LGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYE 248 (887)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~ 248 (887)
+..+++..+|++..+|..++.++.. .++..+|.+.+.+++...|+ ..++..++.+|..
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 7788888888888888888888877 34456677777777666555 6666666666664
No 89
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=1.5e-11 Score=129.59 Aligned_cols=449 Identities=15% Similarity=0.180 Sum_probs=306.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNP--LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKE 79 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 79 (887)
++.-...+..+|+...-...|++++..-| .+..+|-.........+-.+-++..|++.++..|...+ .....+.+
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~L~~ 181 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEYLAK 181 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHHHHh
Confidence 34445677788888888888888887766 34556666666666677777888888888888876533 33445667
Q ss_pred cCCHHHHHHHHHHHHhcC------------------------CC---------------------cHHHHHHHHHHHHHc
Q 002729 80 KGDIDLAIRYYLVAIELR------------------------PN---------------------FADAWSNLASAYMRK 114 (887)
Q Consensus 80 ~g~~~~A~~~~~~al~~~------------------------p~---------------------~~~~~~~la~~~~~~ 114 (887)
.+++++|.+.+...+..+ |+ -...|..||..|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 777777777776665431 11 123577888888899
Q ss_pred CChHHHHHHHHHHHHhCCC---CHHHH-----HHHHHHHHHcC-------------ChHHHHHHHHHHH-----------
Q 002729 115 GRLNEAAQCCRQALALNPL---LVDAH-----SNLGNLMKAQG-------------LVQEAYSCYLEAL----------- 162 (887)
Q Consensus 115 g~~~~A~~~~~~~l~~~p~---~~~~~-----~~la~~~~~~g-------------~~~~A~~~~~~al----------- 162 (887)
|.+++|...|++++..--. -..++ +.-..+..+++ +.+-....|+..+
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999888765321 11111 11111111111 1222333344333
Q ss_pred -hhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002729 163 -RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN 235 (887)
Q Consensus 163 -~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 235 (887)
+.+|++...|.....+ ..|+..+-+..|.++++. +|.. ...|..++..|...|+.+.|..+|+++.+..-.
T Consensus 342 LRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 3367777777665554 367788888888888763 4432 347889999999999999999999999876432
Q ss_pred -----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC------------------CcHHHHHHHHHHHHHcCCHHHHHHH
Q 002729 236 -----AIAFGNLASTYYERGQADMAILYYKQAIGCDP------------------RFLEAYNNLGNALKDVGRVDEAIQC 292 (887)
Q Consensus 236 -----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~ 292 (887)
...|..-|..-.+..+++.|.++.+++...-. .+..+|..++......|-++.....
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 67788888888889999999999988873211 1234677888888888999999999
Q ss_pred HHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc--CCCchhHhhHHHHHH---HcCCHHHHHHHHHHHHhc
Q 002729 293 YNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT--TGLSAPFNNLAVIYK---QQGNYADAISCYNEVLRI 367 (887)
Q Consensus 293 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~ 367 (887)
|++++++.--.|.+..+.|..+.+..-++++.+.|++.+.+. |...++|+..-..+. ...+.+.|..+|+++++.
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999888888999999999999999999999999988886 445566665444333 334789999999999998
Q ss_pred CCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHH------------------------------------HhcCCCc--HH
Q 002729 368 DPLA-A-DGLVNRGNTYKEIGRVTDAIQDYIRA------------------------------------ITIRPTM--AE 407 (887)
Q Consensus 368 ~p~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~a------------------------------------l~~~p~~--~~ 407 (887)
.|.. . ..+...+..-.+-|....|+.+|+++ ++.-|+. .+
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 7632 2 24445555555666666666655554 3333332 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CC-ChHHHHHHHHHhhhcCC
Q 002729 408 AHANLASAYKDSGHVEAAIKSYKQALLLR-PD-FPEATCNLLHTLQCVCS 455 (887)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~l~~~~~~~g~ 455 (887)
.....+.+-.+.|..+.|+.+|.-.-++. |. +.+.|...-..-...|+
T Consensus 660 mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 34556777788888888888888887764 32 45556655555566666
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=1.2e-13 Score=150.50 Aligned_cols=205 Identities=14% Similarity=0.028 Sum_probs=156.6
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (887)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (887)
+|+.+.++..+|..+...|+.+++.+.+.++.+..+.+ .+.....+..+...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888888889988888888888888888887776644 456677788888889999999999998888888877666
Q ss_pred HHHHHHHHcCC----hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 002729 106 NLASAYMRKGR----LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME 181 (887)
Q Consensus 106 ~la~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 181 (887)
. +..+...|+ ...+.+.+......+|........++.++..+|++++|+..++++++..|++..++..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 444444443 44444444433345566667777788888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 182 SGDLNRALQYYKEAVKLKPTFPD----AYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (887)
Q Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (887)
.|++++|+..+++.+...|.++. .+..++.++...|++++|+..++++....|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 88888888888888887664332 455788888888888888888888765555
No 91
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.67 E-value=2.3e-15 Score=164.97 Aligned_cols=156 Identities=14% Similarity=0.131 Sum_probs=130.1
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (887)
Q Consensus 712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 789 (887)
+.+++++++++ .|..+.+++++..+.++.|+.+|+|+|.++. ++.+++.+++.|+ .++|.|.|.++.++...+|+.
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~-~~~l~~~~~~~~l-~~~V~~~G~~~~~el~~~l~~ 298 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPW-ERRLRTLIEQYQL-EDVVEMPGFKPSHEVKAMLDD 298 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECchh-HHHHHHHHHHcCC-CCeEEEeCCCCHHHHHHHHHh
Confidence 34567777776 5999999999999988889999999998876 7789999999999 589999999999999999999
Q ss_pred CcEEecCCC------CCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc-C
Q 002729 790 ADLFLDTPL------CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL-D 859 (887)
Q Consensus 790 ~d~~ld~~~------~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~-d 859 (887)
+|+++-|+- +.| +++++|||++|+|||+-......+-+.. |.++ +++ .|.+++.+...++.. |
T Consensus 299 aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~------~~~G-~lv~~~d~~~la~ai~~l~~~d 371 (406)
T PRK15427 299 ADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEA------DKSG-WLVPENDAQALAQRLAAFSQLD 371 (406)
T ss_pred CCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcC------CCce-EEeCCCCHHHHHHHHHHHHhCC
Confidence 999999864 255 8999999999999998765554443221 5556 554 589999999999999 9
Q ss_pred HHHHHHHHHHHHhhccc
Q 002729 860 RQKLQALTNKLKSVRLT 876 (887)
Q Consensus 860 ~~~~~~~~~~~~~~~~~ 876 (887)
++.+++++++.|+....
T Consensus 372 ~~~~~~~~~~ar~~v~~ 388 (406)
T PRK15427 372 TDELAPVVKRAREKVET 388 (406)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998876543
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=2.4e-13 Score=147.97 Aligned_cols=204 Identities=20% Similarity=0.083 Sum_probs=146.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 002729 63 EPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHS 139 (887)
Q Consensus 63 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 139 (887)
+|+.+.++..+|..+...|+.++|.+.+.++.+..+.+ .+.....+..+...|++++|...++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67888888888888888888888888888877766543 445666777888888888888888888888888876665
Q ss_pred HHHHHHHHcC----ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002729 140 NLGNLMKAQG----LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKA 215 (887)
Q Consensus 140 ~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 215 (887)
. +..+...| ....+.+.+......+|........++.++...|++++|+..++++++..|+++..+..++.++..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 44444433 334444444333345566666777777788888888888888888888888887778888888888
Q ss_pred cCChHHHHHHHHHHHhhCCC-----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002729 216 LGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (887)
Q Consensus 216 ~g~~~~A~~~~~~~~~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 267 (887)
.|++++|+..+++.+...|. ...+..++.++...|++++|+..+++++...|
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 88888888888887776542 22345677777777777777777777664444
No 93
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.65 E-value=8e-15 Score=160.20 Aligned_cols=319 Identities=13% Similarity=0.189 Sum_probs=202.9
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCC--C----HHHHHHHHHhC
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM--S----SDMIAKLINED 611 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~i~~~ 611 (887)
||-++.+++..--+..++..+.+.+.+.+++|+++....... .....+.....++..+... . ...+.+.++..
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG-DYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKN 79 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCc-chHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcC
Confidence 577888887222233677888889988889998888654432 2223333322222222111 1 24566677889
Q ss_pred CCeEEEecCCcCCCCchhhhhcCCCceEEecc-ccCCCCCCCc----------ccEEEecCccCCCCcC--C----CCcc
Q 002729 612 KIQILINLNGYTKGARNEIFAMQPAPIQVSYM-GFPGTTGASY----------IDYLVTDEFVSPLRYA--H----IYSE 674 (887)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~-g~~~t~g~~~----------~d~~~~d~~~~p~~~~--~----~~~e 674 (887)
++||++-.+..+..--..+......|+.+.+. +...+..... .-+..+|.++.+.... . ...+
T Consensus 80 ~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~ 159 (358)
T cd03812 80 KYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGKVKNK 159 (358)
T ss_pred CCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhCCCcc
Confidence 99999755444211111111123455544322 1111111110 0011234444443321 1 1235
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (887)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (887)
++.-+|++.....+.. .+.....+...+.+++.+++++++++ .|..+.+++++..+.+..|+.+++++|.++
T Consensus 160 ~~~vi~ngvd~~~~~~------~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~ 233 (358)
T cd03812 160 KFKVIPNGIDLEKFIF------NEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDGE 233 (358)
T ss_pred cEEEEeccCcHHHcCC------CchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCCc
Confidence 6777776543221110 01111124556677788888888876 699999999999999999999999999877
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHH
Q 002729 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (887)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~ 831 (887)
. ...+++.+.+.|+ .++|.|.|. .++...+|+.+|+++-|+-+.| |++.+|||++|+|||+.......+-++
T Consensus 234 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~--- 306 (358)
T cd03812 234 L-EEEIKKKVKELGL-EDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITKEVDLT--- 306 (358)
T ss_pred h-HHHHHHHHHhcCC-CCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCchhhhhc---
Confidence 6 6678888888999 689999998 4566778999999999977777 999999999999999877666555333
Q ss_pred HHhcCCCCcccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 832 CLATGLGEEMIV-NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 832 l~~~g~~~~~~~-~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
. |..- ++. ++++++.+...++.+|++.++.++...+...
T Consensus 307 --~-~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 307 --D-LVKF-LSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred --c-CccE-EeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 2 2222 444 4569999999999999999988887776554
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.65 E-value=3e-11 Score=127.42 Aligned_cols=414 Identities=14% Similarity=0.173 Sum_probs=229.4
Q ss_pred HHHHHHHHhhCCCchhHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 19 LEHSNSVYERNPLRTDNLLLLGAIYYQL--------HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYY 90 (887)
Q Consensus 19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 90 (887)
.-+|+++++.-|.+...|+..-..-... ..|..--..|++++-.-.+-+..|......+..+|+...-...|
T Consensus 46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf 125 (835)
T KOG2047|consen 46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF 125 (835)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence 3456666666666665555433221111 12344444455555444444555666666666666666666666
Q ss_pred HHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----
Q 002729 91 LVAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR----- 163 (887)
Q Consensus 91 ~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 163 (887)
++++..-|- +...|-.........+-.+-++..|++.++.+|... ......+...++.++|.+.+...+.
T Consensus 126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~ 202 (835)
T KOG2047|consen 126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFV 202 (835)
T ss_pred HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhh
Confidence 666655442 333444444444455555555555555555555432 2233344444555555444433332
Q ss_pred ---------------------------------------hCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---
Q 002729 164 ---------------------------------------IQPTF-AIAWSNLAGLFMESGDLNRALQYYKEAVKLKP--- 200 (887)
Q Consensus 164 ---------------------------------------~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--- 200 (887)
..++. ...|..|+..|.+.|.+++|...|++++..--
T Consensus 203 sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr 282 (835)
T KOG2047|consen 203 SKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR 282 (835)
T ss_pred hhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh
Confidence 22221 34677888888888888888888888876421
Q ss_pred CCHHHHHHHH-----HHHHH-------cC------ChHHHHHHHHHHHhh------------CCC-hhHHhhHHHHHHHc
Q 002729 201 TFPDAYLNLG-----NVYKA-------LG------MPQEAIMCYQRAVQT------------RPN-AIAFGNLASTYYER 249 (887)
Q Consensus 201 ~~~~~~~~l~-----~~~~~-------~g------~~~~A~~~~~~~~~~------------~p~-~~~~~~la~~~~~~ 249 (887)
+...++...+ .+-.+ .+ +.+-....|+.++.. +|+ ...|.... -+..
T Consensus 283 DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e 360 (835)
T KOG2047|consen 283 DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYE 360 (835)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhc
Confidence 1111111111 00000 11 112233344444432 232 33443333 3345
Q ss_pred CChHHHHHHHHHHH-hcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----ChHHHHhHHHHHHHcCC
Q 002729 250 GQADMAILYYKQAI-GCDPRF-----LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS----HPQALTNLGNIYMEWNM 319 (887)
Q Consensus 250 g~~~~A~~~~~~~l-~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~ 319 (887)
|+..+-+..|.+++ ..+|.. ...|..+|..|...|+.+.|..+|+++.+..-. -..+|...|..-.+..+
T Consensus 361 ~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred CChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh
Confidence 66666677776666 334432 245677777777777777777777777765322 14567777777777777
Q ss_pred hhHHHHHHHHHHhccCC------------------CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002729 320 LPAAASYYKATLAVTTG------------------LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (887)
Q Consensus 320 ~~~A~~~~~~~~~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (887)
++.|.++.+.+...... +...|..++......|-++.-...|++++++.--.|....+.|..
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmf 520 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMF 520 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77777777766543211 233466677777777777777777777777776677777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHcCC
Q 002729 382 YKEIGRVTDAIQDYIRAITIR--PTMAEAHANLASAYK-D--SGHVEAAIKSYKQALLLRP 437 (887)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~-~--~g~~~~A~~~~~~al~~~p 437 (887)
+....-++++.+.|++.+.+. |.-.++|...-.-.. + .-+.+.|+.+|+++++..|
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 777777777777777777764 444455544332222 2 2266777777777777665
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=3.6e-12 Score=139.78 Aligned_cols=296 Identities=18% Similarity=0.151 Sum_probs=220.4
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
.+..+..+...|++++|++.+++....-.+....+-..|.++.++|++++|...|...++.+|++...+..+..+.....
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 35567889999999999999999888888888999999999999999999999999999999999999999998884333
Q ss_pred -----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002729 82 -----DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAY 155 (887)
Q Consensus 82 -----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 155 (887)
+.+.-..+|++..+..|..... ..+...+..-..+. .+..++...+..+ -|..+..+-.+|....+..-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~Kg--vPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKG--VPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHcChhHHHHHH
Confidence 5677788888888888774322 22222222222333 3344445554443 4555666656665444433333
Q ss_pred HHHHHHHhh---------------CCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002729 156 SCYLEALRI---------------QPTFA--IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM 218 (887)
Q Consensus 156 ~~~~~al~~---------------~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 218 (887)
.++...... .|... .+++.+++.|...|++++|+++++++++..|..++.+...|.++...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 333333221 12222 4567889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC--CCc-------HHHHHHHHHHHHHcCCHHH
Q 002729 219 PQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD--PRF-------LEAYNNLGNALKDVGRVDE 288 (887)
Q Consensus 219 ~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~-------~~~~~~la~~~~~~g~~~~ 288 (887)
+.+|.+.++.+-+++.. -..-...+..+.+.|+.++|.+.+......+ |.. .......|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999998887 4455566778889999999999988776543 211 1223456899999999999
Q ss_pred HHHHHHHHHhcC
Q 002729 289 AIQCYNQCLSLQ 300 (887)
Q Consensus 289 A~~~~~~al~~~ 300 (887)
|++.|..+.+..
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999998887753
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.8e-13 Score=128.46 Aligned_cols=284 Identities=18% Similarity=0.162 Sum_probs=206.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002729 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (887)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (887)
..+.+..+|..|++++..-.+.+|.+...+..+|.||+...+|..|..+|++.-...|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 45588899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (887)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (887)
+.+...+...+.-.......-+.+.+..+++..+..+.++.- ..++.+...+.|.+.++.|++++|.+-|+.+++...
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 999888765422234455566677778888888877776642 125677888999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCC-------------------------HHHHHHHHHHHHHcC
Q 002729 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK----PTF-------------------------PDAYLNLGNVYKALG 217 (887)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~-------------------------~~~~~~l~~~~~~~g 217 (887)
-++..-++++.+.++.+++..|+++..+.++.. |.. .++++..+-++++.+
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 888888999999999999999999988887642 221 113344445555566
Q ss_pred ChHHHHHHHHHHHhhCC---ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 218 MPQEAIMCYQRAVQTRP---NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCY 293 (887)
Q Consensus 218 ~~~~A~~~~~~~~~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (887)
+++.|.+.+..+.-... ++.++.+++..-. .+++.+...-++-.++++|-..+++.++..+|++..-++-|..++
T Consensus 256 n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 66655555443322111 1334444433221 233444444455555556655555666666666555555555444
No 97
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.62 E-value=2.7e-14 Score=156.28 Aligned_cols=319 Identities=13% Similarity=0.107 Sum_probs=196.3
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCCh-HHHHHHHhhc-CceEECCCCCHHH---H----HHH-
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGT-EWRQRTQSEA-EHFVDVSAMSSDM---I----AKL- 607 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~---~----~~~- 607 (887)
||.++++.+..--+...+..+.+.+++.++||.++...+..+. .....+.... .... .++... . ...
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~ 77 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADI---ELSEEEKEIYLEWNEENA 77 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCC---CCCHHHHHHHHHHHHHHh
Confidence 6888888875555667888889999998999888876553321 1112222211 1111 222211 1 111
Q ss_pred ---HHhCCCeEEEecCCcCCCCchhhhhcC-CCceEEeccccCCCC----------CCCcccEEEecCccCCCCcCCCCc
Q 002729 608 ---INEDKIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTT----------GASYIDYLVTDEFVSPLRYAHIYS 673 (887)
Q Consensus 608 ---i~~~~~dil~~~~~~~~~~~~~~~~~r-~apvq~~~~g~~~t~----------g~~~~d~~~~d~~~~p~~~~~~~~ 673 (887)
+...++||++--+.+. .-+..+..+ ..|+.+++-+...+. .+...|.+++-. +......+.
T Consensus 78 ~~~~~~~~~Dvv~~h~~~~--~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~~~~~ 152 (372)
T cd03792 78 ERPLLDLDADVVVIHDPQP--LALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVPPQVP 152 (372)
T ss_pred ccccccCCCCEEEECCCCc--hhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcCCCCC
Confidence 2256899996432221 112222223 567655442222111 011233333211 111122222
Q ss_pred cceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCC
Q 002729 674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP 751 (887)
Q Consensus 674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~ 751 (887)
.+...+|++.-...... ....+......|.++|++++.+++++++|+ .|..+.+++++..+.+..|+.+|+++|.+
T Consensus 153 ~~~~vipngvd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g 230 (372)
T cd03792 153 PRKVIIPPSIDPLSGKN--RELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVGSG 230 (372)
T ss_pred CceEEeCCCCCCCcccc--CCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEeCC
Confidence 22236776543211000 000000011246678998888888888887 59999999999999888899999999976
Q ss_pred hhh----HHHHHHHHHHcCCCCCcEEEcCCC--CcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchh
Q 002729 752 AAG----EMRLRAYAVAQGVQPDQIIFTDVA--MKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (887)
Q Consensus 752 ~~~----~~~l~~~~~~~g~~~~r~~~~~~~--~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~ 824 (887)
+.. ...+++..+..|+ .++|.|.|.. +..+...+|+.+|+++-|..++| |.+++|||++|+|||+.......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~ 309 (372)
T cd03792 231 ATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGGIP 309 (372)
T ss_pred CCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCCch
Confidence 531 2223444445677 5789999876 67788889999999999988888 99999999999999986655444
Q ss_pred hhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 825 TRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 825 ~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.-+. =|..+ +++.+.++......++.+|++.++.++++.++..
T Consensus 310 ~~i~------~~~~g-~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~ 352 (372)
T cd03792 310 LQIE------DGETG-FLVDTVEEAAVRILYLLRDPELRRKMGANAREHV 352 (372)
T ss_pred hhcc------cCCce-EEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3221 25666 7788888888888889999999999988887754
No 98
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.62 E-value=1.2e-14 Score=160.75 Aligned_cols=164 Identities=17% Similarity=0.088 Sum_probs=134.1
Q ss_pred CCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhc---CCceEEEecCChhh-------HHHHHHHHHH-cCCCCC
Q 002729 704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRV---PNSALWLLRFPAAG-------EMRLRAYAVA-QGVQPD 770 (887)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~---p~~~l~~~~~~~~~-------~~~l~~~~~~-~g~~~~ 770 (887)
+...+.+++.++|++++++ .|..+.+++++.++.+.. |+.+|+++|.++.. .+.+++.+.+ .|+ .+
T Consensus 202 ~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~ 280 (392)
T cd03805 202 PGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-ED 280 (392)
T ss_pred ccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-Cc
Confidence 3445567778888888886 589999999999998886 89999999976431 2577888888 899 59
Q ss_pred cEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHH
Q 002729 771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEY 849 (887)
Q Consensus 771 r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y 849 (887)
+|+|.|.++.++....|..+|++|-|..+.| |++.+|||++|+|||+.......+.+.. |-.+.++..|++++
T Consensus 281 ~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~------~~~g~~~~~~~~~~ 354 (392)
T cd03805 281 QVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGGPLETVVD------GETGFLCEPTPEEF 354 (392)
T ss_pred eEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCCcHHHhcc------CCceEEeCCCHHHH
Confidence 9999999999999999999999999877777 9999999999999998776655554432 33452444789999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 850 EERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 850 ~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.+....+..|++.+.+++++.++..
T Consensus 355 a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 355 AEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHH
Confidence 9999999999999999998887654
No 99
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.62 E-value=1.1e-14 Score=160.75 Aligned_cols=311 Identities=10% Similarity=0.069 Sum_probs=192.0
Q ss_pred eeeeecCCCCCChhH--HhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcC-ceEECC-----------CCCHHH
Q 002729 538 RVGYVSSDFGNHPLS--HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE-HFVDVS-----------AMSSDM 603 (887)
Q Consensus 538 riGyvs~d~~~h~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~ 603 (887)
||-+|+..+..+.-| ..+..+.+.+.+.++||++++........ .......+. ++.... ......
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~-~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~ 79 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVG-IRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPL 79 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCC-cccccCceeEEEecceeccCCccccchhhhHHH
Confidence 466777766555433 56777777887778999999854221100 000111000 111110 011345
Q ss_pred HHHHHHhCCCeEEEecCCcCCCCchhhh--hcCCCceEEecccc---CCCCC----------CCcccEEEecC-c-cCCC
Q 002729 604 IAKLINEDKIQILINLNGYTKGARNEIF--AMQPAPIQVSYMGF---PGTTG----------ASYIDYLVTDE-F-VSPL 666 (887)
Q Consensus 604 ~~~~i~~~~~dil~~~~~~~~~~~~~~~--~~r~apvq~~~~g~---~~t~g----------~~~~d~~~~d~-~-~~p~ 666 (887)
+.+.+...++||++--+.+....-..++ .....|+..+.-+. +.... ....|.+++-. . ..-.
T Consensus 80 l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 159 (398)
T cd03796 80 LRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKENT 159 (398)
T ss_pred HHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhHH
Confidence 6777788899999533322211101112 22346776664332 11110 12344444311 1 1000
Q ss_pred -CcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc
Q 002729 667 -RYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS 743 (887)
Q Consensus 667 -~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~ 743 (887)
.......+++..+|++.....+. +.... .+++.+++++++++ .|..+.+++++..+.+..|+.
T Consensus 160 ~~~~~~~~~k~~vi~ngvd~~~f~--------~~~~~------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~ 225 (398)
T cd03796 160 VLRASLDPERVSVIPNAVDSSDFT--------PDPSK------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNV 225 (398)
T ss_pred HHHhCCChhhEEEEcCccCHHHcC--------CCccc------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCE
Confidence 00112245777788754321111 11000 23466788888876 599999999999998899999
Q ss_pred eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccc
Q 002729 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK 822 (887)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~ 822 (887)
+|+++|.++. .+.+++.+.+.|+ .++|.|.|..+.++....|..+|+++-|+.+.| |.+++|||+||+|||+-....
T Consensus 226 ~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg 303 (398)
T cd03796 226 RFIIGGDGPK-RILLEEMREKYNL-QDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG 303 (398)
T ss_pred EEEEEeCCch-HHHHHHHHHHhCC-CCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC
Confidence 9999998775 6788999999999 589999999999999999999999999976766 999999999999999876555
Q ss_pred hhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729 823 MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKS 872 (887)
Q Consensus 823 ~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~ 872 (887)
..+-+.. |-.- ++..|.+++++...++..+......++.+.++
T Consensus 304 ~~e~i~~------~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~ 346 (398)
T cd03796 304 IPEVLPP------DMIL-LAEPDVESIVRKLEEAISILRTGKHDPWSFHN 346 (398)
T ss_pred chhheeC------Ccee-ecCCCHHHHHHHHHHHHhChhhhhhHHHHHHH
Confidence 5553331 2112 45578999999999998876655444444443
No 100
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.62 E-value=4.4e-14 Score=154.90 Aligned_cols=318 Identities=17% Similarity=0.149 Sum_probs=198.4
Q ss_pred eeeeecCCCC-CChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCCHHHHHHHHHhCCCeEE
Q 002729 538 RVGYVSSDFG-NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMSSDMIAKLINEDKIQIL 616 (887)
Q Consensus 538 riGyvs~d~~-~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dil 616 (887)
||+||++... ..=+..++..+.+.+.+.+.+|.++...............................+.+.++..++||+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 6899987654 222446888888888888888877775543221111000000111111122235677889999999999
Q ss_pred EecCCcCC--CCchhhhh----cCCCceEEecccc-CCCCCC--Ccc---cEEEecCccCCC-C-c----CCCCccceee
Q 002729 617 INLNGYTK--GARNEIFA----MQPAPIQVSYMGF-PGTTGA--SYI---DYLVTDEFVSPL-R-Y----AHIYSEKLVH 678 (887)
Q Consensus 617 ~~~~~~~~--~~~~~~~~----~r~apvq~~~~g~-~~t~g~--~~~---d~~~~d~~~~p~-~-~----~~~~~e~~~~ 678 (887)
+-...+.. +.....+. .+..|+.++.-+. +..... ..+ -+..+|.++.++ . . ...+.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~ 160 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPEKIAV 160 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCCcEEE
Confidence 86542211 11111111 2557777766554 221111 000 011223333332 1 1 2223578888
Q ss_pred cCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729 679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM 756 (887)
Q Consensus 679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 756 (887)
+|++.....+. + ...+...+.+.+.+++++++++ .|..+.+++++.++.++.|+.+|+++|.+.....
T Consensus 161 i~~~~~~~~~~--------~--~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~ 230 (366)
T cd03822 161 IPHGVPDPPAE--------P--PESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLE 230 (366)
T ss_pred eCCCCcCcccC--------C--chhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchh
Confidence 88755322111 0 1111223344556666666665 5889999999999999899999999997654222
Q ss_pred HHH----HHHHHcCCCCCcEEEcCC-CCcHHHHHhccCCcEEecCCCCC--C-chhHHHHHHhCCceeeecccchhhhhH
Q 002729 757 RLR----AYAVAQGVQPDQIIFTDV-AMKQEHIRRSSLADLFLDTPLCN--A-HTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 757 ~l~----~~~~~~g~~~~r~~~~~~-~~~~~~~~~~~~~d~~ld~~~~~--g-~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
... +.+.+.|+ .++|+|.|. ++.++....|+.+|+++-|+.+. | |.+.+|||++|+|||+.+... ...+
T Consensus 231 ~~~~~~~~~i~~~~~-~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i- 307 (366)
T cd03822 231 RYRGEAYALAERLGL-ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEV- 307 (366)
T ss_pred hhhhhhHhHHHhcCC-CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hhee-
Confidence 222 23778898 689999987 88999999999999999998777 6 899999999999999866543 2211
Q ss_pred HHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 829 GSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 829 ~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.. +-.+ +++ .|.+++++....+.+|++.+.+++++.+...
T Consensus 308 ----~~-~~~g-~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 349 (366)
T cd03822 308 ----LD-GGTG-LLVPPGDPAALAEAIRRLLADPELAQALRARAREYA 349 (366)
T ss_pred ----ee-CCCc-EEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 11 3334 444 5799999999999999999999999887754
No 101
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.61 E-value=6.1e-14 Score=154.71 Aligned_cols=206 Identities=11% Similarity=0.076 Sum_probs=144.2
Q ss_pred ecCccCCCCc-----CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC---CCCCCHHHH
Q 002729 659 TDEFVSPLRY-----AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ---LYKMDPEIF 730 (887)
Q Consensus 659 ~d~~~~p~~~-----~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~---~~k~~~~~~ 730 (887)
+|.++.|+.. ...+.+++..+|++.....+... +......+...+++++.++++..+| ..|..+.++
T Consensus 157 ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~-----~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll 231 (396)
T cd03818 157 ADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPD-----PQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFM 231 (396)
T ss_pred CCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCC-----chhhhcccccccCCCCCeEEEEECCCcccccCHHHHH
Confidence 3555555442 22345788888886643222110 0111112333445566666666665 469999999
Q ss_pred HHHHHHHhhcCCceEEEecCCh--------hhHHHHHHHHHHcCC--CCCcEEEcCCCCcHHHHHhccCCcEEecC-CCC
Q 002729 731 NTWCNILRRVPNSALWLLRFPA--------AGEMRLRAYAVAQGV--QPDQIIFTDVAMKQEHIRRSSLADLFLDT-PLC 799 (887)
Q Consensus 731 ~~~~~il~~~p~~~l~~~~~~~--------~~~~~l~~~~~~~g~--~~~r~~~~~~~~~~~~~~~~~~~d~~ld~-~~~ 799 (887)
+++.++.++.|+.+|+|+|.+. ..........++.+. +.++|+|+|.++.++...+|+.+|+++-| .|+
T Consensus 232 ~a~~~l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e 311 (396)
T cd03818 232 RALPRLLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPF 311 (396)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCccc
Confidence 9999999999999999998632 111122233334442 35899999999999999999999999998 555
Q ss_pred CCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhccc
Q 002729 800 NAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRLT 876 (887)
Q Consensus 800 ~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~ 876 (887)
+-|.+++|||+||+|||+.......+-+.. |.++ +++ .|++++.+...++.+|++.+.+++++.|+....
T Consensus 312 ~~~~~llEAmA~G~PVIas~~~g~~e~i~~------~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 312 VLSWSLLEAMACGCLVVGSDTAPVREVITD------GENG-LLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred ccchHHHHHHHCCCCEEEcCCCCchhhccc------CCce-EEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 559999999999999998776655554432 5566 554 589999999999999999999999998876543
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1e-12 Score=125.58 Aligned_cols=385 Identities=15% Similarity=0.080 Sum_probs=264.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 002729 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (887)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (887)
+.+..+|..|++++..-.+.+|++...+..+|.||+...+|..|..+|++.-...|.........++.+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (887)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (887)
+...+.....-.......-+.+.+..+++..+....++.- ..++.....+.|.+.++.|++++|.+-|+.+++...-+
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq 177 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ 177 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCC
Confidence 9887755422233455556677778888888777665532 12567788899999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC--------------------------hhHHhhHHHHHHHcCCh
Q 002729 203 PDAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN--------------------------AIAFGNLASTYYERGQA 252 (887)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~--------------------------~~~~~~la~~~~~~g~~ 252 (887)
+-.-++++.++++.+++..|+++..++++. .|. .++++..+.++++.+++
T Consensus 178 pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~ 257 (459)
T KOG4340|consen 178 PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNY 257 (459)
T ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccH
Confidence 899999999999999999999999888763 221 23445556777788888
Q ss_pred HHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002729 253 DMAILYYKQAIGCDP--RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330 (887)
Q Consensus 253 ~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 330 (887)
+.|.+.+..+-.... -++.++.+++..- ..+++.+..+-+.-.+.++|-.++.+-++-.+|++..-++-|...+.+
T Consensus 258 eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE- 335 (459)
T KOG4340|consen 258 EAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE- 335 (459)
T ss_pred HHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh-
Confidence 888776665542111 1233444444332 235566677777777777887777888888888887777777665533
Q ss_pred HhccCCCc-----hhHhhHHHHH-HHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHH--c---CCHHHHHHHHHHH
Q 002729 331 LAVTTGLS-----APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLAADGLVNR-GNTYKE--I---GRVTDAIQDYIRA 398 (887)
Q Consensus 331 ~~~~~~~~-----~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-~~~~~~--~---g~~~~A~~~~~~a 398 (887)
+++.. ...+.+-..+ ..+-..++|.+-+...-..- ..-+..+ +.+... . ....+|++.|+.+
T Consensus 336 ---n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~ 409 (459)
T KOG4340|consen 336 ---NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDET 409 (459)
T ss_pred ---CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22211 1112222222 22345555555444332210 0000000 111111 1 1123444555555
Q ss_pred HhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 399 ITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 399 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
+++. ..+....+++|+...++..+.+.|++..+...++.
T Consensus 410 LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd 448 (459)
T KOG4340|consen 410 LEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD 448 (459)
T ss_pred HHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence 5443 23556677777888888888888877776655443
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=5.3e-12 Score=138.46 Aligned_cols=299 Identities=18% Similarity=0.180 Sum_probs=159.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
.+.+.....++...|++++|++.+++..+.-.+........|.++.++|++++|...|...++.+|++...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 34555555566666666666666665555555555555666666666666666666666666666666555555555542
Q ss_pred HcC-----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHH
Q 002729 113 RKG-----RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (887)
Q Consensus 113 ~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (887)
... +.+.-..+|++.....|....... +...+..-..+.. .
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~---------------------------------~ 129 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKE---------------------------------R 129 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHH---------------------------------H
Confidence 222 234444444444444443221111 1111111011111 1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hCCC--hhHHhhHHHHHHHc
Q 002729 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ----------------TRPN--AIAFGNLASTYYER 249 (887)
Q Consensus 188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~p~--~~~~~~la~~~~~~ 249 (887)
+..++...+.. .-|.+...+-.+|....+..-...++..... ..|. ..+++.++..|...
T Consensus 130 ~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 130 LDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 12222222221 2233333333333322222212222222111 1122 23456667777777
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHH
Q 002729 250 GQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKA 329 (887)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 329 (887)
|++++|+++++++++..|..++.|...|.++...|++.+|.+.++.+.+++..|-.+....+..+.+.|+.++|.+.+..
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HHhccCCCc-------hhH--hhHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 330 TLAVTTGLS-------APF--NNLAVIYKQQGNYADAISCYNEVLRI 367 (887)
Q Consensus 330 ~~~~~~~~~-------~~~--~~la~~~~~~g~~~~A~~~~~~al~~ 367 (887)
....+.+.. -.| ...|.+|.+.|++..|++.|..+.+.
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 554432110 112 23466667777777777766666554
No 104
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.5e-11 Score=123.54 Aligned_cols=292 Identities=15% Similarity=0.085 Sum_probs=197.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCh
Q 002729 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN-FADAWSNLASAYMRKGRL 117 (887)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 117 (887)
-|..-+..|+|.+|.+...+.-+..+....++..-+.+..+.|+++.|-.++.++-+..++ ........+......|++
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 3444455566666666666665555555555556666666666666666666666665332 234555666666666666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---ChH-----HHHHHHHHHHHHcCCHHHHH
Q 002729 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP---TFA-----IAWSNLAGLFMESGDLNRAL 189 (887)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~-----~~~~~la~~~~~~g~~~~A~ 189 (887)
+.|.....++++..|.++.+......+|...|++.+...++.++.+..- ... .++..+-+-....+..+.-.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 6666666666666666666666666666666666666666665554321 111 12222222222223333333
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 002729 190 QYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRF 269 (887)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 269 (887)
..++..-..-..++.+...++.-+..+|+.++|.+..+++++..-+..... -.-....++...-++..++.++..|++
T Consensus 250 ~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 250 TWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--LIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH--HHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 455555445556678888888888999999999999999988766655221 122345678888888899999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002729 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV 333 (887)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 333 (887)
+..+..+|..+.+.+.+.+|.++|+.+++..|+ ...+..++.++.+.|+..+|.+.+++++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999998887665 566788899999999999999999988754
No 105
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.58 E-value=1e-13 Score=152.27 Aligned_cols=322 Identities=13% Similarity=0.072 Sum_probs=197.4
Q ss_pred eeeeecCCCCCCh--hHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHH-------hh---cCceEECCCCCHHHHH
Q 002729 538 RVGYVSSDFGNHP--LSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQ-------SE---AEHFVDVSAMSSDMIA 605 (887)
Q Consensus 538 riGyvs~d~~~h~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~ 605 (887)
||-+|++.|.... ....+..+.+.+.+.+++|++++.............. .. ...+............
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDPLLVALNGVPVKLFSINVAYGLNLARYLFPPSLLAW 80 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCccchhhccCceeeecccchhhhhhhhhhccChhHHHH
Confidence 5777787774211 1245556666777778899888765443221111000 00 0000000111123344
Q ss_pred HHHHhCCCeEEEecCCcCCCCch--hhhhcCCCceEEeccccCCCCC-----C--------------CcccEEEecCccC
Q 002729 606 KLINEDKIQILINLNGYTKGARN--EIFAMQPAPIQVSYMGFPGTTG-----A--------------SYIDYLVTDEFVS 664 (887)
Q Consensus 606 ~~i~~~~~dil~~~~~~~~~~~~--~~~~~r~apvq~~~~g~~~t~g-----~--------------~~~d~~~~d~~~~ 664 (887)
......++||++-.+..+..... .+....-.|+.++.-|...... . ...|.+++.....
T Consensus 81 ~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~ 160 (375)
T cd03821 81 LRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATSEQE 160 (375)
T ss_pred HHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECCHHH
Confidence 45566789998643322111111 1111234677666544322211 1 1123333221000
Q ss_pred C-CCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcC
Q 002729 665 P-LRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP 741 (887)
Q Consensus 665 p-~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p 741 (887)
- ......+.+++..+|++.....+.. ......|..++.+.+.+++++++++ .|..+.++++|.++.++.|
T Consensus 161 ~~~~~~~~~~~~~~vi~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~ 233 (375)
T cd03821 161 AAEIRRLGLKAPIAVIPNGVDIPPFAA-------LPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFP 233 (375)
T ss_pred HHHHHhhCCcccEEEcCCCcChhccCc-------chhhhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcC
Confidence 0 0012234567777887644322211 0001125667777788888888876 5999999999999998899
Q ss_pred CceEEEecCChhh-HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeec
Q 002729 742 NSALWLLRFPAAG-EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP 819 (887)
Q Consensus 742 ~~~l~~~~~~~~~-~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~ 819 (887)
+.+|+++|.++.. ...+...+...|+ .++|.|.|.++.++....|..+|+++-|..++| |++.+|||++|+|||+..
T Consensus 234 ~~~l~i~G~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~ 312 (375)
T cd03821 234 DWHLVIAGPDEGGYRAELKQIAAALGL-EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD 312 (375)
T ss_pred CeEEEEECCCCcchHHHHHHHHHhcCc-cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC
Confidence 9999999975443 3344555588898 589999999999999999999999999977666 999999999999999987
Q ss_pred ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 820 LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 820 g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
...+.+-+.. + .+.++..+.+++++...++..|++.++.++++.++..
T Consensus 313 ~~~~~~~~~~------~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 360 (375)
T cd03821 313 KVPWQELIEY------G-CGWVVDDDVDALAAALRRALELPQRLKAMGENGRALV 360 (375)
T ss_pred CCCHHHHhhc------C-ceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 7666654432 2 2214556679999999999999999999998887764
No 106
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=2.3e-11 Score=122.23 Aligned_cols=294 Identities=15% Similarity=0.067 Sum_probs=233.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q 002729 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNP-LLVDAHSNLGNLMKAQ 148 (887)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~ 148 (887)
...-|..-...|+|.+|.+...+.-+..+.....+..-+.+..+.|+.+.|-.++.++-+..+ +........+.++...
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 344455567789999999999998888888777888888999999999999999999988843 3456788899999999
Q ss_pred CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--------HHHHHHHHHHHcCChH
Q 002729 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD--------AYLNLGNVYKALGMPQ 220 (887)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--------~~~~l~~~~~~~g~~~ 220 (887)
|+++.|.....++++..|.++.+......+|...|++.+...++.++-+..--+.+ ++..+.+-....+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999998875433221 2222222222222222
Q ss_pred HHHHHHHHHHhhCC-ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 221 EAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (887)
Q Consensus 221 ~A~~~~~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (887)
.-...++.....-. ++.....++.-+.+.|+.++|.+..+++++..-+.. .. .-.-...-++...=++..++.++.
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~--~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC--RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH--HHHhhcCCCCchHHHHHHHHHHHh
Confidence 22224443333222 267777888999999999999999999997654433 11 122234668889999999999999
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (887)
Q Consensus 300 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (887)
.|+++..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.+.|+..+|.+.+++++..
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765 456889999999999999999999999854
No 107
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.58 E-value=3.8e-14 Score=155.31 Aligned_cols=320 Identities=13% Similarity=0.153 Sum_probs=209.3
Q ss_pred eeeeecCCCCCC--hhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCc---eEE-----CCCCCHHHHHHH
Q 002729 538 RVGYVSSDFGNH--PLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH---FVD-----VSAMSSDMIAKL 607 (887)
Q Consensus 538 riGyvs~d~~~h--~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~ 607 (887)
||.+++..+..+ -....+..+.+.+.+.+++|.++.................... +.. ........+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 577888777655 2335777788888877899998887654432211100000000 000 001123556778
Q ss_pred HHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCC------------------CCcccEEEecCccCCCCcC
Q 002729 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------------ASYIDYLVTDEFVSPLRYA 669 (887)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g------------------~~~~d~~~~d~~~~p~~~~ 669 (887)
+...++||++-...+...........+..|+.++..+...... +...|.+++-.-..-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999998777776544332333455777766554433221 1234555542211111122
Q ss_pred CCCc---cceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCce
Q 002729 670 HIYS---EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA 744 (887)
Q Consensus 670 ~~~~---e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~ 744 (887)
..+. .++..+|+......+. +.....+...+.+.+.++++.+++. .|..+.++++|..+....|+.+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~ 232 (374)
T cd03801 161 ELGGVPPEKITVIPNGVDTERFR--------PAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVR 232 (374)
T ss_pred hcCCCCCCcEEEecCcccccccC--------ccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeE
Confidence 2222 4677777654322111 0001112333445566777777765 6999999999999999889999
Q ss_pred EEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccch
Q 002729 745 LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM 823 (887)
Q Consensus 745 l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~ 823 (887)
|++.|.++. ...+.+.+...+. .++|.|.|.++.++....+..+|+++.|..++| |++.+|||++|+|||+.....+
T Consensus 233 l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~ 310 (374)
T cd03801 233 LVIVGDGPL-REELEALAAELGL-GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGI 310 (374)
T ss_pred EEEEeCcHH-HHHHHHHHHHhCC-CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCCh
Confidence 999996655 6677777778888 689999999999999999999999999977666 9999999999999999887766
Q ss_pred hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 824 ~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.+.+.. |-.+ ++. .|.+++++...++..|++.+.++++..++..
T Consensus 311 ~~~~~~------~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 356 (374)
T cd03801 311 PEVVED------GETG-LLVPPGDPEALAEAILRLLDDPELRRRLGEAARERV 356 (374)
T ss_pred hHHhcC------Ccce-EEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 664432 3334 444 3469999999999999999999998887443
No 108
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.58 E-value=1.3e-13 Score=149.67 Aligned_cols=305 Identities=14% Similarity=0.166 Sum_probs=192.3
Q ss_pred eeeeecCCCCC-ChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEEC----------CCCCHHHHHH
Q 002729 538 RVGYVSSDFGN-HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV----------SAMSSDMIAK 606 (887)
Q Consensus 538 riGyvs~d~~~-h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 606 (887)
||.++++.+.. .=+...+..+.+.+.+.+++|.+++..+..... .. +...+ .+..+ .......+.+
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPF-YE-LDPKI-KVIDLGDKRDSKLLARFKKLRRLRK 77 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cc-cCCcc-ceeecccccccchhccccchHHHHH
Confidence 68888888863 223356666777777678899888766543110 00 11111 11111 2223577899
Q ss_pred HHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCC------------CCcccEEEecCccCCCCcCCCCcc
Q 002729 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTG------------ASYIDYLVTDEFVSPLRYAHIYSE 674 (887)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g------------~~~~d~~~~d~~~~p~~~~~~~~e 674 (887)
.|+..++|+++-..++ ...-+..+..+..|+.+..-+.+.... +...|.+++..-..-.........
T Consensus 78 ~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~ 156 (348)
T cd03820 78 LLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKKFNK 156 (348)
T ss_pred hhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhccCCC
Confidence 9999999999876655 111112222222255444333222221 334566555221110112233445
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (887)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (887)
++..+|++....... + . .+.+.++++++++ ..|..+.++++|.++.+..|+.+|+++|.++
T Consensus 157 ~~~vi~~~~~~~~~~--------~----~-----~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~ 219 (348)
T cd03820 157 NVVVIPNPLPFPPEE--------P----S-----SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGP 219 (348)
T ss_pred CeEEecCCcChhhcc--------c----c-----CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 666676643221100 0 0 1233445555554 4689999999999999889999999999776
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHH
Q 002729 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (887)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~ 831 (887)
. ...+.+.....|+ .++|.|.|. .++....|..+|+++-|..+.| |++++|||++|+|||+.........
T Consensus 220 ~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----- 290 (348)
T cd03820 220 E-REALEALIKELGL-EDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----- 290 (348)
T ss_pred C-HHHHHHHHHHcCC-CCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchHh-----
Confidence 5 6677778888898 688999997 5778888999999999977777 9999999999999998654332221
Q ss_pred HHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 832 CLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 832 l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
+..-|..+ ++. .|.+++++...++..|++.++++++..+..
T Consensus 291 ~~~~~~~g-~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 291 IIEDGVNG-LLVPNGDVEALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred hhccCcce-EEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 11113344 454 467999999999999999999999887554
No 109
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.58 E-value=3.8e-14 Score=155.73 Aligned_cols=322 Identities=15% Similarity=0.163 Sum_probs=198.7
Q ss_pred eeeeecCCCCCChh--HHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCc-----eE--ECCCCCHHHHHHHH
Q 002729 538 RVGYVSSDFGNHPL--SHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEH-----FV--DVSAMSSDMIAKLI 608 (887)
Q Consensus 538 riGyvs~d~~~h~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~i 608 (887)
||.+++..|..+.. +.....+.+.+.+.+.+|++++................... +. .........+.+.+
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEEEVVVVRPFRVPTFKYPDFRLPLPIPRALIIIL 80 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCcccccccccccccccchhhhhhccccHHHHHHHHH
Confidence 57777777644332 24556666776666788888876543221101000000000 00 00011134455568
Q ss_pred HhCCCeEEEecCCcCCCCchh-hhhcCCCceEEeccccCC----------------------CCCCCcccEEEecCccCC
Q 002729 609 NEDKIQILINLNGYTKGARNE-IFAMQPAPIQVSYMGFPG----------------------TTGASYIDYLVTDEFVSP 665 (887)
Q Consensus 609 ~~~~~dil~~~~~~~~~~~~~-~~~~r~apvq~~~~g~~~----------------------t~g~~~~d~~~~d~~~~p 665 (887)
...++||++-.+..+.+.... +......|+..++-..+. ...+...|++++..-...
T Consensus 81 ~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 160 (374)
T cd03817 81 KELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSEKIA 160 (374)
T ss_pred hhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccHHHH
Confidence 899999997655433322111 222345676654321110 001123455444111000
Q ss_pred CCcCC-CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC
Q 002729 666 LRYAH-IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN 742 (887)
Q Consensus 666 ~~~~~-~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~ 742 (887)
..... ....++..+|++.-..... +......|..++++++.++++++++. .|..+.++++|.++....|+
T Consensus 161 ~~~~~~~~~~~~~vi~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~ 233 (374)
T cd03817 161 DLLREYGVKRPIEVIPTGIDLDRFE-------PVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPD 233 (374)
T ss_pred HHHHhcCCCCceEEcCCccchhccC-------ccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCC
Confidence 00011 1234466677654321111 01111224556677777777777765 58899999999999888899
Q ss_pred ceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeeccc
Q 002729 743 SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLE 821 (887)
Q Consensus 743 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~ 821 (887)
.++.+.|.++. ...+++.+...++ .++|.|.|.++.++....|+.+|+++.|....| |++++|||+||+|||+....
T Consensus 234 ~~l~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~ 311 (374)
T cd03817 234 VKLVIVGDGPE-REELEELARELGL-ADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP 311 (374)
T ss_pred eEEEEEeCCch-HHHHHHHHHHcCC-CCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC
Confidence 99999998765 6678888888898 589999999999999999999999999966555 99999999999999998776
Q ss_pred chhhhhHHHHHHhcCCCCccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729 822 KMATRVAGSLCLATGLGEEMIVN-SMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 822 ~~~~r~~~~~l~~~g~~~~~~~~-~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~ 875 (887)
.+.+.+.. |-.+ +++. +.+++++...++.+|++.++.+++..++...
T Consensus 312 ~~~~~i~~------~~~g-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 312 GLPDLVAD------GENG-FLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred Chhhheec------Ccee-EEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 66553321 3445 5553 3339999999999999999999888876543
No 110
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.58 E-value=1.1e-13 Score=151.87 Aligned_cols=310 Identities=14% Similarity=0.137 Sum_probs=193.2
Q ss_pred ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC--C----CHHHHHHHHHh
Q 002729 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--M----SSDMIAKLINE 610 (887)
Q Consensus 537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~i~~ 610 (887)
.+|-++.+.|..-=+-.++..+...++..++++++++....+ .+...+...--.++.+.. . ....+.+.++.
T Consensus 2 ~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 79 (374)
T TIGR03088 2 PLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS--AFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQ 79 (374)
T ss_pred ceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC--hhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHH
Confidence 467777777743222367778888888888887666543222 334444333223333321 1 13557888999
Q ss_pred CCCeEEEecCCcCCCCch---hhhhc-CCCceEE-eccccCCCC----CC----------CcccEEEecCccCCCCc-C-
Q 002729 611 DKIQILINLNGYTKGARN---EIFAM-QPAPIQV-SYMGFPGTT----GA----------SYIDYLVTDEFVSPLRY-A- 669 (887)
Q Consensus 611 ~~~dil~~~~~~~~~~~~---~~~~~-r~apvq~-~~~g~~~t~----g~----------~~~d~~~~d~~~~p~~~-~- 669 (887)
.++||++ +++... .+++. ..-|+-+ +..|++... +. +..|.+++ .+.. .
T Consensus 80 ~~~Divh-----~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----vs~~~~~ 149 (374)
T TIGR03088 80 LRPDIVH-----TRNLAALEAQLPAALAGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVA-----VSRDLED 149 (374)
T ss_pred hCCCEEE-----EcchhHHHHHHHHHhcCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEE-----eCHHHHH
Confidence 9999994 432111 11221 1223322 111211100 00 12333332 2221 1
Q ss_pred ------CCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcC
Q 002729 670 ------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVP 741 (887)
Q Consensus 670 ------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p 741 (887)
....+++..+|++.....+... .......+.....+++.+++++++++ .|..+.+++++.+++++.|
T Consensus 150 ~~~~~~~~~~~~~~vi~ngvd~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~ 224 (374)
T TIGR03088 150 WLRGPVKVPPAKIHQIYNGVDTERFHPS-----RGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLP 224 (374)
T ss_pred HHHHhcCCChhhEEEeccCccccccCCC-----ccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCc
Confidence 1123456667765432111100 00011112233346677888888877 4899999999999998876
Q ss_pred ----CceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCcee
Q 002729 742 ----NSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI 816 (887)
Q Consensus 742 ----~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvv 816 (887)
+.+|+++|.++. .+.+++.+.+.|+ .++|.|.|. ..+...+|+.+|+++-|+.++| |++++|||+||+|||
T Consensus 225 ~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv 300 (374)
T TIGR03088 225 EGAERLRLVIVGDGPA-RGACEQMVRAAGL-AHLVWLPGE--RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVI 300 (374)
T ss_pred ccccceEEEEecCCch-HHHHHHHHHHcCC-cceEEEcCC--cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEE
Confidence 679999998765 6788999999999 588999995 4567888999999999977777 999999999999999
Q ss_pred eecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 817 TLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 817 t~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
+-......+-+. -|..+ ++. .|.+++++....+..|++.+..++.+.|+..
T Consensus 301 ~s~~~g~~e~i~------~~~~g-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~ 353 (374)
T TIGR03088 301 ATAVGGNPELVQ------HGVTG-ALVPPGDAVALARALQPYVSDPAARRAHGAAGRARA 353 (374)
T ss_pred EcCCCCcHHHhc------CCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 865444444221 14445 444 6899999999999999999999988877654
No 111
>PLN02949 transferase, transferring glycosyl groups
Probab=99.58 E-value=3.4e-14 Score=156.29 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=126.8
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhh----cCCceEEEecCChh-----hHHHHHHHHHHcCCCCCcEEEcCCCCcHH
Q 002729 714 FIFACFNQ--LYKMDPEIFNTWCNILRR----VPNSALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (887)
Q Consensus 714 ~~~~~~~~--~~k~~~~~~~~~~~il~~----~p~~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~r~~~~~~~~~~~ 782 (887)
.+|.++++ +.|.++.++++|++++++ .|+.+|+|+|+++. ..+.|++.+++.|+ .++|.|.|..+.++
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V~f~g~v~~~e 347 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDVEFHKNVSYRD 347 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcEEEeCCCCHHH
Confidence 44555665 469999999999998764 47889999997532 12578899999999 68999999999999
Q ss_pred HHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccc-hhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-C
Q 002729 783 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-D 859 (887)
Q Consensus 783 ~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~-d 859 (887)
...+|+.+|+++.|.-++| |++.+|||++|+|||+..... ..+-+... .-|.++ +.+.|.+++.+...++.+ |
T Consensus 348 l~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~---~~g~tG-~l~~~~~~la~ai~~ll~~~ 423 (463)
T PLN02949 348 LVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE---DGQQTG-FLATTVEEYADAILEVLRMR 423 (463)
T ss_pred HHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC---CCCccc-ccCCCHHHHHHHHHHHHhCC
Confidence 9999999999999976666 999999999999999865221 11111100 014556 778899999999999998 6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCcCCcc
Q 002729 860 RQKLQALTNKLKSVRLTCPLFDTARWV 886 (887)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~l~d~~~~~ 886 (887)
++.+++|+++.|++.. -|+..+|+
T Consensus 424 ~~~r~~m~~~ar~~~~---~FS~e~~~ 447 (463)
T PLN02949 424 ETERLEIAAAARKRAN---RFSEQRFN 447 (463)
T ss_pred HHHHHHHHHHHHHHHH---HcCHHHHH
Confidence 7888899998887642 26665553
No 112
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.57 E-value=3.1e-14 Score=153.64 Aligned_cols=302 Identities=9% Similarity=-0.037 Sum_probs=180.1
Q ss_pred ccceeeeecCCCCCChhH--HhhhHHhhcCCCCC-cEEEEEecCCCC-------------------ChHHHHHHHhhcCc
Q 002729 535 RRLRVGYVSSDFGNHPLS--HLMGSVFGMHNKEN-VEVFCYALSPND-------------------GTEWRQRTQSEAEH 592 (887)
Q Consensus 535 ~~lriGyvs~d~~~h~~~--~~~~~~~~~~~~~~-~e~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 592 (887)
.++||++++.-|--..-| .....+...+-+.+ .||+++...... +...++.....+.+
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 468999999877444322 23333444555666 589888764211 01111111111111
Q ss_pred e--------EE------CCCCCHHHHHHHHHhCCCeEEEecCCcCCCCc--hhhhhcCCCceEEeccccC-CC---CCC-
Q 002729 593 F--------VD------VSAMSSDMIAKLINEDKIQILINLNGYTKGAR--NEIFAMQPAPIQVSYMGFP-GT---TGA- 651 (887)
Q Consensus 593 ~--------~~------~~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~--~~~~~~r~apvq~~~~g~~-~t---~g~- 651 (887)
+ .. ...+...++.+.|++.++||++--+-.+-|.- ..-.+.|.-++..++-..+ .. .+.
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~vV~tyHT~y~~Y~~~~~~g 162 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRLVIGIVHTNYLEYVKREKNG 162 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCcEEEEECCChHHHHHHhccc
Confidence 1 11 11224567999999999999964332222221 1112333334333432211 11 110
Q ss_pred --Cc-----ccEE----EecCccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcE--EEEe
Q 002729 652 --SY-----IDYL----VTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKF--IFAC 718 (887)
Q Consensus 652 --~~-----~d~~----~~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~--~~~~ 718 (887)
.. +..+ -+|.++.|+.....+.+..+..+++... ....+.....+..++ +++.+ ++++
T Consensus 163 ~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l~~~~i~~v~GVd~--------~~f~~~~~~~~~~~~-~~~~~~~~~l~ 233 (462)
T PLN02846 163 RVKAFLLKYINSWVVDIYCHKVIRLSAATQDYPRSIICNVHGVNP--------KFLEIGKLKLEQQKN-GEQAFTKGAYY 233 (462)
T ss_pred hHHHHHHHHHHHHHHHHhcCEEEccCHHHHHHhhCEEecCceech--------hhcCCCcccHhhhcC-CCCCcceEEEE
Confidence 10 1111 2577777876544344555554432211 111111111222222 34433 4566
Q ss_pred cCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecC
Q 002729 719 FNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDT 796 (887)
Q Consensus 719 ~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~ 796 (887)
.+|+ .|+.+.+++++.++.+..|+.+|+|+|+||. ++.|++.+.+.|++ .++ |.|....++ .|+.+|||+-|
T Consensus 234 vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~-~~~L~~~a~~l~l~-~~v-f~G~~~~~~---~~~~~DvFv~p 307 (462)
T PLN02846 234 IGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGED-SDEVKAAAEKLELD-VRV-YPGRDHADP---LFHDYKVFLNP 307 (462)
T ss_pred EecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCcc-HHHHHHHHHhcCCc-EEE-ECCCCCHHH---HHHhCCEEEEC
Confidence 6776 5999999999999988899999999999988 88999999999984 444 888765554 55667999999
Q ss_pred CCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002729 797 PLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (887)
Q Consensus 797 ~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d 859 (887)
+.+.| |++++|||+||+|||+...+. . .++.. |-+. +..+|.+++++.+..+..+
T Consensus 308 S~~Et~g~v~lEAmA~G~PVVa~~~~~-~-----~~v~~-~~ng-~~~~~~~~~a~ai~~~l~~ 363 (462)
T PLN02846 308 STTDVVCTTTAEALAMGKIVVCANHPS-N-----EFFKQ-FPNC-RTYDDGKGFVRATLKALAE 363 (462)
T ss_pred CCcccchHHHHHHHHcCCcEEEecCCC-c-----ceeec-CCce-EecCCHHHHHHHHHHHHcc
Confidence 88888 999999999999999875442 1 23333 5555 6778999999999988774
No 113
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.56 E-value=1.2e-13 Score=150.28 Aligned_cols=315 Identities=13% Similarity=0.096 Sum_probs=198.6
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHH--H--HhhcC--ceEECCCCCHHHHHHHHHhC
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--T--QSEAE--HFVDVSAMSSDMIAKLINED 611 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~--~~~~~--~~~~~~~~~~~~~~~~i~~~ 611 (887)
||.+++..+...-+...+..+.+.+...+++|.++...+......... . ..... ............+.+.++..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 678888888644445677778888877789999888665433210100 0 00000 01111112356789999999
Q ss_pred CCeEEEecCCcCCCCchhhhhcC-CCceEEeccccCCCCCC-------------CcccEEEecCccCCCCcCCCC---cc
Q 002729 612 KIQILINLNGYTKGARNEIFAMQ-PAPIQVSYMGFPGTTGA-------------SYIDYLVTDEFVSPLRYAHIY---SE 674 (887)
Q Consensus 612 ~~dil~~~~~~~~~~~~~~~~~r-~apvq~~~~g~~~t~g~-------------~~~d~~~~d~~~~p~~~~~~~---~e 674 (887)
++||++-... ....-...+..+ -.|+.++.-+.+..... ...|.+++-.-..-......+ .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999987665 222222222221 24665553333222111 334444441111111112222 36
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (887)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (887)
++..+|++....... +.... +..++.+.+.++|++++++ .|..+.++++|..+....|+.+|+++|.++
T Consensus 160 ~~~vi~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~ 230 (353)
T cd03811 160 KIEVIYNPIDIEEIR--------ALAEE-PLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDGP 230 (353)
T ss_pred ccEEecCCcChhhcC--------cccch-hhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCCc
Confidence 667777654322111 10000 0024556677888888876 589999999999998888999999999776
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHH
Q 002729 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSL 831 (887)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~ 831 (887)
. ...+.+.....|+ .++|.|.|..+ +....+..+|+++.|..+.| |++++|||++|+|||+.......+.+..
T Consensus 231 ~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~-- 304 (353)
T cd03811 231 L-REELEALAKELGL-ADRVHFLGFQS--NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPREILED-- 304 (353)
T ss_pred c-HHHHHHHHHhcCC-CccEEEecccC--CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhcC--
Confidence 5 6677788888998 58999999854 45678999999999987777 9999999999999998776655554332
Q ss_pred HHhcCCCCcccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 832 CLATGLGEEMIV--NSMKEY---EERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 832 l~~~g~~~~~~~--~~~~~y---~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
|-.+ ++. .+.+++ +.....+..|++.+.+++...++.
T Consensus 305 ----~~~g-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (353)
T cd03811 305 ----GENG-LLVPVGDEAALAAAALALLDLLLDPELRERLAAAARER 346 (353)
T ss_pred ----CCce-EEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 4445 554 456666 677888888999999888855544
No 114
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.55 E-value=1.3e-13 Score=151.07 Aligned_cols=251 Identities=15% Similarity=0.159 Sum_probs=165.0
Q ss_pred HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCccc--------------EEEecCccCCC
Q 002729 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYID--------------YLVTDEFVSPL 666 (887)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d--------------~~~~d~~~~p~ 666 (887)
...+...+++.++||++.-.+.+...-..+......|+.+++-|+..+......- +.-+|.++.+.
T Consensus 71 ~~~~~~~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s 150 (367)
T cd05844 71 APQLRRLLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVS 150 (367)
T ss_pred ccHHHHHHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECC
Confidence 3455667899999999754433211111222234578888766543332211100 00123333333
Q ss_pred CcC-------CCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 002729 667 RYA-------HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRR 739 (887)
Q Consensus 667 ~~~-------~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~ 739 (887)
... +...+++..+|++.....+ .+.... .....++|.+-....|..+.+++++..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~i~vi~~g~d~~~~--------~~~~~~------~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~ 216 (367)
T cd05844 151 QFIRDRLLALGFPPEKVHVHPIGVDTAKF--------TPATPA------RRPPRILFVGRFVEKKGPLLLLEAFARLARR 216 (367)
T ss_pred HHHHHHHHHcCCCHHHeEEecCCCCHHhc--------CCCCCC------CCCcEEEEEEeeccccChHHHHHHHHHHHHh
Confidence 221 1224566666654321100 010000 1112344444445679999999999999999
Q ss_pred cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCC-------CCCchhHHHHHHhC
Q 002729 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL-------CNAHTTGTDILWAG 812 (887)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~-------~~g~~t~~eal~~g 812 (887)
.|+.+|+++|.++. .+.+++.+.+.|+ .++|.|.|.++.++...+|..+|+++-|+. .+.|++.+|||++|
T Consensus 217 ~~~~~l~ivG~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G 294 (367)
T cd05844 217 VPEVRLVIIGDGPL-LAALEALARALGL-GGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASG 294 (367)
T ss_pred CCCeEEEEEeCchH-HHHHHHHHHHcCC-CCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcC
Confidence 99999999998765 5678888899998 589999999999999999999999999864 23499999999999
Q ss_pred CceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 813 LPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 813 vPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
+|||+-......+-+.. |-.+ ++. .|.+++++...++..|++.+.+++.+.++..
T Consensus 295 ~PvI~s~~~~~~e~i~~------~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 351 (367)
T cd05844 295 VPVVATRHGGIPEAVED------GETG-LLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRV 351 (367)
T ss_pred CCEEEeCCCCchhheec------CCee-EEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99998776655543321 3334 444 5899999999999999999999988877654
No 115
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.55 E-value=2e-13 Score=149.87 Aligned_cols=308 Identities=16% Similarity=0.182 Sum_probs=192.1
Q ss_pred ceeeeecC-CCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC--------C---CHHHH
Q 002729 537 LRVGYVSS-DFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--------M---SSDMI 604 (887)
Q Consensus 537 lriGyvs~-d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~ 604 (887)
+||.+++. ..+. +...+..+.+.+.+.++||.+++....... .........+...+.. . ....+
T Consensus 1 mki~~~~~p~~gG--~~~~~~~la~~L~~~G~~v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 76 (371)
T cd04962 1 MKIGIVCYPTYGG--SGVVATELGKALARRGHEVHFITSSRPFRL--DEYSPNIFFHEVEVPQYPLFQYPPYDLALASKI 76 (371)
T ss_pred CceeEEEEeCCCC--ccchHHHHHHHHHhcCCceEEEecCCCcch--hhhccCeEEEEecccccchhhcchhHHHHHHHH
Confidence 35666652 1111 124566667777777888888875432110 0000000000011110 0 12566
Q ss_pred HHHHHhCCCeEEEecCCcCCCCchhhhhc-----CCCceEEeccccCCC-CC------------CCcccEEEecCccCCC
Q 002729 605 AKLINEDKIQILINLNGYTKGARNEIFAM-----QPAPIQVSYMGFPGT-TG------------ASYIDYLVTDEFVSPL 666 (887)
Q Consensus 605 ~~~i~~~~~dil~~~~~~~~~~~~~~~~~-----r~apvq~~~~g~~~t-~g------------~~~~d~~~~d~~~~p~ 666 (887)
.+.|+..++||++-...... ....+++. +..|+.++..|.... .+ +...|.+++ ..
T Consensus 77 ~~~i~~~~~divh~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~-----~s 150 (371)
T cd04962 77 AEVAKRYKLDLLHVHYAVPH-AVAAYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTA-----VS 150 (371)
T ss_pred HHHHhcCCccEEeecccCCc-cHHHHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEE-----cC
Confidence 77888999999963221110 11122221 145776665443211 11 122344443 22
Q ss_pred Cc-----CCC--CccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002729 667 RY-----AHI--YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL 737 (887)
Q Consensus 667 ~~-----~~~--~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il 737 (887)
.. ... ..+++..+|+......+. +......|..++++++.+++++++++ .|..+.++++|.++.
T Consensus 151 ~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~-------~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~ 223 (371)
T cd04962 151 ESLRQETYELFDITKEIEVIPNFVDEDRFR-------PKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVR 223 (371)
T ss_pred HHHHHHHHHhcCCcCCEEEecCCcCHhhcC-------CCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHHHH
Confidence 21 111 245677777654321111 11112345678888888888888886 599999999999886
Q ss_pred hhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCcee
Q 002729 738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI 816 (887)
Q Consensus 738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvv 816 (887)
++ ++.+|+++|.++. ...+++.+.+.|+ .++|.|.|..+ +...+|..+|+++-|..++| |++++|||++|+|||
T Consensus 224 ~~-~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~~~--~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI 298 (371)
T cd04962 224 KE-VPARLLLVGDGPE-RSPAERLARELGL-QDDVLFLGKQD--HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVV 298 (371)
T ss_pred hc-CCceEEEEcCCcC-HHHHHHHHHHcCC-CceEEEecCcc--cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEE
Confidence 65 5589999998765 6678888899998 58899999654 56777899999999977777 999999999999999
Q ss_pred eecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 817 TLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 817 t~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
+......++-+.. |..+ +++ .|.+++++....+..|++.+..++++.++.
T Consensus 299 ~s~~~~~~e~i~~------~~~G-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 299 ASNAGGIPEVVKH------GETG-FLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred EeCCCCchhhhcC------CCce-EEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8766555543221 4455 555 489999999999999999999999988876
No 116
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.55 E-value=1.8e-13 Score=153.80 Aligned_cols=320 Identities=11% Similarity=0.047 Sum_probs=190.9
Q ss_pred CcccceeeeecC-CCCCChhH--HhhhHHhhcCCCCCcEEEEEecCCCCChHHHH-HH---HhhcCceE---ECCCCCHH
Q 002729 533 GLRRLRVGYVSS-DFGNHPLS--HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ-RT---QSEAEHFV---DVSAMSSD 602 (887)
Q Consensus 533 ~~~~lriGyvs~-d~~~h~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~~---~~~~~~~~---~~~~~~~~ 602 (887)
..+++||..+.. .+..|.-| ..+..+.+.+.+.++||+++...+........ .+ ......+. ........
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 134 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALSP 134 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCCH
Confidence 367899997753 33344433 46667788888888999988865432111100 00 00000000 00000123
Q ss_pred HHHHHHHhCCCeEEEecCCcCCCC-chhhhhcCCCceEEeccccCCCC----CCCc----c----c--EEEecCccCCCC
Q 002729 603 MIAKLINEDKIQILINLNGYTKGA-RNEIFAMQPAPIQVSYMGFPGTT----GASY----I----D--YLVTDEFVSPLR 667 (887)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~-~~~~~~~r~apvq~~~~g~~~t~----g~~~----~----d--~~~~d~~~~p~~ 667 (887)
.+.+.|++.++||++--+.+.... ...+......|+.+++-++.... +... + . +..+|.++.++.
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S~ 214 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTSP 214 (465)
T ss_pred HHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECCH
Confidence 678899999999986432211110 01112234578888765442111 0000 0 0 012344444433
Q ss_pred c-----CCCC---ccceeecCCccccCCCccccccCCCCCCCCCCCCCC-CCCCcEEEEecCCC--CCCCHHHHHHHHHH
Q 002729 668 Y-----AHIY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYG-LPEDKFIFACFNQL--YKMDPEIFNTWCNI 736 (887)
Q Consensus 668 ~-----~~~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~-l~~~~~~~~~~~~~--~k~~~~~~~~~~~i 736 (887)
. ...+ .+++..+|++.....+.+. ......|..++ .+++.+++++++++ .|..+.+++ +
T Consensus 215 ~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~------~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~----a 284 (465)
T PLN02871 215 ALGKELEAAGVTAANRIRVWNKGVDSESFHPR------FRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKR----V 284 (465)
T ss_pred HHHHHHHHcCCCCcCeEEEeCCccCccccCCc------cccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHH----H
Confidence 2 1112 4567777775443222110 00111222332 23456777777876 476655554 4
Q ss_pred HhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCce
Q 002729 737 LRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPM 815 (887)
Q Consensus 737 l~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPv 815 (887)
++..|+.+|+|+|.++. ++.+++.+. ..+|+|+|.++.++...+|..+|+++-|..++| |.+++|||+||+||
T Consensus 285 ~~~~~~~~l~ivG~G~~-~~~l~~~~~-----~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PV 358 (465)
T PLN02871 285 MERLPGARLAFVGDGPY-REELEKMFA-----GTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPV 358 (465)
T ss_pred HHhCCCcEEEEEeCChH-HHHHHHHhc-----cCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCE
Confidence 55678999999998876 566666654 246999999999999999999999999977777 99999999999999
Q ss_pred eeecccchhhhhHHHHHHh--cCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 816 ITLPLEKMATRVAGSLCLA--TGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 816 vt~~g~~~~~r~~~~~l~~--~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
|+-......+ ++.. .|-.+ ++. .|.+++.+...++..|++.++++++..++..
T Consensus 359 I~s~~gg~~e-----iv~~~~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 359 VAARAGGIPD-----IIPPDQEGKTG-FLYTPGDVDDCVEKLETLLADPELRERMGAAAREEV 415 (465)
T ss_pred EEcCCCCcHh-----hhhcCCCCCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9765444333 2222 25556 554 5899999999999999999999999888754
No 117
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.54 E-value=7.2e-14 Score=152.50 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=197.4
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcC--c--eEECCCC-CHHHHHHHHHhCC
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--H--FVDVSAM-SSDMIAKLINEDK 612 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~~~~~~~i~~~~ 612 (887)
||-||+..|..- ...++..+++.+.+.+++|.+++..+............... . ...+..+ ....+.+.+++.+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 578888877332 34566777777778889998888665432111000000000 0 0001111 1345667778899
Q ss_pred CeEEEecCCcCCCCchhhhhcC--CCceEEeccccCCCCC---------CCcccEEEecCccCCCCcC---CCCccceee
Q 002729 613 IQILINLNGYTKGARNEIFAMQ--PAPIQVSYMGFPGTTG---------ASYIDYLVTDEFVSPLRYA---HIYSEKLVH 678 (887)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~~~r--~apvq~~~~g~~~t~g---------~~~~d~~~~d~~~~p~~~~---~~~~e~~~~ 678 (887)
+||++--.++... ....+..+ ..|+.++..|+..... +...|.+++..-..-.... ....+++..
T Consensus 80 ~Dii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTTPA-TVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCchH-HHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 9999754443211 12222222 2466665554432211 2335555542211111111 134566777
Q ss_pred cCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729 679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM 756 (887)
Q Consensus 679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 756 (887)
+|++....... +.. ...+.+.+.++++++ ..|..+.+++++.++....|+.++.++|.++. ..
T Consensus 159 i~~~~d~~~~~--------~~~------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~~~-~~ 223 (355)
T cd03799 159 VHCGVDLERFP--------PRP------PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDGPL-RD 223 (355)
T ss_pred EeCCcCHHHcC--------Ccc------ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECCcc-HH
Confidence 77653221111 100 112233455555555 46999999999999888889999999998766 66
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCC------CC-chhHHHHHHhCCceeeecccchhhhhHH
Q 002729 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC------NA-HTTGTDILWAGLPMITLPLEKMATRVAG 829 (887)
Q Consensus 757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~------~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~ 829 (887)
.+.+.+.+.++ .++|.|.|.++.++....|..+|++|-|+.+ .| |++++|||++|+|||+.......+.+.
T Consensus 224 ~~~~~~~~~~~-~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~- 301 (355)
T cd03799 224 ELEALIAELGL-EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVE- 301 (355)
T ss_pred HHHHHHHHcCC-CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhh-
Confidence 78888888888 6889999999999999999999999999776 45 999999999999999876655544322
Q ss_pred HHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729 830 SLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 830 ~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~ 875 (887)
. |-.+ ++. .|.+++++....+..|++.+..+++..++...
T Consensus 302 ----~-~~~g-~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~ 343 (355)
T cd03799 302 ----D-GETG-LLVPPGDPEALADAIERLLDDPELRREMGEAGRARVE 343 (355)
T ss_pred ----C-CCce-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 1 3344 444 48999999999999999999999988887653
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=7.4e-13 Score=134.54 Aligned_cols=185 Identities=19% Similarity=0.140 Sum_probs=123.3
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH---HHHh
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL---EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ---ALTN 309 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 309 (887)
...++.+|..+...|++++|+..+++++...|+++ .+++.+|.++...|++++|+..++++++..|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 56677777777777777777777777777776654 46677777777777777777777777777776654 5666
Q ss_pred HHHHHHHc--------CChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002729 310 LGNIYMEW--------NMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNT 381 (887)
Q Consensus 310 l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 381 (887)
+|.++... |++++|.+.|++++..+|++...+..+..+... ... .......+|..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~-------------~~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNR-------------LAGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHH-------------HHHHHHHHHHH
Confidence 67776654 556666666666666666654443222211110 000 01123466777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729 382 YKEIGRVTDAIQDYIRAITIRPTM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (887)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (887)
+...|++.+|+..++++++..|+. +.+++.+|.++.+.|++++|..+++.+....|
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888888888888876553 57888888888888888888888777766554
No 119
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.54 E-value=6.7e-13 Score=145.24 Aligned_cols=312 Identities=16% Similarity=0.158 Sum_probs=198.4
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEEC--CC-----CCHHHHHHHHHh
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDV--SA-----MSSDMIAKLINE 610 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~i~~ 610 (887)
||.+|.+.|..--+...+..+++.+.+.++++.++....... ....+...--..+.+ .. .....+.+.++.
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~--~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE--LGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRR 78 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh--hhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHh
Confidence 567777777543344677788888988888888777543321 222233211111111 11 113567888899
Q ss_pred CCCeEEEecCCcCCCCchhhhhc-CCCceEEeccccCCCCC--------------CCcccEEEecCccCCCCc-------
Q 002729 611 DKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTG--------------ASYIDYLVTDEFVSPLRY------- 668 (887)
Q Consensus 611 ~~~dil~~~~~~~~~~~~~~~~~-r~apvq~~~~g~~~t~g--------------~~~~d~~~~d~~~~p~~~------- 668 (887)
.++||++....++.......... +..|+..+..+.....+ ....|.+++ ++..
T Consensus 79 ~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~s~~~~~~~~~ 153 (365)
T cd03807 79 LRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVA-----NSAAAAEYHQA 153 (365)
T ss_pred hCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEe-----ccHHHHHHHHH
Confidence 99999986554432211111111 34566555444333221 122333222 2221
Q ss_pred CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEE
Q 002729 669 AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW 746 (887)
Q Consensus 669 ~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~ 746 (887)
.....+++..+|++.-...+.. ........|..+|++++.++++.+++. .|..+.+++++.++.+..|+.+|+
T Consensus 154 ~~~~~~~~~vi~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ 228 (365)
T cd03807 154 IGYPPKKIVVIPNGVDTERFSP-----DLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLL 228 (365)
T ss_pred cCCChhheeEeCCCcCHHhcCC-----cccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEE
Confidence 1233456666776533211110 001112245678898888888888886 588999999999999889999999
Q ss_pred EecCChhhHHHHHHHHH-HcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchh
Q 002729 747 LLRFPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMA 824 (887)
Q Consensus 747 ~~~~~~~~~~~l~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~ 824 (887)
++|.++. ...+..... ..|+ .++|.|.|.. .+...+|..+|+++-|..++| |++++|||++|+|||+.......
T Consensus 229 i~G~~~~-~~~~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~~~ 304 (365)
T cd03807 229 LVGDGPD-RANLELLALKELGL-EDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGDNA 304 (365)
T ss_pred EecCCcc-hhHHHHHHHHhcCC-CceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCChH
Confidence 9987665 444555554 7788 5889999854 467788999999999977766 99999999999999986655444
Q ss_pred hhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 825 TRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 825 ~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
+-+. . .+ ++. .|.+++++....+..|++.+..++...++..
T Consensus 305 e~~~-----~---~g-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (365)
T cd03807 305 ELVG-----D---TG-FLVPPGDPEALAEAIEALLADPALRQALGEAARERI 347 (365)
T ss_pred HHhh-----c---CC-EEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 4322 2 23 333 6899999999999999999988888877654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=1.3e-12 Score=132.89 Aligned_cols=188 Identities=19% Similarity=0.127 Sum_probs=128.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---H
Q 002729 30 PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA---ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---A 103 (887)
Q Consensus 30 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~ 103 (887)
+..+..++.+|..++..|++++|+..+++++..+|.++ .+++.+|.++...|++++|+..|+++++..|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34577888888888888888888888888888887764 56788888888888888888888888888877654 5
Q ss_pred HHHHHHHHHHc--------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHH
Q 002729 104 WSNLASAYMRK--------GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175 (887)
Q Consensus 104 ~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 175 (887)
++.+|.++... |++++|++.+++++..+|++......+..+....+ . .......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHHH
Confidence 77778777765 66777777777777777776554432222211100 0 01122355
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 176 AGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP 234 (887)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 234 (887)
+..+...|++.+|+..++++++..|+. +.++..++.++...|++++|..+++.+....|
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666777777777777777777665543 35667777777777777777776666655443
No 121
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=148.82 Aligned_cols=306 Identities=13% Similarity=0.169 Sum_probs=180.7
Q ss_pred ceeeeecCCCCC-ChhHHhhhHHhhcCCCC--CcEEEEEecCCCCChHHHHHHHhh--cC-ceEECCC--CCHHHHHHHH
Q 002729 537 LRVGYVSSDFGN-HPLSHLMGSVFGMHNKE--NVEVFCYALSPNDGTEWRQRTQSE--AE-HFVDVSA--MSSDMIAKLI 608 (887)
Q Consensus 537 lriGyvs~d~~~-h~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~--~~~~~~~~~i 608 (887)
+||.++...+.. .=+..++..+.+++.+. ++|++++.........+.+.+... .. ....... .....+.+.+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 80 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKWL 80 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHhcchhcccccchhhhhcccHHHHHHHHHH
Confidence 478888765432 12336777888888887 799988886543322222222110 00 0001000 1135677899
Q ss_pred HhCCCeEEEecCCcCCCCchhhhhcC--CCce-EEeccc--cCCCCCCCcccEEEecCccCCCCcC-------CCCccce
Q 002729 609 NEDKIQILINLNGYTKGARNEIFAMQ--PAPI-QVSYMG--FPGTTGASYIDYLVTDEFVSPLRYA-------HIYSEKL 676 (887)
Q Consensus 609 ~~~~~dil~~~~~~~~~~~~~~~~~r--~apv-q~~~~g--~~~t~g~~~~d~~~~d~~~~p~~~~-------~~~~e~~ 676 (887)
++.++||++..+... ......+.+ -.|+ .++|.. .+.........+..+|.++.++... ....+++
T Consensus 81 ~~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki 158 (359)
T PRK09922 81 KETQPDIVICIDVIS--CLYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGISAQRI 158 (359)
T ss_pred HhcCCCEEEEcCHHH--HHHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCCHHHE
Confidence 999999997543211 111111111 1233 233321 1111111111122334433333321 1123556
Q ss_pred eecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC----CCCCHHHHHHHHHHHhhcCCceEEEecCCh
Q 002729 677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL----YKMDPEIFNTWCNILRRVPNSALWLLRFPA 752 (887)
Q Consensus 677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~----~k~~~~~~~~~~~il~~~p~~~l~~~~~~~ 752 (887)
..+|++....... .+ .+. .++.+++++++++ .|....+++++.++. ++.+|+++|.++
T Consensus 159 ~vi~N~id~~~~~-------~~--~~~------~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g~ 220 (359)
T PRK09922 159 SVIYNPVEIKTII-------IP--PPE------RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDGS 220 (359)
T ss_pred EEEcCCCCHHHcc-------CC--Ccc------cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCCc
Confidence 6666644211100 00 000 1234566666664 377888888887652 478999999887
Q ss_pred hhHHHHHHHHHHcCCCCCcEEEcCCCCc--HHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeec-ccchhhhhH
Q 002729 753 AGEMRLRAYAVAQGVQPDQIIFTDVAMK--QEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMATRVA 828 (887)
Q Consensus 753 ~~~~~l~~~~~~~g~~~~r~~~~~~~~~--~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~-g~~~~~r~~ 828 (887)
. .+.+++.+.+.|+ .++|.|.|..+. ++....|..+|+++-|..+.| |.+++|||+||+|||+.. .....+
T Consensus 221 ~-~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~e--- 295 (359)
T PRK09922 221 D-FEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSGPRD--- 295 (359)
T ss_pred c-HHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCChHH---
Confidence 6 7788999999999 689999998743 566778899999999988888 999999999999999876 444443
Q ss_pred HHHHHhcCCCCccc--cCCHHHHHHHHHHHhcCHHH--HHHHHHHHH
Q 002729 829 GSLCLATGLGEEMI--VNSMKEYEERAVSLALDRQK--LQALTNKLK 871 (887)
Q Consensus 829 ~~~l~~~g~~~~~~--~~~~~~y~~~a~~l~~d~~~--~~~~~~~~~ 871 (887)
++.. |.++ ++ ..|.+++++....+.+|++. ..+.+..++
T Consensus 296 --iv~~-~~~G-~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~ 338 (359)
T PRK09922 296 --IIKP-GLNG-ELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIE 338 (359)
T ss_pred --HccC-CCce-EEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHH
Confidence 2222 5556 44 37899999999999999883 444444443
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=4.3e-12 Score=119.26 Aligned_cols=188 Identities=22% Similarity=0.162 Sum_probs=169.1
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhH
Q 002729 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNL 344 (887)
Q Consensus 265 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 344 (887)
..++....+-.+..+....|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+..++...
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 44555566777778888889999999999999888899999999999999999999999999999999999999999988
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC---C
Q 002729 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---H 421 (887)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~ 421 (887)
..+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|++++|.-++++++-+.|.++..+..++.+++-+| +
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 8888899999999999999999999999999999999999999999999999999999999999999999988877 6
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHhhh
Q 002729 422 VEAAIKSYKQALLLRPDFPEATCNLLHTLQC 452 (887)
Q Consensus 422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 452 (887)
++-|.++|.++++++|.+..+++.+..+...
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 7889999999999999888888887665544
No 123
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.51 E-value=7.2e-13 Score=147.10 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=131.2
Q ss_pred CCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhh-----HHHHHHHHHHcCCCCCcEEEcC
Q 002729 704 RSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG-----EMRLRAYAVAQGVQPDQIIFTD 776 (887)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~l~~~~~~~g~~~~r~~~~~ 776 (887)
|..++.+.+.++|+.++++ .|..+.+++++.++.+..|+.+|+++|.++.. ...++......|+ .++|.|.|
T Consensus 211 ~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g 289 (398)
T cd03800 211 RARLLRDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPG 289 (398)
T ss_pred HHhhccCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEec
Confidence 4556677777888888886 48899999999999888999999999865431 2346677788898 58999999
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHH
Q 002729 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA 853 (887)
Q Consensus 777 ~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a 853 (887)
.++..+...++..+|++|-|.-+.| |++.+|||++|+|||+-......+-+. . |-.+ +++ .|.+++++..
T Consensus 290 ~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~-----~-~~~g-~~~~~~~~~~l~~~i 362 (398)
T cd03800 290 RVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPRDIVV-----D-GVTG-LLVDPRDPEALAAAL 362 (398)
T ss_pred cCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHHHHcc-----C-CCCe-EEeCCCCHHHHHHHH
Confidence 9999999999999999999966666 999999999999999876655544332 1 3334 554 4799999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhc
Q 002729 854 VSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 854 ~~l~~d~~~~~~~~~~~~~~~ 874 (887)
..+..|++.++.++.+.++..
T Consensus 363 ~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 363 RRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999998887653
No 124
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.51 E-value=3.1e-13 Score=147.50 Aligned_cols=305 Identities=12% Similarity=0.099 Sum_probs=189.5
Q ss_pred HhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC---------CCHHHHHHHHHhCCCeEEEecCCcC
Q 002729 553 HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA---------MSSDMIAKLINEDKIQILINLNGYT 623 (887)
Q Consensus 553 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~dil~~~~~~~ 623 (887)
..+..+.+.+.+.+++|++++.+... ...+......++.+.. .....+.+.++..++||++.-+.++
T Consensus 14 ~~~~~l~~~L~~~g~~v~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dii~~~~~~~ 89 (355)
T cd03819 14 RGTLELARALVERGHRSLVASAGGRL----VAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKVDIVHARSRAP 89 (355)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCCch----HHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCCCEEEECCCch
Confidence 45566677777778999888754321 1222222112222110 1235567888999999997644332
Q ss_pred CCCchhhhhcCCCceEEeccccCCCCC-----CCcccEEEecCccCCCC---cCCCCccceeecCCccccCCCccccccC
Q 002729 624 KGARNEIFAMQPAPIQVSYMGFPGTTG-----ASYIDYLVTDEFVSPLR---YAHIYSEKLVHVPHCYFVNDYKQKNMDV 695 (887)
Q Consensus 624 ~~~~~~~~~~r~apvq~~~~g~~~t~g-----~~~~d~~~~d~~~~p~~---~~~~~~e~~~~lp~~~~~~~~~~~~~~~ 695 (887)
.............|+..++.|+....+ +...|.+++-.-..... .-....+++..+|++.-...+...
T Consensus 90 ~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~---- 165 (355)
T cd03819 90 AWSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPG---- 165 (355)
T ss_pred hHHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCcc----
Confidence 111111111234677766655543221 23345554411000000 112234677778875432211100
Q ss_pred CCCCC--CCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhh---HHHHHHHHHHcCCC
Q 002729 696 LDPNC--QPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQ 768 (887)
Q Consensus 696 ~~~~~--~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~ 768 (887)
..... ...|..++++++.++++..+++ .|..+.+++++..+....|+.+|+++|.++.. ...+.+.+.+.|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~- 244 (355)
T cd03819 166 AVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGL- 244 (355)
T ss_pred ccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCC-
Confidence 00000 0034566777888888887775 69999999999999888789999999976542 2445667788888
Q ss_pred CCcEEEcCCCCcHHHHHhccCCcEEecCC-CCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729 769 PDQIIFTDVAMKQEHIRRSSLADLFLDTP-LCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--N 844 (887)
Q Consensus 769 ~~r~~~~~~~~~~~~~~~~~~~d~~ld~~-~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~ 844 (887)
.++|.|.|. .++...++..+|+++-|+ ...| |++++|||++|+|||+.......+.+.. |..+ ++. .
T Consensus 245 ~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~------~~~g-~~~~~~ 315 (355)
T cd03819 245 QDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARETVRP------GETG-LLVPPG 315 (355)
T ss_pred cceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhC------CCce-EEeCCC
Confidence 589999998 567788899999999997 4555 9999999999999998776555554332 3345 443 6
Q ss_pred CHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcc
Q 002729 845 SMKEYEERAVSLA-LDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 845 ~~~~y~~~a~~l~-~d~~~~~~~~~~~~~~~~ 875 (887)
|.+++++....+. .|++.+.+++++.++...
T Consensus 316 ~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 316 DAEALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 8888888775444 589999999999887653
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=4.7e-13 Score=122.85 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=104.3
Q ss_pred HHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (887)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (887)
..+++++++.+|++ +..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45677777777764 556788888888888888888888888888888888899988889999999999999998888
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Q 002729 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (887)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (887)
+++.+++++|.++...|++++|+..|+++++..|+++..+.+.....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 88889999999999999999999999999998888888887665544
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.50 E-value=6.4e-12 Score=143.51 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=185.1
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHH
Q 002729 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLA 243 (887)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la 243 (887)
.+|.+..++..++..+...+++++|++.++..++..|+....++.+|.++.+.+++.++... .++..
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----------- 92 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----------- 92 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-----------
Confidence 46788888888888888888999999998888888888888888888888888887666555 44433
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHH
Q 002729 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323 (887)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 323 (887)
.....++ .+++++...+...+++..+++.+|.+|-++|+.++|...++++++.+|+++.+++++|..|... +.++|
T Consensus 93 --~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 --FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred --cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2333444 4555555555557777778999999999999999999999999999999999999999999988 99999
Q ss_pred HHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729 324 ASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (887)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (887)
++++.+++.. +...+++.++.+++.+.+..+|++.+.+..+-......-....+
T Consensus 169 ~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~------------ 222 (906)
T PRK14720 169 ITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL------------ 222 (906)
T ss_pred HHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh------------
Confidence 9999988754 66777999999999999999998877655443332222112222
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhh
Q 002729 404 TMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (887)
Q Consensus 404 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (887)
...+.-+-..|...+++++++.+++.+++.+|++..+...++.+|.
T Consensus 223 --~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 223 --VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred --HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3344555566777777778888888888888877777777777776
No 127
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.50 E-value=4.6e-13 Score=147.76 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=123.9
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhh------cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHH
Q 002729 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRR------VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (887)
Q Consensus 711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~ 782 (887)
++.+++++.+++ .|..+.+++++..+.+. .|+.+|+|+|.|+. ++.+++.+++.|++ +.+.|.|.++.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~~~~~~g~~~~~~ 307 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL-KEKYLERIKELKLK-KVTIRTPWLSAED 307 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc-HHHHHHHHHHcCCC-cEEEEcCcCCHHH
Confidence 445667676765 59999999999988752 47899999998876 78999999999983 5555667889999
Q ss_pred HHHhccCCcEEecCCC---CCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002729 783 HIRRSSLADLFLDTPL---CNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (887)
Q Consensus 783 ~~~~~~~~d~~ld~~~---~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~ 858 (887)
...+|..+|+++-+.+ ..| +++++|||+||+|||+.......+-+. . |.++ ++..|.+++.+....|.+
T Consensus 308 ~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~-----~-~~~G-~lv~d~~~la~~i~~ll~ 380 (415)
T cd03816 308 YPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVK-----H-GENG-LVFGDSEELAEQLIDLLS 380 (415)
T ss_pred HHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhc-----C-CCCE-EEECCHHHHHHHHHHHHh
Confidence 9999999999985332 123 888999999999999876554444332 2 6667 667899999999999999
Q ss_pred C---HHHHHHHHHHHHhhc
Q 002729 859 D---RQKLQALTNKLKSVR 874 (887)
Q Consensus 859 d---~~~~~~~~~~~~~~~ 874 (887)
| ++.+.+|+++.|+..
T Consensus 381 ~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 381 NFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred cCCCHHHHHHHHHHHHHhh
Confidence 9 999999999888764
No 128
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.49 E-value=3.7e-13 Score=146.69 Aligned_cols=243 Identities=7% Similarity=-0.003 Sum_probs=158.1
Q ss_pred CHHHHHHHHHhCCCeEEEecCCcCCCCc--hhhhhcCCCceEEe----ccccCCCCCCCcccE--------EE----ecC
Q 002729 600 SSDMIAKLINEDKIQILINLNGYTKGAR--NEIFAMQPAPIQVS----YMGFPGTTGASYIDY--------LV----TDE 661 (887)
Q Consensus 600 ~~~~~~~~i~~~~~dil~~~~~~~~~~~--~~~~~~r~apvq~~----~~g~~~t~g~~~~d~--------~~----~d~ 661 (887)
....+.+.|.+.++||.+=-+-..-|.. -...+.|.-||..+ +..|-...+...+-- ++ +|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 3577999999999999974332222222 22234455587655 233333233221111 11 577
Q ss_pred ccCCCCcCCCCccceeecCCccccCCCccccccCCCCCCC-CCCCCCCCCC--CcEEEEecCCCCCCCHHHHHHHHHHHh
Q 002729 662 FVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQ-PKRSDYGLPE--DKFIFACFNQLYKMDPEIFNTWCNILR 738 (887)
Q Consensus 662 ~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~-~~r~~~~l~~--~~~~~~~~~~~~k~~~~~~~~~~~il~ 738 (887)
++.|+..........+...++..+ ....|... ..+..+|++. ..++|.+--...|..+.++++|..+..
T Consensus 502 VIaPS~atq~L~~~vI~nVnGVDt--------e~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~ 573 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVHGVNP--------KFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKN 573 (794)
T ss_pred EEcCCHHHHHhcccceeecccccc--------cccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHh
Confidence 788876544332233322222111 11112111 1234566643 335565544557999999999999988
Q ss_pred hcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceee
Q 002729 739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMIT 817 (887)
Q Consensus 739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt 817 (887)
..|+.+|+|+|.||. ++.+++.+.+.|+ +|.|+|..+.. ...|+.+|||+-|+.+.| |++++|||+||+|||+
T Consensus 574 ~~pnvrLvIVGDGP~-reeLe~la~eLgL---~V~FLG~~dd~--~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVA 647 (794)
T PLN02501 574 ELDGFNLDVFGNGED-AHEVQRAAKRLDL---NLNFLKGRDHA--DDSLHGYKVFINPSISDVLCTATAEALAMGKFVVC 647 (794)
T ss_pred hCCCeEEEEEcCCcc-HHHHHHHHHHcCC---EEEecCCCCCH--HHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEE
Confidence 899999999999987 7789999998888 38999876544 256889999999988888 9999999999999998
Q ss_pred ecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHH
Q 002729 818 LPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQ 864 (887)
Q Consensus 818 ~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~ 864 (887)
-..+.... + . -|-+. ++..|.+++++.+.++..|++.+.
T Consensus 648 Td~pG~e~-V-----~-~g~nG-ll~~D~EafAeAI~~LLsd~~~rl 686 (794)
T PLN02501 648 ADHPSNEF-F-----R-SFPNC-LTYKTSEDFVAKVKEALANEPQPL 686 (794)
T ss_pred ecCCCCce-E-----e-ecCCe-EecCCHHHHHHHHHHHHhCchhhh
Confidence 76543211 1 1 13344 667899999999999999877543
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=4.4e-12 Score=144.83 Aligned_cols=267 Identities=12% Similarity=0.030 Sum_probs=157.6
Q ss_pred hCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH------
Q 002729 28 RNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFA------ 101 (887)
Q Consensus 28 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------ 101 (887)
.+|.+..++..++..+...+++++|++.++..++.+|+....++.+|.++.+.+++.++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34677888999999888999999999999999999999999999999988888887776655 4444433322
Q ss_pred -------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729 102 -------------DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (887)
Q Consensus 102 -------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (887)
.+++.+|.||-++|+.++|...|+++++.+|+++.+++++|..|... +.++|++++.+++..
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----
Confidence 45555555555555555555555555555555555555555555555 555555555554432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHH
Q 002729 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248 (887)
Q Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~ 248 (887)
+...+++.++.+++.+.+..+|++.+.+..+-......-....+ ...+.-+-..|..
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~-------------~~~~~~l~~~y~~ 235 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL-------------VGLLEDLYEPYKA 235 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh-------------HHHHHHHHHHHhh
Confidence 33344555555555555555555444333322222111111111 2233344456667
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002729 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328 (887)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 328 (887)
.++|++++.+++.+++.+|.+..+...++.+|. +.|.. ...+++.+++. .+--...++..++.-|+
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~fe 301 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIADFE 301 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccHHHHHHHHH
Confidence 777788888888888887777777777777776 23322 33344433321 11111234566677777
Q ss_pred HHHhccCCCc
Q 002729 329 ATLAVTTGLS 338 (887)
Q Consensus 329 ~~~~~~~~~~ 338 (887)
+.+...+.+-
T Consensus 302 k~i~f~~G~y 311 (906)
T PRK14720 302 KNIVFDTGNF 311 (906)
T ss_pred HHeeecCCCE
Confidence 7776665543
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=2.4e-10 Score=140.84 Aligned_cols=371 Identities=17% Similarity=0.070 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q 002729 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALA-LNPLLVDAHSNLGNLMKA 147 (887)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~ 147 (887)
.+...+..+...|++.+|...+..+-.. +.-.......+......|++..+...++.+-. ....++......+.++..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3445566677788888877766554211 11123344456666777888877776655411 112234455667788888
Q ss_pred cCChHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHH
Q 002729 148 QGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP-----DAYLNLGNVY 213 (887)
Q Consensus 148 ~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~l~~~~ 213 (887)
.|++++|...+..+....+. .......++.++...|++++|...+++++...+... .+...++.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 99999999999887654221 123445567788889999999999999987544322 2456788888
Q ss_pred HHcCChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC--------CCcHHHHHHHHH
Q 002729 214 KALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYKQAIGCD--------PRFLEAYNNLGN 278 (887)
Q Consensus 214 ~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~ 278 (887)
...|++++|...+++++..... ...+..++.++...|++++|...+++++... +.....+..++.
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 9999999999999998865322 3456778889999999999999999887531 112234567788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-----ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc--hhH-h----hHHH
Q 002729 279 ALKDVGRVDEAIQCYNQCLSLQPS-----HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS--APF-N----NLAV 346 (887)
Q Consensus 279 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~-~----~la~ 346 (887)
++...|++++|...+.+++..... ....+..++.++...|++++|...+.++........ ..+ . ....
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 889999999999999998775321 234566688899999999999999998876533211 111 1 1224
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHH
Q 002729 347 IYKQQGNYADAISCYNEVLRIDPLAA----DGLVNRGNTYKEIGRVTDAIQDYIRAITIR------PTMAEAHANLASAY 416 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 416 (887)
.+...|+.++|..++.......+... ..+..++.++...|++++|...+++++... .....++..+|.++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45567899999999877655332222 125678899999999999999999998752 22345788899999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 417 KDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 417 ~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
...|+.++|...+.+++++.....
T Consensus 742 ~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999865543
No 131
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.47 E-value=1.3e-12 Score=119.98 Aligned_cols=124 Identities=14% Similarity=0.098 Sum_probs=90.0
Q ss_pred HHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN 99 (887)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 99 (887)
.+|+++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567777766643 4556777777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002729 100 FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK 146 (887)
Q Consensus 100 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 146 (887)
++.+++.+|.++...|++++|+..|+++++..|+++..+..++.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777766665544
No 132
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.47 E-value=9.2e-13 Score=146.27 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=138.9
Q ss_pred ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecC
Q 002729 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF 750 (887)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~ 750 (887)
.+++..+|++.....+.. ...+.....|..+|++++.+++++.+++ .|..+.+++++.++ +..|+.+|+|+|.
T Consensus 193 ~~~i~vi~ngvd~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~ 267 (412)
T PRK10307 193 AEKVIFFPNWSEVARFQP----VADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQ 267 (412)
T ss_pred cccEEEECCCcCHhhcCC----CCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECC
Confidence 467888888654322110 0011112356778999888888888876 58899999999766 5578899999998
Q ss_pred ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-----chhHHHHHHhCCceeeeccc--ch
Q 002729 751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-----HTTGTDILWAGLPMITLPLE--KM 823 (887)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-----~~t~~eal~~gvPvvt~~g~--~~ 823 (887)
++. .+.+++.+++.|++ +|.|+|.++.++...+|+.+|+++-|+-.++ ++..+|||+||+|||+-... .+
T Consensus 268 g~~-~~~l~~~~~~~~l~--~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~ 344 (412)
T PRK10307 268 GGG-KARLEKMAQCRGLP--NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTEL 344 (412)
T ss_pred Chh-HHHHHHHHHHcCCC--ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchH
Confidence 876 67888899999983 7999999999999999999999999866554 23468999999999986422 12
Q ss_pred hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 824 ~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.. ++. + ++ +++ .|.+++.+...++..|++.+.+++++.++..
T Consensus 345 ~~-----~i~--~-~G-~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~ 388 (412)
T PRK10307 345 GQ-----LVE--G-IG-VCVEPESVEALVAAIAALARQALLRPKLGTVAREYA 388 (412)
T ss_pred HH-----HHh--C-Cc-EEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 22 232 3 34 443 6899999999999999999999999888754
No 133
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.47 E-value=3.1e-12 Score=139.52 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=125.2
Q ss_pred CCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhh--------HHHHHHHHHHcCCCCCcE
Q 002729 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAG--------EMRLRAYAVAQGVQPDQI 772 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--------~~~l~~~~~~~g~~~~r~ 772 (887)
.|..+|++.+.+++++.+++ .|..+.++++|.++.++.|+.+|+|+|.++.. ...+++.+...| ++|
T Consensus 183 ~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v 259 (380)
T PRK15484 183 LRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRC 259 (380)
T ss_pred HHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcE
Confidence 36678888777777777775 58999999999999999999999999976431 124444444444 579
Q ss_pred EEcCCCCcHHHHHhccCCcEEecCCCC-CC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcc-c--cCCHH
Q 002729 773 IFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM-I--VNSMK 847 (887)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~d~~ld~~~~-~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~-~--~~~~~ 847 (887)
+|.|.++.++...+|+.+|+++-|+.+ +| |++.+|||+||+|||+.....+.+-+.. |.++ + + ..|.+
T Consensus 260 ~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~------~~~G-~~l~~~~d~~ 332 (380)
T PRK15484 260 IMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGGITEFVLE------GITG-YHLAEPMTSD 332 (380)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCCcHhhccc------CCce-EEEeCCCCHH
Confidence 999999999999999999999999764 55 8999999999999998776555553322 5555 4 4 25899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 848 EYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 848 ~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
++.+...++.+|++. .++.++.|+..
T Consensus 333 ~la~~I~~ll~d~~~-~~~~~~ar~~~ 358 (380)
T PRK15484 333 SIISDINRTLADPEL-TQIAEQAKDFV 358 (380)
T ss_pred HHHHHHHHHHcCHHH-HHHHHHHHHHH
Confidence 999999999999985 66777776543
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.46 E-value=3.3e-12 Score=123.81 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=109.2
Q ss_pred cCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 002729 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTY-KEIGR--VTDAIQ 393 (887)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~ 393 (887)
.++.++++..+++++..+|++...|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 566678888888888888888888888999999999999999999999999999999999999875 67777 589999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 394 DYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 394 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
.++++++.+|++..+++.+|..+.+.|++++|+..|+++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999998887653
No 135
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.46 E-value=1.5e-12 Score=142.42 Aligned_cols=312 Identities=11% Similarity=0.125 Sum_probs=187.6
Q ss_pred eeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC------CCHHHHHHHHHhCC
Q 002729 539 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA------MSSDMIAKLINEDK 612 (887)
Q Consensus 539 iGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~ 612 (887)
|=++++.+...=+...+..+.+.+.+.++||.+++............... . ....+.. .....+.+.|+..+
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGESEVKPPIDATI-I-LNLNMSKNPLSFLLALWKLRKILRQFK 79 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCCCccchhhccc-e-EEecccccchhhHHHHHHHHHHHHhcC
Confidence 45666665433333567778888888888888876543221111111000 0 0111110 11245677888999
Q ss_pred CeEEEecCCcCCCCchhhhh--cCCCceEEeccccCCCCCCCcc----cEEEecCccCCCC--c-----C-CCCccceee
Q 002729 613 IQILINLNGYTKGARNEIFA--MQPAPIQVSYMGFPGTTGASYI----DYLVTDEFVSPLR--Y-----A-HIYSEKLVH 678 (887)
Q Consensus 613 ~dil~~~~~~~~~~~~~~~~--~r~apvq~~~~g~~~t~g~~~~----d~~~~d~~~~p~~--~-----~-~~~~e~~~~ 678 (887)
+||++-...|+.-. ..++. .+..|+.++.-+.......... -..+++....... . . ....+++..
T Consensus 80 pdiv~~~~~~~~~~-~~l~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 158 (360)
T cd04951 80 PDVVHAHMFHANIF-ARLLRLFLPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFV 158 (360)
T ss_pred CCEEEEcccchHHH-HHHHHhhCCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEE
Confidence 99997544332100 01111 1234555443222211111000 0011111111111 0 1 123478888
Q ss_pred cCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729 679 VPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEM 756 (887)
Q Consensus 679 lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 756 (887)
+|++.-+..+... .......|..++++++.+++++.+++ .|..+.+++++.++.+..|+.+|+|+|.++. .+
T Consensus 159 i~ng~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~ 232 (360)
T cd04951 159 VYNGIDTDRFRKD-----PARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDGPL-RA 232 (360)
T ss_pred EccccchhhcCcc-----hHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCCCc-HH
Confidence 8876432211100 00111246677888888877777764 6999999999999999899999999998776 56
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhc
Q 002729 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT 835 (887)
Q Consensus 757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~ 835 (887)
.+++.+...|+ .++|.|.|.. .+...+|..+|+++-|..++| |.+++|||++|+|||+.....+.+-+. ..
T Consensus 233 ~~~~~~~~~~~-~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~-----~~ 304 (360)
T cd04951 233 TLERLIKALGL-SNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAGGVREVVG-----DS 304 (360)
T ss_pred HHHHHHHhcCC-CCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCCChhhEec-----CC
Confidence 78888888898 5899999964 466778999999999977777 999999999999999876655554332 11
Q ss_pred CCCCccccCCHHHHHHHHHHHh-cCHHHHHHHHHH
Q 002729 836 GLGEEMIVNSMKEYEERAVSLA-LDRQKLQALTNK 869 (887)
Q Consensus 836 g~~~~~~~~~~~~y~~~a~~l~-~d~~~~~~~~~~ 869 (887)
|. - +...|.+++++...++. .+++.+..++..
T Consensus 305 g~-~-~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~ 337 (360)
T cd04951 305 GL-I-VPISDPEALANKIDEILKMSGEERDIIGAR 337 (360)
T ss_pred ce-E-eCCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22 1 23488999999999998 566666666655
No 136
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.46 E-value=1.7e-12 Score=142.12 Aligned_cols=314 Identities=14% Similarity=0.105 Sum_probs=186.3
Q ss_pred eeeeecCCCCCCh--hHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHH------HHHhhcCceEECCCCCHHHHHHHHH
Q 002729 538 RVGYVSSDFGNHP--LSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQ------RTQSEAEHFVDVSAMSSDMIAKLIN 609 (887)
Q Consensus 538 riGyvs~d~~~h~--~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~ 609 (887)
||.+|+..|.... +...+..+.+.+-..+.+|.++............ .+...........-.....+.+.++
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPARVVPVPSVPLPGYPEIRLALPPRRRVRRLLD 80 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCCCceeecccccCcccceEecccchhhHHHHHH
Confidence 5667776663321 2245566666666667888888765322110000 0000000111111123456788888
Q ss_pred hCCCeEEEecCCcCCCCchhhh-hcCCCceEEeccccCCCC----C---------------CCcccEEEecCccCCCCcC
Q 002729 610 EDKIQILINLNGYTKGARNEIF-AMQPAPIQVSYMGFPGTT----G---------------ASYIDYLVTDEFVSPLRYA 669 (887)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~-~~r~apvq~~~~g~~~t~----g---------------~~~~d~~~~d~~~~p~~~~ 669 (887)
..++||++-.+....+.....+ ..+..|+-+.+.+..... + ....|.+++..-.......
T Consensus 81 ~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~ 160 (364)
T cd03814 81 AFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLADELR 160 (364)
T ss_pred hcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHHHHHh
Confidence 9999999643322222111222 224567655432211100 0 0123444331111111112
Q ss_pred CCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEE
Q 002729 670 HIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWL 747 (887)
Q Consensus 670 ~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~ 747 (887)
.....++..+|++.....+.. .......+..++ +.+.++++..+++ .|..+.+++++.++... |+.+|++
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~------~~~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i 232 (364)
T cd03814 161 ARGFRRVRLWPRGVDTELFHP------RRRDEALRARLG-PPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVI 232 (364)
T ss_pred ccCCCceeecCCCccccccCc------ccccHHHHHHhC-CCCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEE
Confidence 233345555655432211110 001111233444 4455666666665 68899999999999888 9999999
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhh
Q 002729 748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATR 826 (887)
Q Consensus 748 ~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r 826 (887)
+|.++. ...++ +. .++|.|.|..+.++....|..+|++|.|....| |+|++|||++|+|||+.+...+.+.
T Consensus 233 ~G~~~~-~~~~~------~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~ 304 (364)
T cd03814 233 VGDGPA-RARLE------AR-YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADI 304 (364)
T ss_pred EeCCch-HHHHh------cc-CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhh
Confidence 997765 33333 33 578999999999999999999999999976666 9999999999999999888777665
Q ss_pred hHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 827 VAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 827 ~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
+.. +-.+ +++ .+.+++++....+..|++.+.++....++..
T Consensus 305 i~~------~~~g-~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 305 VTD------GENG-LLVEPGDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred hcC------Ccce-EEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 432 3344 444 5677899999999999999999998887754
No 137
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.46 E-value=3.5e-10 Score=139.37 Aligned_cols=370 Identities=15% Similarity=0.037 Sum_probs=266.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHH
Q 002729 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIE-LRPNFADAWSNLASAYM 112 (887)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~ 112 (887)
..+...+..+...|++.+|+..+..+-.. +.-.......+......|++..+...+..+-. ....++......+.++.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34455566777888888888766544211 11133445566777788888887777655411 11223445566778888
Q ss_pred HcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHHHHHHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAWSNLAGL 178 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~ 178 (887)
..|++++|...+..+....+. .......++.++...|++++|...+++++...+.. ..+...++.+
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 899999999999888654221 12344567788889999999999999998754432 2356778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-----C----hhHHhhHH
Q 002729 179 FMESGDLNRALQYYKEAVKLKPTF------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP-----N----AIAFGNLA 243 (887)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~----~~~~~~la 243 (887)
+...|++++|...+++++...... ...+..++.++...|++++|...+++++.... . ...+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 999999999999999998753321 23567789999999999999999999887521 1 23455778
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---hHHHH----hHH
Q 002729 244 STYYERGQADMAILYYKQAIGCDP-----RFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH---PQALT----NLG 311 (887)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~----~l~ 311 (887)
.++...|++++|...+.+++.... .....+..++.++...|++++|...+.++....... ..... ...
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 889999999999999999875422 124456678899999999999999999987753321 11111 122
Q ss_pred HHHHHcCChhHHHHHHHHHHhccCCCch----hHhhHHHHHHHcCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHH
Q 002729 312 NIYMEWNMLPAAASYYKATLAVTTGLSA----PFNNLAVIYKQQGNYADAISCYNEVLRIDP------LAADGLVNRGNT 381 (887)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~ 381 (887)
..+...|+.+.|...+.......+.... .+..++.++...|++++|...+++++.... ....++..+|.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4455688999999998776553322221 145788999999999999999999987621 234578889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 002729 382 YKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 382 ~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
+...|+.++|...+.++++....
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999988654
No 138
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.45 E-value=5.9e-13 Score=145.83 Aligned_cols=309 Identities=12% Similarity=0.054 Sum_probs=191.8
Q ss_pred eeeeecCCCCC---ChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhc------C--ceEECCCCCHHHHHH
Q 002729 538 RVGYVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA------E--HFVDVSAMSSDMIAK 606 (887)
Q Consensus 538 riGyvs~d~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~ 606 (887)
||.+++..+.. .=++.++..+.+.+.+...+++++.................. . .+... .........
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 79 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLL-FLLRAGDRL 79 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchh-hHHHHHHHH
Confidence 57788887766 234478888888888766666555544322211010000000 0 11111 111334455
Q ss_pred HHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEecc-----ccCCCCCC--------------CcccEEEecCccCCCC
Q 002729 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYM-----GFPGTTGA--------------SYIDYLVTDEFVSPLR 667 (887)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~-----g~~~t~g~--------------~~~d~~~~d~~~~p~~ 667 (887)
.+...++||++-.+... ..+.....|+.++.- .+|...+. ...|.+++ +..
T Consensus 80 ~~~~~~~Dii~~~~~~~-----~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~-----~s~ 149 (365)
T cd03809 80 LLLLLGLDLLHSPHNTA-----PLLRLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIIT-----VSE 149 (365)
T ss_pred HhhhcCCCeeeeccccc-----CcccCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEE-----ccH
Confidence 66668899996555443 222344567766532 23332221 12344443 322
Q ss_pred c-----CCCC---ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHH
Q 002729 668 Y-----AHIY---SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNIL 737 (887)
Q Consensus 668 ~-----~~~~---~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il 737 (887)
. ...+ .+++..+|++....... +.....+...+.+.+.++++.++++ .|..+.+++++..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~ 221 (365)
T cd03809 150 ATKRDLLRYLGVPPDKIVVIPLGVDPRFRP--------PPAEAEVLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLP 221 (365)
T ss_pred HHHHHHHHHhCcCHHHEEeeccccCccccC--------CCchHHHHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHH
Confidence 1 1122 46677777654322111 0000001112334445566666665 589999999999999
Q ss_pred hhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCcee
Q 002729 738 RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMI 816 (887)
Q Consensus 738 ~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvv 816 (887)
...|+.+|.++|.++..........++.+. .++|.|.|.++..+....+..+|+++-|.-+.| |.+++|||++|+|||
T Consensus 222 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI 300 (365)
T cd03809 222 AKGPDPKLVIVGKRGWLNEELLARLRELGL-GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVI 300 (365)
T ss_pred HhcCCCCEEEecCCccccHHHHHHHHHcCC-CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEE
Confidence 998889999998765434444444467777 689999999999999999999999999966655 999999999999999
Q ss_pred eecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 817 TLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 817 t~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
+...+.+.+.++. .|. - +...|.+++++...++..|++.+..+.+..++.
T Consensus 301 ~~~~~~~~e~~~~-----~~~-~-~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 350 (365)
T cd03809 301 ASNISSLPEVAGD-----AAL-Y-FDPLDPEALAAAIERLLEDPALREELRERGLAR 350 (365)
T ss_pred ecCCCCccceecC-----cee-e-eCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9777666664431 121 1 334789999999999999999999999888743
No 139
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.44 E-value=1.4e-12 Score=143.62 Aligned_cols=167 Identities=17% Similarity=0.148 Sum_probs=123.7
Q ss_pred CcEEEEecCC--CCCCCHHHHHHHHHHHhhcCC-----ceEEEecCChh-----hHHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729 712 DKFIFACFNQ--LYKMDPEIFNTWCNILRRVPN-----SALWLLRFPAA-----GEMRLRAYAVAQGVQPDQIIFTDVAM 779 (887)
Q Consensus 712 ~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~r~~~~~~~~ 779 (887)
+.++++++++ +.|....++++|..+.++.|+ .+|+|+|.++. ..+.|++.+.+.|+ .++|.|.|.++
T Consensus 236 ~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f~g~v~ 314 (419)
T cd03806 236 RENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEFVVNAP 314 (419)
T ss_pred CCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEEecCCC
Confidence 3345555555 569999999999999988765 89999987532 24578888999999 68999999999
Q ss_pred cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeec-ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHh
Q 002729 780 KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLP-LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLA 857 (887)
Q Consensus 780 ~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~-g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~ 857 (887)
.++...+|+.+|++|-|....| |.+.+|||++|+|||+.. |....+-+... .-|-++ +++.|++++.+.+.++.
T Consensus 315 ~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~---~~g~~G-~l~~d~~~la~ai~~ll 390 (419)
T cd03806 315 FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPW---DGGPTG-FLASTAEEYAEAIEKIL 390 (419)
T ss_pred HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCchheeecc---CCCCce-EEeCCHHHHHHHHHHHH
Confidence 9999999999999999977677 999999999999999765 23222222100 015566 77889999999999999
Q ss_pred cCHH-HHHHHHHHHHhhcccCCCCCcCCcc
Q 002729 858 LDRQ-KLQALTNKLKSVRLTCPLFDTARWV 886 (887)
Q Consensus 858 ~d~~-~~~~~~~~~~~~~~~~~l~d~~~~~ 886 (887)
+|++ .++.+++.-+. . .--|+..+|.
T Consensus 391 ~~~~~~~~~~~~~~~~-~--~~~fs~~~f~ 417 (419)
T cd03806 391 SLSEEERLRIRRAARS-S--VKRFSDEEFE 417 (419)
T ss_pred hCCHHHHHHHHHHHHH-H--HHhhCHHHhc
Confidence 8654 44444443333 2 2346666664
No 140
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.4e-11 Score=117.43 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=117.2
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc
Q 002729 255 AILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT 334 (887)
Q Consensus 255 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 334 (887)
+...+-+....+|++..+ ..++..+...|+-+.+..+..+.....|.+......+|......|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 444444445566666666 6666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (887)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (887)
|++..+|+.+|.+|.+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+....+.+..+..+|+.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCHHHHHHHHHH
Q 002729 415 AYKDSGHVEAAIKSYKQ 431 (887)
Q Consensus 415 ~~~~~g~~~~A~~~~~~ 431 (887)
+....|++.+|..+-.+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 66666666666665544
No 141
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.44 E-value=1.6e-12 Score=144.78 Aligned_cols=160 Identities=11% Similarity=0.068 Sum_probs=120.6
Q ss_pred CCCCCCCcEEEEecCCC--CCCCHHHHHHHHHH--HhhcCCceEEEecCChhh----------HHHHHHHHHHcCCCCCc
Q 002729 706 DYGLPEDKFIFACFNQL--YKMDPEIFNTWCNI--LRRVPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQ 771 (887)
Q Consensus 706 ~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~r 771 (887)
.++++++.+++++++|+ .|..+.++++++++ ++..|+.. +++|.++.. .+.+...+.+.|+ .++
T Consensus 241 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~ 318 (439)
T TIGR02472 241 PFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGK 318 (439)
T ss_pred hhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCC-Cce
Confidence 35566666777777776 59999999999864 23334433 345655431 1234556778899 689
Q ss_pred EEEcCCCCcHHHHHhccCC----cEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729 772 IIFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--N 844 (887)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~----d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~ 844 (887)
|+|+|.++.++...+|+.+ |+|+-|+.++| |++++|||++|+|||+-......+-+.. |.++ +++ .
T Consensus 319 V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~------~~~G-~lv~~~ 391 (439)
T TIGR02472 319 VAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIAN------CRNG-LLVDVL 391 (439)
T ss_pred EEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcC------CCcE-EEeCCC
Confidence 9999999888888888866 99999988888 9999999999999997765555543321 4555 554 6
Q ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 845 SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 845 ~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
|++++.+...++..|++.++++.++.|+..
T Consensus 392 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~ 421 (439)
T TIGR02472 392 DLEAIASALEDALSDSSQWQLWSRNGIEGV 421 (439)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999888764
No 142
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.43 E-value=5.8e-12 Score=137.54 Aligned_cols=297 Identities=13% Similarity=0.117 Sum_probs=183.0
Q ss_pred HhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhc----CceEECC--CCCHHHHH-HHHHhCCCeEEEecCCcCCC
Q 002729 553 HLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEA----EHFVDVS--AMSSDMIA-KLINEDKIQILINLNGYTKG 625 (887)
Q Consensus 553 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~-~~i~~~~~dil~~~~~~~~~ 625 (887)
.++..+.+.+.+.+++|.++...+..... ........ ..+.... .....-.. -.+...++||++--.....+
T Consensus 18 ~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~ 96 (357)
T cd03795 18 QVIRDLAEGLAARGIEVAVLCASPEPKGR-DEERNGHRVIRAPSLLNVASTPFSPSFFKQLKKLAKKADVIHLHFPNPLA 96 (357)
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCcch-hhhccCceEEEeecccccccccccHHHHHHHHhcCCCCCEEEEecCcchH
Confidence 56667778888888999888876543321 11110000 0011111 11111111 11568899999754433322
Q ss_pred CchhhhhcCCCceEEeccccCCCCCC-------------CcccEEEecCccCCCCc-------CCCCccceeecCCcccc
Q 002729 626 ARNEIFAMQPAPIQVSYMGFPGTTGA-------------SYIDYLVTDEFVSPLRY-------AHIYSEKLVHVPHCYFV 685 (887)
Q Consensus 626 ~~~~~~~~r~apvq~~~~g~~~t~g~-------------~~~d~~~~d~~~~p~~~-------~~~~~e~~~~lp~~~~~ 685 (887)
.-...+..+..|+.++|-+....... ...|.+++ +... ...+.+++..+|++...
T Consensus 97 ~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~-----~s~~~~~~~~~~~~~~~~~~~i~~gi~~ 171 (357)
T cd03795 97 DLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVA-----TSPNYAETSPVLRRFRDKVRVIPLGLDP 171 (357)
T ss_pred HHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEe-----CcHHHHHHHHHhcCCccceEEecCCCCh
Confidence 22233333456777776543222111 12333333 2221 12234778888876543
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHH
Q 002729 686 NDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAV 763 (887)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~ 763 (887)
.... +...........+.+.++++++++. .|..+.+++++.++. +.+|+++|.++. ...+.+.+.
T Consensus 172 ~~~~--------~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g~~-~~~~~~~~~ 238 (357)
T cd03795 172 ARYP--------RPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEGPL-EAELEALAA 238 (357)
T ss_pred hhcC--------CcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCChh-HHHHHHHHH
Confidence 2211 0000000112334555666666665 688888888888764 789999998765 567777777
Q ss_pred HcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCC---CCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCc
Q 002729 764 AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL---CNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEE 840 (887)
Q Consensus 764 ~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~---~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~ 840 (887)
..+. .++|.|.|.++..+...+|+.+|+++-|.. .+.|++++|||++|+|||+-.......-+. .-|-.+
T Consensus 239 ~~~~-~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~-----~~~~~g- 311 (357)
T cd03795 239 ALGL-LDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVN-----LHGVTG- 311 (357)
T ss_pred hcCC-cceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHh-----hCCCce-
Confidence 8888 589999999999999999999999998864 344999999999999999865544443221 114444
Q ss_pred ccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729 841 MIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 841 ~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~ 875 (887)
+++ .|.+++++....+.+|++.++.++.+.++...
T Consensus 312 ~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 348 (357)
T cd03795 312 LVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAE 348 (357)
T ss_pred EEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 444 68999999999999999999999999887653
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=5.5e-11 Score=111.92 Aligned_cols=183 Identities=19% Similarity=0.164 Sum_probs=142.5
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (887)
...+-.+..+....|+.+.|..++++.....|++..+-...|..+...|++++|+++|+..++-+|.+..++.....+..
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 33444555666677788888888888777778887777777888888888888888888888888888777777777777
Q ss_pred HcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHH
Q 002729 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAI 392 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 392 (887)
.+|+.-+|++.+...++.++.+.++|..++.+|...|++++|.-++++++-.+|.++..+..+|.+++-+| ++.-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 78888888888888888888888888888888888888888888888888888888888888888777665 567788
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHh
Q 002729 393 QDYIRAITIRPTMAEAHANLASAYKD 418 (887)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~~ 418 (887)
++|.++++++|.+..+++.+-.+...
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 88888888888777777666555443
No 144
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.42 E-value=2.9e-11 Score=115.39 Aligned_cols=176 Identities=23% Similarity=0.181 Sum_probs=128.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 002729 52 CIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131 (887)
Q Consensus 52 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 131 (887)
+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|....+.|++.+|+..++++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 455555555667777666 7777777777777777777777777777777776667777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002729 132 PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211 (887)
Q Consensus 132 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 211 (887)
|++.+++..+|.+|.+.|++++|...|.+++++.|+++.+.++++..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777766667777777777
Q ss_pred HHHHcCChHHHHHHHHH
Q 002729 212 VYKALGMPQEAIMCYQR 228 (887)
Q Consensus 212 ~~~~~g~~~~A~~~~~~ 228 (887)
+....|++.+|..+..+
T Consensus 211 ~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 211 VVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhhcCChHHHHhhccc
Confidence 77777777777666544
No 145
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.42 E-value=2.5e-12 Score=142.75 Aligned_cols=186 Identities=15% Similarity=0.201 Sum_probs=143.6
Q ss_pred ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC--ceEEEe
Q 002729 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN--SALWLL 748 (887)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~--~~l~~~ 748 (887)
.+++..+|++.....+. +......|..+|++++.+++++++++ .|..+.+++++.++++..|+ .+|+++
T Consensus 186 ~~ki~vi~ngvd~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~iv 258 (405)
T TIGR03449 186 PDRIDVVAPGADLERFR-------PGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVV 258 (405)
T ss_pred hhhEEEECCCcCHHHcC-------CCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEE
Confidence 46777788764321111 11112356778888888888888887 58899999999999998887 788888
Q ss_pred cCCh----hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccch
Q 002729 749 RFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKM 823 (887)
Q Consensus 749 ~~~~----~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~ 823 (887)
|.+. ...+.+++..+..|+ .++|.|+|.++.++...+|+.+|+++-|+-.+| |++++|||++|+|||+......
T Consensus 259 G~~~~~g~~~~~~l~~~~~~~~l-~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~~ 337 (405)
T TIGR03449 259 GGPSGSGLATPDALIELAAELGI-ADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGGL 337 (405)
T ss_pred eCCCCCcchHHHHHHHHHHHcCC-CceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCCc
Confidence 8532 225678888999999 589999999999999999999999999966666 9999999999999998765444
Q ss_pred hhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 824 ATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 824 ~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
.+ ++.. |-++ +++ .|.+++.+...++.+|++.+..+++..++.
T Consensus 338 ~e-----~i~~-~~~g-~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~ 382 (405)
T TIGR03449 338 PV-----AVAD-GETG-LLVDGHDPADWADALARLLDDPRTRIRMGAAAVEH 382 (405)
T ss_pred Hh-----hhcc-CCce-EECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 43 2211 4445 554 489999999999999999999999888764
No 146
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.42 E-value=3.8e-12 Score=126.90 Aligned_cols=113 Identities=27% Similarity=0.358 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHHHH
Q 002729 38 LLGAIYYQLHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIEL------RPNFADAWSNL 107 (887)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 107 (887)
.-|.-+++.|++...+..|+.+++...++ ..+|..+|++|+-+++|++|+++-..=+.+ .-..+.+.-++
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 34556667777777777777777766554 345666777777777777777654322211 11223344556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC
Q 002729 108 ASAYMRKGRLNEAAQCCRQALALNP------LLVDAHSNLGNLMKAQGL 150 (887)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~ 150 (887)
|..+.-.|.+++|+.+..+-+.... ....+++++|.+|...|+
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 7777777777777777666554321 134467777777776654
No 147
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.41 E-value=2.2e-11 Score=118.14 Aligned_cols=123 Identities=17% Similarity=0.232 Sum_probs=61.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHH
Q 002729 80 KGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM-KAQGL--VQEAYS 156 (887)
Q Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 156 (887)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++..++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 334444555555555555555555555555555555555555555555555555555555555432 33343 245555
Q ss_pred HHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729 157 CYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (887)
Q Consensus 157 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (887)
.++++++.+|++..++..+|..+.+.|++++|+..++++++..|.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5555555555555555555555555555555555555555544443
No 148
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.41 E-value=7.1e-12 Score=134.56 Aligned_cols=221 Identities=18% Similarity=0.210 Sum_probs=197.4
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM 315 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (887)
......++..+...|-..+|+..+++. +.|-....+|...|+..+|..+..+-++ .|+++..|..+|++..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 445567899999999999999999885 4788889999999999999999999888 7788889999998888
Q ss_pred HcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002729 316 EWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDY 395 (887)
Q Consensus 316 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 395 (887)
...-+++|.++.+..- ..+...+|......++++++.+.++..++++|-....|+.+|.+..++++++.|.+.|
T Consensus 469 d~s~yEkawElsn~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred ChHHHHHHHHHhhhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8777777777776543 3355566666677899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHH
Q 002729 396 IRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIR 471 (887)
Q Consensus 396 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 471 (887)
..++.++|++.++|++++.+|.+.|+..+|...++++++.+-++..+|-|.+......|.|+++.+.+.++.++-+
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877543
No 149
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.41 E-value=8.4e-12 Score=137.00 Aligned_cols=305 Identities=17% Similarity=0.168 Sum_probs=188.8
Q ss_pred eecCCCCC---ChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHH-----------H-h--hcCceEECCCCCHHH
Q 002729 541 YVSSDFGN---HPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRT-----------Q-S--EAEHFVDVSAMSSDM 603 (887)
Q Consensus 541 yvs~d~~~---h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-----------~-~--~~~~~~~~~~~~~~~ 603 (887)
+++..+.. .-...++..+++.+.+.+++|++++............. . . ....+..........
T Consensus 3 ii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (377)
T cd03798 3 VISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARA 82 (377)
T ss_pred EeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHH
Confidence 45555543 33446777888888888899999886654332111000 0 0 000010111112456
Q ss_pred HHHHHH--hCCCeEEEecCCcCCCCchhhhhc-CCCceEEeccccCCCCC-------------CCcccEEEecCccCCCC
Q 002729 604 IAKLIN--EDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTG-------------ASYIDYLVTDEFVSPLR 667 (887)
Q Consensus 604 ~~~~i~--~~~~dil~~~~~~~~~~~~~~~~~-r~apvq~~~~g~~~t~g-------------~~~~d~~~~d~~~~p~~ 667 (887)
+.+.++ ..++||++-......+.....+.. ...|+.++..+...... +...|.+++..-.....
T Consensus 83 ~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 162 (377)
T cd03798 83 LLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADE 162 (377)
T ss_pred HHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHH
Confidence 788888 999999976643332222222222 23577666544332221 12345555422111111
Q ss_pred cCC--CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc
Q 002729 668 YAH--IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS 743 (887)
Q Consensus 668 ~~~--~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~ 743 (887)
... ....++..+|++....... +.........+...+.++++++++. .|..+.++++|..+....|+.
T Consensus 163 ~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~ 234 (377)
T cd03798 163 LKALGIDPEKVTVIPNGVDTERFS--------PADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDV 234 (377)
T ss_pred HHHhcCCCCceEEcCCCcCcccCC--------CcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCe
Confidence 112 2456677777654321111 1000000122344566777777775 588999999999998888999
Q ss_pred eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccc
Q 002729 744 ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEK 822 (887)
Q Consensus 744 ~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~ 822 (887)
++.+.|.++. ...+.+.....++ .++|.+.|.++.++....+..+|+++-|....| |++++|||++|+|||+.....
T Consensus 235 ~l~i~g~~~~-~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~ 312 (377)
T cd03798 235 HLVIVGDGPL-REALEALAAELGL-EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG 312 (377)
T ss_pred EEEEEcCCcc-hHHHHHHHHhcCC-cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC
Confidence 9999987665 5677777888888 588999999999999999999999999966555 999999999999999877665
Q ss_pred hhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHH
Q 002729 823 MATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQK 862 (887)
Q Consensus 823 ~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~ 862 (887)
+.+.+.. +..+ ++. .|.+++++....+..|++.
T Consensus 313 ~~~~~~~------~~~g-~~~~~~~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 313 IPEIITD------GENG-LLVPPGDPEALAEAILRLLADPWL 347 (377)
T ss_pred hHHHhcC------Ccce-eEECCCCHHHHHHHHHHHhcCcHH
Confidence 5543321 3323 333 6899999999999999885
No 150
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.41 E-value=5.2e-12 Score=138.42 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=120.0
Q ss_pred CCCCCCCCCCcEE--EEecCCC--CCCCHHHHHHHHHHHhh-cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLPEDKFI--FACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~~~~~~--~~~~~~~--~k~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.|..++++++.++ |++.... .|..+.++++|..+.+. .|+.+++++|.++.... .++ .++|.|.|.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~--------~~~-~~~v~~~g~ 251 (365)
T cd03825 181 ARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIP--------PDL-PFPVHYLGS 251 (365)
T ss_pred HHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhh--------ccC-CCceEecCC
Confidence 4566777766544 5555554 79999999999877654 68899999887654211 145 578999999
Q ss_pred CC-cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHH
Q 002729 778 AM-KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERA 853 (887)
Q Consensus 778 ~~-~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a 853 (887)
++ .++...+|+.+|+++-|+-+.| |++++|||++|+|||+.....+.+-+.. +.++ ++. .|.+++++..
T Consensus 252 ~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~l 324 (365)
T cd03825 252 LNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDIVDH------GVTG-YLAKPGDPEDLAEGI 324 (365)
T ss_pred cCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhheeC------CCce-EEeCCCCHHHHHHHH
Confidence 98 6678889999999999966666 9999999999999998877666664432 3344 444 4789999999
Q ss_pred HHHhcCHHHHHHHHHHHHhhc
Q 002729 854 VSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 854 ~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.++.+|++.+.+++.+.++..
T Consensus 325 ~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 325 EWLLADPDEREELGEAARELA 345 (365)
T ss_pred HHHHhCHHHHHHHHHHHHHHH
Confidence 999999999999998887654
No 151
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.40 E-value=2.9e-11 Score=131.77 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=118.4
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHH-HHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRA-YAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~-~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
.+.++|+.++++ .|..+.+++++..+.+..|+.+|+++|.++.. ..... .+...+. .++|.|.|. .++...+|
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~ 261 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEE-NPAAILEIEKLGL-EGRVEFLGF--RDDVPELL 261 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcc-hhhHHHHHHhcCC-cceEEEeec--cccHHHHH
Confidence 445667766665 69999999999999888899999999977652 22222 2556666 588999998 55678889
Q ss_pred cCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHH
Q 002729 788 SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQ 864 (887)
Q Consensus 788 ~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~ 864 (887)
+.+|+++-|..+.| |++++|||++|+|||+........-+. . |-.+ ++. +|.+++++....+..|++.+.
T Consensus 262 ~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~-----~-~~~g-~~~~~~~~~~~~~~i~~l~~~~~~~~ 334 (359)
T cd03808 262 AAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCREAVI-----D-GVNG-FLVPPGDAEALADAIERLIEDPELRA 334 (359)
T ss_pred HhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCchhhhh-----c-Ccce-EEECCCCHHHHHHHHHHHHhCHHHHH
Confidence 99999999976666 999999999999999976665544322 1 4445 554 478999999999999999999
Q ss_pred HHHHHHHhhc
Q 002729 865 ALTNKLKSVR 874 (887)
Q Consensus 865 ~~~~~~~~~~ 874 (887)
.++...++..
T Consensus 335 ~~~~~~~~~~ 344 (359)
T cd03808 335 RMGQAARKRA 344 (359)
T ss_pred HHHHHHHHHH
Confidence 9988877663
No 152
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.40 E-value=1.6e-12 Score=125.17 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=130.9
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh-cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcH
Q 002729 705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR-VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (887)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~ 781 (887)
...+.+++.++++++++. .|....+++++..+..+ .|+..|+++|.++. ...+...+...++ .++|.|.|..+..
T Consensus 7 ~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~-~~~~~~~~~~~~~-~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 7 EKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEY-KKELKNLIEKLNL-KENIIFLGYVPDD 84 (172)
T ss_dssp HHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCH-HHHHHHHHHHTTC-GTTEEEEESHSHH
T ss_pred HHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccc-ccccccccccccc-ccccccccccccc
Confidence 344566777888888886 48999999999998875 89999999995544 5568888889998 6899999999988
Q ss_pred HHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhc
Q 002729 782 EHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLAL 858 (887)
Q Consensus 782 ~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~ 858 (887)
+...+|+.+|+++-|..+.| |++.+|||++|+|||+.....+.+-+.. |.++ ++. .|.++.++...++..
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~------~~~g-~~~~~~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIIND------GVNG-FLFDPNDIEELADAIEKLLN 157 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGT------TTSE-EEESTTSHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCceeecc------ccce-EEeCCCCHHHHHHHHHHHHC
Confidence 89999999999999977666 9999999999999999887777765543 4455 554 567999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 002729 859 DRQKLQALTNKLKSV 873 (887)
Q Consensus 859 d~~~~~~~~~~~~~~ 873 (887)
|++.++.|+++.|++
T Consensus 158 ~~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 158 DPELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC
Confidence 999999999998864
No 153
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.40 E-value=5.3e-12 Score=137.88 Aligned_cols=309 Identities=14% Similarity=0.097 Sum_probs=185.5
Q ss_pred eeeeecCCCCCChh---HHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHH--HHhhcC----------------ceEEC
Q 002729 538 RVGYVSSDFGNHPL---SHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQR--TQSEAE----------------HFVDV 596 (887)
Q Consensus 538 riGyvs~d~~~h~~---~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~----------------~~~~~ 596 (887)
||-+++..|..+.. ..++..+.+.+...++||.++............. ...... .+...
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDYD 80 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccccccceeeccccccccCCCchhhhhHHHhcc
Confidence 46677777755422 2466677777777788988887654332110000 000000 00000
Q ss_pred CCCCHHHHHHHHHhCCCeEEEecCCcCCCCch-hhhhcCCCceEEecccc----CCCCC-CCcccEEEecCccCCCCcCC
Q 002729 597 SAMSSDMIAKLINEDKIQILINLNGYTKGARN-EIFAMQPAPIQVSYMGF----PGTTG-ASYIDYLVTDEFVSPLRYAH 670 (887)
Q Consensus 597 ~~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~-~~~~~r~apvq~~~~g~----~~t~g-~~~~d~~~~d~~~~p~~~~~ 670 (887)
.......+.+.|...++||++-......+... ........|+.++.-++ +.... ....|.+++-.-..-.....
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 160 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQGLFKKGGDAVIAPSRFLLDRYVA 160 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchhhhhccCCCEEEEeCHHHHHHHHH
Confidence 00113556788889999999755442211111 12233446877664322 11111 12225554411100000011
Q ss_pred C--CccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEE
Q 002729 671 I--YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALW 746 (887)
Q Consensus 671 ~--~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~ 746 (887)
. ..+++..+|++....... +. .+ +.+++.++++.+++. .|..+.+++++..+.+ |+.+|+
T Consensus 161 ~~~~~~~~~vi~n~~~~~~~~--------~~---~~---~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~ 224 (359)
T cd03823 161 NGLFAEKISVIRNGIDLDRAK--------RP---RR---APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELV 224 (359)
T ss_pred cCCCccceEEecCCcChhhcc--------cc---cc---CCCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEE
Confidence 1 125666666643321111 10 00 345566777777775 5889999999988776 889999
Q ss_pred EecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCC--CCCchhHHHHHHhCCceeeecccchh
Q 002729 747 LLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNAHTTGTDILWAGLPMITLPLEKMA 824 (887)
Q Consensus 747 ~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~--~~g~~t~~eal~~gvPvvt~~g~~~~ 824 (887)
++|.++... ...... +. .++|.|.|.++..+...+|..+|+++-|.. .+.|++++|||++|+|||+.......
T Consensus 225 i~G~~~~~~-~~~~~~---~~-~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 299 (359)
T cd03823 225 IVGNGLELE-EESYEL---EG-DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA 299 (359)
T ss_pred EEcCchhhh-HHHHhh---cC-CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH
Confidence 999766522 222222 44 578999999999999999999999999964 44499999999999999997766655
Q ss_pred hhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 825 TRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 825 ~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
+.+.. |..+ ++. .|.+++++....+.+|++.++.++++.++..
T Consensus 300 e~i~~------~~~g-~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 344 (359)
T cd03823 300 ELVRD------GVNG-LLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPR 344 (359)
T ss_pred HHhcC------CCcE-EEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhh
Confidence 53322 3344 444 5689999999999999999999999888754
No 154
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.39 E-value=7.8e-12 Score=128.22 Aligned_cols=256 Identities=16% Similarity=0.098 Sum_probs=161.4
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHH
Q 002729 179 FMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAIL 257 (887)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~ 257 (887)
++-.|+|.+++...+ ....++. .......+.+++..+|+++..+...... ..|...+...++..+...++.+.++.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHH
Confidence 444566666665444 1122221 1234455566666666666554433221 13344444555554444445555555
Q ss_pred HHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC
Q 002729 258 YYKQAIGCD--PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT 335 (887)
Q Consensus 258 ~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 335 (887)
.++..+... +.+.......|.++...|++++|++.+.+. .+.+.......++.+.++++.|.+.++.+.+.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555444221 123334455566666777777777776543 4566666777778888888888888887777766
Q ss_pred CCchhHhhHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729 336 GLSAPFNNLAVIYKQQG--NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLA 413 (887)
Q Consensus 336 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 413 (887)
+...+....+.+....| ++.+|...|+++.+..+.++..+..++.++..+|++++|.+.++++++.+|++++++.+++
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 55544444455555544 5888888888888877788888888899999999999999999999888899999888998
Q ss_pred HHHHhCCCH-HHHHHHHHHHHHcCCCChHH
Q 002729 414 SAYKDSGHV-EAAIKSYKQALLLRPDFPEA 442 (887)
Q Consensus 414 ~~~~~~g~~-~~A~~~~~~al~~~p~~~~~ 442 (887)
.+....|+. +.+.+++.++...+|+++-.
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 888888887 66777888888888887644
No 155
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.39 E-value=3e-11 Score=130.57 Aligned_cols=283 Identities=12% Similarity=-0.000 Sum_probs=170.7
Q ss_pred ceeeeecCCCC------CChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcC--ceEE--CC----CCCHH
Q 002729 537 LRVGYVSSDFG------NHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAE--HFVD--VS----AMSSD 602 (887)
Q Consensus 537 lriGyvs~d~~------~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~----~~~~~ 602 (887)
+||.+|+..+. ..-+..++..+.+.+.+.++||+++......... ....... .+.. .. .....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAA---PLVPVVPEPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCccc---ceeeccCCCcccccchhhHhhHHHHH
Confidence 47888887762 2233367778888888888999998865432111 0111111 1110 00 01124
Q ss_pred HHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCC------CcccEEEecCccCCCCcCCCC---c
Q 002729 603 MIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGA------SYIDYLVTDEFVSPLRYAHIY---S 673 (887)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~------~~~d~~~~d~~~~p~~~~~~~---~ 673 (887)
.+.+.++..++||++-.+...... +...+..|+.++..+.+..... ...|.+++ ++...... .
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~~~---~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~-----~s~~~~~~~~~~ 149 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLPLP---FARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVS-----ISDAQRRPWPPL 149 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccchh---hhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEE-----ecHHHHhhcccc
Confidence 567888889999996433332211 2334556877776655442221 12222322 22211111 0
Q ss_pred cceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh
Q 002729 674 EKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA 753 (887)
Q Consensus 674 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~ 753 (887)
.++..+|++.....++ + .+. +...++|.+.-...|..+.++++.. .++.+|+++|.++.
T Consensus 150 ~~~~vi~ngvd~~~~~--------~--~~~------~~~~i~~~Gr~~~~Kg~~~li~~~~-----~~~~~l~i~G~~~~ 208 (335)
T cd03802 150 PWVATVHNGIDLDDYP--------F--RGP------KGDYLLFLGRISPEKGPHLAIRAAR-----RAGIPLKLAGPVSD 208 (335)
T ss_pred cccEEecCCcChhhCC--------C--CCC------CCCEEEEEEeeccccCHHHHHHHHH-----hcCCeEEEEeCCCC
Confidence 4566666644321111 1 000 1223444444456798888888653 25789999997764
Q ss_pred hHHHHHHHHHHcC-CCCCcEEEcCCCCcHHHHHhccCCcEEecCCC--CCCchhHHHHHHhCCceeeecccchhhhhHHH
Q 002729 754 GEMRLRAYAVAQG-VQPDQIIFTDVAMKQEHIRRSSLADLFLDTPL--CNAHTTGTDILWAGLPMITLPLEKMATRVAGS 830 (887)
Q Consensus 754 ~~~~l~~~~~~~g-~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~--~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~ 830 (887)
...+........ + .++|+|.|.++..+....++.+|+++-|.. .+.|++++|||+||+|||+.......+-+..
T Consensus 209 -~~~~~~~~~~~~~~-~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~- 285 (335)
T cd03802 209 -PDYFYREIAPELLD-GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVED- 285 (335)
T ss_pred -HHHHHHHHHHhccc-CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeC-
Confidence 444444444443 4 588999999999999999999999999865 3449999999999999998877666665443
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 002729 831 LCLATGLGEEMIVNSMKEYEERAVSLALDR 860 (887)
Q Consensus 831 ~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~ 860 (887)
|.++ +++++.+++++....+..+.
T Consensus 286 -----~~~g-~l~~~~~~l~~~l~~l~~~~ 309 (335)
T cd03802 286 -----GVTG-FLVDSVEELAAAVARADRLD 309 (335)
T ss_pred -----CCcE-EEeCCHHHHHHHHHHHhccH
Confidence 5567 77777999988888876543
No 156
>PLN02939 transferase, transferring glycosyl groups
Probab=99.39 E-value=7.4e-12 Score=142.66 Aligned_cols=164 Identities=12% Similarity=0.008 Sum_probs=119.5
Q ss_pred CCCCCCCCC---CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh--hHHHHHHHHHHcCCCCCcEEEc
Q 002729 703 KRSDYGLPE---DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQPDQIIFT 775 (887)
Q Consensus 703 ~r~~~~l~~---~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~~~r~~~~ 775 (887)
.|.++||+. +.++||+++|+ .|..+.+++++.+++. ++.+|+|+|.|+. ....++..+...|+ .++|.|.
T Consensus 766 LRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l-~drV~Fl 842 (977)
T PLN02939 766 LRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQS-NNNIRLI 842 (977)
T ss_pred HHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCC-CCeEEEE
Confidence 678899984 56899999997 4999999999998875 5789999998753 24677888888898 6899999
Q ss_pred CCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHH---HHHHhcCCCCcccc--CCHHHH
Q 002729 776 DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAG---SLCLATGLGEEMIV--NSMKEY 849 (887)
Q Consensus 776 ~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~---~~l~~~g~~~~~~~--~~~~~y 849 (887)
|..+...-...|..+|+||-|+-+.+ |.|.+|||++|+|+|+..-.....-|.. ..+..-|-++ ++. .|++++
T Consensus 843 G~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NG-fLf~~~D~eaL 921 (977)
T PLN02939 843 LKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNG-FTFLTPDEQGL 921 (977)
T ss_pred eccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCce-EEecCCCHHHH
Confidence 98776655678999999999988888 9999999999988775433223222110 0000013344 443 578887
Q ss_pred HHHHHHHh----cCHHHHHHHHHHH
Q 002729 850 EERAVSLA----LDRQKLQALTNKL 870 (887)
Q Consensus 850 ~~~a~~l~----~d~~~~~~~~~~~ 870 (887)
.+...++. .|++.+.+++.+.
T Consensus 922 a~AL~rAL~~~~~dpe~~~~L~~~a 946 (977)
T PLN02939 922 NSALERAFNYYKRKPEVWKQLVQKD 946 (977)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHH
Confidence 76655543 4899888887653
No 157
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.39 E-value=4.2e-12 Score=126.59 Aligned_cols=307 Identities=21% Similarity=0.251 Sum_probs=145.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHH
Q 002729 73 MANAWKEKGDIDLAIRYYLVAIELRPNFA----DAWSNLASAYMRKGRLNEAAQCCRQALAL------NPLLVDAHSNLG 142 (887)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la 142 (887)
-|.-+++.|++...+.+|+.+++...++. .+|..+|.+|+..++|++|+++-.-=+.+ .-......-++|
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 35566677777777777777777655542 24556666666666666666654322211 111223344556
Q ss_pred HHHHHcCChHHHHHHHHHHHhhC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002729 143 NLMKAQGLVQEAYSCYLEALRIQ------PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (887)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 216 (887)
+.+...|.+++|+.+..+-+... -....++++++.+|...|+--....-- +....+.++.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh----hcccccHHHH----------
Confidence 66666666666665555444321 111233444444444333211000000 0000000000
Q ss_pred CChHHHHHHHHHHHhhCC-------ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHc
Q 002729 217 GMPQEAIMCYQRAVQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPR------FLEAYNNLGNALKDV 283 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~ 283 (887)
..++.|.++|..-+++.. ...++-++|..|+-.|+++.|+..-+.-+.+... .-.++.++|+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 001222333332222211 1334444555555555555555444443322111 112444455555555
Q ss_pred CCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccC--CCchhHhhHHHHHHHcCCHHHHHHHH
Q 002729 284 GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTT--GLSAPFNNLAVIYKQQGNYADAISCY 361 (887)
Q Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 361 (887)
|+++.|+++|++.+.+. +++.. ..+...+.+|..|.-..++++|+.++
T Consensus 249 g~fe~A~ehYK~tl~LA------------------------------ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh 298 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLA------------------------------IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYH 298 (639)
T ss_pred cccHhHHHHHHHHHHHH------------------------------HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55555555554443221 01111 12233455666666666677777666
Q ss_pred HHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-cHHHHHHHHHHHHhCCCHH
Q 002729 362 NEVLRIDP------LAADGLVNRGNTYKEIGRVTDAIQDYIRAITIR-----PT-MAEAHANLASAYKDSGHVE 423 (887)
Q Consensus 362 ~~al~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~ 423 (887)
++-+.+.. ....+++.+|..+..+|..++|+.+.++.+++. +. ...+..++...-...|..+
T Consensus 299 ~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 299 QRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 66555421 234567777788888888777777777666542 22 2345566666666666554
No 158
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.38 E-value=1.6e-11 Score=131.90 Aligned_cols=219 Identities=17% Similarity=0.153 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHH
Q 002729 169 AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYE 248 (887)
Q Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~ 248 (887)
......++..+...|-...|+..+++. ..|-....+|...|+..+|..+..+-++..|+...|..+|.+..+
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 344556677777777777777777653 445556677777777777777777777766666666666666666
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHH
Q 002729 249 RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYK 328 (887)
Q Consensus 249 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 328 (887)
..-+++|.++.+.. +..+...+|......++++++.++++..++++|-....|+.+|.+..+.++++.|.+.|.
T Consensus 470 ~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 470 PSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 65566665555443 223555556666666777777777777777777777777777777777777777777777
Q ss_pred HHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 329 ATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (887)
Q Consensus 329 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (887)
..+...|++..+|++++..|.+.|+-.+|...++++++.+-.+...|-+.-.+..+.|.+++|++.+.+.+.+
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 7777777777777777777777777777777777777777666777777777777777777777777776655
No 159
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.38 E-value=3.3e-12 Score=141.14 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=124.9
Q ss_pred CCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEc-C
Q 002729 703 KRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFT-D 776 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~-~ 776 (887)
.|.++|++++.+++++++++ .|..+.+++++.++. ++.+++++|.++. ..+.+++.+...+...++|+|. |
T Consensus 191 ~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (388)
T TIGR02149 191 VLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINK 267 (388)
T ss_pred HHHHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecC
Confidence 46778888888888888886 488999999998763 4677887765443 2356677777777765677765 6
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCH------H
Q 002729 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSM------K 847 (887)
Q Consensus 777 ~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~------~ 847 (887)
.++.++...+|..+|++|-|+.+.| |++++|||++|+|||+.......+-+.. |..+ ++. .+. +
T Consensus 268 ~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~------~~~G-~~~~~~~~~~~~~~~ 340 (388)
T TIGR02149 268 MLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPEVVVD------GETG-FLVPPDNSDADGFQA 340 (388)
T ss_pred CCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC------CCce-EEcCCCCCcccchHH
Confidence 7889999999999999999977777 9999999999999998766555543321 4445 444 344 7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 848 EYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 848 ~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
++.+....+..|++.++++++..++..
T Consensus 341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 341 ELAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 899999999999999999988877654
No 160
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.36 E-value=1.2e-10 Score=132.88 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=136.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc
Q 002729 259 YKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338 (887)
Q Consensus 259 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 338 (887)
+.......|.+.+++..||.+....|.+++|...++.+++..|++..+...++.++.+.+++++|+..+++++...|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 33334567888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002729 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409 (887)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (887)
..++.+|.++.+.|++++|+.+|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998875544443
No 161
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.35 E-value=2.5e-11 Score=133.16 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=119.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEE
Q 002729 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (887)
Q Consensus 714 ~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ 793 (887)
++|.+--...|..+.+++++.++....|+.+|.|+|.++. ...+.......++ .++|.|.|. ..+....|+.+|++
T Consensus 207 i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~-~~~v~~~g~--~~~~~~~~~~ad~~ 282 (372)
T cd04949 207 IITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDE-EEKLKELIEELGL-EDYVFLKGY--TRDLDEVYQKAQLS 282 (372)
T ss_pred EEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCch-HHHHHHHHHHcCC-cceEEEcCC--CCCHHHHHhhhhEE
Confidence 3333333457999999999999999999999999998776 5677777888898 689999994 34567789999999
Q ss_pred ecCCCCCC-chhHHHHHHhCCceeeeccc-chhhhhHHHHHHhcCCCCccccC--CHHHHHHHHHHHhcCHHHHHHHHHH
Q 002729 794 LDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN--SMKEYEERAVSLALDRQKLQALTNK 869 (887)
Q Consensus 794 ld~~~~~g-~~t~~eal~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~--~~~~y~~~a~~l~~d~~~~~~~~~~ 869 (887)
++|..++| |.+.+|||++|+|||+.... ...+-+ .=|.++ ++++ |.+++.+....+.+|++.++.+++.
T Consensus 283 v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v------~~~~~G-~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~ 355 (372)
T cd04949 283 LLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEII------EDGENG-YLVPKGDIEALAEAIIELLNDPKLLQKFSEA 355 (372)
T ss_pred EecccccccChHHHHHHhCCCCEEEecCCCCcHHHc------ccCCCc-eEeCCCcHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99987776 99999999999999986532 222211 115666 6665 9999999999999999999999998
Q ss_pred HHhh
Q 002729 870 LKSV 873 (887)
Q Consensus 870 ~~~~ 873 (887)
.++.
T Consensus 356 a~~~ 359 (372)
T cd04949 356 AYEN 359 (372)
T ss_pred HHHH
Confidence 8865
No 162
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.35 E-value=3e-07 Score=101.96 Aligned_cols=449 Identities=14% Similarity=0.099 Sum_probs=269.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002729 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (887)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (887)
.-....+++.+|++...+++++.|+...+....|.++.++|+.++|..+++..-...+++..++..+-.+|..+|++++|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 34677899999999999999999999999999999999999999999888887777788889999999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChH---------HHHH
Q 002729 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMK-AQGLVQ---------EAYS 156 (887)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~---------~A~~ 156 (887)
..+|+++...+|+ .+....+-.+|.+.++|.+-.+.--++.+..|+++..+.....+.. .....+ -|..
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999999999 8888999999999999988777777777788887765444444333 333222 3455
Q ss_pred HHHHHHhhC-CChHH-HHHHHHHHHHHcCCHHHHHHHHHHH-Hh-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729 157 CYLEALRIQ-PTFAI-AWSNLAGLFMESGDLNRALQYYKEA-VK-LKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (887)
Q Consensus 157 ~~~~al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~-l~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (887)
..++.++.. +-... -....-.++..+|++++|.+.+..- .+ ..+.+..........+...+++.+-.++..+++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 556666554 21111 1222334566789999999998432 23 33444555566778888899999999999999988
Q ss_pred CCCh-hHH----hhH---------HHHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729 233 RPNA-IAF----GNL---------ASTYYERGQADMAILYYKQAIGCDPRFL-EAYNNLGNALKDVGRVDEAIQCYNQCL 297 (887)
Q Consensus 233 ~p~~-~~~----~~l---------a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al 297 (887)
.++. ..+ ..+ +..+...+..+..++..++.++.....+ -++..+-.-+...|+.+++...|-+-.
T Consensus 256 ~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 256 GNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred CCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 7773 121 111 1112222344445555555554422222 123333333345577777665554332
Q ss_pred hcCCCC------------hHH------------------------HHhHHHHHHHcCChh-----HHHHHHHHHH-----
Q 002729 298 SLQPSH------------PQA------------------------LTNLGNIYMEWNMLP-----AAASYYKATL----- 331 (887)
Q Consensus 298 ~~~p~~------------~~~------------------------~~~l~~~~~~~g~~~-----~A~~~~~~~~----- 331 (887)
-..|-. +.- +...-.+....|.+. .-..++++..
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~ 415 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEK 415 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhc
Confidence 221110 000 000111111122111 1111221111
Q ss_pred --hcc----CC---CchhH-----hhHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002729 332 --AVT----TG---LSAPF-----NNLAVIYKQQGN---YADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQD 394 (887)
Q Consensus 332 --~~~----~~---~~~~~-----~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 394 (887)
+.. |. ....+ +.+...+.+.++ .-+|+.+++..+..+|.+...-..+..+|.-.|-+..|.+.
T Consensus 416 gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~ 495 (932)
T KOG2053|consen 416 GLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYEL 495 (932)
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHH
Confidence 110 10 11111 223344444443 34666666666666777776666666666666777666666
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCCh
Q 002729 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSW 456 (887)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 456 (887)
|...--.+-.....-+.+-..+...|++.-+...+...+...-++-.-...++......|.+
T Consensus 496 y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~y 557 (932)
T KOG2053|consen 496 YKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAY 557 (932)
T ss_pred HHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCch
Confidence 65432111111112233344445556666666666666666544444444444444444443
No 163
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.35 E-value=1e-11 Score=135.97 Aligned_cols=309 Identities=10% Similarity=0.085 Sum_probs=178.8
Q ss_pred eeeeecCCCCCCh---hHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCC----------CHHHH
Q 002729 538 RVGYVSSDFGNHP---LSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM----------SSDMI 604 (887)
Q Consensus 538 riGyvs~d~~~h~---~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 604 (887)
||.++++++.-+. +..++..+.+.+.+.++||.+++........ ...... . +++.+... ....+
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~-~~~~~~-i-~~~~~~~~~~~~~~~~~~~~~~~ 77 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPYPKQK-ETEYNG-V-RLIHIPAPEIGGLGTIIYDILAI 77 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCCCCc-ccccCC-c-eEEEcCCCCccchhhhHHHHHHH
Confidence 5788876643222 2356777788888888898888765433221 000111 1 11111110 01112
Q ss_pred HHHH-HhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCC---CCCc---------ccEEEecCccCCCCcCC-
Q 002729 605 AKLI-NEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT---GASY---------IDYLVTDEFVSPLRYAH- 670 (887)
Q Consensus 605 ~~~i-~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~---g~~~---------~d~~~~d~~~~p~~~~~- 670 (887)
...+ ...++|+++.....+ ..-..++..+..|+.++.-|..-.. +... .-+..+|.++.++....
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 156 (363)
T cd04955 78 LHALFVKRDIDHVHALGPAI-APFLPLLRLKGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKE 156 (363)
T ss_pred HHHHhccCCeEEEEecCccH-HHHHHHHHhcCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHHH
Confidence 2222 256788887655443 1112334445678888765542111 0000 01123344444443221
Q ss_pred ----CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCce
Q 002729 671 ----IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNSA 744 (887)
Q Consensus 671 ----~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~ 744 (887)
.|..+...+|++...... .+ ....+..++++++.+ ++++++ ..|..+.+++++.++.. +.+
T Consensus 157 ~~~~~~~~~~~~i~ngv~~~~~--------~~-~~~~~~~~~~~~~~~-i~~~G~~~~~Kg~~~li~a~~~l~~---~~~ 223 (363)
T cd04955 157 YLKEKYGRDSTYIPYGADHVVS--------SE-EDEILKKYGLEPGRY-YLLVGRIVPENNIDDLIEAFSKSNS---GKK 223 (363)
T ss_pred HHHHhcCCCCeeeCCCcChhhc--------ch-hhhhHHhcCCCCCcE-EEEEecccccCCHHHHHHHHHhhcc---Cce
Confidence 122222445543221110 00 011233455544432 334444 46999999999987643 689
Q ss_pred EEEecCChhhHHHHHHHHH-HcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCC-CC-chhHHHHHHhCCceeeeccc
Q 002729 745 LWLLRFPAAGEMRLRAYAV-AQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLE 821 (887)
Q Consensus 745 l~~~~~~~~~~~~l~~~~~-~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~-~g-~~t~~eal~~gvPvvt~~g~ 821 (887)
|+++|.++. ...+.+.+. ..+. .++|+|.|.++.++....+..+|+++-|... +| |++++|||++|+||||-...
T Consensus 224 l~ivG~~~~-~~~~~~~~~~~~~~-~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 224 LVIVGNADH-NTPYGKLLKEKAAA-DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred EEEEcCCCC-cchHHHHHHHHhCC-CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 999997654 334444444 5677 5889999999999999999999999999666 66 99999999999999987655
Q ss_pred chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 822 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 822 ~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
...+-+. -.+ ++....+.+.+...++.+|++.+.+++.+.++..
T Consensus 302 ~~~e~~~--------~~g-~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 345 (363)
T cd04955 302 FNREVLG--------DKA-IYFKVGDDLASLLEELEADPEEVSAMAKAARERI 345 (363)
T ss_pred ccceeec--------CCe-eEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4444332 233 4444445588999999999999999988887654
No 164
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.34 E-value=1.1e-11 Score=137.90 Aligned_cols=258 Identities=11% Similarity=0.064 Sum_probs=155.1
Q ss_pred CHHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCC-------------CCCcccEEEecCccCCC
Q 002729 600 SSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTT-------------GASYIDYLVTDEFVSPL 666 (887)
Q Consensus 600 ~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~-------------g~~~~d~~~~d~~~~p~ 666 (887)
....+.+.|+..++||++-.....-.+-+.....+..|+.++.-.....+ -...+|.+++ ++
T Consensus 112 ~~~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~-----~S 186 (425)
T PRK05749 112 LPGAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLA-----QS 186 (425)
T ss_pred cHHHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEE-----CC
Confidence 35788888999999999865444333333333445678776421111100 0123455444 32
Q ss_pred CcCCC-------CccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCCCCCHHHHHHHHHHHhh
Q 002729 667 RYAHI-------YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRR 739 (887)
Q Consensus 667 ~~~~~-------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~k~~~~~~~~~~~il~~ 739 (887)
+.... -.+ +..+|+..+...+. +.........|..++ ++ ..++++.++..|....++++|.++++.
T Consensus 187 ~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~----~~~~~~~~~~r~~~~-~~-~~vil~~~~~~~~~~~ll~A~~~l~~~ 259 (425)
T PRK05749 187 EEDAERFLALGAKNE-VTVTGNLKFDIEVP----PELAARAATLRRQLA-PN-RPVWIAASTHEGEEELVLDAHRALLKQ 259 (425)
T ss_pred HHHHHHHHHcCCCCC-cEecccccccCCCC----hhhHHHHHHHHHHhc-CC-CcEEEEeCCCchHHHHHHHHHHHHHHh
Confidence 22111 112 44455421110000 000000011344555 43 344444556667778889999999988
Q ss_pred cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCC------------CcHHHHHhccCCcEEec-C-CCCCCchhH
Q 002729 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA------------MKQEHIRRSSLADLFLD-T-PLCNAHTTG 805 (887)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~------------~~~~~~~~~~~~d~~ld-~-~~~~g~~t~ 805 (887)
.|+.+|+|+|.++...+.+++.+++.|+. .+.|.+.. ...+...+|+.+||++- + +..+||.+.
T Consensus 260 ~~~~~liivG~g~~r~~~l~~~~~~~gl~--~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 260 FPNLLLILVPRHPERFKEVEELLKKAGLS--YVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CCCcEEEEcCCChhhHHHHHHHHHhCCCc--EEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCH
Confidence 99999999998876346899999999984 24443311 23578889999999543 3 445679999
Q ss_pred HHHHHhCCceeeeccc-chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729 806 TDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 806 ~eal~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~ 875 (887)
+|||++|+|||+-+.. .+.+- ...+...|. - +...|.+++.+....|.+|++.++++.++.++...
T Consensus 338 lEAma~G~PVI~g~~~~~~~e~--~~~~~~~g~-~-~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~ 404 (425)
T PRK05749 338 LEPAAFGVPVISGPHTFNFKEI--FERLLQAGA-A-IQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLK 404 (425)
T ss_pred HHHHHhCCCEEECCCccCHHHH--HHHHHHCCC-e-EEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999999974321 12221 112222243 1 23488999999999999999999999998887653
No 165
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.32 E-value=3.7e-11 Score=132.81 Aligned_cols=161 Identities=14% Similarity=0.079 Sum_probs=125.1
Q ss_pred CCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHH
Q 002729 705 SDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQE 782 (887)
Q Consensus 705 ~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~ 782 (887)
...+.+.+.++++++++. .|..+.+++++.++... |+.+|+++|.++. ...+.+.....+. ++|.|.|.++.++
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~~~-~~~~~~~~~~~~~--~~v~~~g~~~~~~ 287 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDGPE-KEELKELAKALGL--DNVTFLGRVPKEE 287 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCccc-HHHHHHHHHHcCC--CcEEEeCCCChHH
Confidence 334455667777777776 68899999999998877 8999999997765 5566666666665 6799999999999
Q ss_pred HHHhccCCcEEecCCCCCC------chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHH
Q 002729 783 HIRRSSLADLFLDTPLCNA------HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVS 855 (887)
Q Consensus 783 ~~~~~~~~d~~ld~~~~~g------~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-~~~~~y~~~a~~ 855 (887)
....|..+|+++-|...++ +++++|||++|+|||+........-+.. |-.+.++. .|.+++++...+
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~------~~~g~~~~~~~~~~l~~~i~~ 361 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEE------AGAGLVVPPGDPEALAAAILE 361 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhcc------CCcceEeCCCCHHHHHHHHHH
Confidence 9999999999998866553 4558999999999999877665553322 22231333 489999999999
Q ss_pred HhcCHHHHHHHHHHHHhhcc
Q 002729 856 LALDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 856 l~~d~~~~~~~~~~~~~~~~ 875 (887)
+..|++.+++++++.++...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 362 LLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred HHhChHHHHHHHHHHHHHHH
Confidence 99999999999988876543
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.32 E-value=5.1e-11 Score=122.26 Aligned_cols=254 Identities=15% Similarity=0.121 Sum_probs=110.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 6 AHQMYKSGSYKQALEHSNSVYERNP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (887)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (887)
.+.+|-.|+|.+++...+ ....++ ...+....+.+++..+|+++..+..... ..+....+...++..+...++-+
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchH
Confidence 445566677777766555 222222 2344555666666666666655443322 11222333344444443333444
Q ss_pred HHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002729 85 LAIRYYLVAIELR--PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 85 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
.++..++..+... +.++......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++.+.
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444333221 123333444445555555555555555432 334444445555555555555555555554
Q ss_pred hhCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHH
Q 002729 163 RIQPTFAIAWSNLAGLFMESG--DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAF 239 (887)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 239 (887)
+.+.+...+....+.+....| ++.+|..+|+++.+..+.++..++.++.++..+|++++|.+.++++++.+|+ ..++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 444444333333333333332 3444444444444444444444444444444444444444444444444433 3344
Q ss_pred hhHHHHHHHcCCh-HHHHHHHHHHHhcCCC
Q 002729 240 GNLASTYYERGQA-DMAILYYKQAIGCDPR 268 (887)
Q Consensus 240 ~~la~~~~~~g~~-~~A~~~~~~~l~~~p~ 268 (887)
.+++.+....|+. +.+.+++.++...+|+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 4444444444433 3333333333333443
No 167
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.31 E-value=4.9e-11 Score=109.39 Aligned_cols=118 Identities=20% Similarity=0.248 Sum_probs=100.8
Q ss_pred HHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 325 SYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
..|++++..+|++......++..+...|++++|+..++++++.+|.++.++..+|.++...|++++|...++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777888887778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHH
Q 002729 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (887)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (887)
++..++.+|.++...|++++|+..|+++++++|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888899999999999988888877653
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.3e-11 Score=118.12 Aligned_cols=109 Identities=32% Similarity=0.483 Sum_probs=98.8
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (887)
+..-|.-+.+.++|.+|+..|.++++++|.++..|.+++.+|.++|.++.|++.++.++.++|....+|..||.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44557778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 002729 421 HVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (887)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (887)
++++|++.|+++++++|++.....+|-.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 99999999999999999998776665443
No 169
>PLN02316 synthase/transferase
Probab=99.30 E-value=2.3e-11 Score=141.60 Aligned_cols=169 Identities=12% Similarity=-0.036 Sum_probs=115.7
Q ss_pred CCCCCCCCC-CcEEEEecCCCC--CCCHHHHHHHHHHHhhcCCceEEEecCChhh--HHHHHHHHHHcCCC-CCcEEEcC
Q 002729 703 KRSDYGLPE-DKFIFACFNQLY--KMDPEIFNTWCNILRRVPNSALWLLRFPAAG--EMRLRAYAVAQGVQ-PDQIIFTD 776 (887)
Q Consensus 703 ~r~~~~l~~-~~~~~~~~~~~~--k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~l~~~~~~~g~~-~~r~~~~~ 776 (887)
.|.++||+. +.+++++++|+. |-.+.+++++.++++ ++.+|+|+|.||.. +..+++.+.++|+. ++||.|.+
T Consensus 829 Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g 906 (1036)
T PLN02316 829 LQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCL 906 (1036)
T ss_pred HHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEe
Confidence 467899984 678999999984 899999999999986 47899999977542 46788888888874 68999987
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHH-------HHHhcCCCCcccc--CCH
Q 002729 777 VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGS-------LCLATGLGEEMIV--NSM 846 (887)
Q Consensus 777 ~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~-------~l~~~g~~~~~~~--~~~ 846 (887)
..+...-..+|+.+|+||-|+-+.+ |+|.+|||++|+|+|+.....++.-|... -....|-++ ++. .|+
T Consensus 907 ~~de~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG-flf~~~d~ 985 (1036)
T PLN02316 907 TYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG-FSFDGADA 985 (1036)
T ss_pred cCCHHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce-EEeCCCCH
Confidence 6543322368999999999988888 99999999999866643333333322110 000012344 444 367
Q ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHhhc
Q 002729 847 KEYEERAVSLALD-RQKLQALTNKLKSVR 874 (887)
Q Consensus 847 ~~y~~~a~~l~~d-~~~~~~~~~~~~~~~ 874 (887)
+++.....++..+ .+.+..+++..+..+
T Consensus 986 ~aLa~AL~raL~~~~~~~~~~~~~~r~~m 1014 (1036)
T PLN02316 986 AGVDYALNRAISAWYDGRDWFNSLCKRVM 1014 (1036)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 7777766666654 344444455554443
No 170
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.28 E-value=9.8e-11 Score=127.27 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=105.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
..++|.+.-...|..+.+++++.++ | .+|+|+|.++. .+.+++ +. .++|.|.|.++.++...+|..+|
T Consensus 196 ~~il~~G~~~~~K~~~~li~a~~~~----~-~~l~ivG~g~~-~~~l~~-----~~-~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 196 DYYLSVGRLVPYKRIDLAIEAFNKL----G-KRLVVIGDGPE-LDRLRA-----KA-GPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred CEEEEEEcCccccChHHHHHHHHHC----C-CcEEEEECChh-HHHHHh-----hc-CCCEEEecCCCHHHHHHHHHhCC
Confidence 3455555555679999999988653 5 78999998765 445544 44 58999999999999999999999
Q ss_pred EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCH-HHHHHHHHH
Q 002729 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDR-QKLQALTNK 869 (887)
Q Consensus 792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-~~~~~y~~~a~~l~~d~-~~~~~~~~~ 869 (887)
+++-|...+-|++.+|||+||+|||+.......+-+.. |-.+.++. .|.+++++....+.+|+ ..++++++.
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~------~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~ 337 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGGALETVID------GVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAH 337 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCCCcceeeC------CCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHH
Confidence 99999774449999999999999998765444442221 33441332 68899999999999988 555666555
Q ss_pred HH
Q 002729 870 LK 871 (887)
Q Consensus 870 ~~ 871 (887)
.+
T Consensus 338 ~~ 339 (351)
T cd03804 338 AE 339 (351)
T ss_pred HH
Confidence 43
No 171
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=1.1e-10 Score=106.92 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=84.0
Q ss_pred HHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002729 21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (887)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (887)
.+++++..+|++....+.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 002729 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136 (887)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 136 (887)
+..++.+|.++...|++++|+..++++++.+|++..
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 777777777777777777777777777777766554
No 172
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.28 E-value=3.8e-11 Score=134.99 Aligned_cols=161 Identities=13% Similarity=0.152 Sum_probs=125.0
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729 710 PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (887)
Q Consensus 710 ~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~ 784 (887)
+.+.++++.++++ .|..+.+++++..+.+..|+.+|+|+|.++. ..+.+++.+++.|+ .++|.|.| ..+..
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G---~~~v~ 365 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTG---FQNVK 365 (475)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcC---CccHH
Confidence 3455777777776 5889999999999999999999999997642 24577888899999 69999999 45667
Q ss_pred HhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002729 785 RRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (887)
Q Consensus 785 ~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~ 861 (887)
.+|+.+|+++-|+-..| |++++|||++|+|||+-....+.+-+...--...|-.+ ++. .|.+++.+...++.+|++
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~~~~~~g~~G-~lv~~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVGSCRELIEGADDEALGPAG-EVVPPADPEALARAILRLLKDPE 444 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCCChHHHhcCCcccccCCce-EEECCCCHHHHHHHHHHHhcCHH
Confidence 77899999999976666 99999999999999986554444432210000123455 444 689999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 002729 862 KLQALTNKLKSVRL 875 (887)
Q Consensus 862 ~~~~~~~~~~~~~~ 875 (887)
.++++++..+++..
T Consensus 445 ~~~~~~~~a~~~v~ 458 (475)
T cd03813 445 LRRAMGEAGRKRVE 458 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887654
No 173
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.27 E-value=1e-10 Score=128.31 Aligned_cols=248 Identities=13% Similarity=0.058 Sum_probs=143.6
Q ss_pred HHHHHHHHhCCCeEEEecCCcCCCCchhhh-hcC--CCceEE--eccccCCCCCCCcccEEEecCccCCCC--cCCCCcc
Q 002729 602 DMIAKLINEDKIQILINLNGYTKGARNEIF-AMQ--PAPIQV--SYMGFPGTTGASYIDYLVTDEFVSPLR--YAHIYSE 674 (887)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~~~-~~r--~apvq~--~~~g~~~t~g~~~~d~~~~d~~~~p~~--~~~~~~e 674 (887)
..+.+.|++.++||+|-..+.. ..+.+ +.+ .-|+-. |.+|.+...-.+..|.+++-.-..-.. ..+...+
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~---~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s~~~~~~l~~~gi~~~ 170 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII---AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVATDHVKKVLVDIGVPPE 170 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH---HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECCHHHHHHHHHcCCChh
Confidence 5678899999999998432221 12222 222 245542 223333333345666665521100000 0112234
Q ss_pred ceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCc-EEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecC-
Q 002729 675 KLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDK-FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRF- 750 (887)
Q Consensus 675 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~-~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~- 750 (887)
++..++..... .+. .+......|..+|++++. +++...++. .|....+++.+. ..|+.+++++++
T Consensus 171 ki~v~G~p~~~-~f~------~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~----~~~~~~~viv~G~ 239 (380)
T PRK13609 171 QVVETGIPIRS-SFE------LKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLM----SVPDLQVVVVCGK 239 (380)
T ss_pred HEEEECcccCh-HHc------CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHh----hCCCcEEEEEeCC
Confidence 55544321100 000 001112256778997654 444433443 366666666553 348888877643
Q ss_pred ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHH
Q 002729 751 PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGS 830 (887)
Q Consensus 751 ~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~ 830 (887)
++...+.+++.....+ ++|+|.|.++ +...+|..+|+++. -+||.|++|||++|+|||+.....-.....+.
T Consensus 240 ~~~~~~~l~~~~~~~~---~~v~~~g~~~--~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~ 311 (380)
T PRK13609 240 NEALKQSLEDLQETNP---DALKVFGYVE--NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPGQEKENAM 311 (380)
T ss_pred CHHHHHHHHHHHhcCC---CcEEEEechh--hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCCcchHHHH
Confidence 3333567777666554 6899999875 34567889999983 46789999999999999985311111222223
Q ss_pred HHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 831 LCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 831 ~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
.+...|. . ++..+.++..+...++.+|++.+++++++.++.
T Consensus 312 ~~~~~G~-~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 312 YFERKGA-A-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSL 352 (380)
T ss_pred HHHhCCc-E-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 4444455 2 456899999999999999999999999888763
No 174
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.26 E-value=8.6e-11 Score=129.39 Aligned_cols=157 Identities=13% Similarity=0.117 Sum_probs=123.9
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc--eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHh
Q 002729 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS--ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRR 786 (887)
Q Consensus 711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~--~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~ 786 (887)
++.+++++++++ .|..+.+++++.++.+..|+. ++.++|.++. ...+++.++..+. .++|.|+|.++..+....
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~~-~~~l~~~~~~~~~-~~~V~f~G~v~~~e~~~~ 305 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGGPL-EDTLKELAESKPE-NISVNFTGELSNSEVYKL 305 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCchH-HHHHHHHHHhcCC-CceEEEecCCChHHHHHH
Confidence 345667777765 588999999999999988755 4566777765 6678888877777 689999999999998888
Q ss_pred ccC--CcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHHHHhcCHH
Q 002729 787 SSL--ADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAVSLALDRQ 861 (887)
Q Consensus 787 ~~~--~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~~l~~d~~ 861 (887)
|.. +|+++-|+.+.| |++++|||++|+|||+-......+-+.. |.++.++. .|.+++++...++..|++
T Consensus 306 ~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~------~~~G~l~~~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 306 YKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDN------GGNGLLLSKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred HhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcC------CCcEEEeCCCCCHHHHHHHHHHHHhCHH
Confidence 864 899999988888 9999999999999997654444443322 43451333 378999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 002729 862 KLQALTNKLKSVRL 875 (887)
Q Consensus 862 ~~~~~~~~~~~~~~ 875 (887)
.+.+|+++.|+...
T Consensus 380 ~~~~m~~~ar~~~~ 393 (407)
T cd04946 380 EYQTMREKAREKWE 393 (407)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888654
No 175
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.26 E-value=8.3e-11 Score=133.79 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=119.4
Q ss_pred CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-----------hHHHHHHHHHHcCCCC
Q 002729 705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQP 769 (887)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~ 769 (887)
..+|+ +.+.+++++.+|+ .|..+.++++|.++....+++.|+|+|+++. ...++++.+.+.|+ .
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~ 618 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-H 618 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-C
Confidence 45665 4566778888887 5999999999988765556789999986532 12467788899999 5
Q ss_pred CcEEEcCCC-CcHH---HHHhcc-CCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc
Q 002729 770 DQIIFTDVA-MKQE---HIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (887)
Q Consensus 770 ~r~~~~~~~-~~~~---~~~~~~-~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~ 843 (887)
++|.|+|.. +..+ ....+. .+|||+-|..+.+ |.|.+|||+||+|||+-......+-+.. |.++ ++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~d------g~tG-fLV 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQD------GVSG-FHI 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC------CCcE-EEe
Confidence 999999964 4433 343333 4689999988888 9999999999999996554444443321 6666 555
Q ss_pred --CCHHHHHHHHHHHh----cCHHHHHHHHHHHHhhc
Q 002729 844 --NSMKEYEERAVSLA----LDRQKLQALTNKLKSVR 874 (887)
Q Consensus 844 --~~~~~y~~~a~~l~----~d~~~~~~~~~~~~~~~ 874 (887)
.|.+++.+...++. .|++.+.+++.+.+++.
T Consensus 692 dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV 728 (784)
T TIGR02470 692 DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRI 728 (784)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 47888888877664 79999999998877653
No 176
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.25 E-value=7.1e-11 Score=130.29 Aligned_cols=148 Identities=8% Similarity=0.063 Sum_probs=108.1
Q ss_pred CCcEEEEecCC--CCCCCHHHH----HHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729 711 EDKFIFACFNQ--LYKMDPEIF----NTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (887)
Q Consensus 711 ~~~~~~~~~~~--~~k~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~ 784 (887)
.+.++++..++ ..|+.+.++ ++|..+.+..|+.+|+|+|.++. . . .++.+. .++|.|+|.++ +..
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~-~----~~~l~~-~~~V~~~G~v~--~~~ 292 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-P-A----VRALAA-LPGVTVTGSVA--DVR 292 (397)
T ss_pred CCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-H-H----HHHhcc-CCCeEEeeecC--CHH
Confidence 34445555555 468877776 67888888899999999998764 2 2 233444 46799999887 457
Q ss_pred HhccCCcEEecCCCC-CC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHH
Q 002729 785 RRSSLADLFLDTPLC-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQK 862 (887)
Q Consensus 785 ~~~~~~d~~ld~~~~-~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~ 862 (887)
.+|+.+|+++-|+.. +| +++++|||+||+|||+.... ...+...+-.+.++..|.+++++...++.+|++.
T Consensus 293 ~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~-------~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~ 365 (397)
T TIGR03087 293 PYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA-------AEGIDALPGAELLVAADPADFAAAILALLANPAE 365 (397)
T ss_pred HHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc-------cccccccCCcceEeCCCHHHHHHHHHHHHcCHHH
Confidence 788999999999753 44 77899999999999986531 0011111112315668999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 002729 863 LQALTNKLKSVR 874 (887)
Q Consensus 863 ~~~~~~~~~~~~ 874 (887)
+++++++.|+..
T Consensus 366 ~~~~~~~ar~~v 377 (397)
T TIGR03087 366 REELGQAARRRV 377 (397)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 177
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.25 E-value=8.8e-11 Score=136.30 Aligned_cols=159 Identities=10% Similarity=0.032 Sum_probs=123.1
Q ss_pred CCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhh--cCCceEEEecCChhh----------HHHHHHHHHHcCCCCCcE
Q 002729 707 YGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRR--VPNSALWLLRFPAAG----------EMRLRAYAVAQGVQPDQI 772 (887)
Q Consensus 707 ~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~--~p~~~l~~~~~~~~~----------~~~l~~~~~~~g~~~~r~ 772 (887)
++.+.+.+++++++|+ .|..+.+++++..+... .|+.+ +|+|.++.. ...+...+...|+ .++|
T Consensus 473 ~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V 550 (1050)
T TIGR02468 473 FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQV 550 (1050)
T ss_pred hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeE
Confidence 3445566677777776 59999999999988653 45555 345654321 2467788899999 6999
Q ss_pred EEcCCCCcHHHHHhccCC----cEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CC
Q 002729 773 IFTDVAMKQEHIRRSSLA----DLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NS 845 (887)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~----d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~ 845 (887)
.|.|..+..+...+|+.+ |||+-|..+.| |+|++|||+||+|||+-......+-+ .-|.++ +++ .|
T Consensus 551 ~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII------~~g~nG-lLVdP~D 623 (1050)
T TIGR02468 551 AYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH------RVLDNG-LLVDPHD 623 (1050)
T ss_pred EecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh------ccCCcE-EEECCCC
Confidence 999999999998999877 69999988888 99999999999999976544444322 125666 555 58
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 846 MKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 846 ~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.+++.+...++..|++.++++++..+++.
T Consensus 624 ~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 624 QQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887664
No 178
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.24 E-value=9.7e-11 Score=130.49 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=115.7
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 714 ~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
+++++++| ..|..+.++++|.++.+..|+.+|.|+|.++. .+.|++.+++.|+ .++|.|.|..+ ....|+.+|
T Consensus 320 ~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~-~~~l~~~i~~~~l-~~~V~f~G~~~---~~~~~~~ad 394 (500)
T TIGR02918 320 FSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGE-KQKLQKIINENQA-QDYIHLKGHRN---LSEVYKDYE 394 (500)
T ss_pred eEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchh-HHHHHHHHHHcCC-CCeEEEcCCCC---HHHHHHhCC
Confidence 34445555 46999999999999999999999999998876 6789999999999 68999999764 445678899
Q ss_pred EEecCCCCCC-chhHHHHHHhCCceeeeccc-chhhhhHHHHHHhcCCCCccccC------C----HHHHHHHHHHHhcC
Q 002729 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVN------S----MKEYEERAVSLALD 859 (887)
Q Consensus 792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~------~----~~~y~~~a~~l~~d 859 (887)
+++-|+-+.| |+|++|||++|+|||+..-. ..++-+. -|.++ +++. | .+++.+...+|.+
T Consensus 395 v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~------~g~nG-~lv~~~~~~~d~~~~~~~la~~I~~ll~- 466 (500)
T TIGR02918 395 LYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIE------DNKNG-YLIPIDEEEDDEDQIITALAEKIVEYFN- 466 (500)
T ss_pred EEEEcCccccccHHHHHHHHhCCCEEEecCCCCCHHHcc------CCCCE-EEEeCCccccchhHHHHHHHHHHHHHhC-
Confidence 9999987788 99999999999999986522 2333221 27777 6654 2 7788888888884
Q ss_pred HHHHHHHHHHHHhh
Q 002729 860 RQKLQALTNKLKSV 873 (887)
Q Consensus 860 ~~~~~~~~~~~~~~ 873 (887)
++.+.++++..++.
T Consensus 467 ~~~~~~~~~~a~~~ 480 (500)
T TIGR02918 467 SNDIDAFHEYSYQI 480 (500)
T ss_pred hHHHHHHHHHHHHH
Confidence 55688888888764
No 179
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=9.3e-11 Score=114.03 Aligned_cols=120 Identities=26% Similarity=0.385 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM 112 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 112 (887)
.+.+-.-|.-+.+.++|++|+..|.++|+++|.++..|.+++.+|.++|.++.|++..+.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 45566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 152 (887)
.+|++++|++.|+++++++|++......|..+-.+.++.+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999988888888777777666
No 180
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.24 E-value=2.5e-10 Score=124.77 Aligned_cols=253 Identities=12% Similarity=0.016 Sum_probs=154.0
Q ss_pred HHHHHHHHhCCCeEEEecCCcCCCCchh--hhh-c-----CCCceEEe---ccccCCCCCCCcccEEEecC-ccCCC-Cc
Q 002729 602 DMIAKLINEDKIQILINLNGYTKGARNE--IFA-M-----QPAPIQVS---YMGFPGTTGASYIDYLVTDE-FVSPL-RY 668 (887)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~--~~~-~-----r~apvq~~---~~g~~~t~g~~~~d~~~~d~-~~~p~-~~ 668 (887)
..+.+.|++.++||+|-. |...++.+ +++ + ...|+-++ ++..-.....+.+|++++-. .+... ..
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~~ 167 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRALK 167 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCcCcccccCCCCEEEECCHHHHHHHHH
Confidence 467889999999999852 33323322 222 1 24666433 11111123346778777521 11000 01
Q ss_pred CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHh----hcCC
Q 002729 669 AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKMDPEIFNTWCNILR----RVPN 742 (887)
Q Consensus 669 ~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~----~~p~ 742 (887)
.+...+++...|...-. .+. . ........|.++|++++.++++.+++. .|....+++.+..++. ..|+
T Consensus 168 ~g~~~~ki~v~g~~v~~-~f~----~-~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~ 241 (382)
T PLN02605 168 RGLEPSQIRVYGLPIRP-SFA----R-AVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPI 241 (382)
T ss_pred cCCCHHHEEEECcccCH-hhc----c-CCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCC
Confidence 12233566555432110 000 0 001122367889999887776666654 5778888888877652 2355
Q ss_pred ce-EEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeeccc
Q 002729 743 SA-LWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLE 821 (887)
Q Consensus 743 ~~-l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~ 821 (887)
.+ +++.|.++...+.|++ .+. .++|.|.|.++ +...+|+.+|+++.+ +||.|++|||++|+|||+..-.
T Consensus 242 ~~~~vi~G~~~~~~~~L~~----~~~-~~~v~~~G~~~--~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~ 311 (382)
T PLN02605 242 GQVVVICGRNKKLQSKLES----RDW-KIPVKVRGFVT--NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYI 311 (382)
T ss_pred ceEEEEECCCHHHHHHHHh----hcc-cCCeEEEeccc--cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCC
Confidence 54 5566655433344443 332 35799999985 567789999999963 3788999999999999987532
Q ss_pred chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhc
Q 002729 822 KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD-RQKLQALTNKLKSVR 874 (887)
Q Consensus 822 ~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d-~~~~~~~~~~~~~~~ 874 (887)
...+..++..+...|.. +...|+++..+...++..| ++.+++|++..++..
T Consensus 312 pgqe~gn~~~i~~~g~g--~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~ 363 (382)
T PLN02605 312 PGQEEGNVPYVVDNGFG--AFSESPKEIARIVAEWFGDKSDELEAMSENALKLA 363 (382)
T ss_pred CccchhhHHHHHhCCce--eecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22333344455555663 3458999999999999988 999999999888754
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.23 E-value=1.6e-10 Score=103.23 Aligned_cols=105 Identities=20% Similarity=0.151 Sum_probs=95.6
Q ss_pred hcc-CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729 332 AVT-TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHA 410 (887)
Q Consensus 332 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 410 (887)
... ++.-+..+.+|..+...|++++|.+.|+-+...+|.+...|+++|.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5556667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729 411 NLASAYKDSGHVEAAIKSYKQALLLR 436 (887)
Q Consensus 411 ~la~~~~~~g~~~~A~~~~~~al~~~ 436 (887)
++|.++...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998875
No 182
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.22 E-value=1.8e-06 Score=90.45 Aligned_cols=413 Identities=15% Similarity=0.099 Sum_probs=246.5
Q ss_pred HHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002729 23 NSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD 102 (887)
Q Consensus 23 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 102 (887)
++-++.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|...+......++|+.-.++|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 566788999999999999877666 9999999999999999999999999999999999999999999999875433 55
Q ss_pred HHHHHHHH-HHHcCChHHHHHHHHHH----HH---hCCCCHHHHHHHHHHHH---------HcCChHHHHHHHHHHHhhC
Q 002729 103 AWSNLASA-YMRKGRLNEAAQCCRQA----LA---LNPLLVDAHSNLGNLMK---------AQGLVQEAYSCYLEALRIQ 165 (887)
Q Consensus 103 ~~~~la~~-~~~~g~~~~A~~~~~~~----l~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~ 165 (887)
.|...... -...|+...+....-++ +. .++.....|...+..+. .+.+.+.-.+.|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 55544332 22344444433333333 22 24555556666655543 2335566677788887543
Q ss_pred CChH-HHHHHH-----------H--HHHHHcCCHHHHHHHHHHHHhh-------CCC----C-------HHHHHHHHHHH
Q 002729 166 PTFA-IAWSNL-----------A--GLFMESGDLNRALQYYKEAVKL-------KPT----F-------PDAYLNLGNVY 213 (887)
Q Consensus 166 p~~~-~~~~~l-----------a--~~~~~~g~~~~A~~~~~~~l~~-------~~~----~-------~~~~~~l~~~~ 213 (887)
-.+. ..|... | .+-.....|..|...+++.... +|. . .+.|.++...-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 2221 122211 1 1112233455666666555432 111 0 11333333332
Q ss_pred HHcCCh--------HHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCC--------------hHHHHHHHHHHHhc-CCCc
Q 002729 214 KALGMP--------QEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQ--------------ADMAILYYKQAIGC-DPRF 269 (887)
Q Consensus 214 ~~~g~~--------~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~-~p~~ 269 (887)
...+-- ....-.+++++...+- ++.|+..+..+...++ -+++..+|++++.. ...+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 222111 1122234444443332 4444443333333333 45666666666632 2223
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCh-HHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHH
Q 002729 270 LEAYNNLGNALKDVG---RVDEAIQCYNQCLSLQPSHP-QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLA 345 (887)
Q Consensus 270 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 345 (887)
...++.++..-...- +++..-..+++++.....++ -++..+...-.+..-.+.|..+|.++-+.......++..-|
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 334444444333222 25566666777666543333 35555566666666677777788777665433323333222
Q ss_pred HH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-cHHHHHHHHHHHHhCCC
Q 002729 346 VI-YKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI--RPT-MAEAHANLASAYKDSGH 421 (887)
Q Consensus 346 ~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~ 421 (887)
.+ |..+++.+-|...|+-.++..++.+..-......+..+++-..|...|++++.. .|+ ..++|..+...-..-|+
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 22 345677888888888888888888777777777778888888888888888776 332 34677777777777788
Q ss_pred HHHHHHHHHHHHHcCC
Q 002729 422 VEAAIKSYKQALLLRP 437 (887)
Q Consensus 422 ~~~A~~~~~~al~~~p 437 (887)
.+..+++=++.....|
T Consensus 488 L~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8887777777766666
No 183
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.20 E-value=1.3e-06 Score=91.46 Aligned_cols=413 Identities=11% Similarity=0.063 Sum_probs=279.5
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH
Q 002729 57 EEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD 136 (887)
Q Consensus 57 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 136 (887)
++-++.+|.+..+|+.+.+-+..+ -+++..+.|++.+...|..+.+|...+...+..++++....+|.+.+..-- +.+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence 567889999999999999988777 999999999999999999999999999999999999999999999986532 244
Q ss_pred HHHH-HHHHHHHcCChHHHHH----HHHHHHh---hCCChHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhC
Q 002729 137 AHSN-LGNLMKAQGLVQEAYS----CYLEALR---IQPTFAIAWSNLAGLFM---------ESGDLNRALQYYKEAVKLK 199 (887)
Q Consensus 137 ~~~~-la~~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l~~~ 199 (887)
.|.. +..+-...++...+.. .|+-++. .++.+...|...+..+. .+.+.+...+.|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 4433 3333344444444333 3333333 35666677777665533 3446667788888888643
Q ss_pred CCCHH-HHHHH-----------H--HHHHHcCChHHHHHHHHHHHhhC-------CC------------hhHHhhHHHHH
Q 002729 200 PTFPD-AYLNL-----------G--NVYKALGMPQEAIMCYQRAVQTR-------PN------------AIAFGNLASTY 246 (887)
Q Consensus 200 ~~~~~-~~~~l-----------~--~~~~~~g~~~~A~~~~~~~~~~~-------p~------------~~~~~~la~~~ 246 (887)
-.+.+ .|... | .+-.+...|..|...+++..... |. ...|.++...-
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 33322 22111 1 11223345667777777665421 11 12233333322
Q ss_pred HHcCC--------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcC-CCC
Q 002729 247 YERGQ--------ADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR--------------VDEAIQCYNQCLSLQ-PSH 303 (887)
Q Consensus 247 ~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~-p~~ 303 (887)
...+- -....-.+++++..-+-.++.|+..+..+...++ -+++..+++++++.. ..+
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 22111 1123345666666666777788777666666555 677888888877643 223
Q ss_pred hHHHHhHHHHHHHcC---ChhHHHHHHHHHHhccCC-CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002729 304 PQALTNLGNIYMEWN---MLPAAASYYKATLAVTTG-LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRG 379 (887)
Q Consensus 304 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 379 (887)
...++.++..-...- +.+.....+++++..... ..-+|..+...-.+..-.+.|..+|.++-+..-....++..-|
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A 407 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAA 407 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence 444555554433333 367777888888876544 3445777777777888899999999999876544445555444
Q ss_pred H-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCC-ChHHHHHHHHHhhhcCC
Q 002729 380 N-TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL--RPD-FPEATCNLLHTLQCVCS 455 (887)
Q Consensus 380 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~l~~~~~~~g~ 455 (887)
. -|...++.+-|.++|+-.++..++.+..-......+...|+-..|+.+|++++.. .|+ ...+|..++.--.+.|+
T Consensus 408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 3 3556799999999999999999999999999999999999999999999999987 332 34677777777778888
Q ss_pred hhhHhHHHHHHHHHHH
Q 002729 456 WEDRDRMFSEVEGIIR 471 (887)
Q Consensus 456 ~~~a~~~~~~~~~~~~ 471 (887)
.....++-++.-..++
T Consensus 488 L~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 7776666665555444
No 184
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=4.4e-09 Score=109.06 Aligned_cols=153 Identities=23% Similarity=0.166 Sum_probs=113.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002729 64 PRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGN 143 (887)
Q Consensus 64 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 143 (887)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++...++.++|.+.+++++..+|+.......+|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002729 144 LMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAI 223 (887)
Q Consensus 144 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (887)
.+.+.|++++|+..++..+..+|+++..|..|++.|..+|+..++... .+..|...|++++|+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 777777777777777777777777777777777777777766555433 344555667777777
Q ss_pred HHHHHHHhhC
Q 002729 224 MCYQRAVQTR 233 (887)
Q Consensus 224 ~~~~~~~~~~ 233 (887)
..+..+.+..
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 7777666653
No 185
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.20 E-value=1.7e-10 Score=129.43 Aligned_cols=162 Identities=18% Similarity=0.090 Sum_probs=112.9
Q ss_pred CCCCCCCCC-CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEE-cCC
Q 002729 703 KRSDYGLPE-DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIF-TDV 777 (887)
Q Consensus 703 ~r~~~~l~~-~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~-~~~ 777 (887)
.|.++|+++ +.+++++++|+ .|..+.+++++.++++. +.+|+|+|.++. ..+.+++...+.| +++.| .|.
T Consensus 271 l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~---~~v~~~~g~ 345 (466)
T PRK00654 271 LQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYP---GKVGVQIGY 345 (466)
T ss_pred HHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCC---CcEEEEEeC
Confidence 467789985 67888888886 59999999999998764 688999987653 3567787777776 45665 454
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~ 854 (887)
+.+.....|+.+|++|-|+.++| |++.+|||++|+|+|+.....+.+-+...--..-+-++ ++. .|.+++.+...
T Consensus 346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G-~lv~~~d~~~la~~i~ 423 (466)
T PRK00654 346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATG-FVFDDFNAEDLLRALR 423 (466)
T ss_pred -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 43444567899999999988888 99999999999998865443333322110000001334 443 57888887777
Q ss_pred HHhc---CHHHHHHHHHHHH
Q 002729 855 SLAL---DRQKLQALTNKLK 871 (887)
Q Consensus 855 ~l~~---d~~~~~~~~~~~~ 871 (887)
++.. |++.+.+++.+..
T Consensus 424 ~~l~~~~~~~~~~~~~~~~~ 443 (466)
T PRK00654 424 RALELYRQPPLWRALQRQAM 443 (466)
T ss_pred HHHHHhcCHHHHHHHHHHHh
Confidence 6654 7777777765553
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.20 E-value=1.8e-06 Score=95.99 Aligned_cols=431 Identities=13% Similarity=0.061 Sum_probs=276.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHH
Q 002729 43 YYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQ 122 (887)
Q Consensus 43 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 122 (887)
....+++.+|++...+.++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35668899999999999999999999999999999999999999988888877888888899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc-CCH---------HHHHHHH
Q 002729 123 CCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDL---------NRALQYY 192 (887)
Q Consensus 123 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~---------~~A~~~~ 192 (887)
+|++++..+|+ .+....+=.+|.+.+.|.+-.+.--+..+..|+++..+-....++++. ... .-|....
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 99999999999 888888888999999988877777777778888776544444444432 222 2355566
Q ss_pred HHHHhhC-CCCHH-HHHHHHHHHHHcCChHHHHHHHH-HHHhhCCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCC
Q 002729 193 KEAVKLK-PTFPD-AYLNLGNVYKALGMPQEAIMCYQ-RAVQTRPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDP 267 (887)
Q Consensus 193 ~~~l~~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 267 (887)
++.++.. +-... -....-.++..+|++++|.+.+. ...+..+. ...-......+...+++.+-.++..+++...+
T Consensus 178 ~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 178 QKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 6666655 22111 12233356677899999999994 44444444 33334566778888999999999999998888
Q ss_pred CcHHHHHH-HHHHH------------HHcCCHHHHHHHHHHHHhcCCCChH-HHHhHHHHHHHcCChhHHHHHHHHHHhc
Q 002729 268 RFLEAYNN-LGNAL------------KDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEWNMLPAAASYYKATLAV 333 (887)
Q Consensus 268 ~~~~~~~~-la~~~------------~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 333 (887)
++..++.. .-.++ ...+..+...+..++.+......+. ++..+-.-+..-|+.+++...|-+-+..
T Consensus 258 Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~ 337 (932)
T KOG2053|consen 258 DDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGD 337 (932)
T ss_pred cchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCC
Confidence 87322221 11111 1112233333333333332222222 2233333334567777766555443322
Q ss_pred cCC------------------------------Cc---hh---HhhHHHHHHHcCCH-----HHHHHHHHHHHh------
Q 002729 334 TTG------------------------------LS---AP---FNNLAVIYKQQGNY-----ADAISCYNEVLR------ 366 (887)
Q Consensus 334 ~~~------------------------------~~---~~---~~~la~~~~~~g~~-----~~A~~~~~~al~------ 366 (887)
.|- .. .. +.....+....|.+ +.-..++++...
T Consensus 338 kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gl 417 (932)
T KOG2053|consen 338 KPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGL 417 (932)
T ss_pred CcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccc
Confidence 111 00 00 11111111122311 122222222211
Q ss_pred -c----CCC---CHHHHHHH-----HHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHH
Q 002729 367 -I----DPL---AADGLVNR-----GNTYKEIGR---VTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYK 430 (887)
Q Consensus 367 -~----~p~---~~~~~~~l-----~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 430 (887)
. .|. ..+.+..+ -..+.+.++ +-+|+-.++..+..+|.+......+..+|.-.|-+..|.+.|+
T Consensus 418 s~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~ 497 (932)
T KOG2053|consen 418 SLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYK 497 (932)
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 1 111 12222222 234444444 5578888888888889888888888899988899888888888
Q ss_pred HHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh
Q 002729 431 QALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474 (887)
Q Consensus 431 ~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (887)
.+--.+-.....-+.+..-+...|+|..+...+.....++....
T Consensus 498 tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~ 541 (932)
T KOG2053|consen 498 TLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSL 541 (932)
T ss_pred hcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhh
Confidence 66544444444555556666667888888888777777665544
No 187
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=5.9e-09 Score=108.16 Aligned_cols=125 Identities=26% Similarity=0.254 Sum_probs=65.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHH
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 346 (887)
|....+++..+..+...|++++|+..+...+...|+|+..+...+.++.+.++..+|.+.+++++...|+....+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002729 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 391 (887)
.|.+.|++.+|+..++..+..+|+++..|..++..|..+|+..+|
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence 555555555555555555555555555555555555555544333
No 188
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.19 E-value=6.3e-10 Score=121.23 Aligned_cols=301 Identities=12% Similarity=0.155 Sum_probs=180.1
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCC-CcEEEEEecCCCCChHHHHHHHhhcC----ceEECCC--CC--------HH
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQSEAE----HFVDVSA--MS--------SD 602 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~--------~~ 602 (887)
||.++.+ ..|-...+.++++.+.+. .|++.+..+|... .. ...+..... ....+.. -+ ..
T Consensus 2 ~i~~~~g---tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~-~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T TIGR00236 2 KVSIVLG---TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR-EM-LDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLE 76 (365)
T ss_pred eEEEEEe---cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH-HH-HHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHH
Confidence 5666554 566666888998888764 6888888888764 22 233333332 2222322 11 15
Q ss_pred HHHHHHHhCCCeEEEecCCcCCCCchhhh------hcCCCceEEeccccCCCCCC----Cc-c-c---EEEecCccCCCC
Q 002729 603 MIAKLINEDKIQILINLNGYTKGARNEIF------AMQPAPIQVSYMGFPGTTGA----SY-I-D---YLVTDEFVSPLR 667 (887)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~------~~r~apvq~~~~g~~~t~g~----~~-~-d---~~~~d~~~~p~~ 667 (887)
++++.+++.++||+ |++|.+...+ .....|+-.+.-|- .|.+. +. + . ..++|.++.|.+
T Consensus 77 ~l~~~l~~~~pDiv-----~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~ 150 (365)
T TIGR00236 77 GLEELLLEEKPDIV-----LVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RTGDRYSPMPEEINRQLTGHIADLHFAPTE 150 (365)
T ss_pred HHHHHHHHcCCCEE-----EEeCCchHHHHHHHHHHHhCCCEEEEeCCC-CcCCCCCCCccHHHHHHHHHHHHhccCCCH
Confidence 67888999999999 5555443222 22446774332222 22221 10 0 0 013465666655
Q ss_pred c-------CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC---CCCCHHHHHHHHHHH
Q 002729 668 Y-------AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL---YKMDPEIFNTWCNIL 737 (887)
Q Consensus 668 ~-------~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~---~k~~~~~~~~~~~il 737 (887)
. .+...+++..+++......... . ........+..+|. ++.+++++.++. .|..+.+++++.++.
T Consensus 151 ~~~~~l~~~G~~~~~I~vign~~~d~~~~~---~-~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~ 225 (365)
T TIGR00236 151 QAKDNLLRENVKADSIFVTGNTVIDALLTN---V-EIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKAIREIV 225 (365)
T ss_pred HHHHHHHHcCCCcccEEEeCChHHHHHHHH---H-hhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHHHHHHH
Confidence 3 1223346666666532110000 0 00011223455663 345666676653 377899999999998
Q ss_pred hhcCCceEEEecCC-hhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCcee
Q 002729 738 RRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI 816 (887)
Q Consensus 738 ~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvv 816 (887)
++.|+.++++.+.+ +.....+ ....+. .++|.|.+.+++.+++.++..+|+++-++ |..++|||++|+|||
T Consensus 226 ~~~~~~~~vi~~~~~~~~~~~~---~~~~~~-~~~v~~~~~~~~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI 297 (365)
T TIGR00236 226 EEFEDVQIVYPVHLNPVVREPL---HKHLGD-SKRVHLIEPLEYLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVL 297 (365)
T ss_pred HHCCCCEEEEECCCChHHHHHH---HHHhCC-CCCEEEECCCChHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEE
Confidence 88899888876543 3322223 233455 57899999999999999999999998543 344799999999999
Q ss_pred eec--ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002729 817 TLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (887)
Q Consensus 817 t~~--g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~ 870 (887)
+.. |+. .. +. ..|..- ++..|+++..+...++..|++.+++++...
T Consensus 298 ~~~~~~~~-~e-----~~-~~g~~~-lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~ 345 (365)
T TIGR00236 298 VLRDTTER-PE-----TV-EAGTNK-LVGTDKENITKAAKRLLTDPDEYKKMSNAS 345 (365)
T ss_pred ECCCCCCC-hH-----HH-hcCceE-EeCCCHHHHHHHHHHHHhChHHHHHhhhcC
Confidence 964 322 11 11 135443 556799999998889999998887776543
No 189
>PLN00142 sucrose synthase
Probab=99.18 E-value=3.3e-10 Score=128.90 Aligned_cols=162 Identities=13% Similarity=0.067 Sum_probs=120.8
Q ss_pred CCCCC--CCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-----h------HHHHHHHHHHcCCCC
Q 002729 705 SDYGL--PEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----G------EMRLRAYAVAQGVQP 769 (887)
Q Consensus 705 ~~~~l--~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~------~~~l~~~~~~~g~~~ 769 (887)
..+|+ +.+..++++.+|+ .|..+.++++++++.+..|+.+|+|+|++.. . ..++.+.+.+.|+ .
T Consensus 563 e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~ 641 (815)
T PLN00142 563 EHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-K 641 (815)
T ss_pred HHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-C
Confidence 34565 3445677788887 5999999999999877778899999986521 0 1357778889999 6
Q ss_pred CcEEEcCCC----CcHHHHHhcc-CCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc
Q 002729 770 DQIIFTDVA----MKQEHIRRSS-LADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (887)
Q Consensus 770 ~r~~~~~~~----~~~~~~~~~~-~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~ 843 (887)
++|.|.|.. +..+...++. .+|||+-|+.++| |+|++|||+||+|||+-......+-+.. |.++ +++
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~d------G~tG-~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVD------GVSG-FHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcC------CCcE-EEe
Confidence 999999853 3356666555 4799999988888 9999999999999997554444442221 6777 655
Q ss_pred --CCHHHHHHHHHH----HhcCHHHHHHHHHHHHhhc
Q 002729 844 --NSMKEYEERAVS----LALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 844 --~~~~~y~~~a~~----l~~d~~~~~~~~~~~~~~~ 874 (887)
.|.+++.+.... +..|++.+.++++..+++.
T Consensus 715 ~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv 751 (815)
T PLN00142 715 DPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRI 751 (815)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 578888777654 4579999999998877664
No 190
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.17 E-value=4.9e-10 Score=121.75 Aligned_cols=245 Identities=15% Similarity=0.168 Sum_probs=143.6
Q ss_pred HHHHHHHhCCCeEEEecCCcCCCCchhhhh-cCCCceEEecc-ccCCCCCC-CcccEEEecCccCCCCcCC--CCcccee
Q 002729 603 MIAKLINEDKIQILINLNGYTKGARNEIFA-MQPAPIQVSYM-GFPGTTGA-SYIDYLVTDEFVSPLRYAH--IYSEKLV 677 (887)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~-~r~apvq~~~~-g~~~t~g~-~~~d~~~~d~~~~p~~~~~--~~~e~~~ 677 (887)
.+.+.|++.++||++..++... --..+.+ ....|+.+.-. .+| +. ..+-+..+|.++.+..... ...+++.
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~~-~~~~~~a~~~~~p~v~~~~~~~~---~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 155 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYVS-GPVGLAAKLLGIPLVIHEQNAVP---GLANRLLARFADRVALSFPETAKYFPKDKAV 155 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCcc-hHHHHHHHHhCCCEEEEcCCCCc---cHHHHHHHHhhCEEEEcchhhhhcCCCCcEE
Confidence 4678889999999975433221 0011112 23457654211 111 11 0111223455544443322 2246676
Q ss_pred ecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCC--CCCHHHH-HHHHHHHhhcCCce-EEEecCChh
Q 002729 678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIF-NTWCNILRRVPNSA-LWLLRFPAA 753 (887)
Q Consensus 678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--k~~~~~~-~~~~~il~~~p~~~-l~~~~~~~~ 753 (887)
.+|+...... ..+ .+.|..++++++.++++.+.+.. |...+++ ++...+. + ++.. ++++|.+
T Consensus 156 ~i~n~v~~~~--------~~~--~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-- 221 (350)
T cd03785 156 VTGNPVREEI--------LAL--DRERARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-- 221 (350)
T ss_pred EECCCCchHH--------hhh--hhhHHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc--
Confidence 6665432111 111 11267788888777666655432 4333333 5554443 2 4454 4455655
Q ss_pred hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhhhHHH
Q 002729 754 GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGS 830 (887)
Q Consensus 754 ~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r~~~~ 830 (887)
..+.+++..++. .++|+|.|.. .+...+|..+|+++-+ +|++|++|||++|+|||+.+-... .....+.
T Consensus 222 ~~~~l~~~~~~~---~~~v~~~g~~--~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~ 293 (350)
T cd03785 222 DLEEVKKAYEEL---GVNYEVFPFI--DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANAR 293 (350)
T ss_pred cHHHHHHHHhcc---CCCeEEeehh--hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHH
Confidence 356777777665 3789999987 6778889999999953 367899999999999998653221 1111233
Q ss_pred HHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q 002729 831 LCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 831 ~l~~~g~~~~~~~~---~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~ 874 (887)
.+...|..- ++-. |.+++.+....+..|++.++.++.+.++..
T Consensus 294 ~l~~~g~g~-~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 294 ALVKAGAAV-LIPQEELTPERLAAALLELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhCCCEE-EEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 455556543 4432 799999999999999999999999887653
No 191
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.17 E-value=7.3e-10 Score=121.05 Aligned_cols=303 Identities=13% Similarity=0.122 Sum_probs=177.4
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCCC-CcEEEEEecCCCCChHHHHHHHh-----hcCceEECCCCC----------H
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNKE-NVEVFCYALSPNDGTEWRQRTQS-----EAEHFVDVSAMS----------S 601 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~----------~ 601 (887)
||.+|.+ .-|---.+.|+++.+... ++++.++.++...+..+..-+.. ..+....+.+-+ .
T Consensus 1 ~i~~~~g---tr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 77 (363)
T cd03786 1 KILVVTG---TRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLL 77 (363)
T ss_pred CEEEEEe---cCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHH
Confidence 3555553 234334667777777665 79999888887665443322222 223333333321 2
Q ss_pred HHHHHHHHhCCCeEEEecCCcCCCCchh----hhh--cCCCceEEeccccCC-CCCCCc--cc---EEEecCccCCCCcC
Q 002729 602 DMIAKLINEDKIQILINLNGYTKGARNE----IFA--MQPAPIQVSYMGFPG-TTGASY--ID---YLVTDEFVSPLRYA 669 (887)
Q Consensus 602 ~~~~~~i~~~~~dil~~~~~~~~~~~~~----~~~--~r~apvq~~~~g~~~-t~g~~~--~d---~~~~d~~~~p~~~~ 669 (887)
..+.+.+++.++||++ ++|.+.. ..+ ..--|+-.+.-|... ..+.+. .- ..++|.++.|.+..
T Consensus 78 ~~l~~~l~~~~pDvV~-----~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~ 152 (363)
T cd03786 78 IGLEAVLLEEKPDLVL-----VLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGMPDEENRHAIDKLSDLHFAPTEEA 152 (363)
T ss_pred HHHHHHHHHhCCCEEE-----EeCCchHHHHHHHHHHHcCCCEEEEecccccCCCCCCchHHHHHHHHHhhhccCCCHHH
Confidence 5567788889999995 4443322 112 123466543323110 001110 00 11346666665532
Q ss_pred CC-------CccceeecCCccccCCCccccccCCCCCC-CCCCCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHHH
Q 002729 670 HI-------YSEKLVHVPHCYFVNDYKQKNMDVLDPNC-QPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCNI 736 (887)
Q Consensus 670 ~~-------~~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~r~~~~l~~~~~~~~~~~~~-----~k~~~~~~~~~~~i 736 (887)
.. -.+++..+|+......... .+... ...|..+|++++.++++++++. .|..+.+++++.++
T Consensus 153 ~~~l~~~G~~~~kI~vign~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l 227 (363)
T cd03786 153 RRNLLQEGEPPERIFVVGNTMIDALLRL-----LELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAEL 227 (363)
T ss_pred HHHHHHcCCCcccEEEECchHHHHHHHH-----HHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHH
Confidence 21 2345655655421110000 00011 1134567888777777777765 46778888888877
Q ss_pred HhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCcee
Q 002729 737 LRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI 816 (887)
Q Consensus 737 l~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvv 816 (887)
... +..+++.+.++. +..+++.+.+.+...++|.|.|.....+...+|..+|+++-++. | .+.||+++|+|||
T Consensus 228 ~~~--~~~vi~~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg---g-i~~Ea~~~g~PvI 300 (363)
T cd03786 228 AEE--DVPVVFPNHPRT-RPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG---G-IQEEASFLGVPVL 300 (363)
T ss_pred Hhc--CCEEEEECCCCh-HHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc---c-HHhhhhhcCCCEE
Confidence 543 455555554443 67888888888874578999998888888888999999996642 3 5799999999999
Q ss_pred eecccc-hhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002729 817 TLPLEK-MATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALT 867 (887)
Q Consensus 817 t~~g~~-~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~ 867 (887)
+..... .+. +..-|..- ++.++.++.++...++..|++.+..++
T Consensus 301 ~~~~~~~~~~------~~~~g~~~-~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 301 NLRDRTERPE------TVESGTNV-LVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred eeCCCCccch------hhheeeEE-ecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 986432 222 22235544 455578999999999999988776664
No 192
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.16 E-value=8.4e-10 Score=124.52 Aligned_cols=163 Identities=16% Similarity=0.019 Sum_probs=119.2
Q ss_pred CCCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCCh-hhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPA-AGEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~-~~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.|.++|++. +.+++++++|+ .|..+.+++++.++.+. +.+|+|+|.++ ...+.+++...+.+ +++.|.+.
T Consensus 279 l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~---~~v~~~~~ 353 (473)
T TIGR02095 279 LQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYP---GNVRVIIG 353 (473)
T ss_pred HHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCC---CcEEEEEc
Confidence 567789986 77888888887 59999999999988764 48999999774 33556666666543 67888887
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~ 854 (887)
.+.++....|+.+|++|-|+-++| |++.+|||++|+|||+.....+.+-+...--...+-++ ++. .|++++.+...
T Consensus 354 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G-~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 354 YDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTG-FLFEEYDPGALLAALS 432 (473)
T ss_pred CCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCce-EEeCCCCHHHHHHHHH
Confidence 777777788999999999988888 99999999999999976554444433210000001334 443 57888888877
Q ss_pred HHhc----CHHHHHHHHHHHH
Q 002729 855 SLAL----DRQKLQALTNKLK 871 (887)
Q Consensus 855 ~l~~----d~~~~~~~~~~~~ 871 (887)
++.. |++.+++++.+..
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~ 453 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAM 453 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHh
Confidence 6665 8888888877654
No 193
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=1e-09 Score=98.14 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=72.5
Q ss_pred CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002729 301 PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN 380 (887)
Q Consensus 301 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 380 (887)
++.-+..+.+|..+...|++++|.+.|+.+...+|.+...|++||.++..+|++++|+..|.+++.++|+++..+.+.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44555666666666666777777777776666777777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC
Q 002729 381 TYKEIGRVTDAIQDYIRAITIR 402 (887)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~ 402 (887)
|+...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777777654
No 194
>PRK14099 glycogen synthase; Provisional
Probab=99.14 E-value=5.7e-10 Score=124.55 Aligned_cols=160 Identities=21% Similarity=0.175 Sum_probs=110.6
Q ss_pred CCCCCCCCC--CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcE-EEcC
Q 002729 703 KRSDYGLPE--DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQI-IFTD 776 (887)
Q Consensus 703 ~r~~~~l~~--~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~-~~~~ 776 (887)
.|.++|++. +.++|++++|+ .|..+.++++..++++. +.+|+|+|.++. .++.+++...+.+ +++ .|+|
T Consensus 283 l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~---~~v~~~~G 357 (485)
T PRK14099 283 LQARFGLDPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYP---GQIGVVIG 357 (485)
T ss_pred HHHHcCCCcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCC---CCEEEEeC
Confidence 466789974 56788888886 59999999999988753 688999997653 3556777666654 555 6888
Q ss_pred CCCcHHHHHhc-cCCcEEecCCCCCC-chhHHHHHHhCC-ceeeecccchhhhhHHH--HHHhcC-CCCcccc--CCHHH
Q 002729 777 VAMKQEHIRRS-SLADLFLDTPLCNA-HTTGTDILWAGL-PMITLPLEKMATRVAGS--LCLATG-LGEEMIV--NSMKE 848 (887)
Q Consensus 777 ~~~~~~~~~~~-~~~d~~ld~~~~~g-~~t~~eal~~gv-Pvvt~~g~~~~~r~~~~--~l~~~g-~~~~~~~--~~~~~ 848 (887)
. .++...+| ..+|++|-|+-++| |++.+|||++|+ ||||-.|. ..+-+... .....| -++ +++ .|.++
T Consensus 358 ~--~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GG-l~d~V~~~~~~~~~~~~~~G-~l~~~~d~~~ 433 (485)
T PRK14099 358 Y--DEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGG-LADTVVDANEMAIATGVATG-VQFSPVTADA 433 (485)
T ss_pred C--CHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCC-ccceeecccccccccCCCce-EEeCCCCHHH
Confidence 6 45556655 57999999988888 999999999995 55553332 22211100 000001 234 443 57888
Q ss_pred HHHHHHH---HhcCHHHHHHHHHHHH
Q 002729 849 YEERAVS---LALDRQKLQALTNKLK 871 (887)
Q Consensus 849 y~~~a~~---l~~d~~~~~~~~~~~~ 871 (887)
+.+...+ +.+|++.+++++++.+
T Consensus 434 La~ai~~a~~l~~d~~~~~~l~~~~~ 459 (485)
T PRK14099 434 LAAALRKTAALFADPVAWRRLQRNGM 459 (485)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 8777664 7789998888887664
No 195
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=5.1e-07 Score=98.34 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=155.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCh
Q 002729 38 LLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRL 117 (887)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 117 (887)
..+....++|-.++|+.+|.+.-+ +-.+-..|...|.+++|.++-+.--.+. -...|+..+..+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 344555667777777777776543 2344556667777777766654321111 133567777777777777
Q ss_pred HHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q 002729 118 NEAAQCCRQA----------LALNP----------LLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAG 177 (887)
Q Consensus 118 ~~A~~~~~~~----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 177 (887)
+.|+++|+++ +..+| .+...|...|..+...|+.+.|+..|..+.. |+.+.+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~Vr 946 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVR 946 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhee
Confidence 7777777764 22233 2445666777777888888888888877543 455556
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------C--C--h-----------
Q 002729 178 LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR------P--N--A----------- 236 (887)
Q Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p--~--~----------- 236 (887)
+.+-+|+.++|-.+.++. .+..+.+.+++.|...|+..+|+..|.++-... . + .
T Consensus 947 I~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~ 1021 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGG 1021 (1416)
T ss_pred eEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCc
Confidence 666666666665555432 445566667777777777777777666553311 0 0 0
Q ss_pred hHHhhHHHHHHHcC-ChHHHHHHHHHH------H-----------------hcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Q 002729 237 IAFGNLASTYYERG-QADMAILYYKQA------I-----------------GCDP-RFLEAYNNLGNALKDVGRVDEAIQ 291 (887)
Q Consensus 237 ~~~~~la~~~~~~g-~~~~A~~~~~~~------l-----------------~~~p-~~~~~~~~la~~~~~~g~~~~A~~ 291 (887)
.-....+..|...| ..+.|..+|.++ + .++| .++.....-+..+....+|++|..
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~ 1101 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVN 1101 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHH
Confidence 11112233333333 444444444332 0 1233 245566666777777777777766
Q ss_pred HHHHH------HhcC----------------CCC---------hHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002729 292 CYNQC------LSLQ----------------PSH---------PQALTNLGNIYMEWNMLPAAASYYKAT 330 (887)
Q Consensus 292 ~~~~a------l~~~----------------p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 330 (887)
++-.+ +.+. |.. ..++..++.++.++|.|..|-+-|.++
T Consensus 1102 lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1102 LLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 55433 2221 110 235667788888888887777766554
No 196
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.13 E-value=3e-10 Score=112.34 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=121.2
Q ss_pred CCcccEEEecCccCCCCc---CCCCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCC--CCC
Q 002729 651 ASYIDYLVTDEFVSPLRY---AHIYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQL--YKM 725 (887)
Q Consensus 651 ~~~~d~~~~d~~~~p~~~---~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~--~k~ 725 (887)
+..+|-.|.=....-++. ...-.+++.-+|+....-.+.+. +...++ .+..+....+|+ .|-
T Consensus 143 L~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~------~~~~~S-------~~i~~ivv~sRLvyrKG 209 (426)
T KOG1111|consen 143 LANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPD------AADKPS-------ADIITIVVASRLVYRKG 209 (426)
T ss_pred ecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccC------ccccCC-------CCeeEEEEEeeeeeccc
Confidence 344555554333332221 33456888889987655444321 111111 233566666666 599
Q ss_pred CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chh
Q 002729 726 DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTT 804 (887)
Q Consensus 726 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t 804 (887)
.|-++++-.+|.+..|+.++++.|+||. +..+++..++.-+ .+||.|+|.++.++.-+.|...||||.|+--+. |++
T Consensus 210 iDll~~iIp~vc~~~p~vrfii~GDGPk-~i~lee~lEk~~l-~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ 287 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFIIIGDGPK-RIDLEEMLEKLFL-QDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMV 287 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecCCcc-cchHHHHHHHhhc-cCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHH
Confidence 9999999999999999999999999997 7778888888888 799999999999999999999999999966666 999
Q ss_pred HHHHHHhCCceeeecccchhhhhHHHHHHhcCCCC
Q 002729 805 GTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839 (887)
Q Consensus 805 ~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~ 839 (887)
.+||+.||+||| +.|+| |+||
T Consensus 288 ivEAaScGL~VV-------sTrVG-------GIpe 308 (426)
T KOG1111|consen 288 IVEAASCGLPVV-------STRVG-------GIPE 308 (426)
T ss_pred HHHHHhCCCEEE-------EeecC-------Cccc
Confidence 999999999999 67888 7777
No 197
>PHA01633 putative glycosyl transferase group 1
Probab=99.12 E-value=7.5e-10 Score=115.19 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=86.7
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----ceEEEecCChhhHHHHHHHHHHcCCCCCcEEEc---CCCCcHH
Q 002729 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFT---DVAMKQE 782 (887)
Q Consensus 712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~---~~~~~~~ 782 (887)
+.++|++++|+ .|..+.++++|.++.++.|+ .+|+++|. ..+.+.++ +++|.|. |..+.++
T Consensus 147 ~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~---------~~~~~l~l-~~~V~f~g~~G~~~~~d 216 (335)
T PHA01633 147 DTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH---------KQFTQLEV-PANVHFVAEFGHNSREY 216 (335)
T ss_pred CCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH---------HHHHHcCC-CCcEEEEecCCCCCHHH
Confidence 45677777775 69999999999999888875 46776652 12356777 6899998 4556788
Q ss_pred HHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhH
Q 002729 783 HIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 783 ~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
....|+.+|++|-|+-++| |++.+|||+||+|||+-..+.+.+-+|
T Consensus 217 l~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g 263 (335)
T PHA01633 217 IFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTS 263 (335)
T ss_pred HHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecC
Confidence 8999999999999987888 999999999999999987777666555
No 198
>PLN02275 transferase, transferring glycosyl groups
Probab=99.12 E-value=7.3e-10 Score=120.58 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=101.0
Q ss_pred EEEEecCCC--CCCCHHHHHHHHHHH-----------------hhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEE
Q 002729 714 FIFACFNQL--YKMDPEIFNTWCNIL-----------------RRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF 774 (887)
Q Consensus 714 ~~~~~~~~~--~k~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~ 774 (887)
+++++.+++ .|..+.+++++..+. +..|+.+|+|+|+|+. ++.+++.+++.|++ + ++|
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~-~~~l~~~~~~~~l~-~-v~~ 290 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ-KAMYEEKISRLNLR-H-VAF 290 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC-HHHHHHHHHHcCCC-c-eEE
Confidence 455565664 589999999987664 2358999999999987 78999999999994 4 777
Q ss_pred cC-CCCcHHHHHhccCCcEEecCCC--C-CC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHH
Q 002729 775 TD-VAMKQEHIRRSSLADLFLDTPL--C-NA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEY 849 (887)
Q Consensus 775 ~~-~~~~~~~~~~~~~~d~~ld~~~--~-~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y 849 (887)
.+ .++.++...+|+.+|+++-+.+ . .| +++++|||+||+|||+......++-+.. |.++ ++..+.+++
T Consensus 291 ~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~------g~~G-~lv~~~~~l 363 (371)
T PLN02275 291 RTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKD------GKNG-LLFSSSSEL 363 (371)
T ss_pred EcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHHHccC------CCCe-EEECCHHHH
Confidence 55 6889999999999999996422 1 33 7889999999999998765444443321 6677 777788887
Q ss_pred HHHHHHH
Q 002729 850 EERAVSL 856 (887)
Q Consensus 850 ~~~a~~l 856 (887)
.+...+|
T Consensus 364 a~~i~~l 370 (371)
T PLN02275 364 ADQLLEL 370 (371)
T ss_pred HHHHHHh
Confidence 7766554
No 199
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.11 E-value=2.5e-09 Score=116.35 Aligned_cols=304 Identities=14% Similarity=0.136 Sum_probs=169.1
Q ss_pred ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCce--EECCCC---C-----------
Q 002729 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHF--VDVSAM---S----------- 600 (887)
Q Consensus 537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~----------- 600 (887)
.||=+++...+.|-. ....+.+.+...++||++........ ...++..--++ .+.... +
T Consensus 2 ~~i~i~~~g~gG~~~--~~~~la~~L~~~g~ev~vv~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (357)
T PRK00726 2 KKILLAGGGTGGHVF--PALALAEELKKRGWEVLYLGTARGME---ARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKL 76 (357)
T ss_pred cEEEEEcCcchHhhh--HHHHHHHHHHhCCCEEEEEECCCchh---hhccccCCCcEEEEeccCcCCCChHHHHHHHHHH
Confidence 356666655555543 33345556666678988876533111 11222211122 222111 1
Q ss_pred ---HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhc--CCCceEEeccc-cCCCCCCCcccEEEecCccCCCCcC--CCC
Q 002729 601 ---SDMIAKLINEDKIQILINLNGYTKGARNEIFAM--QPAPIQVSYMG-FPGTTGASYIDYLVTDEFVSPLRYA--HIY 672 (887)
Q Consensus 601 ---~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~--r~apvq~~~~g-~~~t~g~~~~d~~~~d~~~~p~~~~--~~~ 672 (887)
...+.+.|++.++||+|--+.++. -...++. ...|+.++-.. .|+ ....+-|..+|.++...... ...
T Consensus 77 ~~~~~~~~~~ik~~~pDvv~~~~~~~~--~~~~~~~~~~~~p~v~~~~~~~~~--~~~r~~~~~~d~ii~~~~~~~~~~~ 152 (357)
T PRK00726 77 LKGVLQARKILKRFKPDVVVGFGGYVS--GPGGLAARLLGIPLVIHEQNAVPG--LANKLLARFAKKVATAFPGAFPEFF 152 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcch--hHHHHHHHHcCCCEEEEcCCCCcc--HHHHHHHHHhchheECchhhhhccC
Confidence 134567788899999975543331 1112222 33566543111 111 01112233344443322111 122
Q ss_pred ccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEecCCCC--CCCHHHH-HHHHHHHhhcCCceEEEec
Q 002729 673 SEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLY--KMDPEIF-NTWCNILRRVPNSALWLLR 749 (887)
Q Consensus 673 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~--k~~~~~~-~~~~~il~~~p~~~l~~~~ 749 (887)
..++..+|+......+ .+ ...+..++++++.++++.+++.. |....++ +++.++... | -++++.|
T Consensus 153 ~~~i~vi~n~v~~~~~--------~~--~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G 220 (357)
T PRK00726 153 KPKAVVTGNPVREEIL--------AL--AAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTG 220 (357)
T ss_pred CCCEEEECCCCChHhh--------cc--cchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcC
Confidence 3566666664322111 01 11234567776666666666543 4333444 777766543 4 4566777
Q ss_pred CChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhh
Q 002729 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATR 826 (887)
Q Consensus 750 ~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r 826 (887)
.++ .+.+.+... .|+. |.|.|.+ .++..++..+|+++-+ +|+.|++|||++|+|||+.+.... ...
T Consensus 221 ~g~--~~~~~~~~~-~~~~---v~~~g~~--~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~ 289 (357)
T PRK00726 221 KGD--LEEVRAAYA-AGIN---AEVVPFI--DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQT 289 (357)
T ss_pred CCc--HHHHHHHhh-cCCc---EEEeehH--hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHH
Confidence 765 345555555 7773 9999987 5677888999999953 357889999999999998864211 111
Q ss_pred hHHHHHHhcCCCCcccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 827 VAGSLCLATGLGEEMIV-NS--MKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 827 ~~~~~l~~~g~~~~~~~-~~--~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
.-+..+...|..- ++. .+ ++++.+...++.+|++.++++++..++.
T Consensus 290 ~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~ 338 (357)
T PRK00726 290 ANARALVDAGAAL-LIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARAL 338 (357)
T ss_pred HHHHHHHHCCCEE-EEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 1234455556633 443 34 8999999999999999999999988765
No 200
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.09 E-value=1e-09 Score=120.05 Aligned_cols=157 Identities=15% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCCCCCCCCCc-EEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEec-CChhhHHHHHHHHHHcCCCCCcEEEcCCC
Q 002729 703 KRSDYGLPEDK-FIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (887)
Q Consensus 703 ~r~~~~l~~~~-~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~r~~~~~~~ 778 (887)
.|..+|++++. +++...+++ .|....+++.+ ++..|+.++++++ .++...+.+.+. .+. .++|.|.|++
T Consensus 192 ~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~---~~~~~~~~~vvv~G~~~~l~~~l~~~---~~~-~~~v~~~G~~ 264 (391)
T PRK13608 192 WLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDI---LAKSANAQVVMICGKSKELKRSLTAK---FKS-NENVLILGYT 264 (391)
T ss_pred HHHHcCCCCCCCEEEEECCCcccchhHHHHHHHH---HhcCCCceEEEEcCCCHHHHHHHHHH---hcc-CCCeEEEecc
Confidence 45678887654 344445554 47777777765 3455777776654 333223444433 233 3579999987
Q ss_pred CcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc
Q 002729 779 MKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL 858 (887)
Q Consensus 779 ~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~ 858 (887)
. +...+|..+|+++- -+||+|+.|||++|+|+|+..-..-.+...+-++...|.. ++..|.++.++....|.+
T Consensus 265 ~--~~~~~~~~aDl~I~---k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g--~~~~~~~~l~~~i~~ll~ 337 (391)
T PRK13608 265 K--HMNEWMASSQLMIT---KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG--KIADTPEEAIKIVASLTN 337 (391)
T ss_pred c--hHHHHHHhhhEEEe---CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE--EEeCCHHHHHHHHHHHhc
Confidence 3 56778899999985 2578999999999999998742222344555667777774 456899999999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 002729 859 DRQKLQALTNKLKSV 873 (887)
Q Consensus 859 d~~~~~~~~~~~~~~ 873 (887)
|++.+++|+++.++.
T Consensus 338 ~~~~~~~m~~~~~~~ 352 (391)
T PRK13608 338 GNEQLTNMISTMEQD 352 (391)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
No 201
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.08 E-value=4.3e-08 Score=112.62 Aligned_cols=218 Identities=12% Similarity=0.167 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 002729 151 VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL-KPTF----PDAYLNLGNVYKALGMPQEAIMC 225 (887)
Q Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 225 (887)
-.+..+.|++.+..+|+....|..+.....+.++.++|.+..++++.. ++.. ..+|..+.++...-|.-+...+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 344566788888889999999999999999999999999999998874 3322 23666666666667777888889
Q ss_pred HHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--C
Q 002729 226 YQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS--H 303 (887)
Q Consensus 226 ~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~ 303 (887)
|+++.+.......+..|..+|...+++++|.++++.+++...+....|..++..+++.++-+.|..+++++++.-|. +
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 99988877667888888999999999999999999999877777888999999999998888999999999988777 6
Q ss_pred hHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 304 PQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID 368 (887)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 368 (887)
.+.....+.+.++.|+.+.+..+|+..+...|...+.|+-++..-.++|+.+.+..+|++++.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 77778888888888888888888888888888888888888888888888888888888887764
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.1e-06 Score=95.85 Aligned_cols=269 Identities=17% Similarity=0.182 Sum_probs=155.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (887)
.|....+.|..++|+.+|.+.-. +-.+-..|...|.+++|.++.+.--++. -...|+..+..+...++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHH
Confidence 34556667778888888877643 2345566777888888888766432221 2457888899999999999
Q ss_pred HHHHHHHHH----------HhcCCC----------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729 85 LAIRYYLVA----------IELRPN----------FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (887)
Q Consensus 85 ~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (887)
.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..+-. |+.+..+
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI 947 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRI 947 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheee
Confidence 999999875 222332 455677778888889999999999987743 3334444
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCC--------------HH
Q 002729 145 MKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL------KPTF--------------PD 204 (887)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~--------------~~ 204 (887)
.+-+|+.++|..+.++ ..+..+.+.+++.|...|++.+|+..|.++... ...+ +.
T Consensus 948 ~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred EeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 4444444444433322 233344444445555555554444444443221 0000 00
Q ss_pred HHHHHH--------------HHHHHcCChHHHHHHHHHH--------H--hhCC--ChhHHhhHHHHHHHcCChHHHHHH
Q 002729 205 AYLNLG--------------NVYKALGMPQEAIMCYQRA--------V--QTRP--NAIAFGNLASTYYERGQADMAILY 258 (887)
Q Consensus 205 ~~~~l~--------------~~~~~~g~~~~A~~~~~~~--------~--~~~p--~~~~~~~la~~~~~~g~~~~A~~~ 258 (887)
-....+ .+|.+.|.+.+|+++--+. + .+++ ++.....-+..+....+|++|..+
T Consensus 1023 d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred hHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 011111 2333334444443321110 0 1122 366666777777777777777766
Q ss_pred HHHHH------hc----------------CC------C---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 259 YKQAI------GC----------------DP------R---FLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (887)
Q Consensus 259 ~~~~l------~~----------------~p------~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (887)
+-.+. ++ .| + ....+..+|.++.++|.|..|-+-|.++
T Consensus 1103 L~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1103 LCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 54332 11 11 1 1246778899999999998888877665
No 203
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.07 E-value=2.6e-09 Score=114.18 Aligned_cols=107 Identities=13% Similarity=0.161 Sum_probs=55.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDI 83 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 83 (887)
..|..++..|+|++|+..|++++..+|.++.+++.+|.++...|++++|+..++++++++|.++.+++.+|.++...|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 84 DLAIRYYLVAIELRPNFADAWSNLASA 110 (887)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (887)
++|+..|+++++++|++..+...++.+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555555555544444444333
No 204
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.06 E-value=3.7e-09 Score=114.74 Aligned_cols=158 Identities=18% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCCCCCCCCcEEEEecCCCC--CCCHH-HHHHHHHHHhhcCCceEEE-ecCChhhHHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729 704 RSDYGLPEDKFIFACFNQLY--KMDPE-IFNTWCNILRRVPNSALWL-LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779 (887)
Q Consensus 704 r~~~~l~~~~~~~~~~~~~~--k~~~~-~~~~~~~il~~~p~~~l~~-~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~ 779 (887)
+..+|++++.++++++++.. |.... +++++.++... +.++++ .|.++ .+.+++.+.+.|+ .++|.|..
T Consensus 170 ~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~--~~~~~~~~g~~~--~~~l~~~~~~~~l-~~~v~~~~--- 241 (348)
T TIGR01133 170 RERFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK--GIQIVHQTGKND--LEKVKNVYQELGI-EAIVTFID--- 241 (348)
T ss_pred hhhcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--CcEEEEECCcch--HHHHHHHHhhCCc-eEEecCcc---
Confidence 44678888888877776543 44333 33566555432 334433 34332 4678888888887 46666662
Q ss_pred cHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhh--hhHHHHHHhcCCCCcccc-C--CHHHHHHHHH
Q 002729 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT--RVAGSLCLATGLGEEMIV-N--SMKEYEERAV 854 (887)
Q Consensus 780 ~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~--r~~~~~l~~~g~~~~~~~-~--~~~~y~~~a~ 854 (887)
.+...+|..+|+++-+ +|++|++|||++|+|+|+.+-+...+ +....++...|..- ++- . +.+++.+...
T Consensus 242 -~~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~ 316 (348)
T TIGR01133 242 -ENMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALL 316 (348)
T ss_pred -cCHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHH
Confidence 2667788999999953 46788999999999999875432222 22334566644433 332 2 4899999999
Q ss_pred HHhcCHHHHHHHHHHHHhhc
Q 002729 855 SLALDRQKLQALTNKLKSVR 874 (887)
Q Consensus 855 ~l~~d~~~~~~~~~~~~~~~ 874 (887)
.+..|++.++++++..++..
T Consensus 317 ~ll~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 317 KLLLDPANLEAMAEAARKLA 336 (348)
T ss_pred HHHcCHHHHHHHHHHHHhcC
Confidence 99999999999999887653
No 205
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.05 E-value=4.5e-08 Score=96.88 Aligned_cols=300 Identities=16% Similarity=0.196 Sum_probs=197.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCC---hhHHhhHHH
Q 002729 175 LAGLFMESGDLNRALQYYKEAVKLKPTFP---DAYLNLGNVYKALGMPQEAIMCYQRAVQT----RPN---AIAFGNLAS 244 (887)
Q Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~---~~~~~~la~ 244 (887)
.|.-++...++++|+..+.+.+..-.+.. ..+-.+..+...+|.+++++..--..++. ... -+++.+++.
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666665554332221 13334455666666666665543333221 111 566777777
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------hHHHHhHHHH
Q 002729 245 TYYERGQADMAILYYKQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH------PQALTNLGNI 313 (887)
Q Consensus 245 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~ 313 (887)
.+.+..++.+++.+-+..++.... -......++.++..++.++++++.|+++++...++ -.++..+|..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 777777777877777766643221 12455667888888888888888888888764332 2467788888
Q ss_pred HHHcCChhHHHHHHHHHHhccCC----C------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHH
Q 002729 314 YMEWNMLPAAASYYKATLAVTTG----L------SAPFNNLAVIYKQQGNYADAISCYNEVLRID------PLAADGLVN 377 (887)
Q Consensus 314 ~~~~g~~~~A~~~~~~~~~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~ 377 (887)
+....++++|.-+..++.++... + ..+.+.++..+..+|....|.++.+++.++. +.....+..
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 88888888888888887766432 1 2346678888889999999999999887763 234557778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHcCCCC------h
Q 002729 378 RGNTYKEIGRVTDAIQDYIRAITIRPT------MAEAHANLASAYKDSGHVEA-----AIKSYKQALLLRPDF------P 440 (887)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~~------~ 440 (887)
+|.+|...|+.+.|..-|+++...... ..+++...+.++....-..+ |++.-++++++...- -
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vl 331 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVL 331 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHH
Confidence 899999999999999999988765321 24566666666665544444 777777777653321 1
Q ss_pred HHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHh
Q 002729 441 EATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQV 474 (887)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 474 (887)
..+..+...|...|.-++-...+.++.+..+++.
T Consensus 332 K~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e~~ 365 (518)
T KOG1941|consen 332 KLHCRLASIYRSKGLQDELRAHVVRAHECVEETE 365 (518)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 2345677778777877777777777777666653
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=4.2e-08 Score=98.34 Aligned_cols=182 Identities=14% Similarity=0.030 Sum_probs=137.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHH
Q 002729 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAW 104 (887)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 104 (887)
.++..++..|..++..|++++|++.|++++...|..+. +.+.+|.++++.+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 35777889999999999999999999999999998754 45889999999999999999999999998875 4577
Q ss_pred HHHHHHHHHcC---------------C---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 105 SNLASAYMRKG---------------R---LNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQP 166 (887)
Q Consensus 105 ~~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 166 (887)
+.+|.++...+ + ..+|+..|++.++..|+...+- +|...+..+. .
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~---~ 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLK---D 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHH---H
Confidence 88887754443 1 3568889999999999875321 1111111110 0
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF---PDAYLNLGNVYKALGMPQEAIMCYQRA 229 (887)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (887)
.-..--...+..|.+.|.+..|+.-++.+++..|+. .+++..++..|...|..++|......+
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111223467888889999999999999999888775 457888889999999999988876654
No 207
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=3e-05 Score=80.34 Aligned_cols=403 Identities=17% Similarity=0.116 Sum_probs=223.5
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC---CCc----H
Q 002729 35 NLLLLGAIYYQLH--DYDMCIARNEEALRLEPRF---AECYGNMANAWK-EKGDIDLAIRYYLVAIELR---PNF----A 101 (887)
Q Consensus 35 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~----~ 101 (887)
++..+|..+...| +..+++++++......|.+ +.+...+|..++ -..+++.|...++++..+. |+. .
T Consensus 9 aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf 88 (629)
T KOG2300|consen 9 ALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKF 88 (629)
T ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhh
Confidence 4444555555555 5556666666555555443 334445554433 3455666666666655432 221 2
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhh-CCC---hHHHH
Q 002729 102 DAWSNLASAYMRKG-RLNEAAQCCRQALALNPLLVD----AHSNLGNLMKAQGLVQEAYSCYLEALRI-QPT---FAIAW 172 (887)
Q Consensus 102 ~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~---~~~~~ 172 (887)
++...++.+|.... .+..|...+++++++....+. ..+.++++..-..++..|.+.+.-..+. ++. .....
T Consensus 89 ~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ 168 (629)
T KOG2300|consen 89 QAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRML 168 (629)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHH
Confidence 34455566665555 556666666666666544332 3445566666666666666653221111 110 01111
Q ss_pred HHH--HHHHHHcCC---HHHHHHHHHHHHhhCCCCHH-------HHHHHH-HHHHHcCChHHHHHHHHHHHhh----C--
Q 002729 173 SNL--AGLFMESGD---LNRALQYYKEAVKLKPTFPD-------AYLNLG-NVYKALGMPQEAIMCYQRAVQT----R-- 233 (887)
Q Consensus 173 ~~l--a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~----~-- 233 (887)
+.+ +.+.....+ ...+.....++.+....++. .|..+- ..|...|+...+...++++-.. .
T Consensus 169 ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 169 FTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 111 122222222 23333333444433322221 222222 2233446655555555443321 0
Q ss_pred -----------CChh--HHhhH----HHHH-------HHcCChHHHHHHHHHHHhc------CCCcHH--------HHHH
Q 002729 234 -----------PNAI--AFGNL----ASTY-------YERGQADMAILYYKQAIGC------DPRFLE--------AYNN 275 (887)
Q Consensus 234 -----------p~~~--~~~~l----a~~~-------~~~g~~~~A~~~~~~~l~~------~p~~~~--------~~~~ 275 (887)
|... .|.-. +.+| ...|-+++|.++-++++.. .+.... .+..
T Consensus 249 ~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~ 328 (629)
T KOG2300|consen 249 SRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEH 328 (629)
T ss_pred CCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 1111 11000 1111 2345567777777776632 111111 2334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC---CC-------ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC-C--chhHh
Q 002729 276 LGNALKDVGRVDEAIQCYNQCLSLQ---PS-------HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG-L--SAPFN 342 (887)
Q Consensus 276 la~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~ 342 (887)
+..+-.-.|++.+|++....+.+.. |. .+.+.+.+|......+.++.|...|..+.+.... + .....
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4556666799999999888887753 43 2446777888888889999999999998877543 2 23355
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cH
Q 002729 343 NLAVIYKQQGNYADAISCYNEVLRIDPLA----------ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT------MA 406 (887)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 406 (887)
++|..|...|+-+.-.+.++.. +|.+ ..+++..|...+..+++.||...+.+.+++... ..
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Confidence 7899999988766655554443 4432 236777888889999999999999999987521 12
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
-.+..|+.+....|+..++.+..+-++++..+.+
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC
Confidence 3456688888999999999999988887654433
No 208
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.03 E-value=3.3e-10 Score=103.88 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=87.8
Q ss_pred cEEEEecCCCC--CCCHHHHH-HHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729 713 KFIFACFNQLY--KMDPEIFN-TWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (887)
Q Consensus 713 ~~~~~~~~~~~--k~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 789 (887)
.++||++++.. |....+++ +|.++.++.|+..|.|.|.++. ++++. ..++|.|.|.+ +++.+.++.
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~---~l~~~------~~~~v~~~g~~--~e~~~~l~~ 70 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD---ELKRL------RRPNVRFHGFV--EELPEILAA 70 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS----HHCCH------HHCTEEEE-S---HHHHHHHHC
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH---HHHHh------cCCCEEEcCCH--HHHHHHHHh
Confidence 46788888875 88899999 9999999999999999997655 23333 24689999998 589999999
Q ss_pred CcEEecCCCCC-C-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcC
Q 002729 790 ADLFLDTPLCN-A-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALD 859 (887)
Q Consensus 790 ~d~~ld~~~~~-g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d 859 (887)
+||++.|+..+ + +++++|+|++|+|||+... .+.+ +....|..- ++..|.+++++...+|.+|
T Consensus 71 ~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~-----~~~~~~~~~-~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 71 ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-GAEG-----IVEEDGCGV-LVANDPEELAEAIERLLND 135 (135)
T ss_dssp -SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-HCHC-----HS---SEEE-E-TT-HHHHHHHHHHHHH-
T ss_pred CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-chhh-----heeecCCeE-EECCCHHHHHHHHHHHhcC
Confidence 99999997643 3 6889999999999999776 2221 122224444 6689999999999999876
No 209
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.02 E-value=4.7e-09 Score=112.15 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=99.7
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (887)
+...|..++..|++++|+.+|+++++++|.++.+++.+|.++..+|++++|+..++++++++|+++.+++.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34557778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 002729 421 HVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (887)
Q Consensus 421 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (887)
++++|+..|+++++++|+++.+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999998877665443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.01 E-value=3.4e-08 Score=96.76 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=114.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (887)
++..|..+++.|+|.+|+..|+++....|.+ ..+.+.+|.++++.|++++|+..+++.++..|++ +.+++.+|.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 4678889999999999999999998887754 6788889999999999999999999999888875 467888888
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002729 76 AWKEKG-----------DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL 144 (887)
Q Consensus 76 ~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 144 (887)
+++... ...+|+..|+..++..|++..+ .+|...+..+.. ....--+.+|..
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 766543 2346777777777777774321 111111111100 011223456777
Q ss_pred HHHcCChHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHcCCHHHHH
Q 002729 145 MKAQGLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRAL 189 (887)
Q Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 189 (887)
|.+.|.+..|+..++.+++..|+.. .++..++..|.+.|..+.|.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8888888888888888888777653 46677778888888777443
No 211
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.00 E-value=3.2e-09 Score=120.49 Aligned_cols=158 Identities=16% Similarity=0.082 Sum_probs=115.1
Q ss_pred CCCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.|..+|++ ++.+++++++|+ .|..+.+++++.++.+. +.+|+++|.++. ..+.+++..... .++++|.+.
T Consensus 284 l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~---~~~v~~~~~ 358 (476)
T cd03791 284 LQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARY---PGRVAVLIG 358 (476)
T ss_pred HHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 46778886 677888888887 58899999999988764 388999987643 234555555554 578888766
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCC------CCcccc--CCHHH
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGL------GEEMIV--NSMKE 848 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~------~~~~~~--~~~~~ 848 (887)
.+.+.....|+.+|++|-|+.++| |++.+|||++|+|||+.....+.+-+.. |. ++ ++. .|.++
T Consensus 359 ~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~------~~~~~~~~~G-~~~~~~~~~~ 431 (476)
T cd03791 359 YDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVID------YNEDTGEGTG-FVFEGYNADA 431 (476)
T ss_pred CCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeC------CcCCCCCCCe-EEeCCCCHHH
Confidence 665556678999999999988887 9999999999999997665555543332 22 34 443 56788
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHh
Q 002729 849 YEERAVSLA---LDRQKLQALTNKLKS 872 (887)
Q Consensus 849 y~~~a~~l~---~d~~~~~~~~~~~~~ 872 (887)
+.+...++. .+++.+.+++++..+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~ 458 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMA 458 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhc
Confidence 877777665 477777777766554
No 212
>PRK14098 glycogen synthase; Provisional
Probab=99.00 E-value=3.8e-09 Score=118.09 Aligned_cols=159 Identities=11% Similarity=0.070 Sum_probs=114.7
Q ss_pred CCCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.+..+|++ ++.+++++++|+ .|..+.+++++.+++. ++.+|+|+|.++. .++.+++.+++. +++|.|.|.
T Consensus 295 l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~---~~~V~~~g~ 369 (489)
T PRK14098 295 LLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEH---PEQVSVQTE 369 (489)
T ss_pred HHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHC---CCCEEEEEe
Confidence 34567886 356888998887 5999999999999875 4799999997764 256777777766 478999999
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc--CCHHHHHHHHH
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV--NSMKEYEERAV 854 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~~~~~y~~~a~ 854 (887)
.+..+....|+.+|++|-|+-+++ |++.+|||++|+|+|+.......+-+.. +..-|-++ ++. .|.+++.+...
T Consensus 370 ~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G-~l~~~~d~~~la~ai~ 446 (489)
T PRK14098 370 FTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSG-FIFHDYTPEALVAKLG 446 (489)
T ss_pred cCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCce-eEeCCCCHHHHHHHHH
Confidence 888888889999999999988888 9999999999987665443333221100 00002334 443 57788777655
Q ss_pred H---HhcCHHHHHHHHHH
Q 002729 855 S---LALDRQKLQALTNK 869 (887)
Q Consensus 855 ~---l~~d~~~~~~~~~~ 869 (887)
+ +..|++.+++++.+
T Consensus 447 ~~l~~~~~~~~~~~~~~~ 464 (489)
T PRK14098 447 EALALYHDEERWEELVLE 464 (489)
T ss_pred HHHHHHcCHHHHHHHHHH
Confidence 4 44788877777654
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.97 E-value=1.6e-07 Score=94.17 Aligned_cols=181 Identities=15% Similarity=0.043 Sum_probs=145.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHH
Q 002729 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADA---WSNLASAYMRKGRLNEAAQCCRQALALNPLLV---DAH 138 (887)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~ 138 (887)
..+..++..|..+...|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++..|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 467788899999999999999999999999999987654 48899999999999999999999999988754 477
Q ss_pred HHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002729 139 SNLGNLMKAQG------------------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (887)
Q Consensus 139 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (887)
+.+|.++...+ ...+|+..|++.++..|++..+ .+|...+..+..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~~--- 172 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLKD--- 172 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHHH---
Confidence 88887754443 1357889999999999987543 223222222211
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHhhHHHHHHHcCChHHHHHHHHHH
Q 002729 201 TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQA 262 (887)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~~ 262 (887)
.-..--+..+..|.+.|.+..|+.-++.+++..|+ .+++..+..+|...|..++|.......
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11333457889999999999999999999999887 788999999999999999998877654
No 214
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=2.8e-07 Score=106.24 Aligned_cols=215 Identities=15% Similarity=0.091 Sum_probs=144.6
Q ss_pred HHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRL-EPR----FAECYGNMANAWKEKGDIDLAIRYYLV 92 (887)
Q Consensus 18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 92 (887)
..+-|++.+..+|++...|........+.++.++|.+.+++++.. ++. ....|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 345566666677777777777777777777777777777777653 332 123444444444445555666666777
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hHH
Q 002729 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAI 170 (887)
Q Consensus 93 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 170 (887)
+.+... ....+..|..+|.+.+.+++|.++++.+++...+....|..++..+.++++-+.|...+.++++.-|. +..
T Consensus 1523 Acqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 666432 24466667777777777777777777777776666677777777777777777777777777776666 556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (887)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (887)
.....+.+-++.|+.+.+..+|+..+..+|.-.+.|.-+++.-.+.|+.+.+..+|++++...
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 666667777777777777777777777777777777777777777777777777777776653
No 215
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=9.8e-07 Score=84.48 Aligned_cols=253 Identities=17% Similarity=0.104 Sum_probs=132.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHH
Q 002729 179 FMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILY 258 (887)
Q Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~ 258 (887)
++-.|+|..++..-++..... ........+.+.|..+|++...+....... .|...+...++......++.++-+.-
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 334455555554444433322 334444455555555555543332222111 11122333333333333333333333
Q ss_pred HHHHH-hc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC
Q 002729 259 YKQAI-GC-DPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336 (887)
Q Consensus 259 ~~~~l-~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 336 (887)
+.+.+ .. ...+......-+.++.+.+++++|++..... .+.++...-..++.+..+.+-|.+.++++.+.+.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 22222 11 1122223333445566666666666655542 22334444445555666666666666666555433
Q ss_pred CchhHhhHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729 337 LSAPFNNLAVIYKQ----QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (887)
Q Consensus 337 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (887)
. +...||..+.+ .+++.+|.-+|+++-+..|..+..+...+.+...+|++++|...++.++..++++++++.++
T Consensus 170 ~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 A--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred H--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2 22233333322 24577777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCHHHH-HHHHHHHHHcCCCChH
Q 002729 413 ASAYKDSGHVEAA-IKSYKQALLLRPDFPE 441 (887)
Q Consensus 413 a~~~~~~g~~~~A-~~~~~~al~~~p~~~~ 441 (887)
..+-...|...++ .+...+.....|+.+-
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 7777777765444 3444555556666553
No 216
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.93 E-value=6.4e-08 Score=105.87 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=149.1
Q ss_pred ceeeeecCCCCCChhHHhhhHHhhcCCCCCcEEE-EEecCCCCCh-----H----------HHHHHHhhcCceEECCC-C
Q 002729 537 LRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVF-CYALSPNDGT-----E----------WRQRTQSEAEHFVDVSA-M 599 (887)
Q Consensus 537 lriGyvs~d~~~h~~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~-~ 599 (887)
+||=+|...++.-..+..+..+...+...++|+. +|..+..... . ....+-..-.+..+..+ .
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 4677777777777788888899999988899974 4554432211 0 01111111112233333 2
Q ss_pred CHHHHHHHH-HhCCCeEEEecCCcCCCCch-hhh--------hcCCCceEEeccccCCCC--------------CC---C
Q 002729 600 SSDMIAKLI-NEDKIQILINLNGYTKGARN-EIF--------AMQPAPIQVSYMGFPGTT--------------GA---S 652 (887)
Q Consensus 600 ~~~~~~~~i-~~~~~dil~~~~~~~~~~~~-~~~--------~~r~apvq~~~~g~~~t~--------------g~---~ 652 (887)
+-..+.+.| ...++||++-=..|...-.+ .++ ..+-.||..|.-.+..-| +. |
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 456777778 68899999422222110012 122 112369988832211111 00 1
Q ss_pred c--------ccE-----------E-----EecCccCCCCc-----CCC-CccceeecCCccccCCCccccccCCCCCCCC
Q 002729 653 Y--------IDY-----------L-----VTDEFVSPLRY-----AHI-YSEKLVHVPHCYFVNDYKQKNMDVLDPNCQP 702 (887)
Q Consensus 653 ~--------~d~-----------~-----~~d~~~~p~~~-----~~~-~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 702 (887)
. +|. + ..+.++.|+.. ... -.+++..+|++........ . +...+
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~-----~-~~~~~ 234 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAI-----L-AELPP 234 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccc-----c-ccccc
Confidence 1 121 0 11334445442 001 1256666776543211100 0 00011
Q ss_pred CCCCCCCCCCcEEEEecCC----CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCC
Q 002729 703 KRSDYGLPEDKFIFACFNQ----LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVA 778 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~----~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~ 778 (887)
.| .+++.++++++++ ..|..+.+++++.++ .++.+|+++|.++... .++|.+.|..
T Consensus 235 ~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~~~-------------~~~v~~~g~~ 294 (405)
T PRK10125 235 VR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSPFT-------------AGNVVNHGFE 294 (405)
T ss_pred cc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCccc-------------ccceEEecCc
Confidence 11 1234445555554 347778888888764 3578999998754311 3568888876
Q ss_pred C-cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhh
Q 002729 779 M-KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRV 827 (887)
Q Consensus 779 ~-~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~ 827 (887)
. ..+....|+.+|+|+-|+.+.| |++++|||+||+|||+-.-...++-+
T Consensus 295 ~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv 345 (405)
T PRK10125 295 TDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVL 345 (405)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhE
Confidence 4 4678889999999999988888 99999999999999976655555533
No 217
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.93 E-value=2.4e-08 Score=89.11 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=87.2
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHH
Q 002729 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANL 412 (887)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 412 (887)
..++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++.+.|++++|+..|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456777888888888888888888888887765 5678888888888899999999998888887774 5678888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729 413 ASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (887)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (887)
|.++.+.|++++|...++++++..|+++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8999999999999999999999888876544
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.92 E-value=1.3e-07 Score=92.64 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWS 105 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 105 (887)
++..++..|..++..|+|.+|++.|++++...|.. ..+.+.+|.++++.|++++|+..+++.++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46778888999999999999999999998887764 6788888999999999999999999998888775 34677
Q ss_pred HHHHHHHHc
Q 002729 106 NLASAYMRK 114 (887)
Q Consensus 106 ~la~~~~~~ 114 (887)
.+|.+++..
T Consensus 84 ~~g~~~~~~ 92 (203)
T PF13525_consen 84 MLGLSYYKQ 92 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766544
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.5e-08 Score=97.30 Aligned_cols=122 Identities=20% Similarity=0.192 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002729 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIG---RVTDAIQDYI 396 (887)
Q Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 396 (887)
.+....-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..+|.++.... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444556677778889999999999999999999999999999999999999999999998887653 4678899999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 397 RAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 397 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
+++..+|++..+.+.||..++..|++.+|...++.+++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999887654
No 220
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=2.9e-08 Score=88.66 Aligned_cols=99 Identities=18% Similarity=0.253 Sum_probs=51.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (887)
+.+|..+.+.|++++|++.|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 445555555555555555555555554433 3445555555555555555555555555544442 3445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002729 77 WKEKGDIDLAIRYYLVAIELRPNFA 101 (887)
Q Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~ 101 (887)
+...|++++|+..++++++..|++.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCCh
Confidence 5555555555555555555555443
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.91 E-value=2.7e-07 Score=91.48 Aligned_cols=229 Identities=18% Similarity=0.183 Sum_probs=131.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--cHHHHHHH
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRL----EPR--FAECYGNM 73 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l 73 (887)
+..|..++.+.++++|+....+.+.+-.+. ...+-.+..+...+|.|++++..--..+.. +.. ..+++.++
T Consensus 10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl 89 (518)
T KOG1941|consen 10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL 89 (518)
T ss_pred HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888877654322 223334556677778877776654433322 111 24567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 002729 74 ANAWKEKGDIDLAIRYYLVAIELRPNF-----ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL------VDAHSNLG 142 (887)
Q Consensus 74 a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la 142 (887)
++.+.+..++.+++.+-+..+...... ......++.++..++.++++++.|+++++...++ ..++..++
T Consensus 90 ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lg 169 (518)
T KOG1941|consen 90 ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLG 169 (518)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHH
Confidence 777777777777777776666553221 2455566777777777777777777776653222 12556666
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCC----Ch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHH
Q 002729 143 NLMKAQGLVQEAYSCYLEALRIQP----TF------AIAWSNLAGLFMESGDLNRALQYYKEAVKLK------PTFPDAY 206 (887)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~p----~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~ 206 (887)
..+....++++|.-+..++.++-. ++ ..+++.++..+..+|..-.|.++.+++.++. +-.....
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 677777777777666666655421 11 1234444555555555555555555554431 1112233
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh
Q 002729 207 LNLGNVYKALGMPQEAIMCYQRAVQ 231 (887)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (887)
..++++|...|+.+.|..-|+++..
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 4445555555555555555555443
No 222
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.90 E-value=1.6e-05 Score=85.82 Aligned_cols=409 Identities=15% Similarity=0.160 Sum_probs=204.5
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh--------------------cCCCcHH
Q 002729 9 MYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALR--------------------LEPRFAE 68 (887)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------------~~p~~~~ 68 (887)
....|+|+.|...++.. ...|+....|..++...+..|+.--|..+|...-. ...+-..
T Consensus 454 aid~~df~ra~afles~-~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~ 532 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLESL-EMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTD 532 (1636)
T ss_pred ccccCchHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCch
Confidence 45679999998877764 66787777888888877777776655555533211 1112233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002729 69 CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (887)
Q Consensus 69 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (887)
.|...+.......+|.+|...|-+- +..+ .-.-.|....++++|+.+.+.. -.|.........-..+...
T Consensus 533 fykvra~lail~kkfk~ae~ifleq-----n~te---~aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt 602 (1636)
T KOG3616|consen 533 FYKVRAMLAILEKKFKEAEMIFLEQ-----NATE---EAIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDT 602 (1636)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhc-----ccHH---HHHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 4444555555555566665555321 1111 1122344445555555443211 1222222222222333334
Q ss_pred CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHc
Q 002729 149 GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPT------------FPDAYLNLGNVYKAL 216 (887)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------------~~~~~~~l~~~~~~~ 216 (887)
|+-++|-++- ....+. ..-..+|.+.|...+|......--.+..+ ..+.|-.-|.+|.+.
T Consensus 603 ~qd~ka~elk-----~sdgd~---laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 603 GQDEKAAELK-----ESDGDG---LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred Cchhhhhhhc-----cccCcc---HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 4444332211 011110 11233444555544443322111010000 012344445555555
Q ss_pred CChHHHHHHHHHH------Hhh----CCC--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 217 GMPQEAIMCYQRA------VQT----RPN--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284 (887)
Q Consensus 217 g~~~~A~~~~~~~------~~~----~p~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 284 (887)
.++++|+++|++- +++ .|. ...-...|.-+...|+++.|+..|-++- ....-..+....+
T Consensus 675 ~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaieaai~ak 746 (1636)
T KOG3616|consen 675 HDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIEAAIGAK 746 (1636)
T ss_pred hCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHHHHhhhh
Confidence 6666666665532 221 222 1122233455566667777766665442 1122233344455
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHH
Q 002729 285 RVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEV 364 (887)
Q Consensus 285 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 364 (887)
++.+|+.+++..-... .....|-.++.-|...|+++.|.++|.++- ....-...|.+.|++++|.++-++.
T Consensus 747 ew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHh
Confidence 6666666665443321 122344556667777777777777776542 2334456666777777776666555
Q ss_pred HhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH-------------HHH------H----hcCCCc-HHHHHHHHHHHHhC
Q 002729 365 LRIDPLA-ADGLVNRGNTYKEIGRVTDAIQDY-------------IRA------I----TIRPTM-AEAHANLASAYKDS 419 (887)
Q Consensus 365 l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~-------------~~a------l----~~~p~~-~~~~~~la~~~~~~ 419 (887)
.. |+. ...|...+.-+-+.|++.+|.+.| .+. + +..|+. .+.+..++.-|...
T Consensus 818 ~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 818 HG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAE 895 (1636)
T ss_pred cC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhc
Confidence 32 322 223444455555555555444433 221 1 112322 45788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 002729 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463 (887)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 463 (887)
|+...|.+.|-++-+. ..-.++|...+-|++|.++-
T Consensus 896 g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred cChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHH
Confidence 9999999999876432 23344566666677765543
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.90 E-value=1.9e-06 Score=86.57 Aligned_cols=288 Identities=19% Similarity=0.089 Sum_probs=218.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcC
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKG 81 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g 81 (887)
-|....-.|+-..|.++-.+.-+.-..+ +-+...-++...-.|+++.|.+-|+.++.. |.. .-.+..+-......|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~G 168 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcc
Confidence 3455667788899998888776544333 455566677888899999999999998853 322 222333333446789
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHH---HHHHHHHH-HHHcCChHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL---NPLLVD---AHSNLGNL-MKAQGLVQEA 154 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~---~~~~la~~-~~~~g~~~~A 154 (887)
+.+.|+.+-+.+-+..|.-+.++.......+..|+++.|+++.+..... .++..+ +-..-+.. -.-..+...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 9999999999999999999999999999999999999999999876543 222211 22222222 2223457889
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH---Hh
Q 002729 155 YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRA---VQ 231 (887)
Q Consensus 155 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 231 (887)
...-.++.++.|+...+-..-+..+++.|+..++-.+++.+.+..|. +++ +..|....--+.++.-++++ .+
T Consensus 249 r~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 249 RDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 99999999999999999899999999999999999999999998876 333 33444443334444444444 44
Q ss_pred hCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 002729 232 TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV-GRVDEAIQCYNQCLSL 299 (887)
Q Consensus 232 ~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 299 (887)
+.|+ .+.....+..-+..|++..|..--+.+....|... ++..++.+-... |+-.++...+.++++-
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5666 88889999999999999999999999999998866 788888887665 9999999999999874
No 224
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.88 E-value=7.8e-08 Score=88.81 Aligned_cols=116 Identities=28% Similarity=0.201 Sum_probs=65.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChH
Q 002729 45 QLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLN 118 (887)
Q Consensus 45 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 118 (887)
..++...+...++++++.+|+. ..+.+.+|.++...|++++|...|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555555556665555554 3445556666666666666666666666554332 234555666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 119 EAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (887)
Q Consensus 119 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (887)
+|+..++.. ...+..+.++..+|.++...|++++|...|+++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666442 223334445556666666666666666666554
No 225
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.87 E-value=8e-09 Score=114.86 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=115.7
Q ss_pred CCCCCCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----ceEEEecCCh----hhHHHHHHHHH----Hc----CC-
Q 002729 707 YGLPEDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAV----AQ----GV- 767 (887)
Q Consensus 707 ~~l~~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~----~~----g~- 767 (887)
.+++.+.+++++.+|+ .|..+..++++.+++++.|+ .+|+++|.+. .....+++.+. +. |.
T Consensus 258 ~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~ 337 (460)
T cd03788 258 RERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTL 337 (460)
T ss_pred HHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3455677888888887 49999999999999999997 4677776432 11233443333 22 21
Q ss_pred CCCcEEE-cCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCc----eeeecccchhhhhHHHHHHhcCCCCcc
Q 002729 768 QPDQIIF-TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEM 841 (887)
Q Consensus 768 ~~~r~~~-~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~g~~~~~ 841 (887)
+-..|+| .|.++.++..++|+.+|+++-|+...| |++++|||+||+| ||+-.. .|.+-. |.++ +
T Consensus 338 ~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~------~G~~~~---~~~g-~ 407 (460)
T cd03788 338 DWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEF------AGAAEE---LSGA-L 407 (460)
T ss_pred CceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEecc------ccchhh---cCCC-E
Confidence 1133554 577899999999999999999988888 9999999999999 553211 121111 3445 5
Q ss_pred cc--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcccCCCCCcCCcc
Q 002729 842 IV--NSMKEYEERAVSLALD-RQKLQALTNKLKSVRLTCPLFDTARWV 886 (887)
Q Consensus 842 ~~--~~~~~y~~~a~~l~~d-~~~~~~~~~~~~~~~~~~~l~d~~~~~ 886 (887)
++ .|.+++.+...++.++ ++.++.+.++.++... -||..+|+
T Consensus 408 lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~ 452 (460)
T cd03788 408 LVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWA 452 (460)
T ss_pred EECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHH
Confidence 54 5899999988888874 5677777777777653 36655553
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.2e-08 Score=95.58 Aligned_cols=121 Identities=26% Similarity=0.262 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL---VQEAYSCYL 159 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 159 (887)
.++-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..++.++..+.. ..++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34455556666677777777777777777777777777777777777777777777777777665433 456777777
Q ss_pred HHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 002729 160 EALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP 203 (887)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (887)
++++.+|.+..+.+.++..+++.|++.+|...++.+++..|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77777777777777777777777777777777777777766543
No 227
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.85 E-value=1.3e-08 Score=111.73 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=107.1
Q ss_pred CCCCCCCCCCcEE-EEecC-CCC---CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHc-CCCCCcEEEcC
Q 002729 703 KRSDYGLPEDKFI-FACFN-QLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQ-GVQPDQIIFTD 776 (887)
Q Consensus 703 ~r~~~~l~~~~~~-~~~~~-~~~---k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~r~~~~~ 776 (887)
.|.++|++++.++ +...+ +.. ++.+.+++++..+.++.|+.++++++.++..++.+++...+. |+. +.+..
T Consensus 176 ~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~---v~~~~ 252 (380)
T PRK00025 176 ARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLE---VTLLD 252 (380)
T ss_pred HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCC---eEEEc
Confidence 4667899876554 33333 322 457888899988888889988888876444466777777777 663 55543
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHH---hcCC----------CCcccc
Q 002729 777 VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL---ATGL----------GEEMIV 843 (887)
Q Consensus 777 ~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~---~~g~----------~~~~~~ 843 (887)
.+...+|+.+|+++-+ +|++++|||++|+|||+.+.-..-....+..+. ..|+ ++ ++.
T Consensus 253 ----~~~~~~~~~aDl~v~~----sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~ 323 (380)
T PRK00025 253 ----GQKREAMAAADAALAA----SGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPE-LLQ 323 (380)
T ss_pred ----ccHHHHHHhCCEEEEC----ccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchh-hcC
Confidence 3567789999999965 477788999999999987443222211111111 1122 23 333
Q ss_pred --CCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729 844 --NSMKEYEERAVSLALDRQKLQALTNKLKS 872 (887)
Q Consensus 844 --~~~~~y~~~a~~l~~d~~~~~~~~~~~~~ 872 (887)
.|+++..+....+.+|++.++.+++.+++
T Consensus 324 ~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~ 354 (380)
T PRK00025 324 EEATPEKLARALLPLLADGARRQALLEGFTE 354 (380)
T ss_pred CCCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46789999999999999999999988643
No 228
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=1.4e-08 Score=80.24 Aligned_cols=67 Identities=37% Similarity=0.535 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Q 002729 371 AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG-HVEAAIKSYKQALLLRP 437 (887)
Q Consensus 371 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 437 (887)
++..|..+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677777777777777777777777777777777777777777777777 57777777777777766
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.85 E-value=1.8e-05 Score=79.75 Aligned_cols=290 Identities=17% Similarity=0.043 Sum_probs=222.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHc
Q 002729 38 LLGAIYYQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAYMRK 114 (887)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 114 (887)
.-|.+....|+-..|.+.-.+.-++-..+ +-+...-++.-.-.|++++|.+-|+.++. +|.. .--+..|-.--.+.
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 44666777899999999988887654444 44556667778889999999999999986 3331 11233333344578
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CCChH-----HHHHHHHHHHHHcCCHH
Q 002729 115 GRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI---QPTFA-----IAWSNLAGLFMESGDLN 186 (887)
Q Consensus 115 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~-----~~~~~la~~~~~~g~~~ 186 (887)
|..+.|+.+-+.+....|....++...-...+..|+++.|+++.+..... .++.. ..+...+... -.-+..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChH
Confidence 99999999999999999999999988889999999999999999876543 22221 1222222222 234688
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHH---H
Q 002729 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQA---I 263 (887)
Q Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~---l 263 (887)
.|...-.++.++.|+....-..-+..+.+.|+..++-.+++.+.+..|....+ ..|....--+.++.-++++ .
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHHHH
Confidence 89999999999999999988999999999999999999999999998885543 3344433334444444444 4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHc-CChhHHHHHHHHHHhcc
Q 002729 264 GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW-NMLPAAASYYKATLAVT 334 (887)
Q Consensus 264 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 334 (887)
.+.|++.+.....+...+..|++..|..--+.+....|. ..++..++++.... |+-.++..++.+++..-
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 679999999999999999999999999999999988876 45666777776655 99999999999998753
No 230
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=3.2e-06 Score=81.07 Aligned_cols=235 Identities=15% Similarity=0.088 Sum_probs=98.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 002729 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119 (887)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 119 (887)
.+-++..|+|..++..-++..... ...+....+.+.|..+|.+..-+......- .....+...++.....-++.++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 344566677777766665544332 455556666666666666654433322211 1112333334444333344333
Q ss_pred HHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 120 AAQCCRQALAL-N-PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (887)
Q Consensus 120 A~~~~~~~l~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (887)
-+.-..+.+.. . ..+......-+.++...|++++|++...+. .+.++...-..++.+..+.+-|.+.++++.+
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33332222221 1 112223333344455555555555544431 1223333333444444455555555555444
Q ss_pred hCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHh-hCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 002729 198 LKPTFPDAYLNLGNVYKAL----GMPQEAIMCYQRAVQ-TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEA 272 (887)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 272 (887)
.+.+ .++..|+..+.+. +++.+|.-+|+++-+ ..|+....+..+.+...++++++|...++.++..+++++++
T Consensus 166 ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 166 IDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred cchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 3322 2233333333221 233344444444433 22223344444444444444444444444444444444444
Q ss_pred HHHHHHHHHHcCC
Q 002729 273 YNNLGNALKDVGR 285 (887)
Q Consensus 273 ~~~la~~~~~~g~ 285 (887)
+.++..+-...|.
T Consensus 244 L~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 244 LANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHhCC
Confidence 4444333333333
No 231
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=5e-06 Score=85.91 Aligned_cols=459 Identities=15% Similarity=0.092 Sum_probs=269.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHH-HHhcCCHHHHHHHHHHHHhc-----CC----------CcH
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAI-YYQLHDYDMCIARNEEALRL-----EP----------RFA 67 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~-----~p----------~~~ 67 (887)
..+...+..++|+..++++..+-..+..+...++..+.+ +++.|... -...+++...+ .| +..
T Consensus 22 ~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq-~~~ll~el~aL~~~~~~~~~~~~gld~~~~t 100 (696)
T KOG2471|consen 22 CQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ-HSVLLKELEALTADADAPGDVSSGLSLKQGT 100 (696)
T ss_pred HHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch-hHHHHHHHHHHHHhhccccchhcchhhhcch
Confidence 456667788999999999998887776665555555544 44444432 22222222111 11 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cH-HHHHHHHHHHHHcCChHHHHHHHH---HHHHhC---C--C-
Q 002729 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPN----FA-DAWSNLASAYMRKGRLNEAAQCCR---QALALN---P--L- 133 (887)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~-~~~~~la~~~~~~g~~~~A~~~~~---~~l~~~---p--~- 133 (887)
..++..|.+++....+..|++........-.. .+ ..-...-..+....+.++|+.++. +++... + +
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH 180 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 67778888888888888888776665543211 11 112223334445556666665543 222210 0 0
Q ss_pred ------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHH
Q 002729 134 ------------------------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRAL 189 (887)
Q Consensus 134 ------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 189 (887)
...+.......+....+...+..-.+.+.....+.+.+....+..++..|++.+|.
T Consensus 181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~ 260 (696)
T KOG2471|consen 181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAM 260 (696)
T ss_pred cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHH
Confidence 01123333444555566666666666666666778888888899999999999998
Q ss_pred HHHHHHH-hhCCC---C-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------CC----------ChhHHhh
Q 002729 190 QYYKEAV-KLKPT---F-----PDAYLNLGNVYKALGMPQEAIMCYQRAVQT---------RP----------NAIAFGN 241 (887)
Q Consensus 190 ~~~~~~l-~~~~~---~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p----------~~~~~~~ 241 (887)
+.+...- ...+. . --.++++|.++++.|.|.-+..+|.++++. .| ..+..++
T Consensus 261 KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN 340 (696)
T KOG2471|consen 261 KLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN 340 (696)
T ss_pred HHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh
Confidence 8876542 12222 1 125688999999999999999999998851 11 2567788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHH--H--------------Hhc---
Q 002729 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV---GRVDEAIQCYNQ--C--------------LSL--- 299 (887)
Q Consensus 242 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~--a--------------l~~--- 299 (887)
.|..|...|++-.|.++|.++....-.++..|..++.++... |-.++......+ . ++.
T Consensus 341 cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~ 420 (696)
T KOG2471|consen 341 CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTY 420 (696)
T ss_pred hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccce
Confidence 899999999999999999999988888888999999888643 222222211111 0 000
Q ss_pred --CCC---ChHHHHhHHHHHHHcCCh-----hHHHHHHHHHHhc----------------------------cC-CC---
Q 002729 300 --QPS---HPQALTNLGNIYMEWNML-----PAAASYYKATLAV----------------------------TT-GL--- 337 (887)
Q Consensus 300 --~p~---~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~----------------------------~~-~~--- 337 (887)
.+. -+..-..++.+..+.+-+ ..--..+.-+... .| ..
T Consensus 421 ~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~ 500 (696)
T KOG2471|consen 421 VELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSA 500 (696)
T ss_pred eccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcch
Confidence 000 011111222222211100 0000001000000 00 01
Q ss_pred --------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHH-----
Q 002729 338 --------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN-----TYKEIGRVTDAIQDYIRAI----- 399 (887)
Q Consensus 338 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~al----- 399 (887)
..++-.++.+-...|+.-.|+..-++.++.. +-..++..+|. ++.-+.+..+|...+.--+
T Consensus 501 ~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~-~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~ 579 (696)
T KOG2471|consen 501 FEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLA-DLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDD 579 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcc
Confidence 1124456677778899999999999988753 44445555544 4455677777776554311
Q ss_pred -h-----------------cCCC----------c-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CChHHHH
Q 002729 400 -T-----------------IRPT----------M-----AEAHANLASAYKDSGHVEAAIKSYKQALLLRP--DFPEATC 444 (887)
Q Consensus 400 -~-----------------~~p~----------~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~ 444 (887)
. ++|. . ...+++||.++.-+|++++|..++..+..+-+ .++.+..
T Consensus 580 f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~ 659 (696)
T KOG2471|consen 580 FKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATV 659 (696)
T ss_pred cccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHH
Confidence 0 0111 1 23578899999999999999999999888877 5555555
Q ss_pred HHHHHhhhcCChhhHhHHHH
Q 002729 445 NLLHTLQCVCSWEDRDRMFS 464 (887)
Q Consensus 445 ~l~~~~~~~g~~~~a~~~~~ 464 (887)
.-...-...|+..++...++
T Consensus 660 lavyidL~~G~~q~al~~lk 679 (696)
T KOG2471|consen 660 LAVYIDLMLGRSQDALARLK 679 (696)
T ss_pred HHHHHHHhcCCCcchHHHHH
Confidence 44444555666666554443
No 232
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.84 E-value=3.5e-08 Score=83.87 Aligned_cols=99 Identities=34% Similarity=0.619 Sum_probs=82.8
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 002729 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (887)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (887)
++..+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.++++++..|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 002729 420 GHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 420 g~~~~A~~~~~~al~~~p~ 438 (887)
|++++|...++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877663
No 233
>PHA01630 putative group 1 glycosyl transferase
Probab=98.84 E-value=2.9e-08 Score=104.95 Aligned_cols=141 Identities=10% Similarity=0.065 Sum_probs=99.9
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 714 ~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
++++..++ ..|..+.++++|..+.++.|+.+++++|.++. ..++ .++. . +.+.++.++...+|+.+|
T Consensus 143 ~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~-~~~l------~~~~-~---~~~~v~~~~l~~~y~~aD 211 (331)
T PHA01630 143 CVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML-DPRL------FGLN-G---VKTPLPDDDIYSLFAGCD 211 (331)
T ss_pred EEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc-chhh------cccc-c---eeccCCHHHHHHHHHhCC
Confidence 45444444 57999999999999998889999999985443 2111 2331 1 245578889999999999
Q ss_pred EEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCC--------------------CccccCCHHHHH
Q 002729 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLG--------------------EEMIVNSMKEYE 850 (887)
Q Consensus 792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~--------------------~~~~~~~~~~y~ 850 (887)
+++-|+.++| |++.+|||++|+|||+.....+.+-+.. |.+ +.++..+.++..
T Consensus 212 v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~------~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~ 285 (331)
T PHA01630 212 ILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLS------NLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAY 285 (331)
T ss_pred EEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccC------CCceEEeeecccccccccCCcccccccCCCHHHHH
Confidence 9999988888 9999999999999998766555443322 211 213445778888
Q ss_pred HHHHHHhcC---HHHHHHHHHHHH
Q 002729 851 ERAVSLALD---RQKLQALTNKLK 871 (887)
Q Consensus 851 ~~a~~l~~d---~~~~~~~~~~~~ 871 (887)
+.++++..| ++.++.++...+
T Consensus 286 ~~ii~~l~~~~~~~~~~~~~~~~~ 309 (331)
T PHA01630 286 QKLLEALANWTPEKKKENLEGRAI 309 (331)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888887 455555555443
No 234
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.83 E-value=1.2e-07 Score=95.76 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=83.6
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHH-hccCCcEE
Q 002729 715 IFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR-RSSLADLF 793 (887)
Q Consensus 715 ~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~-~~~~~d~~ 793 (887)
.+|.+ ...|..+.+++++.++.++.|+.+++++|.+.. ...........+. .++|.+.|..+..+... ++..+|++
T Consensus 109 ~~g~~-~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~di~ 185 (229)
T cd01635 109 FVGRL-APEKGLDDLIEAFALLKERGPDLKLVIAGDGPE-REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAADVF 185 (229)
T ss_pred EEEee-cccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC-hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcCCEE
Confidence 34443 445999999999999999899999999997665 4344444566676 58999999986555444 45559999
Q ss_pred ecCCCCCC-chhHHHHHHhCCceeeecccchhh
Q 002729 794 LDTPLCNA-HTTGTDILWAGLPMITLPLEKMAT 825 (887)
Q Consensus 794 ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~ 825 (887)
+-|...+| |++++|||++|+|||+.....+.+
T Consensus 186 l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e 218 (229)
T cd01635 186 VLPSLREGFGLVVLEAMACGLPVIATDVGGPPE 218 (229)
T ss_pred EecccccCcChHHHHHHhCCCCEEEcCCCCcce
Confidence 99976666 999999999999999877766554
No 235
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=0.00029 Score=73.34 Aligned_cols=426 Identities=14% Similarity=0.103 Sum_probs=270.0
Q ss_pred hhHHHHHHHhcC--CHHHHHHHHHHHHhhCCCc---hhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC---CCc----HH
Q 002729 2 HMALAHQMYKSG--SYKQALEHSNSVYERNPLR---TDNLLLLGAIY-YQLHDYDMCIARNEEALRLE---PRF----AE 68 (887)
Q Consensus 2 ~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~---p~~----~~ 68 (887)
++.+|..+-..| +..+++++++.++...|.+ +.....+|..+ ....+.+.|...++++..+. |.. .+
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 456788888888 9999999999998877643 34556677665 45689999999999997653 332 46
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC---CHHHHH
Q 002729 69 CYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFA----DAWSNLASAYMRKGRLNEAAQCCRQALALN-PL---LVDAHS 139 (887)
Q Consensus 69 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~---~~~~~~ 139 (887)
++..++.+|.... .+..|...+.++++...+.+ ...+.+++.+.-..++..|.+.+.-..+.. +. .....+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~f 169 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHH
Confidence 7788899998877 88999999999999876654 356778889989999999998743322111 11 111222
Q ss_pred H--HHHHHHHcCChHHHHH---HHHHHHhhCCChH---H----HHHHHH-HHHHHcCCHHHHHHHHHHHHhh----CCC-
Q 002729 140 N--LGNLMKAQGLVQEAYS---CYLEALRIQPTFA---I----AWSNLA-GLFMESGDLNRALQYYKEAVKL----KPT- 201 (887)
Q Consensus 140 ~--la~~~~~~g~~~~A~~---~~~~al~~~p~~~---~----~~~~la-~~~~~~g~~~~A~~~~~~~l~~----~~~- 201 (887)
. .+.++....+..+... ...++.+....|+ + .+..+- ..|...|+...+...+++..+. .+.
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~ 249 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS 249 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC
Confidence 2 2233333334333333 3344443322221 1 222222 2344557766666655544321 110
Q ss_pred -----------CHH-----------HHHHHHHH--HHHcCChHHHHHHHHHHHhhCC-------C--------hhHHhhH
Q 002729 202 -----------FPD-----------AYLNLGNV--YKALGMPQEAIMCYQRAVQTRP-------N--------AIAFGNL 242 (887)
Q Consensus 202 -----------~~~-----------~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p-------~--------~~~~~~l 242 (887)
.+. ++..+... -...|-+++|.++-++++.... . ...+..+
T Consensus 250 ~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~i 329 (629)
T KOG2300|consen 250 RGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHI 329 (629)
T ss_pred CCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 011 11111111 1134667777777777765311 1 1233345
Q ss_pred HHHHHHcCChHHHHHHHHHHHh---cCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C--hHHHHh
Q 002729 243 ASTYYERGQADMAILYYKQAIG---CDPR-------FLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS-H--PQALTN 309 (887)
Q Consensus 243 a~~~~~~g~~~~A~~~~~~~l~---~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~ 309 (887)
+.+-.-.|++.+|++....+.+ ..|. .+.....+|......+.++.|...|..+.+.... + .....+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 5566678999999998888874 3343 2346777888888889999999999999887433 2 234567
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCC----------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC-C-----HH
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVTTGL----------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL-A-----AD 373 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~ 373 (887)
++..|.+.++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++.... + .-
T Consensus 410 lAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~ 486 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTAC 486 (629)
T ss_pred HHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 88999997776655555444 34442 234566677788999999999999999987521 1 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHH---HHHHHHHHHhCCC--HHHHHHHHH
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIR---PTMAEA---HANLASAYKDSGH--VEAAIKSYK 430 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~---~~~la~~~~~~g~--~~~A~~~~~ 430 (887)
.+..++.+....|+..++.+...-+++.. |+.+.. ...+-.+|...|+ .+...+.|.
T Consensus 487 ~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 487 SLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 66778899999999999999888877653 444332 2334455666665 444444444
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.82 E-value=6.5e-06 Score=83.80 Aligned_cols=222 Identities=28% Similarity=0.405 Sum_probs=149.0
Q ss_pred CChHHHHHHHHHHHhhCCC---hhHHhhHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002729 217 GMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIG--CDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~ 291 (887)
+....+...+.......+. .......+..+...+++..+...+..... ..+.....+...+..+...+++.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444444433 34555555556666666666666666554 455555566666666666666666666
Q ss_pred HHHHHHhcCCCChHHHHhHHH-HHHHcCChhHHHHHHHHHHhccC---CCchhHhhHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 292 CYNQCLSLQPSHPQALTNLGN-IYMEWNMLPAAASYYKATLAVTT---GLSAPFNNLAVIYKQQGNYADAISCYNEVLRI 367 (887)
Q Consensus 292 ~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 367 (887)
.+.++....+.+......... ++...|+++.|...+++++...+ .....+...+..+...+++++|+..+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 666666655555444444444 66667777777777777665444 23444555555567778888888888888888
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 368 DPL-AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 368 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
.+. ....+..++..+...+++++|+..+..++...|.....+..++..+...++.+++...+.++++..|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 877 67788888888888888888888888888888876667777777777777788888888888888876
No 237
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=1.2e-07 Score=90.47 Aligned_cols=94 Identities=28% Similarity=0.314 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLA 108 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 108 (887)
....++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455556666666666666666666665544432 345555555555555555555555555555555555555555
Q ss_pred HHHHHcCChHHHHHHHH
Q 002729 109 SAYMRKGRLNEAAQCCR 125 (887)
Q Consensus 109 ~~~~~~g~~~~A~~~~~ 125 (887)
.++...|+...+...++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 55555555444443333
No 238
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.82 E-value=1.1e-08 Score=84.34 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=61.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCC--chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002729 11 KSGSYKQALEHSNSVYERNPL--RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIR 88 (887)
Q Consensus 11 ~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 88 (887)
.+|+|++|+..++++++.+|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 367888888888888887774 455666778888888888888888887 66777777777777888888888888888
Q ss_pred HHHHH
Q 002729 89 YYLVA 93 (887)
Q Consensus 89 ~~~~a 93 (887)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77764
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.82 E-value=1.9e-05 Score=80.34 Aligned_cols=223 Identities=33% Similarity=0.388 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729 46 LHDYDMCIARNEEALRLEPR--FAECYGNMANAWKEKGDIDLAIRYYLVAIE--LRPNFADAWSNLASAYMRKGRLNEAA 121 (887)
Q Consensus 46 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (887)
.+.+..+...+.......+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666777777777766665 366677777777777777777777777776 56666677777777777777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 122 QCCRQALALNPLLVDAHSNLGN-LMKAQGLVQEAYSCYLEALRIQP---TFAIAWSNLAGLFMESGDLNRALQYYKEAVK 197 (887)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (887)
..+.+++...+........... ++...|++++|...+.+++...| .........+..+...+++++++..+.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777777766665444444444 67777777777777777766554 3444455555556666777777777777777
Q ss_pred hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729 198 LKPT-FPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (887)
Q Consensus 198 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (887)
..+. ....+..++..+...+++++|...+..++...|. ...+..++..+...+..+++...+.+.+...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7666 4666666667777666667777776666666665 444445555555555566666666666655554
No 240
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.81 E-value=1.2e-07 Score=90.30 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=86.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Q 002729 8 QMYKSGSYKQALEHSNSVYERNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR---FAECYGNMANAWKEKGD 82 (887)
Q Consensus 8 ~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~ 82 (887)
-++-.++|..+...+.++++..+.+ ...++.+|.++...|++++|+..|++++...|+ .+.++..+|.++...|+
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE 87 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence 3455666788888887776655544 667788899999999999999999999887665 34588889999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (887)
+++|+..++++++.+|.....+..++.++...|
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999999999888888888888888887433
No 241
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.81 E-value=1.1e-06 Score=91.26 Aligned_cols=178 Identities=25% Similarity=0.364 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHcCChHHHH
Q 002729 48 DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRP--N----FADAWSNLASAYMRKGRLNEAA 121 (887)
Q Consensus 48 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~g~~~~A~ 121 (887)
++++|...|+++ |.+|...|++++|...|.++.+..- + -...+...+.+|.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666555554 4455556666666666655543210 0 112233334444333 666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC
Q 002729 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES-GDLNRALQYYKEAVKLKP 200 (887)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~ 200 (887)
.++++++. +|...|++..|... +..+|.+|... |++++|++.|+++.+...
T Consensus 95 ~~~~~A~~--------------~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 95 ECYEKAIE--------------IYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHH--------------HHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------HHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 66666543 33344444443322 33345555555 566666666666655421
Q ss_pred CC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--------hhHHhhHHHHHHHcCChHHHHHHHHHHHhcC
Q 002729 201 TF------PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN--------AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (887)
Q Consensus 201 ~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 266 (887)
.. ...+..++.++...|+|++|++.|++.....-+ ...+...+.+++..|+...|...+++....+
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 11 124455666666666666666666666553211 1223444555556666666666666666555
Q ss_pred CC
Q 002729 267 PR 268 (887)
Q Consensus 267 p~ 268 (887)
|.
T Consensus 227 ~~ 228 (282)
T PF14938_consen 227 PS 228 (282)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 242
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.81 E-value=5.2e-08 Score=82.80 Aligned_cols=95 Identities=34% Similarity=0.523 Sum_probs=50.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+...+..++.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555545555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcC
Q 002729 83 IDLAIRYYLVAIELR 97 (887)
Q Consensus 83 ~~~A~~~~~~al~~~ 97 (887)
+++|...+.++++..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 555555555554443
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.1e-08 Score=98.91 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=55.3
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (887)
+++++.++.+++++.+|+...+++|+++|+|..+++..|.++..+|+++.|+..|++++++.|+|..+...|..+-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666555555555555544
Q ss_pred CHHH-HHHHHHHHHHc
Q 002729 421 HVEA-AIKSYKQALLL 435 (887)
Q Consensus 421 ~~~~-A~~~~~~al~~ 435 (887)
++.+ ..+.|.+++..
T Consensus 340 ~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4333 25555555544
No 244
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=4.3e-07 Score=83.73 Aligned_cols=102 Identities=20% Similarity=0.213 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002729 68 ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKA 147 (887)
Q Consensus 68 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 147 (887)
..++..|..|-..|-+.-|.-.|.+++.+.|+-+++++.+|..+...|+++.|.+.|...++++|...-+..+.|..++-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 34445555555555555555555555555665555555565555555666666666666666665555555555555555
Q ss_pred cCChHHHHHHHHHHHhhCCChH
Q 002729 148 QGLVQEAYSCYLEALRIQPTFA 169 (887)
Q Consensus 148 ~g~~~~A~~~~~~al~~~p~~~ 169 (887)
-|+++-|.+.+.+..+.+|+++
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCCh
Confidence 5566655555555555555554
No 245
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=1.3e-07 Score=90.13 Aligned_cols=102 Identities=26% Similarity=0.366 Sum_probs=62.0
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 339 APFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASA 415 (887)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 415 (887)
..+..+|.++..+|++++|+..|++++.+.|+. +.++.++|.++...|++++|++.+++++++.|.....+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 334555666666666666666666666554432 23566666666666666666666666666666666655555555
Q ss_pred HH-------hCCCHH-------HHHHHHHHHHHcCCCCh
Q 002729 416 YK-------DSGHVE-------AAIKSYKQALLLRPDFP 440 (887)
Q Consensus 416 ~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 440 (887)
+. ..|+++ +|..+|++++..+|++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 55 555554 66666777777777654
No 246
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.79 E-value=3.7e-08 Score=107.10 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=112.3
Q ss_pred CCCCCCCCCCcEEEEec--CCC---CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLPEDKFIFACF--NQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~~--~~~---~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.|+.+|++++.++++.+ ++. .|+.+.++++...+.+..|+.++++.+.+......+.+.....|. ..+|.+.+.
T Consensus 181 ~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 259 (385)
T TIGR00215 181 AREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGP-DLQLHLIDG 259 (385)
T ss_pred HHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCC-CCcEEEECc
Confidence 56778998776655433 243 368899999988888888998887655443335566666666776 457766643
Q ss_pred CCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHH------------HHhcC-CCCcccc-
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSL------------CLATG-LGEEMIV- 843 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~------------l~~~g-~~~~~~~- 843 (887)
+....|..+|+++-++ |++|+|++++|+|+|....-..-+...+.. +..-| .+| ++-
T Consensus 260 ----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pe-l~q~ 330 (385)
T TIGR00215 260 ----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPE-LLQE 330 (385)
T ss_pred ----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchh-hcCC
Confidence 2235789999999665 777889999999988874333333332222 22222 233 553
Q ss_pred -CCHHHHHHHHHHHhcCH----HHHHHHHHHHHhhcc
Q 002729 844 -NSMKEYEERAVSLALDR----QKLQALTNKLKSVRL 875 (887)
Q Consensus 844 -~~~~~y~~~a~~l~~d~----~~~~~~~~~~~~~~~ 875 (887)
.+++...+.+.+|..|+ +.++.+++.+++.+.
T Consensus 331 ~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 367 (385)
T TIGR00215 331 ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQ 367 (385)
T ss_pred CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 46888999999999999 999999998887653
No 247
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.79 E-value=2.3e-07 Score=85.43 Aligned_cols=195 Identities=19% Similarity=0.186 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 002729 101 ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFM 180 (887)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 180 (887)
+..++..|..|-..|-+.-|.--|.+++.+.|+.+++++.+|..+...|+++.|.+.|+..++++|.+..+..+.|..++
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 44666778888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHhhCCChhHHhhHHHHHHHcCChHHHHHHH
Q 002729 181 ESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQ-RAVQTRPNAIAFGNLASTYYERGQADMAILYY 259 (887)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~ 259 (887)
--|++.-|.+-+.+..+.+|++|.--..+- +-...-++.+|...+. ++...+.+...|.. ...|...=..+ ..+
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~i-V~~yLgkiS~e---~l~ 219 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNI-VEFYLGKISEE---TLM 219 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhccHhhhhHHH-HHHHHhhccHH---HHH
Confidence 999999999999999999999875322221 1123345666665544 34333323222222 22222111111 223
Q ss_pred HHHHhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 260 KQAIGCDPRF-------LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQ 300 (887)
Q Consensus 260 ~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (887)
+++.....++ .++++.+|..+...|+.++|...|+-++..+
T Consensus 220 ~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 220 ERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3333222222 3578888888999999999999988887654
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.8e-08 Score=97.42 Aligned_cols=109 Identities=22% Similarity=0.289 Sum_probs=55.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC----Cc-----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNP----LR-----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC 69 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 69 (887)
.|+.+++.|+|..|...|++++..-. .+ ..++++++.|+.++++|.+|+..+++++..+|+|..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 45667777777777777777654221 00 1233444445555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (887)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (887)
++..|.++...|+|+.|+..|+++++..|+|..+...+..+..+
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444444444444433
No 249
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=2.1e-07 Score=88.89 Aligned_cols=118 Identities=25% Similarity=0.292 Sum_probs=94.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 002729 65 RFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---ADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141 (887)
Q Consensus 65 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 141 (887)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456778899999999999999999999998876653 46888899999999999999999999999888888888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729 142 GNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (887)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (887)
|.++...|+...+...+++++. .+++|++.+++++..+|++
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 8888888887776665555432 2567777777777777665
No 250
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.79 E-value=4.7e-08 Score=107.65 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=113.2
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCc----eEEEecCCh----hhHHHHHHHHHHc--------CC-CCCcE
Q 002729 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNS----ALWLLRFPA----AGEMRLRAYAVAQ--------GV-QPDQI 772 (887)
Q Consensus 712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~----~l~~~~~~~----~~~~~l~~~~~~~--------g~-~~~r~ 772 (887)
+..++++..|+ .|..+..++++.+++++.|+. +|++++.+. .....+++.+++. |- +-.-|
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 56788888887 499999999999999999974 466665321 1134565555543 21 11114
Q ss_pred EE-cCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCc----eeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729 773 IF-TDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMIV--N 844 (887)
Q Consensus 773 ~~-~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~ 844 (887)
++ .+.++.++..++|+.+||+|-|+-..| |++++|||+||+| ||.-.....+. .+ + +. +++ .
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~-----~l---~-~g-llVnP~ 407 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ-----EL---N-GA-LLVNPY 407 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH-----Hh---C-Cc-EEECCC
Confidence 44 557788999999999999999988899 9999999999999 66432211111 12 2 33 443 6
Q ss_pred CHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcccCCCCCcCCcc
Q 002729 845 SMKEYEERAVSLAL-DRQKLQALTNKLKSVRLTCPLFDTARWV 886 (887)
Q Consensus 845 ~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~~~~~l~d~~~~~ 886 (887)
|.++..+...++.+ +++.+++..++++++... +|..+|+
T Consensus 408 d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~ 447 (456)
T TIGR02400 408 DIDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWR 447 (456)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHH
Confidence 88888887777776 678888888888887543 5655553
No 251
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.77 E-value=3e-08 Score=78.27 Aligned_cols=67 Identities=36% Similarity=0.561 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRP 98 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 98 (887)
++..|..+|.+++..|++++|+..|+++++.+|+++.+++.+|.++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555556666666666666666666666666666666666666666665 45666666666655554
No 252
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.77 E-value=2.6e-08 Score=77.48 Aligned_cols=63 Identities=35% Similarity=0.593 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF 66 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 66 (887)
.+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666666666666666666666666666666666654
No 253
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.77 E-value=3.8e-07 Score=84.20 Aligned_cols=123 Identities=23% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAW 77 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 77 (887)
..+...+..++..++...++++.+.+|++ ..+.+.+|.+++..|++++|+..|++++...|+. ..+.+.++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 33444455666666666666666666655 4455666666666666666666666666655443 34566666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQA 127 (887)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (887)
...|++++|+..++.. ...+..+.++..+|.++...|++++|+..|+++
T Consensus 96 ~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 96 LQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666666666666552 223334556666666666666666666666655
No 254
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.76 E-value=4.9e-07 Score=93.84 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=68.9
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHhccCCC------chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHH
Q 002729 310 LGNIYMEW-NMLPAAASYYKATLAVTTGL------SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA-------ADGL 375 (887)
Q Consensus 310 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 375 (887)
+|.+|... |++++|+++|+++.+..... ...+..++.++.+.|+|++|++.|++.....-++ ...+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 44444444 55555555555555442111 2234556777777777777777777776542111 1244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Q 002729 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTM-----AEAHANLASAYKDS--GHVEAAIKSYKQALLL 435 (887)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~--g~~~~A~~~~~~al~~ 435 (887)
+..+.|+...|+...|.+.+++....+|.. ......|..++... ..+++|+.-|.++..+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 556667777777777777777777776642 33455555555543 3566666666655444
No 255
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.75 E-value=4.2e-08 Score=76.34 Aligned_cols=64 Identities=27% Similarity=0.376 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 377 NRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 377 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
.+|..+.+.|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566677777777777777777777777777777777777777777777777777777777654
No 256
>PRK11906 transcriptional regulator; Provisional
Probab=98.75 E-value=9.3e-07 Score=92.85 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCcH
Q 002729 37 LLLGAIYYQLHD---YDMCIARNEEAL---RLEPRFAECYGNMANAWKEK---------GDIDLAIRYYLVAIELRPNFA 101 (887)
Q Consensus 37 ~~la~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~ 101 (887)
+..|...+..+. .+.|+.+|.+++ ..+|..+.+|..++.|+... .+..+|.+..+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 444444433332 244555555555 55555555555555555432 122344444455555555555
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729 102 DAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (887)
Q Consensus 102 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (887)
.+...+|.++...++++.|...|++++.++|+...+++..|.+....|+.++|.+.++++++++|.-
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 5555555555555555555555555555555555555555555555555555555555555555443
No 257
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=3.1e-08 Score=81.61 Aligned_cols=81 Identities=32% Similarity=0.513 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 002729 351 QGNYADAISCYNEVLRIDPL--AADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKS 428 (887)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 428 (887)
+|++++|+.+++++++..|. +...++.+|.++.+.|++++|+..+++ .+.++.+....+.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 345666678888888888888888777 667777777777778888888888888877
Q ss_pred HHHH
Q 002729 429 YKQA 432 (887)
Q Consensus 429 ~~~a 432 (887)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 258
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.73 E-value=2.7e-07 Score=93.11 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=75.7
Q ss_pred chhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHH
Q 002729 32 RTDNLLLLGAIY-YQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAW 104 (887)
Q Consensus 32 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~ 104 (887)
+....+..+..+ +..|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .++++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345556666655 45677777777777777777776 467777777777777777777777777776665 46677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q 002729 105 SNLASAYMRKGRLNEAAQCCRQALALNPLLVDA 137 (887)
Q Consensus 105 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 137 (887)
+.+|.++...|++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 777777777777777777777777777776543
No 259
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.71 E-value=4.4e-07 Score=100.98 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhccCCCchhHhhHHHHHHHc--------CCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHH
Q 002729 320 LPAAASYYKATLAVTTGLSAPFNNLAVIYKQQ--------GNYADAISCYNEVLRI--DPLAADGLVNRGNTYKEIGRVT 389 (887)
Q Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 389 (887)
..+|+.+|+++++.+|+++.++-.++.++... .+..++.+..++++.+ +|.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555444444322 2345666666676664 6777888999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
+|...+++++.++|+ ..+|..+|.++...|+.++|.+.|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999995 789999999999999999999999999999999884
No 260
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.71 E-value=7.3e-07 Score=99.26 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChH
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRK--------GRLNEAAQCCRQALAL--NPLLVDAHSNLGNLMKAQGLVQ 152 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~ 152 (887)
..+|+.+|+++++.+|++..++..++.++... .+..++.+..++++.. ++.++.++..+|..+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 44555555555555555555555444444322 1233444444454443 4555566666666666667777
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 002729 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPD 204 (887)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (887)
+|...+++++.++| +..+|..+|.++...|+.++|++.|++++.++|.++.
T Consensus 438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 77777777777666 3566666677777777777777777777776666654
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=98.71 E-value=7.4e-07 Score=93.60 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHH---hhCCCchhHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 14 SYKQALEHSNSVY---ERNPLRTDNLLLLGAIYYQL---------HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 14 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
..+.|+.+|.+++ ..+|....++-.++.|++.. .+..+|.+..+++++.+|.++.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3568899999999 88899999999999998765 24578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNL-MKAQGLVQEAYSCYLE 160 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~ 160 (887)
+++.|...|++++.++|+.+.+|+..|....-.|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999876654433333 3445567777777765
Q ss_pred HH
Q 002729 161 AL 162 (887)
Q Consensus 161 al 162 (887)
-.
T Consensus 433 ~~ 434 (458)
T PRK11906 433 ET 434 (458)
T ss_pred cc
Confidence 43
No 262
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.70 E-value=1.5e-08 Score=99.32 Aligned_cols=226 Identities=15% Similarity=0.098 Sum_probs=142.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (887)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (887)
+-..|+.|+++|.|++|+.+|.+.+..+|.++..+.+.+.+|++.+.+..|...+..++.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH---------HHHHHHHHHHcCCHH
Q 002729 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA---------WSNLAGLFMESGDLN 186 (887)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~~~~~~g~~~ 186 (887)
+..+|.+-++.++++.|++.+....++.+.. ..++.- . .+..|....+ .-.-|..+...|.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I-~---~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRERKI-A---TKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH-H---hhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 7777777777777777776655444433322 211111 0 0111111111 112244566667777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc
Q 002729 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC 265 (887)
Q Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 265 (887)
.++..+..-+.....+...-.+ +..+.+..++++++.-..+.....|. ......-+.+---.|...++...++.++..
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 7777776655544333333333 55666677777777777776665554 333333344444456677777778888877
Q ss_pred CCCcH
Q 002729 266 DPRFL 270 (887)
Q Consensus 266 ~p~~~ 270 (887)
.|.+.
T Consensus 331 ~P~~~ 335 (536)
T KOG4648|consen 331 APAVE 335 (536)
T ss_pred ccccc
Confidence 77654
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.70 E-value=0.001 Score=72.02 Aligned_cols=398 Identities=11% Similarity=0.046 Sum_probs=251.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCChHHHHHHHHHH
Q 002729 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYM-RKGRLNEAAQCCRQA 127 (887)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~ 127 (887)
.+.+...|...+...|..-..|...|..-.+.|..+++.++|++.+..-|-....|..+..... ..|+.+.-...|+++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3666677777777788877888888888888888888888888888888877777766554443 346677777777777
Q ss_pred HHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhh
Q 002729 128 LALNPL---LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES------GDLNRALQYYKEAVKL 198 (887)
Q Consensus 128 l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~ 198 (887)
...... ....|-........++++..-..+|++.++..-.....++..-.-+.+. ...+++.+.-......
T Consensus 141 ~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~ 220 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER 220 (577)
T ss_pred HHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh
Confidence 765433 2335555555566777788888888887765333222222211111111 1112222111111100
Q ss_pred --CCCC---HHHH-HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHh--------
Q 002729 199 --KPTF---PDAY-LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG-------- 264 (887)
Q Consensus 199 --~~~~---~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------- 264 (887)
.+.. .+.+ ...-.+-...+..+++...+.+... ..-.++.......+.+..++..++
T Consensus 221 ~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~---------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 221 SKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS---------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred hhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH---------HHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 0000 0000 0000000001111112211111111 111222233334444444554442
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCCchhHhh
Q 002729 265 CDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGLSAPFNN 343 (887)
Q Consensus 265 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 343 (887)
.++.....|..........|+++...-.+++++--.....+.|...+......|+.+-|...+..+.+.. +..+.+...
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 2333456788888888899999999999999998888888999999999999999999998888887775 556666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHhcCCC---cHHHHHHHHHHHH
Q 002729 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ---DYIRAITIRPT---MAEAHANLASAYK 417 (887)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~---~~~~al~~~p~---~~~~~~~la~~~~ 417 (887)
-+..-..+|++..|...++...+..|....+-........+.|+.+.+.. .+....+-..+ ....+...+....
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 77777788999999999999998888888888888888888999988884 33333222111 1334445555444
Q ss_pred h-CCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCC
Q 002729 418 D-SGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 455 (887)
Q Consensus 418 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 455 (887)
+ .++.+.|...+.++.+..|++...+..++......+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 4 6789999999999999999999998888887766553
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=3.9e-07 Score=88.94 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=61.5
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHH
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANA 76 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 76 (887)
|..|..+++.|+|.+|...|...++..|++ +.++++||.+++.+|+|++|...|..+.+..|++ +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 455566666666666666666666666543 4566666666666666666666666666655543 4556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729 77 WKEKGDIDLAIRYYLVAIELRPNFADA 103 (887)
Q Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 103 (887)
...+|+.++|...|+++++..|+...+
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 666666666666666666666654443
No 265
>PRK15331 chaperone protein SicA; Provisional
Probab=98.67 E-value=2.7e-07 Score=83.02 Aligned_cols=104 Identities=12% Similarity=0.003 Sum_probs=88.9
Q ss_pred CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (887)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (887)
++.-+..+..|.-+.+.|++++|..+|+-....+|.+++.+..+|.++..+|++++|+..|..+..++++++...+..|.
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 33445566778888889999999999998888899999999999999999999999999999999998888888999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729 415 AYKDSGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~ 439 (887)
||..+|+.++|+..|+.+++ .|.+
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999998888 3443
No 266
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=4.8e-07 Score=91.28 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=88.4
Q ss_pred hhHhhHHHHH-HHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHH
Q 002729 339 APFNNLAVIY-KQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHAN 411 (887)
Q Consensus 339 ~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 411 (887)
..++..+..+ .+.|++++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|+++++..|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4445555554 56789999999999999999887 579999999999999999999999999988776 4778899
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCChHH
Q 002729 412 LASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (887)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (887)
+|.++...|+.++|++.|+++++..|+...+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999987654
No 267
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.65 E-value=6e-07 Score=95.18 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=73.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (887)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (887)
.+...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+.++++..|.+...+...+..+.+.++++.|+
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 334445666666666666655543 34456666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEA 161 (887)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (887)
++.+++.+..|++...|..|+.+|...|++++|+..++.+
T Consensus 255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 255 EIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666666666666666666666555543
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.64 E-value=0.0006 Score=70.34 Aligned_cols=389 Identities=13% Similarity=0.068 Sum_probs=197.2
Q ss_pred HHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002729 21 HSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (887)
Q Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (887)
-++.-++.+|.+...|+.+..-+..++.+++-.+.++++..-.|-.+.+|......-...+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455567788888888888888888888888888888888888877777777666666777888888888888765433
Q ss_pred HHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 002729 101 ADAWSNLASAYMRKGR---------LNEAAQCCRQALALNPLLVDAHSNLGNLMKA---------QGLVQEAYSCYLEAL 162 (887)
Q Consensus 101 ~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~al 162 (887)
.+.|......-.+.++ .-+|.+..-...-.+|.....|...+..+.. +.+.+.-...|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 5555544433333221 1122222222222345555666666555432 233444455566665
Q ss_pred hhCCChH-HHHHHHHHHHHH-------------cCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCChHH
Q 002729 163 RIQPTFA-IAWSNLAGLFME-------------SGDLNRALQYYKEAVKLK-------PTFPDAYLNLGNVYKALGMPQE 221 (887)
Q Consensus 163 ~~~p~~~-~~~~~la~~~~~-------------~g~~~~A~~~~~~~l~~~-------~~~~~~~~~l~~~~~~~g~~~~ 221 (887)
...-++. ..|...-..-.. .--|-.|...+++...+. |-+...+.
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~n-------------- 254 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTAN-------------- 254 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhc--------------
Confidence 4432221 111111100000 001122222222222110 00000000
Q ss_pred HHHHHHHHHhhCCChhHHhhHHHHHHHc-----CC-h-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002729 222 AIMCYQRAVQTRPNAIAFGNLASTYYER-----GQ-A-DMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYN 294 (887)
Q Consensus 222 A~~~~~~~~~~~p~~~~~~~la~~~~~~-----g~-~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (887)
++... ...-|.+....-... ++ . +.---.+++++...+-.++.|+.....+...++-+.|+...+
T Consensus 255 ------K~~r~--s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~ 326 (660)
T COG5107 255 ------KAART--SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVE 326 (660)
T ss_pred ------ccccc--ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 00000 001122221111111 01 1 112223445555555556666666666666666666666665
Q ss_pred HHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc------------------C------------CCchhHhhH
Q 002729 295 QCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------------------T------------GLSAPFNNL 344 (887)
Q Consensus 295 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------~------------~~~~~~~~l 344 (887)
+.+...|. ....++..|...++-++...+|+++.+.- + ....+|..+
T Consensus 327 rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~ 403 (660)
T COG5107 327 RGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVH 403 (660)
T ss_pred hcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHH
Confidence 55544433 44455555555555444444444433210 0 111223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 002729 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGN-TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (887)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (887)
...-.+..-.+.|.++|-++-+..-...+++..-|. -+...|++..|...|+-.+...|+++...+..-..+...++-+
T Consensus 404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~ 483 (660)
T COG5107 404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE 483 (660)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH
Confidence 333344455666777777766554233333333332 2445677777777777777777777666666666677777777
Q ss_pred HHHHHHHHHHHc
Q 002729 424 AAIKSYKQALLL 435 (887)
Q Consensus 424 ~A~~~~~~al~~ 435 (887)
.|..+|+++++.
T Consensus 484 naraLFetsv~r 495 (660)
T COG5107 484 NARALFETSVER 495 (660)
T ss_pred HHHHHHHHhHHH
Confidence 777777766654
No 269
>PRK15331 chaperone protein SicA; Provisional
Probab=98.61 E-value=6.8e-07 Score=80.49 Aligned_cols=99 Identities=15% Similarity=0.012 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (887)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (887)
+..+..+..|.-++..|++++|...|+-+...+|.++..++.+|.++..+++|++|+..|..+..++++++...+..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 34566777788888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 002729 111 YMRKGRLNEAAQCCRQALA 129 (887)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~ 129 (887)
+...|+.++|+..|+.++.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888888888888888776
No 270
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=9.5e-07 Score=93.70 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=99.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 389 (887)
+...+...++++.|+.++++..+.+|+ ....++.++...++..+|++.++++++.+|.+...+...+..+.+.++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344455566777777777777766654 45567888888888889999999999989999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 002729 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQA 432 (887)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 432 (887)
.|++..+++++..|++...|+.|+.+|.+.|++++|+..++.+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998777654
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.59 E-value=4.6e-08 Score=96.01 Aligned_cols=226 Identities=18% Similarity=0.175 Sum_probs=134.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCC-ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002729 208 NLGNVYKALGMPQEAIMCYQRAVQTRP-NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRV 286 (887)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 286 (887)
..|+-|+++|+|++|+.+|.+.+...| +...+.+.+.+|++.+.+..|..-+..++.++..+..+|...+.+-..+|+.
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 345555555555555555555555555 3555555555555555555666666666655555566666666666666666
Q ss_pred HHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchh---------HhhHHHHHHHcCCHHHH
Q 002729 287 DEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAP---------FNNLAVIYKQQGNYADA 357 (887)
Q Consensus 287 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A 357 (887)
.+|.+.++.++++.|++.+....++.+-. ..++.- +.+..|....+ ...-|..+...|.++.+
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~~I----~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~ 253 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARINS----LRERKI----ATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVP 253 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhhhH----HhhcCCCCCccccchhhhccccCcchhhhhhhccccc
Confidence 66666666666666665544333332211 111110 01111111111 22335666777788888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 002729 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRP 437 (887)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 437 (887)
+.++..-+.....+...-.+ +..+.+.-++++|+....+++..+|........-+.+-.-.|...++...++.++.+.|
T Consensus 254 i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P 332 (536)
T KOG4648|consen 254 VVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAP 332 (536)
T ss_pred eeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecc
Confidence 88777666554444443333 67778888889999888888888776555555555555566777888888888888888
Q ss_pred CChHH
Q 002729 438 DFPEA 442 (887)
Q Consensus 438 ~~~~~ 442 (887)
.+...
T Consensus 333 ~~~~~ 337 (536)
T KOG4648|consen 333 AVETP 337 (536)
T ss_pred ccccc
Confidence 76443
No 272
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.58 E-value=2.6e-07 Score=100.81 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=89.8
Q ss_pred CCcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729 711 EDKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (887)
Q Consensus 711 ~~~~~~~~~~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 789 (887)
.+.+++|.++++. |...+ +..++.+..|+..|+|+|.++... ... ...+ .++|.|+|.+++++...+++.
T Consensus 203 ~~~~~i~y~G~l~~~~d~~---ll~~la~~~p~~~~vliG~~~~~~-~~~---~~~~--~~nV~~~G~~~~~~l~~~l~~ 273 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDLE---LLEALAKARPDWSFVLIGPVDVSI-DPS---ALLR--LPNVHYLGPKPYKELPAYLAG 273 (373)
T ss_pred CCCCEEEEEeccccccCHH---HHHHHHHHCCCCEEEEECCCcCcc-Chh---Hhcc--CCCEEEeCCCCHHHHHHHHHh
Confidence 3456777777765 44444 445666788999999999762211 111 1111 478999999999999999999
Q ss_pred CcEEecCCCCC------CchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHH-hcC
Q 002729 790 ADLFLDTPLCN------AHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSL-ALD 859 (887)
Q Consensus 790 ~d~~ld~~~~~------g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l-~~d 859 (887)
+||++-|+-.+ .++.++|+|+||+|||+...+... ...+ ...++..|.+++++...+. ..+
T Consensus 274 ~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~--------~~~~-~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 274 FDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVR--------RYED-EVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred CCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHH--------hhcC-cEEEeCCCHHHHHHHHHHHHhcC
Confidence 99999887533 156689999999999976543222 2222 2214457899999999984 444
No 273
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00084 Score=75.85 Aligned_cols=330 Identities=13% Similarity=0.098 Sum_probs=141.3
Q ss_pred HHHHHHHhhC---CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 20 EHSNSVYERN---PLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEP---RFAECYGNMANAWKEKGDIDLAIRYYLVA 93 (887)
Q Consensus 20 ~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (887)
.+.++++... ..+++....-..++...+-..+-++++++.+-.+. .+......+.....+ -+.....++.++.
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 3455554422 23455555555666677777777777777653322 122222222222222 1223333333333
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------------CCCCHHHHHHHHHHHHHcCCh
Q 002729 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL----------------------NPLLVDAHSNLGNLMKAQGLV 151 (887)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~ 151 (887)
-..+.. .++.+....+-+++|...|++--.. .-+.+..|..+|....+.|..
T Consensus 1047 dnyDa~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1047 DNYDAP------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred ccCCch------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence 222211 1334444444555555555442100 002334444455555555555
Q ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729 152 QEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQ 231 (887)
Q Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (887)
.+|++.|-++ +++..+........+.|+|++-+.++..+.+... .+.+-..+..+|.+.++..+-.+..
T Consensus 1121 ~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi----- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFI----- 1189 (1666)
T ss_pred HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHh-----
Confidence 5554444332 3334444444444444555544444444333221 1223333334444444433322221
Q ss_pred hCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHH
Q 002729 232 TRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (887)
Q Consensus 232 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (887)
..|+..-....|.-++..+.|+.|.-+|... .-|..++..+..+|+|+.|...-+++ ++..+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence 1233333344444444555555444444322 23444555555555555555544443 2233444444
Q ss_pred HHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002729 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (887)
Q Consensus 312 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (887)
.++...+.+.-|.-+=-.. --.++-+-.+...|...|-+++-+.+++.++-+....-..+..+|..|.+
T Consensus 1257 faCvd~~EFrlAQiCGL~i----ivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLAQICGLNI----IVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHHHhcCceE----EEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 4444433333222110000 00112233455556666666666666666665554444445555555443
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.56 E-value=1.9e-05 Score=76.46 Aligned_cols=170 Identities=19% Similarity=0.158 Sum_probs=98.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---AWSN 106 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 106 (887)
+..|+.-|...++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+...++-+...|.++. +++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 4455555555555555555555555555555443 345555555555555555555555555555554322 3444
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 107 LASAYMRK--------GRLNEAAQCCRQALALNPLLV-----------------DAHSNLGNLMKAQGLVQEAYSCYLEA 161 (887)
Q Consensus 107 la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~a 161 (887)
.|.+++.. .-..+|...|+..++..|++. .--...|..|.+.|.+..|+.-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44443322 112344555555555555421 12245777888888888888888888
Q ss_pred HhhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002729 162 LRIQPTF---AIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF 202 (887)
Q Consensus 162 l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (887)
++..|+. .+++..+..+|...|-.++|...-.-+-...|++
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 8775543 4566777778888888888776655544444544
No 275
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=7.6e-05 Score=77.47 Aligned_cols=427 Identities=15% Similarity=0.078 Sum_probs=237.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCC----Cc-hhHHHHHHHHHHhcCCHHHHHHHHH---HHHhc---CC------
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNP----LR-TDNLLLLGAIYYQLHDYDMCIARNE---EALRL---EP------ 64 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~-~~~~~~la~~~~~~g~~~~A~~~~~---~al~~---~p------ 64 (887)
++..|..++....+.+|++...+....-. .. ...-+..-..+....+-++|+.++. +++.. .+
T Consensus 103 ~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~ 182 (696)
T KOG2471|consen 103 DYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIP 182 (696)
T ss_pred hhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Confidence 45667777777788888877776654321 11 1111222233444445555554433 22211 00
Q ss_pred ----------C-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 002729 65 ----------R-----------FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQC 123 (887)
Q Consensus 65 ----------~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 123 (887)
. ...+.......+.+..+...+..-.+.+.....+.+.+....++.++..|++.+|.+.
T Consensus 183 ~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~Kl 262 (696)
T KOG2471|consen 183 ANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKL 262 (696)
T ss_pred hhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHH
Confidence 0 0123344445566667777777777777777777788888888888889999988887
Q ss_pred HHHHH-HhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------CCChHHHHHHHH
Q 002729 124 CRQAL-ALNPL--------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRI------------------QPTFAIAWSNLA 176 (887)
Q Consensus 124 ~~~~l-~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la 176 (887)
+...- ...+. .--.++++|.++++.|.+.-+..+|.++++. ........++.|
T Consensus 263 L~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG 342 (696)
T KOG2471|consen 263 LLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCG 342 (696)
T ss_pred HHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhh
Confidence 75541 11222 1224678888888899998888888888851 123356778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHH--H--------------HhhC----
Q 002729 177 GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGM---PQEAIMCYQR--A--------------VQTR---- 233 (887)
Q Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~--~--------------~~~~---- 233 (887)
..|...|+.-.|.++|.++......+|..|..++.+.....+ .++......+ + ++.+
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~ 422 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVE 422 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceec
Confidence 889999999999999999988888888899888887654321 1111111111 0 0000
Q ss_pred -CC----hhHHhhHHHHHHHcC-----ChHHHHHHHHHHH---------h-------------------cCC-CcH----
Q 002729 234 -PN----AIAFGNLASTYYERG-----QADMAILYYKQAI---------G-------------------CDP-RFL---- 270 (887)
Q Consensus 234 -p~----~~~~~~la~~~~~~g-----~~~~A~~~~~~~l---------~-------------------~~p-~~~---- 270 (887)
+. +..-..++.++.+.+ .-..--..+.-+. + ..| ..+
T Consensus 423 ~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e 502 (696)
T KOG2471|consen 423 LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFE 502 (696)
T ss_pred cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHH
Confidence 00 111111222222111 0000000000000 0 001 111
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHH-----HcCChhHHHHHHHHHHhccCCCc
Q 002729 271 -------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYM-----EWNMLPAAASYYKATLAVTTGLS 338 (887)
Q Consensus 271 -------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~ 338 (887)
.++...+.+-..+|+.-.|+..-.+.++. |+-..++..+|.+|. ...+..+|...+.--.--+.+..
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~ 581 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFK 581 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccc
Confidence 13445566677888888888888888764 455666666666654 34455555544433111110100
Q ss_pred hhHhhHHHHHHHcCCHHHHHHHHHHH----HhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHH
Q 002729 339 APFNNLAVIYKQQGNYADAISCYNEV----LRIDPLA-----ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRP--TMAE 407 (887)
Q Consensus 339 ~~~~~la~~~~~~g~~~~A~~~~~~a----l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 407 (887)
..++. ...+.+.+--+.++-. .+..|.. ...++++|.++.-+|++++|..++..+..+-+ .+++
T Consensus 582 ~~~n~-----~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~ 656 (696)
T KOG2471|consen 582 LPYNQ-----EDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQ 656 (696)
T ss_pred cccch-----hhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHH
Confidence 00000 0001100000000000 0001111 23678999999999999999999999988876 4455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729 408 AHANLASAYKDSGHVEAAIKSYKQALL 434 (887)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (887)
+......+-.++|+...|...+++.--
T Consensus 657 A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 657 ATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 665556666778999999988887543
No 276
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=9.1e-07 Score=80.54 Aligned_cols=107 Identities=27% Similarity=0.324 Sum_probs=93.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAA-----DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYK 417 (887)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (887)
.-|.-++..|+|++|..-|..+++..|..+ -.|.+.|.++.+++.++.|++...++++++|.+..++...+.+|.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 446777888999999999999999887654 377888999999999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 002729 418 DSGHVEAAIKSYKQALLLRPDFPEATCNLLHT 449 (887)
Q Consensus 418 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 449 (887)
++.++++|++.|+++++.+|....+.-.++..
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999987776655543
No 277
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.0011 Score=75.08 Aligned_cols=285 Identities=14% Similarity=0.136 Sum_probs=149.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (887)
.|......+-|++|..+|++.- . +..+...+. -..++.+.|.++.++. +.+..|..+|.+..+.|...
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~-~---n~~A~~VLi---e~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD-M---NVSAIQVLI---ENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhc-c---cHHHHHHHH---HHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 5667777888888888887641 1 222222211 2334555555555443 34566666666666666666
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------
Q 002729 85 LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGL-------------- 150 (887)
Q Consensus 85 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-------------- 150 (887)
+|++.|-++ +++..|........+.|.|++-.+++.-+.+... .+..-..+...|.+.++
T Consensus 1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~AyAkt~rl~elE~fi~gpN~A 1195 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFAYAKTNRLTELEEFIAGPNVA 1195 (1666)
T ss_pred HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHHHHHhchHHHHHHHhcCCCch
Confidence 666666543 3455566666666666666666666655543321 11222233334444444
Q ss_pred --------------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002729 151 --------------VQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (887)
Q Consensus 151 --------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 216 (887)
|+.|.-+|.. ..-|..++..+...|+|..|....+++ ++..+|.....+....
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDK 1262 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhch
Confidence 4444333322 122444455555555555555544443 2233333333333332
Q ss_pred CChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 217 GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (887)
+.+.-|.-+= +.+--...-+-.+...|...|-+++-+.+++..+++.......+..++.+|.+- ++++-.+.++-.
T Consensus 1263 ~EFrlAQiCG---L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1263 EEFRLAQICG---LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred hhhhHHHhcC---ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 2222221100 000001344556677788888888888888888887777776777777776654 455555555433
Q ss_pred HhcC--------CCChHHHHhHHHHHHHcCChhHHH
Q 002729 297 LSLQ--------PSHPQALTNLGNIYMEWNMLPAAA 324 (887)
Q Consensus 297 l~~~--------p~~~~~~~~l~~~~~~~g~~~~A~ 324 (887)
...- -+....|..+..+|.+-..|+.|.
T Consensus 1339 wsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1339 WSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3210 122345666777777666666654
No 278
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.52 E-value=3.1e-07 Score=72.20 Aligned_cols=66 Identities=29% Similarity=0.409 Sum_probs=45.2
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 10 YKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMAN 75 (887)
Q Consensus 10 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 75 (887)
++.|+|++|++.|++++..+|++..+++.++.++.+.|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 556777777777777777777777777777777777777777777777777777776665555543
No 279
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.51 E-value=2.4e-06 Score=75.34 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=53.9
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCC---chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPL---RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMAN 75 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 75 (887)
++..|...++.|+|++|++.|+.+....|. ...+.+.++.+|++.+++++|+..+++.++++|.+ ..+++..|.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 355667777777777777777777666653 35566777777777777777777777777777665 345666666
Q ss_pred HHHHcCC
Q 002729 76 AWKEKGD 82 (887)
Q Consensus 76 ~~~~~g~ 82 (887)
+++.+..
T Consensus 93 ~~~~~~~ 99 (142)
T PF13512_consen 93 SYYEQDE 99 (142)
T ss_pred HHHHHhh
Confidence 6665544
No 280
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.50 E-value=1.9e-06 Score=84.17 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=92.4
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM---AEAHANLAS 414 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 414 (887)
.+..+.-+++.|+|.+|...|...++..|++ ++++++||.+++.+|++++|...|..+.+..|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5667777888899999999999999998876 5799999999999999999999999999987665 788999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCChHHHH
Q 002729 415 AYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (887)
Q Consensus 415 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (887)
+...+|+.++|...|+++.+..|+.+.+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999876653
No 281
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.49 E-value=0.00031 Score=76.30 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 002729 406 AEAHANLASAYKDSGHVEAAIKSYKQALLLR 436 (887)
Q Consensus 406 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 436 (887)
++++..++..+...|++++|-+.|-++++++
T Consensus 995 ~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred ccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 3455555666666666666666666655554
No 282
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.49 E-value=1.3e-06 Score=93.27 Aligned_cols=169 Identities=13% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCCCCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcC-----CceEEEecCC------hh---hHHHHHHHHHH
Q 002729 701 QPKRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVP-----NSALWLLRFP------AA---GEMRLRAYAVA 764 (887)
Q Consensus 701 ~~~r~~~~l~~~~~~~~~~~~~~--k~~~~~~~~~~~il~~~p-----~~~l~~~~~~------~~---~~~~l~~~~~~ 764 (887)
.+.|...|+....+.|.++|+.. |...-.+..+.+.....| .-++.+.|.. .. ....|++...+
T Consensus 261 ~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~ 340 (495)
T KOG0853|consen 261 LPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEE 340 (495)
T ss_pred cccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHH
Confidence 45677778888789999999964 777778888877776664 4466666622 11 12467888999
Q ss_pred cCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeee-cccchhhhhHHHHHHhcCCCCccc
Q 002729 765 QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITL-PLEKMATRVAGSLCLATGLGEEMI 842 (887)
Q Consensus 765 ~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~~~g~~~~~~ 842 (887)
.++..+.|.|+...+..+-..++..+...+-+...+. |.|++|||++|+|||.. .|.+....+. |.++.++
T Consensus 341 ~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~ 413 (495)
T KOG0853|consen 341 YDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLI 413 (495)
T ss_pred hCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceee
Confidence 9998889999998888777888899999999977777 99999999999999865 4544443333 6777355
Q ss_pred cCCHH---HHHHHHHHHhcCHHHHHHHHHHHHhhccc
Q 002729 843 VNSMK---EYEERAVSLALDRQKLQALTNKLKSVRLT 876 (887)
Q Consensus 843 ~~~~~---~y~~~a~~l~~d~~~~~~~~~~~~~~~~~ 876 (887)
..+.+ .+....+++.+|++.+.+++++-+++...
T Consensus 414 dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e 450 (495)
T KOG0853|consen 414 DPGQEAVAELADALLKLRRDPELWARMGKNGLKRVKE 450 (495)
T ss_pred CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 56555 49999999999999999999998887654
No 283
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.00011 Score=70.35 Aligned_cols=185 Identities=21% Similarity=0.329 Sum_probs=123.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 208 NLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVD 287 (887)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 287 (887)
..+.+....|+..+.+.-+......- ..+..........+..++.+++-++ .+.+.+..++...|.|.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~ 194 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVV------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYV 194 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhh
Confidence 34555566677777666655544321 1122222333333556666666543 35677788888888888
Q ss_pred HHHHHHHHHHhcC-CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc------CCCchhHhhHHHHHHHcCCHHHHHHH
Q 002729 288 EAIQCYNQCLSLQ-PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT------TGLSAPFNNLAVIYKQQGNYADAISC 360 (887)
Q Consensus 288 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~ 360 (887)
-....+++.++.+ |.++.....+|.+.++.|+.+.|..+|+...+.. ..+.....+.+.++.-.+++.+|...
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 8888998888887 5677788888888888888888888888554332 12233445566666667777777777
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
+.+++..+|.++.+.++.+.|+.-.|+..+|++.++.+++..|.
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 77777777777777777777777777777777777777777665
No 284
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.48 E-value=0.0061 Score=70.86 Aligned_cols=179 Identities=17% Similarity=0.077 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhhCC----CchhHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHH
Q 002729 16 KQALEHSNSVYERNP----LRTDNLLLLGAIYY-QLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDID 84 (887)
Q Consensus 16 ~~A~~~~~~~l~~~p----~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 84 (887)
..|+++++-+++..+ ....+.+.+|.+++ ...++++|..++++++.+..++ ..+.+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445666776664322 23456777887776 6778888888888887665332 234556677777777766
Q ss_pred HHHHHHHHHHhcCCC---cHH-HHHHH--HHHHHHcCChHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCChH
Q 002729 85 LAIRYYLVAIELRPN---FAD-AWSNL--ASAYMRKGRLNEAAQCCRQALALN--PLLVDA----HSNLGNLMKAQGLVQ 152 (887)
Q Consensus 85 ~A~~~~~~al~~~p~---~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----~~~la~~~~~~g~~~ 152 (887)
|...+++.++...+ ... ..+.+ +..+...+++..|.+.++...... ..++.+ ....+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887775433 111 11112 222223368888888888877654 344332 223345555667677
Q ss_pred HHHHHHHHHHhhC----------CChHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 002729 153 EAYSCYLEALRIQ----------PTFAIAWSNLAGL--FMESGDLNRALQYYKEA 195 (887)
Q Consensus 153 ~A~~~~~~al~~~----------p~~~~~~~~la~~--~~~~g~~~~A~~~~~~~ 195 (887)
++++..+++.... +....+|..+..+ +...|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777776664321 1223444444433 34556655655544443
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.46 E-value=0.0031 Score=65.65 Aligned_cols=431 Identities=14% Similarity=0.040 Sum_probs=240.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCch-----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRT-----DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW 77 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 77 (887)
...|-.+-+++++.+|.++|.++.+...+++ +.+..+....+-+++.+.-...+...-+..|+.+......|...
T Consensus 10 c~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 10 CFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVA 89 (549)
T ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 4567788899999999999999987655442 34444555556677888777777777778888888888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C----CCHHH
Q 002729 78 KEKGDIDLAIRYYLVAIELRPN---------------FADAWSNLASAYMRKGRLNEAAQCCRQALALN-P----LLVDA 137 (887)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p----~~~~~ 137 (887)
++.+++.+|++.+....+.-.. +...-...+.++...|++.++...+++++..- + -+.+.
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 9999999999988766554111 11122346788899999999999999987652 2 24444
Q ss_pred HHH----HHHHHHH----cCChHHHHHHHHHHH-------hh--------CCChHHHHHHHHHHHH----HcCCHHHHHH
Q 002729 138 HSN----LGNLMKA----QGLVQEAYSCYLEAL-------RI--------QPTFAIAWSNLAGLFM----ESGDLNRALQ 190 (887)
Q Consensus 138 ~~~----la~~~~~----~g~~~~A~~~~~~al-------~~--------~p~~~~~~~~la~~~~----~~g~~~~A~~ 190 (887)
+.. +|..|.- ....+-+..+|+.++ .. .|.+.-.-..+-.++. +.--+-++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 444 3333321 111111122221111 11 1111000000000000 0000111111
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-----CC-hhHHhhHHHHHHHcCChHHHHHHHHHHHh
Q 002729 191 YYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR-----PN-AIAFGNLASTYYERGQADMAILYYKQAIG 264 (887)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 264 (887)
.+++- -.+|+..-+...+..-... +.+++....+.+.... .. ...+..+-....+.++..+|.+++.-...
T Consensus 250 ~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11110 1133332222222222222 4444444444333221 11 34445555566777888888888887777
Q ss_pred cCCCcHHHHHH------HHHHHH-HcCCH---HHHHHHHHHHHhcCCCCh---HHHHhHHHHHHHcCC-hhHHHHHHHHH
Q 002729 265 CDPRFLEAYNN------LGNALK-DVGRV---DEAIQCYNQCLSLQPSHP---QALTNLGNIYMEWNM-LPAAASYYKAT 330 (887)
Q Consensus 265 ~~p~~~~~~~~------la~~~~-~~g~~---~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~-~~~A~~~~~~~ 330 (887)
.+|+.....-. +-.+.+ ....+ ..=+..++.+-..+-+.. .-+..-+.-+.+.|. -++|+.+++.+
T Consensus 327 ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~i 406 (549)
T PF07079_consen 327 LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLI 406 (549)
T ss_pred cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 88876521111 111111 11111 122223333322333322 233445666777777 88899999999
Q ss_pred HhccCCCchhHhhHHHHHHHcCCHHHHHH--HHHHHHh---------cCC---CCHHHHHHH--HHHHHHcCCHHHHHHH
Q 002729 331 LAVTTGLSAPFNNLAVIYKQQGNYADAIS--CYNEVLR---------IDP---LAADGLVNR--GNTYKEIGRVTDAIQD 394 (887)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~---------~~p---~~~~~~~~l--~~~~~~~g~~~~A~~~ 394 (887)
++..+.+...-+..-.. . ...|.+|+. .+.+.++ +.| .+.+.-+.+ |..++..|+|.++.-+
T Consensus 407 l~ft~yD~ec~n~v~~f-v-Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~y 484 (549)
T PF07079_consen 407 LQFTNYDIECENIVFLF-V-KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLY 484 (549)
T ss_pred HHhccccHHHHHHHHHH-H-HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 98888776543322111 1 112333322 1222222 122 223333333 5567788999999988
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (887)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (887)
-.=..+..| ++.++..+|.++...++|++|..++... |.+.+.+
T Consensus 485 s~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~ 528 (549)
T PF07079_consen 485 SSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMR 528 (549)
T ss_pred HHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhH
Confidence 888889999 7999999999999999999999998764 4454443
No 286
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.44 E-value=5.8e-05 Score=73.22 Aligned_cols=176 Identities=22% Similarity=0.205 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q 002729 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD---AHS 139 (887)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 139 (887)
.+..++.-|....+.|++++|+..|+.+....|. ...+...++.++++.+++++|+..+++.+.+.|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 4677888889999999999999999999888766 3567888899999999999999999999998877654 455
Q ss_pred HHHHHHHHcC--------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002729 140 NLGNLMKAQG--------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGN 211 (887)
Q Consensus 140 ~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 211 (887)
..|.++...= -..+|...|+..+...|++.-+-..... +..+... ...--..+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~Iar 175 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMAIAR 175 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHHHHH
Confidence 5555543321 1234445555555555554322111000 0000000 0112234455
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC----hhHHhhHHHHHHHcCChHHHHHH
Q 002729 212 VYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILY 258 (887)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~ 258 (887)
.|.+.|.+..|+.-++.+++..|+ .+++..+..+|...|-.++|...
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 556666666666666665555444 34445555555555555555443
No 287
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=3.1e-06 Score=77.16 Aligned_cols=113 Identities=27% Similarity=0.314 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-----AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (887)
...+-.-|.-++..|+|++|..-|..++...|.. ...|.+.|.+..+++.++.|+....++++++|.+..++...
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence 3444556777777888888888888888777753 34667777778888888888888888888888777777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002729 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (887)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (887)
+.+|.+...+++|++-|+++++.+|....+.-..+.+-
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 88888888888888888888888877766655555443
No 288
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=8.3e-07 Score=69.76 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=32.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANL 412 (887)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (887)
+.|++++|++.|+++++.+|++..+++.++.++.+.|++++|...+++++..+|+++.++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555544444433
No 289
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.41 E-value=6.9e-06 Score=71.46 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=64.8
Q ss_pred hHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 002729 340 PFNNLAVIYKQQGNYADAISCYNEVLRIDPLA---ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT---MAEAHANLA 413 (887)
Q Consensus 340 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 413 (887)
+++.++.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++.+...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45566667777777777777777777654333 346677777777777777777777777776666 556666677
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 002729 414 SAYKDSGHVEAAIKSYKQALL 434 (887)
Q Consensus 414 ~~~~~~g~~~~A~~~~~~al~ 434 (887)
.++...|+.++|++.+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777766554
No 290
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.41 E-value=4.1e-05 Score=69.22 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=72.2
Q ss_pred HHhHHHHHHHcCChhHHHHHHHHHHh-ccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q 002729 307 LTNLGNIYMEWNMLPAAASYYKATLA-VTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDP--LAADGLVNRGNTYK 383 (887)
Q Consensus 307 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~ 383 (887)
.+.++..+.+.|++.+|...|++++. ..-.++.....++...+..+++.+|...+++..+.+| ..++....+|..+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 34455555555555555555555443 2344455555566666666666666666666666655 23556666666666
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002729 384 EIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQ 431 (887)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (887)
..|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+..
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 666666666666666666665 45555566666666666555544433
No 291
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.40 E-value=8.8e-06 Score=70.79 Aligned_cols=91 Identities=23% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHH
Q 002729 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLAS 109 (887)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~ 109 (887)
++.+|.++-..|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+...|+ +..+...++.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3344444444444444444444444432221 233444444444444444444444444443333 3333333444
Q ss_pred HHHHcCChHHHHHHHHH
Q 002729 110 AYMRKGRLNEAAQCCRQ 126 (887)
Q Consensus 110 ~~~~~g~~~~A~~~~~~ 126 (887)
++...|+.++|+..+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 44444444444444433
No 292
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.40 E-value=4.5e-05 Score=68.98 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729 219 PQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCL 297 (887)
Q Consensus 219 ~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (887)
++....-..+.++..|.....+.++..+.+.|++.+|...|++++ +..-.+......+++..+..+++..|...+++..
T Consensus 72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 72 PERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 333333344444444555555555555555555555555555555 3444445555555555555555555555555555
Q ss_pred hcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002729 298 SLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN 377 (887)
Q Consensus 298 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 377 (887)
+.+|.. ..+.....++..+..+|++.+|...|+.++...|. +.+...
T Consensus 152 e~~pa~--------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~ 198 (251)
T COG4700 152 EYNPAF--------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIY 198 (251)
T ss_pred hcCCcc--------------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHH
Confidence 554431 12333444455555555555555555555555443 344445
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 002729 378 RGNTYKEIGRVTDAIQDYIRA 398 (887)
Q Consensus 378 l~~~~~~~g~~~~A~~~~~~a 398 (887)
.+..+.++|+..+|..-+...
T Consensus 199 Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 199 YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHhcchhHHHHHHHHH
Confidence 555666666555555444433
No 293
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.39 E-value=4.1e-06 Score=70.64 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhC
Q 002729 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDS 419 (887)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 419 (887)
-|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++.+++++++..+. -.++...|.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35566677777778888887777777777778888888777788888888888877775432 34677788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhh
Q 002729 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQC 452 (887)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 452 (887)
|+-+.|...|+.+-+++.....-....++-|..
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAA 161 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAA 161 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHH
Confidence 888888888888888876655444444444443
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.37 E-value=0.0056 Score=64.64 Aligned_cols=426 Identities=13% Similarity=0.077 Sum_probs=214.1
Q ss_pred HHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc
Q 002729 18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD-IDLAIRYYLVAIEL 96 (887)
Q Consensus 18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 96 (887)
-..+|+.+..+.+.+...|........+.+.+.+-..+|.+++..+|+++..|..-|.-.+.-+. .+.|...|.+.+..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34566677777777777777776666666667777777777777777777777777766666554 77777777777777
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------C---Ch--------HHH--
Q 002729 97 RPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ---------G---LV--------QEA-- 154 (887)
Q Consensus 97 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g---~~--------~~A-- 154 (887)
+|+++..|...-..-..- -+=...-++.+..+..+.+.-...+...... + .. +..
T Consensus 170 npdsp~Lw~eyfrmEL~~---~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~ke 246 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRMELMY---AEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKE 246 (568)
T ss_pred CCCChHHHHHHHHHHHHH---HHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHH
Confidence 777777665443332110 0000000111111111110000000000000 0 00 000
Q ss_pred --HHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729 155 --YSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (887)
Q Consensus 155 --~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (887)
....+......|.++..|..++.-.. +-..+..-. -..+......---+-+-...+|+.+++.
T Consensus 247 l~k~i~d~~~~~~~~np~~~~~laqr~l------------~i~~~tdl~---~~~~~~~~~~~~~k~s~~~~v~ee~v~~ 311 (568)
T KOG2396|consen 247 LQKNIIDDLQSKAPDNPLLWDDLAQREL------------EILSQTDLQ---HTDNQAKAVEVGSKESRCCAVYEEAVKT 311 (568)
T ss_pred HHHHHHHHHhccCCCCCccHHHHHHHHH------------HHHHHhhcc---chhhhhhchhcchhHHHHHHHHHHHHHH
Confidence 00001111123334433333332111 100000000 0000000111111122334666666665
Q ss_pred CCChhHHhhHHHHHHHc-----C-ChHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Q 002729 233 RPNAIAFGNLASTYYER-----G-QADMAILYYKQAIG---CDPRFLEAYNNLGNALKDVGRVDEAI-QCYNQCLSLQPS 302 (887)
Q Consensus 233 ~p~~~~~~~la~~~~~~-----g-~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~ 302 (887)
-+....|......+... | ....-..+++++.+ ..+....-|..+..++.....-.++. ..... ...+
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e---~f~~ 388 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE---LFRD 388 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH---Hhcc
Confidence 55543333322222211 1 23334444555543 34555666666666666655433322 22222 2345
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHH---HHhccCCC--chhHhhHHHHHHHcCC-HHHHHH--HHHHHHhc-CCCCHH
Q 002729 303 HPQALTNLGNIYMEWNMLPAAASYYKA---TLAVTTGL--SAPFNNLAVIYKQQGN-YADAIS--CYNEVLRI-DPLAAD 373 (887)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~--~~~~~~la~~~~~~g~-~~~A~~--~~~~al~~-~p~~~~ 373 (887)
+...|............ .+.-.|.. .++..+.+ ...|..-. .++ ...... .+...... .++...
T Consensus 389 s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred hHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceee
Confidence 55555544444432211 11111111 11111111 11121111 222 222221 11112221 345555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhh
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS--GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQ 451 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 451 (887)
.-..+-..+.+.|-+.+|.+.|.+...+.|-....+..+...-..+ -+...++++|+.++.....+++.|.+.+..-.
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEEL 541 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhc
Confidence 5666777888899999999999999999998888777777654442 24888999999999988899999999999888
Q ss_pred hcCChhhHhHHHHHHHHHHH
Q 002729 452 CVCSWEDRDRMFSEVEGIIR 471 (887)
Q Consensus 452 ~~g~~~~a~~~~~~~~~~~~ 471 (887)
..|..+.+..++.++.+.++
T Consensus 542 ~~g~~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAMKTLQ 561 (568)
T ss_pred cCCCcccccHHHHHHHHhhC
Confidence 99999999988888877543
No 295
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.36 E-value=1.7e-06 Score=101.74 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=106.5
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCce--E--EEecCCh----hhHHHHHHHHHHcC--CCC--C-----cE
Q 002729 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA--L--WLLRFPA----AGEMRLRAYAVAQG--VQP--D-----QI 772 (887)
Q Consensus 712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~--l--~~~~~~~----~~~~~l~~~~~~~g--~~~--~-----r~ 772 (887)
+..++++..|+ .|..+..+++|.++++..|+.+ + ++++.+. ...+.+++.+.+.+ |.. . -|
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv 357 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI 357 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence 45677788876 5999999999999999999863 3 3333221 11346777776664 321 1 13
Q ss_pred EEc-CCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCc----eeeecccchhhhhHHHHHHhcCCCCcccc--C
Q 002729 773 IFT-DVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLP----MITLPLEKMATRVAGSLCLATGLGEEMIV--N 844 (887)
Q Consensus 773 ~~~-~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~g~~~~~~~--~ 844 (887)
++. +.++.++..++|+.+||||-|+-+.| |++.+|||+||+| +|.-.-...+. . +|-.. +++ .
T Consensus 358 ~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~-----~---l~~~a-llVnP~ 428 (797)
T PLN03063 358 HHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ-----S---LGAGA-LLVNPW 428 (797)
T ss_pred EEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh-----h---hcCCe-EEECCC
Confidence 333 36788999999999999999998989 9999999999998 55321111111 1 23334 443 7
Q ss_pred CHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 002729 845 SMKEYEERAVSLAL-DRQKLQALTNKLKSVR 874 (887)
Q Consensus 845 ~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~ 874 (887)
|.++..+...++.+ +++.+++..+++++..
T Consensus 429 D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v 459 (797)
T PLN03063 429 NITEVSSAIKEALNMSDEERETRHRHNFQYV 459 (797)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 88998888888888 7777777777676654
No 296
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.35 E-value=2.3e-06 Score=68.29 Aligned_cols=62 Identities=29% Similarity=0.537 Sum_probs=30.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (887)
+|.+.+++++|+++++++++.+|+++..+..+|.++...|++++|++.++++++..|+++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 44444555555555555555555555555555555555555555555555555444444433
No 297
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.33 E-value=1.3e-05 Score=70.72 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFAD---AWS 105 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 105 (887)
.+..++..|...++.|+|++|++.|+.+....|.. ..+...++.+|++.+++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46778888888899999999999999888887753 578888888999999999999999998888887643 667
Q ss_pred HHHHHHHHcCC
Q 002729 106 NLASAYMRKGR 116 (887)
Q Consensus 106 ~la~~~~~~g~ 116 (887)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77777666544
No 298
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=3.1e-06 Score=67.61 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=40.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGN 72 (887)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 72 (887)
...++++++|++|++.+++++..+|.++..+..+|.++...|++++|++.++++++..|++..+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666666666655544433
No 299
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.31 E-value=0.00013 Score=77.36 Aligned_cols=108 Identities=26% Similarity=0.372 Sum_probs=95.5
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCC
Q 002729 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAA-DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGH 421 (887)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 421 (887)
..|......|+...|++++..++...|... ..+.+++.++.+.|...+|-..+.+++.+....+-.++.+|.+|..+.+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 334555678999999999999999988654 4788999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHh
Q 002729 422 VEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (887)
Q Consensus 422 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (887)
.+.|++.|+++++++|+++..-..|....
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 99999999999999999998887765543
No 300
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.30 E-value=7.9e-06 Score=91.28 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=116.7
Q ss_pred cEEEEecCC-CCCCCHHHHHHHHHHHhhcCCceEEEecCChh--hHHHHHHHHHHcCCC---------------------
Q 002729 713 KFIFACFNQ-LYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--GEMRLRAYAVAQGVQ--------------------- 768 (887)
Q Consensus 713 ~~~~~~~~~-~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~l~~~~~~~g~~--------------------- 768 (887)
.+++...-| +.|-.+..++++.+++..+|++.|.+.|.+.. ....+++...+.+..
T Consensus 321 ~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (519)
T TIGR03713 321 TEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQ 400 (519)
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhccc
Confidence 355555334 57999999999999999999999999886642 235666665555543
Q ss_pred -------CCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcc
Q 002729 769 -------PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEM 841 (887)
Q Consensus 769 -------~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~ 841 (887)
.++|.|.|.....+....|..+.+++|+....|-.|.+||+..|||+|-.....+.. =|.++ +
T Consensus 401 ~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqInyg~~~~V~---------d~~NG-~ 470 (519)
T TIGR03713 401 TDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETDYVE---------HNKNG-Y 470 (519)
T ss_pred chhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeecCCceeeE---------cCCCc-E
Confidence 179999998887788999999999999998888449999999999999322222221 17888 8
Q ss_pred ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729 842 IVNSMKEYEERAVSLALDRQKLQALTNKLKS 872 (887)
Q Consensus 842 ~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~ 872 (887)
+..+.++..+.++.+..|++..+++....-+
T Consensus 471 li~d~~~l~~al~~~L~~~~~wn~~~~~sy~ 501 (519)
T TIGR03713 471 IIDDISELLKALDYYLDNLKNWNYSLAYSIK 501 (519)
T ss_pred EeCCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 8899999999999999999888887765443
No 301
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.29 E-value=2.6e-06 Score=100.69 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=104.3
Q ss_pred CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCC----ceEEEecCCh----hhHHHHHHHHHHc--------CC-CCC-
Q 002729 711 EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPN----SALWLLRFPA----AGEMRLRAYAVAQ--------GV-QPD- 770 (887)
Q Consensus 711 ~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~----~~l~~~~~~~----~~~~~l~~~~~~~--------g~-~~~- 770 (887)
.+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. ...+.+++.+.+. |. +-.
T Consensus 263 ~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~p 342 (726)
T PRK14501 263 RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTP 342 (726)
T ss_pred CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcce
Confidence 355788888887 49999999999999999996 5788876331 1123455544433 22 111
Q ss_pred cEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHh-----CCceeeecccchhhhhHHHHHHhcCCCCcccc-
Q 002729 771 QIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGSLCLATGLGEEMIV- 843 (887)
Q Consensus 771 r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~- 843 (887)
.+.|.+.++.++..++|+.+|||+-|+-..| |++++|||+| |+||++-......+ |.. |+ +|-
T Consensus 343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~------l~~-~l---lv~P 412 (726)
T PRK14501 343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE------LAE-AL---LVNP 412 (726)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHH------hCc-Ce---EECC
Confidence 2457788999999999999999999988888 9999999999 55666433222221 110 22 333
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHhhc
Q 002729 844 NSMKEYEERAVSLALDR-QKLQALTNKLKSVR 874 (887)
Q Consensus 844 ~~~~~y~~~a~~l~~d~-~~~~~~~~~~~~~~ 874 (887)
.|.++..+...++.+++ +.+....+++++..
T Consensus 413 ~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v 444 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEEEQRERMQAMQERL 444 (726)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68889888888887743 34433334555553
No 302
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.29 E-value=0.011 Score=64.33 Aligned_cols=394 Identities=11% Similarity=0.011 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 002729 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAW-KEKGDIDLAIRYYLVAI 94 (887)
Q Consensus 16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 94 (887)
+.+...|...+...|.....|...|..-.+.|..+.+.+.|++.+..-|.+...|...-... ...|+.+.-...|+++.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 55667788888889988889999999999999999999999999999998888777654443 35677888888899988
Q ss_pred hcCCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhh-
Q 002729 95 ELRPN---FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ------GLVQEAYSCYLEALRI- 164 (887)
Q Consensus 95 ~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~- 164 (887)
..... ....|-.....-..++++..-..+|++.++.-......++..=.-+.++ -..+++.+.-....+.
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 76544 3457777777778889999999999999876433222222111111111 1122222211111100
Q ss_pred -CCC---hHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CC
Q 002729 165 -QPT---FAIAWSNLA-GLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT-----RP 234 (887)
Q Consensus 165 -~p~---~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p 234 (887)
.+. ..+.+..-+ .+-...+.++++...+.+. ....-.++.......+.+..++..+.. .|
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~----------~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkp 291 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRI----------VSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKP 291 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHH----------HHHHHHHHHhhHhHHHHHHhhhhhccccccccCc
Confidence 000 000000000 0000001111111111111 111112333333444455555555542 12
Q ss_pred C----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCChHHHHh
Q 002729 235 N----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL-QPSHPQALTN 309 (887)
Q Consensus 235 ~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 309 (887)
. ...|......-...|+++...-.+++++--.....+.|...+......|+.+-|...+..+.+. .|..+.+...
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 1 4566777777788899999999999998777777889999999999999999998888888776 4566777777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHH---HHHHHHhcCCCC----HHHHHHHHHHH
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAIS---CYNEVLRIDPLA----ADGLVNRGNTY 382 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~----~~~~~~l~~~~ 382 (887)
-+......|++..|..++++..+..|+...+-...+.....+|+.+.+.. ++..... ...+ ...+...++..
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHH
Confidence 77778888899999999999998888888887777888888888888884 3332222 1122 22344444433
Q ss_pred -HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC
Q 002729 383 -KEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG 420 (887)
Q Consensus 383 -~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 420 (887)
.-.++.+.|...+.++++..|.+...+..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 34578999999999999999999888888777766654
No 303
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.27 E-value=0.0084 Score=62.25 Aligned_cols=428 Identities=12% Similarity=0.050 Sum_probs=248.3
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
++++...+-.+|.+++-.+.++++....|--+.+|......-+..+++.....+|.+++...-+ ...|......-.+.+
T Consensus 45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~lYl~YIRr~n 123 (660)
T COG5107 45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWMLYLEYIRRVN 123 (660)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHHHHHHHHHhhC
Confidence 5788899999999999999999999888888888888777778888999999999999875433 444433332222222
Q ss_pred ---------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCCHH-HHHHHH
Q 002729 82 ---------DIDLAIRYYLVAIELRPNFADAWSNLASAYMR---------KGRLNEAAQCCRQALALNPLLVD-AHSNLG 142 (887)
Q Consensus 82 ---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~-~~~~la 142 (887)
..-+|.+..-...-.+|.....|...+..+.. +.+.+.-...|.+++...-.+.+ .|...-
T Consensus 124 ~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~ 203 (660)
T COG5107 124 NLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYE 203 (660)
T ss_pred cccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHH
Confidence 12233333333333467767777776665532 34556667778888765433322 221111
Q ss_pred H---------HHHHcC----ChHHHHHHHHHHHhh-------CCChHHH-----------HHHHHHHHHHc-----CC-H
Q 002729 143 N---------LMKAQG----LVQEAYSCYLEALRI-------QPTFAIA-----------WSNLAGLFMES-----GD-L 185 (887)
Q Consensus 143 ~---------~~~~~g----~~~~A~~~~~~al~~-------~p~~~~~-----------~~~la~~~~~~-----g~-~ 185 (887)
. .-.-.| -|-.|...+++...+ +|-+... |.+....-... |+ .
T Consensus 204 ~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~ 283 (660)
T COG5107 204 NFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPH 283 (660)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcH
Confidence 1 111111 234555555554433 2222111 22222221111 11 1
Q ss_pred H-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHh
Q 002729 186 N-RALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIG 264 (887)
Q Consensus 186 ~-~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 264 (887)
. .---.+++++...+-.+++|+.....+...++-+.|+...++.....|. ....++..|...++-++...+|+++..
T Consensus 284 ~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 284 EQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 1 1122344555555555666666666666666666666666666655554 333445555555555555555554432
Q ss_pred cCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhH
Q 002729 265 CDPRFLEAYNNLGNALKD---VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPF 341 (887)
Q Consensus 265 ~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 341 (887)
. ..-.+..+..-.. .|+++...+++-+-.. .-.-++......-.+..-.+.|..+|-++-+..--...+|
T Consensus 362 ~----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vy 434 (660)
T COG5107 362 D----LKRKYSMGESESASKVDNNFEYSKELLLKRIN---KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVY 434 (660)
T ss_pred H----HHHHHhhhhhhhhccccCCccccHHHHHHHHh---hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCccee
Confidence 0 0000000100000 1222222222211111 2223444444555566667888888888876652323333
Q ss_pred hhHH-HHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHh
Q 002729 342 NNLA-VIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKD 418 (887)
Q Consensus 342 ~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~ 418 (887)
..-| .-+...|++.-|-..|+-.+...|+++......-..+...++-+.|...|+++++.-... ..+|..+...-.+
T Consensus 435 i~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~ 514 (660)
T COG5107 435 IYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESM 514 (660)
T ss_pred eeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHh
Confidence 2222 224567899999999999999999998888888888899999999999999887653332 5577777777788
Q ss_pred CCCHHHHHHHHHHHHHcCCCC
Q 002729 419 SGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 419 ~g~~~~A~~~~~~al~~~p~~ 439 (887)
-|+...+..+=++..+..|..
T Consensus 515 ~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 515 VGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hcchHHHHhHHHHHHHHcCcH
Confidence 888888888888888887764
No 304
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=2.2e-05 Score=85.19 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=111.1
Q ss_pred EEEEecCC--CCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 714 FIFACFNQ--LYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 714 ~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
+.++++++ ..|..+.+++++..+....|+..++++|.++.....+...+...+. .+.|.|.|.++..+....+..+|
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGL-EDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCC-CCcEEEecccCHHHHHHHHHhCC
Confidence 44555554 3589999999999988888878888888766533455667777776 68899999998777777888899
Q ss_pred EEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc-C-CHHHHHHHHHHHhcCHHHHHHHHH
Q 002729 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV-N-SMKEYEERAVSLALDRQKLQALTN 868 (887)
Q Consensus 792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~-~-~~~~y~~~a~~l~~d~~~~~~~~~ 868 (887)
+++-|+.+.| |.+++|||++|+|||+...+....-+.. |..+ ++. . +.++++.....+..+.+.++.+..
T Consensus 279 ~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~------~~~g-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 279 VFVLPSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVED------GETG-LLVPPGDVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred EEEeccccccchHHHHHHHhcCCcEEECCCCChHHHhcC------CCce-EecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999977655 8899999999999997766555543332 1123 333 2 579999999999998877777766
Q ss_pred HH
Q 002729 869 KL 870 (887)
Q Consensus 869 ~~ 870 (887)
..
T Consensus 352 ~~ 353 (381)
T COG0438 352 AA 353 (381)
T ss_pred HH
Confidence 33
No 305
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.17 E-value=7.6e-05 Score=63.23 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=77.7
Q ss_pred HhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 002729 308 TNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA----ADGLVNRGNTYK 383 (887)
Q Consensus 308 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~ 383 (887)
-.-|.++.+.|+.+.|++.|.+++...|..+.+|++.+..+.-+|+.++|+..+++++++.... -.++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3446677778888888888888888888888888888888888888888888888888875433 347788888888
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 002729 384 EIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 384 ~~g~~~~A~~~~~~al~~~p~ 404 (887)
..|+-+.|...|+.+-++...
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 899999999888888777654
No 306
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0021 Score=61.79 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-------------------ADAWSNLASAYMRKGRLNEAAQCCRQA 127 (887)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (887)
...|...-.++.+....++|..-+...-+.+..+ .......+.+....|+..+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4556666666667777776666555544432110 011222344444555555555444433
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Q 002729 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-PTFPDAY 206 (887)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 206 (887)
... ...+..........+..++.+++-+ ..+.+.++.++.-.+.|.-....+.+.++.+ |..+...
T Consensus 149 ~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 149 KTV-------VSKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred HHH-------HHHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 211 1111122222222244444444433 2345566666666777777777777777766 4556666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC-------ChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002729 207 LNLGNVYKALGMPQEAIMCYQRAVQTRP-------NAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNA 279 (887)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 279 (887)
..++.+-.+.|+.+.|..+|+..-+... ......+.+.++.-.+++.+|...+.+++..+|.++.+.++.+.+
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 6777777777777777777764433211 133444555566666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 002729 280 LKDVGRVDEAIQCYNQCLSLQPS 302 (887)
Q Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~ 302 (887)
+...|+...|++..+.+++..|.
T Consensus 296 llYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHHhccCCc
Confidence 66667777777766666666654
No 307
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.16 E-value=9.1e-06 Score=85.47 Aligned_cols=68 Identities=28% Similarity=0.268 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002729 368 DPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA---HANLASAYKDSGHVEAAIKSYKQALLL 435 (887)
Q Consensus 368 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (887)
+|+++..++++|.+|.++|++++|+..|+++++++|++.++ |+++|.+|..+|+.++|++.+++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56666777777777777777777777777777777776643 777777777777777777777777775
No 308
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.15 E-value=8.1e-06 Score=89.36 Aligned_cols=98 Identities=11% Similarity=0.018 Sum_probs=64.1
Q ss_pred EEEcCCC-C------cHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccc-
Q 002729 772 IIFTDVA-M------KQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI- 842 (887)
Q Consensus 772 ~~~~~~~-~------~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~- 842 (887)
|+|.|.. + ..++.++++.||+++-|+.|.| |.|.+|||+||+||||-....|.+=+-. +...-+-.+-+|
T Consensus 450 vif~P~~L~~~~~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E-~v~~~~~~gi~V~ 528 (590)
T cd03793 450 VVFHPEFLSSTNPLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEE-HIEDPESYGIYIV 528 (590)
T ss_pred EEEcccccCCCCCcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHH-HhccCCCceEEEe
Confidence 7887731 1 2356777899999999999999 9999999999999999887766321110 111000011033
Q ss_pred -------cCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002729 843 -------VNSMKEYEERAVSLALDRQKLQALTNKLK 871 (887)
Q Consensus 843 -------~~~~~~y~~~a~~l~~d~~~~~~~~~~~~ 871 (887)
..+.++..+...+++++ +.++++.++-+
T Consensus 529 ~r~~~~~~e~v~~La~~m~~~~~~-~~r~~~~~r~~ 563 (590)
T cd03793 529 DRRFKSPDESVQQLTQYMYEFCQL-SRRQRIIQRNR 563 (590)
T ss_pred cCCccchHHHHHHHHHHHHHHhCC-cHHHHHHHHHH
Confidence 34677888888888754 45555555543
No 309
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00069 Score=64.40 Aligned_cols=193 Identities=15% Similarity=0.148 Sum_probs=119.4
Q ss_pred hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHh
Q 002729 236 AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFL------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTN 309 (887)
Q Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (887)
...|..-+.+|...+++++|...+.++.+...++. .++-..+.+..+...+.|+..+++++
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------------- 97 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------------- 97 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------
Confidence 33444455566666777777777777664333322 23333444444555555555555554
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHH
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA------ADGLVNRGNTYK 383 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~ 383 (887)
...|.+.|..+-|-..++++-+. .+..++++|+++|++++.+-..+ .+.+-..++++.
T Consensus 98 -s~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 98 -SELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred -HHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 34566666666666666655432 34567777788887776653221 235556677888
Q ss_pred HcCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCChHHHHHHHHHhhhc
Q 002729 384 EIGRVTDAIQDYIRAITI------RPTMAEAHANLASAYKDSGHVEAAIKSYKQALLL----RPDFPEATCNLLHTLQCV 453 (887)
Q Consensus 384 ~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~ 453 (887)
+..++++|...+.+-... .++....+.....+|.-..++..|..+|+...++ .|++..+..+|+..|-.
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~- 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE- 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-
Confidence 888888888777765432 3444556666677777788999999999987775 45666677777776654
Q ss_pred CChhh
Q 002729 454 CSWED 458 (887)
Q Consensus 454 g~~~~ 458 (887)
|+.++
T Consensus 241 gD~E~ 245 (308)
T KOG1585|consen 241 GDIEE 245 (308)
T ss_pred CCHHH
Confidence 44443
No 310
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.12 E-value=2.9e-05 Score=77.07 Aligned_cols=153 Identities=13% Similarity=0.099 Sum_probs=116.2
Q ss_pred EEecCCCCCCCHHHHHHHHHHHhhcC------CceEEEecCC--hhhH---HHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729 716 FACFNQLYKMDPEIFNTWCNILRRVP------NSALWLLRFP--AAGE---MRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (887)
Q Consensus 716 ~~~~~~~~k~~~~~~~~~~~il~~~p------~~~l~~~~~~--~~~~---~~l~~~~~~~g~~~~r~~~~~~~~~~~~~ 784 (887)
...--|+.|+++ ++++++--+.+.| +.+|.|+|.- ..+. ..|+..+.++.|+ +.|.|.--+|+++..
T Consensus 274 ~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~Py~~lv 351 (465)
T KOG1387|consen 274 SLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVPYEKLV 351 (465)
T ss_pred EEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCCHHHHH
Confidence 334446789999 8998887776554 4789998842 2222 4678899999994 669999999999999
Q ss_pred HhccCCcEEecC-CCCCCchhHHHHHHhCC-ceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-CHH
Q 002729 785 RRSSLADLFLDT-PLCNAHTTGTDILWAGL-PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-DRQ 861 (887)
Q Consensus 785 ~~~~~~d~~ld~-~~~~g~~t~~eal~~gv-Pvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~-d~~ 861 (887)
.+++.|-+-+.+ .-..=|.+++|+|++|+ ||+--.|...-.-|... .|-+-.+.+.|.+||++..++... |.+
T Consensus 352 ~lL~~a~iGvh~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~----~G~~tGFla~t~~EYaE~iLkIv~~~~~ 427 (465)
T KOG1387|consen 352 ELLGKATIGVHTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPW----DGETTGFLAPTDEEYAEAILKIVKLNYD 427 (465)
T ss_pred HHhccceeehhhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeecc----CCccceeecCChHHHHHHHHHHHHcCHH
Confidence 999999999999 55555999999999997 55544454443333322 243333889999999999999886 888
Q ss_pred HHHHHHHHHHhhc
Q 002729 862 KLQALTNKLKSVR 874 (887)
Q Consensus 862 ~~~~~~~~~~~~~ 874 (887)
.|..+|...|...
T Consensus 428 ~r~~~r~~AR~s~ 440 (465)
T KOG1387|consen 428 ERNMMRRNARKSL 440 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 8999998888764
No 311
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.09 E-value=4.4e-05 Score=83.17 Aligned_cols=130 Identities=11% Similarity=0.143 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhH
Q 002729 727 PEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTG 805 (887)
Q Consensus 727 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~ 805 (887)
+..++.+.++.+++|+..|-| |.+......|.+. .+. ++-+.+.|..+ .+.-..|..||++||+...+| +.++
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y---~nvvly~~~~~-~~l~~ly~~~dlyLdin~~e~~~~al 364 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY---DNVKLYPNITT-QKIQELYQTCDIYLDINHGNEILNAV 364 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc---CCcEEECCcCh-HHHHHHHHhccEEEEccccccHHHHH
Confidence 999999999999999999998 6544434667666 555 34455555554 455678999999999999988 9999
Q ss_pred HHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccc-cCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002729 806 TDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI-VNSMKEYEERAVSLALDRQKLQALTNKL 870 (887)
Q Consensus 806 ~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~-~~~~~~y~~~a~~l~~d~~~~~~~~~~~ 870 (887)
.||+..|+|||+..-......... ++.++ ..+.++++++.+.+..|++.++..-..-
T Consensus 365 ~eA~~~G~pI~afd~t~~~~~~i~--------~g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q 422 (438)
T TIGR02919 365 RRAFEYNLLILGFEETAHNRDFIA--------SENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQ 422 (438)
T ss_pred HHHHHcCCcEEEEecccCCccccc--------CCceecCCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999998876544332211 12133 3789999999999999998655543333
No 312
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=98.05 E-value=6e-05 Score=82.70 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=107.3
Q ss_pred CCCCCCCCCCcEEEEecCCCC--CCCHHHHHHHHHHHhhcCC----ceEEEecCChh--------hHHHHHHHHHH----
Q 002729 703 KRSDYGLPEDKFIFACFNQLY--KMDPEIFNTWCNILRRVPN----SALWLLRFPAA--------GEMRLRAYAVA---- 764 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~~~~~~--k~~~~~~~~~~~il~~~p~----~~l~~~~~~~~--------~~~~l~~~~~~---- 764 (887)
.|+.+| +..++.+..|+. |..+.-++++.++|++.|+ .+|++++.+.. -+..+.+.+.+
T Consensus 278 lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~ 354 (487)
T TIGR02398 278 IRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGR 354 (487)
T ss_pred HHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhc
Confidence 455665 567888999984 9999999999999999996 58888875531 12233333322
Q ss_pred ---cCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCC----ceeeecccchhhhhHHHHHHhcC
Q 002729 765 ---QGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGL----PMITLPLEKMATRVAGSLCLATG 836 (887)
Q Consensus 765 ---~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gv----Pvvt~~g~~~~~r~~~~~l~~~g 836 (887)
.|. ..-+.|.+.++.++..++|+.+||+|.|.-..| ++++.|.++|+. |+|. |+.+++. ..
T Consensus 355 fg~~~~-~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~-- 423 (487)
T TIGR02398 355 FARIGW-TPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VE-- 423 (487)
T ss_pred cCCCCC-ccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hh--
Confidence 244 344677889999999999999999999998888 999999999988 6663 3333221 11
Q ss_pred CCCcccc--CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 002729 837 LGEEMIV--NSMKEYEERAVSLAL-DRQKLQALTNKLKSVR 874 (887)
Q Consensus 837 ~~~~~~~--~~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~ 874 (887)
+.+.+++ .|.++..+...+..+ ..+.+++--+++++..
T Consensus 424 l~~AllVNP~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v 464 (487)
T TIGR02398 424 LKGALLTNPYDPVRMDETIYVALAMPKAEQQARMREMFDAV 464 (487)
T ss_pred cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1221333 677777666555555 4444444444555443
No 313
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.04 E-value=6.9e-05 Score=79.01 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=46.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 29 NPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAEC---YGNMANAWKEKGDIDLAIRYYLVAIEL 96 (887)
Q Consensus 29 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 96 (887)
+|+++.+++.+|.+|+.+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|+.+++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566667777777777777777777777777777766643 677777777777777777777776665
No 314
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.04 E-value=0.00085 Score=74.30 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=90.6
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (887)
Q Consensus 712 ~~~~~~~~~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~ 790 (887)
..++|.++++.. +....+.+...+.+...+.-.++..|...... ..+ +++|.+.++++..++ +..|
T Consensus 239 ~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~---------~~~-~~~v~~~~~~p~~~l---l~~~ 305 (401)
T cd03784 239 RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA---------EDL-PDNVRVVDFVPHDWL---LPRC 305 (401)
T ss_pred CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc---------cCC-CCceEEeCCCCHHHH---hhhh
Confidence 456777887764 34456667666667666555555555433211 233 688999999876655 4669
Q ss_pred cEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHH
Q 002729 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALT 867 (887)
Q Consensus 791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~---~~~~y~~~a~~l~~d~~~~~~~~ 867 (887)
|+++ ..+|..|+.|||++|||+|.++-..= .-.-+..+...|..- .+.. +.++..+...++.+| +.+++.+
T Consensus 306 d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~-~~~~~~~ 379 (401)
T cd03784 306 AAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDP-PSRRRAA 379 (401)
T ss_pred heee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCH-HHHHHHH
Confidence 9998 56667999999999999998865421 222344556667655 4432 577766666666665 4455555
Q ss_pred HHHH
Q 002729 868 NKLK 871 (887)
Q Consensus 868 ~~~~ 871 (887)
+..+
T Consensus 380 ~~~~ 383 (401)
T cd03784 380 ALLR 383 (401)
T ss_pred HHHH
Confidence 4444
No 315
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.03 E-value=0.00077 Score=71.23 Aligned_cols=213 Identities=19% Similarity=0.150 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID 84 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 84 (887)
+.....+..+.++-++.-.++++.+|+.+.+|..++.- ......+|.++++++++...... .........|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~l----g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASL----GKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhh----chhhhhhcccchh
Confidence 34456677788888888888888888888888777642 23345667777777665422110 0000000000000
Q ss_pred HHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729 85 LAIRYYLVAIELRPN--FADAWSNLASAYMRKGRLNEAAQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLE 160 (887)
Q Consensus 85 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (887)
+ ....... ...+...++.+..+.|+.++|++.++.+++..|. +..++.++..++...+.+.++...+.+
T Consensus 248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 0000000 1223345555666666666666666666555443 334555566666666666666555555
Q ss_pred HHhh-CCChHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHhhCCCCHHHHHHHH------HHHHHcC
Q 002729 161 ALRI-QPTFAIAWSNLAGLFMES-GD---------------LNRALQYYKEAVKLKPTFPDAYLNLG------NVYKALG 217 (887)
Q Consensus 161 al~~-~p~~~~~~~~la~~~~~~-g~---------------~~~A~~~~~~~l~~~~~~~~~~~~l~------~~~~~~g 217 (887)
.-+. -|+++...+..+.+..+. ++ -..|.+.+.++++.+|..+..+..+- .-+.+.|
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrG 400 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRG 400 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCC
Confidence 4322 233443333333322211 11 12355666677776666554333211 1233444
Q ss_pred ChHHHHHHHHHHHh
Q 002729 218 MPQEAIMCYQRAVQ 231 (887)
Q Consensus 218 ~~~~A~~~~~~~~~ 231 (887)
+ .||+.+---.+.
T Consensus 401 D-SEAiaYAf~hL~ 413 (539)
T PF04184_consen 401 D-SEAIAYAFFHLQ 413 (539)
T ss_pred c-HHHHHHHHHHHH
Confidence 3 555555444444
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.03 E-value=3.4e-05 Score=70.21 Aligned_cols=91 Identities=25% Similarity=0.302 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC----
Q 002729 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKEI----------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---- 420 (887)
Q Consensus 355 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---- 420 (887)
+.|.+.++.....+|.+++.+++-|.++..+ ..+++|+.-|++++.++|+..++++.+|.+|...+
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 4444444444445555555554444444433 12345555666666666666666666666665544
Q ss_pred -------CHHHHHHHHHHHHHcCCCChHHHHH
Q 002729 421 -------HVEAAIKSYKQALLLRPDFPEATCN 445 (887)
Q Consensus 421 -------~~~~A~~~~~~al~~~p~~~~~~~~ 445 (887)
.+++|..+|+++.+.+|++......
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 2678888999999999998654433
No 317
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.00 E-value=8.7e-06 Score=65.94 Aligned_cols=64 Identities=31% Similarity=0.507 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002729 372 ADGLVNRGNTYKEIGRVTDAIQDYIRAITI----RPT---MAEAHANLASAYKDSGHVEAAIKSYKQALLL 435 (887)
Q Consensus 372 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (887)
..++.++|.+|..+|++++|+.+|++++++ .++ ...++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445666666666666666666666666644 111 2456777777777777777777777777664
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.99 E-value=0.0011 Score=70.72 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=94.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCC-chhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002729 311 GNIYMEWNMLPAAASYYKATLAVTTGL-SAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389 (887)
Q Consensus 311 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 389 (887)
|......|+...|.+++..++...|.. .....+++.++.+.|-..+|-.++.+++.++...+-.++.+|+.+..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 333446899999999999999988864 3457899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 390 DAIQDYIRAITIRPTMAEAHANLASAYK 417 (887)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~la~~~~ 417 (887)
.|++.|+++++.+|++++.-..|-.+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999988777766554
No 319
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.98 E-value=0.00018 Score=74.26 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=85.2
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002729 306 ALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQ-QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE 384 (887)
Q Consensus 306 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 384 (887)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+-.. .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344444555555556666666666654444455556666666444 3444457777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChH
Q 002729 385 IGRVTDAIQDYIRAITIRPTMA---EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPE 441 (887)
Q Consensus 385 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 441 (887)
.|+.+.|..+|++++..-|... .+|......-.+.|+.+...++.+++.+..|++..
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 7777777777777776655443 57777777888888888888888888888777443
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0042 Score=58.87 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHc
Q 002729 184 DLNRALQYYKEAVKLKPTFP------DAYLNLGNVYKAL-GMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYER 249 (887)
Q Consensus 184 ~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~ 249 (887)
+.++|...+++++++..+-. ..+..++.+|... .++++|+..|+++-+.... ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 44555555554444332211 1223445555443 5566666666665543222 22233334444445
Q ss_pred CChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002729 250 GQADMAILYYKQAIGCDPRFL-------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303 (887)
Q Consensus 250 g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (887)
+++.+|+..|++.....-++. +.++.-|.+++-..+.-.+...+++..+.+|..
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 555555555555543222221 112223333343344444444444444455543
No 321
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.94 E-value=0.0027 Score=69.26 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=93.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
..++|.+++...-. .++++...+.+...|...++-.+. . +. ...++ ++.+...++.|..+.+ ..+|
T Consensus 237 ~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~--~-~~------~~~~~-p~n~~v~~~~p~~~~l---~~ad 302 (406)
T COG1819 237 RPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG--A-RD------TLVNV-PDNVIVADYVPQLELL---PRAD 302 (406)
T ss_pred CCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc--c-cc------ccccC-CCceEEecCCCHHHHh---hhcC
Confidence 45677787777633 677776666676776444443332 1 10 12445 7889999998877654 7799
Q ss_pred EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002729 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQALTN 868 (887)
Q Consensus 792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~~~~~ 868 (887)
+++ ..+|.+||.|||..|||+|.+++. +-.-.-+.-+..+|... .+- .+++.-.+...++.+|+..+++.+.
T Consensus 303 ~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~ 377 (406)
T COG1819 303 AVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSYRRAAER 377 (406)
T ss_pred EEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 997 567799999999999999999876 22223344566678876 444 4566666666667777776666554
Q ss_pred HHH
Q 002729 869 KLK 871 (887)
Q Consensus 869 ~~~ 871 (887)
-.+
T Consensus 378 ~~~ 380 (406)
T COG1819 378 LAE 380 (406)
T ss_pred HHH
Confidence 443
No 322
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0047 Score=58.52 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=39.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCh------HHHHHHHHHHH
Q 002729 113 RKGRLNEAAQCCRQALALNPLLVD------AHSNLGNLMKAQ-GLVQEAYSCYLEALRIQPTF------AIAWSNLAGLF 179 (887)
Q Consensus 113 ~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 179 (887)
+.++.++|..++++++++..+... .+..+|.+|... .++++|+.+|+++-+..... -..+...+...
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 344777777777776654322111 223444444443 45555555555554432111 11222333334
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 002729 180 MESGDLNRALQYYKEAVK 197 (887)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~ 197 (887)
...++|.+|+..|++...
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555444
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.92 E-value=9.4e-05 Score=67.41 Aligned_cols=67 Identities=27% Similarity=0.480 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHD----------YDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
|+.|.+.++.....+|.+.+.++.-|.++..+.+ +++|+.-|++++.++|+...+++.+|.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 6778888888888999999988888888776643 456666777777777777777777777776544
No 324
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.91 E-value=0.0004 Score=71.81 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002729 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR-KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ 148 (887)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 148 (887)
|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 34444444444445555555555554333344455555555444 23333355555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhhCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002729 149 GLVQEAYSCYLEALRIQPTFA---IAWSNLAGLFMESGDLNRALQYYKEAVKLKPT 201 (887)
Q Consensus 149 g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (887)
++.+.|..+|++++..-+... ..|......-.+.|+.+...++.+++.+..|+
T Consensus 84 ~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 84 NDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp T-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 555555555555554433332 34444444444445555555555555444444
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.043 Score=68.87 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-hCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYE-RNPLR--TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK 80 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~-~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 80 (887)
.+|.+-++.+.|.+|+-.+++-.. ..+.+ ...+..+-.+|...++++........ ....| ............
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHhh
Confidence 467888899999999999998411 11111 23344455588888888877666653 11222 244555667788
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCChHHHHHH
Q 002729 81 GDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLG-NLMKAQGLVQEAYSC 157 (887)
Q Consensus 81 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~~g~~~~A~~~ 157 (887)
|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++..+-++.++ .+..+.++++.-...
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999999999988877777777778888888887766666555444444444333 233555665554444
No 326
>PLN03004 UDP-glycosyltransferase
Probab=97.91 E-value=0.00027 Score=77.62 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=95.9
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-------hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHH
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-------GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHI 784 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~ 784 (887)
..++|.||+....+.++.++-.+.-|...+...||.+..+.. ....+-+-|.+. +....+++.++.|..+.|
T Consensus 270 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er-~~~~g~~v~~W~PQ~~iL 348 (451)
T PLN03004 270 KSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSR-TEDKGMVVKSWAPQVPVL 348 (451)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHh-ccCCcEEEEeeCCHHHHh
Confidence 459999999999999999999999999999999999874311 011122222222 223558889999988876
Q ss_pred HhccCCcE--EecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHH-hcCCCCcccc------CCHHHHHHHHHH
Q 002729 785 RRSSLADL--FLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVS 855 (887)
Q Consensus 785 ~~~~~~d~--~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~g~~~~~~~------~~~~~y~~~a~~ 855 (887)
...+| |+ ..+|-+|++||+++|||+|+++--.= ...-+..+. ..|..- -+. -+.++..+...+
T Consensus 349 ---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~D-Q~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~ 420 (451)
T PLN03004 349 ---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYAE-QRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQE 420 (451)
T ss_pred ---CCCccceEe---ccCcchHHHHHHHcCCCEEecccccc-chhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHH
Confidence 44555 75 57788999999999999999874211 111122332 234443 221 266777776667
Q ss_pred HhcCHHHHHH
Q 002729 856 LALDRQKLQA 865 (887)
Q Consensus 856 l~~d~~~~~~ 865 (887)
+..|+..+++
T Consensus 421 vm~~~~~r~~ 430 (451)
T PLN03004 421 IIGECPVRER 430 (451)
T ss_pred HhcCHHHHHH
Confidence 7777554443
No 327
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.90 E-value=0.00032 Score=75.64 Aligned_cols=315 Identities=11% Similarity=0.020 Sum_probs=156.2
Q ss_pred eeeeecCCCCCChhHHhhhHHhhcCCC-CCcEEEEEecCCCCChH----HHHHHHhhc----CceEECCC---CC-----
Q 002729 538 RVGYVSSDFGNHPLSHLMGSVFGMHNK-ENVEVFCYALSPNDGTE----WRQRTQSEA----EHFVDVSA---MS----- 600 (887)
Q Consensus 538 riGyvs~d~~~h~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~---~~----- 600 (887)
||.+|.+ .-|-.-.+.+++..+.+ ..||+.+..+|+..++. ........+ +....+.. -+
T Consensus 2 ki~~v~G---tRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (365)
T TIGR03568 2 KICVVTG---TRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAGMAKSM 78 (365)
T ss_pred eEEEEEe---cChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCCCccccccCCCCCCCHHHHH
Confidence 4555553 34544567788887776 46999998899876543 222222222 22222321 11
Q ss_pred ---HHHHHHHHHhCCCeEEEecC-CcCCCCchhhhhcCCCceEEeccccCCCCCC-CcccEE----EecCccCCCCcCC-
Q 002729 601 ---SDMIAKLINEDKIQILINLN-GYTKGARNEIFAMQPAPIQVSYMGFPGTTGA-SYIDYL----VTDEFVSPLRYAH- 670 (887)
Q Consensus 601 ---~~~~~~~i~~~~~dil~~~~-~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~-~~~d~~----~~d~~~~p~~~~~- 670 (887)
..++.+.+.+.++|+++-.. +.+.-.-.-.....--||-=.--|- -|.|. ..+.-. +++-.+.|.+...
T Consensus 79 ~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~-rs~~~~eE~~r~~i~~la~l~f~~t~~~~~ 157 (365)
T TIGR03568 79 GLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGE-VTEGAIDESIRHAITKLSHLHFVATEEYRQ 157 (365)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCc-cCCCCchHHHHHHHHHHHhhccCCCHHHHH
Confidence 15667788899999886433 2211111112222345665221121 11111 111111 2233334433211
Q ss_pred ------CCccceeecCCccccCCCccccccCCCCCCCCCCCCCCCCC-CcEEEEecCCCC--CCC-H-HHHHHHHHHHhh
Q 002729 671 ------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPE-DKFIFACFNQLY--KMD-P-EIFNTWCNILRR 739 (887)
Q Consensus 671 ------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~-~~~~~~~~~~~~--k~~-~-~~~~~~~~il~~ 739 (887)
.-.++++..-+..+..-. ...........+++|++. ..+++..+++.. |.. . .+..+...+...
T Consensus 158 ~L~~eg~~~~~i~~tG~~~iD~l~-----~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~ 232 (365)
T TIGR03568 158 RVIQMGEDPDRVFNVGSPGLDNIL-----SLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDEL 232 (365)
T ss_pred HHHHcCCCCCcEEEECCcHHHHHH-----hhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHh
Confidence 112233322211110000 000011123456678863 367777777764 443 2 233333333222
Q ss_pred cCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729 740 VPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (887)
Q Consensus 740 ~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~ 819 (887)
..+..+++...++. ...+.+.+.+..-..++|.+.+.+++.+++.++..||+++ -+++..+-||..+|+|||++.
T Consensus 233 ~~~~~vi~P~~~p~-~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~ 307 (365)
T TIGR03568 233 NKNYIFTYPNADAG-SRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIG 307 (365)
T ss_pred ccCCEEEEeCCCCC-chHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeec
Confidence 22332322222232 2223333333321146799999999999999999999999 444455589999999999885
Q ss_pred ccchhhhhHHHHHHhcCCCCcc-ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcccCCCCCc
Q 002729 820 LEKMATRVAGSLCLATGLGEEM-IVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDT 882 (887)
Q Consensus 820 g~~~~~r~~~~~l~~~g~~~~~-~~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~~~~l~d~ 882 (887)
+...+|.. |-+- + |-.+.++.++.+.+ +.|++.++.+ .. ...|..|+
T Consensus 308 -~R~e~~~~-------g~nv-l~vg~~~~~I~~a~~~-~~~~~~~~~~----~~--~~~pygdg 355 (365)
T TIGR03568 308 -TRQKGRLR-------ADSV-IDVDPDKEEIVKAIEK-LLDPAFKKSL----KN--VKNPYGDG 355 (365)
T ss_pred -CCchhhhh-------cCeE-EEeCCCHHHHHHHHHH-HhChHHHHHH----hh--CCCCCCCC
Confidence 34444432 3333 3 55688988887777 4555433332 21 24667776
No 328
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0012 Score=65.71 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=109.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhc-cCCC---chhHhhHHHHHHHcC
Q 002729 277 GNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAV-TTGL---SAPFNNLAVIYKQQG 352 (887)
Q Consensus 277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~g 352 (887)
+.++...|++.+|...+++.++..|.+.-++..--.++...|+...-...+++.+.. +++. ....-.++-.+.+.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 344556677777777777777777777777666667777777777777777777765 4443 233445666777788
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhCCCHHHHHHH
Q 002729 353 NYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM----AEAHANLASAYKDSGHVEAAIKS 428 (887)
Q Consensus 353 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~ 428 (887)
-|++|.+.-++++++|+.+.-+....+.++...|+..++.+...+--..-... ..-|...+.++...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 88888888888888888888888888888888888888887776543321111 22355677788888888888888
Q ss_pred HHHHH
Q 002729 429 YKQAL 433 (887)
Q Consensus 429 ~~~al 433 (887)
|.+-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 87544
No 329
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.89 E-value=0.00029 Score=77.63 Aligned_cols=139 Identities=14% Similarity=0.258 Sum_probs=95.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
..++|.+++......+..++...+.+...|-..++..|.+.. ...+. .+ +++|.+.++++..+. +..+|
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~-~~~~~------~~-~~~v~~~~~~p~~~l---l~~~~ 293 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD-PADLG------EL-PPNVEVRQWVPQLEI---LKKAD 293 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC-hhHhc------cC-CCCeEEeCCCCHHHH---HhhCC
Confidence 447889999987777777776666777776545555554332 21221 23 578999999886544 56799
Q ss_pred EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002729 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (887)
Q Consensus 792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~~~ 866 (887)
+++ ..+|..|++|||.+|+|+|.++...-.. .-+..+...|... .+- -+.++..+...++..|++.++++
T Consensus 294 ~~I---~hgG~~t~~Eal~~G~P~v~~p~~~dq~-~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~ 366 (392)
T TIGR01426 294 AFI---THGGMNSTMEALFNGVPMVAVPQGADQP-MTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERL 366 (392)
T ss_pred EEE---ECCCchHHHHHHHhCCCEEecCCcccHH-HHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHH
Confidence 998 3566678999999999999987553333 3344566778765 443 25678788777888998766655
No 330
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.87 E-value=1.3e-05 Score=64.91 Aligned_cols=64 Identities=33% Similarity=0.628 Sum_probs=46.0
Q ss_pred chhHhhHHHHHHHcCCHHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 338 SAPFNNLAVIYKQQGNYADAISCYNEVLRI----DP---LAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (887)
Q Consensus 338 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 401 (887)
..++.++|.+|..+|++++|+++|++++++ .+ ....++.++|.++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345667777777777777777777777754 11 22457788888888888888888888888764
No 331
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.0013 Score=65.34 Aligned_cols=156 Identities=15% Similarity=0.016 Sum_probs=96.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCh---HHHHHHHHHHHHHcC
Q 002729 108 ASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI-QPTF---AIAWSNLAGLFMESG 183 (887)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g 183 (887)
+......|+..+|....++.++..|.+.-++..--..+...|+...-...+++++.. +++. ..+.-.++-.+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 334445666666666666776666666666666666666666666666666666654 3333 333444555666667
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHhhHHHHHHHcCChHHHHHH
Q 002729 184 DLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQADMAILY 258 (887)
Q Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~la~~~~~~g~~~~A~~~ 258 (887)
-|++|.+..++++++++.+.-+...++.++...|+.+++.+...+.-..-.. ...|...+..+.+.+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 7777777777777777776666666777777777777777666554332111 23344456666666777777777
Q ss_pred HHHHH
Q 002729 259 YKQAI 263 (887)
Q Consensus 259 ~~~~l 263 (887)
|..-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 76654
No 332
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.84 E-value=0.00012 Score=78.30 Aligned_cols=131 Identities=16% Similarity=0.065 Sum_probs=91.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEE
Q 002729 714 FIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLF 793 (887)
Q Consensus 714 ~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ 793 (887)
++++..+++.|... +....|+.+|.+.|.++... +. .++|+|.|+++.++....|+. |+.
T Consensus 170 ~~i~yaG~l~k~~~--------l~~~~~~~~l~i~G~g~~~~----------~~-~~~V~f~G~~~~eel~~~l~~-~~g 229 (333)
T PRK09814 170 KKINFAGNLEKSPF--------LKNWSQGIKLTVFGPNPEDL----------EN-SANISYKGWFDPEELPNELSK-GFG 229 (333)
T ss_pred ceEEEecChhhchH--------HHhcCCCCeEEEECCCcccc----------cc-CCCeEEecCCCHHHHHHHHhc-CcC
Confidence 45666677776421 11135788999999876522 23 578999999999999888876 544
Q ss_pred ecCC------------CCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHH
Q 002729 794 LDTP------------LCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQ 861 (887)
Q Consensus 794 ld~~------------~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~ 861 (887)
|=+. .++...-+.++|++|+|||+.....+..-+.. +-.+ +++++.++..+....+ +++
T Consensus 230 Lv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~------~~~G-~~v~~~~el~~~l~~~--~~~ 300 (333)
T PRK09814 230 LVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVE------NGLG-FVVDSLEELPEIIDNI--TEE 300 (333)
T ss_pred eEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHh------CCce-EEeCCHHHHHHHHHhc--CHH
Confidence 4221 34455558899999999998777665554432 4445 6778989988887775 467
Q ss_pred HHHHHHHHHHhh
Q 002729 862 KLQALTNKLKSV 873 (887)
Q Consensus 862 ~~~~~~~~~~~~ 873 (887)
.+.+|+++.+..
T Consensus 301 ~~~~m~~n~~~~ 312 (333)
T PRK09814 301 EYQEMVENVKKI 312 (333)
T ss_pred HHHHHHHHHHHH
Confidence 788888888764
No 333
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0043 Score=59.19 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF------AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSN 106 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 106 (887)
...+..-+.+|...+++++|...+.++.+-..++ +.++-..+........+.++..+|+++..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~----------- 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE----------- 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------
Confidence 3455566677777888888888888887554433 23444555555556666666666666544
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------hHHHHHHHHHHHH
Q 002729 107 LASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT------FAIAWSNLAGLFM 180 (887)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~ 180 (887)
.|...|..+.|-..++++-+ ....-+.++|+++|++++.+-.. -.+.+...+.++.
T Consensus 100 ---lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 100 ---LYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLV 161 (308)
T ss_pred ---HHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhh
Confidence 33334444433333333321 12223344444444444443111 1223334455555
Q ss_pred HcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----C-hhHHhhHHHHHHHc
Q 002729 181 ESGDLNRALQYYKEAVKL------KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRP----N-AIAFGNLASTYYER 249 (887)
Q Consensus 181 ~~g~~~~A~~~~~~~l~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~-~~~~~~la~~~~~~ 249 (887)
+..++++|-..+.+-... .++....+.....++....+|..|...++...+... + ..+..+|...| ..
T Consensus 162 rl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 162 RLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred hhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 556666555544443221 222223444455555555666666666666544311 1 33344443333 45
Q ss_pred CChHHHHHHHH
Q 002729 250 GQADMAILYYK 260 (887)
Q Consensus 250 g~~~~A~~~~~ 260 (887)
|+.++..+.+.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 56555555443
No 334
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.84 E-value=0.0003 Score=76.74 Aligned_cols=141 Identities=14% Similarity=0.049 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCC-------------cEEEcCCCCcHHHHHhccCC
Q 002729 724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPD-------------QIIFTDVAMKQEHIRRSSLA 790 (887)
Q Consensus 724 k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-------------r~~~~~~~~~~~~~~~~~~~ 790 (887)
+..|.++++..++.++ |+..+++.-.+....+.+++...+.|+... .+.+.+. ..+....|+.+
T Consensus 221 ~~lp~~l~al~~L~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~l~~A 297 (396)
T TIGR03492 221 RNLKLLLRALEALPDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG--RGAFAEILHWA 297 (396)
T ss_pred ccHHHHHHHHHHHhhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec--hHhHHHHHHhC
Confidence 4556888888777655 777666544233335667776766676421 2444432 24567789999
Q ss_pred cEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhc----CCCCccccCCHHHHHHHHHHHhcCHHHHHHH
Q 002729 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLAT----GLGEEMIVNSMKEYEERAVSLALDRQKLQAL 866 (887)
Q Consensus 791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~----g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~ 866 (887)
|++|-. +||+|.|++.+|+|+|..+++... ..+.++... |-.-.++-.+.+...+...++..|++.+.++
T Consensus 298 DlvI~r----SGt~T~E~a~lg~P~Ilip~~~~q--~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~ 371 (396)
T TIGR03492 298 DLGIAM----AGTATEQAVGLGKPVIQLPGKGPQ--FTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPELLERC 371 (396)
T ss_pred CEEEEC----cCHHHHHHHHhCCCEEEEeCCCCH--HHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHHHHHH
Confidence 999954 567779999999999999854321 233333331 4333122355788888888999999999888
Q ss_pred HHHHHhh
Q 002729 867 TNKLKSV 873 (887)
Q Consensus 867 ~~~~~~~ 873 (887)
++..+..
T Consensus 372 ~~~~~~~ 378 (396)
T TIGR03492 372 RRNGQER 378 (396)
T ss_pred HHHHHHh
Confidence 8655443
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0002 Score=67.81 Aligned_cols=91 Identities=26% Similarity=0.325 Sum_probs=70.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 002729 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (887)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (887)
|..+...++|..|+..|.+++.++|..+..+.+.+.++.+.++++.+.....+++++.|+....++.+|........+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 34455556777788888888888888777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHc
Q 002729 425 AIKSYKQALLL 435 (887)
Q Consensus 425 A~~~~~~al~~ 435 (887)
|+..+.++..+
T Consensus 97 aI~~Lqra~sl 107 (284)
T KOG4642|consen 97 AIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHH
Confidence 88888877554
No 336
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.76 E-value=0.00072 Score=69.97 Aligned_cols=232 Identities=14% Similarity=0.106 Sum_probs=115.5
Q ss_pred hcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCCC-----HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcC
Q 002729 560 GMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS-----SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQ 634 (887)
Q Consensus 560 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r 634 (887)
+.+...+++|+.+...... ...+.++...-....+.+-+ ..++.+.|.+.++|++|--...+...-...+. .
T Consensus 25 ~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k-~ 101 (279)
T TIGR03590 25 RALHAQGAEVAFACKPLPG--DLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEKLIK-E 101 (279)
T ss_pred HHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHH-H
Confidence 3343346788877754322 23445555544444444322 34688999999999998544333222112221 1
Q ss_pred CCceEEeccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecC-CccccCCCc--cccccCCCCCC-CCCCCCCCCC
Q 002729 635 PAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVP-HCYFVNDYK--QKNMDVLDPNC-QPKRSDYGLP 710 (887)
Q Consensus 635 ~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp-~~~~~~~~~--~~~~~~~~~~~-~~~r~~~~l~ 710 (887)
..| .+..+.-.+..+. ..|++|-.... . . ...|.+. .| ++-....+. ...+.+....+ ...|.
T Consensus 102 ~~~-~l~~iDD~~~~~~-~~D~vin~~~~-~-~-~~~y~~~---~~~~~~~l~G~~Y~~lr~eF~~~~~~~~~~~----- 168 (279)
T TIGR03590 102 FGR-KILVIDDLADRPH-DCDLLLDQNLG-A-D-ASDYQGL---VPANCRLLLGPSYALLREEFYQLATANKRRK----- 168 (279)
T ss_pred hCC-eEEEEecCCCCCc-CCCEEEeCCCC-c-C-HhHhccc---CcCCCeEEecchHHhhhHHHHHhhHhhhccc-----
Confidence 233 2233333322222 56887754321 1 1 1111110 22 111111110 00011110000 01111
Q ss_pred CCcEEEEecCC--CCCCCHHHHHHHHHHHhhcCCc-eEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 711 EDKFIFACFNQ--LYKMDPEIFNTWCNILRRVPNS-ALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 711 ~~~~~~~~~~~--~~k~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
+...++.+++. ..+++..++++..++. ++. ..++.|.+....+++++..... .+|.+.+.++ +...++
T Consensus 169 ~~~~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~----~~i~~~~~~~--~m~~lm 239 (279)
T TIGR03590 169 PLRRVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEY----PNIILFIDVE--NMAELM 239 (279)
T ss_pred ccCeEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhC----CCEEEEeCHH--HHHHHH
Confidence 11234555553 3456677776665432 232 3345565433355676665543 3688877654 556778
Q ss_pred cCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g 820 (887)
..+|+++- .||+|+.|++++|+|+|.++-
T Consensus 240 ~~aDl~Is----~~G~T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 240 NEADLAIG----AAGSTSWERCCLGLPSLAICL 268 (279)
T ss_pred HHCCEEEE----CCchHHHHHHHcCCCEEEEEe
Confidence 99999995 577999999999999997643
No 337
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.0016 Score=69.15 Aligned_cols=246 Identities=15% Similarity=0.129 Sum_probs=143.0
Q ss_pred HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEe----ccccCCCCCCCcccEEEecCccCCCCcCCCCccce
Q 002729 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS----YMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKL 676 (887)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~----~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~ 676 (887)
-.++-+.|++.++|++|-..|+-.+.-.-......-|+-+. ..|--+-...+..+.+.+. +.. .......++.
T Consensus 80 ~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~-f~~--~~~~~~~~~~ 156 (357)
T COG0707 80 VLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASA-FPK--LEAGVKPENV 156 (357)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeec-ccc--ccccCCCCce
Confidence 46788899999999999888877553222222233566543 2232222222333433331 110 0111111222
Q ss_pred eecCCccccCCCccccccCCCCCCCCCCCCCCCCCCcEE---EEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh
Q 002729 677 VHVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFI---FACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA 753 (887)
Q Consensus 677 ~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~---~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~ 753 (887)
...- .|- .+++..-.....|..... +.++ +|.-+-..+++..+-+++....+ +..++...+...
T Consensus 157 ~~tG------~Pv--r~~~~~~~~~~~~~~~~~--~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~~~ 223 (357)
T COG0707 157 VVTG------IPV--RPEFEELPAAEVRKDGRL--DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGKND 223 (357)
T ss_pred EEec------Ccc--cHHhhccchhhhhhhccC--CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCcch
Confidence 2111 100 011111001112222212 2232 33322234566666665554443 344443333323
Q ss_pred hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhhhHHH
Q 002729 754 GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGS 830 (887)
Q Consensus 754 ~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r~~~~ 830 (887)
.+.++....+.|+ +.+.+... +...+|+.+|+++ .-.|++|..|.+++|+|+|-.+=+.- ....-+-
T Consensus 224 -~~~~~~~~~~~~~----~~v~~f~~--dm~~~~~~ADLvI---sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~ 293 (357)
T COG0707 224 -LEELKSAYNELGV----VRVLPFID--DMAALLAAADLVI---SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAK 293 (357)
T ss_pred -HHHHHHHHhhcCc----EEEeeHHh--hHHHHHHhccEEE---eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHH
Confidence 6677888888887 66666653 4677899999997 57789999999999999998876655 5556678
Q ss_pred HHHhcCCCCccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 831 LCLATGLGEEMIVN---SMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 831 ~l~~~g~~~~~~~~---~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
.|...|..- ++.+ +.+..++...++.++++.+++|+...+..
T Consensus 294 ~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 294 FLEKAGAAL-VIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred HHHhCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888888876 4442 46799999999999999999999998865
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.74 E-value=0.17 Score=58.95 Aligned_cols=416 Identities=16% Similarity=0.071 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHhcCCC----cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC--CcH----HHHHHHHHHHHHcCChH
Q 002729 50 DMCIARNEEALRLEPR----FAECYGNMANAWK-EKGDIDLAIRYYLVAIELRP--NFA----DAWSNLASAYMRKGRLN 118 (887)
Q Consensus 50 ~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~~ 118 (887)
..|+++++-+++..+- .+.+++.+|.++. ...+++.|..++++++.+.. +.. .+...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 5678888887743221 3678899999988 78999999999999987653 322 24556788888888777
Q ss_pred HHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcCChHHHHHHHHHHHhhC--CChHHH--H--HHHHHHHHHcCCHH
Q 002729 119 EAAQCCRQALALNPL----LVDAHSNL--GNLMKAQGLVQEAYSCYLEALRIQ--PTFAIA--W--SNLAGLFMESGDLN 186 (887)
Q Consensus 119 ~A~~~~~~~l~~~p~----~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~--~--~~la~~~~~~g~~~ 186 (887)
|...+++.++.... .....+.+ .......+++..|.+.++...... ..++.+ . ...+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999998876543 12222222 223333479999999999888764 344332 2 22345556667778
Q ss_pred HHHHHHHHHHhhCC------C----CHHHHHHHHH--HHHHcCChHHHHHHHHHHHh---h---CC-------C------
Q 002729 187 RALQYYKEAVKLKP------T----FPDAYLNLGN--VYKALGMPQEAIMCYQRAVQ---T---RP-------N------ 235 (887)
Q Consensus 187 ~A~~~~~~~l~~~~------~----~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~---~---~p-------~------ 235 (887)
++++.++++..... + ...++..+.. ++...|+++.+...++++-+ . .+ +
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 88888877744221 1 1224444433 34556776666665544332 1 11 0
Q ss_pred ------------------------hhHHhhHHHHHHHcCChHHHHHHHHHHHhc----C---CCc----H----------
Q 002729 236 ------------------------AIAFGNLASTYYERGQADMAILYYKQAIGC----D---PRF----L---------- 270 (887)
Q Consensus 236 ------------------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~---p~~----~---------- 270 (887)
...|..-+......+..++|.++++++++. . +.. .
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~ 356 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWL 356 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHH
Confidence 011122234445566666888888877632 1 110 0
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC------ChHHHHhHHHHHHHcCChhHHHHHHH--------
Q 002729 271 -----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQ---PS------HPQALTNLGNIYMEWNMLPAAASYYK-------- 328 (887)
Q Consensus 271 -----~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~-------- 328 (887)
......+....-.+++.+|....+.+.+.. |. .+..++..|..+...|+.+.|+..|.
T Consensus 357 ~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~ 436 (608)
T PF10345_consen 357 RYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCE 436 (608)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhh
Confidence 123344566677799999999988877653 22 36678889999999999999999998
Q ss_pred HHHhccCCCch---hHhhHHHHHHHcCCHHH----HHHHHHHHHhcCCCCHHHHHHHHHH-----HH--HcCCHHHHHHH
Q 002729 329 ATLAVTTGLSA---PFNNLAVIYKQQGNYAD----AISCYNEVLRIDPLAADGLVNRGNT-----YK--EIGRVTDAIQD 394 (887)
Q Consensus 329 ~~~~~~~~~~~---~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~-----~~--~~g~~~~A~~~ 394 (887)
.+....+.+.. +..++..++...+.-.. +.+.++..-....+.+..++..+.+ +. ..-...++...
T Consensus 437 ~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~ 516 (608)
T PF10345_consen 437 AANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH 516 (608)
T ss_pred hhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 33333333222 23345555554444332 3444443322211222222222222 21 12234477777
Q ss_pred HHHHHhcC-C---Cc---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---hHHHH------HHHHHhhhcCChhh
Q 002729 395 YIRAITIR-P---TM---AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF---PEATC------NLLHTLQCVCSWED 458 (887)
Q Consensus 395 ~~~al~~~-p---~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~------~l~~~~~~~g~~~~ 458 (887)
+..+++.. . +. .-++..++..+. .|+..+..+....+..+.... ..... -+...+...|+.++
T Consensus 517 l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~k 595 (608)
T PF10345_consen 517 LQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDK 595 (608)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHH
Confidence 77776654 1 11 223455555555 788888777776666654433 33322 22334666777777
Q ss_pred HhHHHHHHH
Q 002729 459 RDRMFSEVE 467 (887)
Q Consensus 459 a~~~~~~~~ 467 (887)
+.....+..
T Consensus 596 a~~~~~~~~ 604 (608)
T PF10345_consen 596 AEEARQQLD 604 (608)
T ss_pred HHHHHHHHH
Confidence 766655544
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.74 E-value=0.057 Score=56.68 Aligned_cols=128 Identities=9% Similarity=0.028 Sum_probs=104.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002729 7 HQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLA 86 (887)
Q Consensus 7 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 86 (887)
......|+...|-+-+..++...|.++......+.+...+|+|+.+...+..+-+.-.....+...+.......|++++|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 45567899999998888999999999999999999999999999999888766555444455666677788889999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 002729 87 IRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLL 134 (887)
Q Consensus 87 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 134 (887)
...-.-++...-.+++....-+-.....|-++++...+++.+.++|..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 999888887766667776666666777888999999999999888653
No 340
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.74 E-value=0.0037 Score=66.23 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=68.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 002729 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (887)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (887)
+.....+..+.++-++...++++++|+.+.+|..++.- ......+|.++|+++++..... ..........|..-
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~----lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS----LGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh----hchhhhhhcccchh
Confidence 33444455556666666666666666666666555542 1223455555665555432110 00000000111100
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002729 119 EAAQCCRQALALNPL--LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT--FAIAWSNLAGLFMESGDLNRALQYYKE 194 (887)
Q Consensus 119 ~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (887)
+ ....... ...+...++.+..+.|+.++|++.++.+++.+|. +..+..++..++...+.+.++..++.+
T Consensus 248 e-------~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 248 E-------AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred h-------hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 0000001 1223345666666666666666666666655443 344556666666666666666666655
Q ss_pred H
Q 002729 195 A 195 (887)
Q Consensus 195 ~ 195 (887)
.
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 4
No 341
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.73 E-value=0.0005 Score=75.79 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=92.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCCh----hhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA----AGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
+.++|.||+...+++.+.+.-.+.-|+..+...||.+..+. .....|-.-|.+. + .+|....++.|..+.+. .
T Consensus 264 ~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-~-~~~g~v~~w~PQ~~iL~-h 340 (451)
T PLN02410 264 NSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-I-SGRGYIVKWAPQKEVLS-H 340 (451)
T ss_pred CcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-c-cCCeEEEccCCHHHHhC-C
Confidence 55999999999999999999999999999999999887431 1111133333332 3 47777779999888774 3
Q ss_pred cCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHHHhc-CCCCccc--cCCHHHHHHHHHHHhcCH
Q 002729 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLAT-GLGEEMI--VNSMKEYEERAVSLALDR 860 (887)
Q Consensus 788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~-g~~~~~~--~~~~~~y~~~a~~l~~d~ 860 (887)
..+..|+ ..+|-+|++||+++|||+|+++- +.+. -+..+... |+.- -+ .-+.++..+...++..|+
T Consensus 341 ~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~---na~~~~~~~~~G~-~~~~~~~~~~v~~av~~lm~~~ 411 (451)
T PLN02410 341 PAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSDQKV---NARYLECVWKIGI-QVEGDLDRGAVERAVKRLMVEE 411 (451)
T ss_pred CccCeee---ecCchhHHHHHHHcCCCEEeccccccCHH---HHHHHHHHhCeeE-EeCCcccHHHHHHHHHHHHcCC
Confidence 4466676 57788999999999999999873 3222 11222211 3321 11 125667655555666664
No 342
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.73 E-value=0.029 Score=66.60 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=79.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCc---hhHHHHHHHHHHhc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLR---TDNLLLLGAIYYQL----H---DYDMCIARNEEALRLEPRFAECYGNMA 74 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 74 (887)
.-.+++..+.|++|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++. ...|.-+--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 3467888899999999999999888854 56778888776654 2 467788888764 34566677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002729 75 NAWKEKGDIDLAIRYYLVAIELRPNFADAWS 105 (887)
Q Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (887)
.+|.+.|++++-+++|.-+++..|+++..-.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 9999999999999999999999988776443
No 343
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.13 Score=56.62 Aligned_cols=241 Identities=17% Similarity=0.050 Sum_probs=141.4
Q ss_pred HhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 26 YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR--------FAECYGNMANAWKEKGDIDLAIRYYLVAIELR 97 (887)
Q Consensus 26 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 97 (887)
++.+| ++..|..++......-.++.|...|-+.-...-- -..--...+.+-.--|++++|.+.|-.+-..+
T Consensus 686 iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 686 IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 34455 6888888888888877777777777654221100 00011234444455678888888875543221
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHH
Q 002729 98 PNFADAWSNLASAYMRKGRLNEAAQCCRQALALN--PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNL 175 (887)
Q Consensus 98 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 175 (887)
.-...+.+.|++-...++++..-.-. .....++..+|..+.....+++|.++|.+.-. .-++
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~ 828 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQ 828 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhH
Confidence 22345566777766666554421111 11234788888888888888888888876432 2345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHH
Q 002729 176 AGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMA 255 (887)
Q Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A 255 (887)
+.+++...++++-..+ ...-|++...+-.++.++...|.-++|.+.|-+.- .|.. ....+...++|.+|
T Consensus 829 ~ecly~le~f~~LE~l----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka-----Av~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVL----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA-----AVHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhhhHHHH----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH-----HHHHHHHHHHHHHH
Confidence 6667776666654433 33456777788888888888888888888776532 1221 12334556677777
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 256 ILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQC 296 (887)
Q Consensus 256 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (887)
.++.++.. -|.-.......+.-+...++..+|++..+++
T Consensus 898 velaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 898 VELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 77665432 1222222223334445556666666666654
No 344
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.70 E-value=0.016 Score=64.45 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=74.3
Q ss_pred CChHHHHHHHHHHHhhCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHH
Q 002729 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRF----LEAYNNLGNALKDVGRVDEAIQ 291 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~ 291 (887)
...+.|.++++...+..|+ .......|.++...|+.++|++.+++++.....- .-.++.++.++.-+.+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3456667777777777776 4455566667777777777777777666322211 1246667777777777777777
Q ss_pred HHHHHHhcCCCChH-HHHhHHHHHHHcCCh-------hHHHHHHHHHHhcc
Q 002729 292 CYNQCLSLQPSHPQ-ALTNLGNIYMEWNML-------PAAASYYKATLAVT 334 (887)
Q Consensus 292 ~~~~al~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~ 334 (887)
++.+..+.+.-+.. ..+..|.++...++. ++|.++|.++-...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 77777765544332 334556666677776 77777777665543
No 345
>PLN02670 transferase, transferring glycosyl groups
Probab=97.69 E-value=0.00053 Score=75.69 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=93.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh----HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
..++|.||+....++++.++-.+.-|...|...||.+..+... ...+-+-|.+. +....+++.++.|..+.|. .
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~-~~~rG~vv~~W~PQ~~IL~-H 355 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEER-VKGRGMIHVGWVPQVKILS-H 355 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHh-ccCCCeEEeCcCCHHHHhc-C
Confidence 4599999999999999999999999999999999988743211 11222222222 1112278889999888774 2
Q ss_pred cCCcEEecCCCCCCchhHHHHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCcccc-------CCHHHHHHHHHHHhc
Q 002729 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIV-------NSMKEYEERAVSLAL 858 (887)
Q Consensus 788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~-------~~~~~y~~~a~~l~~ 858 (887)
..+..|+ ...|-+|++||+++|||+|+++ ++.+. -+..+...|+.- -+. -+.++..+...++..
T Consensus 356 ~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~---Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~ 428 (472)
T PLN02670 356 ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQGL---NTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMV 428 (472)
T ss_pred cccceee---ecCCcchHHHHHHcCCCEEeCcchhccHH---HHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhc
Confidence 4455575 5788999999999999999997 33322 222334456543 231 256676666666666
Q ss_pred CH
Q 002729 859 DR 860 (887)
Q Consensus 859 d~ 860 (887)
|+
T Consensus 429 ~~ 430 (472)
T PLN02670 429 DD 430 (472)
T ss_pred Cc
Confidence 64
No 346
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00031 Score=66.53 Aligned_cols=92 Identities=22% Similarity=0.241 Sum_probs=57.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH
Q 002729 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN 118 (887)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 118 (887)
-|..++....|..|+..|.+++.++|..+..|.+.+.++++..+++.+.....++++++|+.+...+.+|.+......++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 34555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHh
Q 002729 119 EAAQCCRQALAL 130 (887)
Q Consensus 119 ~A~~~~~~~l~~ 130 (887)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 666666666443
No 347
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=0.00095 Score=69.74 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=156.1
Q ss_pred HHHHHHHHHhCCCeEEEecCCcCCCCchhhhhcCCCceEEe-----------c--cccCCCCCCCcccEEEecCccCCCC
Q 002729 601 SDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVS-----------Y--MGFPGTTGASYIDYLVTDEFVSPLR 667 (887)
Q Consensus 601 ~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~-----------~--~g~~~t~g~~~~d~~~~d~~~~p~~ 667 (887)
...+-+-++.-++|++|-..+--=.|.+.-..++-+|+.+. | ++...-.-+..+|.+++-.-.
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~---- 187 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEE---- 187 (419)
T ss_pred hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHH----
Confidence 55678888899999999887666666666667788888764 1 222222234667888773211
Q ss_pred cCCCCccceeecCCcc--ccCCCccccccCCCCC---CCCCCCCCCCCCCcEEEEecCCCCCCCHH-HHHHHHHHHhhcC
Q 002729 668 YAHIYSEKLVHVPHCY--FVNDYKQKNMDVLDPN---CQPKRSDYGLPEDKFIFACFNQLYKMDPE-IFNTWCNILRRVP 741 (887)
Q Consensus 668 ~~~~~~e~~~~lp~~~--~~~~~~~~~~~~~~~~---~~~~r~~~~l~~~~~~~~~~~~~~k~~~~-~~~~~~~il~~~p 741 (887)
..|+...|=-.- .+..-+....+ ++.. ....|..++.+...++++|. ..--++ .++++.+++++.|
T Consensus 188 ----D~~Rf~~LGa~~v~v~GNlKfd~~~-~~~~~~~~~~~r~~l~~~r~v~iaaST---H~GEeei~l~~~~~l~~~~~ 259 (419)
T COG1519 188 ----DAQRFRSLGAKPVVVTGNLKFDIEP-PPQLAAELAALRRQLGGHRPVWVAAST---HEGEEEIILDAHQALKKQFP 259 (419)
T ss_pred ----HHHHHHhcCCcceEEecceeecCCC-ChhhHHHHHHHHHhcCCCCceEEEecC---CCchHHHHHHHHHHHHhhCC
Confidence 123333321110 11111110000 0000 01256666666555566665 333344 8899999999999
Q ss_pred CceEEEecCChhhHHHHHHHHHHcCCCC------------CcEEEcCCCCcHHHHHhccCCcEEecC--CCCCCchhHHH
Q 002729 742 NSALWLLRFPAAGEMRLRAYAVAQGVQP------------DQIIFTDVAMKQEHIRRSSLADLFLDT--PLCNAHTTGTD 807 (887)
Q Consensus 742 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~------------~r~~~~~~~~~~~~~~~~~~~d~~ld~--~~~~g~~t~~e 807 (887)
|..|+++--.|.--..+.+.+...|+.- ..|.+... ..|...+|..+||+.=- |--.||--.+|
T Consensus 260 ~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt--mGEL~l~y~~adiAFVGGSlv~~GGHN~LE 337 (419)
T COG1519 260 NLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT--MGELGLLYGIADIAFVGGSLVPIGGHNPLE 337 (419)
T ss_pred CceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec--HhHHHHHHhhccEEEECCcccCCCCCChhh
Confidence 9999988766664556777777776531 13333322 35678889999998743 33377777899
Q ss_pred HHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc
Q 002729 808 ILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL-DRQKLQALTNKLKSVR 874 (887)
Q Consensus 808 al~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~ 874 (887)
++++|+|||+=+-..--+-....++.+=|. +++++ ++.+..++.+.. |++.+.++.+...+..
T Consensus 338 pa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~---~~v~~-~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 338 PAAFGTPVIFGPYTFNFSDIAERLLQAGAG---LQVED-ADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred HHHcCCCEEeCCccccHHHHHHHHHhcCCe---EEECC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999855444333333344433233 56677 777777777775 6999998877766543
No 348
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0055 Score=59.13 Aligned_cols=166 Identities=17% Similarity=0.186 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChH-HHHHHHHHH
Q 002729 50 DMCIARNEEALRLEPRFAECYGNMANAWKEKG-DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLN-EAAQCCRQA 127 (887)
Q Consensus 50 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~~ 127 (887)
..|+++-+.++..+|.+..+|...-.++...+ +..+-++++..+++.+|++-++|...-.+....|++. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 33444444555555555555544444443332 3445555555666666666666555555555555555 555555566
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHhhCCC
Q 002729 128 LALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFME-SG-----DLNRALQYYKEAVKLKPT 201 (887)
Q Consensus 128 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~~l~~~~~ 201 (887)
+..+.++..+|...-.+...-+.++.-+.+..++++.+-.+-.+|+..--+... .| ..+.-+.+..+.+...|+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 655555555555555555555556665555555555554444444432211111 11 122334455555566666
Q ss_pred CHHHHHHHHHHHHH
Q 002729 202 FPDAYLNLGNVYKA 215 (887)
Q Consensus 202 ~~~~~~~l~~~~~~ 215 (887)
+..+|+.|.-++..
T Consensus 220 NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 220 NESAWNYLKGLLEL 233 (318)
T ss_pred CccHHHHHHHHHHh
Confidence 66666665555554
No 349
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0025 Score=63.18 Aligned_cols=161 Identities=18% Similarity=0.131 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF-ADAWSNLASAY 111 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 111 (887)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-...... ..........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 34455566667777777777777777777777777777777777777777777777776644332221 11111122333
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHcCCHHHHH
Q 002729 112 MRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ--PTFAIAWSNLAGLFMESGDLNRAL 189 (887)
Q Consensus 112 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~ 189 (887)
.+.....+.. .+++.+..+|++.++.+.++..+...|+.++|.+.+-..++.+ -++..+...+..++...|.-+.+.
T Consensus 214 ~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 3333333322 2344456678888888888888888888888888777777664 334556666667776666555444
Q ss_pred HHHHH
Q 002729 190 QYYKE 194 (887)
Q Consensus 190 ~~~~~ 194 (887)
..+++
T Consensus 293 ~~~RR 297 (304)
T COG3118 293 LAYRR 297 (304)
T ss_pred HHHHH
Confidence 44443
No 350
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.65 E-value=0.015 Score=61.03 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hcCCCcHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRL----EPRFAECYGNMANAWKE---KGDIDLAIRYYLVAI-ELRPNFADAW 104 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~ 104 (887)
++....+-.+|....+|+.-+++.+.+-.. .++.....+..|.++.+ .|+.++|+..+..++ ...+.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 344444555555555666555555555443 22344455555555555 556666666655532 2334455555
Q ss_pred HHHHHHHHHc---------CChHHHHHHHHHHHHhC
Q 002729 105 SNLASAYMRK---------GRLNEAAQCCRQALALN 131 (887)
Q Consensus 105 ~~la~~~~~~---------g~~~~A~~~~~~~l~~~ 131 (887)
-.+|.+|... ...++|+..|.++.+.+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 5555555321 12444555555555444
No 351
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00087 Score=63.65 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--------hCCCc----------hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYE--------RNPLR----------TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR 65 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 65 (887)
+.|+.+++.|+|.+|...|..++. ..|.+ ...+.+..+|++..|+|-++++....++..+|.
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 568889999999999998888753 23433 234566777777777777888888777777777
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002729 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF 100 (887)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (887)
+..+++..|.+....-+.++|...|.++++++|.-
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 77788877777777777777777777777777763
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.39 Score=60.92 Aligned_cols=385 Identities=15% Similarity=0.103 Sum_probs=209.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002729 38 LLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR 113 (887)
Q Consensus 38 ~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 113 (887)
.++.+-++.+.|..|+-++++- ...+. ....++.+-.+|...++++.-...... ...+|+ ..........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHh
Confidence 6788889999999999999985 22222 123444455589999999887766653 122232 4455566778
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHcCCHHHHHHHH
Q 002729 114 KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLA-GLFMESGDLNRALQYY 192 (887)
Q Consensus 114 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~~~A~~~~ 192 (887)
.|++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|+.++ .+..+.++++.-.++.
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 899999999999999999998888888888888889999888877776665555555555543 3446677777666554
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCChHHHH--HHHHHHHhh--CC--------C-hhHHhhHHHHHHHcCChHHHHHHH
Q 002729 193 KEAVKLKPTFPDAYLNLGNVYKALGMPQEAI--MCYQRAVQT--RP--------N-AIAFGNLASTYYERGQADMAILYY 259 (887)
Q Consensus 193 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~~~~~--~p--------~-~~~~~~la~~~~~~g~~~~A~~~~ 259 (887)
. ..+-.+..+.. +|.+.....+-+.-. +..+.+.+. .| + ...|..+...+... +.+...+.+
T Consensus 1542 ~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l 1616 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEEL 1616 (2382)
T ss_pred h---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 4 11112212211 444444433222111 111111110 00 0 11111111111110 111111111
Q ss_pred HHHHhcCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cC----CCChHHHHhHHHHHHHcCChhHHHHHH
Q 002729 260 KQAIGCDPR-----FLEAYNNLGNALKDVGRVDEAIQCYNQCLS---LQ----PSHPQALTNLGNIYMEWNMLPAAASYY 327 (887)
Q Consensus 260 ~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~ 327 (887)
.+ ..++ +.+-|.+....-....+..+-+-.+++..- .+ ..-.+.|...+++....|+++.|...+
T Consensus 1617 ~~---~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nal 1693 (2382)
T KOG0890|consen 1617 KK---VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNAL 1693 (2382)
T ss_pred hc---cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 11 1111 111222222211111223333333333221 12 223567777777777777777777777
Q ss_pred HHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcC-CC----------C------HHHHHHHHHHHHHcCCH--
Q 002729 328 KATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRID-PL----------A------ADGLVNRGNTYKEIGRV-- 388 (887)
Q Consensus 328 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~l~~~~~~~g~~-- 388 (887)
-++.+.. -+.++...|..+.+.|+-..|+..+++.++.+ |+ . ..+...++.-....|++
T Consensus 1694 l~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1694 LNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred Hhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence 7666655 45666777777777777777777777777543 21 1 01233333444444442
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHH------------hCCCHHH---HHHHHHHHHHcCCC
Q 002729 389 TDAIQDYIRAITIRPTMAEAHANLASAYK------------DSGHVEA---AIKSYKQALLLRPD 438 (887)
Q Consensus 389 ~~A~~~~~~al~~~p~~~~~~~~la~~~~------------~~g~~~~---A~~~~~~al~~~p~ 438 (887)
++-++.|+.+.+..|....-++.+|..|. +.|++.. ++..|.+++..+..
T Consensus 1772 ~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~ 1836 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQ 1836 (2382)
T ss_pred HHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcch
Confidence 34566777777777766555666654332 3444444 55555666665543
No 353
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.64 E-value=0.0001 Score=61.85 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=58.1
Q ss_pred EEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002729 792 LFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKL 870 (887)
Q Consensus 792 ~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~~~ 870 (887)
|+|.|...+| +...+|+|++|+|||+-.-..+..-. .-|... +.++|.++.+++...+.+|++.+++++++.
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~------~~~~~~-~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIF------EDGEHI-ITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHc------CCCCeE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3566655556 78899999999999986553333211 114334 566899999999999999999999999999
Q ss_pred Hhhcc
Q 002729 871 KSVRL 875 (887)
Q Consensus 871 ~~~~~ 875 (887)
++...
T Consensus 74 ~~~v~ 78 (92)
T PF13524_consen 74 RERVL 78 (92)
T ss_pred HHHHH
Confidence 88764
No 354
>PLN02562 UDP-glycosyltransferase
Probab=97.63 E-value=0.0012 Score=72.92 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=92.9
Q ss_pred CcEEEEecCCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729 712 DKFIFACFNQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (887)
Q Consensus 712 ~~~~~~~~~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~ 790 (887)
+.++|.||+... .+.++.++.....++..+.-.||.++.+.. ..+.+-+.+. + ++|+.+.++.|+.+.+.- ..+
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~--~~l~~~~~~~-~-~~~~~v~~w~PQ~~iL~h-~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR--EGLPPGYVER-V-SKQGKVVSWAPQLEVLKH-QAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch--hhCCHHHHHH-h-ccCEEEEecCCHHHHhCC-Ccc
Confidence 348999999865 789999999999999999988887753211 1121112211 2 478888899998887742 334
Q ss_pred cEEecCCCCCCchhHHHHHHhCCceeeec--ccch--hhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHH
Q 002729 791 DLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKM--ATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQAL 866 (887)
Q Consensus 791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~--~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~ 866 (887)
-.|+ ..+|-+|++||+++|||+|+++ ++.+ +.|+.. .+|+.=.+-.-+.++..+...++..|++.+++.
T Consensus 348 ~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~----~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~a 420 (448)
T PLN02562 348 GCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVD----VWKIGVRISGFGQKEVEEGLRKVMEDSGMGERL 420 (448)
T ss_pred ceEE---ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHH----HhCceeEeCCCCHHHHHHHHHHHhCCHHHHHHH
Confidence 4565 5778999999999999999886 3333 222221 123322111236677555555666787766654
Q ss_pred H
Q 002729 867 T 867 (887)
Q Consensus 867 ~ 867 (887)
+
T Consensus 421 ~ 421 (448)
T PLN02562 421 M 421 (448)
T ss_pred H
Confidence 4
No 355
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.63 E-value=0.00013 Score=50.96 Aligned_cols=41 Identities=39% Similarity=0.465 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (887)
.++..+|.+|...|++++|++.|+++++.+|+++.++..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555666666666666666666666666666666655543
No 356
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.62 E-value=0.00081 Score=72.19 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccc----hhhhhHHHHHHhcCCCCccccC---CHHHHHHHHH
Q 002729 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEK----MATRVAGSLCLATGLGEEMIVN---SMKEYEERAV 854 (887)
Q Consensus 782 ~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~----~~~r~~~~~l~~~g~~~~~~~~---~~~~y~~~a~ 854 (887)
+...+|..+|+++ .-+|++|+.|++++|+|.|..+-.. .....-+..+...|... .+.+ +.+...+...
T Consensus 245 ~m~~~~~~adlvI---sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~~l~ 320 (352)
T PRK12446 245 ELPDILAITDFVI---SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIKHVE 320 (352)
T ss_pred hHHHHHHhCCEEE---ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHHHHH
Confidence 4556789999997 4568999999999999999886432 23445566788888876 4432 5678888888
Q ss_pred HHhcCHHHHHH
Q 002729 855 SLALDRQKLQA 865 (887)
Q Consensus 855 ~l~~d~~~~~~ 865 (887)
.+.+|++.+++
T Consensus 321 ~ll~~~~~~~~ 331 (352)
T PRK12446 321 ELSHNNEKYKT 331 (352)
T ss_pred HHHcCHHHHHH
Confidence 88889877654
No 357
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.62 E-value=0.00075 Score=71.61 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=103.6
Q ss_pred CCCCCCCCCCcEEEEe--cCCC---CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLPEDKFIFAC--FNQL---YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~--~~~~---~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.|..+ ++.+..+++- .+|. .++.|.++++-.++.++.|+.++++...+......+.+.....+.+.. +++..
T Consensus 175 ~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~-~~~~~- 251 (373)
T PF02684_consen 175 AREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVS-IVIIE- 251 (373)
T ss_pred HHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCe-EEEcC-
Confidence 34445 7666655443 3333 366799999999999999999998876665544556666666655322 33321
Q ss_pred CCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceee-ecccchhhhhHHHHH--HhcCCCC---------cccc--
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMIT-LPLEKMATRVAGSLC--LATGLGE---------EMIV-- 843 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt-~~g~~~~~r~~~~~l--~~~g~~~---------~~~~-- 843 (887)
.+-...++.+|++| -.+||.|+|+.-+|+|.|. -....+.-.++--++ .-.||+- |++-
T Consensus 252 ---~~~~~~m~~ad~al----~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~ 324 (373)
T PF02684_consen 252 ---GESYDAMAAADAAL----AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQED 324 (373)
T ss_pred ---CchHHHHHhCcchh----hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhccc
Confidence 12345678899998 7789999999999999554 454444444443332 2235544 1332
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 002729 844 NSMKEYEERAVSLALDRQKLQALTNKLKSV 873 (887)
Q Consensus 844 ~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~ 873 (887)
.+++...+.+..+..|.+.+...+...+..
T Consensus 325 ~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~ 354 (373)
T PF02684_consen 325 ATPENIAAELLELLENPEKRKKQKELFREI 354 (373)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 367887888888999998766655555443
No 358
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.61 E-value=0.00092 Score=74.83 Aligned_cols=103 Identities=21% Similarity=0.279 Sum_probs=75.7
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-----------h-HHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------G-EMRLRAYAVAQGVQPDQIIFTDVAM 779 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~-~~~l~~~~~~~g~~~~r~~~~~~~~ 779 (887)
+.++|.||+.....+++.++..+.-++..+.-.||.++.+.. . ...+-.-+.+. + .+|+.+.++.|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r-~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDR-T-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHH-h-ccCceEEeeCC
Confidence 458999999999999999999999999999888898764210 0 01111122211 2 46777789999
Q ss_pred cHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 780 ~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g 820 (887)
..+.|. ...+..|+ ..+|-+|++||+++|||+|+++-
T Consensus 352 Q~~iL~-H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~ 388 (481)
T PLN02554 352 QVAVLA-KPAIGGFV---THCGWNSILESLWFGVPMAAWPL 388 (481)
T ss_pred HHHHhC-CcccCccc---ccCccchHHHHHHcCCCEEecCc
Confidence 887774 36677775 57778999999999999999873
No 359
>PLN00414 glycosyltransferase family protein
Probab=97.61 E-value=0.00092 Score=73.62 Aligned_cols=156 Identities=10% Similarity=0.083 Sum_probs=92.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~ 788 (887)
+.++|.||+....++.+-+.-.+.=|...-.-.||++..+.. ....+-+-|.+. +....+++.++.|..+.+. ..
T Consensus 252 ~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r-~~~~g~vv~~w~PQ~~vL~-h~ 329 (446)
T PLN00414 252 GSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEER-VKGRGIVWEGWVEQPLILS-HP 329 (446)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHH-hcCCCeEEeccCCHHHHhc-CC
Confidence 459999999999887554443333344444456788864211 011122222222 1112267789999888774 35
Q ss_pred CCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHHHhcCH-
Q 002729 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVSLALDR- 860 (887)
Q Consensus 789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~g~~~~~~~------~~~~~y~~~a~~l~~d~- 860 (887)
.++.|| ...|.+|++||+++|||+|+++--.= ....+.++ ..+|+.- -+. -+.++..+...++..|.
T Consensus 330 ~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~-~~~~~~~~~~~~~~i~~~v~~~m~~~~ 404 (446)
T PLN00414 330 SVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSV-KVQREDSGWFSKESLRDTVKSVMDKDS 404 (446)
T ss_pred ccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEE-EeccccCCccCHHHHHHHHHHHhcCCh
Confidence 567786 57889999999999999999974211 12223344 3455543 221 26667666666666553
Q ss_pred HHHHHHHHHHHhhc
Q 002729 861 QKLQALTNKLKSVR 874 (887)
Q Consensus 861 ~~~~~~~~~~~~~~ 874 (887)
+..+++|++.++..
T Consensus 405 e~g~~~r~~a~~~~ 418 (446)
T PLN00414 405 EIGNLVKRNHKKLK 418 (446)
T ss_pred hhHHHHHHHHHHHH
Confidence 55666776666543
No 360
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.61 E-value=0.00014 Score=50.91 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (887)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (887)
.++..+|..|...|++++|++.|+++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666665553
No 361
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.60 E-value=0.015 Score=64.86 Aligned_cols=120 Identities=12% Similarity=-0.005 Sum_probs=82.2
Q ss_pred cCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 002729 317 WNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPL----AADGLVNRGNTYKEIGRVTDAI 392 (887)
Q Consensus 317 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 392 (887)
....+.|.++++...+..|+........|.++...|+.++|++.|++++..... ..-.++.+++++.-+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 344556666666666667766666666677777777777777777766643221 1236677888888888888888
Q ss_pred HHHHHHHhcCCCc-HHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHcC
Q 002729 393 QDYIRAITIRPTM-AEAHANLASAYKDSGHV-------EAAIKSYKQALLLR 436 (887)
Q Consensus 393 ~~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 436 (887)
+.|.+..+.+.-. .-..+..|.++...|+. ++|.++|+++-...
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 8888888766543 33445567777778877 88888888876654
No 362
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.60 E-value=0.00089 Score=73.50 Aligned_cols=149 Identities=12% Similarity=0.202 Sum_probs=91.8
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
+.++|.||+....++++.++..+.-|...| .||.+..+.. ..+-+-+.+. +..+++.+.++.|..+.|. ...+.
T Consensus 264 ~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~~--~~lp~~~~~~-~~~~~~~i~~W~PQ~~iL~-H~~v~ 337 (449)
T PLN02173 264 GSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASEE--SKLPPGFLET-VDKDKSLVLKWSPQLQVLS-NKAIG 337 (449)
T ss_pred CceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccch--hcccchHHHh-hcCCceEEeCCCCHHHHhC-CCccc
Confidence 458999999999999999998888886666 6788763211 1121122221 2257788889999887774 34456
Q ss_pred EEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHH-hcCCCCcccc------CCHHHHHHHHHHHhcCHHHHH
Q 002729 792 LFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCL-ATGLGEEMIV------NSMKEYEERAVSLALDRQKLQ 864 (887)
Q Consensus 792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~g~~~~~~~------~~~~~y~~~a~~l~~d~~~~~ 864 (887)
.|| ...|.+|++||+++|||+|+++--.=.. .-+-++. .+|+.-.+-. -+.++..+...++..|.+ -+
T Consensus 338 ~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~-~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~ 412 (449)
T PLN02173 338 CFM---THCGWNSTMEGLSLGVPMVAMPQWTDQP-MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SK 412 (449)
T ss_pred eEE---ecCccchHHHHHHcCCCEEecCchhcch-HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HH
Confidence 775 5778999999999999999987321111 1122232 2133221110 156776666666666643 24
Q ss_pred HHHHHHH
Q 002729 865 ALTNKLK 871 (887)
Q Consensus 865 ~~~~~~~ 871 (887)
++|.+.+
T Consensus 413 ~~r~~a~ 419 (449)
T PLN02173 413 EMKENAG 419 (449)
T ss_pred HHHHHHH
Confidence 4554444
No 363
>PLN00164 glucosyltransferase; Provisional
Probab=97.60 E-value=0.00075 Score=75.26 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=93.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh----------hHHHHHHHHHHcCCCCCcEEEcCCCCcH
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----------GEMRLRAYAVAQGVQPDQIIFTDVAMKQ 781 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~----------~~~~l~~~~~~~g~~~~r~~~~~~~~~~ 781 (887)
..++|.||+....++.+.++..+.-|+..+.-.||.+..+.. ....+-+-+.+. +....+++.++.|..
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~~~g~~v~~w~PQ~ 350 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLER-TKGRGLVWPTWAPQK 350 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHH-hcCCCeEEeecCCHH
Confidence 448999999998898888998888999988888999874321 011121122211 111236778999988
Q ss_pred HHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCcccc--------CCHHHHHH
Q 002729 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIV--------NSMKEYEE 851 (887)
Q Consensus 782 ~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~--------~~~~~y~~ 851 (887)
+.|.- ..+-.|| ..+|-+|++||+++|||+|+++ ++.+.. +.-+...+|+.- .+. -+.++..+
T Consensus 351 ~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~ 423 (480)
T PLN00164 351 EILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHLN--AFELVADMGVAV-AMKVDRKRDNFVEAAELER 423 (480)
T ss_pred HHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchhH--HHHHHHHhCeEE-EeccccccCCcCcHHHHHH
Confidence 77742 3344565 5778899999999999999987 333322 111223345543 221 14566555
Q ss_pred HHHHHhcCHH-HHHHHHHHHHh
Q 002729 852 RAVSLALDRQ-KLQALTNKLKS 872 (887)
Q Consensus 852 ~a~~l~~d~~-~~~~~~~~~~~ 872 (887)
...++..|.+ ..+++|++.++
T Consensus 424 av~~vm~~~~~~~~~~r~~a~~ 445 (480)
T PLN00164 424 AVRSLMGGGEEEGRKAREKAAE 445 (480)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 5556666543 24445544443
No 364
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.59 E-value=0.00099 Score=74.05 Aligned_cols=103 Identities=17% Similarity=0.271 Sum_probs=76.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh---HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~ 788 (887)
..++|.||+.....+++.++-.++-|...+...||.++.+... ...+-.-+.+. +....+++.++.|..+.+. ..
T Consensus 283 ~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r-~~~~g~~v~~w~PQ~~vL~-h~ 360 (477)
T PLN02863 283 HKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDR-VAGRGLVIRGWAPQVAILS-HR 360 (477)
T ss_pred CceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHH-hccCCEEecCCCCHHHHhc-CC
Confidence 4489999999999999999988888999998889988743211 11122222211 1134578889999887774 34
Q ss_pred CCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (887)
Q Consensus 789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~ 819 (887)
.++.|+ ..+|-+|++||+++|||+|+++
T Consensus 361 ~v~~fv---tH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 361 AVGAFL---THCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CcCeEE---ecCCchHHHHHHHcCCCEEeCC
Confidence 588886 5788899999999999999986
No 365
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.59 E-value=0.00011 Score=77.00 Aligned_cols=103 Identities=23% Similarity=0.262 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 002729 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119 (887)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 119 (887)
+...+.-+.++.|+..|.++++++|+++..+-..+.++.+.+++..|+..+.++++.+|....+|...|.+....+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH
Q 002729 120 AAQCCRQALALNPLLVDAHSNLG 142 (887)
Q Consensus 120 A~~~~~~~l~~~p~~~~~~~~la 142 (887)
|...|++.....|+++.+...+.
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHH
Confidence 55555555555555554444333
No 366
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.59 E-value=0.027 Score=61.05 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhH
Q 002729 167 TFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP----TFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIA 238 (887)
Q Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~ 238 (887)
.....|...+.+..+.|+++.|...+.++...++ ..+.+....+..+...|+..+|+..++..++.... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3445666667777777777777777666665431 13456666667777777777777776666652111 000
Q ss_pred HhhHHHHHHH--cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChHHHHhH
Q 002729 239 FGNLASTYYE--RGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV------GRVDEAIQCYNQCLSLQPSHPQALTNL 310 (887)
Q Consensus 239 ~~~la~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l 310 (887)
...+...... ........... .......++..+|...... +..+++...|+++.+..|.....+..+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKE-----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred HHHHhhccccccccccccchhhh-----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 0000000000 00000000000 0001123445555555555 566666666666666666666666665
Q ss_pred HHHHHHcC-----------------ChhHHHHHHHHHHhccCC
Q 002729 311 GNIYMEWN-----------------MLPAAASYYKATLAVTTG 336 (887)
Q Consensus 311 ~~~~~~~g-----------------~~~~A~~~~~~~~~~~~~ 336 (887)
|..+.+.- -...|+..|-+++...++
T Consensus 299 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 299 ALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 55544221 123477777777777766
No 367
>PLN02764 glycosyltransferase family protein
Probab=97.59 E-value=0.0009 Score=73.24 Aligned_cols=155 Identities=9% Similarity=0.053 Sum_probs=95.1
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~ 788 (887)
+.++|.||+....++++-+.-.+.=|...-.-.+|++..+.. ....|-+-|.+. +...-+++.++.|..+.+. ..
T Consensus 257 ~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r-~~grG~v~~~W~PQ~~vL~-h~ 334 (453)
T PLN02764 257 DSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEER-VKGRGVVWGGWVQQPLILS-HP 334 (453)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhh-hccCCcEEeCCCCHHHHhc-Cc
Confidence 559999999999887776665555555555557888874221 011222222222 1112368889999988874 35
Q ss_pred CCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHH-HhcCCCCccc------cCCHHHHHHHHHHHhcCH-
Q 002729 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLC-LATGLGEEMI------VNSMKEYEERAVSLALDR- 860 (887)
Q Consensus 789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~g~~~~~~------~~~~~~y~~~a~~l~~d~- 860 (887)
.++.|+ ..+|.+|++||+++|||+|+++--.= ...-+..+ ..+|+.- -+ .-+.++..+...++..+.
T Consensus 335 ~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~D-Q~~na~~l~~~~g~gv-~~~~~~~~~~~~e~i~~av~~vm~~~~ 409 (453)
T PLN02764 335 SVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGD-QVLNTRLLSDELKVSV-EVAREETGWFSKESLRDAINSVMKRDS 409 (453)
T ss_pred ccCeEE---ecCCchHHHHHHHcCCCEEeCCcccc-hHHHHHHHHHHhceEE-EeccccCCccCHHHHHHHHHHHhcCCc
Confidence 577786 57889999999999999999874211 11112233 2334432 11 126677666666666664
Q ss_pred HHHHHHHHHHHhh
Q 002729 861 QKLQALTNKLKSV 873 (887)
Q Consensus 861 ~~~~~~~~~~~~~ 873 (887)
+..+++|.+.++-
T Consensus 410 ~~g~~~r~~a~~~ 422 (453)
T PLN02764 410 EIGNLVKKNHTKW 422 (453)
T ss_pred hhHHHHHHHHHHH
Confidence 5566677666654
No 368
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0013 Score=62.58 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=82.1
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLR--------IDPLAA----------DGLVNRGNTYKEIGRVTDAIQDYIRAITIR 402 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 402 (887)
+..-|+-+++.|+|.+|...|+.++. ..|..+ ..+.++..|+...|+|-++++.....+...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 33445555566666666666655543 234333 378889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHH
Q 002729 403 PTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATC 444 (887)
Q Consensus 403 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 444 (887)
|.+..+++..|.+....=+.++|.+.|.++++++|.-..+..
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 999999999999999999999999999999999997655543
No 369
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.57 E-value=0.0012 Score=72.88 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=91.2
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh------------------HHHHHHHHHHcCCCCCcEE
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG------------------EMRLRAYAVAQGVQPDQII 773 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~------------------~~~l~~~~~~~g~~~~r~~ 773 (887)
+.++|.||+....++.+.++-.+.-|...|...||.+..+... .+.+-+-|.+. +....++
T Consensus 263 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR-~~~rg~v 341 (481)
T PLN02992 263 ESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR-THDRGFV 341 (481)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH-hcCCCEE
Confidence 4599999999999999999999999999999999998532100 11121222221 2223488
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHH-HhcCCCCcccc-----CC
Q 002729 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLC-LATGLGEEMIV-----NS 845 (887)
Q Consensus 774 ~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l-~~~g~~~~~~~-----~~ 845 (887)
+.++.|+.+.+.- ..+..|+ ..+|.+|++||+++|||+|+++- +.+.. +..+ ..+|+.- .+. -+
T Consensus 342 v~~W~PQ~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n---a~~~~~~~g~gv-~~~~~~~~~~ 413 (481)
T PLN02992 342 VPSWAPQAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNMN---AALLSDELGIAV-RSDDPKEVIS 413 (481)
T ss_pred EeecCCHHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHHH---HHHHHHHhCeeE-EecCCCCccc
Confidence 8999998877742 3344464 57789999999999999999873 22211 1222 2445543 232 25
Q ss_pred HHHHHHHHHHHhcC
Q 002729 846 MKEYEERAVSLALD 859 (887)
Q Consensus 846 ~~~y~~~a~~l~~d 859 (887)
.++..+...++..+
T Consensus 414 ~~~l~~av~~vm~~ 427 (481)
T PLN02992 414 RSKIEALVRKVMVE 427 (481)
T ss_pred HHHHHHHHHHHhcC
Confidence 66666666676665
No 370
>PLN02208 glycosyltransferase family protein
Probab=97.54 E-value=0.0014 Score=72.02 Aligned_cols=153 Identities=10% Similarity=0.088 Sum_probs=93.8
Q ss_pred CCcEEEEecCCCCCCCHH-HHHHHHHH-HhhcCCceEEEecCChh---hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHH
Q 002729 711 EDKFIFACFNQLYKMDPE-IFNTWCNI-LRRVPNSALWLLRFPAA---GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR 785 (887)
Q Consensus 711 ~~~~~~~~~~~~~k~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~---~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~ 785 (887)
++.++|.||+...++.++ +.++...+ ....|- +|+...+.. ....+-+-|.+. +....+++.++.|..+.|.
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r-~~~~g~~v~~W~PQ~~iL~ 326 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEER-VKGRGVVWGGWVQQPLILD 326 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHH-HhcCCcEeeccCCHHHHhc
Confidence 356999999999988887 77766665 666775 676653211 011122222222 1124468889999988774
Q ss_pred hccCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHH-HhcCCCCcccc------CCHHHHHHHHHHH
Q 002729 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLC-LATGLGEEMIV------NSMKEYEERAVSL 856 (887)
Q Consensus 786 ~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l-~~~g~~~~~~~------~~~~~y~~~a~~l 856 (887)
...+..|+ ...|-++++||+++|||+|+++- +.+.. +.++ ..+|+.- -+- -+.++..+...++
T Consensus 327 -H~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~n---a~~~~~~~g~gv-~~~~~~~~~~~~~~l~~ai~~~ 398 (442)
T PLN02208 327 -HPSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVLF---TRLMTEEFEVSV-EVSREKTGWFSKESLSNAIKSV 398 (442)
T ss_pred -CCccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHHH---HHHHHHHhceeE-EeccccCCcCcHHHHHHHHHHH
Confidence 35566676 57788999999999999999873 33321 1222 2245543 221 2556655555555
Q ss_pred hcCH-HHHHHHHHHHHhhc
Q 002729 857 ALDR-QKLQALTNKLKSVR 874 (887)
Q Consensus 857 ~~d~-~~~~~~~~~~~~~~ 874 (887)
..|+ +..+++|++.++.+
T Consensus 399 m~~~~e~g~~~r~~~~~~~ 417 (442)
T PLN02208 399 MDKDSDLGKLVRSNHTKLK 417 (442)
T ss_pred hcCCchhHHHHHHHHHHHH
Confidence 5554 55667777666544
No 371
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.023 Score=54.99 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHH
Q 002729 15 YKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH-DYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDID-LAIRYYLV 92 (887)
Q Consensus 15 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~ 92 (887)
-..|+++-+.++..+|.+..+|...-.++..++ +..+-++++.+++..+|++...|...-.+....|+.. .-++..+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence 344444444444444444444444443333322 3344444444444445555444444444444444444 44444444
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q 002729 93 AIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAH 138 (887)
Q Consensus 93 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 138 (887)
++..+.++-.+|...--+...-+.++.-+.+..++++.+-.+-.+|
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred HHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 4444444444444444444444445554444444444443333333
No 372
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.53 E-value=0.0016 Score=72.56 Aligned_cols=96 Identities=19% Similarity=0.300 Sum_probs=71.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
..++|.||+......++.++....-|+..+.-.+|.+..+.. .+.+ +..+|+++.++.|..+.|. ...+.
T Consensus 274 ~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~~---~~~~------~~~~~~~v~~w~pQ~~iL~-h~~v~ 343 (459)
T PLN02448 274 GSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEAS---RLKE------ICGDMGLVVPWCDQLKVLC-HSSVG 343 (459)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCchh---hHhH------hccCCEEEeccCCHHHHhc-cCccc
Confidence 458999999988888999988888898888777875543211 1111 1246788889999888775 23444
Q ss_pred EEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729 792 LFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g 820 (887)
.|+ ..+|.+|++||+++|||+|+++-
T Consensus 344 ~fv---tHgG~nS~~eal~~GvP~l~~P~ 369 (459)
T PLN02448 344 GFW---THCGWNSTLEAVFAGVPMLTFPL 369 (459)
T ss_pred eEE---ecCchhHHHHHHHcCCCEEeccc
Confidence 575 57788999999999999999874
No 373
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.52 E-value=0.0011 Score=74.20 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=73.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh----HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG----EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
..++|.||+....+.++.++-.+.-|+..+...||.++.+... ...+-+-+.+. + .+|..+.++.|+.+.+. .
T Consensus 280 ~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er-~-~~rg~v~~w~PQ~~iL~-h 356 (475)
T PLN02167 280 SSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDR-V-MGRGLVCGWAPQVEILA-H 356 (475)
T ss_pred CceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHH-h-ccCeeeeccCCHHHHhc-C
Confidence 4589999999888888888888999999998889987643210 11121111111 2 25566779999887774 3
Q ss_pred cCCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (887)
Q Consensus 788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~ 819 (887)
..++.|| ..+|-+|++||+++|||+|+++
T Consensus 357 ~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P 385 (475)
T PLN02167 357 KAIGGFV---SHCGWNSVLESLWFGVPIATWP 385 (475)
T ss_pred cccCeEE---eeCCcccHHHHHHcCCCEEecc
Confidence 4467776 5777889999999999999986
No 374
>PLN03015 UDP-glucosyl transferase
Probab=97.51 E-value=0.0015 Score=71.72 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=75.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-----------hHHHHHHHHHHcCCCCCcEEEcCCCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-----------GEMRLRAYAVAQGVQPDQIIFTDVAMK 780 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~~~~l~~~~~~~g~~~~r~~~~~~~~~ 780 (887)
..++|.||+....++++.++-.+.-|...+...||.+..+.. ..+.+-+-|.+. +....+++.++.|.
T Consensus 267 ~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er-~~~rGl~v~~W~PQ 345 (470)
T PLN03015 267 RSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR-TRGVGLVVTQWAPQ 345 (470)
T ss_pred CCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHh-hccCceEEEecCCH
Confidence 459999999999999999999999999999999999863210 011111111111 11112678899999
Q ss_pred HHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729 781 QEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 781 ~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g 820 (887)
.+.+. ...+..|+ ...|-+|++||+++|||+|+++-
T Consensus 346 ~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P~ 381 (470)
T PLN03015 346 VEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWPL 381 (470)
T ss_pred HHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEeccc
Confidence 88875 35566675 57788999999999999999873
No 375
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.012 Score=61.71 Aligned_cols=165 Identities=18% Similarity=0.065 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh----CCChHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Q 002729 139 SNLGNLMKAQGLVQEAYSCYLEALRI----QPTFAIAWSNLAGLFME---SGDLNRALQYYKE-AVKLKPTFPDAYLNLG 210 (887)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~~~~~~~~~~l~ 210 (887)
..+-..|....+|+.-+++.+.+-.. -++...+...+|.++.+ .|+.++|+..+.. .....+.+++++..+|
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 33334444444444444444444333 22233333444444444 4555555555544 2233334444454444
Q ss_pred HHHHHc---------CChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHH--------h----cCCCc
Q 002729 211 NVYKAL---------GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI--------G----CDPRF 269 (887)
Q Consensus 211 ~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~----~~p~~ 269 (887)
.+|... ...++|+..|.++.+..|+...-.+++.++...|...+...-+++.. + ..-.+
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 444321 12455666666666666554444455555544443222221111111 0 01122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 002729 270 LEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH 303 (887)
Q Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (887)
...+..++.+..-.|++++|.+.++++++..|..
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2334455555666677777777777777665544
No 376
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.50 E-value=0.0012 Score=75.42 Aligned_cols=138 Identities=12% Similarity=0.278 Sum_probs=90.9
Q ss_pred CCcEEEEecCCCCCCCH-HHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729 711 EDKFIFACFNQLYKMDP-EIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (887)
Q Consensus 711 ~~~~~~~~~~~~~k~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 789 (887)
++.++|.||+...+..| +..+...+.+++.|...||-...... .. + ++.+.+..++|..+.|+ ...
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~--~~---------l-~~n~~~~~W~PQ~~lL~-hp~ 341 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGEPP--EN---------L-PKNVLIVKWLPQNDLLA-HPR 341 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCSHG--CH---------H-HTTEEEESS--HHHHHT-STT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccccc--cc---------c-cceEEEeccccchhhhh-ccc
Confidence 35689999999876444 44888899999999988887654221 11 2 46788999999888875 556
Q ss_pred CcEEecCCCCCCchhHHHHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHH
Q 002729 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQ 864 (887)
Q Consensus 790 ~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~ 864 (887)
+++|+ ..+|-+|+.||+++|||+|++| ||.+.. +..+...|... .+- -+.++..+...++..|+..++
T Consensus 342 v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~n---a~~~~~~G~g~-~l~~~~~~~~~l~~ai~~vl~~~~y~~ 414 (500)
T PF00201_consen 342 VKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPRN---AARVEEKGVGV-VLDKNDLTEEELRAAIREVLENPSYKE 414 (500)
T ss_dssp EEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHHH---HHHHHHTTSEE-EEGGGC-SHHHHHHHHHHHHHSHHHHH
T ss_pred ceeee---eccccchhhhhhhccCCccCCCCcccCCcc---ceEEEEEeeEE-EEEecCCcHHHHHHHHHHHHhhhHHHH
Confidence 78886 5777899999999999999987 343322 23355567644 222 267888888888888987666
Q ss_pred HHHH
Q 002729 865 ALTN 868 (887)
Q Consensus 865 ~~~~ 868 (887)
+.++
T Consensus 415 ~a~~ 418 (500)
T PF00201_consen 415 NAKR 418 (500)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 377
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.13 Score=56.61 Aligned_cols=78 Identities=21% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 205 AYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVG 284 (887)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 284 (887)
++.++|..+..+..+++|.++|.+.-.. .+.+.+++...++++-..+. ..-|++.+..-.++..+...|
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~~-------e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~~a~mf~svG 866 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGDT-------ENQIECLYRLELFGELEVLA----RTLPEDSELLPVMADMFTSVG 866 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch-------HhHHHHHHHHHhhhhHHHHH----HhcCcccchHHHHHHHHHhhc
Confidence 5555555555555555555555543221 12333444444443322222 222344444445555555555
Q ss_pred CHHHHHHHH
Q 002729 285 RVDEAIQCY 293 (887)
Q Consensus 285 ~~~~A~~~~ 293 (887)
.-++|.+.|
T Consensus 867 MC~qAV~a~ 875 (1189)
T KOG2041|consen 867 MCDQAVEAY 875 (1189)
T ss_pred hHHHHHHHH
Confidence 555555444
No 378
>PLN02207 UDP-glycosyltransferase
Probab=97.48 E-value=0.0014 Score=72.26 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=76.6
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh-hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA-GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~ 790 (887)
+.++|.||+....+..+.++..+.-+...+...||.++.+.. ..+.+-+-+.+. + .+|+.+.++.|+.+.+.- ..+
T Consensus 275 ~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-~-~~~g~i~~W~PQ~~IL~H-~~v 351 (468)
T PLN02207 275 ASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-V-SGRGMICGWSPQVEILAH-KAV 351 (468)
T ss_pred CcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-c-CCCeEEEEeCCHHHHhcc-ccc
Confidence 569999999999999999999999999999999998874221 011121222221 2 467777799999888753 456
Q ss_pred cEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729 791 DLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (887)
Q Consensus 791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~ 819 (887)
..|+ ...|-++++||+++|||+|+++
T Consensus 352 g~Fv---TH~GwnS~~Eai~~GVP~l~~P 377 (468)
T PLN02207 352 GGFV---SHCGWNSIVESLWFGVPIVTWP 377 (468)
T ss_pred ceee---ecCccccHHHHHHcCCCEEecC
Confidence 6675 5777889999999999999987
No 379
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.48 E-value=0.00012 Score=47.66 Aligned_cols=32 Identities=47% Similarity=0.662 Sum_probs=17.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHH
Q 002729 395 YIRAITIRPTMAEAHANLASAYKDSGHVEAAI 426 (887)
Q Consensus 395 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 426 (887)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 380
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.47 E-value=0.034 Score=60.28 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=88.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-CCC--ch
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQP----SHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-TGL--SA 339 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~ 339 (887)
......|...+.+..+.|+++.|...+.++....+ ..+.+....+.+....|+..+|+..++..+... ... ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34456777888888888888888888888776542 245677777888888888888888887777621 111 00
Q ss_pred hHhhHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002729 340 PFNNLAVIYKQ--QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEI------GRVTDAIQDYIRAITIRPTMAEAHAN 411 (887)
Q Consensus 340 ~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~ 411 (887)
....+...... ............ ......++..+|...... +..+++.+.|.++.+.+|+...+|+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred cHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 00000000000 000000000000 001134566667666666 78888888999999888888888888
Q ss_pred HHHHHHhC
Q 002729 412 LASAYKDS 419 (887)
Q Consensus 412 la~~~~~~ 419 (887)
+|..+.+.
T Consensus 298 ~a~~~~~~ 305 (352)
T PF02259_consen 298 WALFNDKL 305 (352)
T ss_pred HHHHHHHH
Confidence 88876654
No 381
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.47 E-value=0.0024 Score=75.46 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=106.2
Q ss_pred CcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCce--EEEe--cCC-----hhhHHHHHHHHH--------HcCCC-CCc
Q 002729 712 DKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSA--LWLL--RFP-----AAGEMRLRAYAV--------AQGVQ-PDQ 771 (887)
Q Consensus 712 ~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~--l~~~--~~~-----~~~~~~l~~~~~--------~~g~~-~~r 771 (887)
+..++.+..++ .|..+.-+.+|.++|+..|+-+ ++++ ..+ +. -+.++..+. ..|-. -.=
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~e-Y~~l~~~V~~~V~rIN~~fg~~~w~P 440 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPE-YQKLTSQVHEIVGRINGRFGTLTAVP 440 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHH-HHHHHHHHHHHHHHHhhhccCCCcce
Confidence 45678888887 4999999999999999999853 4444 221 22 233443332 23321 112
Q ss_pred EEEcC-CCCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHh-----CCceeeecccchhhhhHHH-HHHhcCCCCcccc
Q 002729 772 IIFTD-VAMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWA-----GLPMITLPLEKMATRVAGS-LCLATGLGEEMIV 843 (887)
Q Consensus 772 ~~~~~-~~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~-~l~~~g~~~~~~~ 843 (887)
|++.. .++.++++++|..+||+|.|.-..| ++++.|+++| |++|++ +-.|++ .| |-.. +++
T Consensus 441 v~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L---~~~A-llV 509 (934)
T PLN03064 441 IHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL---GAGA-ILV 509 (934)
T ss_pred EEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh---CCce-EEE
Confidence 55554 4788999999999999999988888 9999999999 677772 333332 22 3223 343
Q ss_pred --CCHHHHHHHHHHHhc-CHHHHHHHHHHHHhhccc
Q 002729 844 --NSMKEYEERAVSLAL-DRQKLQALTNKLKSVRLT 876 (887)
Q Consensus 844 --~~~~~y~~~a~~l~~-d~~~~~~~~~~~~~~~~~ 876 (887)
.|.++..+...+.++ +++.+++..+++++....
T Consensus 510 NP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~ 545 (934)
T PLN03064 510 NPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTT 545 (934)
T ss_pred CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc
Confidence 688888887777777 888888888888877543
No 382
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.014 Score=57.95 Aligned_cols=161 Identities=17% Similarity=0.101 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 002729 67 AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLV-DAHSNLGNLM 145 (887)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~ 145 (887)
.+.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+...-....... .........+
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 344455566667788888888888888888888888888888888888888888777765432222111 1111122333
Q ss_pred HHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCChHHHH
Q 002729 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP--TFPDAYLNLGNVYKALGMPQEAI 223 (887)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 223 (887)
.+.....+. ..+++.+..+|++..+-+.++..+...|+.++|.+.+-.+++.+. .+..+...+..++...|..+.+.
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 333333322 224445566788888888888888888888888888877777643 34456677777777777555554
Q ss_pred HHHHH
Q 002729 224 MCYQR 228 (887)
Q Consensus 224 ~~~~~ 228 (887)
..+++
T Consensus 293 ~~~RR 297 (304)
T COG3118 293 LAYRR 297 (304)
T ss_pred HHHHH
Confidence 44443
No 383
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.46 E-value=0.21 Score=52.60 Aligned_cols=417 Identities=11% Similarity=0.006 Sum_probs=226.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 35 NLLLLGAIYYQLHDYDMCIARNEEALRLEPRFA-----ECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLAS 109 (887)
Q Consensus 35 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 109 (887)
.+...|.++.+++++.+|.++|.++.+...+.+ +.+..+....+-+++.+.-.......-+..|+.+....-.+.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 455678889999999999999999987655442 344444444455667777666666666778888888888889
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-C----ChH
Q 002729 110 AYMRKGRLNEAAQCCRQALALNPL---------------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQ-P----TFA 169 (887)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p----~~~ 169 (887)
..++.+.+.+|++.+......-.. +...-...+.++...|++.++...+++.+..- + -+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 999999999999988776544111 11122346788899999999999999887642 2 344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHc-----C----C------------------hHH
Q 002729 170 IAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKAL-----G----M------------------PQE 221 (887)
Q Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~-----g----~------------------~~~ 221 (887)
..+..+...+.+ .+|-++.+....+ ..-|+.++..|.+. . . +++
T Consensus 168 d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 168 DMYDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 444443322211 1111111111000 00111111111111 0 0 001
Q ss_pred HHHHHHHHHh------hCCC-hhHHhhHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHH
Q 002729 222 AIMCYQRAVQ------TRPN-AIAFGNLASTYYERGQADMAILYYKQAIGC-----DPRFLEAYNNLGNALKDVGRVDEA 289 (887)
Q Consensus 222 A~~~~~~~~~------~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A 289 (887)
-+..+-++++ .+|+ ......+..-.. .+.+++....+..... ...-......+-....+.++..+|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~--~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFM--SDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHh--cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1111111111 1222 111111111111 1334444444333221 111223444445556677888889
Q ss_pred HHHHHHHHhcCCCChHHHHh------HHHHHH-HcCChh---HHHHHHHHHHhccCCCc---hhHhhHHHHHHHcCC-HH
Q 002729 290 IQCYNQCLSLQPSHPQALTN------LGNIYM-EWNMLP---AAASYYKATLAVTTGLS---APFNNLAVIYKQQGN-YA 355 (887)
Q Consensus 290 ~~~~~~al~~~p~~~~~~~~------l~~~~~-~~g~~~---~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~-~~ 355 (887)
.+++.-....+|+....... +-++.+ .-..+. .=+.+++..-..+-+.. .-...-|.-+.+.|+ -+
T Consensus 318 ~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 318 KQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccH
Confidence 88888887788876421111 111111 111111 11222333222222221 123334555666676 88
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHh---------cCC---CcHHHHHHHHH--HHHhC
Q 002729 356 DAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQ--DYIRAIT---------IRP---TMAEAHANLAS--AYKDS 419 (887)
Q Consensus 356 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~al~---------~~p---~~~~~~~~la~--~~~~~ 419 (887)
+|+.+++.+++..+.+...-+..-... ...|.+|+. .+-+.+. +.| .+.+..+.|+. .+...
T Consensus 398 kalnLLk~il~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysq 475 (549)
T PF07079_consen 398 KALNLLKLILQFTNYDIECENIVFLFV--KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQ 475 (549)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhc
Confidence 999999999999887765433221111 112222221 1111111 122 23455555554 57789
Q ss_pred CCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHH
Q 002729 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFS 464 (887)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 464 (887)
|++.++.-+-.-..++.| ++.++..++.++....++++|.+.+.
T Consensus 476 gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999 78888888888888777777766554
No 384
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.45 E-value=0.0002 Score=75.19 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=90.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHH
Q 002729 344 LAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVE 423 (887)
Q Consensus 344 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 423 (887)
-+.-...-+.++.|+..|.++++++|+++..+.+++..+.+.+++..|+..+.++++.+|....+|+..|.++.+.+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCChHHHHH
Q 002729 424 AAIKSYKQALLLRPDFPEATCN 445 (887)
Q Consensus 424 ~A~~~~~~al~~~p~~~~~~~~ 445 (887)
+|...|++...+.|+++.+.-.
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999998876544
No 385
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.45 E-value=0.0026 Score=71.49 Aligned_cols=139 Identities=14% Similarity=0.231 Sum_probs=96.3
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccC
Q 002729 713 KFIFACFNQLY---KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSL 789 (887)
Q Consensus 713 ~~~~~~~~~~~---k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~ 789 (887)
.++|.+|+... +..++.++...+.+++.|.-.+|-.+.... . .++ +++|.+.+++|..+.++ ...
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-~---------~~~-p~Nv~i~~w~Pq~~lL~-hp~ 364 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-A---------INL-PANVLTQKWFPQRAVLK-HKN 364 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-c---------ccC-CCceEEecCCCHHHHhc-CCC
Confidence 47888888765 457889999888888999755554432111 0 244 68999999999887773 366
Q ss_pred CcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc---CCHHHHHHHHHHHhcCHHHHHHH
Q 002729 790 ADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV---NSMKEYEERAVSLALDRQKLQAL 866 (887)
Q Consensus 790 ~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~---~~~~~y~~~a~~l~~d~~~~~~~ 866 (887)
+++|+ ..+|..|+.||++.|||+|.++--.=.-+ -+..+...|... .+- -+.++..+...++.+|+..+++.
T Consensus 365 v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~-Na~rv~~~G~G~-~l~~~~~t~~~l~~ai~~vl~~~~y~~~a 439 (507)
T PHA03392 365 VKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQFY-NTNKYVELGIGR-ALDTVTVSAAQLVLAIVDVIENPKYRKNL 439 (507)
T ss_pred CCEEE---ecCCcccHHHHHHcCCCEEECCCCccHHH-HHHHHHHcCcEE-EeccCCcCHHHHHHHHHHHhCCHHHHHHH
Confidence 99996 67788999999999999999874321111 222345557654 332 26778777777888998777665
Q ss_pred HH
Q 002729 867 TN 868 (887)
Q Consensus 867 ~~ 868 (887)
++
T Consensus 440 ~~ 441 (507)
T PHA03392 440 KE 441 (507)
T ss_pred HH
Confidence 53
No 386
>PLN02555 limonoid glucosyltransferase
Probab=97.45 E-value=0.0025 Score=70.73 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=95.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh----hHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA----GEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~----~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
..++|.||+....+.++.+.-.+.-+...+...||.++.+.. ....+-+-+.+ .+ .+|+.+.++.|..+.+. .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~PQ~~iL~-H 353 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCPQEKVLA-H 353 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCCHHHHhC-C
Confidence 348999999988888888888888888888888888763211 01112222222 23 47788889999877664 4
Q ss_pred cCCcEEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHHHhcCCCCccc--------cCCHHHHHHHHHHHh
Q 002729 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLATGLGEEMI--------VNSMKEYEERAVSLA 857 (887)
Q Consensus 788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~g~~~~~~--------~~~~~~y~~~a~~l~ 857 (887)
..+..|+ ..+|-+|++||+++|||+|+++- +.+.. +.-+...+|+.- -+ .-+.++..+...++.
T Consensus 354 ~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N--a~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm 427 (480)
T PLN02555 354 PSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD--AVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEAT 427 (480)
T ss_pred CccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH--HHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHh
Confidence 6688886 57789999999999999999863 33321 111122224443 22 115666665555666
Q ss_pred cCHHHHHHHHHHHHhh
Q 002729 858 LDRQKLQALTNKLKSV 873 (887)
Q Consensus 858 ~d~~~~~~~~~~~~~~ 873 (887)
.+++ -+.+|++.++.
T Consensus 428 ~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 428 VGEK-AAELKQNALKW 442 (480)
T ss_pred cCch-HHHHHHHHHHH
Confidence 5532 34555555543
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.42 E-value=0.076 Score=60.76 Aligned_cols=80 Identities=23% Similarity=0.211 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHc---CChhHHH
Q 002729 252 ADMAILYYKQAIGCDPRFLEAYNNLGNALKDV----GRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW---NMLPAAA 324 (887)
Q Consensus 252 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---g~~~~A~ 324 (887)
.+.+...+.++.. ..+..+...++.+|..- .+++.|...|.++.... ....+++|.++..- ..+..|.
T Consensus 455 ~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~ 529 (552)
T KOG1550|consen 455 LERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAK 529 (552)
T ss_pred hhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHH
Confidence 3444444444432 23444566666666543 34777777777776655 66777777776541 1256777
Q ss_pred HHHHHHHhccCC
Q 002729 325 SYYKATLAVTTG 336 (887)
Q Consensus 325 ~~~~~~~~~~~~ 336 (887)
.++.++.+.+..
T Consensus 530 ~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 530 RYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHhcCch
Confidence 777777665443
No 388
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.42 E-value=0.0032 Score=69.31 Aligned_cols=103 Identities=14% Similarity=0.258 Sum_probs=75.5
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChh--------hHHHH--HHHHHHcCCCCCcEEEcCCCCcH
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAA--------GEMRL--RAYAVAQGVQPDQIIFTDVAMKQ 781 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~~~l--~~~~~~~g~~~~r~~~~~~~~~~ 781 (887)
+.++|.||+....++.+.++-.+.-|...|...||.+..+.. ....+ -+-+.+. + .+|..+.++.|..
T Consensus 261 ~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~PQ~ 338 (455)
T PLN02152 261 SSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCSQI 338 (455)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCCHH
Confidence 459999999999999999999999999999999998864211 00011 1122221 3 5777778999988
Q ss_pred HHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecc
Q 002729 782 EHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 782 ~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g 820 (887)
+.|. ...+-.|+ ..+|.+|++||+++|||+|+++-
T Consensus 339 ~iL~-h~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~ 373 (455)
T PLN02152 339 EVLR-HRAVGCFV---THCGWSSSLESLVLGVPVVAFPM 373 (455)
T ss_pred HHhC-CcccceEE---eeCCcccHHHHHHcCCCEEeccc
Confidence 7663 23344565 57889999999999999999873
No 389
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.39 E-value=0.00017 Score=46.90 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=23.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002729 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAI 392 (887)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (887)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56777777777777777777777777777765
No 390
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.39 E-value=0.0027 Score=71.22 Aligned_cols=104 Identities=18% Similarity=0.192 Sum_probs=72.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhh---HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAG---EMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 711 ~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
+..++|.||+....++..-+.-.+.-|...+...||.++.+... ...+-+-+.+.-. +.+|++.++.|..+.|.-
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-~~g~~v~~w~PQ~~iL~h- 361 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTK-GKGLIIRGWAPQVLILDH- 361 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhc-cCCEEEecCCCHHHHhcc-
Confidence 34589999999988867666666666788888889988743210 1112222322222 467899999998876632
Q ss_pred cCCcEEecCCCCCCchhHHHHHHhCCceeeec
Q 002729 788 SLADLFLDTPLCNAHTTGTDILWAGLPMITLP 819 (887)
Q Consensus 788 ~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~ 819 (887)
..+..|+ ..+|-+|++||+++|||+|+++
T Consensus 362 ~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 362 QATGGFV---THCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred Cccceee---ecCcchHHHHHHHcCCCeeecc
Confidence 3344575 5777899999999999999987
No 391
>PLN02210 UDP-glucosyl transferase
Probab=97.38 E-value=0.0032 Score=69.75 Aligned_cols=138 Identities=13% Similarity=0.209 Sum_probs=89.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLAD 791 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d 791 (887)
..++|.||+...+..++.++..+.-|+..+...+|.++.+.. ... ...+.+. +..+|.++.++.|..+.|.- ..+.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~-~~~-~~~~~~~-~~~~~g~v~~w~PQ~~iL~h-~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK-AQN-VQVLQEM-VKEGQGVVLEWSPQEKILSH-MAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc-ccc-hhhHHhh-ccCCCeEEEecCCHHHHhcC-cCcC
Confidence 458999999999999999999999999999888898764211 011 1112222 11255566799998887742 3455
Q ss_pred EEecCCCCCCchhHHHHHHhCCceeeecc--cchhhhhHHHHHHh-cCCCCcccc-------CCHHHHHHHHHHHhcCH
Q 002729 792 LFLDTPLCNAHTTGTDILWAGLPMITLPL--EKMATRVAGSLCLA-TGLGEEMIV-------NSMKEYEERAVSLALDR 860 (887)
Q Consensus 792 ~~ld~~~~~g~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~-~g~~~~~~~-------~~~~~y~~~a~~l~~d~ 860 (887)
.|| ..+|-+|++||++.|||+|+++- +.+. -+..+.. +|..- .+. -+.++..+...++..|+
T Consensus 345 ~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~---na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~ 416 (456)
T PLN02210 345 CFV---THCGWNSTIETVVAGVPVVAYPSWTDQPI---DARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGP 416 (456)
T ss_pred eEE---eeCCcccHHHHHHcCCCEEecccccccHH---HHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCc
Confidence 776 57778899999999999999973 3332 1222332 34432 221 25566555555555554
No 392
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.37 E-value=0.00088 Score=71.45 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=93.0
Q ss_pred CCCcEEEEecCCCCCCC-H----HHHHHHHHHHhhcCCceEEEecC-ChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHH
Q 002729 710 PEDKFIFACFNQLYKMD-P----EIFNTWCNILRRVPNSALWLLRF-PAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEH 783 (887)
Q Consensus 710 ~~~~~~~~~~~~~~k~~-~----~~~~~~~~il~~~p~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~ 783 (887)
+.+.+++.++.+..... + .+.++..++.+. ++..+++... .|.....+.+.+.+. ++|.+.+.+++.+|
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~----~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKY----DNVRLIEPLGYEEY 252 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-----TTEEEE----HHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhccc----CCEEEECCCCHHHH
Confidence 56778889999988777 5 444555555555 6665555443 355566776666554 29999999999999
Q ss_pred HHhccCCcEEecCCCCCCchhHH-HHHHhCCceeeec--ccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCH
Q 002729 784 IRRSSLADLFLDTPLCNAHTTGT-DILWAGLPMITLP--LEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDR 860 (887)
Q Consensus 784 ~~~~~~~d~~ld~~~~~g~~t~~-eal~~gvPvvt~~--g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~ 860 (887)
+.+++.+++++ -++| ++. ||.++|+|||++. |+...+|.. |-+- +|..+.++..+.+.+...+.
T Consensus 253 l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nv-lv~~~~~~I~~ai~~~l~~~ 319 (346)
T PF02350_consen 253 LSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNV-LVGTDPEAIIQAIEKALSDK 319 (346)
T ss_dssp HHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEE-EETSSHHHHHHHHHHHHH-H
T ss_pred HHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceE-EeCCCHHHHHHHHHHHHhCh
Confidence 99999999998 6667 888 9999999999995 666666654 5555 66678888777777777774
Q ss_pred HHHHHHHHHHHhhcccCCCCCcC
Q 002729 861 QKLQALTNKLKSVRLTCPLFDTA 883 (887)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~l~d~~ 883 (887)
+.+..+.. ...|..|+.
T Consensus 320 ~~~~~~~~------~~npYgdG~ 336 (346)
T PF02350_consen 320 DFYRKLKN------RPNPYGDGN 336 (346)
T ss_dssp HHHHHHHC------S--TT-SS-
T ss_pred HHHHhhcc------CCCCCCCCc
Confidence 54444332 235666653
No 393
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.37 E-value=0.0032 Score=69.93 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=96.0
Q ss_pred CCCCCCCCCCcEEEEe-cCCC----CCCCHHHHHHHH-HHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcC
Q 002729 703 KRSDYGLPEDKFIFAC-FNQL----YKMDPEIFNTWC-NILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTD 776 (887)
Q Consensus 703 ~r~~~~l~~~~~~~~~-~~~~----~k~~~~~~~~~~-~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~ 776 (887)
.|+++|++++..+.+- +++- .++.|.++++-. +.++ ++.++++...++..++.+++.....++-+-+ ++.+
T Consensus 403 ~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~--~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~-ii~~ 479 (608)
T PRK01021 403 WKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLA--STHQLLVSSANPKYDHLILEVLQQEGCLHSH-IVPS 479 (608)
T ss_pred HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhc--cCeEEEEecCchhhHHHHHHHHhhcCCCCeE-EecC
Confidence 5778899766554443 2222 356777777765 1222 2455655444444345566655443310111 2223
Q ss_pred CCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeee-cccchhhhhHHHHHH----hcC----------CCCcc
Q 002729 777 VAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCL----ATG----------LGEEM 841 (887)
Q Consensus 777 ~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~----~~g----------~~~~~ 841 (887)
. +-...++.||++| -..||.|+|++-+|+|.|.. ....+.-.++--+++ -+| .|| +
T Consensus 480 ~----~~~~~m~aaD~aL----aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPE-l 550 (608)
T PRK01021 480 Q----FRYELMRECDCAL----AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPE-F 550 (608)
T ss_pred c----chHHHHHhcCeee----ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchh-h
Confidence 2 1246778899999 77899999999999996654 444333333333333 122 355 7
Q ss_pred c----cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhhcc
Q 002729 842 I----VNSMKEYEERAVSLALDRQKLQALTNKLKSVRL 875 (887)
Q Consensus 842 ~----~~~~~~y~~~a~~l~~d~~~~~~~~~~~~~~~~ 875 (887)
+ ..+++.-.+. +.+..|++.++++++.+++.+.
T Consensus 551 lqgQ~~~tpe~La~~-l~lL~d~~~r~~~~~~l~~lr~ 587 (608)
T PRK01021 551 IGGKKDFQPEEVAAA-LDILKTSQSKEKQKDACRDLYQ 587 (608)
T ss_pred cCCcccCCHHHHHHH-HHHhcCHHHHHHHHHHHHHHHH
Confidence 7 3466776654 7999999999999998887654
No 394
>PLN02534 UDP-glycosyltransferase
Probab=97.34 E-value=0.0035 Score=69.69 Aligned_cols=102 Identities=19% Similarity=0.315 Sum_probs=73.0
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCCh---hhHHHH-HHHHHHcCCCCCcEEEcCCCCcHHHHHhc
Q 002729 712 DKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPA---AGEMRL-RAYAVAQGVQPDQIIFTDVAMKQEHIRRS 787 (887)
Q Consensus 712 ~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~---~~~~~l-~~~~~~~g~~~~r~~~~~~~~~~~~~~~~ 787 (887)
..++|.||+....++++-+.-.+.-|+..+...||.+..+. .....+ -+-|.+. +...++++.++.|..+.+.
T Consensus 283 ~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~pq~~iL~-- 359 (491)
T PLN02534 283 RSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAPQVLILS-- 359 (491)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCCHHHHhc--
Confidence 45999999999888887777777888899999999987421 101111 1222222 2245688899999877663
Q ss_pred cCCcE--EecCCCCCCchhHHHHHHhCCceeeecc
Q 002729 788 SLADL--FLDTPLCNAHTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 788 ~~~d~--~ld~~~~~g~~t~~eal~~gvPvvt~~g 820 (887)
..++ |+ ..+|.+|++||+++|||+|+++.
T Consensus 360 -h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 360 -HPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred -CCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 3444 64 67789999999999999999975
No 395
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.30 E-value=0.16 Score=53.52 Aligned_cols=129 Identities=12% Similarity=-0.025 Sum_probs=106.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729 42 IYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (887)
Q Consensus 42 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (887)
-....|+.-.|-+-...++...|.++......+.+....|+|+.|...+..+-..-..-..+...+.......|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567889999999999999999999999999999999999999998887665544444456666777888899999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHH
Q 002729 122 QCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170 (887)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (887)
...+-++...-++++....-+......|-++++...+++.+.++|....
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 9999998887778887777777777888999999999999988775433
No 396
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.53 Score=53.49 Aligned_cols=417 Identities=12% Similarity=0.026 Sum_probs=238.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCChHHHHHH
Q 002729 47 HDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQC 123 (887)
Q Consensus 47 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~ 123 (887)
+.-++=+..++.-+.+++.+...+..|..++.+.|++++-...-.++.++.|.++..|.....-... .++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444556666777777888888888888899999999888888888888888888877766554432 3667778888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-------HHcCChHHHHHHHHHHHhhCC-------ChHHHHHHHHHHHHHcCCHHHHH
Q 002729 124 CRQALALNPLLVDAHSNLGNLM-------KAQGLVQEAYSCYLEALRIQP-------TFAIAWSNLAGLFMESGDLNRAL 189 (887)
Q Consensus 124 ~~~~l~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~ 189 (887)
|++++... +.+..|...+... ...++++.-...|.++++.-. .....+..+-..|...-..++.+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88887543 3444444444443 334567777778888776421 12334444555555555556667
Q ss_pred HHHHHHHhhCCCCHHH----HHHHH---HHHHHcCChHHHHHHHHHHH-------hhCCC-hhHHhhHHHHHHHcCChHH
Q 002729 190 QYYKEAVKLKPTFPDA----YLNLG---NVYKALGMPQEAIMCYQRAV-------QTRPN-AIAFGNLASTYYERGQADM 254 (887)
Q Consensus 190 ~~~~~~l~~~~~~~~~----~~~l~---~~~~~~g~~~~A~~~~~~~~-------~~~p~-~~~~~~la~~~~~~g~~~~ 254 (887)
.++...+... -+.++ +.... .......+++.|..-+.+.+ +..+. ...|..+.......|....
T Consensus 252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r 330 (881)
T KOG0128|consen 252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR 330 (881)
T ss_pred HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence 7777666543 22221 11111 11122334444444433332 22332 4556666777777788877
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCC-hhHHHHHHHHHHh
Q 002729 255 AILYYKQAIGCDPRFLEAYNNLGNALK-DVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNM-LPAAASYYKATLA 332 (887)
Q Consensus 255 A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 332 (887)
-...++++....+.+...|...+...- .++-.+.+...+.++++.+|-...+|...-..+.+.+. ...-...+.+.+.
T Consensus 331 i~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls 410 (881)
T KOG0128|consen 331 IQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLS 410 (881)
T ss_pred HHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 777888887666666667766665442 23444555666677777776655555433333333222 2222333333332
Q ss_pred ccCCCchhHhhHHHHHHHcC------CHHHHHHHHHHHHh-------c-CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 002729 333 VTTGLSAPFNNLAVIYKQQG------NYADAISCYNEVLR-------I-DPLAADGLVNRGNTYK-EIGRVTDAIQDYIR 397 (887)
Q Consensus 333 ~~~~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~-------~-~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 397 (887)
..-. .++.........+ +++.-.+.|+.+.. . -......+-..|.... .+++.+.+..++..
T Consensus 411 ~~~~---l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~ 487 (881)
T KOG0128|consen 411 MTVE---LHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNF 487 (881)
T ss_pred HHHH---HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 2111 1111111112222 33333344444433 2 1111233444444444 45788889988888
Q ss_pred HHhcCCCcHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh---HHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 398 AITIRPTMAE-AHANLASAYKDSGHVEAAIKSYKQALLLRPDFP---EATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 398 al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
.+.....+.. .|.....+-...|+...++.++++++..--++. .++..+.....+.|.|+.......+...
T Consensus 488 imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~p 562 (881)
T KOG0128|consen 488 IMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLP 562 (881)
T ss_pred cccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcc
Confidence 8877666555 788888888889999999998888887533332 2233334445556677665555444443
No 397
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.26 E-value=0.13 Score=58.79 Aligned_cols=276 Identities=21% Similarity=0.213 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC---
Q 002729 49 YDMCIARNEEALRLEPRFAECYGNMANAWKEK-----GDIDLAIRYYLVAIEL-----RPNFADAWSNLASAYMRKG--- 115 (887)
Q Consensus 49 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 115 (887)
...|.++++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 35677777666544 3455666666666543 5777777777777651 0113335556666666532
Q ss_pred --ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHc----CCHH
Q 002729 116 --RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG---LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMES----GDLN 186 (887)
Q Consensus 116 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~ 186 (887)
+.+.|..++.++-+.+ ++.+.+.+|.++.... ++..|.++|..+.+. .+..+.+.++.+|..- .+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 4555666666665543 3445555555555443 345566666555432 2334444555444432 3455
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhc
Q 002729 187 RALQYYKEAVKLKPTFPDAYLNLGNVYKAL-GMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGC 265 (887)
Q Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 265 (887)
.|..++.++.+.+ .+.+...++..+... +.+..+...+....+.
T Consensus 382 ~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~--------------------------------- 426 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL--------------------------------- 426 (552)
T ss_pred HHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh---------------------------------
Confidence 5555555555544 223233332222211 3343333333332221
Q ss_pred CCCcHH---HHH-HHHHHHHH----cCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHc----CChhHHHHHHHHHHhc
Q 002729 266 DPRFLE---AYN-NLGNALKD----VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEW----NMLPAAASYYKATLAV 333 (887)
Q Consensus 266 ~p~~~~---~~~-~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~ 333 (887)
.-.... ++. ........ ..+...+...+.++.. ..+..+...++++|..- .+++.|...|.++...
T Consensus 427 g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 427 GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 111100 000 00000000 1244556666666543 45677788888887754 4588999999998887
Q ss_pred cCCCchhHhhHHHHHHHc---CCHHHHHHHHHHHHhcCCC
Q 002729 334 TTGLSAPFNNLAVIYKQQ---GNYADAISCYNEVLRIDPL 370 (887)
Q Consensus 334 ~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~ 370 (887)
. .....++|.++..- .....|..++.++.+.+..
T Consensus 505 ~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 505 G---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred h---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 7 78888899888642 1278999999998876644
No 398
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.20 E-value=0.32 Score=50.37 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=78.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhC----CCc----hhHHHHHHHHHHhcC-CHHHHHHHHHHHHhc----CCC----------
Q 002729 9 MYKSGSYKQALEHSNSVYERN----PLR----TDNLLLLGAIYYQLH-DYDMCIARNEEALRL----EPR---------- 65 (887)
Q Consensus 9 ~~~~g~~~~A~~~~~~~l~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~----~p~---------- 65 (887)
..++|+++.|..++.++-... |+. ...++..|......+ ++++|...++++.+. .+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467889999999998876543 222 345677777777788 888888888888765 111
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 002729 66 FAECYGNMANAWKEKGDID---LAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALN 131 (887)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 131 (887)
...++..++.+|...+.++ +|....+.+-+..|+.+..+.....+..+.++.+++.+.+.+++..-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 1245566666776666544 34444455555556666666555555555667777777777776543
No 399
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.18 E-value=0.0053 Score=65.46 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCC
Q 002729 711 EDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLA 790 (887)
Q Consensus 711 ~~~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~ 790 (887)
+...++++++....- +++ ++++..|+..+.++|.+.. .. ..++|.+.+.. ..++.+.+..|
T Consensus 191 ~~~~iLv~~gg~~~~-----~~~-~~l~~~~~~~~~v~g~~~~-~~-----------~~~ni~~~~~~-~~~~~~~m~~a 251 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DLI-EALKALPDYQFIVFGPNAA-DP-----------RPGNIHVRPFS-TPDFAELMAAA 251 (318)
T ss_pred CCCEEEEEeCCCcHH-----HHH-HHHHhCCCCeEEEEcCCcc-cc-----------cCCCEEEeecC-hHHHHHHHHhC
Confidence 345677777766433 443 5677788877777765421 10 15778888754 25667778899
Q ss_pred cEEecCCCCCCchhHHHHHHhCCceeeecccc-hhhhhHHHHHHhcCCCC
Q 002729 791 DLFLDTPLCNAHTTGTDILWAGLPMITLPLEK-MATRVAGSLCLATGLGE 839 (887)
Q Consensus 791 d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~g~~~ 839 (887)
|+++- -+|.+|++||+++|+|+|.++-+. ...+.-+..|..+|+..
T Consensus 252 d~vIs---~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~ 298 (318)
T PF13528_consen 252 DLVIS---KGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI 298 (318)
T ss_pred CEEEE---CCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE
Confidence 99983 466777999999999999998764 45566688899999977
No 400
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.18 E-value=0.00093 Score=43.61 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (887)
++++.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
No 401
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.011 Score=59.33 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=87.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729 32 RTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNL 107 (887)
Q Consensus 32 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (887)
.+..+-.-|+-|++.++|..|...|.+.++..-. ++..|.+.+.+....|+|..|+....+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4666777899999999999999999999987543 467888999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC
Q 002729 108 ASAYMRKGRLNEAAQCCRQALALNP 132 (887)
Q Consensus 108 a~~~~~~g~~~~A~~~~~~~l~~~p 132 (887)
+.+++.+.++.+|...++..+..+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999988876553
No 402
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.17 E-value=0.00072 Score=44.16 Aligned_cols=32 Identities=47% Similarity=0.635 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
.+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35555666666666666666666666666554
No 403
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.16 E-value=0.053 Score=56.91 Aligned_cols=278 Identities=15% Similarity=0.136 Sum_probs=142.7
Q ss_pred cCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCC--CC-----------HHHHHHHHH
Q 002729 543 SSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSA--MS-----------SDMIAKLIN 609 (887)
Q Consensus 543 s~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~i~ 609 (887)
+-|..+.|..+|+.++++.+...+.||++.+-.. +...+-++..--.+..+.. -+ ..++.+.++
T Consensus 4 wiDi~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~~l~~~~~ 80 (335)
T PF04007_consen 4 WIDITHPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQYKLLKLIK 80 (335)
T ss_pred EEECCCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4466666788999999999999999999876432 2223333322222222211 11 356788888
Q ss_pred hCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCCCcCC----CCcc--ceeecCCcc
Q 002729 610 EDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAH----IYSE--KLVHVPHCY 683 (887)
Q Consensus 610 ~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~----~~~e--~~~~lp~~~ 683 (887)
+.++||+|- ++. ..-..+....-.|+.+. .-.+.+.-...+-+=++|.++.|..... .+.. ++.+-|+..
T Consensus 81 ~~~pDv~is--~~s-~~a~~va~~lgiP~I~f-~D~e~a~~~~~Lt~Pla~~i~~P~~~~~~~~~~~G~~~~i~~y~G~~ 156 (335)
T PF04007_consen 81 KFKPDVAIS--FGS-PEAARVAFGLGIPSIVF-NDTEHAIAQNRLTLPLADVIITPEAIPKEFLKRFGAKNQIRTYNGYK 156 (335)
T ss_pred hhCCCEEEe--cCc-HHHHHHHHHhCCCeEEE-ecCchhhccceeehhcCCeeECCcccCHHHHHhcCCcCCEEEECCee
Confidence 899999983 222 11111222223454332 1122222222222225666666755321 1222 465565521
Q ss_pred -ccCCCccccccCCCCCCCCCCCCCCCCCCcEEEEec---CCCC-CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHH
Q 002729 684 -FVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACF---NQLY-KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRL 758 (887)
Q Consensus 684 -~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~---~~~~-k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l 758 (887)
+.+-++ ..| .+....++|+.++.+++.=+ +..+ +-+...+.-..+.|....+..+++...... . .+
T Consensus 157 E~ayl~~------F~P-d~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~-~-~~ 227 (335)
T PF04007_consen 157 ELAYLHP------FKP-DPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ-R-EL 227 (335)
T ss_pred eEEeecC------CCC-ChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch-h-hH
Confidence 111111 112 23456778886555554322 2221 223333333334444555554444333222 1 12
Q ss_pred HHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeee-cccchhhhhHHHHHHhcCC
Q 002729 759 RAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATRVAGSLCLATGL 837 (887)
Q Consensus 759 ~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~~~g~ 837 (887)
++..+ +.+.+. .-+.+.++.-||+++ -+|||.+.||-.+|+|+|+. +|..+. + .-.|...|+
T Consensus 228 ---~~~~~-----~~i~~~--~vd~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--v-d~~L~~~Gl 290 (335)
T PF04007_consen 228 ---FEKYG-----VIIPPE--PVDGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--V-DKYLIEKGL 290 (335)
T ss_pred ---HhccC-----ccccCC--CCCHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--H-HHHHHHCCC
Confidence 22222 344332 123345566799998 78899999999999999974 444211 1 134666687
Q ss_pred CCccccCCHHHHHHHHHH
Q 002729 838 GEEMIVNSMKEYEERAVS 855 (887)
Q Consensus 838 ~~~~~~~~~~~y~~~a~~ 855 (887)
= +-..|.++-++...+
T Consensus 291 -l-~~~~~~~ei~~~v~~ 306 (335)
T PF04007_consen 291 -L-YHSTDPDEIVEYVRK 306 (335)
T ss_pred -e-EecCCHHHHHHHHHH
Confidence 2 455888887774444
No 404
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.15 E-value=0.3 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 002729 409 HANLASAYKDSGHVEAAIKSYKQAL 433 (887)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al 433 (887)
..+.|.-.++.++|++|.++|+-++
T Consensus 249 LW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 249 LWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3444566666666666666666554
No 405
>PRK11619 lytic murein transglycosylase; Provisional
Probab=97.12 E-value=0.87 Score=52.82 Aligned_cols=403 Identities=11% Similarity=0.013 Sum_probs=221.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH---H
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLH--DYDMCIARNEEALRLEPRFAECYGNMANA---W 77 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~---~ 77 (887)
|..|...++.|++.++..+..++ ...|- ..|..........+ .++ .+...++.+|+.+..-...... +
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l-~d~pL--~~yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTL-KDYPL--YPYLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc-cCCCc--HhHHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 56677888888888876666654 33443 22222222222222 333 3444455667665444433333 2
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002729 78 KEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSC 157 (887)
Q Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 157 (887)
.+.+++..-+.++ ...|.+.......+......|+.++|....+++.......+.....+-..+.+.|........
T Consensus 110 a~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d~w 185 (644)
T PRK11619 110 ARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLAYL 185 (644)
T ss_pred HHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHHHH
Confidence 3455666555532 234777777788888888899988888888887766655555555555555555544333221
Q ss_pred HHHHHhhCCChHHHHHHHHHHH-----------HH-cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHH
Q 002729 158 YLEALRIQPTFAIAWSNLAGLF-----------ME-SGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIM 224 (887)
Q Consensus 158 ~~~al~~~p~~~~~~~~la~~~-----------~~-~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 224 (887)
-+--+....++......+...+ .. ..+...+...+.. ..+.. ......++.......+.+.|..
T Consensus 186 ~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 186 ERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 1111111111111111111111 00 0111111111111 11111 1122223333445567788888
Q ss_pred HHHHHHhhCC---C--hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002729 225 CYQRAVQTRP---N--AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL 299 (887)
Q Consensus 225 ~~~~~~~~~p---~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (887)
.+.+...... . ...+..++......+...+|...+..+..... +.+............++++.+...+..+-..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 8887644332 1 33444555444444336677777776653322 2233444444556888998888888776554
Q ss_pred CCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCH-H--HH-HHHHHHHHhcCCCCHHHH
Q 002729 300 QPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNY-A--DA-ISCYNEVLRIDPLAADGL 375 (887)
Q Consensus 300 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~--~A-~~~~~~al~~~p~~~~~~ 375 (887)
........+-+|..+...|+.++|...|+++.. +. ..|-.++.-. .|.. . .. ...-...+. ....
T Consensus 342 ~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LAa~~--Lg~~~~~~~~~~~~~~~~~~-----~~~~ 410 (644)
T PRK11619 342 AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVAAQR--LGEEYPLKIDKAPKPDSALT-----QGPE 410 (644)
T ss_pred hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHHHHH--cCCCCCCCCCCCCchhhhhc-----cChH
Confidence 455677888999998889999999999999754 21 1222333221 2211 0 00 000000111 1234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002729 376 VNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQAL 433 (887)
Q Consensus 376 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 433 (887)
...+..+...|+..+|...+..++.. .+..-...++....+.|.++.++....+..
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~ 466 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAGK 466 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhch
Confidence 66788889999999999999988875 235667788888889999999988776554
No 406
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.012 Score=54.35 Aligned_cols=119 Identities=20% Similarity=0.176 Sum_probs=77.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHH
Q 002729 345 AVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEA 424 (887)
Q Consensus 345 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 424 (887)
+......++.+.++..+++++.+.....-.-... ..-.......++... ..+...++..+...|++++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLRELY------LDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHHH
Confidence 4445567788888888888887642211000000 000111111222211 3566778888889999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhc
Q 002729 425 AIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVN 475 (887)
Q Consensus 425 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 475 (887)
|+..+++++..+|-+..++..++.++...|+..+|.+.|+++...+.+.++
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999888876653
No 407
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.026 Score=52.39 Aligned_cols=117 Identities=20% Similarity=0.111 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCChHHHHHHH
Q 002729 51 MCIARNEEALRLEPRF---AECYGNMANAWKEKGDIDLAIRYYLVAIELRPN---FADAWSNLASAYMRKGRLNEAAQCC 124 (887)
Q Consensus 51 ~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~ 124 (887)
+.....++....++.+ ..+-..++..+...|++++|+..++.++....+ ...+-..++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444455555555444 345567788888899999999999888865333 1335667888888999999998887
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh
Q 002729 125 RQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF 168 (887)
Q Consensus 125 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (887)
......+ -........|+++...|+-++|...|+++++..+..
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 122345678889999999999999999998886443
No 408
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.06 E-value=0.0012 Score=43.01 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 409
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.04 E-value=0.23 Score=52.10 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCC----------
Q 002729 355 ADAISCYNEVLRIDPLAADGLVNRGNTYKE----IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSG---------- 420 (887)
Q Consensus 355 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------- 420 (887)
..|...|.++.... ++.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 46777777776654 66777777777755 2477888888888887766 67777777 555555
Q ss_pred -----CHHHHHHHHHHHHHcCCC
Q 002729 421 -----HVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 421 -----~~~~A~~~~~~al~~~p~ 438 (887)
+...|..++.++....+.
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCCh
Confidence 556666666666555443
No 410
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.02 E-value=0.49 Score=56.55 Aligned_cols=398 Identities=12% Similarity=0.015 Sum_probs=202.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002729 39 LGAIYYQLHDYDMCIARNEEALRLEPRF---AECYGNMANAWKEK----G---DIDLAIRYYLVAIELRPNFADAWSNLA 108 (887)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 108 (887)
...++...+.|+.|+..|++.-...|.. .++.+..|.....+ | .+++|+..|++.-. .|.-+--|...+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456777888999999999998888864 46667777665532 2 46777777776543 455566788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcC
Q 002729 109 SAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQ-----GLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESG 183 (887)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 183 (887)
.+|.++|++++-++++.-+++..|..+..-...-.+..++ .+-..|....--++..-|.....-
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 628 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSR----------- 628 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccch-----------
Confidence 8999999999999999999998887765433222222211 112233333333344444332211
Q ss_pred CHHHHHHHHHHHHh---------hCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCC
Q 002729 184 DLNRALQYYKEAVK---------LKPTFPDAY---LNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQ 251 (887)
Q Consensus 184 ~~~~A~~~~~~~l~---------~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~ 251 (887)
+-...++.... .++...... +.+-.. .-.|..---.++++++.+..+ ..+..+.-.+....|+
T Consensus 629 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 703 (932)
T PRK13184 629 ---EEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-FWSGFTPFLPELFQRAWDLRD-YRALADIFYVACDLGN 703 (932)
T ss_pred ---HHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-HHhcCchhhHHHHHHHhhccc-HHHHHHHHHHHHHhcc
Confidence 11111111111 111111111 111111 112333344455555555433 3555555566677788
Q ss_pred hHHHHHHHHHHHhc-----CCCcH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHhHHHHHHHc
Q 002729 252 ADMAILYYKQAIGC-----DPRFL--------EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQ-ALTNLGNIYMEW 317 (887)
Q Consensus 252 ~~~A~~~~~~~l~~-----~p~~~--------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~ 317 (887)
++-+.+......+. .|.+. ..+..-..++.....++++.+.+.+ ..|.... +....+.-....
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 780 (932)
T PRK13184 704 WEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDN---TDPTLILYAFDLFAIQALLD 780 (932)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhh---CCHHHHHHHHHHHHHHHHHh
Confidence 77666555444311 11111 1122223333444455555543322 2222111 111111111122
Q ss_pred CChhHHHHHHHHHHhc---cCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002729 318 NMLPAAASYYKATLAV---TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLR--IDPLAADGLVNRGNTYKEIGRVTDAI 392 (887)
Q Consensus 318 g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~ 392 (887)
++.+.-....+..... .............+|....++++|-+++...-. ...+...++...|.-+.-.++-+-|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (932)
T PRK13184 781 EEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAK 860 (932)
T ss_pred ccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHH
Confidence 2222222222222221 112233344556777788888888888744311 22355667788888888888888888
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHHHHHHH
Q 002729 393 QDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMFSEVEG 468 (887)
Q Consensus 393 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 468 (887)
..|..+.+-.+- +. ...+..+.-.|...+...++++- .....+...+.|.|+-++. ..++.+-.
T Consensus 861 ~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 924 (932)
T PRK13184 861 AHFSGCREDALF-PR--SLDGDIFDYLGKISDNLSWWEKK--------QLLRQKFLYFHCLGDSEER-DKYRQAYL 924 (932)
T ss_pred HHHhhccccccC-cc--hhhccccchhccccccccHHHHH--------HHHHHHHHHHHHhCChhHh-HHHHHHHH
Confidence 888777632211 11 22344455556666665555542 2233445556677776655 44444433
No 411
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.02 E-value=0.0007 Score=67.87 Aligned_cols=92 Identities=25% Similarity=0.237 Sum_probs=60.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHH
Q 002729 40 GAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNE 119 (887)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 119 (887)
+.-.+..|++++|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+...-|...+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhC
Q 002729 120 AAQCCRQALALN 131 (887)
Q Consensus 120 A~~~~~~~l~~~ 131 (887)
|...+..+.+++
T Consensus 201 aa~dl~~a~kld 212 (377)
T KOG1308|consen 201 AAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHhcc
Confidence 666666666654
No 412
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.98 E-value=0.017 Score=60.09 Aligned_cols=211 Identities=12% Similarity=0.099 Sum_probs=118.3
Q ss_pred HHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCCcccEEEecCccCCCCcCCC-CccceeecCCccccC
Q 002729 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHI-YSEKLVHVPHCYFVN 686 (887)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~-~~e~~~~lp~~~~~~ 686 (887)
+....+|++|-..+.|...-+-+-.....++.+..++.|..- ...+|++|+-.. +.. -..+++..++.--..
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~H------D~~~~~~Nvl~t~ga~~~i 125 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEH------DRLPRGPNVLPTLGAPNRI 125 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcc------cCcCCCCceEecccCCCcC
Confidence 444679999866666644333333334566788888999755 788999887222 221 234455554321111
Q ss_pred CCccccccCCCCCCCCCCCCC-CCCC--CcEEEEecCCCCCCCHH----HHHHHHHHHhhcCCceEEEecC---ChhhHH
Q 002729 687 DYKQKNMDVLDPNCQPKRSDY-GLPE--DKFIFACFNQLYKMDPE----IFNTWCNILRRVPNSALWLLRF---PAAGEM 756 (887)
Q Consensus 687 ~~~~~~~~~~~~~~~~~r~~~-~l~~--~~~~~~~~~~~~k~~~~----~~~~~~~il~~~p~~~l~~~~~---~~~~~~ 756 (887)
++..... .......++ .+|. -.+++|.-++.++++++ +++...++.+..+ ..++|... ++....
T Consensus 126 ~~~~l~~-----a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~ 199 (311)
T PF06258_consen 126 TPERLAE-----AAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEA 199 (311)
T ss_pred CHHHHHH-----HHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHH
Confidence 1110000 000000001 1233 34678888889999998 3444445555666 55666543 233334
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC-chh-HHHHHHhCCceeeecccchhhhhHH--HHH
Q 002729 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA-HTT-GTDILWAGLPMITLPLEKMATRVAG--SLC 832 (887)
Q Consensus 757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g-~~t-~~eal~~gvPvvt~~g~~~~~r~~~--~~l 832 (887)
.|++.+. +...+.+....+..-|.+++..||.++ .++ +.+ +.||++.|.||.+++-+.-.+|+.- ..|
T Consensus 200 ~L~~~~~----~~~~~~~~~~~~~nPy~~~La~ad~i~----VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L 271 (311)
T PF06258_consen 200 ALRELLK----DNPGVYIWDGTGENPYLGFLAAADAIV----VTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL 271 (311)
T ss_pred HHHHhhc----CCCceEEecCCCCCcHHHHHHhCCEEE----EcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH
Confidence 4444443 345663334444445888889999998 555 444 4699999999998877764455543 334
Q ss_pred HhcCCCC
Q 002729 833 LATGLGE 839 (887)
Q Consensus 833 ~~~g~~~ 839 (887)
...|.--
T Consensus 272 ~~~g~~r 278 (311)
T PF06258_consen 272 EERGAVR 278 (311)
T ss_pred HHCCCEE
Confidence 4445543
No 413
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.027 Score=56.48 Aligned_cols=101 Identities=23% Similarity=0.216 Sum_probs=90.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 002729 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPN----FADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNL 141 (887)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 141 (887)
.+..+..-|+-|++.++|..|+..|.+.++..-. +...|.+.+.+....|+|..|+.-..+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 3566777899999999999999999999987433 566899999999999999999999999999999999999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCC
Q 002729 142 GNLMKAQGLVQEAYSCYLEALRIQP 166 (887)
Q Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~p 166 (887)
+.++..+.++.+|..+.+..+..+.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999988876543
No 414
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.95 E-value=0.002 Score=42.04 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 373 DGLVNRGNTYKEIGRVTDAIQDYIRAITIRPT 404 (887)
Q Consensus 373 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 404 (887)
.+++.+|.++...|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45566666666666666666666666666665
No 415
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.94 E-value=0.059 Score=56.97 Aligned_cols=165 Identities=11% Similarity=0.077 Sum_probs=97.4
Q ss_pred HHHHHHHhhCCCchhHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 002729 20 EHSNSVYERNPLRTDNLLLLGAIYYQLHD------------YDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAI 87 (887)
Q Consensus 20 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 87 (887)
..|++.++.+|.+.++|..+....-..-. .+.-+.++++|++.+|++...+..+.....+..+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888999999999888765544322 345666777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729 88 RYYLVAIELRPNFADAWSNLASAYMR---KGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (887)
Q Consensus 88 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (887)
+.+++++..+|++...|..+...... .-.+++....|.++++.-..... ............+
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~----------~~~~~~~~~~~~e----- 150 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS----------GRMTSHPDLPELE----- 150 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc----------cccccccchhhHH-----
Confidence 77777777777777766665554433 22455666666665543110000 0000000000000
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002729 165 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKP 200 (887)
Q Consensus 165 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (887)
.....++..+.....+.|..+.|+..++..++.+-
T Consensus 151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 00123445566666777777777777777777653
No 416
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.018 Score=53.19 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=78.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002729 310 LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVT 389 (887)
Q Consensus 310 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 389 (887)
.+......++.+.+...+++++.+.....-.-... ..-.......+++. ...+...++..+...|+++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 35556678899999999999998864432111000 01112222233332 2346677888899999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729 390 DAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALL 434 (887)
Q Consensus 390 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (887)
+|+..+++++..+|.+..++..+..+|...|+..+|++.|+++..
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754
No 417
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0099 Score=59.78 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=99.5
Q ss_pred hcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEE-cCCCCcHHHHHhccCCcEE--ecCCCCCC--chhHHHHHHhCC
Q 002729 739 RVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIF-TDVAMKQEHIRRSSLADLF--LDTPLCNA--HTTGTDILWAGL 813 (887)
Q Consensus 739 ~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~-~~~~~~~~~~~~~~~~d~~--ld~~~~~g--~~t~~eal~~gv 813 (887)
..|+...+|-|.||. .+...+...+... .+|.| +++..-++|...++.||+- |.|+..+= .+-++|-.-||+
T Consensus 290 ~lP~llciITGKGPl-kE~Y~~~I~~~~~--~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcgl 366 (444)
T KOG2941|consen 290 NLPSLLCIITGKGPL-KEKYSQEIHEKNL--QHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGL 366 (444)
T ss_pred CCCcEEEEEcCCCch-hHHHHHHHHHhcc--cceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCC
Confidence 367656666678887 6777777888876 66666 5788889999999999964 55544333 445799999999
Q ss_pred ceeeecccchhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhh
Q 002729 814 PMITLPLEKMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLAL----DRQKLQALTNKLKSV 873 (887)
Q Consensus 814 Pvvt~~g~~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~----d~~~~~~~~~~~~~~ 873 (887)
||+++.=.+..+=|-. |.++ ++..|.++..+...-|.+ +...+.+++.++++.
T Consensus 367 PvcA~~fkcl~ELVkh------~eNG-lvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 367 PVCAVNFKCLDELVKH------GENG-LVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred ceeeecchhHHHHHhc------CCCc-eEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 9999988888774443 9999 999999999998888888 899999999999886
No 418
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.85 E-value=0.52 Score=49.38 Aligned_cols=181 Identities=23% Similarity=0.199 Sum_probs=85.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCC
Q 002729 45 QLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEK----GDIDLAIRYYLVAIELRPNFADAWSNLASAYMR----KGR 116 (887)
Q Consensus 45 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 116 (887)
..+++..|...+.++-.. .+......++.+|... .+..+|...|..+. ...++.+.+.+|..|.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence 444555555555544431 1123444444444332 23445555555332 22334455555555544 235
Q ss_pred hHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH----cCC
Q 002729 117 LNEAAQCCRQALALNPLL-VDAHSNLGNLMKAQG-------LVQEAYSCYLEALRIQPTFAIAWSNLAGLFME----SGD 184 (887)
Q Consensus 117 ~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 184 (887)
..+|..+|+++.+.+... ..+...++..+..-. +...|...|.++-... +..+...++.+|.. ..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 555555555555443222 122444444444321 1224555555554433 44455555555433 235
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhCC
Q 002729 185 LNRALQYYKEAVKLKPTFPDAYLNLGNVYKALG---------------MPQEAIMCYQRAVQTRP 234 (887)
Q Consensus 185 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~p 234 (887)
+.+|..+|.++.+... ....+.++ ++...| +...|...+.......+
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 5666666666655544 44555555 444333 55666666666655443
No 419
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.79 E-value=0.0015 Score=65.60 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=58.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 002729 350 QQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSY 429 (887)
Q Consensus 350 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 429 (887)
..|.+++|++.|..+++++|.....+...+.++.++++...|+..+..+++++|+...-|-..+.+...+|++++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCC
Q 002729 430 KQALLLRP 437 (887)
Q Consensus 430 ~~al~~~p 437 (887)
+.+.+++-
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 66666643
No 420
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.78 E-value=1.6 Score=50.45 Aligned_cols=231 Identities=16% Similarity=0.030 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-
Q 002729 134 LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPT---------FAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFP- 203 (887)
Q Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~- 203 (887)
++......+.......++.+|..+..++...-+. ........+.+....|+.++|.+..+.++..-|.+.
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 4455566667777778888888877776654322 123333456666777888888888888877665543
Q ss_pred ----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHcCChH--HHHHHHHHHH----hcC
Q 002729 204 ----DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQAD--MAILYYKQAI----GCD 266 (887)
Q Consensus 204 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~g~~~--~A~~~~~~~l----~~~ 266 (887)
..+..++.+..-.|++++|..+..++.+.... ..+....+.++..+|+.. +....+...- ...
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 35667777777888888888877777665222 223344466666777322 2222222221 222
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCChH---HHHhHHHHHHHcCChhHHHHHHHHHHhccCCC--
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSL----QPSHPQ---ALTNLGNIYMEWNMLPAAASYYKATLAVTTGL-- 337 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 337 (887)
|-........+.++..--+++.+..-..+.++. .|.... .+..++.++...|++++|...+..+.....+.
T Consensus 574 ~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~ 653 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQY 653 (894)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 332212222222222222245554444444443 222211 22467777788888888887777766553322
Q ss_pred chhHh-----hHHHHHHHcCCHHHHHHHHHHH
Q 002729 338 SAPFN-----NLAVIYKQQGNYADAISCYNEV 364 (887)
Q Consensus 338 ~~~~~-----~la~~~~~~g~~~~A~~~~~~a 364 (887)
...|. ........+|+.++|.....+.
T Consensus 654 ~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 654 HVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 11111 1122233567777777766663
No 421
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=96.73 E-value=0.0017 Score=66.38 Aligned_cols=210 Identities=16% Similarity=0.099 Sum_probs=95.4
Q ss_pred HHHHHHHhCCCeEEEecCCcCCCCchhhhhc-CCCceEEeccccCCCCCCCcccEEEecCccCCCCcCCCCccceeecCC
Q 002729 603 MIAKLINEDKIQILINLNGYTKGARNEIFAM-QPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPH 681 (887)
Q Consensus 603 ~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~-r~apvq~~~~g~~~t~g~~~~d~~~~d~~~~p~~~~~~~~e~~~~lp~ 681 (887)
.+.+.||..+.|++||+.+... ..++++ -.||.-+.+-+... .+....+..+.. +. ..+-.++...+-.
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~~---s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~----~~--~~~~v~~~~~ll~ 72 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSFR---SALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDR----PP--NKHMVDRYLSLLS 72 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SHH---HHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-T----TS--SSSHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCcc---HHHHHHHHhhccccccCccch-hhhhcccccccc----cc--cchHHHHHHHHHH
Confidence 5789999999999999977543 333333 45787766654443 111111111211 11 1222222111111
Q ss_pred ccccCCCccccccCCCC--CCCCCCCCCC-CCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHH
Q 002729 682 CYFVNDYKQKNMDVLDP--NCQPKRSDYG-LPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEM 756 (887)
Q Consensus 682 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~-l~~~~~~~~~~~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 756 (887)
...........+....+ .....+...+ .....+++....+ ..|. ..+.+..+.+-+.+.. ..+++.|.+.....
T Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~~~~~ 151 (247)
T PF01075_consen 73 ELLGIPYPSTKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPEEQEK 151 (247)
T ss_dssp HHHTS-SSSSSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSHHHHH
T ss_pred HhcCCCCCCCCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccchHHHH
Confidence 00100000000000000 0011222222 3334455443333 3344 4444444444444444 45666666554222
Q ss_pred HHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 757 ~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
...+.+ ..+.....+.+.|..+-.+..+++..+|+++ -+-+-.+==|-++|+|+|++-|++-..|.+
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~~~~l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 152 EIADQI-AAGLQNPVINLAGKTSLRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHH-HTTHTTTTEEETTTS-HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHH-HHhcccceEeecCCCCHHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 222222 2333223688899999999999999999998 222223334677999999999999888766
No 422
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.096 Score=48.80 Aligned_cols=94 Identities=19% Similarity=0.109 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC----hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002729 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALK 281 (887)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 281 (887)
...++..+...+++++|+..++..+....+ ..+-..++.+..+.|++++|+..+....+..- ....-...|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHH
Confidence 345566666666667776666666654333 34445566666666666666666554332110 1112334566666
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q 002729 282 DVGRVDEAIQCYNQCLSLQ 300 (887)
Q Consensus 282 ~~g~~~~A~~~~~~al~~~ 300 (887)
..|+-++|+..|+++++..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6666666666666666654
No 423
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.69 E-value=0.11 Score=54.77 Aligned_cols=164 Identities=13% Similarity=0.066 Sum_probs=99.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHH
Q 002729 54 ARNEEALRLEPRFAECYGNMANAWKEKGD------------IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAA 121 (887)
Q Consensus 54 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 121 (887)
.-|++.++.+|.+..+|..++...-..-. .+.-+.+|++|++.+|++...+..+.....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677888899999999888876554432 345566677777777777777776666666666666667
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002729 122 QCCRQALALNPLLVDAHSNLGNLMKA---QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKL 198 (887)
Q Consensus 122 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (887)
+.+++++..+|++...|..+...... .-.+++....|.++++.-... .............++
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~----------~~~~~~~~~~~~~~e----- 150 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRR----------RSGRMTSHPDLPELE----- 150 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh----------hccccccccchhhHH-----
Confidence 77777777777766666554444333 223555555555554321100 000000000000000
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729 199 KPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTR 233 (887)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (887)
.....++..+.......|..+.|+..++..++.+
T Consensus 151 -~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 151 -EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred -HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 0113467778888999999999999999999874
No 424
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.76 Score=49.89 Aligned_cols=307 Identities=13% Similarity=0.057 Sum_probs=164.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHH-------HHHHHHHHHHcCC--HHHHHHH
Q 002729 121 AQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIA-------WSNLAGLFMESGD--LNRALQY 191 (887)
Q Consensus 121 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~--~~~A~~~ 191 (887)
.-++.-++...|. ....+-.+....|.-+++...+-++-...+..... ++.....+...++ .+...+.
T Consensus 179 ~G~~~~~~Sllpp---~i~~~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~ 255 (546)
T KOG3783|consen 179 YGAFTLLLSMLPP---KILRLLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKA 255 (546)
T ss_pred hHHHHHHHHcCcH---HHHHHHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 3344444444442 22333344445555556555555444333222111 1122222222332 2445555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 002729 192 YKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPR 268 (887)
Q Consensus 192 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 268 (887)
+....+..|+++......+..+...|+.+.|+..++..++..-. ...++.++.++.-..+|..|...+....+...-
T Consensus 256 Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 256 LKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred hHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 66666678888888888888888888877888888877761111 445667788888888888888888887765554
Q ss_pred cHHHHHHHH-HHHHH--------cCCHHHHHHHHHHHHh---cCCCChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCC
Q 002729 269 FLEAYNNLG-NALKD--------VGRVDEAIQCYNQCLS---LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTG 336 (887)
Q Consensus 269 ~~~~~~~la-~~~~~--------~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 336 (887)
..-.|..++ .++.. .|+.++|..+++...+ ..|.+..+-.. -..++.++-.+.- .++.
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKverf~~~~~-~~~~ 405 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVERFVKRGP-LNAS 405 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHHHhcccc-cccc
Confidence 443444444 22211 2344444444443322 22221111000 0011111111110 1111
Q ss_pred Cch--hHhhHHHHHHHc--CCHHHHHHHHHH--HHhcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC-
Q 002729 337 LSA--PFNNLAVIYKQQ--GNYADAISCYNE--VLRIDPLAAD--GLVNRGNTYKEIGRVTDAIQDYIRAITIR---PT- 404 (887)
Q Consensus 337 ~~~--~~~~la~~~~~~--g~~~~A~~~~~~--al~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~- 404 (887)
... .+..++..+..- ...++..+.-.. .-+.+..+.+ -+..+|.++..+|+-..|..+|...++.. ..
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d 485 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTED 485 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccc
Confidence 111 233344333321 122222211111 1112211222 45667999999999999999999888431 11
Q ss_pred ---cHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCh
Q 002729 405 ---MAEAHANLASAYKDSGH-VEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 405 ---~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~ 440 (887)
.|.+++.+|..|.++|. ..++..++.+|.+...++.
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 26799999999999998 9999999999998876654
No 425
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.65 E-value=0.046 Score=58.17 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch-hhhhHHHHHHhcCCCC
Q 002729 769 PDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM-ATRVAGSLCLATGLGE 839 (887)
Q Consensus 769 ~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~-~~r~~~~~l~~~g~~~ 839 (887)
++++.+.+..+ +++...+..||+++- -+|.+|+.||+++|+|+|..+-... ....-+..+...|+..
T Consensus 228 ~~~v~~~~~~~-~~~~~~l~~ad~vI~---~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~ 295 (321)
T TIGR00661 228 NENVEIRRITT-DNFKELIKNAELVIT---HGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI 295 (321)
T ss_pred CCCEEEEECCh-HHHHHHHHhCCEEEE---CCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE
Confidence 47888888766 678888899999983 3456788999999999999987532 4456667788889865
No 426
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.012 Score=64.74 Aligned_cols=113 Identities=18% Similarity=0.027 Sum_probs=84.7
Q ss_pred CCCCCCCC--CCcEEEEecCCC--CCCCHHHHHHHHHHHhhcCCceEEEecCC-hhhHHHHHHHHHHcCCCCCcEEEcCC
Q 002729 703 KRSDYGLP--EDKFIFACFNQL--YKMDPEIFNTWCNILRRVPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDV 777 (887)
Q Consensus 703 ~r~~~~l~--~~~~~~~~~~~~--~k~~~~~~~~~~~il~~~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~r~~~~~~ 777 (887)
.+..+||+ .+.++|+..+|+ .|-.+-++++--.+++.. .+++++|.+ +..+..+...+..+. +++.+.-.
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~gd~~le~~~~~la~~~~---~~~~~~i~ 356 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTGDPELEEALRALASRHP---GRVLVVIG 356 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecCcHHHHHHHHHHHHhcC---ceEEEEee
Confidence 56678888 367899999998 488888888888888776 889888866 233456666666553 35555444
Q ss_pred CCcHHHHHhccCCcEEecCCCCCC-chhHHHHHHhCCceeeecc
Q 002729 778 AMKQEHIRRSSLADLFLDTPLCNA-HTTGTDILWAGLPMITLPL 820 (887)
Q Consensus 778 ~~~~~~~~~~~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g 820 (887)
.+..-....|..+|++|=|+-|.+ |.|-++||..|.+.|.++-
T Consensus 357 ~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~~t 400 (487)
T COG0297 357 YDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVRET 400 (487)
T ss_pred ecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEccc
Confidence 444445667899999999999999 9999999999987664433
No 427
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.52 E-value=2.4 Score=49.14 Aligned_cols=292 Identities=16% Similarity=0.076 Sum_probs=169.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHH
Q 002729 33 TDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRF-AECYGNMANAWKEKGDIDLAIRYYLVAIELRP-----NFADAWSN 106 (887)
Q Consensus 33 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 106 (887)
.+.+..-+..+...|...+|++..-.+ .+|.. +......+.-+...++..- +..+++.-| +++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence 556666667777788888887765433 12221 1122222333333343322 222222222 23455566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh-----HHHH
Q 002729 107 LASAYMRKGRLNEAAQCCRQALALNPL---------LVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF-----AIAW 172 (887)
Q Consensus 107 la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 172 (887)
.+.......++.+|..++.++...-+. .....-..+.+....|++++|++..+.++..-|.+ ....
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 677777889999999998888665332 12344556778888999999999999999876654 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----H--HHHHHHHHHHHHcCCh--HHHHHHHHHHHhh----CCC-hhHH
Q 002729 173 SNLAGLFMESGDLNRALQYYKEAVKLKPTF----P--DAYLNLGNVYKALGMP--QEAIMCYQRAVQT----RPN-AIAF 239 (887)
Q Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~--~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~----~p~-~~~~ 239 (887)
..++.+..-.|++++|..+...+.+..... - .+....+.++..+|+. .+....+...-.. .|. ....
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 778889999999999999988887763221 1 2334456777788833 3333333332221 222 1222
Q ss_pred hhHHHHHHHcCChHHHHHHHHHHHh----cCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hH------
Q 002729 240 GNLASTYYERGQADMAILYYKQAIG----CDPRFLE---AYNNLGNALKDVGRVDEAIQCYNQCLSLQPSH-PQ------ 305 (887)
Q Consensus 240 ~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~------ 305 (887)
...+.++...-+++.+..-..+.++ ..|.... .++.++.+....|++++|...+.++.....+. +.
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 2222222222225555444444442 2233222 23478999999999999999998887653222 11
Q ss_pred HHHhHHHHHHHcCChhHHHHHHHHH
Q 002729 306 ALTNLGNIYMEWNMLPAAASYYKAT 330 (887)
Q Consensus 306 ~~~~l~~~~~~~g~~~~A~~~~~~~ 330 (887)
+...........|+.++|.....+.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 1111222334578888887777663
No 428
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.51 E-value=0.34 Score=53.05 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=12.0
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 002729 140 NLGNLMKAQGLVQEAYSCYLE 160 (887)
Q Consensus 140 ~la~~~~~~g~~~~A~~~~~~ 160 (887)
.++..+.-.|++.+|.++|.+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 345555566666666555543
No 429
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=2.4 Score=48.50 Aligned_cols=411 Identities=11% Similarity=0.050 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHH
Q 002729 16 KQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWK---EKGDIDLAIRYYLV 92 (887)
Q Consensus 16 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~ 92 (887)
++=+.-++.-+..++.+......|...+...|+.++-...-.++.+..|..+..|.....-.. ..++-.++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 344555666666777888888999999999999998888888888888888887776555432 34677888899999
Q ss_pred HHhcCCCcHHHHHHHHHHHH-------HcCChHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHH
Q 002729 93 AIELRPNFADAWSNLASAYM-------RKGRLNEAAQCCRQALALNP-------LLVDAHSNLGNLMKAQGLVQEAYSCY 158 (887)
Q Consensus 93 al~~~p~~~~~~~~la~~~~-------~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (887)
++.-. +++..|...+.... ..++++.-...|.+++..-. .....+..+-..+...-..++-+.++
T Consensus 176 al~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~ 254 (881)
T KOG0128|consen 176 ALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALF 254 (881)
T ss_pred Hhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 98643 34555555554443 44678888888888876532 12334555555555555556667777
Q ss_pred HHHHhhCCChHHH----HHHHH--H-HHHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002729 159 LEALRIQPTFAIA----WSNLA--G-LFMESGDLNRALQYYKE-------AVKLKPTFPDAYLNLGNVYKALGMPQEAIM 224 (887)
Q Consensus 159 ~~al~~~p~~~~~----~~~la--~-~~~~~g~~~~A~~~~~~-------~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (887)
...+... -+..+ |.... . ......+++.|.+.+.+ .+...+.....|..+.......|..-.-..
T Consensus 255 ~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l 333 (881)
T KOG0128|consen 255 VRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQL 333 (881)
T ss_pred HHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 6666543 22111 11111 1 11223445555444333 333344444567777788888899888888
Q ss_pred HHHHHHhhCCC-hhHHhhHHHHH-HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCC
Q 002729 225 CYQRAVQTRPN-AIAFGNLASTY-YERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGR-VDEAIQCYNQCLSLQP 301 (887)
Q Consensus 225 ~~~~~~~~~p~-~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p 301 (887)
.++++....+. ...|...+... ..++-.+.+...+.+++...|-....|...-..+.+.+. ...-...+.+.+...-
T Consensus 334 ~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~ 413 (881)
T KOG0128|consen 334 IEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV 413 (881)
T ss_pred HHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 88888876554 44444443332 233445556677777777777776555544433333332 2233344444443211
Q ss_pred CChHHHHhHHHHHHHcC------ChhHHHHHHHHHH-------hc-cCCCchhHhhHHHHHH-HcCCHHHHHHHHHHHHh
Q 002729 302 SHPQALTNLGNIYMEWN------MLPAAASYYKATL-------AV-TTGLSAPFNNLAVIYK-QQGNYADAISCYNEVLR 366 (887)
Q Consensus 302 ~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-------~~-~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~ 366 (887)
..++........++ +++.-.+.|+.+. .. .......+...|.++. .+++.+.+..+.+..+.
T Consensus 414 ---~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 414 ---ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred ---HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 11111122222222 2333333343333 22 1112233444555544 46789999999988887
Q ss_pred cCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc-HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 002729 367 IDPLAAD-GLVNRGNTYKEIGRVTDAIQDYIRAITIR--PTM-AEAHANLASAYKDSGHVEAAIKSYKQ 431 (887)
Q Consensus 367 ~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 431 (887)
....+.. .|+.....-...|+...+..++++++... |++ -+++..+-......|.++.....-.+
T Consensus 491 y~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 491 YGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred CCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
Confidence 7665555 78888888888899999999888887653 432 23455555555566676665555444
No 430
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.45 E-value=0.0053 Score=39.97 Aligned_cols=32 Identities=41% Similarity=0.615 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
.+++.+|.+|..+|++++|.+.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=1.1 Score=44.38 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=40.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHHHHHhhCC--------CchhHHHHHHHHHHhcCCHHHHHHH
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNP--------LRTDNLLLLGAIYYQLHDYDMCIAR 55 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~ 55 (887)
+++|+...+.+++++|+..|.+++.... ....+...++..|...|++..--+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 5788999999999999999999987632 1245677888889988887654433
No 432
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.36 E-value=0.034 Score=46.73 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=67.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 5 LAHQMYKSGSYKQALEHSNSVYERNPLRT---DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 5 la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
+|..++.+||+-+|+++.+.++..++++. ..+...|.++.++. .+.+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHH---------
Confidence 57889999999999999999998887665 34455555554432 2222222222222
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALAL 130 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 130 (887)
-.++++|.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 23566677777777777777777776666666677777777666654
No 433
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.34 E-value=0.067 Score=55.89 Aligned_cols=301 Identities=14% Similarity=0.133 Sum_probs=181.0
Q ss_pred cceeeeecCCCCCChhHHhhhHHhhcCCCCC-cEEEEEecCCCCChHHHHHHHhhcCce-----EECC--CCC-------
Q 002729 536 RLRVGYVSSDFGNHPLSHLMGSVFGMHNKEN-VEVFCYALSPNDGTEWRQRTQSEAEHF-----VDVS--AMS------- 600 (887)
Q Consensus 536 ~lriGyvs~d~~~h~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~------- 600 (887)
.+||-.|++ .-|-..-+.+++..++... ||.++.++|+..+.++...+.....-. .++. +-+
T Consensus 3 ~~Kv~~I~G---TRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~ 79 (383)
T COG0381 3 MLKVLTIFG---TRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGN 79 (383)
T ss_pred ceEEEEEEe---cCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHH
Confidence 466777764 5777778889999888876 999999999988655555554444322 2222 111
Q ss_pred -HHHHHHHHHhCCCeEEEecCCcCCCCchhhhh------cCCCceEEeccccCCCCCCCcccEE------------EecC
Q 002729 601 -SDMIAKLINEDKIQILINLNGYTKGARNEIFA------MQPAPIQVSYMGFPGTTGASYIDYL------------VTDE 661 (887)
Q Consensus 601 -~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~------~r~apvq~~~~g~~~t~g~~~~d~~------------~~d~ 661 (887)
...+-+.+.+.++|+++-.. .+...++ +.-=|| ||-. -|+.+.|-+ +|+-
T Consensus 80 ~i~~~~~vl~~~kPD~VlVhG-----DT~t~lA~alaa~~~~IpV-----~HvE-AGlRt~~~~~PEE~NR~l~~~~S~~ 148 (383)
T COG0381 80 IIEGLSKVLEEEKPDLVLVHG-----DTNTTLAGALAAFYLKIPV-----GHVE-AGLRTGDLYFPEEINRRLTSHLSDL 148 (383)
T ss_pred HHHHHHHHHHhhCCCEEEEeC-----CcchHHHHHHHHHHhCCce-----EEEe-cccccCCCCCcHHHHHHHHHHhhhh
Confidence 14556777889999764322 2222222 122233 2222 233333322 3333
Q ss_pred ccCCCCcCC-------CCccceeecCCccccCCCccccccCCCCCCCCCCCC-CCCCCCcEEEEecCCCC---CCCHHHH
Q 002729 662 FVSPLRYAH-------IYSEKLVHVPHCYFVNDYKQKNMDVLDPNCQPKRSD-YGLPEDKFIFACFNQLY---KMDPEIF 730 (887)
Q Consensus 662 ~~~p~~~~~-------~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~r~~-~~l~~~~~~~~~~~~~~---k~~~~~~ 730 (887)
...|.+... ...+++.-.=++.+-.- ....... ......... ++.++..++..++.|-. +.-....
T Consensus 149 hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal-~~~~~~~--~~~~~~~~~~~~~~~~~~iLvT~HRreN~~~~~~~i~ 225 (383)
T COG0381 149 HFAPTEIARKNLLREGVPEKRIFVTGNTVIDAL-LNTRDRV--LEDSKILAKGLDDKDKKYILVTAHRRENVGEPLEEIC 225 (383)
T ss_pred hcCChHHHHHHHHHcCCCccceEEeCChHHHHH-HHHHhhh--ccchhhHHhhhccccCcEEEEEcchhhcccccHHHHH
Confidence 445544321 11112221111100000 0000000 000011111 44555568888888875 4466777
Q ss_pred HHHHHHHhhcCCceEEEecCChhhHHHHHHHH-HHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHH
Q 002729 731 NTWCNILRRVPNSALWLLRFPAAGEMRLRAYA-VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDIL 809 (887)
Q Consensus 731 ~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~-~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal 809 (887)
.+..+|+...|+..++..-.+. .++++.. ..++- .+||.+.+.+.+.+++.++..|-+.| -.+|.-.=||-
T Consensus 226 ~al~~i~~~~~~~~viyp~H~~---~~v~e~~~~~L~~-~~~v~li~pl~~~~f~~L~~~a~~il----tDSGgiqEEAp 297 (383)
T COG0381 226 EALREIAEEYPDVIVIYPVHPR---PRVRELVLKRLKN-VERVKLIDPLGYLDFHNLMKNAFLIL----TDSGGIQEEAP 297 (383)
T ss_pred HHHHHHHHhCCCceEEEeCCCC---hhhhHHHHHHhCC-CCcEEEeCCcchHHHHHHHHhceEEE----ecCCchhhhHH
Confidence 7788899999887776644332 3343333 45554 57899999999999999999998887 45577778999
Q ss_pred HhCCceeeeccc-chhhhhHHHHHHhcCCCCccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002729 810 WAGLPMITLPLE-KMATRVAGSLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTN 868 (887)
Q Consensus 810 ~~gvPvvt~~g~-~~~~r~~~~~l~~~g~~~~~~~~~~~~y~~~a~~l~~d~~~~~~~~~ 868 (887)
..|+||+++... .-++++.+ |-.- +|-.+.+.-++.+..+..|++..++|+.
T Consensus 298 ~lg~Pvl~lR~~TERPE~v~a------gt~~-lvg~~~~~i~~~~~~ll~~~~~~~~m~~ 350 (383)
T COG0381 298 SLGKPVLVLRDTTERPEGVEA------GTNI-LVGTDEENILDAATELLEDEEFYERMSN 350 (383)
T ss_pred hcCCcEEeeccCCCCccceec------CceE-EeCccHHHHHHHHHHHhhChHHHHHHhc
Confidence 999999988644 56677776 5555 7778889999999999999998887764
No 434
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.27 E-value=0.25 Score=49.65 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=145.4
Q ss_pred ecCCCCCChhHHhhhHHhhcCCCCCcEEEEEecCCCCChHHHHHHHhhcCceEECCCC---C-----------HHHHHHH
Q 002729 542 VSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM---S-----------SDMIAKL 607 (887)
Q Consensus 542 vs~d~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~ 607 (887)
|+-|..+.|..+|+..++..+.+.++||.+=+-.. +.+.+.++..--.+..+..- + .-.+.+.
T Consensus 3 VwiDI~n~~hvhfFk~lI~elekkG~ev~iT~rd~---~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki 79 (346)
T COG1817 3 VWIDIGNPPHVHFFKNLIWELEKKGHEVLITCRDF---GVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKI 79 (346)
T ss_pred EEEEcCCcchhhHHHHHHHHHHhCCeEEEEEEeec---CcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999987644221 23455555443333222211 1 2456889
Q ss_pred HHhCCCeEEEecCCcCCCCchhhhhcCCCceEEeccccCCCCCCC--------cccEEEecCccCCCCcCC----CCccc
Q 002729 608 INEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGAS--------YIDYLVTDEFVSPLRYAH----IYSEK 675 (887)
Q Consensus 608 i~~~~~dil~~~~~~~~~~~~~~~~~r~apvq~~~~g~~~t~g~~--------~~d~~~~d~~~~p~~~~~----~~~e~ 675 (887)
|.+.++||.+. -|+. .+|-....+|-|.-.-.+ .+-+=+++.++.|..... .+-.+
T Consensus 80 ~~~~kpdv~i~--~~s~----------~l~rvafgLg~psIi~~D~ehA~~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~ 147 (346)
T COG1817 80 IAEFKPDVAIG--KHSP----------ELPRVAFGLGIPSIIFVDNEHAEAQNKLTLPLADVIITPEAIDEEELLDFGAD 147 (346)
T ss_pred HhhcCCceEee--cCCc----------chhhHHhhcCCceEEecCChhHHHHhhcchhhhhheecccccchHHHHHhCCC
Confidence 99999999986 3331 122222223333211110 111113444455544433 12222
Q ss_pred ---eeecCCc-cccCCCccccccCCCCCCCCCCCCCCCCCC--cEE--EEecCCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 002729 676 ---LVHVPHC-YFVNDYKQKNMDVLDPNCQPKRSDYGLPED--KFI--FACFNQLYKMDPEIFNTWCNILRRVPNSALWL 747 (887)
Q Consensus 676 ---~~~lp~~-~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~--~~~--~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~ 747 (887)
+...++. ...+.+. + .|. +..-.++|+.++ +++ +.+.+..+=+-+.-+..-.++++..++--.++
T Consensus 148 p~~i~~~~giae~~~v~~-----f-~pd-~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~giV~ 220 (346)
T COG1817 148 PNKISGYNGIAELANVYG-----F-VPD-PEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYGIVL 220 (346)
T ss_pred ccceecccceeEEeeccc-----C-CCC-HHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHHHHHHHHhCcEEE
Confidence 3333331 1111110 1 111 234456788765 444 44444444333333444455555444433333
Q ss_pred ecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeee-cccchhhh
Q 002729 748 LRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITL-PLEKMATR 826 (887)
Q Consensus 748 ~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~-~g~~~~~r 826 (887)
+.... ..++.++... ++.. .-+..+++.++--+|+++ -.|||-.-||...|+|.|+. +|... -
T Consensus 221 ipr~~----~~~eife~~~-----n~i~-pk~~vD~l~Llyya~lvi----g~ggTMarEaAlLGtpaIs~~pGkll--~ 284 (346)
T COG1817 221 IPREK----EQAEIFEGYR-----NIII-PKKAVDTLSLLYYATLVI----GAGGTMAREAALLGTPAISCYPGKLL--A 284 (346)
T ss_pred ecCch----hHHHHHhhhc-----cccC-CcccccHHHHHhhhheee----cCCchHHHHHHHhCCceEEecCCccc--c
Confidence 32211 1233333221 1122 223456666666688876 56688889999999999975 44311 1
Q ss_pred hHHHHHHhcCCCCcccc-CCHHHHHHHHHHHhcCHH
Q 002729 827 VAGSLCLATGLGEEMIV-NSMKEYEERAVSLALDRQ 861 (887)
Q Consensus 827 ~~~~~l~~~g~~~~~~~-~~~~~y~~~a~~l~~d~~ 861 (887)
+ .-.+-..|+ +.- .|+.+-++.|+++..++.
T Consensus 285 v-dk~lie~G~---~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 285 V-DKYLIEKGL---LYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred c-cHHHHhcCc---eeecCCHHHHHHHHHHHhhchh
Confidence 1 235666666 343 788899999999998774
No 435
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.24 E-value=0.05 Score=56.62 Aligned_cols=164 Identities=19% Similarity=0.222 Sum_probs=100.3
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCC-----CCCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEE
Q 002729 699 NCQPKRSDYGLPEDKFIFACFNQL-----YKMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQII 773 (887)
Q Consensus 699 ~~~~~r~~~~l~~~~~~~~~~~~~-----~k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~ 773 (887)
.+...|+.+|++.+.-+++-+--. .++.|-+.++..++..+.|+.++++.-.++. ..+++..+.......-.++
T Consensus 174 ~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~-~~~~~~~~~~~~~~~~~~~ 252 (381)
T COG0763 174 DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK-YRRIIEEALKWEVAGLSLI 252 (381)
T ss_pred cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH-HHHHHHHHhhccccCceEE
Confidence 334478889998876665433222 3678889999888888999999998766555 3344444443333212233
Q ss_pred EcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCcee-eecccchhhhhHHHH--HHhcCCCCccccC------
Q 002729 774 FTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMI-TLPLEKMATRVAGSL--CLATGLGEEMIVN------ 844 (887)
Q Consensus 774 ~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvv-t~~g~~~~~r~~~~~--l~~~g~~~~~~~~------ 844 (887)
+.+. +-...+..||++| -.+||.++|++-+|+|.| +..-..+.-...--. +-.++||. +++.
T Consensus 253 ~~~~----~~~~a~~~aD~al----~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpN-Ii~~~~ivPE 323 (381)
T COG0763 253 LIDG----EKRKAFAAADAAL----AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPN-ILAGREIVPE 323 (381)
T ss_pred ecCc----hHHHHHHHhhHHH----HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchH-HhcCCccchH
Confidence 3332 2344567899998 678999999999999955 444333322222111 12234444 4433
Q ss_pred ------CHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 002729 845 ------SMKEYEERAVSLALDRQKLQALTNKLKS 872 (887)
Q Consensus 845 ------~~~~y~~~a~~l~~d~~~~~~~~~~~~~ 872 (887)
+++........+..|...++++.+..++
T Consensus 324 liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~ 357 (381)
T COG0763 324 LIQEDCTPENLARALEELLLNGDRREALKEKFRE 357 (381)
T ss_pred HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHH
Confidence 3566666666677788666666655443
No 436
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.22 E-value=0.31 Score=47.49 Aligned_cols=17 Identities=6% Similarity=0.300 Sum_probs=12.1
Q ss_pred cccceeeeecCCCCCCh
Q 002729 534 LRRLRVGYVSSDFGNHP 550 (887)
Q Consensus 534 ~~~lriGyvs~d~~~h~ 550 (887)
-.+++|-|+|..+.-.+
T Consensus 362 Yt~i~Ipfis~~Lnv~~ 378 (440)
T KOG1464|consen 362 YTNIGIPFISKELNVPE 378 (440)
T ss_pred ccccCchhhHhhcCCCH
Confidence 35688888888876543
No 437
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.18 E-value=3.7 Score=47.79 Aligned_cols=402 Identities=12% Similarity=0.002 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHH-
Q 002729 34 DNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG--DIDLAIRYYLVAIELRPNFADAWSNLASA- 110 (887)
Q Consensus 34 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~- 110 (887)
...+.-+....+.|++..+.+...++ ...|-.+ |..........+ .++ -+...++..|+.+.........
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~~--yl~y~~L~~~l~~~~~~----ev~~Fl~~~~~~P~~~~Lr~~~l 106 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLYP--YLEYRQLTQDLMNQPAV----QVTNFIRANPTLPPARSLQSRFV 106 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcHh--HHHHHHHHhccccCCHH----HHHHHHHHCCCCchHHHHHHHHH
Confidence 45567777788888888876665543 3333322 222222222222 333 3444455566655443333332
Q ss_pred --HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHH
Q 002729 111 --YMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRA 188 (887)
Q Consensus 111 --~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 188 (887)
+.+.+++..-+.++ ...|.+.......+......|+.++|.....++-......+.....+-..+.+.|.....
T Consensus 107 ~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 107 NELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence 23445555544422 234777788788888888899988887777776555444444444444444444433332
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHH-----------HH-cCChHHHHHHHHHHHhhCCC--hhHHhhHHHHHHHcCChHH
Q 002729 189 LQYYKEAVKLKPTFPDAYLNLGNVY-----------KA-LGMPQEAIMCYQRAVQTRPN--AIAFGNLASTYYERGQADM 254 (887)
Q Consensus 189 ~~~~~~~l~~~~~~~~~~~~l~~~~-----------~~-~g~~~~A~~~~~~~~~~~p~--~~~~~~la~~~~~~g~~~~ 254 (887)
...-+--+....++......+...+ .. ..+...+...+.. ..++ ......++..-....+.+.
T Consensus 183 d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~---~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 183 AYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART---TGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc---cCCChhhHHHHHHHHHHHHHhCHHH
Confidence 2111111111111111111111111 10 0111111111111 1112 1122223333344566677
Q ss_pred HHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHHHHHHHHH
Q 002729 255 AILYYKQAIGCDPRFL----EAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKAT 330 (887)
Q Consensus 255 A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 330 (887)
|...+.+......-.. .++..++.-....+...+|...+..+.... .+....-.........++++.+...+..+
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L 338 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARL 338 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhc
Confidence 8888876543332221 233444444444332566777776654332 23333444444555788888888777776
Q ss_pred HhccCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH---HHH-HHHHHHHHhcCCCcH
Q 002729 331 LAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRV---TDA-IQDYIRAITIRPTMA 406 (887)
Q Consensus 331 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---~~A-~~~~~~al~~~p~~~ 406 (887)
-..........+-+|..+...|+.++|...|+++.. +.+ .|-.++.- ++|.. ... ...-...+..
T Consensus 339 ~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~~~~~----- 407 (644)
T PRK11619 339 PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDSALTQ----- 407 (644)
T ss_pred CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH--HcCCCCCCCCCCCCchhhhhcc-----
Confidence 555555667778888888888999999999988754 222 22222211 12221 000 0000011111
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhhhcCChhhHhHHH
Q 002729 407 EAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWEDRDRMF 463 (887)
Q Consensus 407 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 463 (887)
.-....+..+...|+..+|...+..++.. .++.....++......|.+.-+....
T Consensus 408 ~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 408 GPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred ChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 12355677888999999999999988875 23445555555555556544444333
No 438
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.13 E-value=0.28 Score=44.70 Aligned_cols=81 Identities=25% Similarity=0.124 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 37 LLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGR 116 (887)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 116 (887)
......-...++.+++...+..+--+.|+.++.-..-|..+...|++.+|+.+++.+.+..|..+.+--.++.|+...|+
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33334444445555555555555555555555555555555555555555555555555555555444555555555544
Q ss_pred h
Q 002729 117 L 117 (887)
Q Consensus 117 ~ 117 (887)
.
T Consensus 94 ~ 94 (160)
T PF09613_consen 94 P 94 (160)
T ss_pred h
Confidence 3
No 439
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.10 E-value=0.028 Score=60.28 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=68.0
Q ss_pred CCCCCCC--CcEEEEecCC--CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCC
Q 002729 705 SDYGLPE--DKFIFACFNQ--LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAM 779 (887)
Q Consensus 705 ~~~~l~~--~~~~~~~~~~--~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~ 779 (887)
..++++. ..+++....+ ..|. ..+-+....+.+.. .+..+++.|.+.+ ++...+.... .....+.+.|..+
T Consensus 166 ~~~~~~~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-~~~~ivl~G~~~e-~~~~~~i~~~--~~~~~~~l~g~~s 241 (334)
T TIGR02195 166 AKFGLDTERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-QGYQVVLFGSAKD-HPAGNEIEAL--LPGELRNLAGETS 241 (334)
T ss_pred HHcCCCCCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-CCCEEEEEEChhh-HHHHHHHHHh--CCcccccCCCCCC
Confidence 3445543 3344443332 4454 44444444444433 3566777775543 3333332222 2223345889889
Q ss_pred cHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729 780 KQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 780 ~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
-.+..+.+..+|+++- .- +-.+==|-++|+|+|++-|++-+.+.+
T Consensus 242 L~el~ali~~a~l~I~--~D--SGp~HlAaA~~~P~i~lfG~t~p~~~~ 286 (334)
T TIGR02195 242 LDEAVDLIALAKAVVT--ND--SGLMHVAAALNRPLVALYGSTSPDFTP 286 (334)
T ss_pred HHHHHHHHHhCCEEEe--eC--CHHHHHHHHcCCCEEEEECCCChhhcC
Confidence 9999999999999982 12 222334678999999999998877643
No 440
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.07 E-value=0.32 Score=52.03 Aligned_cols=168 Identities=18% Similarity=0.045 Sum_probs=83.2
Q ss_pred HhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HH
Q 002729 26 YERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF---AD 102 (887)
Q Consensus 26 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 102 (887)
+..+|.+.+++..++.++..+|+.+.|.+.+++++-.........+.....-...|. +.--| ..+.| -.
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~-----~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDY-----RRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCC-----ccccchHHHH
Confidence 456777788888888888888888888887777753211000000000000000000 00000 01112 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHHcCChHHHHHHHHHHHhhCCC-----hHHHHHHH
Q 002729 103 AWSNLASAYMRKGRLNEAAQCCRQALALNPL-LVDAHSNLG-NLMKAQGLVQEAYSCYLEALRIQPT-----FAIAWSNL 175 (887)
Q Consensus 103 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l 175 (887)
+.......+.+.|-+..|.++.+-.+.++|. |+-...... ....+.++++--++.++........ -+...+..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 3444555566666666666666666666665 444333322 3334455555555555443331111 12334555
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 002729 176 AGLFMESGDL---------------NRALQYYKEAVKLKPT 201 (887)
Q Consensus 176 a~~~~~~g~~---------------~~A~~~~~~~l~~~~~ 201 (887)
+.++...++. ++|...+.+++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 5555556555 6777777777776654
No 441
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.07 E-value=0.058 Score=58.10 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=66.6
Q ss_pred CCCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHH
Q 002729 708 GLPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQ-IIFTDVAMKQEHI 784 (887)
Q Consensus 708 ~l~~~~~~~~~~~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r-~~~~~~~~~~~~~ 784 (887)
|+..+.+++....+ ..|. ..+-+...++-+.. .+..+++.|.+...+..+.+.+.+. ....+ +.+.|.++-.+..
T Consensus 178 ~~~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~-~~~~ivl~g~p~~~e~~~~~~i~~~-~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 178 GVGQNYIVIQPTSRWFFKCWDNDRFSALIDALHA-RGYEVVLTSGPDKDELAMVNEIAQG-CQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred CCCCCEEEEeCCCCccccCCCHHHHHHHHHHHHh-CCCeEEEecCCCHHHHHHHHHHHhh-CCCCcccccCCCCCHHHHH
Confidence 34445555554443 3344 33333333333333 3566777775432222222333222 22334 5578999999999
Q ss_pred HhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729 785 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 785 ~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
+.+..+|+++-. - +-.+==|-++|+|+|++-|++-..+.+
T Consensus 256 ali~~a~l~Vs~--D--SGp~HlAaA~g~p~v~Lfgpt~p~~~~ 295 (344)
T TIGR02201 256 ALIDHARLFIGV--D--SVPMHMAAALGTPLVALFGPSKHIFWR 295 (344)
T ss_pred HHHHhCCEEEec--C--CHHHHHHHHcCCCEEEEECCCCccccc
Confidence 999999999822 2 223334778999999999987766554
No 442
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.06 E-value=0.41 Score=46.71 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 46 LHDYDMCIARNEEALRLEPRF----AECYGNMANAWKEKGDIDLAIRYYLVAIE 95 (887)
Q Consensus 46 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 95 (887)
..+.++|+..|++++++.+.. ..++..+..+++++|++++-...|.+++.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 346778888888888777654 34566677777777777777777777654
No 443
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.03 E-value=0.049 Score=58.83 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCCCCcEEEEecCC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHH
Q 002729 708 GLPEDKFIFACFNQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIR 785 (887)
Q Consensus 708 ~l~~~~~~~~~~~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~ 785 (887)
|++...+++....+ ..|. .++-+....+.|.. .+..+++.|.+...+....+.+.+..-.+..+.+.|.++-.+..+
T Consensus 180 ~~~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~a 258 (352)
T PRK10422 180 GVTQNYVVIQPTARQIFKCWDNDKFSAVIDALQA-RGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGA 258 (352)
T ss_pred CCCCCeEEEecCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHH
Confidence 44445555543333 3455 44444444444433 356677776543212222222322211123466889999999999
Q ss_pred hccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729 786 RSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 786 ~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
.+..||+++ -|-+-.+==|-++|+|||++-|++-..+.+
T Consensus 259 li~~a~l~v----~nDSGp~HlAaA~g~P~v~lfGpt~p~~~~ 297 (352)
T PRK10422 259 LIDHAQLFI----GVDSAPAHIAAAVNTPLICLFGATDHIFWR 297 (352)
T ss_pred HHHhCCEEE----ecCCHHHHHHHHcCCCEEEEECCCCccccC
Confidence 999999998 222223334668899999999998776654
No 444
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.02 E-value=0.012 Score=38.28 Aligned_cols=30 Identities=23% Similarity=0.602 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (887)
+++.+|.++..+|++++|++.|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455666666666666666666666666555
No 445
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.99 E-value=3 Score=45.01 Aligned_cols=101 Identities=15% Similarity=0.092 Sum_probs=79.7
Q ss_pred CCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002729 335 TGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKE--IGRVTDAIQDYIRAITIRPTMAEAHANL 412 (887)
Q Consensus 335 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 412 (887)
++....-..+-..+.+.|-+.+|.+.|.+...+.|.+...+-.+...-.. .-+...+.++|..++.....+++.|...
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 44455556677778888999999999999998888877766655544332 2347888899999998888899999988
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 002729 413 ASAYKDSGHVEAAIKSYKQALLL 435 (887)
Q Consensus 413 a~~~~~~g~~~~A~~~~~~al~~ 435 (887)
-..-...|..+.+-.+|.+|++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 88888999999999999888874
No 446
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=4.2 Score=46.70 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=58.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCh
Q 002729 40 GAIYYQLHDYDMCIARNEEALRLEPR-FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-RPNFADAWSNLASAYMRKGRL 117 (887)
Q Consensus 40 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~ 117 (887)
...+++..-|+-|+.+.+.- ..+++ -.......|..++..|++++|...|-+.+.. +|.. ...-|....+.
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~------Vi~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE------VIKKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH------HHHHhcCHHHH
Confidence 34455666666666655432 12222 2455666677777777777777777776653 2221 11122333334
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 002729 118 NEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYS 156 (887)
Q Consensus 118 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 156 (887)
.+-..+++...+..-.+.+--..|-.+|.++++.++-.+
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHH
Confidence 444455555555554444545556667777766655433
No 447
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.86 E-value=0.0082 Score=39.65 Aligned_cols=27 Identities=44% Similarity=0.647 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 002729 409 HANLASAYKDSGHVEAAIKSYKQALLL 435 (887)
Q Consensus 409 ~~~la~~~~~~g~~~~A~~~~~~al~~ 435 (887)
+..||.+|.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556667777777777777777775543
No 448
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.95 Score=41.35 Aligned_cols=120 Identities=16% Similarity=0.052 Sum_probs=58.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCh
Q 002729 44 YQLHDYDMCIARNEEALRLEPRF--AECYGNMANAWKEKGDIDLAIRYYLVAIELRPNF----ADAWSNLASAYMRKGRL 117 (887)
Q Consensus 44 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~ 117 (887)
.+.+..++|+..|..+-+.+-.. .-+.+..+.+..+.|+-..|+..|..+-...+.- ..+...-+..+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555554433222 2344455555555566666666665554432220 11233334444555555
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729 118 NEAAQCCRQALA-LNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (887)
Q Consensus 118 ~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (887)
++.....+..-. .+|-...+...||...++.|++.+|.+.|.++..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555444443321 1233334455556666666666666666665554
No 449
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.86 E-value=0.014 Score=37.61 Aligned_cols=31 Identities=29% Similarity=0.427 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
No 450
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.79 E-value=3.6 Score=44.39 Aligned_cols=226 Identities=13% Similarity=0.069 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002729 66 FAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (887)
Q Consensus 66 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (887)
+...+..+..++.....+.-....+.+++....+ ..++..++++|... ..++-..++++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3444455555555555555555666666665433 55666677777666 445566666666666666666666666666
Q ss_pred HHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 002729 146 KAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMC 225 (887)
Q Consensus 146 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 225 (887)
.+ ++.+.+...|.+++...- -..+...-.+.+++..+.-+++.+....+
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI--------------~~~q~~~i~evWeKL~~~i~dD~D~fl~l---------------- 191 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFI--------------PRRQNAAIKEVWEKLPELIGDDKDFFLRL---------------- 191 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhc--------------chhhhhhHHHHHHHHHHhccccHHHHHHH----------------
Confidence 55 666666666666553211 01112222344444444444443332222
Q ss_pred HHHHHhhCCC---hhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002729 226 YQRAVQTRPN---AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPS 302 (887)
Q Consensus 226 ~~~~~~~~p~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (887)
..+..+.... ..++..+-.-|....++++|++.+...++.+..+..+.-.+...+...-+ +..
T Consensus 192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~--------------~~~ 257 (711)
T COG1747 192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYR--------------GHS 257 (711)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhc--------------cch
Confidence 1121111111 22333333456667788888888888888777777666555544433110 011
Q ss_pred ChHHHHhHHHHHHHcCChhHHHHHHHHHHhccCCCc
Q 002729 303 HPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLS 338 (887)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 338 (887)
+.+-|....++-..-.++.++..-|++.+..+..+-
T Consensus 258 ~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 258 QLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence 111122222333334455666666666666655543
No 451
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.78 E-value=0.19 Score=52.19 Aligned_cols=96 Identities=19% Similarity=0.113 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhH
Q 002729 726 DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTG 805 (887)
Q Consensus 726 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~ 805 (887)
..+.+....+.+... +..+++.|.+.. .+..++.....+ ...-+.+.|..+..+..+.+..+|+++.+= + |+.-
T Consensus 138 ~~~~~~~l~~~l~~~-~~~ivl~g~~~e-~~~~~~i~~~~~-~~~~~~~~~~~~l~e~~~li~~~~l~I~~D--s-g~~H 211 (279)
T cd03789 138 PAERFAALADRLLAR-GARVVLTGGPAE-RELAEEIAAALG-GPRVVNLAGKTSLRELAALLARADLVVTND--S-GPMH 211 (279)
T ss_pred CHHHHHHHHHHHHHC-CCEEEEEechhh-HHHHHHHHHhcC-CCccccCcCCCCHHHHHHHHHhCCEEEeeC--C-HHHH
Confidence 444444444444444 677777775443 444444333333 233456788888899999999999998332 2 2222
Q ss_pred HHHHHhCCceeeecccchhhhhH
Q 002729 806 TDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 806 ~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
=|.++|+|+|++-|.+-..+.+
T Consensus 212 -lA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 212 -LAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred -HHHHcCCCEEEEECCCCccccC
Confidence 3358899999999988877753
No 452
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=1.1 Score=40.92 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=80.5
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----hhHHhhHHHHHHHcCCh
Q 002729 180 MESGDLNRALQYYKEAVKLKPTFP--DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-----AIAFGNLASTYYERGQA 252 (887)
Q Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~la~~~~~~g~~ 252 (887)
.+.++.++|+..|...-+.+-... -+....+.+....|+...|+..|.++-...+. ..+...-+..+...|.|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345666777777776655443322 24556677777778888888888777665443 22334445566677777
Q ss_pred HHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHH
Q 002729 253 DMAILYYKQAI-GCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGN 312 (887)
Q Consensus 253 ~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 312 (887)
++.....+..- ..+|-...+...||..-.+.|++.+|.+.|.++.. +...+....+.+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 77666655543 33444455666777777777888888887777665 3333444333333
No 453
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.69 E-value=0.58 Score=50.07 Aligned_cols=127 Identities=17% Similarity=0.076 Sum_probs=60.9
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCh---HH
Q 002729 94 IELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTF---AI 170 (887)
Q Consensus 94 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~ 170 (887)
++.+|-+.+++..++.++..+|+.+.|.+++++++-.........+..-..-...|+- .--| ..+.| ..
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~---rL~~-----~~~eNR~ffl 104 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNC---RLDY-----RRPENRQFFL 104 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc---ccCC-----ccccchHHHH
Confidence 3456777777777777777777777777777766532110000000000000000000 0000 01112 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHcCChHHHHHHHHH
Q 002729 171 AWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNV-YKALGMPQEAIMCYQR 228 (887)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 228 (887)
+.......+.+.|-+..|.++.+-++.++|. |+-......+. ..+.++++--++.++.
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 4445566666777777777777777777776 55533333333 3444555544444443
No 454
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.46 Score=51.49 Aligned_cols=88 Identities=10% Similarity=-0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 18 ALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----FAECYGNMANAWKEKGDIDLAIRYYLVA 93 (887)
Q Consensus 18 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (887)
..+.+....+..|+++...+..+..+...|+.+.|+..++..++ +. ..-.++.+|.++.-+.+|..|...+...
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33344444445566666666666666666666666666665554 21 1234555666666666666666666666
Q ss_pred HhcCCCcHHHHHHH
Q 002729 94 IELRPNFADAWSNL 107 (887)
Q Consensus 94 l~~~p~~~~~~~~l 107 (887)
.+.+.-..-.|..+
T Consensus 330 ~desdWS~a~Y~Yf 343 (546)
T KOG3783|consen 330 RDESDWSHAFYTYF 343 (546)
T ss_pred HhhhhhhHHHHHHH
Confidence 55544333333333
No 455
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.64 E-value=0.12 Score=58.98 Aligned_cols=103 Identities=13% Similarity=0.301 Sum_probs=73.0
Q ss_pred CcEEEEecCCCC---CCCHHHHHHHHHHHhhcCCce-EEEecCChhhHHHHHHHHHHcCC---CCCcEEEcCCCCcHHHH
Q 002729 712 DKFIFACFNQLY---KMDPEIFNTWCNILRRVPNSA-LWLLRFPAAGEMRLRAYAVAQGV---QPDQIIFTDVAMKQEHI 784 (887)
Q Consensus 712 ~~~~~~~~~~~~---k~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~l~~~~~~~g~---~~~r~~~~~~~~~~~~~ 784 (887)
..++|.||+... .+..+.....+..+...|+.. +|......... -..|+ ....|++.++.|..+.+
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~-------~~~~~~~~~~~nV~~~~W~PQ~~ll 349 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIY-------FPEGLPNRGRGNVVLSKWAPQNDLL 349 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchh-------hhhcCCCCCcCceEEecCCCcHHHh
Confidence 368888999887 799999999999998886664 67665433211 12233 23458999999998877
Q ss_pred HhccCCcEEecCCCCCCchhHHHHHHhCCceeeec--ccchh
Q 002729 785 RRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLP--LEKMA 824 (887)
Q Consensus 785 ~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~--g~~~~ 824 (887)
.....+..|+ ..+|=++++|+++.|||+|++| |+.+.
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~ 388 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPL 388 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchh
Confidence 3344466665 4677677799999999998654 55543
No 456
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=95.63 E-value=0.076 Score=57.29 Aligned_cols=111 Identities=7% Similarity=-0.100 Sum_probs=67.0
Q ss_pred CcEEEEecCC--CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCC-CCc-EEEcCCCCcHHHHHh
Q 002729 712 DKFIFACFNQ--LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQ-PDQ-IIFTDVAMKQEHIRR 786 (887)
Q Consensus 712 ~~~~~~~~~~--~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~-~~r-~~~~~~~~~~~~~~~ 786 (887)
..+++....+ ..|. .++-+...++-+.. .+..+++.|.+.+ ++...+.....+-. ..+ +.+.|.++-.+..+.
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~-~~~~vvl~Gg~~e-~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLID-EGYQVVLFGSAKD-HEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHH-CCCeEEEEeCHHh-HHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 4455655443 3454 45544444443432 3566777775433 44333333333211 123 567888888999999
Q ss_pred ccCCcEEecCCCCCCchhHHHHHHhCCceeeecccchhhhhH
Q 002729 787 SSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVA 828 (887)
Q Consensus 787 ~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~r~~ 828 (887)
+..||+++ -|-+-.+==|-++|+|||++-|++.+.+.+
T Consensus 259 i~~a~l~I----~nDTGp~HlAaA~g~P~valfGpt~p~~~~ 296 (348)
T PRK10916 259 IAACKAIV----TNDSGLMHVAAALNRPLVALYGPSSPDFTP 296 (348)
T ss_pred HHhCCEEE----ecCChHHHHHHHhCCCEEEEECCCCccccC
Confidence 99999998 222223334788999999999988766554
No 457
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.60 E-value=0.48 Score=51.95 Aligned_cols=226 Identities=15% Similarity=0.099 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh------------CC-CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----c
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYER------------NP-LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPR----F 66 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~------------~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~ 66 (887)
.+|...+..=+++-|.+.|.++-.. .. ....--..++..+...|++.+|.++|.+.-..+.. .
T Consensus 590 ~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT 669 (1081)
T KOG1538|consen 590 ELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT 669 (1081)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH
Confidence 4556666666666666666554211 11 11122345677778888888888888764221100 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCChHHHHHHHH----------HHHHhCCCC
Q 002729 67 AECYGNMANAWKEKGDIDLAIRYYLVAIEL--RPNFADAWSNLASAYMRKGRLNEAAQCCR----------QALALNPLL 134 (887)
Q Consensus 67 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~----------~~l~~~p~~ 134 (887)
..-.+..++-+...|.-++-....++-.+- +-+.+ ..-+..+...|+.++|+.+.- -.-+++...
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP---kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP---KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc---HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 111234455555555555444444332211 11112 123555666777777765431 122233444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002729 135 VDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYK 214 (887)
Q Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 214 (887)
.+.+..++..+.+...+.-|.++|.++-. ...+.++....+++.+|..+.++.-+.- +++++..++.+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence 55566666666666666667666666432 1234556667777777777666543322 346677777777
Q ss_pred HcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHH
Q 002729 215 ALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAI 263 (887)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l 263 (887)
+..++++|.+.|.++ |+-.+|...+++.-
T Consensus 816 E~DrFeEAqkAfhkA--------------------Gr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA--------------------GRQREAVQVLEQLT 844 (1081)
T ss_pred hhhhHHHHHHHHHHh--------------------cchHHHHHHHHHhh
Confidence 777777777766554 55566666666553
No 458
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.57 E-value=0.021 Score=36.65 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002729 37 LLLGAIYYQLHDYDMCIARNEEALRLEP 64 (887)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p 64 (887)
+.+|.++.+.|++++|++.|+++++..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344444444444444444444443333
No 459
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.48 E-value=0.13 Score=42.28 Aligned_cols=64 Identities=22% Similarity=0.257 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--hHHHHHHHHHhhhcCC
Q 002729 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDF--PEATCNLLHTLQCVCS 455 (887)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~ 455 (887)
+..+++.++.+|++..+.+.++..+...|++++|++.+-.+++.++++ ..+...++..+...|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445566666667777777777777777777777777777776666544 4445555555554444
No 460
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=3.2 Score=42.35 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=104.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----C--CCChHHHHhHHHHHHHcCChhHHHHHHHHHHhcc-----CCCchh--
Q 002729 274 NNLGNALKDVGRVDEAIQCYNQCLSL----Q--PSHPQALTNLGNIYMEWNMLPAAASYYKATLAVT-----TGLSAP-- 340 (887)
Q Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~-- 340 (887)
..++.+|...++|.+|+......++. + +.-.+++..-...|....+..+|...+..+.... |....+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 45677888888888888777666543 2 1123455556677778888888887777665432 221111
Q ss_pred HhhHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHH---HHHHHHHHHHcCCHHHHHHHH--HHHHhcCCCcHHHHHHH
Q 002729 341 FNNLAVIYKQQGNYADAISCYNEVLRIDP---LAADG---LVNRGNTYKEIGRVTDAIQDY--IRAITIRPTMAEAHANL 412 (887)
Q Consensus 341 ~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~---~~~l~~~~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~l 412 (887)
-..-|..+....+|.-|..+|-++++-.. ++..+ +-.+-.|-...+..++-...+ +.+++....+.++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 11224555566889999999999887532 22333 333333444456666544443 45566667778899999
Q ss_pred HHHHHhC--CCHHHHHHHHHHHHHcCC
Q 002729 413 ASAYKDS--GHVEAAIKSYKQALLLRP 437 (887)
Q Consensus 413 a~~~~~~--g~~~~A~~~~~~al~~~p 437 (887)
+.++.+. .+++.|+..|+.=+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 9988774 588888888888776654
No 461
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.33 E-value=0.058 Score=53.36 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=56.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Q 002729 380 NTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (887)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (887)
.-..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+-.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 33456788888888888888888888888888888888888888888899899888888888776643
No 462
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.25 E-value=0.72 Score=41.24 Aligned_cols=77 Identities=16% Similarity=0.033 Sum_probs=43.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002729 6 AHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
.......++.+++..++..+--..|+.++.-..-|..+...|+|.+|+.+++...+..+..+...-.++.|+..+||
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 33344455566666666655555566666666666666666666666666666555555555555555555555444
No 463
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=3.6 Score=40.88 Aligned_cols=197 Identities=13% Similarity=0.058 Sum_probs=106.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHH
Q 002729 37 LLLGAIYYQLHDYDMCIARNEEALRLEPR--------FAECYGNMANAWKEKGDIDLAIRYYLVAIEL-----RPNFADA 103 (887)
Q Consensus 37 ~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 103 (887)
..+++-..+.+++++|+..|.+.+...-. ...+...++..|...|++..-.+.....-+. .|.....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 55677788889999999999999876321 2456788999999999887644444332221 1222222
Q ss_pred HHHHHHHHH-HcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCChHH
Q 002729 104 WSNLASAYM-RKGRLNEAAQCCRQALALNPLL------VDAHSNLGNLMKAQGLVQEAYSCYLEALRI------QPTFAI 170 (887)
Q Consensus 104 ~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 170 (887)
...+..-+- ....++.-+..+...++..... ...-..++.++++.|+|.+|+....-.+.. .++-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 222222221 1233444444444444332111 112234566677777777777666544431 233344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002729 171 AWSNLAGLFMESGDLNRALQYYKEAVKL-----KPTFPDAY--LNLGNVYKALGMPQEAIMCYQRAVQTR 233 (887)
Q Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 233 (887)
.+..-..+|....+..++...+..+... .|....+. ..-|...+...+|..|..+|-++++-.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 4555556666666666666655554332 12211111 222344455566777777777766643
No 464
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.20 E-value=0.057 Score=53.42 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=53.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002729 347 IYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLAS 414 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 414 (887)
-..+.|+.++|..+|+.++++.|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+.
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34567888888888888888888888888888888888888888888888888888888777665544
No 465
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.12 E-value=1.1 Score=40.93 Aligned_cols=94 Identities=16% Similarity=0.033 Sum_probs=65.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 002729 343 NLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 422 (887)
Q Consensus 343 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 422 (887)
.+..+-...++.+++..++..+--+.|..+..-..-|+++...|++.+|+..++.+.+..|..+.+.-.++.|+..+|+.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 34444556667777777777777777887777777788888888888888888887777777777777777777777764
Q ss_pred HHHHHHHHHHHHcCC
Q 002729 423 EAAIKSYKQALLLRP 437 (887)
Q Consensus 423 ~~A~~~~~~al~~~p 437 (887)
+ =..+-.++++.++
T Consensus 95 ~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 S-WRRYADEVLESGA 108 (160)
T ss_pred H-HHHHHHHHHhcCC
Confidence 3 2223344555544
No 466
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.03 E-value=0.2 Score=42.22 Aligned_cols=103 Identities=10% Similarity=0.022 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002729 39 LGAIYYQLHDYDMCIARNEEALRLEPRFAE---CYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKG 115 (887)
Q Consensus 39 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 115 (887)
++..++..|++-+|+++.+..+...+++.. .+...|.++.+ .+.+.+..+...-+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHH---------
Confidence 456778889999999999988888776653 33344444332 222222222322222
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002729 116 RLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI 164 (887)
Q Consensus 116 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (887)
-.+++.|.++..+.|.....++.+|.-+.....|+++..-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 24678889999999999999999999888888899999998888875
No 467
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.95 E-value=0.25 Score=40.69 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhCCCHH
Q 002729 358 ISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTM--AEAHANLASAYKDSGHVE 423 (887)
Q Consensus 358 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 423 (887)
+..+++.++.+|++..+.+.++..+...|++++|++.+..+++.+++. ..+...+..++...|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 455677777788888888888888888888888888888887776553 445555555555555433
No 468
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.86 E-value=0.12 Score=37.34 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCcHH
Q 002729 36 LLLLGAIYYQLHDYDMCIARNEEALRLEPRFAE 68 (887)
Q Consensus 36 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 68 (887)
++.+|..+++.|+|++|.++.+.+++..|++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 344444444444444444444444444444433
No 469
>PRK10941 hypothetical protein; Provisional
Probab=94.86 E-value=0.25 Score=50.12 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=43.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002729 342 NNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEA 408 (887)
Q Consensus 342 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 408 (887)
.++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3445556666666666666666666666666666666666666666666666666666666665544
No 470
>PRK10941 hypothetical protein; Provisional
Probab=94.81 E-value=0.18 Score=51.11 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (887)
.+.++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 5567778899999999999999999999999999999999999999999999999999999999998764
No 471
>PF13041 PPR_2: PPR repeat family
Probab=94.76 E-value=0.018 Score=41.47 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhhhcCChhhHhHHHHHHHHHHHHHhccCCCCCCCCcccccCcC
Q 002729 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPI 492 (887)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 492 (887)
...++.++..+...|++++|.++|+++ .+.|+.||..+|..++.++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M-------~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEM-------KKRGIKPDSYTYNILINGL 48 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHH
Confidence 456777788888877766666555544 4478999999888776554
No 472
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=94.67 E-value=0.42 Score=54.77 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHh--hc--CCceEEEecCChhh-------HHHHHHHHHHcCCCCCcEEEcC
Q 002729 710 PEDKFIFACFNQL--YKMDPEIFNTWCNILR--RV--PNSALWLLRFPAAG-------EMRLRAYAVAQGVQPDQIIFTD 776 (887)
Q Consensus 710 ~~~~~~~~~~~~~--~k~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~-------~~~l~~~~~~~g~~~~r~~~~~ 776 (887)
.++.+++|...|+ +|-.+-++....++++ .. .+..+++.|.+... ...+...++.-.+ ++||+|..
T Consensus 386 dpd~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~ 464 (601)
T TIGR02094 386 DPDVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLE 464 (601)
T ss_pred CCCCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEc
Confidence 3566788888887 5888888888777764 32 24678887754321 2334444443334 67999987
Q ss_pred CCCcHHHHHhccCCcEEec-CCC-CCC-chhHHHHHHhCCceeeecccchhh
Q 002729 777 VAMKQEHIRRSSLADLFLD-TPL-CNA-HTTGTDILWAGLPMITLPLEKMAT 825 (887)
Q Consensus 777 ~~~~~~~~~~~~~~d~~ld-~~~-~~g-~~t~~eal~~gvPvvt~~g~~~~~ 825 (887)
--.-.---..++.+||+|- |+. ++. ||+-+=||.-|++.+|.....+.+
T Consensus 465 ~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E 516 (601)
T TIGR02094 465 NYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGE 516 (601)
T ss_pred CCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccc
Confidence 4432222235899999999 753 776 999999999999999887644443
No 473
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.64 E-value=0.061 Score=35.43 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=12.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002729 375 LVNRGNTYKEIGRVTDAIQDYIRAI 399 (887)
Q Consensus 375 ~~~l~~~~~~~g~~~~A~~~~~~al 399 (887)
+..+|.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 474
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.64 E-value=0.12 Score=37.28 Aligned_cols=41 Identities=27% Similarity=0.278 Sum_probs=34.0
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhHHHHHHHH
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAI 42 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 42 (887)
++.+|..+++.|+|++|.+..+.+++.+|++.++......+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 47789999999999999999999999999998877665543
No 475
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=6.1 Score=40.45 Aligned_cols=162 Identities=14% Similarity=0.058 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh----C--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH--H
Q 002729 139 SNLGNLMKAQGLVQEAYSCYLEALRI----Q--PTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLK-----PTFPD--A 205 (887)
Q Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~--~ 205 (887)
..++.+|...++|.+|+......++. + +.-.+++..-...|....+..+|...+..+.... |.... .
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 34556666677777776665544432 1 1122334444555666666666666665554321 11111 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------hhHHhhHHHHHHHcCChHHHHHHHH--HHHhcCCCcHHHHHHH
Q 002729 206 YLNLGNVYKALGMPQEAIMCYQRAVQTRPN-------AIAFGNLASTYYERGQADMAILYYK--QAIGCDPRFLEAYNNL 276 (887)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~l 276 (887)
-..-|..+....+|..|..+|-++++-... ..++..+..+-...+..++...++. .+++......++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 122244445556667777777666664322 1122222233333444444333332 2333344445555555
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHhcC
Q 002729 277 GNALKDV--GRVDEAIQCYNQCLSLQ 300 (887)
Q Consensus 277 a~~~~~~--g~~~~A~~~~~~al~~~ 300 (887)
+.++.+. .+|+.|+..|+.-+..+
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D 317 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAED 317 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcC
Confidence 5555432 45555655555544433
No 476
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=12 Score=43.15 Aligned_cols=245 Identities=11% Similarity=0.080 Sum_probs=135.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCC-chhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Q 002729 6 AHQMYKSGSYKQALEHSNSVYERNPL-RTDNLLLLGAIYYQLHDYDMCIARNEEALRLE-PRFAECYGNMANAWKEKGDI 83 (887)
Q Consensus 6 a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 83 (887)
...+++..-|+-|+.+.++- ..+++ -.......|.-++++|++++|...|-+.+..- |...- .-+......
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi------~kfLdaq~I 413 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVI------KKFLDAQRI 413 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHH------HHhcCHHHH
Confidence 45677888888898887653 22222 24566778899999999999999999988643 32211 112223333
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002729 84 DLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALR 163 (887)
Q Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 163 (887)
.+-..+++...+..-.+.+--..|..+|.+.++.++-.++.++.- .+.-.. -.-..-.++.+.+-.++|..+..+.-.
T Consensus 414 knLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~f-d~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFF-DVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceee-eHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 344455555555554455556678889999999887766655432 110000 011222445555556666554444321
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC---hh--
Q 002729 164 IQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTF-PDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN---AI-- 237 (887)
Q Consensus 164 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~-- 237 (887)
+.. .+-.++...++|++|++++..+ .+.. .......|..+.. ..+++-...+-+....... ..
T Consensus 492 ----he~---vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~~t~~~~~~~~~~~ 560 (933)
T KOG2114|consen 492 ----HEW---VLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLE-HDPEETMKILIELITELNSQGKGKSL 560 (933)
T ss_pred ----CHH---HHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHh-hChHHHHHHHHHHHhhcCCCCCCchh
Confidence 222 2334456678899999988764 2221 2244455555554 3445555555444442211 11
Q ss_pred --HHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 002729 238 --AFGNLASTYYERGQADMAILYYKQAIGCDPRFL 270 (887)
Q Consensus 238 --~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 270 (887)
.-..+-.+..-.+++..-..+++.+.+..|+..
T Consensus 561 s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~ 595 (933)
T KOG2114|consen 561 SNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSE 595 (933)
T ss_pred hcCccchhheeeeccCHHHHHHHHHHHHhcCCCch
Confidence 111222333445666666666666666666554
No 477
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=94.18 E-value=1 Score=46.53 Aligned_cols=122 Identities=8% Similarity=-0.097 Sum_probs=80.3
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHhhcCCceEEEe-cCChh---hHHHHHHHHHHcCCCCCcEE-EcCCCCcHHHHHhc
Q 002729 713 KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL-RFPAA---GEMRLRAYAVAQGVQPDQII-FTDVAMKQEHIRRS 787 (887)
Q Consensus 713 ~~~~~~~~~~~k~~~~~~~~~~~il~~~p~~~l~~~-~~~~~---~~~~l~~~~~~~g~~~~r~~-~~~~~~~~~~~~~~ 787 (887)
.+..|.-+.+.-.|-+.++...+- -..+.++++. |.|.. -.+.+.+...+.-- .+++. +...+|.+||++.+
T Consensus 187 tILvGNSgd~sNnHieaL~~L~~~--~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~-~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 187 TILVGNSGDPSNNHIEALEALKQQ--FGDDVKIIVPLSYGANNQAYIQQVIQAGKELFG-AENFQILTEFMPFDEYLALL 263 (360)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHh--cCCCeEEEEECCCCCchHHHHHHHHHHHHHhcC-ccceeEhhhhCCHHHHHHHH
Confidence 355666666666777777655432 2345666553 44432 23455666655533 46665 46789999999999
Q ss_pred cCCcEEecCCCCCC-chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCCcccc
Q 002729 788 SLADLFLDTPLCNA-HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMIV 843 (887)
Q Consensus 788 ~~~d~~ld~~~~~g-~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~~~~~ 843 (887)
..||++.-.+-=-. --|++=.|++|+||+-....++-. .|...|+|= +..
T Consensus 264 ~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~np~~~-----~l~~~~ipV-lf~ 314 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRDNPFWQ-----DLKEQGIPV-LFY 314 (360)
T ss_pred HhCCEEEEeechhhhHhHHHHHHHcCCeEEEecCChHHH-----HHHhCCCeE-Eec
Confidence 99999997754444 446788999999999766655543 577778876 444
No 478
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=93.98 E-value=0.5 Score=55.46 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCC--CCCCHHHHHHHHHHHh---h--cCCceEEEecCCh-hhH--H----HHHHHHHHcCCCCCcEEEc
Q 002729 710 PEDKFIFACFNQL--YKMDPEIFNTWCNILR---R--VPNSALWLLRFPA-AGE--M----RLRAYAVAQGVQPDQIIFT 775 (887)
Q Consensus 710 ~~~~~~~~~~~~~--~k~~~~~~~~~~~il~---~--~p~~~l~~~~~~~-~~~--~----~l~~~~~~~g~~~~r~~~~ 775 (887)
.++.+++|...|+ +|-.+-++....++.+ . .| ..+++.|.+. ... . .+.+....-.+ ++||+|.
T Consensus 475 dpd~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~p-vQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfl 552 (778)
T cd04299 475 DPNVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERP-VQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFL 552 (778)
T ss_pred CCCccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCC-eEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEE
Confidence 3566777777776 5877777777666644 1 34 6777777432 111 2 33333333344 5799998
Q ss_pred CCCCcHHHHHhccCCcEEecCCC--CCC-chhHHHHHHhCCceeeecccchhhh
Q 002729 776 DVAMKQEHIRRSSLADLFLDTPL--CNA-HTTGTDILWAGLPMITLPLEKMATR 826 (887)
Q Consensus 776 ~~~~~~~~~~~~~~~d~~ld~~~--~~g-~~t~~eal~~gvPvvt~~g~~~~~r 826 (887)
.--+-.-=-.+++.|||.|.|+- ++. ||+-+=||.-|++.++.-...+.+-
T Consensus 553 e~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~ 606 (778)
T cd04299 553 EDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEG 606 (778)
T ss_pred cCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCccccc
Confidence 75433211224799999999944 776 9999999999999998877666653
No 479
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.92 E-value=0.092 Score=49.96 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=43.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCh
Q 002729 381 TYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFP 440 (887)
Q Consensus 381 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 440 (887)
...+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344566777777777777777777777777777777777777777777777777777654
No 480
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=93.90 E-value=0.098 Score=49.48 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=59.4
Q ss_pred CcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchhHHHHHHhCCceeeecccch---hhhhHHHHHHhcCCCCcccc---
Q 002729 770 DQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKM---ATRVAGSLCLATGLGEEMIV--- 843 (887)
Q Consensus 770 ~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~~~g~~~~~~~--- 843 (887)
.+|.+.+..+. ...++..+|+++ ..+|+.|+.|++++|+|.|.++-... ....-+..+...|..- .+.
T Consensus 55 ~~v~~~~~~~~--m~~~m~~aDlvI---s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~ 128 (167)
T PF04101_consen 55 PNVKVFGFVDN--MAELMAAADLVI---SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESE 128 (167)
T ss_dssp CCCEEECSSSS--HHHHHHHHSEEE---ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC
T ss_pred CcEEEEechhh--HHHHHHHcCEEE---eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCccc
Confidence 67888888763 455567899997 35667899999999999988876662 2222334566667765 443
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002729 844 NSMKEYEERAVSLALDRQKLQALTNK 869 (887)
Q Consensus 844 ~~~~~y~~~a~~l~~d~~~~~~~~~~ 869 (887)
.+.+...+....+..++..+..+...
T Consensus 129 ~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp -SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred CCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 23566777777888888876655443
No 481
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=2.5 Score=46.52 Aligned_cols=131 Identities=21% Similarity=0.190 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCChHHHHh--HHHHHHHcCChhHHHHHHHHHHhccCCCchhHhhHHHHHHHcCCHHHHHHHHHH-HH
Q 002729 289 AIQCYNQCLSLQPSHPQALTN--LGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNE-VL 365 (887)
Q Consensus 289 A~~~~~~al~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al 365 (887)
++..+...+..++.+++.+.. +...+...+....+...+...+..+|++.....+++......|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444445556666655333 355555666666777777777777777777777777777666666665555554 66
Q ss_pred hcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhC
Q 002729 366 RIDPLAADGLVNR------GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (887)
Q Consensus 366 ~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (887)
...|.+......+ +.....+|+..++....+++....|.++.+...+.....+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 6677776655544 77777778888888888888888888777666666554433
No 482
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.79 E-value=2 Score=36.59 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC---CC---------chhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 002729 4 ALAHQMYKSGSYKQALEHSNSVYERN---PL---------RTDNLLLLGAIYYQLHDYDMCIARNEEALRL-------EP 64 (887)
Q Consensus 4 ~la~~~~~~g~~~~A~~~~~~~l~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p 64 (887)
..|...++.|-|++|...+.++.+.. |. +..++-.|+..+..+|+|++++...++++.. +.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 34566677778888888887776532 21 2345566667777777777766666555432 22
Q ss_pred Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002729 65 RF----AECYGNMANAWKEKGDIDLAIRYYLVA 93 (887)
Q Consensus 65 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~a 93 (887)
+. ..+-+..+..+...|+.++|++.|+.+
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 21 122334444445555555555555444
No 483
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.77 E-value=2.9 Score=37.50 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCH
Q 002729 351 QGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHV 422 (887)
Q Consensus 351 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 422 (887)
.++.+++..++..+--+.|+.+..-..-|+++...|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 555555555555555555666655555566666666666666666665555555555555555555555553
No 484
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.64 E-value=0.18 Score=52.12 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCchh
Q 002729 725 MDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTT 804 (887)
Q Consensus 725 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~t 804 (887)
......++...+++..|+..|++.-.|......-...+....-...++++....+..+ ++..+|.++ --.+|+
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---Ll~~s~~Vv----tinStv 210 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYE---LLEQSDAVV----TINSTV 210 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHH---HHHhCCEEE----EECCHH
Confidence 4456777777888889999998876553211111122333311244555555554444 457789887 556889
Q ss_pred HHHHHHhCCceeeecccchh
Q 002729 805 GTDILWAGLPMITLPLEKMA 824 (887)
Q Consensus 805 ~~eal~~gvPvvt~~g~~~~ 824 (887)
.+|||.+|.||||+.-..+.
T Consensus 211 GlEAll~gkpVi~~G~~~Y~ 230 (269)
T PF05159_consen 211 GLEALLHGKPVIVFGRAFYA 230 (269)
T ss_pred HHHHHHcCCceEEecCcccC
Confidence 99999999999996554444
No 485
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.63 E-value=0.1 Score=32.74 Aligned_cols=31 Identities=39% Similarity=0.589 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 408 AHANLASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 408 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
++..+|.++...|++++|...|+++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555666666666666666665555543
No 486
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.62 E-value=3.6 Score=45.36 Aligned_cols=130 Identities=21% Similarity=0.177 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002729 70 YGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQG 149 (887)
Q Consensus 70 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 149 (887)
...++..+.++|..+.|++..+ +++..+ .+..+.|+++.|.+..++ .++...|..+|.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~--------D~~~rF---eLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT--------DPDHRF---ELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS---------HHHHH---HHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcC--------ChHHHh---HHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 4445555555665555555431 122222 233456666666554322 234556666666666666
Q ss_pred ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002729 150 LVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQR 228 (887)
Q Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (887)
+++-|.++|+++-. +..+..+|.-.|+.+.-.++.+.+...... +..-.++...|+.++.++++.+
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655422 334455555566655544444444332211 1122333344555555555444
No 487
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.61 E-value=2 Score=36.54 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=49.1
Q ss_pred HHcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCcH---
Q 002729 349 KQQGNYADAISCYNEVLRIDPL------------AADGLVNRGNTYKEIGRVTDAIQDYIRAITI-------RPTMA--- 406 (887)
Q Consensus 349 ~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------~p~~~--- 406 (887)
.+.|-|++|...++++.+.... +.-.+..++..+..+|+|++++..-.+++.. +.+..
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 3456677777777776664321 1225566777777778877777666666532 33322
Q ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002729 407 -EAHANLASAYKDSGHVEAAIKSYKQALL 434 (887)
Q Consensus 407 -~~~~~la~~~~~~g~~~~A~~~~~~al~ 434 (887)
.+-++.+.++...|+.++|+..|+.+-+
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2335556666667777777777666544
No 488
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.59 E-value=13 Score=40.39 Aligned_cols=93 Identities=12% Similarity=0.122 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCChhHHhhHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002729 204 DAYLNLGNVYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDV 283 (887)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 283 (887)
..+..+..++....++.-...++.+++....+-.++..++.+|.+. ..++-...+++..+.+-++...-..++..|.+
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 3444444555544455555555566666555555666666666555 44455555555555555555444455554444
Q ss_pred CCHHHHHHHHHHHHh
Q 002729 284 GRVDEAIQCYNQCLS 298 (887)
Q Consensus 284 g~~~~A~~~~~~al~ 298 (887)
++.+++..+|.+++.
T Consensus 145 ik~sk~a~~f~Ka~y 159 (711)
T COG1747 145 IKKSKAAEFFGKALY 159 (711)
T ss_pred hchhhHHHHHHHHHH
Confidence 555566666666554
No 489
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.55 E-value=0.48 Score=50.60 Aligned_cols=105 Identities=17% Similarity=0.052 Sum_probs=65.7
Q ss_pred CcEEEEec-CC-CCCC-CHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhcc
Q 002729 712 DKFIFACF-NQ-LYKM-DPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSS 788 (887)
Q Consensus 712 ~~~~~~~~-~~-~~k~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~ 788 (887)
..++|+.. .+ ..|. ..+-++-.++.+.+.- -.+++.|++ ...+...+.....+.. +.+.|.++-.+..++..
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~-~~Vvl~g~~-~e~e~~~~i~~~~~~~---~~l~~k~sL~e~~~li~ 250 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKG-YQVVLFGGP-DEEERAEEIAKGLPNA---VILAGKTSLEELAALIA 250 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCC-CEEEEecCh-HHHHHHHHHHHhcCCc---cccCCCCCHHHHHHHHh
Confidence 45555554 33 4454 4444444444444443 567777765 4344444544444432 22899999999999999
Q ss_pred CCcEEecCCCCCCchhHHHHHHhCCceeeecccchhh
Q 002729 789 LADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMAT 825 (887)
Q Consensus 789 ~~d~~ld~~~~~g~~t~~eal~~gvPvvt~~g~~~~~ 825 (887)
.||+++- +-+-.+==|-+.|+|+|++-|++-..
T Consensus 251 ~a~l~I~----~DSg~~HlAaA~~~P~I~iyg~t~~~ 283 (334)
T COG0859 251 GADLVIG----NDSGPMHLAAALGTPTIALYGPTSPA 283 (334)
T ss_pred cCCEEEc----cCChHHHHHHHcCCCEEEEECCCCcc
Confidence 9999872 22223334778999999999988543
No 490
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.49 E-value=2.4 Score=46.78 Aligned_cols=27 Identities=26% Similarity=0.713 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002729 101 ADAWSNLASAYMRKGRLNEAAQCCRQA 127 (887)
Q Consensus 101 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 127 (887)
+..|..+|.....+|+++-|.++|+++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 444555555555555555555444443
No 491
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=93.47 E-value=0.43 Score=50.65 Aligned_cols=78 Identities=10% Similarity=0.052 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHhhcCCceEEEecCChhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCCch
Q 002729 724 KMDPEIFNTWCNILRRVPNSALWLLRFPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHT 803 (887)
Q Consensus 724 k~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g~~ 803 (887)
++.|.++++..++.+.. .++++.+... .+.+++..... ..+.|.+ +-...++.||++| ..+||
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~~--~~~i~~~~~~~----~~~~~~~-----~~~~~m~~aDlal----~~SGT 245 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFFK--GKDLKEIYGDI----SEFEISY-----DTHKALLEAEFAF----ICSGT 245 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCCc--HHHHHHHHhcC----CCcEEec-----cHHHHHHhhhHHH----hcCcH
Confidence 46787788887776543 4555544332 34455444321 1233443 1235678899998 77899
Q ss_pred hHHHHHHhCCceeee
Q 002729 804 TGTDILWAGLPMITL 818 (887)
Q Consensus 804 t~~eal~~gvPvvt~ 818 (887)
+|+|++.+|+|.|..
T Consensus 246 ~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 246 ATLEAALIGTPFVLA 260 (347)
T ss_pred HHHHHHHhCCCEEEE
Confidence 999999999997763
No 492
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.27 E-value=9.7 Score=38.70 Aligned_cols=190 Identities=16% Similarity=0.123 Sum_probs=94.6
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHcCChhHH
Q 002729 244 STYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAA 323 (887)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 323 (887)
+...+..+..+-++.-..+++++|+...+|..++.-- ..-..+|.++++++++.... .+.........|...+|
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccchhh
Confidence 3344455556666666677777777776666655432 23456677777776654211 11111111111111111
Q ss_pred HHHHHHHHhccCC-CchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002729 324 ASYYKATLAVTTG-LSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA--ADGLVNRGNTYKEIGRVTDAIQDYIRAIT 400 (887)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 400 (887)
. .+.+.+ ...+...++.+..++|+..+|.+.++...+..|-. ..++-++...+.+..-|.+....+.+.-+
T Consensus 266 ~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 266 Q------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred h------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 111111 11223356777777777777777777776655522 23444555555555555444444444333
Q ss_pred cC-CCcHHHHHHHHHH-------------HHhCCC---HHHHHHHHHHHHHcCCCChHHHHH
Q 002729 401 IR-PTMAEAHANLASA-------------YKDSGH---VEAAIKSYKQALLLRPDFPEATCN 445 (887)
Q Consensus 401 ~~-p~~~~~~~~la~~-------------~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~ 445 (887)
+. |..+.+.+.-+.+ -.+.|- -..|++...++.+.+|.-|.....
T Consensus 340 islPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 340 ISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHH
Confidence 32 3333322222111 122221 235788889999999987765543
No 493
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.25 E-value=0.83 Score=39.88 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cCCC-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHH
Q 002729 370 LAADGLVNRGNTYKEIG---RVTDAIQDYIRAIT-IRPT-MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEAT 443 (887)
Q Consensus 370 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 443 (887)
-.....+++++++.+.. +..+.+.+++..++ -.|. .-+..+.|+..+.+.|+|++++++.+..++..|++..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 34567888888888765 45678889999887 4443 356788899999999999999999999999999987653
No 494
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=93.21 E-value=12 Score=39.07 Aligned_cols=103 Identities=16% Similarity=0.131 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhh---cCCceEEEecCC-hhhHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHhccCCcEEecCCCCCC
Q 002729 726 DPEIFNTWCNILRR---VPNSALWLLRFP-AAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNA 801 (887)
Q Consensus 726 ~~~~~~~~~~il~~---~p~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~d~~ld~~~~~g 801 (887)
....++.+++.+.. ..+..++++... +.+. ...+.+...--++.+|+ ...+..+.+..+..+|+++-+-
T Consensus 186 ~~~~~~~l~~~l~~l~~~~g~~v~~i~~~~~~D~-~~~~~l~~~~~~~~~i~--~~~~~~e~~~~i~~~~~vI~~R---- 258 (298)
T TIGR03609 186 DVSRLLRLLRALDRLQRDTGAFVLFLPFQQPQDL-PLARALRDQLLGPAEVL--SPLDPEELLGLFASARLVIGMR---- 258 (298)
T ss_pred CHHHHHHHHHHHHHHHHhhCCeEEEEeCCcchhH-HHHHHHHHhcCCCcEEE--ecCCHHHHHHHHhhCCEEEEec----
Confidence 44444444444332 234545444432 2222 23333333322344553 5556789999999999988441
Q ss_pred chhHHHHHHhCCceeeecccchhhhhHHHHHHhcCCCC
Q 002729 802 HTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGE 839 (887)
Q Consensus 802 ~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g~~~ 839 (887)
=-.++=|+.+|||+|.+. . +.=..+++..+|+|.
T Consensus 259 lH~~I~A~~~gvP~i~i~---y-~~K~~~~~~~~g~~~ 292 (298)
T TIGR03609 259 LHALILAAAAGVPFVALS---Y-DPKVRAFAADAGVPG 292 (298)
T ss_pred hHHHHHHHHcCCCEEEee---c-cHHHHHHHHHhCCCc
Confidence 125788999999999884 2 234456899999998
No 495
>PF13041 PPR_2: PPR repeat family
Probab=93.10 E-value=0.43 Score=34.18 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCChHHHHHHH
Q 002729 405 MAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLL 447 (887)
Q Consensus 405 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 447 (887)
+..+|..+...|.+.|++++|.++|+++.+.+-.+....++.+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3567888999999999999999999999988766555555443
No 496
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.93 E-value=0.18 Score=31.58 Aligned_cols=30 Identities=33% Similarity=0.675 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002729 374 GLVNRGNTYKEIGRVTDAIQDYIRAITIRP 403 (887)
Q Consensus 374 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 403 (887)
++..+|.++...|++++|+..++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555555555555555555555544
No 497
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=6.1 Score=43.44 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=56.7
Q ss_pred cCChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------------
Q 002729 114 KGRLNEAAQCCRQALAL------------NPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRI----------------- 164 (887)
Q Consensus 114 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------- 164 (887)
...|++|...|.-+... .|-+.+.+..++.+...+|+.+.|....++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34577777777776554 3556677788888888888877777766665421
Q ss_pred ----CCChHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 002729 165 ----QPTFAI---AWSNLAGLFMESGDLNRALQYYKEAVKLKPT-FPDAYLNLGNVY 213 (887)
Q Consensus 165 ----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~ 213 (887)
.|.|-. +++.....+.+.|-+..|.++.+-++.++|. +|.....+...|
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 112211 1222233344455566666666655555555 454444444443
No 498
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.66 E-value=0.22 Score=49.63 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=34.6
Q ss_pred cCCCchhHhhHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002729 334 TTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVN-RGNTYKEIGRVTDAIQDYIRAITIRPTMAEAH 409 (887)
Q Consensus 334 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 409 (887)
.++++..|...+....+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.+++.++|+++..|
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 34444444444444444444444444555555555555544443 22333344444444444444444444444443
No 499
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.63 E-value=0.25 Score=49.28 Aligned_cols=89 Identities=7% Similarity=-0.037 Sum_probs=77.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 002729 361 YNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHAN-LASAYKDSGHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 361 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 439 (887)
|.++-...|.++..|...+....+.|.+.+--..|.++++..|.+++.|.. -+.-+...++++.++..|.+.+.++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 344455578899999999999999999999999999999999999999876 5566778899999999999999999999
Q ss_pred hHHHHHHHHH
Q 002729 440 PEATCNLLHT 449 (887)
Q Consensus 440 ~~~~~~l~~~ 449 (887)
|..|......
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 9999876654
No 500
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.42 E-value=1.3 Score=43.33 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhc----C-C--CCHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcC--C----CcHHHHHH
Q 002729 352 GNYADAISCYNEVLRI----D-P--LAADGLVNRGNTYKEIGRVT-------DAIQDYIRAITIR--P----TMAEAHAN 411 (887)
Q Consensus 352 g~~~~A~~~~~~al~~----~-p--~~~~~~~~l~~~~~~~g~~~-------~A~~~~~~al~~~--p----~~~~~~~~ 411 (887)
..+++|++.|.-++-. . + .-+..+..+|++|...|+.+ .|.+.|+++++.. | +...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 3455555555554432 1 1 11345666777777777744 4445555555443 2 23567888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 002729 412 LASAYKDSGHVEAAIKSYKQALLLRPD 438 (887)
Q Consensus 412 la~~~~~~g~~~~A~~~~~~al~~~p~ 438 (887)
+|.+..+.|++++|.++|.+++...-.
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999886443
Done!