Query 002729
Match_columns 887
No_of_seqs 1556 out of 3810
Neff 10.4
Searched_HMMs 29240
Date Tue Mar 26 17:30:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002729.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1445-1449//hhsearch_pdb/002729hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 942.8 62.1 584 299-887 4-696 (723)
2 3q3e_A HMW1C-like glycosyltran 1.0 1 1 609.8 37.4 334 531-882 270-611 (631)
3 2vsy_A XCC0866; transferase, g 1.0 1 1 513.2 58.6 541 283-885 2-548 (568)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 359.1 49.4 446 2-450 87-594 (597)
5 2xpi_A Anaphase-promoting comp 1.0 1 1 340.3 48.2 436 31-469 82-579 (597)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 335.9 50.7 384 3-420 3-387 (388)
7 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 332.0 51.1 383 73-455 5-388 (388)
8 3fp2_A TPR repeat-containing p 1.0 1 1 313.5 39.9 439 3-445 29-501 (537)
9 2gw1_A Mitochondrial precursor 1.0 1 1 307.3 41.2 444 2-448 9-491 (514)
10 3fp2_A TPR repeat-containing p 1.0 1 1 306.1 34.0 451 15-470 3-492 (537)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=942.77 Aligned_cols=584 Identities=47% Similarity=0.805 Sum_probs=532.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 09999688875999999728926999999999831689915674399999982999999999999981099988899999
Q 002729 299 LQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNR 378 (887)
Q Consensus 299 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 378 (887)
..|++++++.++|.++.++|++++|+..|+++++.+|++..++.++|.++..+|++++|+..|+++++++|++..++.++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99871999999999999869999999999999986899899999999999986999999999999998099989999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999909989999999999950999299999999999967998999999999997099996899999997411179325
Q 002729 379 GNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCSWED 458 (887)
Q Consensus 379 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 458 (887)
|.++..+|++++|++.|+++++++|++..++.++|.+|..+|++++|++.|+++++++|+++.++.+++.++...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999849999999999999980999899999999999986999999999999997399985777405567774014999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 86889999999999750079998887533457689999999999997443434310589998999998655578865523
Q 002729 459 RDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPPFNHPVPIPIRLDGGLRRLR 538 (887)
Q Consensus 459 a~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 538 (887)
+...++++.++..+.......+...++..+.+..++......+.+++..+.........++...+ .....+.+|||
T Consensus 164 A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~aia~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~klr 239 (723)
T 4gyw_A 164 YDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHP----KDLKLSDGRLR 239 (723)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCCCHHHHHHHHHHHHHHHHHHHHTTTCCCCCCC----CSSTTTTTCEE
T ss_pred HHHHHHHHHHHCHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCCCCCCE
T ss_conf 99999999996765786434742120245433048889999999999853211101347644575----32346655431
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCC-CHHHHHHHHHHCCCEEEE
Q ss_conf 6354189899814773567740079998189998647999817989997313843778999-999999999708970999
Q 002729 539 VGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAM-SSDMIAKLINEDKIQILI 617 (887)
Q Consensus 539 iG~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~dil~ 617 (887)
|||+|+||++|||++++.+++++||+++|||++|++++.+.+.++.+++..+++|+++.++ ++.+++++|++|+|||||
T Consensus 240 IGyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~i~~d~iDIli 319 (723)
T 4gyw_A 240 VGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILV 319 (723)
T ss_dssp EEEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHHHSSEEEEGGGCCCHHHHHHHHHHTTCSEEE
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 45641422147178899999997245744699997689886089999998641340201278479999998742650677
Q ss_pred ECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC--
Q ss_conf 268767888402321189953780233688778996437872473289776778853426659854457886555567--
Q 002729 618 NLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVNDYKQKNMDV-- 695 (887)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~ap~q~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~l~~lp~~~~~~~~~~~~~~~-- 695 (887)
||+|||.++|+.+|++|||||||+|||||+|||++.|||+|+|.+++|++.+++|+||++|||+||+|+++....+..
T Consensus 320 dl~g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~ 399 (723)
T 4gyw_A 320 NMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKK 399 (723)
T ss_dssp ESCSSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSCGGGGGGCSSEEEECSSCSCCCCHHHHCGGGSS
T ss_pred ECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 22577788763256508887235521478777887677798688878800343060001327875403785112544333
Q ss_pred --------------------------------------------------------------------------------
Q ss_conf --------------------------------------------------------------------------------
Q 002729 696 -------------------------------------------------------------------------------- 695 (887)
Q Consensus 696 -------------------------------------------------------------------------------- 695 (887)
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~ 479 (723)
T 4gyw_A 400 KAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNADSSNTALNMPVIPMNTIAEAVIEMINRGQIQI 479 (723)
T ss_dssp CEEECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC-----------------CEEEECSSHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54322233443234421235543210002332100112134444443322211124555543211101100012343332
Q ss_pred --------------------------CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf --------------------------899999887889999993899853977888987899999999536891699851
Q 002729 696 --------------------------LDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLR 749 (887)
Q Consensus 696 --------------------------~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~ 749 (887)
+.+...++|..+|||+++|||||||+++|++|+++++|++||++||+|+|||..
T Consensus 480 ~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~ 559 (723)
T 4gyw_A 480 TINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLR 559 (723)
T ss_dssp EETTEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 33443223432211112100012235543332216541999797799968840138999999999999858997399980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHH
Q ss_conf 78235999999999829999967873788928899750577288349999982138989881896453146520231279
Q 002729 750 FPAAGEMRLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAG 829 (887)
Q Consensus 750 ~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~ 829 (887)
++...+.++.+.+++.||+++||+|.+.++..+|++.|+.+||+|||||||||||++|||||||||||++|++|++|+|+
T Consensus 560 ~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~ 639 (723)
T 4gyw_A 560 FPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAA 639 (723)
T ss_dssp TTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHH
T ss_conf 76777999999999659995748878999999999986798398479795978999999972999797658973176999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9998669997544489889999999871599999999999993010299999677559
Q 002729 830 SLCLATGLGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARWVS 887 (887)
Q Consensus 830 ~~l~~~g~~~~~i~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (887)
|+|.++|++| |||.|.++||++|++|++|++.|+++|++||+++.+|||||+++|++
T Consensus 640 s~l~~~gl~e-~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~~~s~l~d~~~~~~ 696 (723)
T 4gyw_A 640 SQLTCLGCLE-LIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTM 696 (723)
T ss_dssp HHHHHHTCGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHCCCCC-CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9999769951-23599999999999996699999999999999887486868899999
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=1.00 E-value=1 Score=609.80 Aligned_cols=334 Identities=17% Similarity=0.152 Sum_probs=301.8
Q ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECCCCC----HHHHHH
Q ss_conf 7886552363541898998147735677400799981899986479998179899973138437789999----999999
Q 002729 531 DGGLRRLRVGYVSSDFGNHPLSHLMGSVFGMHNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVSAMS----SDMIAK 606 (887)
Q Consensus 531 ~~~~~~lriG~~s~~~~~h~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 606 (887)
..+++++||||+|.++++|+|++++.+++.+ ||++|||++|+ ++.. +..+ +..+++|+++.+++ +.++++
T Consensus 270 ~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~~FEV~~Ys-~~~~-D~~t---r~~~d~f~~l~~~s~~~~~~~ia~ 343 (631)
T 3q3e_A 270 YRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-AREHFYLIGLG-SPSV-DQAG---QEVFDEFHLVAGDNMKQKLEFIRS 343 (631)
T ss_dssp EETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTTTSEEEEEE-CTTS-CHHH---HTTSSEEEECCCSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHH-HHHCEEEEEEE-CCCC-CHHH---HHCCCEEEECCCCCCCCCHHHHHH
T ss_conf 7789717999958655888189999999996-35368999996-8987-8878---860867999978875456999999
Q ss_pred HHHHCCCEEEEECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 99708970999268767888402321189953780233688778996437872473289776778853426659854457
Q 002729 607 LINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLVHVPHCYFVN 686 (887)
Q Consensus 607 ~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap~q~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~l~~lp~~~~~~ 686 (887)
+|++|+|||||||+|||.+.++.++++|||||||+|+|||+|||+++|||+|+|++++| .+.+|+||++|||+|++|+
T Consensus 344 ~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPVQvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~ 421 (631)
T 3q3e_A 344 VCESNGAAIFYMPSIGMDMTTIFASNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPY 421 (631)
T ss_dssp HHHHHTCSEEEESCCSSSHHHHHHTTSCCSSEEEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCC
T ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHCCCCHHEEECCCCCCCCCCCCCCEEEECCCCCC--CCCCCEEEEEECCCCCCCC
T ss_conf 99865998999799998700478876899063375058875457666778996897778--3237600279789986334
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHH
Q ss_conf 88655556789999988788999999--389985397788898789999999953689169985--17823599999999
Q 002729 687 DYKQKNMDVLDPNCQPKRSDYGLPED--KFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLL--RFPAAGEMRLRAYA 762 (887)
Q Consensus 687 ~~~~~~~~~~~~~~~~~r~~~~l~~~--~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~--~~~~~~~~~~~~~~ 762 (887)
.++.. .|.|..+|+|++ +++|||||++.|++|+++++|++|++++|+++||+. |.++.....+.+.+
T Consensus 422 ~p~~~---------~p~r~~~~lp~~~G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~~~ 492 (631)
T 3q3e_A 422 VPSAL---------APEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVERF 492 (631)
T ss_dssp CCCTT---------CCSSCCCCCCSCCSEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHHHH
T ss_pred CCCCC---------CCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 78434---------776433457767884899989865668999999999999868985899872378711558999999
Q ss_pred HHCCCCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98299999678737889288997505772883499999821389898818964531465202312799998669997544
Q 002729 763 VAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATGLGEEMI 842 (887)
Q Consensus 763 ~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g~~~~~i 842 (887)
.+.|++ +||+|.|.++..+|++.|+.+||+||||||+||||++|||||||||||++|+++++|+|+|+|.++|++|++|
T Consensus 493 ~~~GI~-~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LI 571 (631)
T 3q3e_A 493 IKSYLG-DSATAHPHSPYHQYLRILHNCDMMVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLI 571 (631)
T ss_dssp HHHHHG-GGEEEECCCCHHHHHHHHHTCSEEECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGE
T ss_pred HHCCCC-CCEEECCCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 982999-5489868899899999984285999698556971899999769988952688578886789887469976452
Q ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4898899999998715999999999999930102999996
Q 002729 843 VNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDT 882 (887)
Q Consensus 843 ~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~ 882 (887)
+.|+++|+++|++|++|++.|+++|+++++++.++|+||.
T Consensus 572 A~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd~ 611 (631)
T 3q3e_A 572 ANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFTG 611 (631)
T ss_dssp ESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTCS
T ss_pred CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 3999999999999967999999999999987653777123
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=1.00 E-value=1 Score=513.23 Aligned_cols=541 Identities=28% Similarity=0.422 Sum_probs=456.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 69989999999999850999968887599999972892699999999983168991567439999998299999999999
Q 002729 283 VGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYN 362 (887)
Q Consensus 283 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 362 (887)
.|++++|+..++++++.+|++..++..+|.++...|++++|...++++++..|++..++..+|.++...|++++|+..++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 86599999999999975999889999999999986999999999999997399989999999999998799999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHCCCCC
Q ss_conf 998109998889999999999909989999999999950999299999999999967---99899999999999709999
Q 002729 363 EVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS---GHVEAAIKSYKQALLLRPDF 439 (887)
Q Consensus 363 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~ 439 (887)
++++.+|++..++..+|.++...|++++|++.++++++.+|++..++..++.++... |++++|.+.++++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99743999999999999999875889999999999998589988999999999997325121899999999998468766
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 68999999974111793258688999999999975007999888753345768999999999999744343431058999
Q 002729 440 PEATCNLLHTLQCVCSWEDRDRMFSEVEGIIRRQVNMSVLPSVQPFHAIAYPIDPMLALEISRKYASHCSIIASRFALPP 519 (887)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (887)
...+..++ ..++......++.|....-. . +
T Consensus 162 ~~~~~~l~-------------------------------------------~~~~~~~~~~~~~~~~~~~~--~----~- 191 (568)
T 2vsy_A 162 VEPFAFLS-------------------------------------------EDASAAEQLACARTRAQAIA--A----S- 191 (568)
T ss_dssp SCHHHHTT-------------------------------------------SCCCHHHHHHHHHHHHHHHH--T----T-
T ss_pred CCHHHHHC-------------------------------------------CCCHHHHHHHHHHHHHHCCC--C----C-
T ss_conf 68177727-------------------------------------------99989999999999973147--6----5-
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC--CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEECC
Q ss_conf 899999865557886552363541898998147735677400--799981899986479998179899973138437789
Q 002729 520 FNHPVPIPIRLDGGLRRLRVGYVSSDFGNHPLSHLMGSVFGM--HNKENVEVFCYALSPNDGTEWRQRTQSEAEHFVDVS 597 (887)
Q Consensus 520 ~~~~~~~~~~~~~~~~~lriG~~s~~~~~h~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (887)
..|. +.....+++++|||++++++..|.++.++..+++. +++.+|||++|+.++...+.+..+++... .|+.+.
T Consensus 192 -~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 267 (568)
T 2vsy_A 192 -VRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQAS-TLHDVT 267 (568)
T ss_dssp -CCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHHHHCTTEEEEEEESSCCCSCHHHHHHHHTS-EEEECT
T ss_pred -CCCC--CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC-EEEECC
T ss_conf -6778--888778999808999886410070899999998605688012899999799987659999987447-699788
Q ss_pred CCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEE
Q ss_conf 99999999999708970999268767888402321189953780233688778996437872473289776778853426
Q 002729 598 AMSSDMIAKLINEDKIQILINLNGYTKGARNEIFAMQPAPIQVSYMGFPGTTGASYIDYLVTDEFVSPLRYAHIYSEKLV 677 (887)
Q Consensus 598 ~~~~~~~~~~i~~~~~dil~~~~~~~~~~~~~~~~~~~ap~q~~~~g~~~t~g~~~~dy~~~d~~~~p~~~~~~~~e~l~ 677 (887)
.++...+.+.|+++++||++++++|+.++++.+++.|++|+|++|+|||.++|++.+||+++|.++.++.....|.+++.
T Consensus 268 ~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~ 347 (568)
T 2vsy_A 268 ALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVL 347 (568)
T ss_dssp TCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSSEEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEE
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEE
T ss_conf 99999999999868997999898877766677874699751576536774658877529987987688655568811067
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEC-CCHHHHH
Q ss_conf 659854457886555567899999887889999993899853977888987899999999536891699851-7823599
Q 002729 678 HVPHCYFVNDYKQKNMDVLDPNCQPKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILRRVPNSALWLLR-FPAAGEM 756 (887)
Q Consensus 678 ~lp~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~~~~~~~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~ 756 (887)
.+|+++.. ... ..+....+.|..+|++++.+++++.+...|..+.++++|.+++++.|+.+|+|+| .++. .+
T Consensus 348 ~ipn~~~~---~~~---~~~~~~~~~r~~~~~~~~~~v~~~g~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g~~-~~ 420 (568)
T 2vsy_A 348 RLQGAFQP---SDT---SRVVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEA-DA 420 (568)
T ss_dssp ECSSCSCC---CCT---TCCCCCCCCTGGGTCCTTSCEEEECCCGGGCCHHHHHHHHHHHHHCTTCEEEEECCSTTH-HH
T ss_pred CCCCCCCC---CCC---CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHH-HH
T ss_conf 17876779---977---778888987322489999779996884146998999999999986899679995398899-99
Q ss_pred HHHHHHHHCCCCCCCEEECCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf 99999998299999678737889288997505772883499999821389898818964531465202312799998669
Q 002729 757 RLRAYAVAQGVQPDQIIFTDVAMKQEHIRRSSLADLFLDTPLCNAHTTGTDILWAGLPMITLPLEKMATRVAGSLCLATG 836 (887)
Q Consensus 757 ~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~di~ld~~~~~g~~t~~eal~~g~Pvvt~~~~~~~~r~~~~~l~~~g 836 (887)
.+.+.+.+.|++.++|+|.|.++..++..+|+.+||+++|+++++|++++|||++|+|||+++|..+.++++++++..+|
T Consensus 421 ~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g 500 (568)
T 2vsy_A 421 RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG 500 (568)
T ss_dssp HHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999997699866778607899799999984387883288989718899999679998965588700779999999779
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9975444898899999998715999999999999930102999996775
Q 002729 837 LGEEMIVNSMKEYEERAVSLALDRQKLQALTNKLKSVRLTCPLFDTARW 885 (887)
Q Consensus 837 ~~~~~i~~~~~~y~~~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (887)
+++ +|.+|.+++++.+.+|..|++.+..++++.+++......|+...+
T Consensus 501 ~~e-~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 548 (568)
T 2vsy_A 501 LDE-MNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGF 548 (568)
T ss_dssp CGG-GBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHH
T ss_pred CHH-HHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 905-300999999999999956999999999999986550888899999
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=359.11 Aligned_cols=446 Identities=17% Similarity=0.161 Sum_probs=263.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 36789999863799999999999985199864699999999986099999999999998419993889999999999909
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
+..++..+.+.|++++|+..|++++...|+ ...++.++.++...|++++|+..+++++.. +.+..++..++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHH
T ss_conf 999999998745834799999999960899-357999999999747699999999987335-456508999999999886
Q ss_pred CHHHHHHHHHHHHHCC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999999998309----------------994999999999999839969999999999971999899999999999
Q 002729 82 DIDLAIRYYLVAIELR----------------PNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLM 145 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 145 (887)
++++|+..|++..... +.+..+|..++.+|.+.|++++|+..|+++++.+|.+...+..++.++
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNH 244 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 69999999842488632232343343211235125899999889999839989999999999972932569999999850
Q ss_pred H--------------------------------------HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 9--------------------------------------83995899999999986299809999999999997299889
Q 002729 146 K--------------------------------------AQGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNR 187 (887)
Q Consensus 146 ~--------------------------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 187 (887)
. ..|++++|...++++++. |.+...+..++..+...|++++
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHCCHHH
T ss_conf 346156789998657742344308899999999999980731399999999876438-8309999999999998468999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999509998789988999999859938999999999961998-4689639999998399599999999998229
Q 002729 188 ALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCD 266 (887)
Q Consensus 188 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 266 (887)
|+..++++++..|.+..++..++.++...|++++|...++++++..|+ ...+..++..+...|++++|+..++++++..
T Consensus 324 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 324 VLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 99999999972955379999999999982777799999999985183547999999999998356999999999998729
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 99699999899999976998999999999985099996888759999997289269999999998316899156743999
Q 002729 267 PRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAV 346 (887)
Q Consensus 267 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 346 (887)
|.+..+|..++.++...|++++|++.++++++..|++...+..++.++...|++++|...|+++++..|.+...+..++.
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 483 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGV 483 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 77789999999999975777999999999998681343899999999998579999999999999848887679999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Q ss_conf 999829999999999999810------9998-889999999999909989999999999950999299999999999967
Q 002729 347 IYKQQGNYADAISCYNEVLRI------DPLA-ADGLVNRGNTYKEIGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDS 419 (887)
Q Consensus 347 ~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 419 (887)
++...|++++|++.++++++. +|.. ..++..+|.++...|++++|+..++++++..|++..++..++.+|...
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99981899999999999998532345453549999999999999804799999999999973899738999999999981
Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9989999999999970999968999999974
Q 002729 420 GHVEAAIKSYKQALLLRPDFPEATCNLLHTL 450 (887)
Q Consensus 420 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 450 (887)
|++++|.+.|+++++++|+++.++..+..+|
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7899999999999720888748999999987
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=340.34 Aligned_cols=436 Identities=16% Similarity=0.103 Sum_probs=404.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 86469999999998609999999999999841999388999999999990999999999999983099949999999999
Q 002729 31 LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASA 110 (887)
Q Consensus 31 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 110 (887)
.+...+..++..+...|++++|+..+++++...|+. ..+..++.++...|++++|+..|++++.. +.+..++..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 899999999999987458347999999999608993-57999999999747699999999987335-4565089999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 998399699999999999719----------------9989999999999998399589999999998629980999999
Q 002729 111 YMRKGRLNEAAQCCRQALALN----------------PLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAIAWSN 174 (887)
Q Consensus 111 ~~~~g~~~~A~~~~~~~l~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 174 (887)
|.+.|++++|+..|++..... +.+...+..++..+...|++++|+..|+++++.+|.+..++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99886699999998424886322323433432112351258999998899998399899999999999729325699999
Q ss_pred HHH--------------------------------------HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 999--------------------------------------999729988999999999950999878998899999985
Q 002729 175 LAG--------------------------------------LFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKAL 216 (887)
Q Consensus 175 la~--------------------------------------~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 216 (887)
++. .|...|++++|+..++++++. +.+...+..++..+...
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
T ss_conf 99850346156789998657742344308899999999999980731399999999876438-83099999999999984
Q ss_pred CCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9938999999999961998-468963999999839959999999999822999699999899999976998999999999
Q 002729 217 GMPQEAIMCYQRAVQTRPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQ 295 (887)
Q Consensus 217 g~~~~A~~~~~~~~~~~p~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (887)
|++++|+..|+++++..|+ ...+..++.++...|++++|...++++++..|.+...+..++.++...|++++|.+.|++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 68999999999999729553799999999999827777999999999851835479999999999983569999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 98509999688875999999728926999999999831689915674399999982999999999999981099988899
Q 002729 296 CLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGL 375 (887)
Q Consensus 296 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 375 (887)
+++..|.+...+..++.++...|++++|+..|++++...|++...+..++.++...|++++|++.|+++++..|.++..+
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98729777899999999999757779999999999986813438999999999985799999999999998488876799
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99999999909989999999999950------9992-9999999999996799899999999999709999689999999
Q 002729 376 VNRGNTYKEIGRVTDAIQDYIRAITI------RPTM-AEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLH 448 (887)
Q Consensus 376 ~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 448 (887)
..+|.++...|++++|++.|+++++. +|+. ..++..++.+|...|++++|++.++++++.+|+++.++..++.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 558 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIAL 558 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999818999999999999985323454535499999999999998047999999999999738997389999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHH
Q ss_conf 741117932586889999999
Q 002729 449 TLQCVCSWEDRDRMFSEVEGI 469 (887)
Q Consensus 449 ~~~~~g~~~~a~~~~~~~~~~ 469 (887)
++...|+|+++...++++.++
T Consensus 559 ~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 559 VYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHC
T ss_conf 999817899999999999720
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=335.92 Aligned_cols=384 Identities=40% Similarity=0.665 Sum_probs=242.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 67899998637999999999999851998646999999999860999999999999984199938899999999999099
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+.+|..+++.|++++|+..++++++.+|++..++..++.++...|++++|...++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 55799998779999999999999984978899999999999986899999999999976197866999999999987799
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999999999830999499999999999983996999999999997199989999999999998399589999999998
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEAL 162 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (887)
+++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|+....+..+|.++...|++++|+..|++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999999874965399999999999985899999999999997598968999999999998468999999999998
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHH
Q ss_conf 6299809999999999997299889999999999509998789988999999859938999999999961998-468963
Q 002729 163 RIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQTRPN-AIAFGN 241 (887)
Q Consensus 163 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 241 (887)
+..|++..++..++.++...|++++|+..++++++.+|+....+..++.++...|++++|+..+++++...|+ ...+..
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 72989789999999999985999999999999985598867999999999998578999999999998529687899999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999983995999999999982299969999989999997699899999999998509999688875999999728926
Q 002729 242 LASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLGNIYMEWNMLP 321 (887)
Q Consensus 242 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 321 (887)
++.++...|++++|+..++++++..|....++..++.++...|++++|+..++++++..|.+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------------ 304 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH------------------ 304 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------------
T ss_conf 99999986889999999999986499988999999999998699799999999998649444------------------
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999983168991567439999998299999999999998109998889999999999909989999999999950
Q 002729 322 AAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDAIQDYIRAITI 401 (887)
Q Consensus 322 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 401 (887)
...+..++.++...|++++|+..++++++..|++..++..+|.++...|++++|+..|+++++.
T Consensus 305 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 305 ----------------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp ----------------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf ----------------9999999999998489999999999998609873999977999999868889999999999861
Q ss_pred CCCCHHHHHHHHHHHHHCC
Q ss_conf 9992999999999999679
Q 002729 402 RPTMAEAHANLASAYKDSG 420 (887)
Q Consensus 402 ~p~~~~~~~~la~~~~~~g 420 (887)
+|++..++..+|.++..+|
T Consensus 369 ~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 369 SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCC
T ss_conf 9997899985999998745
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=332.00 Aligned_cols=383 Identities=35% Similarity=0.559 Sum_probs=280.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99999990999999999999983099949999999999998399699999999999719998999999999999839958
Q 002729 73 MANAWKEKGDIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQ 152 (887)
Q Consensus 73 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 152 (887)
+|..++..|++++|+..+.++++.+|++..++..++.++...|++++|...++++++.+|.+..++..+|.++...|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 79999877999999999999998497889999999999998689999999999997619786699999999998779999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999986299809999999999997299889999999999509998789988999999859938999999999961
Q 002729 153 EAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVYKALGMPQEAIMCYQRAVQT 232 (887)
Q Consensus 153 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 232 (887)
+|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|+....+..++.++...|++++|+..+++++..
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999987496539999999999998589999999999999759896899999999999846899999999999872
Q ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 998-4689639999998399599999999998229996999998999999769989999999999850999968887599
Q 002729 233 RPN-AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (887)
Q Consensus 233 ~p~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (887)
.|+ ...+..++.++...|++++|+..+++++..+|+...++..+|.++...|++++|+..++++++..|++..++..+|
T Consensus 165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 98978999999999998599999999999998559886799999999999857899999999999852968789999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99997289269999999998316899156743999999829999999999999810999888999999999990998999
Q 002729 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 391 (887)
.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998688999999999998649998899999999999869979999999999864944499999999999984899999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999950999299999999999967998999999999997099996899999997411179
Q 002729 392 IQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 455 (887)
Q Consensus 392 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 455 (887)
+..++++++..|++..++..++.++...|++++|+..|++++++.|+++.++.+++.++...++
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999860987399997799999986888999999999986199978999859999987459
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=313.54 Aligned_cols=439 Identities=14% Similarity=0.181 Sum_probs=317.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 67899998637999999999999851998646999999999860999999999999984199938899999999999099
Q 002729 3 MALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGD 82 (887)
Q Consensus 3 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 82 (887)
+.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|+
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999999864299999999999863899848999999999986899999999999986098628999999999998389
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 999999999998309994999999999999839969999999999971999899---99999999998399589999999
Q 002729 83 IDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVD---AHSNLGNLMKAQGLVQEAYSCYL 159 (887)
Q Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~ 159 (887)
+++|+..|+ ++...|+....+ ...+...+...+|...+++++...|.... ........+....+...+...+.
T Consensus 109 ~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 109 FTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHH-HHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999-986487878588---9999987789889999999997474545434506757999997447499999876
Q ss_pred HHHHHCCCHHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHCCCHHHHHH
Q ss_conf 99862998099999999999--------9729988999999999950999878-------99889999998599389999
Q 002729 160 EALRIQPTFAIAWSNLAGLF--------MESGDLNRALQYYKEAVKLKPTFPD-------AYLNLGNVYKALGMPQEAIM 224 (887)
Q Consensus 160 ~al~~~p~~~~~~~~la~~~--------~~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~ 224 (887)
+.....+........+...+ ...+++++|+..++++++..|++.. ++..++.++...|++++|+.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 32564617899999998788764020688887999999999999987877404459999999999999875455789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999961998468963999999839959999999999822999699999899999976998999999999985099996
Q 002729 225 CYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHP 304 (887)
Q Consensus 225 ~~~~~~~~~p~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (887)
.+++++...|+...+..++.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 265 LLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 99999866987469999999999803799999999997545999879999999999866899999999999998599977
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH------HHHHH
Q ss_conf 888759999997289269999999998316899156743999999829999999999999810999888------99999
Q 002729 305 QALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAAD------GLVNR 378 (887)
Q Consensus 305 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l 378 (887)
..+..+|.++...|++++|...+++++...|.+...+..+|.++...|++++|+..++++++..|.+.. .+..+
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999847799999999999873999859999999999883788999999999987097624468889999988
Q ss_pred HHHHHHC----------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 9999990----------998999999999995099929999999999996799899999999999709999689999
Q 002729 379 GNTYKEI----------GRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEATCN 445 (887)
Q Consensus 379 a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 445 (887)
|.++... |++++|+..++++++..|++..++..+|.++...|++++|+..|++++++.|+++.....
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999976401002247579999999999997499978999999999998514999999999999868993888888
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=307.31 Aligned_cols=444 Identities=14% Similarity=0.127 Sum_probs=349.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 36789999863799999999999985199864699999999986099999999999998419993889999999999909
Q 002729 2 HMALAHQMYKSGSYKQALEHSNSVYERNPLRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKG 81 (887)
Q Consensus 2 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 81 (887)
++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99987899986027899999999985592-27899868899998854999999998776069378999998889999876
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH---HHHHHHCCCCHHHHHHHHHHH--HHCCCHHHHHH
Q ss_conf 9999999999998309994999999999999839969999999---999971999899999999999--98399589999
Q 002729 82 DIDLAIRYYLVAIELRPNFADAWSNLASAYMRKGRLNEAAQCC---RQALALNPLLVDAHSNLGNLM--KAQGLVQEAYS 156 (887)
Q Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~---~~~l~~~p~~~~~~~~la~~~--~~~g~~~~A~~ 156 (887)
++++|+..|+++++..|.+...................+...+ +.+... +.........+... ........ ..
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKERKDKQENLPSVTS-MA 165 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCHHH-HH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHCCCCCHHHH-HH
T ss_conf 6888999999999559875113789999999999999999999989999876-651267724678863447861589-99
Q ss_pred HHHHHHHH--------CCCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHH-----H--C-------CCCHHHHHHHHH
Q ss_conf 99999862--------99809999999999997---2998899999999995-----0--9-------998789988999
Q 002729 157 CYLEALRI--------QPTFAIAWSNLAGLFME---SGDLNRALQYYKEAVK-----L--K-------PTFPDAYLNLGN 211 (887)
Q Consensus 157 ~~~~al~~--------~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~-----~--~-------~~~~~~~~~l~~ 211 (887)
.+...... .|.+...+..++..+.. .|++++|+..++++++ . . |.....+..+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99862587888887259958889999899998762332299999999999988665422381001148278999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99985993899999999996199846896399999983995999999999982299969999989999997699899999
Q 002729 212 VYKALGMPQEAIMCYQRAVQTRPNAIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQ 291 (887)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 291 (887)
++...|++++|+..++++++..|+...+..++.++...|++++|+..+++++...|.+..++..++.++...|++++|+.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99987899999999999986386489999999999988889999999999861386778999999999998077999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999850999968887599999972892699999999983168991567439999998299999999999998109998
Q 002729 292 CYNQCLSLQPSHPQALTNLGNIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLA 371 (887)
Q Consensus 292 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 371 (887)
.++++++..|.+..++..++.++...|++++|...+++++...|.+...+..+|.++...|++++|+..++++++..|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999873850289999999999986899999999999998754677899999999987889999999999999761233
Q ss_pred HH------HHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 88------99999999999---0998999999999995099929999999999996799899999999999709999689
Q 002729 372 AD------GLVNRGNTYKE---IGRVTDAIQDYIRAITIRPTMAEAHANLASAYKDSGHVEAAIKSYKQALLLRPDFPEA 442 (887)
Q Consensus 372 ~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 442 (887)
.. ++..+|.++.. .|++++|+..++++++..|++..++..+|.++...|++++|...|++++++.|+++.+
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 21789999999999998663325888999999999987585558999999999998257999999999998766146889
Q ss_pred HHHHHH
Q ss_conf 999999
Q 002729 443 TCNLLH 448 (887)
Q Consensus 443 ~~~l~~ 448 (887)
+..+..
T Consensus 486 ~~~~~~ 491 (514)
T 2gw1_A 486 LQAITF 491 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=306.07 Aligned_cols=451 Identities=17% Similarity=0.194 Sum_probs=384.2
Q ss_pred HHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 9999999999985199----864699999999986099999999999998419993889999999999909999999999
Q 002729 15 YKQALEHSNSVYERNP----LRTDNLLLLGAIYYQLHDYDMCIARNEEALRLEPRFAECYGNMANAWKEKGDIDLAIRYY 90 (887)
Q Consensus 15 ~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 90 (887)
.+.+...+..+....+ .....+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp -----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 87899607766389951407889999999999998642999999999998638998489999999999868999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99983099949999999999998399699999999999719998999999999999839958999999999862998099
Q 002729 91 LVAIELRPNFADAWSNLASAYMRKGRLNEAAQCCRQALALNPLLVDAHSNLGNLMKAQGLVQEAYSCYLEALRIQPTFAI 170 (887)
Q Consensus 91 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 170 (887)
+++++.+|++..++..+|.++...|++++|+..++ .+...|+...... ..+...+...+|...+++++...|....
T Consensus 83 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 83 TKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASI---EPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99986098628999999999998389999999999-9864878785889---9999877898899999999974745454
Q ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH--------HHCCCHHHHHHHHHHHHHHCCC----
Q ss_conf ---9999999999729988999999999950999878998899999--------9859938999999999961998----
Q 002729 171 ---AWSNLAGLFMESGDLNRALQYYKEAVKLKPTFPDAYLNLGNVY--------KALGMPQEAIMCYQRAVQTRPN---- 235 (887)
Q Consensus 171 ---~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~~p~---- 235 (887)
........+....+...+...+.+.....+........+...+ ...+++++|+..++++++..|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 34506757999997447499999876325646178999999987887640206888879999999999999878774044
Q ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf ----4689639999998399599999999998229996999998999999769989999999999850999968887599
Q 002729 236 ----AIAFGNLASTYYERGQADMAILYYKQAIGCDPRFLEAYNNLGNALKDVGRVDEAIQCYNQCLSLQPSHPQALTNLG 311 (887)
Q Consensus 236 ----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 311 (887)
...+..++..+...|++++|+..+++++...|. ...+..+|.++...|++++|+..++++++..|+++.++..+|
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 5999999999999987545578999999999866987-469999999999803799999999997545999879999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99997289269999999998316899156743999999829999999999999810999888999999999990998999
Q 002729 312 NIYMEWNMLPAAASYYKATLAVTTGLSAPFNNLAVIYKQQGNYADAISCYNEVLRIDPLAADGLVNRGNTYKEIGRVTDA 391 (887)
Q Consensus 312 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 391 (887)
.++...|++++|+..+++++...|.+...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 99986689999999999999859997799999999999847799999999999873999859999999999883788999
Q ss_pred HHHHHHHHHCCCCCH------HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999999995099929------9999999999967----------998999999999997099996899999997411179
Q 002729 392 IQDYIRAITIRPTMA------EAHANLASAYKDS----------GHVEAAIKSYKQALLLRPDFPEATCNLLHTLQCVCS 455 (887)
Q Consensus 392 ~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 455 (887)
+..++++++..|++. ..+..++.++... |++++|+..|+++++..|+++.++..++.++...|+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 99999998709762446888999998899999976401002247579999999999997499978999999999998514
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 325868899999999
Q 002729 456 WEDRDRMFSEVEGII 470 (887)
Q Consensus 456 ~~~a~~~~~~~~~~~ 470 (887)
+++|...++++.++.
T Consensus 478 ~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 478 IDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999868
Done!