Query 002730
Match_columns 887
No_of_seqs 425 out of 1922
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002730.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002730hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0244 Kinesin-like protein [ 100.0 5E-134 1E-138 1167.9 42.5 779 16-871 1-805 (913)
2 KOG0243 Kinesin-like protein [ 100.0 1.6E-91 3.6E-96 825.1 64.7 399 6-434 47-470 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 1.1E-94 2.3E-99 834.1 33.7 393 7-427 3-420 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 1.8E-94 3.9E-99 820.6 29.6 356 6-397 3-367 (574)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 3.6E-87 7.7E-92 739.4 43.0 337 5-379 4-344 (607)
6 PLN03188 kinesin-12 family pro 100.0 9E-86 2E-90 782.2 38.3 355 7-396 97-463 (1320)
7 KOG0242 Kinesin-like protein [ 100.0 5.4E-83 1.2E-87 754.8 31.5 348 7-397 5-363 (675)
8 KOG0241 Kinesin-like protein [ 100.0 2.7E-82 5.8E-87 716.6 33.2 361 7-397 3-382 (1714)
9 cd01373 KISc_KLP2_like Kinesin 100.0 1E-81 2.2E-86 701.2 34.1 325 9-366 2-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 3.3E-81 7.1E-86 697.3 33.3 322 9-366 1-338 (338)
11 cd01368 KISc_KIF23_like Kinesi 100.0 6.4E-79 1.4E-83 680.3 34.6 326 9-364 2-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.1E-78 2.4E-83 682.3 35.3 337 8-373 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.6E-78 3.4E-83 680.7 34.8 333 8-375 2-352 (352)
14 cd01372 KISc_KIF4 Kinesin moto 100.0 2.8E-78 6E-83 676.3 34.9 337 8-367 1-341 (341)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 1.1E-76 2.4E-81 660.4 33.7 323 9-366 2-333 (333)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.7E-76 3.6E-81 657.6 35.0 320 8-366 2-325 (325)
17 cd01367 KISc_KIF2_like Kinesin 100.0 1E-76 2.2E-81 657.3 32.8 307 9-364 2-322 (322)
18 cd01376 KISc_KID_like Kinesin 100.0 2.7E-75 5.9E-80 645.5 32.5 308 9-364 1-319 (319)
19 cd01374 KISc_CENP_E Kinesin mo 100.0 9.1E-75 2E-79 642.4 33.3 317 9-366 1-321 (321)
20 cd01375 KISc_KIF9_like Kinesin 100.0 1.2E-74 2.7E-79 643.8 33.0 319 9-364 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 7.5E-73 1.6E-77 629.5 34.7 321 8-369 2-329 (329)
22 smart00129 KISc Kinesin motor, 100.0 2E-72 4.4E-77 627.9 34.6 327 9-373 1-335 (335)
23 KOG0239 Kinesin (KAR3 subfamil 100.0 1.7E-73 3.7E-78 671.3 25.5 324 8-372 314-646 (670)
24 PF00225 Kinesin: Kinesin moto 100.0 9.6E-71 2.1E-75 614.5 26.0 322 15-366 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 2.9E-70 6.2E-75 602.2 28.8 323 6-371 206-546 (676)
26 cd00106 KISc Kinesin motor dom 100.0 2.4E-69 5.1E-74 601.6 33.8 318 9-364 1-328 (328)
27 KOG0247 Kinesin-like protein [ 100.0 2.6E-68 5.6E-73 602.2 35.8 334 9-375 32-445 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.3E-63 2.7E-68 585.9 29.2 290 45-374 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 5.4E-50 1.2E-54 410.5 18.9 179 64-345 8-186 (186)
30 KOG0612 Rho-associated, coiled 98.6 0.00012 2.5E-09 90.0 36.3 208 569-813 565-786 (1317)
31 KOG0161 Myosin class II heavy 98.2 0.012 2.6E-07 77.9 40.6 153 501-668 1061-1230(1930)
32 COG5059 KIP1 Kinesin-like prot 98.2 2.7E-08 5.9E-13 118.4 -9.4 255 3-305 300-566 (568)
33 KOG0161 Myosin class II heavy 98.1 0.039 8.4E-07 73.2 43.5 20 78-97 165-184 (1930)
34 TIGR02169 SMC_prok_A chromosom 97.7 0.42 9.1E-06 62.6 44.7 14 85-98 27-40 (1164)
35 PF12128 DUF3584: Protein of u 97.6 0.53 1.2E-05 61.9 44.0 129 499-628 317-454 (1201)
36 PF07888 CALCOCO1: Calcium bin 97.6 0.2 4.4E-06 58.9 34.4 26 536-561 291-316 (546)
37 KOG0964 Structural maintenance 97.6 0.28 6.2E-06 60.1 35.3 316 498-849 187-520 (1200)
38 PRK11637 AmiB activator; Provi 97.5 0.094 2E-06 61.1 30.1 64 598-672 180-243 (428)
39 PF00038 Filament: Intermediat 97.5 0.21 4.6E-06 55.5 31.4 108 525-636 44-151 (312)
40 PRK02224 chromosome segregatio 97.4 0.79 1.7E-05 58.5 44.7 29 738-766 607-635 (880)
41 PRK11637 AmiB activator; Provi 97.4 0.23 4.9E-06 58.0 31.5 46 616-668 208-253 (428)
42 PRK03918 chromosome segregatio 97.3 0.95 2.1E-05 57.7 39.3 17 79-98 24-40 (880)
43 KOG4643 Uncharacterized coiled 97.3 0.95 2.1E-05 55.9 41.9 118 499-628 298-434 (1195)
44 PRK02224 chromosome segregatio 97.2 1.3 2.9E-05 56.4 47.0 14 85-98 27-40 (880)
45 PF09726 Macoilin: Transmembra 97.1 0.12 2.6E-06 63.3 26.2 19 378-396 417-435 (697)
46 TIGR02168 SMC_prok_B chromosom 97.1 0.32 6.9E-06 63.6 32.2 15 84-98 26-40 (1179)
47 KOG4643 Uncharacterized coiled 97.1 1.3 2.7E-05 54.9 37.2 204 501-732 407-623 (1195)
48 TIGR00606 rad50 rad50. This fa 97.1 2 4.4E-05 57.2 46.3 53 498-560 795-847 (1311)
49 KOG4673 Transcription factor T 97.1 0.46 1E-05 56.1 28.8 131 527-677 401-538 (961)
50 TIGR02169 SMC_prok_A chromosom 97.1 1.9 4E-05 56.6 45.6 22 537-558 260-281 (1164)
51 COG1196 Smc Chromosome segrega 97.0 2.3 5E-05 56.0 39.0 41 726-766 385-426 (1163)
52 TIGR02168 SMC_prok_B chromosom 97.0 2.4 5.1E-05 55.6 38.7 18 50-67 25-42 (1179)
53 PF10174 Cast: RIM-binding pro 97.0 1.7 3.8E-05 53.9 42.0 96 574-669 468-576 (775)
54 COG1196 Smc Chromosome segrega 96.9 3 6.6E-05 54.9 39.0 30 66-98 12-41 (1163)
55 PF07888 CALCOCO1: Calcium bin 96.8 1.8 3.8E-05 51.3 40.7 24 743-766 430-453 (546)
56 KOG0250 DNA repair protein RAD 96.8 0.63 1.4E-05 58.3 27.8 65 795-874 660-724 (1074)
57 TIGR00606 rad50 rad50. This fa 96.7 4.3 9.3E-05 54.2 48.8 34 600-633 848-881 (1311)
58 PF00261 Tropomyosin: Tropomyo 96.7 0.27 5.8E-06 52.7 21.5 95 534-632 133-227 (237)
59 PF09726 Macoilin: Transmembra 96.7 0.5 1.1E-05 58.1 26.2 38 727-766 614-651 (697)
60 PF05667 DUF812: Protein of un 96.7 1.2 2.6E-05 53.8 28.6 42 725-766 486-527 (594)
61 COG0556 UvrB Helicase subunit 96.6 0.0032 6.9E-08 72.4 6.5 95 46-146 3-101 (663)
62 KOG0977 Nuclear envelope prote 96.5 1.9 4.1E-05 51.1 28.0 83 575-660 145-234 (546)
63 KOG0933 Structural maintenance 96.5 3.1 6.7E-05 51.8 30.3 44 597-640 894-937 (1174)
64 PRK03918 chromosome segregatio 96.5 4.3 9.3E-05 51.8 47.2 29 532-560 304-332 (880)
65 KOG4674 Uncharacterized conser 96.5 5.6 0.00012 53.0 43.1 122 638-764 1064-1194(1822)
66 KOG4674 Uncharacterized conser 96.5 5.8 0.00013 53.0 46.5 160 535-694 689-858 (1822)
67 KOG0996 Structural maintenance 96.3 5 0.00011 50.9 34.0 159 502-660 405-575 (1293)
68 PF12128 DUF3584: Protein of u 96.3 6.9 0.00015 51.8 38.1 88 47-146 55-151 (1201)
69 PF10174 Cast: RIM-binding pro 96.3 4.9 0.00011 50.1 43.7 249 605-875 332-598 (775)
70 PHA02562 46 endonuclease subun 96.2 3.6 7.9E-05 49.5 29.6 16 83-98 29-44 (562)
71 KOG0933 Structural maintenance 96.1 5.6 0.00012 49.6 30.7 31 736-766 905-935 (1174)
72 PF09755 DUF2046: Uncharacteri 96.1 2.8 6.1E-05 46.1 26.2 93 605-697 174-278 (310)
73 KOG0996 Structural maintenance 95.9 7.6 0.00016 49.3 43.8 83 578-663 412-501 (1293)
74 KOG2129 Uncharacterized conser 95.9 1.6 3.5E-05 49.0 21.9 78 577-654 207-298 (552)
75 KOG4673 Transcription factor T 95.8 5.9 0.00013 47.3 32.4 89 568-656 399-503 (961)
76 KOG0963 Transcription factor/C 95.7 6.3 0.00014 46.9 27.5 66 496-561 183-268 (629)
77 KOG0977 Nuclear envelope prote 95.7 6.2 0.00013 46.8 31.0 198 535-765 162-384 (546)
78 COG1579 Zn-ribbon protein, pos 95.7 1.6 3.4E-05 46.6 20.5 116 575-695 56-171 (239)
79 PRK04863 mukB cell division pr 95.7 12 0.00026 50.1 32.7 85 578-665 383-473 (1486)
80 KOG0964 Structural maintenance 95.6 9.2 0.0002 47.7 29.6 25 574-598 359-383 (1200)
81 PHA02562 46 endonuclease subun 95.6 3.3 7.1E-05 49.9 25.6 123 532-663 217-352 (562)
82 PF05667 DUF812: Protein of un 95.3 9.7 0.00021 46.2 29.5 21 502-522 370-390 (594)
83 COG4942 Membrane-bound metallo 95.0 9 0.00019 44.1 30.7 75 502-596 38-112 (420)
84 KOG0976 Rho/Rac1-interacting s 94.7 14 0.0003 45.1 39.0 92 597-696 381-472 (1265)
85 KOG1029 Endocytic adaptor prot 94.7 14 0.00031 44.9 28.3 67 736-826 492-558 (1118)
86 PRK01156 chromosome segregatio 94.5 20 0.00043 46.0 46.9 16 83-98 25-40 (895)
87 KOG0971 Microtubule-associated 94.5 17 0.00037 45.0 29.8 191 633-852 289-485 (1243)
88 KOG0250 DNA repair protein RAD 94.4 20 0.00044 45.5 34.6 91 576-669 279-372 (1074)
89 PF12718 Tropomyosin_1: Tropom 94.2 6 0.00013 39.0 18.6 107 499-622 18-128 (143)
90 KOG0995 Centromere-associated 94.2 16 0.00034 43.3 32.2 154 606-765 305-460 (581)
91 KOG0971 Microtubule-associated 94.1 21 0.00045 44.3 34.2 45 650-698 398-442 (1243)
92 KOG0976 Rho/Rac1-interacting s 94.0 20 0.00043 43.8 39.7 55 575-635 288-342 (1265)
93 PF00308 Bac_DnaA: Bacterial d 93.9 0.029 6.4E-07 59.2 2.0 49 46-98 3-51 (219)
94 KOG0994 Extracellular matrix g 93.9 25 0.00055 44.7 33.5 35 663-697 1711-1745(1758)
95 COG1579 Zn-ribbon protein, pos 93.8 9.5 0.00021 40.8 20.3 138 500-683 36-173 (239)
96 COG4942 Membrane-bound metallo 93.7 16 0.00036 42.0 27.8 21 499-519 63-83 (420)
97 KOG1029 Endocytic adaptor prot 93.7 22 0.00047 43.4 35.1 80 612-695 440-519 (1118)
98 COG2805 PilT Tfp pilus assembl 93.7 0.035 7.5E-07 60.3 2.0 33 66-98 110-142 (353)
99 COG3883 Uncharacterized protei 93.6 11 0.00025 40.7 20.7 43 626-668 175-217 (265)
100 PF08826 DMPK_coil: DMPK coile 93.5 0.082 1.8E-06 44.1 3.5 42 785-828 2-43 (61)
101 PRK06893 DNA replication initi 93.4 0.042 9.1E-07 58.4 2.2 46 46-98 11-56 (229)
102 PF14988 DUF4515: Domain of un 93.4 12 0.00025 39.3 24.1 79 528-611 40-123 (206)
103 PF05010 TACC: Transforming ac 93.4 12 0.00026 39.3 20.6 112 533-669 60-182 (207)
104 PF15070 GOLGA2L5: Putative go 93.3 26 0.00055 42.9 48.1 33 528-560 115-150 (617)
105 KOG0946 ER-Golgi vesicle-tethe 93.1 18 0.00039 44.4 22.9 15 676-690 917-931 (970)
106 PF04849 HAP1_N: HAP1 N-termin 93.1 17 0.00037 40.2 29.1 138 537-688 162-302 (306)
107 PF09755 DUF2046: Uncharacteri 92.9 18 0.00038 40.0 28.8 23 676-698 181-203 (310)
108 PRK09039 hypothetical protein; 92.8 11 0.00024 42.7 20.4 75 532-624 78-152 (343)
109 PRK11281 hypothetical protein; 92.7 16 0.00036 47.5 23.8 55 408-462 124-179 (1113)
110 PF00261 Tropomyosin: Tropomyo 92.5 17 0.00037 38.9 22.3 14 535-548 92-105 (237)
111 PF12325 TMF_TATA_bd: TATA ele 92.5 3.5 7.6E-05 39.4 13.3 88 536-631 31-118 (120)
112 PF00038 Filament: Intermediat 92.3 22 0.00047 39.5 38.6 39 727-765 266-304 (312)
113 KOG4809 Rab6 GTPase-interactin 92.2 29 0.00063 40.8 27.5 169 525-695 418-609 (654)
114 KOG4403 Cell surface glycoprot 92.2 10 0.00022 43.1 18.2 41 723-764 335-377 (575)
115 PRK06620 hypothetical protein; 92.0 0.069 1.5E-06 56.3 1.4 48 46-98 11-61 (214)
116 TIGR03007 pepcterm_ChnLen poly 92.0 26 0.00056 41.6 23.4 111 499-609 165-286 (498)
117 PF08317 Spc7: Spc7 kinetochor 91.6 11 0.00025 42.2 18.6 28 607-634 235-262 (325)
118 KOG0963 Transcription factor/C 91.3 40 0.00086 40.5 27.0 27 740-766 495-521 (629)
119 PRK09039 hypothetical protein; 91.2 20 0.00042 40.7 20.0 32 605-636 168-199 (343)
120 COG2804 PulE Type II secretory 90.8 0.12 2.6E-06 60.1 1.9 31 70-100 247-277 (500)
121 PRK14086 dnaA chromosomal repl 90.7 0.12 2.5E-06 62.2 1.7 49 46-98 283-331 (617)
122 PRK09087 hypothetical protein; 90.4 0.15 3.3E-06 54.1 2.1 46 46-98 16-61 (226)
123 PF09787 Golgin_A5: Golgin sub 90.4 47 0.001 39.8 31.5 134 605-765 291-427 (511)
124 PRK01156 chromosome segregatio 90.1 67 0.0015 41.2 41.6 16 52-67 27-42 (895)
125 TIGR01005 eps_transp_fam exopo 90.0 21 0.00046 44.8 20.9 64 499-562 198-264 (754)
126 PRK14088 dnaA chromosomal repl 89.9 0.16 3.5E-06 59.4 1.9 48 46-98 100-147 (440)
127 PF12325 TMF_TATA_bd: TATA ele 89.8 11 0.00023 36.1 13.8 53 370-434 7-59 (120)
128 KOG0994 Extracellular matrix g 89.8 71 0.0015 41.0 40.2 80 353-443 1177-1256(1758)
129 KOG0980 Actin-binding protein 89.3 68 0.0015 40.1 32.5 148 538-700 329-479 (980)
130 KOG0804 Cytoplasmic Zn-finger 89.2 12 0.00027 42.9 15.7 39 193-237 120-159 (493)
131 COG1474 CDC6 Cdc6-related prot 89.1 0.59 1.3E-05 53.3 5.6 53 71-141 31-84 (366)
132 PRK05642 DNA replication initi 89.0 0.25 5.5E-06 52.7 2.5 45 46-98 14-62 (234)
133 COG3883 Uncharacterized protei 88.9 38 0.00083 36.8 23.8 10 535-544 87-96 (265)
134 KOG0962 DNA repair protein RAD 88.9 90 0.002 41.0 34.8 258 499-765 241-552 (1294)
135 PF13851 GAS: Growth-arrest sp 88.8 33 0.00071 35.9 21.7 23 538-560 110-132 (201)
136 PF04851 ResIII: Type III rest 88.8 0.25 5.4E-06 49.4 2.1 32 67-98 10-42 (184)
137 PRK04778 septation ring format 88.5 68 0.0015 39.0 37.0 55 795-854 454-508 (569)
138 COG5185 HEC1 Protein involved 88.1 29 0.00063 40.1 17.6 29 535-563 295-323 (622)
139 PRK00149 dnaA chromosomal repl 88.0 0.28 6E-06 57.6 2.2 49 46-98 117-165 (450)
140 PF15254 CCDC14: Coiled-coil d 88.0 35 0.00076 41.9 19.2 65 498-562 397-468 (861)
141 PF01576 Myosin_tail_1: Myosin 87.7 0.16 3.5E-06 64.1 0.0 110 535-652 201-314 (859)
142 TIGR00362 DnaA chromosomal rep 87.7 0.3 6.4E-06 56.5 2.1 49 46-98 105-153 (405)
143 PF05701 WEMBL: Weak chloropla 87.5 74 0.0016 38.3 45.4 139 531-669 168-309 (522)
144 PRK12377 putative replication 87.4 0.37 8E-06 52.0 2.5 49 47-98 70-118 (248)
145 PF14988 DUF4515: Domain of un 87.4 41 0.00089 35.3 29.5 70 578-650 54-123 (206)
146 PRK00411 cdc6 cell division co 87.4 0.46 9.9E-06 54.5 3.4 27 72-98 45-72 (394)
147 TIGR00631 uvrb excinuclease AB 87.1 0.58 1.3E-05 57.4 4.3 93 48-146 2-98 (655)
148 COG0593 DnaA ATPase involved i 87.0 0.32 7E-06 55.8 1.8 49 45-98 81-130 (408)
149 PRK14087 dnaA chromosomal repl 86.7 0.34 7.4E-06 56.8 1.9 48 47-98 111-158 (450)
150 TIGR03017 EpsF chain length de 86.7 71 0.0015 37.3 21.5 119 500-618 176-302 (444)
151 TIGR03420 DnaA_homol_Hda DnaA 86.5 0.4 8.6E-06 50.3 2.1 46 46-98 10-55 (226)
152 PRK06526 transposase; Provisio 86.5 0.37 8E-06 52.2 1.9 20 78-99 97-116 (254)
153 PRK08116 hypothetical protein; 86.4 0.36 7.9E-06 52.7 1.8 50 46-98 80-131 (268)
154 PRK08084 DNA replication initi 86.4 0.41 8.8E-06 51.2 2.1 47 45-98 16-62 (235)
155 cd00009 AAA The AAA+ (ATPases 86.3 0.49 1.1E-05 44.7 2.4 30 69-98 7-36 (151)
156 PF15066 CAGE1: Cancer-associa 86.2 73 0.0016 37.0 27.2 45 616-660 460-504 (527)
157 PF00437 T2SE: Type II/IV secr 86.0 0.45 9.7E-06 51.7 2.3 30 69-98 112-144 (270)
158 PF05622 HOOK: HOOK protein; 85.9 0.23 5.1E-06 61.7 0.0 21 576-596 457-477 (713)
159 TIGR02928 orc1/cdc6 family rep 85.8 0.5 1.1E-05 53.5 2.6 27 72-98 30-57 (365)
160 PF05557 MAD: Mitotic checkpoi 85.5 5.6 0.00012 49.7 11.7 40 646-685 604-643 (722)
161 PRK07952 DNA replication prote 85.2 0.55 1.2E-05 50.5 2.4 50 46-98 67-116 (244)
162 PF09728 Taxilin: Myosin-like 85.2 69 0.0015 35.8 32.8 77 607-687 186-272 (309)
163 smart00787 Spc7 Spc7 kinetocho 85.0 52 0.0011 36.8 17.9 53 606-658 229-281 (312)
164 PRK08727 hypothetical protein; 84.9 0.5 1.1E-05 50.4 2.0 44 46-98 14-58 (233)
165 PF08581 Tup_N: Tup N-terminal 84.6 6.4 0.00014 34.8 8.3 50 572-621 26-76 (79)
166 COG4372 Uncharacterized protei 84.5 79 0.0017 35.9 30.2 81 293-396 8-91 (499)
167 PRK08903 DnaA regulatory inact 84.3 0.5 1.1E-05 49.9 1.6 47 46-98 13-59 (227)
168 KOG1937 Uncharacterized conser 84.1 89 0.0019 36.2 25.2 145 587-765 271-424 (521)
169 TIGR01420 pilT_fam pilus retra 84.0 0.7 1.5E-05 52.3 2.7 31 68-98 109-139 (343)
170 COG5008 PilU Tfp pilus assembl 84.0 0.74 1.6E-05 49.4 2.6 43 69-111 115-159 (375)
171 PF04111 APG6: Autophagy prote 83.9 19 0.00041 40.4 13.9 31 638-668 103-133 (314)
172 KOG0612 Rho-associated, coiled 83.9 1.5E+02 0.0032 38.6 38.2 23 76-98 83-105 (1317)
173 PRK10436 hypothetical protein; 83.9 0.55 1.2E-05 55.1 1.9 27 72-98 209-235 (462)
174 PF13245 AAA_19: Part of AAA d 83.7 0.58 1.3E-05 40.9 1.5 25 73-98 3-27 (76)
175 TIGR02533 type_II_gspE general 83.6 0.61 1.3E-05 55.2 2.1 28 72-99 233-260 (486)
176 TIGR02538 type_IV_pilB type IV 83.4 0.56 1.2E-05 56.7 1.7 27 72-98 307-333 (564)
177 PRK08181 transposase; Validate 83.0 0.84 1.8E-05 49.8 2.7 19 78-98 105-123 (269)
178 cd00046 DEXDc DEAD-like helica 82.9 0.5 1.1E-05 44.1 0.8 15 84-98 3-17 (144)
179 KOG0999 Microtubule-associated 82.8 1.1E+02 0.0024 36.3 25.9 19 378-396 7-25 (772)
180 KOG0995 Centromere-associated 82.7 1.2E+02 0.0025 36.4 40.4 89 499-588 336-431 (581)
181 PF05701 WEMBL: Weak chloropla 82.5 1.2E+02 0.0026 36.5 39.1 42 628-669 373-414 (522)
182 PF10186 Atg14: UV radiation r 82.5 80 0.0017 34.5 18.6 26 536-561 21-46 (302)
183 PRK04778 septation ring format 82.5 1.3E+02 0.0027 36.7 45.4 85 540-624 254-339 (569)
184 TIGR01005 eps_transp_fam exopo 82.4 1.5E+02 0.0032 37.4 23.8 29 410-438 192-220 (754)
185 PF12718 Tropomyosin_1: Tropom 82.3 54 0.0012 32.4 20.1 55 583-637 54-108 (143)
186 PF08172 CASP_C: CASP C termin 82.3 18 0.00039 39.0 12.4 47 570-633 85-131 (248)
187 cd01131 PilT Pilus retraction 82.3 0.54 1.2E-05 48.8 0.9 18 81-98 1-18 (198)
188 KOG0804 Cytoplasmic Zn-finger 82.3 29 0.00062 40.0 14.2 30 629-658 416-445 (493)
189 TIGR02525 plasmid_TraJ plasmid 82.1 0.74 1.6E-05 52.6 1.9 26 72-98 141-166 (372)
190 PF15294 Leu_zip: Leucine zipp 82.0 44 0.00095 36.6 15.1 23 671-693 255-277 (278)
191 PF09730 BicD: Microtubule-ass 81.8 1.4E+02 0.0029 37.3 20.8 28 534-561 61-88 (717)
192 PF05673 DUF815: Protein of un 81.7 1.1 2.4E-05 48.0 2.9 46 47-98 23-69 (249)
193 KOG0993 Rab5 GTPase effector R 81.5 51 0.0011 37.5 15.5 41 628-668 142-182 (542)
194 PF05010 TACC: Transforming ac 81.5 75 0.0016 33.4 25.7 66 586-651 81-146 (207)
195 KOG2129 Uncharacterized conser 81.5 1.1E+02 0.0023 35.2 18.8 97 535-641 208-310 (552)
196 TIGR02524 dot_icm_DotB Dot/Icm 81.4 0.79 1.7E-05 52.2 1.8 23 76-98 129-151 (358)
197 TIGR02782 TrbB_P P-type conjug 81.4 0.57 1.2E-05 52.0 0.6 28 70-98 122-149 (299)
198 PF08614 ATG16: Autophagy prot 81.3 20 0.00043 37.2 12.0 21 576-596 72-92 (194)
199 KOG0018 Structural maintenance 81.1 1.8E+02 0.0038 37.5 32.8 128 497-635 776-903 (1141)
200 PF08317 Spc7: Spc7 kinetochor 80.6 1E+02 0.0023 34.6 23.0 55 534-596 148-202 (325)
201 PF13401 AAA_22: AAA domain; P 80.6 0.56 1.2E-05 44.4 0.3 18 81-98 4-21 (131)
202 PRK12422 chromosomal replicati 80.6 1 2.3E-05 52.7 2.5 49 46-98 106-158 (445)
203 PF10168 Nup88: Nuclear pore c 80.6 61 0.0013 40.5 17.7 24 672-695 688-711 (717)
204 PF14992 TMCO5: TMCO5 family 80.5 58 0.0012 35.7 15.3 114 535-663 63-182 (280)
205 smart00382 AAA ATPases associa 80.3 0.7 1.5E-05 43.1 0.8 17 82-98 3-19 (148)
206 COG5185 HEC1 Protein involved 80.1 1.3E+02 0.0027 35.2 32.5 62 607-668 485-546 (622)
207 PF04156 IncA: IncA protein; 80.1 62 0.0013 33.1 15.2 21 610-630 159-179 (191)
208 PRK06835 DNA replication prote 80.0 0.95 2.1E-05 50.9 1.8 29 69-98 172-200 (329)
209 PF00270 DEAD: DEAD/DEAH box h 79.6 0.99 2.1E-05 44.6 1.6 25 72-98 7-31 (169)
210 PF01935 DUF87: Domain of unkn 79.5 0.77 1.7E-05 48.5 0.9 15 84-98 26-40 (229)
211 PF15619 Lebercilin: Ciliary p 79.4 83 0.0018 32.7 24.0 100 572-671 6-112 (194)
212 TIGR03185 DNA_S_dndD DNA sulfu 79.2 1.7E+02 0.0037 36.2 32.3 16 83-98 30-45 (650)
213 PF01576 Myosin_tail_1: Myosin 79.2 0.61 1.3E-05 59.1 0.0 68 598-665 102-169 (859)
214 PF10168 Nup88: Nuclear pore c 79.0 74 0.0016 39.8 17.7 20 263-282 370-389 (717)
215 cd01129 PulE-GspE PulE/GspE Th 78.8 1.2 2.5E-05 48.6 2.0 27 72-98 71-97 (264)
216 PRK06921 hypothetical protein; 78.7 1.3 2.7E-05 48.4 2.3 30 69-98 102-134 (266)
217 PTZ00112 origin recognition co 78.6 3.9 8.5E-05 51.1 6.4 28 71-98 769-798 (1164)
218 PF07926 TPR_MLP1_2: TPR/MLP1/ 78.3 68 0.0015 31.1 18.2 99 582-695 21-127 (132)
219 PF12846 AAA_10: AAA-like doma 78.3 0.84 1.8E-05 49.6 0.8 18 81-98 1-18 (304)
220 PRK08939 primosomal protein Dn 78.2 1.2 2.6E-05 49.5 2.0 50 48-99 124-174 (306)
221 PF13604 AAA_30: AAA domain; P 77.8 1.2 2.5E-05 46.3 1.6 27 72-98 9-35 (196)
222 COG1484 DnaC DNA replication p 77.7 1.5 3.2E-05 47.6 2.4 35 61-98 88-122 (254)
223 PF02841 GBP_C: Guanylate-bind 77.6 26 0.00057 38.8 12.3 111 498-622 186-297 (297)
224 PF10481 CENP-F_N: Cenp-F N-te 77.5 1.1E+02 0.0024 33.2 18.6 169 577-765 17-190 (307)
225 PRK10929 putative mechanosensi 77.2 2.5E+02 0.0054 37.0 34.8 28 408-435 105-132 (1109)
226 PLN03229 acetyl-coenzyme A car 77.0 2E+02 0.0043 35.8 21.5 14 383-396 433-446 (762)
227 COG2433 Uncharacterized conser 76.9 24 0.00053 42.1 11.9 57 536-597 437-493 (652)
228 KOG0980 Actin-binding protein 76.8 2.1E+02 0.0046 36.0 32.1 48 645-692 463-510 (980)
229 TIGR03017 EpsF chain length de 76.4 1.6E+02 0.0034 34.3 21.5 26 332-357 128-153 (444)
230 KOG0926 DEAH-box RNA helicase 76.3 1.8 3.9E-05 52.7 2.7 19 80-98 270-288 (1172)
231 PF04156 IncA: IncA protein; 76.2 69 0.0015 32.8 14.2 13 503-515 82-94 (191)
232 smart00053 DYNc Dynamin, GTPas 76.1 5.1 0.00011 43.0 5.9 16 83-98 28-43 (240)
233 PF10146 zf-C4H2: Zinc finger- 75.4 1E+02 0.0022 32.9 15.3 54 536-601 2-55 (230)
234 PF10481 CENP-F_N: Cenp-F N-te 75.4 41 0.00089 36.3 12.1 30 535-564 18-47 (307)
235 PF09730 BicD: Microtubule-ass 75.3 2.2E+02 0.0048 35.5 32.1 160 536-696 266-453 (717)
236 PF08614 ATG16: Autophagy prot 75.3 21 0.00045 37.0 10.0 25 536-560 159-183 (194)
237 PF01637 Arch_ATPase: Archaeal 75.0 1.3 2.9E-05 45.9 1.1 29 70-98 9-37 (234)
238 PRK13833 conjugal transfer pro 75.0 1.1 2.4E-05 50.1 0.6 27 71-98 135-161 (323)
239 PF11559 ADIP: Afadin- and alp 74.9 90 0.002 30.8 15.2 100 571-670 45-148 (151)
240 PRK13894 conjugal transfer ATP 74.9 1.5 3.3E-05 49.0 1.7 27 71-98 139-165 (319)
241 PF13479 AAA_24: AAA domain 74.4 1.4 3.1E-05 46.2 1.2 20 81-100 3-22 (213)
242 PF01695 IstB_IS21: IstB-like 74.3 1.9 4.1E-05 44.1 2.0 17 82-98 48-64 (178)
243 PF00448 SRP54: SRP54-type pro 74.2 1.2 2.6E-05 46.2 0.6 16 83-98 3-18 (196)
244 KOG0999 Microtubule-associated 74.1 2E+02 0.0043 34.3 35.2 131 499-629 12-169 (772)
245 KOG4657 Uncharacterized conser 73.7 1.3E+02 0.0027 31.9 16.9 21 666-686 126-146 (246)
246 KOG1853 LIS1-interacting prote 73.2 1.4E+02 0.003 32.1 17.5 77 570-647 104-184 (333)
247 PF00004 AAA: ATPase family as 73.1 1.4 2.9E-05 41.6 0.6 15 84-98 1-15 (132)
248 PF12795 MscS_porin: Mechanose 73.1 1.4E+02 0.003 32.0 16.9 206 349-596 22-229 (240)
249 PF15070 GOLGA2L5: Putative go 73.1 2.4E+02 0.0051 34.8 38.8 63 538-601 83-145 (617)
250 PRK04863 mukB cell division pr 72.9 3.6E+02 0.0078 36.8 40.6 35 793-827 562-596 (1486)
251 cd01130 VirB11-like_ATPase Typ 72.9 2 4.3E-05 44.0 1.8 29 69-98 14-42 (186)
252 PF05557 MAD: Mitotic checkpoi 72.8 1.1 2.5E-05 55.7 0.0 19 625-643 228-246 (722)
253 KOG2991 Splicing regulator [RN 72.5 64 0.0014 34.6 12.4 20 314-333 93-112 (330)
254 PF13207 AAA_17: AAA domain; P 72.4 1.5 3.3E-05 41.0 0.7 16 83-98 1-16 (121)
255 PF10146 zf-C4H2: Zinc finger- 72.2 89 0.0019 33.4 14.0 80 582-668 5-87 (230)
256 PRK10929 putative mechanosensi 72.2 3.3E+02 0.007 36.0 25.4 62 535-596 65-127 (1109)
257 KOG2991 Splicing regulator [RN 72.1 1.5E+02 0.0032 31.9 19.8 77 538-634 213-289 (330)
258 COG4962 CpaF Flp pilus assembl 71.5 2.2 4.7E-05 47.8 1.8 78 70-153 163-270 (355)
259 PF00769 ERM: Ezrin/radixin/mo 71.5 1.5E+02 0.0033 31.9 17.1 91 572-672 6-99 (246)
260 smart00763 AAA_PrkA PrkA AAA d 71.2 5.7 0.00012 45.1 5.0 47 46-98 44-95 (361)
261 PHA02544 44 clamp loader, smal 70.9 2.4 5.1E-05 47.1 2.0 21 78-98 39-60 (316)
262 PF09744 Jnk-SapK_ap_N: JNK_SA 70.8 94 0.002 31.3 12.9 68 573-640 84-155 (158)
263 PF13086 AAA_11: AAA domain; P 70.7 2.1 4.7E-05 44.3 1.5 25 73-98 10-34 (236)
264 PRK12402 replication factor C 70.6 2.8 6.1E-05 46.7 2.5 21 78-98 33-53 (337)
265 PF06309 Torsin: Torsin; Inte 70.5 3.7 8.1E-05 39.6 2.9 41 68-121 36-80 (127)
266 PLN00020 ribulose bisphosphate 70.4 3.1 6.7E-05 47.3 2.7 51 47-98 111-165 (413)
267 KOG1899 LAR transmembrane tyro 70.1 2.6E+02 0.0056 33.9 18.8 15 675-689 276-290 (861)
268 PRK11281 hypothetical protein; 69.8 3.6E+02 0.0079 35.6 27.5 35 576-610 126-161 (1113)
269 PF13191 AAA_16: AAA ATPase do 69.7 1.5 3.2E-05 44.1 -0.0 26 73-98 16-41 (185)
270 PRK06547 hypothetical protein; 69.6 3.3 7.2E-05 42.1 2.5 30 69-98 3-32 (172)
271 COG2433 Uncharacterized conser 69.6 81 0.0018 37.9 13.9 30 108-137 163-192 (652)
272 PF03962 Mnd1: Mnd1 family; I 69.4 72 0.0016 33.0 12.3 30 533-562 67-96 (188)
273 PF00580 UvrD-helicase: UvrD/R 69.2 2 4.3E-05 47.0 0.9 20 79-98 11-30 (315)
274 COG4372 Uncharacterized protei 69.0 2.1E+02 0.0046 32.6 26.3 8 833-840 373-380 (499)
275 KOG0989 Replication factor C, 68.7 3.6 7.8E-05 45.3 2.6 35 64-98 39-74 (346)
276 PF04111 APG6: Autophagy prote 68.5 70 0.0015 35.8 12.9 25 537-561 11-35 (314)
277 PRK09183 transposase/IS protei 68.3 2.7 5.9E-05 45.6 1.7 19 78-98 101-119 (259)
278 PRK13851 type IV secretion sys 68.3 2.1 4.5E-05 48.5 0.8 28 70-98 152-179 (344)
279 KOG2373 Predicted mitochondria 68.2 2.8 6.1E-05 46.6 1.7 27 71-98 261-290 (514)
280 PF05700 BCAS2: Breast carcino 68.1 1.7E+02 0.0036 31.0 16.5 79 537-630 138-217 (221)
281 PRK07003 DNA polymerase III su 67.8 6.4 0.00014 48.7 4.8 18 81-98 38-55 (830)
282 PRK13900 type IV secretion sys 67.7 2.8 6E-05 47.3 1.6 27 71-98 151-177 (332)
283 TIGR03007 pepcterm_ChnLen poly 67.6 2.6E+02 0.0057 33.1 27.2 107 332-438 118-230 (498)
284 PHA00729 NTP-binding motif con 67.6 3.9 8.4E-05 43.5 2.6 29 69-98 5-34 (226)
285 smart00487 DEXDc DEAD-like hel 67.5 3.4 7.3E-05 41.1 2.1 25 73-98 17-41 (201)
286 PF02562 PhoH: PhoH-like prote 67.2 3.5 7.5E-05 43.2 2.1 19 80-98 18-36 (205)
287 PRK03992 proteasome-activating 66.7 1.6 3.5E-05 50.2 -0.5 51 47-98 127-182 (389)
288 PRK10884 SH3 domain-containing 66.7 86 0.0019 32.9 12.3 24 538-561 89-112 (206)
289 TIGR03015 pepcterm_ATPase puta 66.6 3.4 7.3E-05 44.5 2.0 22 77-98 39-60 (269)
290 KOG1103 Predicted coiled-coil 66.4 2.2E+02 0.0048 31.8 22.6 135 564-702 136-281 (561)
291 TIGR02903 spore_lon_C ATP-depe 66.4 2.7 5.9E-05 51.3 1.3 43 47-98 150-192 (615)
292 COG1201 Lhr Lhr-like helicases 66.2 6.3 0.00014 49.3 4.4 25 72-98 30-54 (814)
293 PRK13764 ATPase; Provisional 66.0 3 6.5E-05 50.6 1.5 20 79-98 255-274 (602)
294 PRK12704 phosphodiesterase; Pr 65.9 3E+02 0.0065 33.2 20.6 164 497-669 37-200 (520)
295 PF05266 DUF724: Protein of un 65.9 1.4E+02 0.0031 30.9 13.5 59 603-672 125-183 (190)
296 PF01580 FtsK_SpoIIIE: FtsK/Sp 65.9 2.2 4.7E-05 44.3 0.3 16 83-98 40-55 (205)
297 COG1223 Predicted ATPase (AAA+ 65.8 2.6 5.7E-05 45.3 0.9 18 81-98 151-168 (368)
298 PRK10884 SH3 domain-containing 65.7 79 0.0017 33.2 11.7 20 577-596 92-111 (206)
299 TIGR03499 FlhF flagellar biosy 65.1 2.7 5.8E-05 46.2 0.9 16 83-98 196-211 (282)
300 cd00268 DEADc DEAD-box helicas 65.0 4 8.7E-05 41.8 2.1 24 73-98 30-53 (203)
301 PF13671 AAA_33: AAA domain; P 64.8 2.6 5.7E-05 40.5 0.6 15 84-98 2-16 (143)
302 PRK12723 flagellar biosynthesi 64.6 3 6.6E-05 47.9 1.2 18 81-98 174-191 (388)
303 smart00787 Spc7 Spc7 kinetocho 64.6 2.4E+02 0.0052 31.6 20.1 51 538-596 147-197 (312)
304 PF06785 UPF0242: Uncharacteri 64.6 2.4E+02 0.0052 31.6 16.6 150 380-585 100-252 (401)
305 PF07724 AAA_2: AAA domain (Cd 64.6 3 6.4E-05 42.4 1.0 17 82-98 4-20 (171)
306 PRK13342 recombination factor 64.4 3.6 7.7E-05 47.8 1.7 27 72-98 27-53 (413)
307 PF00769 ERM: Ezrin/radixin/mo 64.3 2.1E+02 0.0046 30.9 16.5 108 533-669 3-110 (246)
308 PRK15455 PrkA family serine pr 64.0 13 0.00028 44.9 6.1 67 50-121 75-163 (644)
309 KOG1003 Actin filament-coating 63.8 1.9E+02 0.0041 30.1 23.4 34 406-439 5-38 (205)
310 PF14662 CCDC155: Coiled-coil 63.8 1.9E+02 0.0041 30.0 18.0 26 536-561 9-34 (193)
311 PF00910 RNA_helicase: RNA hel 63.7 2.4 5.2E-05 39.4 0.1 15 84-98 1-15 (107)
312 KOG1899 LAR transmembrane tyro 63.5 3.4E+02 0.0074 33.0 19.3 45 584-631 180-224 (861)
313 PF13238 AAA_18: AAA domain; P 63.4 2.8 6E-05 39.2 0.5 15 84-98 1-15 (129)
314 PTZ00424 helicase 45; Provisio 62.9 4 8.6E-05 46.8 1.8 26 71-98 57-82 (401)
315 PTZ00361 26 proteosome regulat 62.6 5.2 0.00011 46.8 2.7 16 83-98 219-234 (438)
316 PF06048 DUF927: Domain of unk 62.5 6.2 0.00013 43.5 3.1 29 69-98 182-210 (286)
317 PF07728 AAA_5: AAA domain (dy 62.4 2.8 6.1E-05 40.4 0.3 15 84-98 2-16 (139)
318 TIGR03819 heli_sec_ATPase heli 62.2 10 0.00023 42.9 4.9 29 69-98 167-195 (340)
319 PRK14722 flhF flagellar biosyn 61.9 3.4 7.4E-05 47.2 1.0 18 81-98 137-154 (374)
320 COG1340 Uncharacterized archae 61.8 2.6E+02 0.0056 31.0 29.7 44 594-641 189-232 (294)
321 PF03215 Rad17: Rad17 cell cyc 61.8 4.6 0.0001 48.2 2.1 30 69-98 31-62 (519)
322 PTZ00454 26S protease regulato 61.4 2.3 5E-05 49.1 -0.5 52 46-98 140-196 (398)
323 TIGR02680 conserved hypothetic 61.2 5.7E+02 0.012 34.7 30.0 215 484-699 731-979 (1353)
324 KOG0953 Mitochondrial RNA heli 61.2 6.4 0.00014 46.4 2.9 43 83-125 193-238 (700)
325 PRK00409 recombination and DNA 61.2 87 0.0019 39.6 13.1 11 872-882 752-762 (782)
326 COG1219 ClpX ATP-dependent pro 61.1 3.7 8.1E-05 45.4 1.0 16 82-97 98-113 (408)
327 PF06120 Phage_HK97_TLTM: Tail 60.8 2.8E+02 0.006 31.0 19.7 129 498-631 44-177 (301)
328 PF07798 DUF1640: Protein of u 60.8 2E+02 0.0043 29.3 16.5 23 600-622 129-151 (177)
329 PRK13729 conjugal transfer pil 60.7 23 0.0005 41.4 7.3 44 578-624 76-119 (475)
330 COG1419 FlhF Flagellar GTP-bin 60.7 5.6 0.00012 45.6 2.3 18 81-98 203-220 (407)
331 TIGR02881 spore_V_K stage V sp 60.4 4.1 8.8E-05 44.1 1.2 18 81-98 42-59 (261)
332 PF02456 Adeno_IVa2: Adenoviru 60.4 3.5 7.5E-05 45.4 0.6 70 83-152 89-186 (369)
333 TIGR03319 YmdA_YtgF conserved 60.2 3.7E+02 0.0081 32.3 20.5 164 497-669 31-194 (514)
334 PRK11776 ATP-dependent RNA hel 59.9 5.2 0.00011 47.0 2.1 24 73-98 35-58 (460)
335 KOG0288 WD40 repeat protein Ti 59.7 1.7E+02 0.0036 33.7 13.4 59 498-557 9-70 (459)
336 PRK13341 recombination factor 59.7 5.4 0.00012 49.6 2.2 21 78-98 49-69 (725)
337 PF07693 KAP_NTPase: KAP famil 59.7 12 0.00025 41.5 4.8 58 67-141 6-63 (325)
338 PF05970 PIF1: PIF1-like helic 59.5 5.9 0.00013 45.2 2.3 35 60-98 5-39 (364)
339 TIGR00635 ruvB Holliday juncti 59.4 4.7 0.0001 44.5 1.5 16 83-98 32-47 (305)
340 PF07106 TBPIP: Tat binding pr 59.3 1.2E+02 0.0027 30.4 11.7 21 540-560 84-104 (169)
341 cd01126 TraG_VirD4 The TraG/Tr 58.9 4.1 8.9E-05 46.7 0.9 15 84-98 2-16 (384)
342 PF11365 DUF3166: Protein of u 58.7 85 0.0018 28.9 9.1 80 505-596 4-87 (96)
343 PF06414 Zeta_toxin: Zeta toxi 58.7 4.3 9.3E-05 42.0 1.0 19 80-98 14-32 (199)
344 PF02403 Seryl_tRNA_N: Seryl-t 58.7 90 0.002 28.9 9.8 40 727-766 26-65 (108)
345 KOG3433 Protein involved in me 58.7 1.3E+02 0.0029 30.7 11.2 71 576-650 79-153 (203)
346 PRK10536 hypothetical protein; 58.5 5.8 0.00013 43.0 1.9 18 81-98 74-91 (262)
347 KOG0946 ER-Golgi vesicle-tethe 58.4 4.7E+02 0.01 32.9 28.6 52 581-632 709-760 (970)
348 TIGR01000 bacteriocin_acc bact 58.3 3.7E+02 0.008 31.6 23.9 20 836-855 434-453 (457)
349 TIGR03345 VI_ClpV1 type VI sec 58.2 15 0.00032 46.8 5.7 17 82-98 597-613 (852)
350 PF06160 EzrA: Septation ring 58.1 4.2E+02 0.0091 32.2 32.7 117 533-668 304-420 (560)
351 PF13555 AAA_29: P-loop contai 57.8 4.5 9.8E-05 34.0 0.8 15 84-98 26-40 (62)
352 PLN03229 acetyl-coenzyme A car 57.7 4.7E+02 0.01 32.7 22.3 28 567-594 511-544 (762)
353 PRK11448 hsdR type I restricti 57.6 6.2 0.00013 51.5 2.3 41 66-116 419-459 (1123)
354 KOG0982 Centrosomal protein Nu 57.5 3.6E+02 0.0078 31.3 27.1 50 651-700 307-356 (502)
355 PF15619 Lebercilin: Ciliary p 57.5 2.4E+02 0.0053 29.3 22.4 16 500-515 17-32 (194)
356 PRK00409 recombination and DNA 57.2 2.5E+02 0.0055 35.6 16.2 30 609-638 548-577 (782)
357 PF14282 FlxA: FlxA-like prote 57.2 51 0.0011 30.8 7.7 21 535-555 19-39 (106)
358 KOG3859 Septins (P-loop GTPase 57.2 9.4 0.0002 41.4 3.1 24 75-98 36-59 (406)
359 PF05622 HOOK: HOOK protein; 57.0 3.5 7.7E-05 51.3 0.0 23 533-555 265-287 (713)
360 PF10267 Tmemb_cc2: Predicted 56.8 66 0.0014 37.1 10.1 71 528-598 4-75 (395)
361 PRK00440 rfc replication facto 56.8 7.3 0.00016 43.0 2.5 21 78-98 35-55 (319)
362 PRK11192 ATP-dependent RNA hel 56.8 6.2 0.00013 46.0 2.0 25 72-98 31-55 (434)
363 PRK11331 5-methylcytosine-spec 56.7 6.9 0.00015 45.7 2.3 28 331-362 320-347 (459)
364 TIGR00348 hsdR type I site-spe 56.6 7.6 0.00017 48.0 2.8 30 68-98 246-280 (667)
365 PF15397 DUF4618: Domain of un 56.6 3E+02 0.0064 30.0 24.7 26 630-655 189-214 (258)
366 COG1340 Uncharacterized archae 56.4 3.2E+02 0.0069 30.3 33.7 61 608-668 178-241 (294)
367 PF07058 Myosin_HC-like: Myosi 56.0 3.2E+02 0.007 30.3 14.6 97 503-602 36-139 (351)
368 PF12775 AAA_7: P-loop contain 55.9 6.1 0.00013 43.3 1.6 26 72-98 25-50 (272)
369 PHA02244 ATPase-like protein 55.5 11 0.00023 43.2 3.4 27 70-98 110-136 (383)
370 PF10205 KLRAQ: Predicted coil 55.4 99 0.0021 28.8 9.0 56 571-630 2-61 (102)
371 KOG0727 26S proteasome regulat 55.4 4.4 9.5E-05 43.3 0.4 118 9-127 98-249 (408)
372 PRK04837 ATP-dependent RNA hel 55.3 6.6 0.00014 45.6 1.9 24 73-98 39-62 (423)
373 PLN03025 replication factor C 55.2 8.1 0.00018 43.1 2.5 16 83-98 36-51 (319)
374 PF00735 Septin: Septin; Inte 55.1 3.8 8.3E-05 45.1 -0.1 21 78-98 1-21 (281)
375 KOG0577 Serine/threonine prote 55.1 4.8E+02 0.01 32.0 26.2 33 526-558 492-532 (948)
376 PF05729 NACHT: NACHT domain 54.9 5.6 0.00012 38.8 1.0 16 83-98 2-17 (166)
377 TIGR01069 mutS2 MutS2 family p 54.8 1.1E+02 0.0024 38.6 12.5 18 840-857 702-719 (771)
378 TIGR01000 bacteriocin_acc bact 54.5 4.2E+02 0.0091 31.2 20.9 28 534-561 171-198 (457)
379 PRK04328 hypothetical protein; 54.2 8.4 0.00018 41.5 2.3 27 71-97 10-39 (249)
380 KOG0735 AAA+-type ATPase [Post 54.2 5.3 0.00012 48.5 0.8 49 79-127 699-761 (952)
381 COG1136 SalX ABC-type antimicr 54.1 5.1 0.00011 42.6 0.6 15 84-98 34-48 (226)
382 PRK04195 replication factor C 54.1 7.8 0.00017 46.0 2.2 30 69-98 26-56 (482)
383 TIGR01242 26Sp45 26S proteasom 54.0 5.3 0.00012 45.5 0.8 51 47-98 118-173 (364)
384 COG2256 MGS1 ATPase related to 54.0 6.9 0.00015 44.7 1.6 44 48-97 21-64 (436)
385 TIGR01618 phage_P_loop phage n 53.8 5.5 0.00012 42.2 0.8 18 81-98 12-29 (220)
386 PRK09376 rho transcription ter 53.5 20 0.00044 41.3 5.3 59 71-150 158-219 (416)
387 PF12774 AAA_6: Hydrolytic ATP 53.5 8.6 0.00019 41.1 2.2 42 83-124 34-83 (231)
388 PF05496 RuvB_N: Holliday junc 53.4 10 0.00022 40.4 2.6 44 49-98 22-67 (233)
389 cd01127 TrwB Bacterial conjuga 53.4 5.7 0.00012 46.1 0.9 18 81-98 42-59 (410)
390 KOG1853 LIS1-interacting prote 53.0 3.2E+02 0.007 29.4 23.8 51 605-655 55-105 (333)
391 PRK10590 ATP-dependent RNA hel 52.8 8.2 0.00018 45.4 2.2 25 72-98 31-55 (456)
392 PF13476 AAA_23: AAA domain; P 52.7 6 0.00013 40.0 0.9 17 82-98 20-36 (202)
393 TIGR02788 VirB11 P-type DNA tr 52.4 9.1 0.0002 42.6 2.3 29 69-98 133-161 (308)
394 cd01120 RecA-like_NTPases RecA 52.4 5.6 0.00012 38.5 0.6 15 84-98 2-16 (165)
395 KOG3859 Septins (P-loop GTPase 52.4 1.7E+02 0.0037 32.2 11.5 56 572-627 342-402 (406)
396 PRK14974 cell division protein 52.4 13 0.00027 42.1 3.4 18 81-98 140-157 (336)
397 TIGR02902 spore_lonB ATP-depen 52.1 8.9 0.00019 46.1 2.3 44 46-98 60-103 (531)
398 PLN02939 transferase, transfer 51.8 3.6E+02 0.0077 35.0 16.0 161 384-569 199-403 (977)
399 cd01123 Rad51_DMC1_radA Rad51_ 51.7 8.5 0.00018 40.6 1.9 29 70-98 5-36 (235)
400 PF02534 T4SS-DNA_transf: Type 51.5 11 0.00023 44.5 2.8 17 82-98 45-61 (469)
401 PF07106 TBPIP: Tat binding pr 51.5 1.7E+02 0.0038 29.4 11.3 56 498-563 82-137 (169)
402 PF13173 AAA_14: AAA domain 51.4 6.6 0.00014 37.4 0.9 16 83-98 4-19 (128)
403 PRK09841 cryptic autophosphory 51.4 2.7E+02 0.0058 35.0 15.2 57 499-555 271-331 (726)
404 TIGR02237 recomb_radB DNA repa 51.3 8.2 0.00018 40.0 1.6 25 74-98 2-29 (209)
405 PRK11519 tyrosine kinase; Prov 51.1 3.7E+02 0.0081 33.7 16.4 55 500-554 272-330 (719)
406 KOG0288 WD40 repeat protein Ti 51.0 4.5E+02 0.0097 30.4 17.2 130 600-747 4-137 (459)
407 KOG0979 Structural maintenance 51.0 6.7E+02 0.014 32.4 26.4 33 792-824 866-898 (1072)
408 KOG2543 Origin recognition com 50.9 7.3 0.00016 44.2 1.2 41 80-143 29-69 (438)
409 PRK10865 protein disaggregatio 50.9 12 0.00026 47.6 3.3 42 50-97 567-614 (857)
410 cd01850 CDC_Septin CDC/Septin. 50.9 7.3 0.00016 42.7 1.2 21 78-98 1-21 (276)
411 COG1125 OpuBA ABC-type proline 50.8 6.5 0.00014 42.4 0.8 12 87-98 33-44 (309)
412 TIGR01843 type_I_hlyD type I s 50.6 4.3E+02 0.0094 30.2 23.6 19 842-860 399-417 (423)
413 PF10211 Ax_dynein_light: Axon 50.6 2.9E+02 0.0063 28.5 12.8 22 610-631 164-185 (189)
414 PF05266 DUF724: Protein of un 50.4 2.8E+02 0.0061 28.8 12.6 77 537-624 98-174 (190)
415 PF04849 HAP1_N: HAP1 N-termin 49.9 4.1E+02 0.0089 29.7 24.5 109 574-703 163-271 (306)
416 PF14662 CCDC155: Coiled-coil 49.8 3.2E+02 0.0069 28.4 22.7 33 530-562 97-129 (193)
417 PRK00771 signal recognition pa 49.5 15 0.00033 43.0 3.6 18 81-98 95-112 (437)
418 PF10236 DAP3: Mitochondrial r 49.5 11 0.00023 42.2 2.3 24 75-98 17-40 (309)
419 TIGR03185 DNA_S_dndD DNA sulfu 49.5 6E+02 0.013 31.5 34.4 20 575-594 395-414 (650)
420 PRK14962 DNA polymerase III su 49.4 11 0.00023 44.8 2.3 43 47-98 10-53 (472)
421 PRK05703 flhF flagellar biosyn 49.4 7.1 0.00015 45.6 0.9 16 83-98 223-238 (424)
422 cd02021 GntK Gluconate kinase 49.4 6.9 0.00015 38.1 0.7 15 84-98 2-16 (150)
423 TIGR02640 gas_vesic_GvpN gas v 49.3 13 0.00027 40.4 2.8 30 67-98 9-38 (262)
424 PRK15424 propionate catabolism 49.2 25 0.00054 42.4 5.4 33 180-212 321-353 (538)
425 TIGR00614 recQ_fam ATP-depende 48.9 11 0.00023 44.6 2.3 25 72-98 19-43 (470)
426 PF00063 Myosin_head: Myosin h 48.7 10 0.00022 47.2 2.1 36 62-98 66-102 (689)
427 COG1222 RPT1 ATP-dependent 26S 48.7 6.6 0.00014 44.2 0.4 119 8-127 93-245 (406)
428 PF07058 Myosin_HC-like: Myosi 48.6 4.1E+02 0.0089 29.5 13.6 41 500-545 120-160 (351)
429 PRK06995 flhF flagellar biosyn 47.9 7.6 0.00017 45.9 0.8 17 82-98 257-273 (484)
430 PF06745 KaiC: KaiC; InterPro 47.8 11 0.00023 39.7 1.9 28 71-98 6-36 (226)
431 TIGR01359 UMP_CMP_kin_fam UMP- 47.8 8 0.00017 39.0 0.9 15 84-98 2-16 (183)
432 PF15290 Syntaphilin: Golgi-lo 47.8 2.6E+02 0.0056 30.7 11.9 27 534-560 74-100 (305)
433 COG5019 CDC3 Septin family pro 47.5 10 0.00022 42.9 1.6 21 78-98 20-40 (373)
434 COG1126 GlnQ ABC-type polar am 47.4 8.3 0.00018 40.7 0.9 15 84-98 31-45 (240)
435 PRK07261 topology modulation p 47.0 8.4 0.00018 39.0 0.9 15 84-98 3-17 (171)
436 PRK00131 aroK shikimate kinase 47.0 8.7 0.00019 38.1 1.0 17 82-98 5-21 (175)
437 PF10212 TTKRSYEDQ: Predicted 46.9 5.8E+02 0.013 30.6 21.2 185 405-622 309-514 (518)
438 KOG1532 GTPase XAB1, interacts 46.9 14 0.0003 40.2 2.5 19 80-98 18-36 (366)
439 PRK11634 ATP-dependent RNA hel 46.9 11 0.00023 46.4 1.9 25 72-98 36-60 (629)
440 COG1660 Predicted P-loop-conta 46.8 21 0.00044 38.7 3.7 37 83-119 3-45 (286)
441 KOG4360 Uncharacterized coiled 46.8 5.7E+02 0.012 30.4 17.3 74 609-686 226-299 (596)
442 PRK00080 ruvB Holliday junctio 46.8 7.3 0.00016 43.7 0.4 17 82-98 52-68 (328)
443 KOG0335 ATP-dependent RNA heli 46.7 8.4 0.00018 45.0 0.9 62 76-143 108-189 (482)
444 TIGR00376 DNA helicase, putati 46.7 11 0.00025 46.2 2.1 16 83-98 175-190 (637)
445 PRK09270 nucleoside triphospha 46.5 16 0.00035 38.6 3.0 36 63-98 14-50 (229)
446 PRK10416 signal recognition pa 46.5 16 0.00035 40.9 3.1 17 82-98 115-131 (318)
447 PRK06067 flagellar accessory p 46.5 13 0.00029 39.3 2.3 30 69-98 10-42 (234)
448 TIGR03158 cas3_cyano CRISPR-as 46.4 12 0.00027 42.5 2.2 26 73-98 6-31 (357)
449 PRK08118 topology modulation p 46.4 8.7 0.00019 38.7 0.9 15 84-98 4-18 (167)
450 CHL00081 chlI Mg-protoporyphyr 46.2 12 0.00027 42.4 2.1 44 46-98 12-55 (350)
451 PF10211 Ax_dynein_light: Axon 46.1 3.6E+02 0.0078 27.9 13.7 26 533-558 64-89 (189)
452 PF08946 Osmo_CC: Osmosensory 46.0 32 0.0007 26.9 3.6 29 529-557 10-41 (46)
453 PRK09361 radB DNA repair and r 45.9 14 0.00031 38.7 2.5 29 70-98 9-40 (225)
454 TIGR02030 BchI-ChlI magnesium 45.9 10 0.00022 42.9 1.3 42 48-98 1-42 (337)
455 PRK14961 DNA polymerase III su 45.7 14 0.00031 42.1 2.6 41 49-98 14-55 (363)
456 KOG1803 DNA helicase [Replicat 45.6 11 0.00023 45.2 1.5 17 82-98 202-218 (649)
457 PF09787 Golgin_A5: Golgin sub 45.5 6.1E+02 0.013 30.4 23.9 25 570-594 179-203 (511)
458 KOG4657 Uncharacterized conser 45.5 3.8E+02 0.0083 28.5 12.4 38 535-572 86-123 (246)
459 cd01393 recA_like RecA is a b 45.4 14 0.00031 38.6 2.4 29 70-98 5-36 (226)
460 PF10473 CENP-F_leu_zip: Leuci 45.3 3.1E+02 0.0068 27.0 17.6 22 536-557 25-46 (140)
461 COG0630 VirB11 Type IV secreto 45.2 8.2 0.00018 43.1 0.5 18 81-98 143-160 (312)
462 PRK10361 DNA recombination pro 45.1 6E+02 0.013 30.2 18.7 164 484-648 42-212 (475)
463 KOG0651 26S proteasome regulat 44.9 24 0.00052 39.2 3.9 113 13-126 80-225 (388)
464 cd00464 SK Shikimate kinase (S 44.9 9.1 0.0002 37.2 0.7 16 83-98 1-16 (154)
465 TIGR01650 PD_CobS cobaltochela 44.9 14 0.00031 41.5 2.3 27 70-98 55-81 (327)
466 KOG0244 Kinesin-like protein [ 44.9 3.4E+02 0.0074 34.5 14.0 88 535-623 467-562 (913)
467 PRK11034 clpA ATP-dependent Cl 44.8 17 0.00037 45.5 3.3 18 81-98 488-505 (758)
468 TIGR02655 circ_KaiC circadian 44.6 27 0.00058 41.6 4.7 28 71-98 8-38 (484)
469 PRK11889 flhF flagellar biosyn 44.5 9.1 0.0002 44.1 0.7 17 82-98 242-258 (436)
470 TIGR01243 CDC48 AAA family ATP 44.5 14 0.00031 46.2 2.6 17 82-98 213-229 (733)
471 PF10412 TrwB_AAD_bind: Type I 44.4 8.5 0.00019 44.3 0.5 16 83-98 17-32 (386)
472 PRK12726 flagellar biosynthesi 44.4 9.6 0.00021 43.7 0.9 17 82-98 207-223 (407)
473 CHL00176 ftsH cell division pr 44.3 9 0.0002 47.0 0.7 17 82-98 217-233 (638)
474 CHL00181 cbbX CbbX; Provisiona 44.3 9.1 0.0002 42.2 0.7 15 84-98 62-76 (287)
475 PF04912 Dynamitin: Dynamitin 44.2 5.5E+02 0.012 29.5 16.4 180 366-591 196-388 (388)
476 PRK13897 type IV secretion sys 44.1 21 0.00045 43.7 3.7 17 82-98 159-175 (606)
477 cd00820 PEPCK_HprK Phosphoenol 44.0 11 0.00023 35.4 1.0 17 82-98 16-32 (107)
478 KOG0344 ATP-dependent RNA heli 44.0 20 0.00044 42.6 3.4 18 81-98 173-190 (593)
479 COG0606 Predicted ATPase with 43.9 9.4 0.0002 44.6 0.7 32 75-114 194-225 (490)
480 PRK04537 ATP-dependent RNA hel 43.9 13 0.00027 45.3 1.9 24 73-98 40-63 (572)
481 TIGR01069 mutS2 MutS2 family p 43.9 4.8E+02 0.01 33.1 15.7 31 607-637 541-571 (771)
482 KOG4603 TBP-1 interacting prot 43.9 3.7E+02 0.0079 27.4 17.8 47 500-546 128-174 (201)
483 KOG0340 ATP-dependent RNA heli 43.8 24 0.00052 39.7 3.7 27 72-100 37-63 (442)
484 PRK14721 flhF flagellar biosyn 43.6 10 0.00022 44.1 0.9 18 81-98 191-208 (420)
485 TIGR02322 phosphon_PhnN phosph 43.5 10 0.00022 38.3 0.8 16 83-98 3-18 (179)
486 TIGR01241 FtsH_fam ATP-depende 43.5 9.3 0.0002 45.5 0.6 51 46-98 50-105 (495)
487 cd01428 ADK Adenylate kinase ( 43.4 10 0.00022 38.5 0.9 15 84-98 2-16 (194)
488 PRK06696 uridine kinase; Valid 43.3 18 0.0004 38.0 2.8 30 69-98 7-39 (223)
489 KOG0239 Kinesin (KAR3 subfamil 43.3 7.5E+02 0.016 30.8 18.4 58 575-632 238-296 (670)
490 KOG0729 26S proteasome regulat 43.3 12 0.00026 40.4 1.3 46 79-124 207-268 (435)
491 TIGR02880 cbbX_cfxQ probable R 43.1 9.7 0.00021 41.9 0.7 16 83-98 60-75 (284)
492 PF10473 CENP-F_leu_zip: Leuci 43.0 3.4E+02 0.0074 26.8 19.3 63 535-605 52-114 (140)
493 TIGR01313 therm_gnt_kin carboh 42.8 8.5 0.00018 38.1 0.2 15 84-98 1-15 (163)
494 COG2841 Uncharacterized protei 42.3 1.6E+02 0.0036 25.4 7.6 48 585-632 7-62 (72)
495 PLN00206 DEAD-box ATP-dependen 42.3 17 0.00038 43.5 2.7 25 72-98 151-175 (518)
496 PRK11546 zraP zinc resistance 42.2 2.1E+02 0.0045 28.4 9.5 68 526-608 52-119 (143)
497 PRK14723 flhF flagellar biosyn 42.1 12 0.00025 46.8 1.1 17 82-98 186-202 (767)
498 KOG4360 Uncharacterized coiled 42.0 6.7E+02 0.015 29.9 20.7 138 573-747 161-299 (596)
499 KOG0739 AAA+-type ATPase [Post 41.9 11 0.00025 41.3 0.9 79 49-128 131-227 (439)
500 TIGR02746 TraC-F-type type-IV 41.9 10 0.00022 48.0 0.6 18 81-98 430-447 (797)
No 1
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-134 Score=1167.93 Aligned_cols=779 Identities=43% Similarity=0.588 Sum_probs=686.4
Q ss_pred eCCCCchhhccCCceEEEEeCCCcceeecc-eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCc
Q 002730 16 VRPLIGDERAQGCKECVAVTHGNPQVQIGT-HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK 94 (887)
Q Consensus 16 vRP~~~~E~~~~~~~~~~~~~~~~~v~~~~-~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGK 94 (887)
|||+..+|..+||+.|+.+.|+.|||.+|+ .+|+||+||++ .+.|..+|+.||.|+++.+|.|||+||+|||||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~-~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGKDASFTYDKVFLD-LESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecCCcceeeeeeccC-chHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 699999999999999999999999999986 79999999986 4569999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCc-ccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccccccCCCCCccccCCCC
Q 002730 95 TYTMGTGLREGFQ-TGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRP 173 (887)
Q Consensus 95 TyTm~g~~~~~~~-~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 173 (887)
|||||+++..... .|+|||++.++|..|..... ..|.|.|||+|||++.|+|||.|.. ...
T Consensus 80 Tytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~-----------------~~~ 141 (913)
T KOG0244|consen 80 TYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR-----------------LKA 141 (913)
T ss_pred eeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh-----------------hhh
Confidence 9999998764444 59999999999999998654 8899999999999999999998644 234
Q ss_pred CceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCC
Q 002730 174 PIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDED 253 (887)
Q Consensus 174 ~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~~~~~~~~~~~ 253 (887)
++.+++ +.|++.+.|+++++|.+..+++.+|..|...|++++|+||.+|||||+||||++++......
T Consensus 142 ~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~----------- 209 (913)
T KOG0244|consen 142 NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSK----------- 209 (913)
T ss_pred ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhc-----------
Confidence 588888 88999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcchhhhhhcCCC
Q 002730 254 MDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGG 333 (887)
Q Consensus 254 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKLTrLLqdsLgG 333 (887)
...+++||||||||||||.++|+++|+|++||++||.||++|||||+||++.++ ++|||||||||||||||+|||
T Consensus 210 --~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk---~~~vpyRdSkltrlLQdslgG 284 (913)
T KOG0244|consen 210 --RSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK---GGEVPYRDSKLTRLLQDSLGG 284 (913)
T ss_pred --cchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc---CCcccchHHHHHHHHHHHhcC
Confidence 346789999999999999999999999999999999999999999999999875 679999999999999999999
Q ss_pred CceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHH
Q 002730 334 NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGR 413 (887)
Q Consensus 334 ns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~~~~~~~~~~l~~~ 413 (887)
|+.|+||+||||++.|+.||+|||+||+||++|+|+|+||.||....|..|+.+|+.|+.+|+...|.....+++.+..+
T Consensus 285 ns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e 364 (913)
T KOG0244|consen 285 NSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFE 364 (913)
T ss_pred CcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999976665567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhcccccccC-Cchhhchhhh-------------------hhhhcccCCcchhhh
Q 002730 414 IAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVKSDGL-------------------KRGFQSIDSSDYQMD 473 (887)
Q Consensus 414 ~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~aq~~-~~~~~Ki~el-------------------k~~L~~~~~~~~~~~ 473 (887)
+..+++.+..+..+..+.++.|.....+...++.. +.....+... ..-++.+++..+.+.
T Consensus 365 ~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~ 444 (913)
T KOG0244|consen 365 NVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLLSEDSNEDASDKSASLPKPLEPVDSGTEEIG 444 (913)
T ss_pred hhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHHHHhHhHHhhhccccCCcccccccccccccc
Confidence 99999999999999999999987776666655433 1111111111 111111111101111
Q ss_pred hhcc-CCCChhHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 474 EAVS-DGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQE 550 (887)
Q Consensus 474 ~~~~-~~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~~~~~~~~--~~~~~lk~~ye~kl~eLe~ei~~lq~E 550 (887)
...+ .+++.........++|+..|..+..|+.+++++|++||++++++.. .....+++||+.+...|+.++..++.|
T Consensus 445 ~~~~~~~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E 524 (913)
T KOG0244|consen 445 MNTDTSGDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESE 524 (913)
T ss_pred ccccCCCchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccc
Confidence 1111 0111122233567889999999999999999999999999999875 456789999999999999999999999
Q ss_pred HHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 551 RDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (887)
Q Consensus 551 rd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~k 630 (887)
++.|+.++..... .+.+|.++|++||+.||.++..|++++.+|..|++.+.+.+....+|..||..||.+||+|++
T Consensus 525 ~~~l~~el~~~~~----~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~ 600 (913)
T KOG0244|consen 525 RSRLRNELNVFNR----LAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLR 600 (913)
T ss_pred cHHHHHHHHhhhH----HHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998753 788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccCC
Q 002730 631 KIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA-RENSVN 709 (887)
Q Consensus 631 kmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~-r~~~~~ 709 (887)
+|++|+++|+.|++..+||++||++++|++++++.+++..+.+|..||+|||+||++++|||++++..|+..+ .+....
T Consensus 601 ~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~~r~~~~s~~~~~~ 680 (913)
T KOG0244|consen 601 VMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALCIRALTSSGQVTLG 680 (913)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998652 222111
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCcccccccC
Q 002730 710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSL 789 (887)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (887)
. ++ ........|+.+|++|++.+.+++.+|++++++|+.++.++..++...
T Consensus 681 ~---~~----~~~~~~~~~~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r~~~---------------------- 731 (913)
T KOG0244|consen 681 D---NG----ASTSRTVAWPSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLRSEG---------------------- 731 (913)
T ss_pred h---cC----chhHHHHHHhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 1 22 344678999999999999999999999999999999999999998631
Q ss_pred ChHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 002730 790 SPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNY 869 (887)
Q Consensus 790 ~~~~r~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~~~~~~~~~~~i~s~~eAk~~l~~l~~~~~~~r~~~~~~~~~~ 869 (887)
.+.|.+|+.+|+..+++|.+|++++..++++++.. .+|++|.|+.||||+++|+|+.++..|++....+..+
T Consensus 732 -----~k~l~~L~~~~~~~~~~i~s~~~~i~~a~~d~~~~---~~w~~v~t~~~ak~~~~~~~~~~~~~r~~~~~~~~~~ 803 (913)
T KOG0244|consen 732 -----KKLLGSLEPVMELTSDQISSMQDLIITASKDERIK---MRWEAVGTLSEAKNFEPYLYDGIVALRIQGDNLFSGS 803 (913)
T ss_pred -----HHHHhhhHHHHHHHHHHHHhHHhhhcccccchhHH---HHHhcccccccchhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 68899999999999999999999999999998753 4999999999999999999999999999999544444
Q ss_pred hh
Q 002730 870 RT 871 (887)
Q Consensus 870 ~~ 871 (887)
|+
T Consensus 804 re 805 (913)
T KOG0244|consen 804 RE 805 (913)
T ss_pred hh
Confidence 43
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-91 Score=825.07 Aligned_cols=399 Identities=40% Similarity=0.626 Sum_probs=334.8
Q ss_pred CCCceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec--------ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHh
Q 002730 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (887)
Q Consensus 6 ~~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~--------~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l 77 (887)
.+.+|+|+|||||++.+|....++..|++.+....|.+. .+.|+||.||||. ++|.+||+.+|.|+|..|+
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpe-s~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPE-SQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcc-hhHHHHHHHHHHHHHHHHh
Confidence 346999999999999999988888888877654434331 3689999999986 4699999999999999999
Q ss_pred cCCCeEEEeeccCCCCcccccCCCCC-----CCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCc
Q 002730 78 QGYNATVLAYGQTGSGKTYTMGTGLR-----EGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm~g~~~-----~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (887)
.|||||||||||||+||||||.|+.. .+...|||||++.+||+.++.. +.+|+|+|||+|+|||+|+|||+|.
T Consensus 126 ~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~--~~EYsvKVSfLELYNEEl~DLLa~~ 203 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQ--GAEYSVKVSFLELYNEELTDLLASE 203 (1041)
T ss_pred ccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhc--CCeEEEEEEehhhhhHHHHHhcCCc
Confidence 99999999999999999999998643 4678999999999999999884 4799999999999999999999987
Q ss_pred ccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002730 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (887)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti 232 (887)
.... .+....+.+++. +..||++|.|+.+++|+++.|++.+|.+|...|.|++|.||.+|||||+||+|
T Consensus 204 ~~~~--------~~~~~k~~~~~~---~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 204 DTSD--------KKLRIKDDSTIV---DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred cccc--------cccccccCCccc---CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 6321 111222233333 67899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 002730 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (887)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~ 312 (887)
+|.-.... ..+++-+.+|||+||||||||...++|+.+.|.+|++.||+||++||+||+||.+..
T Consensus 273 tvhike~t-----------~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s---- 337 (1041)
T KOG0243|consen 273 TVHIKENT-----------PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHS---- 337 (1041)
T ss_pred EEEEecCC-----------CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccC----
Confidence 99865321 113466889999999999999999999999999999999999999999999999975
Q ss_pred CCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccc-hHHHHHHHHHHHHH
Q 002730 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLI-SSDMQKLRQQLKYL 391 (887)
Q Consensus 313 ~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~-~~~i~~l~~~i~~L 391 (887)
+|||||+|||||||||||||.++|+|||||||+..+++||++||.||.||++|+|+|.+|+-.. ...+..|-.+|+.|
T Consensus 338 -~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerL 416 (1041)
T KOG0243|consen 338 -GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERL 416 (1041)
T ss_pred -CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999998654 45678999999999
Q ss_pred HHHHh-hhhC-C--CChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 392 QAELC-ARAG-G--APSD-------EVQVLKGRIAWLEATNEDLCQELHEYRSR 434 (887)
Q Consensus 392 ~~el~-~~~~-~--~~~~-------~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 434 (887)
+..|. ++.. | .+.+ +.+.....|..++.+...+..++....+.
T Consensus 417 K~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~ 470 (1041)
T KOG0243|consen 417 KRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTEL 470 (1041)
T ss_pred HHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 3322 2 2222 23334444455555555555554444443
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-94 Score=834.08 Aligned_cols=393 Identities=39% Similarity=0.602 Sum_probs=343.0
Q ss_pred CCceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec-----ceeEEcceeeCCCC------CcchhhhhhhhhhHHHH
Q 002730 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-----THSFTFDHVYGNGG------SPSSAMFGECVAPLVDG 75 (887)
Q Consensus 7 ~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~-----~~~F~FD~Vf~~~~------s~q~~vy~~~v~plv~~ 75 (887)
..+|+|+|||||++.+|....|...|.+.....+|... ...|+||++||+-+ .+|..||+.+..|++++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 46899999999999999998777666666655555433 25799999998643 35789999999999999
Q ss_pred HhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhc-ccceEEEEEeeeeeehhhHhhccCCccc
Q 002730 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (887)
Q Consensus 76 ~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DLL~~~~~ 154 (887)
+|+|||+||||||||||||||||.| +.++.++|||||++++||.+|.... .+..|.|.|||+|||||.|+|||+...
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG-~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~- 160 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMG-FQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK- 160 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeec-cCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC-
Confidence 9999999999999999999999988 4466889999999999999998753 357899999999999999999998311
Q ss_pred ccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002730 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (887)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v 234 (887)
.+++|++||+|--|+||.+|+.+.|+|+.|+..+|..|++.|++++|+||+.|||||+||||.+
T Consensus 161 ----------------~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvf 224 (1221)
T KOG0245|consen 161 ----------------SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVF 224 (1221)
T ss_pred ----------------CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEE
Confidence 2568999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhcc--CCC
Q 002730 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK--RRE 312 (887)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~--~~~ 312 (887)
.|..... +.......+|||+|||||||||+..||+.|+|+|||.+||+||++||.||+||++..+ .++
T Consensus 225 tQk~~~~----------~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~k 294 (1221)
T KOG0245|consen 225 TQKKHDQ----------DTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKK 294 (1221)
T ss_pred Eeeeccc----------cCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCC
Confidence 9976432 1113467899999999999999999999999999999999999999999999998653 334
Q ss_pred CCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHH
Q 002730 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQ 392 (887)
Q Consensus 313 ~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~ 392 (887)
..+||||||-|||||+++|||||+|+|||++||+|.||+|||+|||||+|||+|+|+|+||.||....|+.|+.+|..|+
T Consensus 295 s~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLk 374 (1221)
T KOG0245|consen 295 SDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLK 374 (1221)
T ss_pred CccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCC-C----------hHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 393 AELCARAGGA-P----------SDEVQVLKGRIAWLEATNEDLCQE 427 (887)
Q Consensus 393 ~el~~~~~~~-~----------~~~~~~l~~~~~~l~~~~~~l~~~ 427 (887)
..|...+.+. + ..++..+.+++++-+....+|...
T Consensus 375 sll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~et 420 (1221)
T KOG0245|consen 375 SLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNET 420 (1221)
T ss_pred HHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9987543322 1 345666666666655555555443
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-94 Score=820.58 Aligned_cols=356 Identities=46% Similarity=0.691 Sum_probs=329.9
Q ss_pred CCCceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec---------ceeEEcceeeCCCCCcchhhhhhhhhhHHHHH
Q 002730 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (887)
Q Consensus 6 ~~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~ 76 (887)
.+.+|+|+||+||+.+.+...++..++.+.+...++.+. +++||||+||+++ ++|++||..++.|+|++|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~-stQ~dvy~~~~~~lV~sv 81 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSD-STQDDVYQETVAPLVESV 81 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCC-CCHHHHHHHHhHHHHHHH
Confidence 357899999999999999999999998888777666552 4689999999875 459999999999999999
Q ss_pred hcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCccccc
Q 002730 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (887)
Q Consensus 77 l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (887)
++|||+||||||||||||||||.|+ ++...|||||++.+||..|+.......|.|+|||+|||||.|+|||+|.+
T Consensus 82 l~GyNgtvFaYGQTGsGKTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~--- 156 (574)
T KOG4280|consen 82 LEGYNGTVFAYGQTGSGKTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN--- 156 (574)
T ss_pred hcccCceEEEeccCCCCCceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC---
Confidence 9999999999999999999999997 47889999999999999999987667899999999999999999998854
Q ss_pred ccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEe
Q 002730 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (887)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q 236 (887)
.+.+.|++++..||||.|++++.|.++++++.+|..|..+|.+++|.||..|||||+||||+|++
T Consensus 157 ---------------~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~ 221 (574)
T KOG4280|consen 157 ---------------PKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIES 221 (574)
T ss_pred ---------------cCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEe
Confidence 25799999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCc
Q 002730 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (887)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~i 316 (887)
.... .+.......|+|||||||||||..+||+.|+|++|+.+||+||++||+||++|+++++ +||
T Consensus 222 ~~~~-----------~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~----~HI 286 (574)
T KOG4280|consen 222 SEKS-----------DGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK----THI 286 (574)
T ss_pred eccc-----------CCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc----CCC
Confidence 3321 1223567889999999999999999999999999999999999999999999999875 399
Q ss_pred cCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHh
Q 002730 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELC 396 (887)
Q Consensus 317 PyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~~el~ 396 (887)
||||||||+||||||||||+|+|||||||++++++||++||+||+||+.|+|+|+||.||..+.+..|+.+|+.|+.+|.
T Consensus 287 PYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~ 366 (574)
T KOG4280|consen 287 PYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELD 366 (574)
T ss_pred CcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred h
Q 002730 397 A 397 (887)
Q Consensus 397 ~ 397 (887)
.
T Consensus 367 ~ 367 (574)
T KOG4280|consen 367 P 367 (574)
T ss_pred c
Confidence 3
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.6e-87 Score=739.38 Aligned_cols=337 Identities=42% Similarity=0.686 Sum_probs=313.0
Q ss_pred CCCCceEEEEEeCCCCchhhccCCceEEEEeCCCcceeecc----eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCC
Q 002730 5 SENCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGT----HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (887)
Q Consensus 5 ~~~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~~----~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~ 80 (887)
++.|+|+|+||+||++..|...|......+.++...|.+++ .+|.||+||+|.+ +|.+||..++.|+|++||.||
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pna-tQe~Vy~~~a~~Iv~dVL~GY 82 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNA-TQEDVYEFAAKPIVDDVLLGY 82 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCc-cHHHHHHHHHHHHHHHHhccc
Confidence 36799999999999999998888776666666666777766 8999999999865 599999999999999999999
Q ss_pred CeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCccccccccc
Q 002730 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (887)
|+||||||||||||||||.|...+....|||||++++||.+|.++....+|.|.|||||||.|+|+|||+|.
T Consensus 83 NGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~-------- 154 (607)
T KOG0240|consen 83 NGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE-------- 154 (607)
T ss_pred ceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--------
Confidence 999999999999999999997766677899999999999999999888999999999999999999999874
Q ss_pred CCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002730 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (887)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~ 240 (887)
+.++.|+||.+.+++|.|++++.|.++++++.++..|..+|+++.|+||.+|||||+||+|+|.|....
T Consensus 155 -----------k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e 223 (607)
T KOG0240|consen 155 -----------KTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE 223 (607)
T ss_pred -----------cCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc
Confidence 357999999999999999999999999999999999999999999999999999999999999996532
Q ss_pred ccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCC
Q 002730 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (887)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRd 320 (887)
+...++|+|.||||||||++.++|+.|.-+.|+.+||+||.|||+||++|+++. .+||||||
T Consensus 224 --------------~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~----~shipYRD 285 (607)
T KOG0240|consen 224 --------------DKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGP----KSHIPYRD 285 (607)
T ss_pred --------------chhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCC----CCCCcchh
Confidence 256789999999999999999999999999999999999999999999999985 36999999
Q ss_pred CcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchH
Q 002730 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISS 379 (887)
Q Consensus 321 SKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~ 379 (887)
|||||||||||||||+|.+|+|+||+..|..||.+||+|++||+.|+|.+.+|......
T Consensus 286 SKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e 344 (607)
T KOG0240|consen 286 SKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAE 344 (607)
T ss_pred hHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHH
Confidence 99999999999999999999999999999999999999999999999999999865443
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=9e-86 Score=782.17 Aligned_cols=355 Identities=41% Similarity=0.609 Sum_probs=307.7
Q ss_pred CCceEEEEEeCCCCchhhccCCceEEEEeCCCcceeecceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEe
Q 002730 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (887)
Q Consensus 7 ~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~a 86 (887)
+++|+|+|||||+...| .+...++ .. .+..+.+..+.|+||+||++.+ +|++||+.++.|+|+++|+|||+||||
T Consensus 97 ds~VkV~VRVRPl~~~E--~g~~iV~-~~-s~dsl~I~~qtFtFD~VFdp~a-TQedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGE--EGEMIVQ-KM-SNDSLTINGQTFTFDSIADPES-TQEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred CCCeEEEEEcCCCCCcc--CCCeeEE-Ec-CCCeEEEeCcEEeCCeeeCCCC-CHHHHHHHHHHHHHHHHhcCCcceeec
Confidence 57999999999999886 3433333 22 3445777889999999999865 599999999999999999999999999
Q ss_pred eccCCCCcccccCCCCC-------CCCcccchHHHHHHHHHHHHhh-----cccceEEEEEeeeeeehhhHhhccCCccc
Q 002730 87 YGQTGSGKTYTMGTGLR-------EGFQTGLIPQVMNALFNKIETL-----RHQMEFQLHVSFIEILKEEVRDLLDSVSV 154 (887)
Q Consensus 87 YGqTGSGKTyTm~g~~~-------~~~~~GiIpr~~~~LF~~i~~~-----~~~~~~~v~vS~~EIynE~v~DLL~~~~~ 154 (887)
||||||||||||+|+.+ .+..+|||||++++||..|... .....|.|+|||+|||||.|||||++..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~- 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ- 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc-
Confidence 99999999999999653 2467899999999999999753 2346799999999999999999998632
Q ss_pred ccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEE
Q 002730 155 SKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITL 234 (887)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v 234 (887)
..+.|++++.+|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|
T Consensus 251 ------------------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~V 312 (1320)
T PLN03188 251 ------------------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVV 312 (1320)
T ss_pred ------------------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002730 235 EQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (887)
Q Consensus 235 ~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~ 314 (887)
++..... .+.......|+|+|||||||||.+++++.|.+++||++||+||++||+||.+|+.....+...
T Consensus 313 es~~k~~----------~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~ 382 (1320)
T PLN03188 313 ESRCKSV----------ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQR 382 (1320)
T ss_pred EEeeccc----------CCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCC
Confidence 8754221 111234678999999999999999999999999999999999999999999999765444567
Q ss_pred CccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHH
Q 002730 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAE 394 (887)
Q Consensus 315 ~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~~e 394 (887)
||||||||||+||||+|||||+|+|||||||+..++.||++||+||+||++|+|+|++|.... ..+..|+..|..|+.|
T Consensus 383 HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~-~~vn~LrelIr~Lk~E 461 (1320)
T PLN03188 383 HIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQ-DDVNFLREVIRQLRDE 461 (1320)
T ss_pred cCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchh-hhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998653 2344555555555555
Q ss_pred Hh
Q 002730 395 LC 396 (887)
Q Consensus 395 l~ 396 (887)
|.
T Consensus 462 L~ 463 (1320)
T PLN03188 462 LQ 463 (1320)
T ss_pred HH
Confidence 54
No 7
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.4e-83 Score=754.83 Aligned_cols=348 Identities=45% Similarity=0.690 Sum_probs=306.0
Q ss_pred CCceEEEEEeCCCCchhhccCCceEEEEeCCCcceee----c------ceeEEcceeeCCCCCcchhhhhhhhhhHHHHH
Q 002730 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI----G------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGL 76 (887)
Q Consensus 7 ~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~----~------~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~ 76 (887)
...|.|+|||||+++++...+. .|.....++..+.. . ...|.||+||+++.+ |.+||+.+++|+|++|
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t-~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGD-RSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEEST-QEDVYERTTKPLLLSV 82 (675)
T ss_pred cceeEEEEEeCCCCccccccCC-ccceEecCCceeEeeccccccccccccceeeeeecCCCCC-HHHHHHhccHHHHHHH
Confidence 4689999999999998543332 22222222222111 1 378999999998765 8999999999999999
Q ss_pred hcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCccccc
Q 002730 77 FQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSK 156 (887)
Q Consensus 77 l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~ 156 (887)
+.||||||||||||||||||||.|. ..+|||||.++.+||+.|.... ...|.|.|||+|||||.|+|||+|..
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~---~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~--- 155 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGS---EDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG--- 155 (675)
T ss_pred hcCcccceeeecCCCCCCceEEecc---CCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC---
Confidence 9999999999999999999999884 5569999999999999999866 78999999999999999999998743
Q ss_pred ccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEe
Q 002730 157 SVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQ 236 (887)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q 236 (887)
+++.|+||+.+|++|+||++.+|.|+++++.+|..|..+|+++.|+||..|||||+||+|+|.+
T Consensus 156 ----------------~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s 219 (675)
T KOG0242|consen 156 ----------------GDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVES 219 (675)
T ss_pred ----------------CCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCc
Q 002730 237 MRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHV 316 (887)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~i 316 (887)
..... + . ..|+|+|||||||||+.+|++.|.|++||.+||+||++||+||++|+++.. ..||
T Consensus 220 ~~~~~-------------~-~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~---~~hi 281 (675)
T KOG0242|consen 220 RGREA-------------S-S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR---PRHI 281 (675)
T ss_pred ccccc-------------c-c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc---cCCC
Confidence 65321 0 1 678999999999999999999999999999999999999999999999854 3499
Q ss_pred cCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHH-HHHHHHHHHHHHHHH
Q 002730 317 PYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSD-MQKLRQQLKYLQAEL 395 (887)
Q Consensus 317 PyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~-i~~l~~~i~~L~~el 395 (887)
||||||||||||+||||||+|+|||||+|+..+++||.|||+||+||++|++++.+|.-..... +..++.++..|+.++
T Consensus 282 pYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~ 361 (675)
T KOG0242|consen 282 PYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAEL 361 (675)
T ss_pred CccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997665543 444568888898888
Q ss_pred hh
Q 002730 396 CA 397 (887)
Q Consensus 396 ~~ 397 (887)
..
T Consensus 362 ~~ 363 (675)
T KOG0242|consen 362 ER 363 (675)
T ss_pred Hh
Confidence 73
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-82 Score=716.59 Aligned_cols=361 Identities=42% Similarity=0.635 Sum_probs=322.0
Q ss_pred CCceEEEEEeCCCCchhhccCCceEEEEeCCCcceee-----------cceeEEcceeeCCCC------Ccchhhhhhhh
Q 002730 7 NCSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------GTHSFTFDHVYGNGG------SPSSAMFGECV 69 (887)
Q Consensus 7 ~~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~-----------~~~~F~FD~Vf~~~~------s~q~~vy~~~v 69 (887)
+..|+|+|||||++.+|......+.+.+..+...+.+ ++++|.||++|++.+ +.|+.||+...
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 4689999999999999987666555656544433322 358999999998654 35899999999
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhc-ccceEEEEEeeeeeehhhHhhc
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR-HQMEFQLHVSFIEILKEEVRDL 148 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~-~~~~~~v~vS~~EIynE~v~DL 148 (887)
..+|+++|+|||+||||||||||||||||.|. ..++|||||++..||..|.... +...|.|.|||+|||||.++||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt---~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DL 159 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT---AEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDL 159 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc---CCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhh
Confidence 99999999999999999999999999999884 5569999999999999998753 3568999999999999999999
Q ss_pred cCCcccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEE
Q 002730 149 LDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHA 228 (887)
Q Consensus 149 L~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHa 228 (887)
|+|.. .+..+.+++++--|+||.||++..|+|++|+-.+|..|+++|+++.|+||..|||||+
T Consensus 160 LdPk~-----------------ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHa 222 (1714)
T KOG0241|consen 160 LDPKG-----------------SSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHA 222 (1714)
T ss_pred hCCCC-----------------CcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccce
Confidence 99865 2357999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhc
Q 002730 229 IFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (887)
Q Consensus 229 Ifti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~ 308 (887)
+|.|.|.|.-.. +.++. .-...|+|.|||||||||+.+||+.|.|++||.+||+||++||.||++|++.+
T Consensus 223 VFslvvtQ~l~D----~ktg~------SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 223 VFSLVVTQTLYD----LKTGH------SGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred eEEEEEeeEEec----cccCc------chhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 999999986432 22222 23457999999999999999999999999999999999999999999999865
Q ss_pred cCC-CCCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHH
Q 002730 309 KRR-EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQ 387 (887)
Q Consensus 309 ~~~-~~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~ 387 (887)
..+ +..+||||||-||+||+|+|||||+|+||+||||+++||+|||+|||||.|||+|+|..+||.||....|+.||.+
T Consensus 293 n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReE 372 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREE 372 (1714)
T ss_pred cCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHH
Confidence 432 4569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 002730 388 LKYLQAELCA 397 (887)
Q Consensus 388 i~~L~~el~~ 397 (887)
++.|+..|..
T Consensus 373 ve~lr~qL~~ 382 (1714)
T KOG0241|consen 373 VEKLREQLEQ 382 (1714)
T ss_pred HHHHHHHHhh
Confidence 9999999974
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1e-81 Score=701.15 Aligned_cols=325 Identities=42% Similarity=0.603 Sum_probs=290.1
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec--ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEe
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG--THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~--~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~a 86 (887)
+|+|+|||||+...|...+...|+.+.+....+..+ .+.|.||+||++++ +|++||+.++.|+|+++|+|||+||||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~p~v~~~~~G~n~ti~a 80 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNT-NQEDVFQSVGKPLVEDCLSGYNGSIFA 80 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCC-CHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 699999999999999877778888766554444333 37999999999865 599999999999999999999999999
Q ss_pred eccCCCCcccccCCCCCC-----CCcccchHHHHHHHHHHHHhhc----ccceEEEEEeeeeeehhhHhhccCCcccccc
Q 002730 87 YGQTGSGKTYTMGTGLRE-----GFQTGLIPQVMNALFNKIETLR----HQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (887)
Q Consensus 87 YGqTGSGKTyTm~g~~~~-----~~~~GiIpr~~~~LF~~i~~~~----~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (887)
||||||||||||+|+... ...+|||||++++||..+.... ....|.|.|||+|||||+|+|||++..
T Consensus 81 YGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~---- 156 (337)
T cd01373 81 YGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS---- 156 (337)
T ss_pred eCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC----
Confidence 999999999999997643 2478999999999999987542 356899999999999999999997632
Q ss_pred cccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002730 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (887)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~ 237 (887)
..+.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.
T Consensus 157 ---------------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 221 (337)
T cd01373 157 ---------------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESW 221 (337)
T ss_pred ---------------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999999875
Q ss_pred eccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCcc
Q 002730 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (887)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iP 317 (887)
.... .......|+|+|||||||||.+++++.|.+++|+.+||+||++||+||.+|++.... ...|||
T Consensus 222 ~~~~------------~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~-~~~~ip 288 (337)
T cd01373 222 EKKA------------SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG-KQRHVP 288 (337)
T ss_pred ecCC------------CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC-CCCccC
Confidence 4321 112567899999999999999999999999999999999999999999999875432 257999
Q ss_pred CCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccc
Q 002730 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (887)
Q Consensus 318 yRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~I 366 (887)
|||||||+||+|+|||||+|+|||||||+..+++||++||+||.||+.|
T Consensus 289 yR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999987
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.3e-81 Score=697.31 Aligned_cols=322 Identities=47% Similarity=0.693 Sum_probs=293.0
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCccee----------------ecceeEEcceeeCCCCCcchhhhhhhhhhH
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQ----------------IGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~----------------~~~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (887)
+|+|+|||||+.++|...+...|+.+.++...+. ...+.|+||+||++++ +|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETS-TQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCC-CHHHHHHHHHHHH
Confidence 5899999999999999889999998765532111 1247899999999865 5999999999999
Q ss_pred HHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSV 152 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~ 152 (887)
|+++++|||+||||||||||||||||+|+. ..+|||||++++||+.++.......|.|.|||+|||||.|+|||++.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~ 156 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTD---SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS 156 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCC---CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC
Confidence 999999999999999999999999999864 56899999999999999987778899999999999999999999763
Q ss_pred ccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEE
Q 002730 153 SVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTI 232 (887)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti 232 (887)
..++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|
T Consensus 157 -------------------~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i 217 (338)
T cd01370 157 -------------------SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQI 217 (338)
T ss_pred -------------------CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCC
Q 002730 233 TLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRRE 312 (887)
Q Consensus 233 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~ 312 (887)
+|.+..... +.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ .
T Consensus 218 ~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~--~ 284 (338)
T cd01370 218 TVRQKDRTA-----------SINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK--K 284 (338)
T ss_pred EEEEEecCC-----------CCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC--C
Confidence 999865321 123567899999999999999999999999999999999999999999999998753 2
Q ss_pred CCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccc
Q 002730 313 GVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (887)
Q Consensus 313 ~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~I 366 (887)
..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 285 ~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 285 NKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred CCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 469999999999999999999999999999999999999999999999999987
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=6.4e-79 Score=680.28 Aligned_cols=326 Identities=36% Similarity=0.590 Sum_probs=287.8
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceee-----------------cceeEEcceeeCCCCCcchhhhhhhhhh
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-----------------GTHSFTFDHVYGNGGSPSSAMFGECVAP 71 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~-----------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~p 71 (887)
+|+|+|||||+.+.|...+...|+.+.++. .+.+ ..+.|.||+||++++ +|++||+.++.|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~-tq~~vy~~~~~p 79 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINST-TIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNT-TQKEFFEGTALP 79 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCC-EEEEeCCccccccccccccCCCceEeecCeEECCCC-CHHHHHHHHHHH
Confidence 799999999999999877778888765443 2221 246899999999865 599999999999
Q ss_pred HHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCC
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~ 151 (887)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.. |.|.|||+|||||.|+|||++
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCC
Confidence 9999999999999999999999999999964 5799999999999999876 999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEE
Q 002730 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (887)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIft 231 (887)
.... .....++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 151 ~~~~-------------~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSS-------------TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccc-------------ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 5421 012357999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCC
Q 002730 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRR 311 (887)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~ 311 (887)
|+|.+...... +. ..........|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+......
T Consensus 218 i~v~~~~~~~~-----~~-~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~ 291 (345)
T cd01368 218 IKLVQAPGDSD-----GD-VDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSG 291 (345)
T ss_pred EEEEEeccCcc-----cc-cccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccc
Confidence 99997643211 00 1112356788999999999999999999999999999999999999999999999865433
Q ss_pred -CCCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhc
Q 002730 312 -EGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (887)
Q Consensus 312 -~~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar 364 (887)
...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 292 ~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 292 STNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999999999999999999999999986
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.1e-78 Score=682.32 Aligned_cols=337 Identities=45% Similarity=0.669 Sum_probs=300.3
Q ss_pred CceEEEEEeCCCCchhhccCCceEEEEeCCCcceee---------cceeEEcceeeCCCC------CcchhhhhhhhhhH
Q 002730 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------GTHSFTFDHVYGNGG------SPSSAMFGECVAPL 72 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~---------~~~~F~FD~Vf~~~~------s~q~~vy~~~v~pl 72 (887)
.+|+|+|||||+...|...+...|+.+.+....+.. ..+.|+||+||++.. ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 379999999999999988888888877764333322 236899999998750 45899999999999
Q ss_pred HHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcc-cceEEEEEeeeeeehhhHhhccCC
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDS 151 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~ 151 (887)
|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+..... ...|.|.|||+|||||.|+|||++
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~---~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKE---EKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCC---CCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 9999999999999999999999999999644 689999999999999987654 578999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEE
Q 002730 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFT 231 (887)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIft 231 (887)
.. ....++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+
T Consensus 158 ~~----------------~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~ 221 (356)
T cd01365 158 KK----------------KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFT 221 (356)
T ss_pred Cc----------------cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEE
Confidence 43 12357899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccC-
Q 002730 232 ITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKR- 310 (887)
Q Consensus 232 i~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~- 310 (887)
|+|.+...... ........|+|+|||||||||..+++..|.+++|+.+||+||++||+||.+|+.....
T Consensus 222 l~v~~~~~~~~----------~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~ 291 (356)
T cd01365 222 IVLTQKKLDKE----------TDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAK 291 (356)
T ss_pred EEEEEEecccC----------CCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 99998653211 1135678999999999999999999999999999999999999999999999986532
Q ss_pred --CCCCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 002730 311 --REGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (887)
Q Consensus 311 --~~~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn 373 (887)
+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|.|++|
T Consensus 292 ~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 292 SKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred ccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 245799999999999999999999999999999999999999999999999999999999987
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.6e-78 Score=680.65 Aligned_cols=333 Identities=44% Similarity=0.693 Sum_probs=302.6
Q ss_pred CceEEEEEeCCCCchhhccCCceEEEEeCCCcceee--------cceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcC
Q 002730 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~--------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G 79 (887)
++|+|+|||||+.+.|...++..++.+.....+|.+ ..+.|+||+||++++ +|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEA-DQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999988888888888777666655 357899999999865 59999999999999999999
Q ss_pred CCeEEEeeccCCCCcccccCCCCCC--------CCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCC
Q 002730 80 YNATVLAYGQTGSGKTYTMGTGLRE--------GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDS 151 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm~g~~~~--------~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~ 151 (887)
||+||||||||||||||||+|+... ....|||||++.+||+.+... ...|.|.|||+|||||.|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 9999999999999999999997654 456899999999999999875 678999999999999999999987
Q ss_pred cccccccccCCCCCccccCCCCCceeEec--CCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002730 152 VSVSKSVTANGHAGKVSISGRPPIQIRES--SNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (887)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~--~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaI 229 (887)
.. ....++.++++ +.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+|
T Consensus 159 ~~----------------~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i 222 (352)
T cd01364 159 ES----------------DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSI 222 (352)
T ss_pred cc----------------ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceE
Confidence 43 12457999999 5899999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhcc
Q 002730 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKK 309 (887)
Q Consensus 230 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~ 309 (887)
|+|+|.+..... ........|+|+|||||||||.+++++.|.+++|+..||+||++|++||.+|+...
T Consensus 223 ~~i~i~~~~~~~-----------~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~- 290 (352)
T cd01364 223 FSITIHIKETTI-----------SGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS- 290 (352)
T ss_pred EEEEEEEeccCC-----------CCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-
Confidence 999999854321 11234568999999999999999999999999999999999999999999998764
Q ss_pred CCCCCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 002730 310 RREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (887)
Q Consensus 310 ~~~~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d 375 (887)
.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+||++|+|+|++|.|
T Consensus 291 ----~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 291 ----PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred ----CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 49999999999999999999999999999999999999999999999999999999999975
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.8e-78 Score=676.31 Aligned_cols=337 Identities=63% Similarity=0.964 Sum_probs=306.4
Q ss_pred CceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec-ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEe
Q 002730 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG-THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLA 86 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~-~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~a 86 (887)
++|+|+||+||+..+|...++..|+.+.++.+++.++ .+.|+||+||++++ +|++||+.++.|+|+.+++|||+||||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~~G~n~~i~a 79 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPST-SQEEVYNTCVAPLVDGLFEGYNATVLA 79 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCC-CHHHHHHHHHHHHHHHHhCCCccceee
Confidence 5899999999999999999999999999999999888 68999999999865 599999999999999999999999999
Q ss_pred eccCCCCcccccCCCCCC---CCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccccccCCC
Q 002730 87 YGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (887)
Q Consensus 87 YGqTGSGKTyTm~g~~~~---~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (887)
||||||||||||+|+... ...+|||||++++||+.++......+|.|.|||+|||||.|+|||++..
T Consensus 80 yG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---------- 149 (341)
T cd01372 80 YGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---------- 149 (341)
T ss_pred ecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc----------
Confidence 999999999999997642 5789999999999999999877668999999999999999999998743
Q ss_pred CCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002730 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (887)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~ 243 (887)
...+++.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.......
T Consensus 150 ------~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~ 223 (341)
T cd01372 150 ------SEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPI 223 (341)
T ss_pred ------cCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCcc
Confidence 12457999999999999999999999999999999999999999999999999999999999999987643210
Q ss_pred CCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcc
Q 002730 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (887)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKL 323 (887)
.....+.......|+|+|||||||||.+++++.|.+++|+.+||+||++|++||.+|+...+ +..|||||+|||
T Consensus 224 ----~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~--~~~~ipyR~S~L 297 (341)
T cd01372 224 ----APMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESK--KGSHVPYRDSKL 297 (341)
T ss_pred ----ccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCC--CCCCCCCcccHH
Confidence 00112234567899999999999999999999999999999999999999999999997653 356999999999
Q ss_pred hhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccc
Q 002730 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQ 367 (887)
Q Consensus 324 TrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ik 367 (887)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||+||
T Consensus 298 T~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 298 TRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999996
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.1e-76 Score=660.36 Aligned_cols=323 Identities=48% Similarity=0.711 Sum_probs=294.5
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec---------ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcC
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G 79 (887)
+|+|+|||||+.+.|...++..++.+.++..+|.+. .+.|+||+||++++ +|++||+.++.|+|+++++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 2 NVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNS-TQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCc-cHHHHHHHHHHHHHHHHhCC
Confidence 799999999999999888888888887776665542 36899999999865 58999999999999999999
Q ss_pred CCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccccc
Q 002730 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVT 159 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~ 159 (887)
||+||||||||||||||||+|+......+|||||++++||..+.... ...|.|.|||+|||||.|+|||++..
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~------ 153 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE-NVQFLVRVSYLEIYNEEVRDLLGKDQ------ 153 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc-CccEEEEEEEEEeeCCeeeeCCCCCC------
Confidence 99999999999999999999987767789999999999999998754 37899999999999999999997632
Q ss_pred cCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeec
Q 002730 160 ANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRK 239 (887)
Q Consensus 160 ~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~ 239 (887)
..++.+++++.++++|.|++++.|.|++++..+|..|..+|.+++|.+|..|||||+||+|+|++...
T Consensus 154 ------------~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~ 221 (333)
T cd01371 154 ------------KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEK 221 (333)
T ss_pred ------------CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEec
Confidence 24689999999999999999999999999999999999999999999999999999999999997653
Q ss_pred cccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCC
Q 002730 240 LHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYR 319 (887)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyR 319 (887)
.. +.......|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+|+.++ ..|||||
T Consensus 222 ~~-----------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~----~~~ipyR 286 (333)
T cd01371 222 GE-----------DGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK----STHIPYR 286 (333)
T ss_pred cC-----------CCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCC----CCcCCCc
Confidence 21 11245778999999999999999999999999999999999999999999998754 3599999
Q ss_pred CCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccc
Q 002730 320 DSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (887)
Q Consensus 320 dSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~I 366 (887)
+||||+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 287 ~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 287 DSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999987
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.7e-76 Score=657.59 Aligned_cols=320 Identities=44% Similarity=0.709 Sum_probs=295.2
Q ss_pred CceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec----ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeE
Q 002730 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNAT 83 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~----~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~t 83 (887)
.+|+|+|||||+...|...+...|+.+.++ ..|.+. .+.|.||+||++++ +|++||+.++.|+|+.+++|||+|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~~~G~n~~ 79 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNT-TQEDVYNFVAKPIVDDVLNGYNGT 79 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHHHcCccce
Confidence 489999999999999987888888887655 456555 58999999999865 599999999999999999999999
Q ss_pred EEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccccccCCC
Q 002730 84 VLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (887)
Q Consensus 84 v~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (887)
|||||+|||||||||+|+......+|||||++++||+.+.......+|.|.+||+|||||.|+|||++.
T Consensus 80 i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~----------- 148 (325)
T cd01369 80 IFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS----------- 148 (325)
T ss_pred EEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCc-----------
Confidence 999999999999999998776678999999999999999987777889999999999999999999864
Q ss_pred CCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccC
Q 002730 164 AGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSV 243 (887)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~ 243 (887)
...+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....
T Consensus 149 --------~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~--- 217 (325)
T cd01369 149 --------KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVE--- 217 (325)
T ss_pred --------cCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecC---
Confidence 246899999999999999999999999999999999999999999999999999999999999885422
Q ss_pred CCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcc
Q 002730 244 SPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKL 323 (887)
Q Consensus 244 ~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKL 323 (887)
......|+|+|||||||||..++++.|.+++|+..||+||++|++||.+|+.+++ .|||||||||
T Consensus 218 -----------~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~----~~vpyR~S~L 282 (325)
T cd01369 218 -----------TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS----THIPYRDSKL 282 (325)
T ss_pred -----------CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC----CcCCCccCHH
Confidence 1356789999999999999999999999999999999999999999999997652 5999999999
Q ss_pred hhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccc
Q 002730 324 TRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (887)
Q Consensus 324 TrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~I 366 (887)
|+||+|+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 283 T~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 283 TRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999987
No 17
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1e-76 Score=657.32 Aligned_cols=307 Identities=42% Similarity=0.621 Sum_probs=278.3
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceee-------------cceeEEcceeeCCCCCcchhhhhhhhhhHHHH
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDG 75 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~-------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~ 75 (887)
+|+|+|||||+.+.|...+...++.+.++ ..+.+ ..+.|+||+||++.+ +|++||+.++.|+|+.
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vf~~~~~plv~~ 79 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAV-TNEEVYRSTVKPLIPH 79 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCC-CHHHHHHHHHHHHHHH
Confidence 79999999999999987776666665544 22222 147899999999865 5899999999999999
Q ss_pred HhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccc
Q 002730 76 LFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVS 155 (887)
Q Consensus 76 ~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~ 155 (887)
+++|||+||||||||||||||||+|+. .++|||||++++||+.++... ..|.|.|||+|||||.|+|||++.
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~---~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~--- 151 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDE---NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLNDR--- 151 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcC---CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccCc---
Confidence 999999999999999999999999864 568999999999999998754 689999999999999999999762
Q ss_pred cccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEE
Q 002730 156 KSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLE 235 (887)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~ 235 (887)
+++.|++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.
T Consensus 152 -----------------~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~ 214 (322)
T cd01367 152 -----------------KRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILK 214 (322)
T ss_pred -----------------cceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccC-CCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCC
Q 002730 236 QMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTG-SDGLRLKEGIHINRGLLALGNVISALGDEKKRREGV 314 (887)
Q Consensus 236 q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~-~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~ 314 (887)
+... ....|+|+|||||||||...++ ..|.+++|+.+||+||++|++||.+|+.++ .
T Consensus 215 ~~~~-----------------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-----~ 272 (322)
T cd01367 215 NKKL-----------------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-----A 272 (322)
T ss_pred EecC-----------------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-----C
Confidence 7531 4568999999999999998765 578999999999999999999999998764 4
Q ss_pred CccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhc
Q 002730 315 HVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (887)
Q Consensus 315 ~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar 364 (887)
||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 273 ~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 273 HVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred cCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999986
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.7e-75 Score=645.50 Aligned_cols=308 Identities=39% Similarity=0.617 Sum_probs=278.8
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCc----ceee-------cceeEEcceeeCCCCCcchhhhhhhhhhHHHHHh
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP----QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF 77 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~----~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l 77 (887)
+|+|+|||||+.++| .+...|+.+.++++ .+.+ ..+.|.||+||++++ +|++||+.++.|+|+.++
T Consensus 1 ~i~V~vRvRP~~~~e--~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~plv~~~~ 77 (319)
T cd01376 1 NVRVVVRVRPFLDCE--EDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTEC-TQEDIFSREVKPIVPHLL 77 (319)
T ss_pred CcEEEEEeCcCCccc--cCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCC-CHHHHHHHHHHHHHHHHh
Confidence 589999999999988 44567776655432 3332 247899999999865 599999999999999999
Q ss_pred cCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKS 157 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~ 157 (887)
+|||+||||||||||||||||+|++ ..+|||||++++||+.++.. ...|.|.+||+|||||.|+|||++..
T Consensus 78 ~G~n~~i~ayG~tgSGKTyTm~G~~---~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~---- 148 (319)
T cd01376 78 SGQNATVFAYGSTGAGKTHTMLGDP---NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAK---- 148 (319)
T ss_pred CCCceEEEEECCCCCCCcEEEeCCc---CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCC----
Confidence 9999999999999999999999964 36899999999999988764 36899999999999999999998632
Q ss_pred cccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEee
Q 002730 158 VTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQM 237 (887)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~ 237 (887)
..+.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+.
T Consensus 149 ---------------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~ 213 (319)
T cd01376 149 ---------------KELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQP 213 (319)
T ss_pred ---------------CCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEE
Confidence 45889999999999999999999999999999999999999999999999999999999999875
Q ss_pred eccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCcc
Q 002730 238 RKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVP 317 (887)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iP 317 (887)
.. .....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.+. .|||
T Consensus 214 ~~----------------~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-----~~ip 272 (319)
T cd01376 214 AS----------------NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-----PRIP 272 (319)
T ss_pred CC----------------CceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-----CcCC
Confidence 32 23678999999999999999999999999999999999999999999998754 5999
Q ss_pred CCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhc
Q 002730 318 YRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (887)
Q Consensus 318 yRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar 364 (887)
||||+||+||+|+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 273 yr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 273 YRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred CccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999986
No 19
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=9.1e-75 Score=642.37 Aligned_cols=317 Identities=41% Similarity=0.674 Sum_probs=285.3
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec----ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEE
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATV 84 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~----~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv 84 (887)
+|+|+|||||+...|. .+...++.+.++ ..+.+. .+.|.||+||++++ +|++||+.++.|+|+++++|||+||
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~~~~~~f~fd~vf~~~~-~q~~vy~~~~~p~v~~~l~G~n~~i 77 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEESTPGQSFTFDRVFGGES-TNREVYERIAKPVVRSALEGYNGTI 77 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCCCCCeEEecCeEECCCC-CHHHHHHHHHHHHHHHHHCCCceeE
Confidence 5999999999999987 344556666655 344432 58999999999865 5899999999999999999999999
Q ss_pred EeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcccccccccCCCC
Q 002730 85 LAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHA 164 (887)
Q Consensus 85 ~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~ 164 (887)
||||||||||||||+|+. ..+|||||++++||..+.... ...|.|.|||+|||||.|+|||+|..
T Consensus 78 ~ayG~tgSGKT~T~~G~~---~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~----------- 142 (321)
T cd01374 78 FAYGQTSSGKTFTMSGDE---QEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP----------- 142 (321)
T ss_pred EeecCCCCCCceeccCCC---CCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC-----------
Confidence 999999999999999864 568999999999999998754 67899999999999999999998743
Q ss_pred CccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCC
Q 002730 165 GKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVS 244 (887)
Q Consensus 165 ~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~~ 244 (887)
.++.+++++.++++|.|++++.|.|++|+..+|..|..+|++++|.+|..|||||+||+|+|.+.....
T Consensus 143 --------~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--- 211 (321)
T cd01374 143 --------QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--- 211 (321)
T ss_pred --------CCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC---
Confidence 468999999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcch
Q 002730 245 PDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLT 324 (887)
Q Consensus 245 ~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKLT 324 (887)
+.......|+|+|||||||||..+++ .|.+++|+.+||+||++|++||.+|+.+.. ..||||||||||
T Consensus 212 --------~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~---~~~vpyR~SkLT 279 (321)
T cd01374 212 --------SESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN---SGHIPYRDSKLT 279 (321)
T ss_pred --------CCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC---CCcCCCcCCHHH
Confidence 12356788999999999999999998 899999999999999999999999998752 359999999999
Q ss_pred hhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccc
Q 002730 325 RLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (887)
Q Consensus 325 rLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~I 366 (887)
+||+|+|||||+|+|||||||...+++||++||+||+||++|
T Consensus 280 ~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 280 RILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.2e-74 Score=643.85 Aligned_cols=319 Identities=39% Similarity=0.587 Sum_probs=280.8
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceee---------------cceeEEcceeeCCCCCcchhhhhhhhhhHH
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI---------------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~---------------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv 73 (887)
+|+|+||+||+...+. .++.+.+.+.++.+ ..+.|+||+||++ + +|++||+.++.|+|
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~-~q~~vy~~~~~p~v 73 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-A-SQEEVYETVAKPVV 73 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-C-CHHHHHHHHHHHHH
Confidence 5899999999987442 12333333222111 2368999999998 4 69999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCcc
Q 002730 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (887)
Q Consensus 74 ~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (887)
+++++|||+||||||||||||||||+|+..+...+|||||++++||..++.. .+..|.|+|||+|||||.|+|||++..
T Consensus 74 ~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~ 152 (334)
T cd01375 74 DSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTP 152 (334)
T ss_pred HHHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCc
Confidence 9999999999999999999999999998766678999999999999999874 467899999999999999999998754
Q ss_pred cccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEE
Q 002730 154 VSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTIT 233 (887)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~ 233 (887)
.. ....+.+.|++++.++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+
T Consensus 153 ~~-------------~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~ 219 (334)
T cd01375 153 EA-------------LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIH 219 (334)
T ss_pred cc-------------cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEE
Confidence 21 12346799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCC
Q 002730 234 LEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREG 313 (887)
Q Consensus 234 v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~ 313 (887)
|.+..... .+.....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+.+. .
T Consensus 220 v~~~~~~~------------~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~----~ 283 (334)
T cd01375 220 LESRSREA------------GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKA----R 283 (334)
T ss_pred EEEEecCC------------CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCC----C
Confidence 99864321 1246788999999999999999999999999999999999999999999999765 3
Q ss_pred CCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhc
Q 002730 314 VHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (887)
Q Consensus 314 ~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar 364 (887)
.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++
T Consensus 284 ~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 284 THVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.5e-73 Score=629.55 Aligned_cols=321 Identities=42% Similarity=0.666 Sum_probs=288.6
Q ss_pred CceEEEEEeCCCCchhhccCCceEEEEeCCC-cceeec-----ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCC
Q 002730 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGN-PQVQIG-----THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN 81 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~v~~~-----~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N 81 (887)
++|+|+|||||+...|. .....++.+.++. ..+.+. .+.|+||+||++++ +|++||+. +.|+|+++++|||
T Consensus 2 ~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~-v~p~v~~~~~G~~ 78 (329)
T cd01366 2 GNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDA-SQEDVFEE-VSPLVQSALDGYN 78 (329)
T ss_pred CCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCC-CHHHHHHH-HHHHHHHHhCCCc
Confidence 68999999999998886 3344566666553 444432 37899999999765 58999997 6999999999999
Q ss_pred eEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcc-cceEEEEEeeeeeehhhHhhccCCccccccccc
Q 002730 82 ATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (887)
+||||||+|||||||||+|+. ..+|||||++++||..+..... ...|.|.+||+|||||.|+|||++..
T Consensus 79 ~~i~ayG~tgSGKT~tl~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------- 148 (329)
T cd01366 79 VCIFAYGQTGSGKTYTMEGPP---ENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP------- 148 (329)
T ss_pred eEEEEeCCCCCCCcEEecCCC---CCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc-------
Confidence 999999999999999999964 6689999999999999988755 68899999999999999999998743
Q ss_pred CCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002730 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (887)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~ 240 (887)
...+++.|++++.++++|.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 ---------~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~ 219 (329)
T cd01366 149 ---------APKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ 219 (329)
T ss_pred ---------CCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC
Confidence 12467999999999999999999999999999999999999999999999999999999999999976431
Q ss_pred ccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCC
Q 002730 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (887)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRd 320 (887)
+.....|+|+||||||||+..++++.|.+++|+.+||+||++|++||.+|+.+ ..|||||+
T Consensus 220 --------------~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-----~~~ipyr~ 280 (329)
T cd01366 220 --------------TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-----DSHVPYRN 280 (329)
T ss_pred --------------CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-----CCcCCCcc
Confidence 24578899999999999999999999999999999999999999999999876 35999999
Q ss_pred CcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccc
Q 002730 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (887)
Q Consensus 321 SKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~ 369 (887)
||||+||+|+||||++|+||+||||...+++||++||+||+||++|+|.
T Consensus 281 S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 281 SKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred cHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=2e-72 Score=627.85 Aligned_cols=327 Identities=49% Similarity=0.757 Sum_probs=299.3
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCc-ceee-------cceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCC
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNP-QVQI-------GTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY 80 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~-~v~~-------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~ 80 (887)
+|+|+|||||+...|...++..|+.+.++.+ +|.+ ..+.|+||+||++++ +|++||+.++.|+|+.+++|+
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~-~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATA-SQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCC-ChHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999998888999998877754 3443 237899999998765 589999999999999999999
Q ss_pred CeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCccccccccc
Q 002730 81 NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTA 160 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~ 160 (887)
|+||||||+|||||||||+|+ ..++||||+++++||..+........|.|+|||+|||+|.|+|||++.
T Consensus 80 ~~~i~~yG~tgSGKT~tl~G~---~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~-------- 148 (335)
T smart00129 80 NATIFAYGQTGSGKTYTMSGT---PDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS-------- 148 (335)
T ss_pred ceeEEEeCCCCCCCceEecCC---CCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--------
Confidence 999999999999999999885 456899999999999999887667899999999999999999999863
Q ss_pred CCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecc
Q 002730 161 NGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKL 240 (887)
Q Consensus 161 ~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~ 240 (887)
+.++.|++++++++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|.+....
T Consensus 149 -----------~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~ 217 (335)
T smart00129 149 -----------PKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN 217 (335)
T ss_pred -----------CCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC
Confidence 256899999999999999999999999999999999999999999999999999999999999976321
Q ss_pred ccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCC
Q 002730 241 HSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRD 320 (887)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRd 320 (887)
+.......|+|+|||||||||..++++.|.+++|+..||+||.+|++||.+|+++. +..|||||+
T Consensus 218 ------------~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~---~~~~ip~r~ 282 (335)
T smart00129 218 ------------SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQ---KSRHIPYRD 282 (335)
T ss_pred ------------CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcC---CCCCCCCcC
Confidence 12356789999999999999999999999999999999999999999999999753 246999999
Q ss_pred CcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccc
Q 002730 321 SKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVN 373 (887)
Q Consensus 321 SKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn 373 (887)
|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+|+|++|
T Consensus 283 S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 283 SKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999999999999999999999999999999999999875
No 23
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-73 Score=671.35 Aligned_cols=324 Identities=40% Similarity=0.622 Sum_probs=287.3
Q ss_pred CceEEEEEeCCCCchhhccCCceEEEEeCCCcceee--c-------ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhc
Q 002730 8 CSVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI--G-------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ 78 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~--~-------~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~ 78 (887)
|+|+|+|||||+.+.+....+...+ ..++...+.+ . .+.|.||+||+|.++ |++||.. +.|+|.++|+
T Consensus 314 GnIRV~CRvRP~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~s-Q~~VF~e-~~~lv~S~lD 390 (670)
T KOG0239|consen 314 GNIRVFCRVRPLLPSEKQRLQSKVI-DTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLAS-QDDVFEE-VSPLVQSALD 390 (670)
T ss_pred cCceEEEEecCCCcccccccccccc-ccCCcceeEeecCCCCCCCccccceeeeecCCccc-HHHHHHH-HHHHHHHHhc
Confidence 7899999999999988654322222 2222111221 1 135999999999765 9999988 8999999999
Q ss_pred CCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhhccCCccccccc
Q 002730 79 GYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (887)
Q Consensus 79 G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~ 158 (887)
|||+||||||||||||||||.|+ .+..+|||||++++||..+......|.|.+.+||+|||||.|+|||++..
T Consensus 391 GYnVCIFAYGQTGSGKTyTM~G~--~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~----- 463 (670)
T KOG0239|consen 391 GYNVCIFAYGQTGSGKTYTMSGP--TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES----- 463 (670)
T ss_pred CcceeEEEecccCCCccccccCC--CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc-----
Confidence 99999999999999999999886 56679999999999999999998899999999999999999999998642
Q ss_pred ccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeee
Q 002730 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (887)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~ 238 (887)
....+.|+.++++.++|.|++.+.|.+.+++..+++.|..+|++++|++|.+|||||+||+|+|....
T Consensus 464 ------------~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~ 531 (670)
T KOG0239|consen 464 ------------YVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGIN 531 (670)
T ss_pred ------------cccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccc
Confidence 12468999999999999999999999999999999999999999999999999999999999997542
Q ss_pred ccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccC
Q 002730 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (887)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPy 318 (887)
. .......+.|+|||||||||+++++++|+|++|+.+||+||++||+||.||+.. .+||||
T Consensus 532 ~--------------~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k-----~~HiPy 592 (670)
T KOG0239|consen 532 E--------------LTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASK-----RSHIPY 592 (670)
T ss_pred c--------------CcccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhc-----CCCCcc
Confidence 1 135667889999999999999999999999999999999999999999999984 359999
Q ss_pred CCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccccccccc
Q 002730 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVV 372 (887)
Q Consensus 319 RdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~v 372 (887)
||||||+||||||||+++|+|+++|||...++.||+++|+||.|++.+...|..
T Consensus 593 RNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 593 RNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred cccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999999999999999987654
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.6e-71 Score=614.52 Aligned_cols=322 Identities=48% Similarity=0.746 Sum_probs=280.8
Q ss_pred EeCCCCchhhccCCceEEEEeCC---------CcceeecceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEE
Q 002730 15 HVRPLIGDERAQGCKECVAVTHG---------NPQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVL 85 (887)
Q Consensus 15 RvRP~~~~E~~~~~~~~~~~~~~---------~~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~ 85 (887)
||||+++.|...+...++.+... ..........|.||+||++++ +|++||+.++.|+|+++|+|||+|||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~~v~~~l~G~n~~i~ 79 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDA-TQEDVYEEVVSPLVDSVLDGYNATIF 79 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTS-THHHHHHHHTHHHHHHHHTT-EEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCC-CHHHHHHHHHHHHHHHhhcCCceEEE
Confidence 89999999998888887765421 111122347999999999765 59999999999999999999999999
Q ss_pred eeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhccc--ceEEEEEeeeeeehhhHhhccCCcccccccccCCC
Q 002730 86 AYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQ--MEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGH 163 (887)
Q Consensus 86 aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~--~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~ 163 (887)
|||+|||||||||+|+ .....+||||+++++||..+...... ..|.|+|||+|||||.|+|||++...
T Consensus 80 ayG~tgSGKT~Tm~G~-~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--------- 149 (335)
T PF00225_consen 80 AYGQTGSGKTYTMFGS-NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--------- 149 (335)
T ss_dssp EEESTTSSHHHHHTBS-TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS---------
T ss_pred eecccccccccccccc-ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc---------
Confidence 9999999999999996 34667999999999999999986654 78999999999999999999987531
Q ss_pred CCccccCCCCCceeEecCCCc-EEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeecccc
Q 002730 164 AGKVSISGRPPIQIRESSNGV-ITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHS 242 (887)
Q Consensus 164 ~~~~~~~~~~~l~i~e~~~~~-~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~ 242 (887)
....++.|++++..| ++|.|++++.|.|+++++.+|..|..+|.+++|.+|..|||||+||+|+|.+......
T Consensus 150 ------~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~ 223 (335)
T PF00225_consen 150 ------KSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPS 223 (335)
T ss_dssp ------STTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTT
T ss_pred ------ccccccceeeccccccceeeccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 123479999999876 9999999999999999999999999999999999999999999999999998764321
Q ss_pred CCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCC-CcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCC
Q 002730 243 VSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGS-DGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDS 321 (887)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~-~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdS 321 (887)
........|+|+|||||||||..++++ .|.+++|+..||+||.+|++||.+|+... ...|||||+|
T Consensus 224 ----------~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~---~~~~vpyr~S 290 (335)
T PF00225_consen 224 ----------DDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGS---KQSHVPYRDS 290 (335)
T ss_dssp ----------TEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTT---STSSSCGGGS
T ss_pred ----------ccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhccc---cchhhhhhcc
Confidence 000136899999999999999999886 48899999999999999999999999872 3469999999
Q ss_pred cchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhccc
Q 002730 322 KLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRARNI 366 (887)
Q Consensus 322 KLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~I 366 (887)
|||+||+|+|||||+|+||+||||...+++||++||+||++|++|
T Consensus 291 kLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 291 KLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred cccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-70 Score=602.16 Aligned_cols=323 Identities=36% Similarity=0.569 Sum_probs=285.3
Q ss_pred CCCceEEEEEeCCCCchhhccCCceEEEEe------CCCcceee------cceeEEcceeeCCCCCcchhhhhhhhhhHH
Q 002730 6 ENCSVKVAVHVRPLIGDERAQGCKECVAVT------HGNPQVQI------GTHSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (887)
Q Consensus 6 ~~~~v~V~vRvRP~~~~E~~~~~~~~~~~~------~~~~~v~~------~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv 73 (887)
....|.|+||=||++.+|.....-+.++|. .++|...+ ..+.|.|||+||..++ ++.||..+++|||
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s-Ne~VYrfTa~PlV 284 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS-NELVYRFTAKPLV 284 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc-hHHHHHHhhhHHH
Confidence 345799999999999999877666666653 23444333 3589999999998765 8999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCcccccCCCCCC---CCcccchHHHHHHHHHHHHhh-cccceEEEEEeeeeeehhhHhhcc
Q 002730 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLRE---GFQTGLIPQVMNALFNKIETL-RHQMEFQLHVSFIEILKEEVRDLL 149 (887)
Q Consensus 74 ~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~---~~~~GiIpr~~~~LF~~i~~~-~~~~~~~v~vS~~EIynE~v~DLL 149 (887)
..+|+|--+|+||||||||||||||||.|.. ....||--++.+++|..+... -....+.|++||||||+.+|||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL 364 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLL 364 (676)
T ss_pred HHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhh
Confidence 9999999999999999999999999999873 345799999999999998762 224689999999999999999999
Q ss_pred CCcccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEE
Q 002730 150 DSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAI 229 (887)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaI 229 (887)
++ +..+.+.||.+..+.|.||++..|.+.+|++.+|+.|+..|+++.|..|..|||||||
T Consensus 365 ~~--------------------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAv 424 (676)
T KOG0246|consen 365 ND--------------------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAV 424 (676)
T ss_pred cc--------------------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCccccccccee
Confidence 75 3569999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccc-cCCCcchhhhhhhhhhhhHHHHHHHHHhhhhc
Q 002730 230 FTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKR-TGSDGLRLKEGIHINRGLLALGNVISALGDEK 308 (887)
Q Consensus 230 fti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~-t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~ 308 (887)
|+|.+.... ....++||.||||||+||... +.++.++..||..||+||+||-.||.||+.++
T Consensus 425 fQIilr~~~-----------------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk 487 (676)
T KOG0246|consen 425 FQIILRKHG-----------------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 487 (676)
T ss_pred EeeeeecCC-----------------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC
Confidence 999997532 356789999999999999855 45666788899999999999999999998775
Q ss_pred cCCCCCCccCCCCcchhhhhhcCCC-CceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccc
Q 002730 309 KRREGVHVPYRDSKLTRLLQDSLGG-NSKTVMIACISPADINAEESLNTLKYANRARNIQNKPV 371 (887)
Q Consensus 309 ~~~~~~~iPyRdSKLTrLLqdsLgG-ns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~ 371 (887)
.|+|||.||||.+|+|||=| ||+|+||+||||...+.+.||||||||+|++.....+.
T Consensus 488 -----~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 488 -----SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred -----CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 49999999999999999977 99999999999999999999999999999999876544
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.4e-69 Score=601.62 Aligned_cols=318 Identities=48% Similarity=0.752 Sum_probs=285.5
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceeec---------ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcC
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQIG---------THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG 79 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~~---------~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G 79 (887)
+|+|+|||||+...| ..+...|+.+.++ ..|.+. .+.|+||+||++++ +|++||+.++.|+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDGRKAGPKSFTFDHVFDPNS-TQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccccCcCceEEECCeEEcCCC-CHHHHHHHHHHHHHHHHhCC
Confidence 589999999999877 4456778877764 334432 38999999999865 59999999999999999999
Q ss_pred CCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcc-cceEEEEEeeeeeehhhHhhccCCccccccc
Q 002730 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDSVSVSKSV 158 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~ 158 (887)
||+||||||+|||||||||+|+. ..+||||+++++||..+..... ...|.|.+||+|||+|.|+|||++..
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~---~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----- 149 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSP---KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----- 149 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCC---CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-----
Confidence 99999999999999999999954 5699999999999999988543 57899999999999999999998742
Q ss_pred ccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeee
Q 002730 159 TANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMR 238 (887)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~ 238 (887)
...++.|++++.+++++.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+..
T Consensus 150 ------------~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~ 217 (328)
T cd00106 150 ------------PSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRN 217 (328)
T ss_pred ------------CCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEe
Confidence 13579999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccC
Q 002730 239 KLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPY 318 (887)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPy 318 (887)
.... ......|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.+.. ..||||
T Consensus 218 ~~~~------------~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~---~~~ip~ 282 (328)
T cd00106 218 TTND------------GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK---KKHIPY 282 (328)
T ss_pred cCCC------------CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC---CCcCCC
Confidence 3221 1147899999999999999999999999999999999999999999999998652 359999
Q ss_pred CCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhc
Q 002730 319 RDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (887)
Q Consensus 319 RdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar 364 (887)
|+||||+||+|+||||++|+||+||||...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999986
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-68 Score=602.16 Aligned_cols=334 Identities=36% Similarity=0.577 Sum_probs=290.0
Q ss_pred ceEEEEEeCCCCchhhccCCceEEEEeCCCcceee-------------c--ceeEEcceeeCCCCCcchhhhhhhhhhHH
Q 002730 9 SVKVAVHVRPLIGDERAQGCKECVAVTHGNPQVQI-------------G--THSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~v~~-------------~--~~~F~FD~Vf~~~~s~q~~vy~~~v~plv 73 (887)
+|.|+||+||+.+. .+...|+.|......+-. + .+.|.|.+||+|.++ |.+||+.|+.|+|
T Consensus 32 ~v~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~t-Q~dvF~~~~~plV 107 (809)
T KOG0247|consen 32 PVLVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVT-QADVFDTTVAPLV 107 (809)
T ss_pred chheeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCcc-HHHHHHHHhHHHH
Confidence 79999999999863 233456655444332211 1 267999999998765 8999999999999
Q ss_pred HHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhc---------------------------
Q 002730 74 DGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLR--------------------------- 126 (887)
Q Consensus 74 ~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~--------------------------- 126 (887)
.+++.|.|..+|+||.|||||||||.|+. ..+||+||+++.||..|....
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~---~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTP---DRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCC---CCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998854 458999999999999985410
Q ss_pred -------------------------------------ccceEEEEEeeeeeehhhHhhccCCcccccccccCCCCCcccc
Q 002730 127 -------------------------------------HQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSI 169 (887)
Q Consensus 127 -------------------------------------~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~ 169 (887)
.+..|.|+|||+|||||-|||||.+.+..
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q-------------- 250 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQ-------------- 250 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccccc--------------
Confidence 12458999999999999999999876421
Q ss_pred CCCCC-ceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCC
Q 002730 170 SGRPP-IQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNG 248 (887)
Q Consensus 170 ~~~~~-l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~~~~~~ 248 (887)
+..+. ..+++|.+|..||.|+++|.|+|.+|++.+|..|..+|++++|..|..|||||+||+|.|.+....
T Consensus 251 ~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~-------- 322 (809)
T KOG0247|consen 251 GKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS-------- 322 (809)
T ss_pred chhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc--------
Confidence 11122 568899999999999999999999999999999999999999999999999999999999875421
Q ss_pred CCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcchhhhh
Q 002730 249 TPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQ 328 (887)
Q Consensus 249 ~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKLTrLLq 328 (887)
.....+..|.|.|||||||||..+|++.|.|++||++||.||++||+||.+|..+++.+...+|||||||||++++
T Consensus 323 ----~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq 398 (809)
T KOG0247|consen 323 ----QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFK 398 (809)
T ss_pred ----cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHH
Confidence 1236788999999999999999999999999999999999999999999999998887778899999999999999
Q ss_pred hcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccccccccc
Q 002730 329 DSLGGNSKTVMIACISPADINAEESLNTLKYANRARNIQNKPVVNRD 375 (887)
Q Consensus 329 dsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~p~vn~d 375 (887)
.+|.|..+.+||+||+|.+.+|+|+++.|+||.-|..|.+.+-++..
T Consensus 399 ~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~~~ 445 (809)
T KOG0247|consen 399 NYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVIKK 445 (809)
T ss_pred HhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccccc
Confidence 99999999999999999999999999999999999999987766543
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-63 Score=585.86 Aligned_cols=290 Identities=49% Similarity=0.759 Sum_probs=268.6
Q ss_pred ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHh
Q 002730 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIET 124 (887)
Q Consensus 45 ~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~ 124 (887)
...|.||+||++.++ |++||+.++.|+++.++.||||||||||||||||||||.|. ...+||||+++.+||+.++.
T Consensus 55 ~~~~~fdkvf~~~~~-q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~---~~~~Gii~~~l~~lf~~l~~ 130 (568)
T COG5059 55 EGTYAFDKVFGPSAT-QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGT---EEEPGIIPLSLKELFSKLED 130 (568)
T ss_pred ceEEEEeeccCCCCc-HHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecC---ccccchHHHHHHHHHHHHHh
Confidence 356999999998765 99999999999999999999999999999999999999885 46799999999999999999
Q ss_pred hcccceEEEEEeeeeeehhhHhhccCCcccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHH
Q 002730 125 LRHQMEFQLHVSFIEILKEEVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAAC 204 (887)
Q Consensus 125 ~~~~~~~~v~vS~~EIynE~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~ 204 (887)
......|.|.|||+|||||+++|||.|.. ..+.++++..++++|.|++++.|.+++|++.+
T Consensus 131 ~~~~~~~~v~is~lEiYnEk~~DLl~~~~-------------------~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~ 191 (568)
T COG5059 131 LSMTKDFAVSISYLEIYNEKIYDLLSPNE-------------------ESLNIREDSLLGVKVAGLTEKHVSSKEEILDL 191 (568)
T ss_pred cccCcceeeEeehhHHHhhHHHhhccCcc-------------------ccccccccCCCceEeecceEEecCChHHHHHH
Confidence 87777899999999999999999998754 12678999999999999999999999999999
Q ss_pred HHhcccccccccCCCCCCCCCcEEEEEEEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchh
Q 002730 205 LEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRL 284 (887)
Q Consensus 205 l~~g~~~R~~~~T~~N~~SSRSHaIfti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~ 284 (887)
|.+|..+|++++|.+|..|||||+||+|++.+..... .....++|+||||||||++..++..|.|+
T Consensus 192 l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~--------------~~~~~~~l~lvDLagSE~~~~~~~~~~r~ 257 (568)
T COG5059 192 LRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS--------------GTSETSKLSLVDLAGSERAARTGNRGTRL 257 (568)
T ss_pred HHHhhhhcccccchhccccccceEEEEEEEEEeccCc--------------cceecceEEEEeeccccccchhhcccchh
Confidence 9999999999999999999999999999999876432 22233799999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHhhhhccCCCCCCccCCCCcchhhhhhcCCCCceeeEEEecCCCCCCHHHHHHHHHHHHHhc
Q 002730 285 KEGIHINRGLLALGNVISALGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISPADINAEESLNTLKYANRAR 364 (887)
Q Consensus 285 kEg~~IN~SL~aLg~VI~aL~~~~~~~~~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP~~~~~~ETl~TL~fa~rar 364 (887)
+||..||+||++||+||++|.+.+ +..|||||+|||||+|+++||||++|+|||||+|+..++++|.+||+||+||+
T Consensus 258 ~E~~~iN~sLl~Lg~vI~~L~~~~---~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak 334 (568)
T COG5059 258 KEGASINKSLLTLGNVINALGDKK---KSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAK 334 (568)
T ss_pred hhhhhhHhhHHHHHHHHHHHhccc---cCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHh
Confidence 999999999999999999999852 35699999999999999999999999999999999999999999999999999
Q ss_pred cccccccccc
Q 002730 365 NIQNKPVVNR 374 (887)
Q Consensus 365 ~Ikn~p~vn~ 374 (887)
+|+|+|++|.
T Consensus 335 ~I~~~~~~~~ 344 (568)
T COG5059 335 SIKNKIQVNS 344 (568)
T ss_pred hcCCcccccC
Confidence 9999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5.4e-50 Score=410.46 Aligned_cols=179 Identities=50% Similarity=0.806 Sum_probs=164.3
Q ss_pred hhhhhhhhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehh
Q 002730 64 MFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (887)
Q Consensus 64 vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE 143 (887)
||+.++ |+|+.+++|||+||||||||||||||||+|+. .+.||||+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~---~~~Giip~~~~~-------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR---EGAGIIPRTVTD-------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC---CCCCcchHHHHH--------------------------
Confidence 999988 99999999999999999999999999998854 678999999887
Q ss_pred hHhhccCCcccccccccCCCCCccccCCCCCceeEecCCCcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCC
Q 002730 144 EVRDLLDSVSVSKSVTANGHAGKVSISGRPPIQIRESSNGVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQS 223 (887)
Q Consensus 144 ~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~S 223 (887)
++.+|..|..+|.+++|.+|..|
T Consensus 58 ---------------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~S 80 (186)
T cd01363 58 ---------------------------------------------------------VIDLMDKGNANRTTAATAMNEHS 80 (186)
T ss_pred ---------------------------------------------------------HHHHHhhccccccccccCCCCcc
Confidence 67788899999999999999999
Q ss_pred CCcEEEEEEEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHH
Q 002730 224 SRSHAIFTITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISA 303 (887)
Q Consensus 224 SRSHaIfti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~a 303 (887)
||||+||+|+|.+..... +.......|+|+|||||||||..++++.|.+++|+.+||+||.+|++||.+
T Consensus 81 SRsH~i~~i~v~~~~~~~-----------~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~ 149 (186)
T cd01363 81 SRSHSVFRIHFGGKNALA-----------SATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISA 149 (186)
T ss_pred CcccEEEEEEEEEeecCC-----------CCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999865322 112456789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCCccCCCCcchhhhhhcCCCCceeeEEEecCC
Q 002730 304 LGDEKKRREGVHVPYRDSKLTRLLQDSLGGNSKTVMIACISP 345 (887)
Q Consensus 304 L~~~~~~~~~~~iPyRdSKLTrLLqdsLgGns~t~mI~~vsP 345 (887)
|+... .||||||||||+||+|+|||||+|+||+||||
T Consensus 150 l~~~~-----~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 150 LAERD-----SHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCC-----CCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 98754 49999999999999999999999999999999
No 30
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.63 E-value=0.00012 Score=90.03 Aligned_cols=208 Identities=18% Similarity=0.173 Sum_probs=127.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 569 TQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREK 648 (887)
Q Consensus 569 ~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~k 648 (887)
..+..++|-+.++....+..++..+............+...++........++.......+.-++++..-.........+
T Consensus 565 l~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~ 644 (1317)
T KOG0612|consen 565 LRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKK 644 (1317)
T ss_pred HhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Confidence 33444556556655555444554444333333222333333333333333344444444555566666666666666667
Q ss_pred HHHHHHHhhhhhHHH----HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcH
Q 002730 649 ELLKLKKEGRKNEFE----RHK--LEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNE 722 (887)
Q Consensus 649 Ei~qLkk~~rk~~~e----i~~--l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~ 722 (887)
++.+++. .++...+ .-+ ++..++++..++...+++..+.++|+ .+ ..+
T Consensus 645 ~l~k~~e-l~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~-~L-~~~----------------------- 698 (1317)
T KOG0612|consen 645 ELLKVEE-LKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL-RL-QDK----------------------- 698 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hhH-----------------------
Confidence 7766666 4443333 334 88899999999999999999999999 22 110
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCc--------ccccccCChHHH
Q 002730 723 KSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNG--------HSRLSSLSPNAR 794 (887)
Q Consensus 723 ~~~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~r 794 (887)
..+-.++..|+.+.+.+++++.+.+.++..+++.|+....+.. +.+|+.++. ..+++.++.++.
T Consensus 699 ------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~--~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~ 770 (1317)
T KOG0612|consen 699 ------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQ--EKLNELRRSKDQLITEVLKLQSMLEQEIS 770 (1317)
T ss_pred ------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhc--cchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999999999999999999999998644433 356766654 334445554555
Q ss_pred HHHHHHHHHHHhhcHHHHH
Q 002730 795 MERIASLENMLNMSSKALV 813 (887)
Q Consensus 795 ~~qi~~le~~l~~~~~~~~ 813 (887)
++.. ++.+|. ++.+.+
T Consensus 771 ~r~~--~~~eLs-sq~~~~ 786 (1317)
T KOG0612|consen 771 KRLS--LQRELK-SQEQEV 786 (1317)
T ss_pred Hhhh--hHHHhh-hHHHhh
Confidence 4444 666665 444433
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.17 E-value=0.012 Score=77.89 Aligned_cols=153 Identities=25% Similarity=0.317 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHH
Q 002730 501 DKELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (887)
Q Consensus 501 ~~EL~eLnk~Le~KE~~~~~~~~--~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~ 578 (887)
.....+|+.++.-++.++..+.. .+...+..++.+++.+|+.+|..++.+.+.-... +...++
T Consensus 1061 ~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~---------------r~K~ek 1125 (1930)
T KOG0161|consen 1061 KKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERAS---------------RAKAER 1125 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 34455566666666655554431 1122233333344444444444433333332222 233345
Q ss_pred HHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 579 KLKALEAQILELKKKQES---------------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWK 643 (887)
Q Consensus 579 kl~~Le~el~~Lkkk~~~---------------~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k 643 (887)
...+|..++.+|+..+.+ -.++.+++...++........+..|+..+..-+..+....+.....+
T Consensus 1126 ~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k 1205 (1930)
T KOG0161|consen 1126 QRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDK 1205 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666555544444 34566677888888888888899999888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 644 ASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 644 ~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
+..+|+=..|..+.--...++..+.
T Consensus 1206 ~~lekek~~lq~e~~~l~~ev~~~~ 1230 (1930)
T KOG0161|consen 1206 AKLEKEKSDLQREIADLAAELEQLS 1230 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877777766666666655444
No 32
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.17 E-value=2.7e-08 Score=118.42 Aligned_cols=255 Identities=22% Similarity=0.263 Sum_probs=152.6
Q ss_pred CCCCCCceEEEEEeCCCCchhh---------ccCCceEEEEeCCC-cceeecceeEEcceeeCCCCCcchhhhhhhhhhH
Q 002730 3 TASENCSVKVAVHVRPLIGDER---------AQGCKECVAVTHGN-PQVQIGTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (887)
Q Consensus 3 ~~~~~~~v~V~vRvRP~~~~E~---------~~~~~~~~~~~~~~-~~v~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (887)
.-++.+.++|+|+|+|...... ......-..+..+. .++...-..|.||.+|.+... ...++. ....+
T Consensus 300 sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~-~~~~~ 377 (568)
T COG5059 300 SLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEI-EILVFR-EQSQL 377 (568)
T ss_pred hcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhh-hhHHHH-HHHhh
Confidence 4467789999999999884321 00111111111111 122233468999999986543 444443 35666
Q ss_pred HHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcc-cceEEEEEeeeeeehhhHhhccCC
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRH-QMEFQLHVSFIEILKEEVRDLLDS 151 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~-~~~~~v~vS~~EIynE~v~DLL~~ 151 (887)
++.-+.| +++||++++|+++|| .....++.+-.+...|..+..... .+.+...+-++++|-....+++..
T Consensus 378 ~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e 448 (568)
T COG5059 378 SQSSLSG----IFAYMQSLKKETETL-----KSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREE 448 (568)
T ss_pred hhhhhhh----HHHHHhhhhhhhhcc-----cchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777 899999999999999 334456666666888877766433 345566666777773333333322
Q ss_pred cccccccccCCCCCccccCCCCCceeEecCC-CcEEEcCceEEEcCCHHHHHHHHHhcccccccccCCCCCCCCCcEEEE
Q 002730 152 VSVSKSVTANGHAGKVSISGRPPIQIRESSN-GVITLAGSTEVAVNTLQEMAACLEQGSLSRATGSTNMNNQSSRSHAIF 230 (887)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~i~e~~~-~~~~v~glte~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSHaIf 230 (887)
.... +.-.+..... +.....-++ .......+..... .....+..+.+..|..++++|.+|
T Consensus 449 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~ 509 (568)
T COG5059 449 ELSK-----------------KKTKIHKLNKLRHDLSSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKF 509 (568)
T ss_pred hcCC-----------------hHHHHHHHHHHHHHHHHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhcccchhh
Confidence 1100 0000000000 000000000 0001111111111 456778889999999999999999
Q ss_pred EEEEEeeeccccCCCCCCCCCCCCCCceEEeeeeeeecCCCccccccCCCcchhhhhhhhhhhhHHHHHHHHHhh
Q 002730 231 TITLEQMRKLHSVSPDNGTPDEDMDEEYFCAKLHLVDLAGSERAKRTGSDGLRLKEGIHINRGLLALGNVISALG 305 (887)
Q Consensus 231 ti~v~q~~~~~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~r~kEg~~IN~SL~aLg~VI~aL~ 305 (887)
+.......... .. .+ ++.|||||+||. ....-|.++++..++|++|..+|.+|.++.
T Consensus 510 ~~~~~~~~~~~--------------~~-~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 510 RDHLNGSNSST--------------KE-LS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hhcccchhhhh--------------HH-HH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 87654321100 01 11 799999999999 889999999999999999999999998874
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.11 E-value=0.039 Score=73.24 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=16.9
Q ss_pred cCCCeEEEeeccCCCCcccc
Q 002730 78 QGYNATVLAYGQTGSGKTYT 97 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyT 97 (887)
++-|-+|++.|-+|+|||-.
T Consensus 165 ~renQSiLiTGESGAGKTeN 184 (1930)
T KOG0161|consen 165 DRENQSILITGESGAGKTEN 184 (1930)
T ss_pred cCCCceEeeecCCCCCcchh
Confidence 57888999999999999864
No 34
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.71 E-value=0.42 Score=62.58 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=12.0
Q ss_pred EeeccCCCCccccc
Q 002730 85 LAYGQTGSGKTYTM 98 (887)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (887)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999887
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.64 E-value=0.53 Score=61.92 Aligned_cols=129 Identities=20% Similarity=0.322 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHH
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~ 578 (887)
.+..++..++..|...+.....+.+.+.+.+.... .++-++..++..++.+.+.|......+....+....++.+.+..
T Consensus 317 ~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~-~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~ 395 (1201)
T PF12128_consen 317 ALNADLARIKSELDEIEQQKKDYEDADIEQLIARV-DQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNR 395 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555554444332 45566666666666666666666666655555555566666655
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002730 579 KLKALEAQILELKKKQES---------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (887)
Q Consensus 579 kl~~Le~el~~Lkkk~~~---------~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L 628 (887)
.+..++.++..++..... +.-.....+..+..+..++.+...++.+...+
T Consensus 396 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 454 (1201)
T PF12128_consen 396 QQERLQAQQDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAEL 454 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544422222 11111233344444555555555555544444
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.63 E-value=0.2 Score=58.90 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
.|..+++.+...+.+..-|..+|..+
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555554455443
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.28 Score=60.07 Aligned_cols=316 Identities=18% Similarity=0.212 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCc-chHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhh
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDI-DTEALRHH-----FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQK 571 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~-~~~~lk~~-----ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~K 571 (887)
.+.+..|..|+.+|..+|++-+.+... ..+..+.. |+..+.+...++..|..-+......-......-+ +..-
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~-~~~d 265 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALD-KVED 265 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH-HHHH
Confidence 455666777777777777655544321 11122221 3344444444444333333222111000000000 0011
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 572 MQDGHTLKLKALEAQILELKKK----QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASRE 647 (887)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lkkk----~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~ 647 (887)
-.+.....+++|+..+.-|+.. ..+..++++.+-+.+-+++.|+.+|..=+ +.+....
T Consensus 266 ~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~------------------q~r~~~l 327 (1200)
T KOG0964|consen 266 ESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNE------------------QQRNLAL 327 (1200)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh------------------hhhhhHH
Confidence 1122334555555555555431 12234455555555555555555555444 4444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHH
Q 002730 648 KELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQK 727 (887)
Q Consensus 648 kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~ 727 (887)
..+..++.+--..+.|+.+.+-.+....-==.+-...++.+..+.++++.++- ..+...+.+....
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqg--------------r~sqFssk~eRDk 393 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQG--------------RYSQFSSKEERDK 393 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc--------------cccccCcHHHHHH
Confidence 55555666666677777777766665533333333445555556666665431 1122345678899
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCCCCCCCCCC--ccccc----ccCChHHHHHHHH
Q 002730 728 WLEHELEVSAN-VHEVRFKYEKQSQVQAALADELTILKQVD-QLSLNGHSPQRGKN--GHSRL----SSLSPNARMERIA 799 (887)
Q Consensus 728 w~~~e~ei~~~-v~e~~~~le~l~~~R~~l~~el~~Lk~~~-~~~~~~~~~~~~~~--~~~~~----~~~~~~~r~~qi~ 799 (887)
|+..|++-+-. +.+-...-+.++-+++.+..++...-..- ......+. .+++- .+... ..++ +...++-
T Consensus 394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e-~~~r~~~~~~~~~~~k~~~d-el~~~Rk- 470 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINE-TKGRMEEFDAENTELKRELD-ELQDKRK- 470 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-hhhHHHHHHHHHHHHHHHHH-HHHHHHH-
Confidence 99999987653 44444455555555555555544322210 00000000 00000 00000 0111 0111110
Q ss_pred HHHHHHhhcHHHHHHHHHHhHHHHHHHhhhcccccccccCCHHHHHHHHH
Q 002730 800 SLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQ 849 (887)
Q Consensus 800 ~le~~l~~~~~~~~~~~~~l~eae~~~~~~~~~~~~~~i~s~~eAk~~l~ 849 (887)
+|=-+=...+..|..+.+.|+-++..-++..++...++|.++-+-.+=++
T Consensus 471 ~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k 520 (1200)
T KOG0964|consen 471 ELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELK 520 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 01001112233456666777777877777777888999999988877766
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.51 E-value=0.094 Score=61.13 Aligned_cols=64 Identities=23% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002730 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (887)
Q Consensus 598 ~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~ 672 (887)
.+|...+...+.+...|...+..++.++..|..+. ..+..++.+|+++....+.++.+|++...
T Consensus 180 ~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k-----------~e~~~~l~~L~~~~~~~~~~l~~l~~~~~ 243 (428)
T PRK11637 180 EELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQAR-----------NERKKTLTGLESSLQKDQQQLSELRANES 243 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555444444 33444444444444444444444444333
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.48 E-value=0.21 Score=55.50 Aligned_cols=108 Identities=17% Similarity=0.306 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 525 DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQK 604 (887)
Q Consensus 525 ~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k 604 (887)
....++..|+..+..|...|..+..|+..+..++.++....++-..++.+. ......|+.++..|++...+ ....+
T Consensus 44 ~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-~~~~~~le~el~~lrk~ld~---~~~~r 119 (312)
T PF00038_consen 44 EVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-LAERKDLEEELESLRKDLDE---ETLAR 119 (312)
T ss_dssp --HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred cCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhh---hhhhH
Confidence 345688899999999999999999999999998888765444333344333 34566788888887744432 33445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA 636 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~ 636 (887)
...+.++..|+.||.-++..+-+-++.++...
T Consensus 120 ~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 120 VDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 56777889999999999988888777777655
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=97.42 E-value=0.79 Score=58.48 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 738 NVHEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 738 ~v~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
.+.+.+..++.+.+.+..+.+++..+++.
T Consensus 607 ~~~~~~~~~~~l~~~~~~~~~~l~~~r~~ 635 (880)
T PRK02224 607 EIERLREKREALAELNDERRERLAEKRER 635 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666653
No 41
>PRK11637 AmiB activator; Provisional
Probab=97.40 E-value=0.23 Score=57.97 Aligned_cols=46 Identities=7% Similarity=0.190 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 616 ~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
.++...+.++-+++.+++.+... .+.++.+|+.+..+....|.+++
T Consensus 208 ~~L~~~k~e~~~~l~~L~~~~~~-------~~~~l~~l~~~~~~L~~~I~~l~ 253 (428)
T PRK11637 208 QKLEQARNERKKTLTGLESSLQK-------DQQQLSELRANESRLRDSIARAE 253 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444443333 33344444444444444454444
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=97.34 E-value=0.95 Score=57.67 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=13.5
Q ss_pred CCCeEEEeeccCCCCccccc
Q 002730 79 GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 79 G~N~tv~aYGqTGSGKTyTm 98 (887)
|+|+ -+|++|||||..|
T Consensus 24 g~~~---i~G~nG~GKStil 40 (880)
T PRK03918 24 GINL---IIGQNGSGKSSIL 40 (880)
T ss_pred CcEE---EEcCCCCCHHHHH
Confidence 5543 6899999999876
No 43
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.26 E-value=0.95 Score=55.90 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------Cccchhhh
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN------SDGHTQKM 572 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~------~~~~~~Kl 572 (887)
.+..++..++.+|...+.+... -..|+.+|..++..|+.+...|..++.-+..- .+......
T Consensus 298 tleseiiqlkqkl~dm~~erdt------------dr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e 365 (1195)
T KOG4643|consen 298 TLESEIIQLKQKLDDMRSERDT------------DRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVE 365 (1195)
T ss_pred ChHHHHHHHHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHH
Confidence 4555666666655554443221 22678888888888888888887766554320 01111111
Q ss_pred hhhHHH------HH--HHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002730 573 QDGHTL------KL--KALEAQILELK-----KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQL 628 (887)
Q Consensus 573 ~e~~~~------kl--~~Le~el~~Lk-----kk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L 628 (887)
.++... -| ..+=+.+.+++ ....-|..|.+...+.+.++..|.++|++|..++++|
T Consensus 366 ~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~el 434 (1195)
T KOG4643|consen 366 NEQLTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAEL 434 (1195)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 111110 00 01111122222 2222366666677788999999999999999999985
No 44
>PRK02224 chromosome segregation protein; Provisional
Probab=97.20 E-value=1.3 Score=56.44 Aligned_cols=14 Identities=36% Similarity=0.574 Sum_probs=11.7
Q ss_pred EeeccCCCCccccc
Q 002730 85 LAYGQTGSGKTYTM 98 (887)
Q Consensus 85 ~aYGqTGSGKTyTm 98 (887)
+-+|++|||||..+
T Consensus 27 ~i~G~Ng~GKStil 40 (880)
T PRK02224 27 VIHGVNGSGKSSLL 40 (880)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999998875
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.14 E-value=0.12 Score=63.30 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 002730 378 SSDMQKLRQQLKYLQAELC 396 (887)
Q Consensus 378 ~~~i~~l~~~i~~L~~el~ 396 (887)
...+.+|..+|+.|+.+|.
T Consensus 417 ~~a~~rLE~dvkkLraeLq 435 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQ 435 (697)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456788899999998886
No 46
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.14 E-value=0.32 Score=63.61 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
.+-+|++|||||..|
T Consensus 26 ~~i~G~NGsGKS~ll 40 (1179)
T TIGR02168 26 TGIVGPNGCGKSNIV 40 (1179)
T ss_pred EEEECCCCCChhHHH
Confidence 356799999999988
No 47
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.13 E-value=1.3 Score=54.89 Aligned_cols=204 Identities=21% Similarity=0.206 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHH
Q 002730 501 DKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKL 580 (887)
Q Consensus 501 ~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl 580 (887)
.++-..|..+.+++|+.+..+. +.+.+|+..-+.|+.|+++|+.+..+.....+ ...+..++-.+.+
T Consensus 407 eke~KnLs~k~e~Leeri~ql~------------qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~-rq~~e~e~~~q~l 473 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLL------------QQLAELEDLEKKLQFELEKLLEETSTVTRSLS-RQSLENEELDQLL 473 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhHHHHHHH
Confidence 3344445555555555554433 66788899999999999999988877543332 2233444443433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 002730 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW----------KASREKEL 650 (887)
Q Consensus 581 ~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~----------k~~~~kEi 650 (887)
.....-....-.....+..+-+.-......+.+|.+.+..+|.|.-+...+.....++.... .+..-++|
T Consensus 474 s~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI 553 (1195)
T KOG4643|consen 474 SLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQI 553 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 32222222222222224555555566666677777777777777766666666555554432 22233334
Q ss_pred HHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHH
Q 002730 651 LKLKKEGRK---NEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQK 727 (887)
Q Consensus 651 ~qLkk~~rk---~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~ 727 (887)
.-|+--..+ -+..|..++..|..++. +=.+..+.+|-++.|+.....+..-.. + .-..+...
T Consensus 554 ~~Lk~t~qn~~~LEq~~n~lE~~~~elkk-----~idaL~alrrhke~LE~e~mnQql~~d-------~---~~~kr~ie 618 (1195)
T KOG4643|consen 554 QSLKTTSQNGALLEQNNNDLELIHNELKK-----YIDALNALRRHKEKLEEEIMNQQLFED-------P---IPLKRDIE 618 (1195)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhc-------C---CchhhhHH
Confidence 444331111 11113333333333332 222333667777777765433322111 1 01235678
Q ss_pred HHHHH
Q 002730 728 WLEHE 732 (887)
Q Consensus 728 w~~~e 732 (887)
||..-
T Consensus 619 ~Lr~~ 623 (1195)
T KOG4643|consen 619 WLRRK 623 (1195)
T ss_pred HHHHH
Confidence 98876
No 48
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=2 Score=57.17 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (887)
..+..++..+.++|+..+..+...... ..+.+|+.++..++.+.+.+...+..
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~----------~s~~ele~ei~~~~~el~~l~~~~e~ 847 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLD----------RTVQQVNQEKQEKQHELDTVVSKIEL 847 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc----------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888777766654321 13445555555555555555444443
No 49
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.12 E-value=0.46 Score=56.15 Aligned_cols=131 Identities=27% Similarity=0.353 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 527 EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDG---HTLKLKALEAQILELKKKQESQVELLKQ 603 (887)
Q Consensus 527 ~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~---~~~kl~~Le~el~~Lkkk~~~~~~l~k~ 603 (887)
..++..|-+++..||.++..+-+|||.|..++.+++.+- .++=++++ .-.-+..|-.+=..|-|++-.|..+
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~el--a~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~i--- 475 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKEL--AAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAI--- 475 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---
Confidence 568899999999999999999999999999999875321 11111211 1223444444444555555544444
Q ss_pred HhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHH
Q 002730 604 KHKSDEAAKRLQAEIQ---SIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE-RHKLEALNQRQKMV 677 (887)
Q Consensus 604 k~~~e~~~~~L~~Ei~---~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~e-i~~l~~~~~~q~~v 677 (887)
|++|+..+. .|-+.+-.+|+++..|.++.+. |..-|.+..|...| |.++.+...+|+.-
T Consensus 476 -------IkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~--------il~~Kee~Ek~~~E~I~k~~ae~~rq~~~ 538 (961)
T KOG4673|consen 476 -------IKKLRAKIKEAETLEEKKGELITKLQSEENKLKS--------ILRDKEETEKLLQETIEKHQAELTRQKDY 538 (961)
T ss_pred -------HHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443332 2334444455555555544433 22333333343333 55555555555443
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.12 E-value=1.9 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002730 537 IMELEEEKRIVQQERDRLLAEI 558 (887)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l 558 (887)
+..++.++..++.+...+...+
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~ 281 (1164)
T TIGR02169 260 ISELEKRLEEIEQLLEELNKKI 281 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 51
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.02 E-value=2.3 Score=56.00 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 726 QKWLEH-ELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 726 ~~w~~~-e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
..|+.. ..++...+..++..++.+...+..+..+++.+...
T Consensus 385 ~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~ 426 (1163)
T COG1196 385 LAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEE 426 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 33345567777888888888888888887777654
No 52
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.99 E-value=2.4 Score=55.61 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=11.0
Q ss_pred cceeeCCCCCcchhhhhh
Q 002730 50 FDHVYGNGGSPSSAMFGE 67 (887)
Q Consensus 50 FD~Vf~~~~s~q~~vy~~ 67 (887)
|..|+||.++.-..|++.
T Consensus 25 ~~~i~G~NGsGKS~ll~a 42 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDA 42 (1179)
T ss_pred cEEEECCCCCChhHHHHH
Confidence 456777777655555543
No 53
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.98 E-value=1.7 Score=53.86 Aligned_cols=96 Identities=21% Similarity=0.356 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 002730 574 DGHTLKLKALEAQILELKKKQES-----------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ--EAEQFR 640 (887)
Q Consensus 574 e~~~~kl~~Le~el~~Lkkk~~~-----------~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmke--e~~~~r 640 (887)
+.|++.++.++.++..|++...+ ...|.-...+.+..|+.|.-++...+.-..+|.+++.. ...++.
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~ 547 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELR 547 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhc
Confidence 45666667777777666655444 44555566788889999999999999999988888866 224666
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002730 641 QWKASREKELLKLKKEGRKNEFERHKLEA 669 (887)
Q Consensus 641 ~~k~~~~kEi~qLkk~~rk~~~ei~~l~~ 669 (887)
.--...++++...+.+..+.+.||-+|-.
T Consensus 548 ~r~~~Le~ev~~~~ee~~kaq~EVERLl~ 576 (775)
T PF10174_consen 548 DRIQQLEQEVTRYREESEKAQAEVERLLD 576 (775)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66678888999999999999999888874
No 54
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.86 E-value=3 Score=54.87 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 66 ~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
...+.|++-.+..|+|+-| ||.||||+-.+
T Consensus 12 KSF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~ 41 (1163)
T COG1196 12 KSFADPTEINFSPGFTAIV---GPNGSGKSNIV 41 (1163)
T ss_pred ccCCCCeeeecCCCCeEEE---CCCCCchHHHH
Confidence 3344456666778888855 99999997665
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.80 E-value=1.8 Score=51.26 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 743 RFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 743 ~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
..+-|.|.+++-.|.+.+..|++.
T Consensus 430 qkEKEql~~EkQeL~~yi~~Le~r 453 (546)
T PF07888_consen 430 QKEKEQLQEEKQELLEYIERLEQR 453 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777764
No 56
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.79 E-value=0.63 Score=58.26 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhh
Q 002730 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEV 874 (887)
Q Consensus 795 ~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~~~~~~~~~~~i~s~~eAk~~l~~l~~~~~~~r~~~~~~~~~~~~~e~ 874 (887)
..+|.+|+.+++....++..++....+++.. +.+-+..|+.|-....+.......+...+.+++.
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~---------------l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQRREAEKN---------------LEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677778777777777776666666666542 3344444444444444444444444444444443
No 57
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.69 E-value=4.3 Score=54.21 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=22.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (887)
Q Consensus 600 l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmk 633 (887)
+.....+...+|..|+..+..++..+.++-.++.
T Consensus 848 l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 848 NRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777777766665443
No 58
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.69 E-value=0.27 Score=52.68 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002730 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (887)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~ 613 (887)
+.++..++.++..|+.+...+-..|.++... ..+...-.+.|+.++..|..++.+.-.... ..-+.-.+.+..|..
T Consensus 133 EeR~e~~E~ki~eLE~el~~~~~~lk~lE~~-~~~~~~re~~~e~~i~~L~~~lkeaE~Rae---~aE~~v~~Le~~id~ 208 (237)
T PF00261_consen 133 EERAEAAESKIKELEEELKSVGNNLKSLEAS-EEKASEREDEYEEKIRDLEEKLKEAENRAE---FAERRVKKLEKEIDR 208 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3777888888888888888888888776532 223333446677777777776655532222 222333455667777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002730 614 LQAEIQSIKAQKVQLQNKI 632 (887)
Q Consensus 614 L~~Ei~~mK~~kv~L~kkm 632 (887)
|..+|...|..+..+.+-|
T Consensus 209 le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 209 LEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666655544
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.69 E-value=0.5 Score=58.10 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 727 ~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
.||-++| .-...|+++++|-+......=-.||..||+.
T Consensus 614 triKldL--fsaLg~akrq~ei~~~~~~~~d~ei~~lk~k 651 (697)
T PF09726_consen 614 TRIKLDL--FSALGDAKRQLEIAQGQLRKKDKEIEELKAK 651 (697)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444 7788999999998888887778888888873
No 60
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.65 E-value=1.2 Score=53.78 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 725 LQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 725 ~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
...+..+++||+-.+..-+....+.+.|-..|.+|++.|...
T Consensus 486 Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 486 RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999998753
No 61
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0032 Score=72.36 Aligned_cols=95 Identities=24% Similarity=0.437 Sum_probs=63.7
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchH----HHHHHHHHH
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIP----QVMNALFNK 121 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIp----r~~~~LF~~ 121 (887)
..|....-|.|.+.+. ..+..||+++-.|.-.-++ .|.|||||||||-.-...-..|-+|- -....||+.
T Consensus 3 ~~F~l~s~f~PaGDQP-----~AI~~Lv~gi~~g~~~QtL-LGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E 76 (663)
T COG0556 3 KPFKLHSPFKPAGDQP-----EAIAELVEGIENGLKHQTL-LGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE 76 (663)
T ss_pred CceEeccCCCCCCCcH-----HHHHHHHHHHhcCceeeEE-eeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH
Confidence 4577778898876643 4567888988888766554 59999999999932100111111211 145677877
Q ss_pred HHhhcccceEEEEEeeeeeehhhHh
Q 002730 122 IETLRHQMEFQLHVSFIEILKEEVR 146 (887)
Q Consensus 122 i~~~~~~~~~~v~vS~~EIynE~v~ 146 (887)
....-+...+...|||+..|+-+-|
T Consensus 77 fk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 77 FKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHhCcCcceEEEeeeccccCcccc
Confidence 7776677778889999999875533
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.50 E-value=1.9 Score=51.06 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKA-------QKVQLQNKIKQEAEQFRQWKASRE 647 (887)
Q Consensus 575 ~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~-------~kv~L~kkmkee~~~~r~~k~~~~ 647 (887)
+|...|.+++.++.-++...... .-.....-...-+|..+|..++. -+|.+.-+.+.=.++-.-++...+
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~l---e~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKAL---EDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 45666667777666665332220 00111111123344444444443 456666666666666666777777
Q ss_pred HHHHHHHHhhhhh
Q 002730 648 KELLKLKKEGRKN 660 (887)
Q Consensus 648 kEi~qLkk~~rk~ 660 (887)
.||..++..-++.
T Consensus 222 ~eI~e~~~~~~rd 234 (546)
T KOG0977|consen 222 QEIEEERRKARRD 234 (546)
T ss_pred HHHHHHHHHHhhc
Confidence 7777666655544
No 63
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=3.1 Score=51.77 Aligned_cols=44 Identities=16% Similarity=0.342 Sum_probs=30.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR 640 (887)
Q Consensus 597 ~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r 640 (887)
+...+..+...+-.++.|..|+..|+.-+....+.|..=.++|.
T Consensus 894 ~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~ 937 (1174)
T KOG0933|consen 894 QEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHE 937 (1174)
T ss_pred HHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhcc
Confidence 44555566666777788888888888887777777766555553
No 64
>PRK03918 chromosome segregation protein; Provisional
Probab=96.49 E-value=4.3 Score=51.81 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 532 HFGKKIMELEEEKRIVQQERDRLLAEIEN 560 (887)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (887)
.|.+.+..|+.++..++.+...+...+..
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 332 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKE 332 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666665555543
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.48 E-value=5.6 Score=53.05 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 002730 638 QFRQWKASREKELLKLKKEGRKNEFERH-------KLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNS 710 (887)
Q Consensus 638 ~~r~~k~~~~kEi~qLkk~~rk~~~ei~-------~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~ 710 (887)
+.+..-+...-|+..|++.-.++..... .-+...+++...+...++.+...|+-|-+.++...+.... .
T Consensus 1064 kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~----~ 1139 (1822)
T KOG4674|consen 1064 KLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAV----S 1139 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----c
Confidence 4444445555677777777777766644 3445566667777788888888888888888765433211 0
Q ss_pred CCC-CCCCCCCcHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 711 TGY-TTPTGQSNEKSLQKWLEHELEVSAN-VHEVRFKYEKQSQVQAALADELTILK 764 (887)
Q Consensus 711 ~~~-~~~~~~~~~~~~~~w~~~e~ei~~~-v~e~~~~le~l~~~R~~l~~el~~Lk 764 (887)
+++ +..| ...--.+.++|.+|.+|+-. +.=++..--+|...=+-+.+.+..|.
T Consensus 1140 n~S~~~~g-~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~ 1194 (1822)
T KOG4674|consen 1140 NLSAMLLG-LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQ 1194 (1822)
T ss_pred cccccccc-hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2222 22234789999999999653 22233334444444444445554444
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.46 E-value=5.8 Score=52.96 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CccchhhhhhhH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQDGH---TLKLKALEAQILELKKKQES----QVELLKQK 604 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~---~~~~~~Kl~e~~---~~kl~~Le~el~~Lkkk~~~----~~~l~k~k 604 (887)
.++.-|+..|..+..|.+.|......+... -+...+.+.+++ ..++..++.++..|++...- ..+|....
T Consensus 689 ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~ 768 (1822)
T KOG4674|consen 689 EKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQEL 768 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888777654443322 122334555555 45888999999999855433 66777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE 684 (887)
.+.......|+.-+..|..++-.+-.---+.-.++...-...++++..||++......+++.+.....+|-.=++...++
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 77777777888888888877777666555566667777778888888888888888888888888777776666666666
Q ss_pred HHHHHHHHHH
Q 002730 685 AAIATKRLKE 694 (887)
Q Consensus 685 ~~a~~krlk~ 694 (887)
.......+..
T Consensus 849 ~~~~~~~~~~ 858 (1822)
T KOG4674|consen 849 LESELKSLLT 858 (1822)
T ss_pred HHHHHHHHHH
Confidence 6544444433
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=5 Score=50.86 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHH
Q 002730 502 KELNELNKRLEQKESEMKLFGD--IDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (887)
Q Consensus 502 ~EL~eLnk~Le~KE~~~~~~~~--~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~k 579 (887)
..|..+.+.+...+.+++.-.. .+.+.+-..+...+..++.+|..|+.........|.......+..+..++++.++.
T Consensus 405 E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ 484 (1293)
T KOG0996|consen 405 EKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKL 484 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3344444444444433333211 12233334444555566666655554444444433333222233444444444333
Q ss_pred HHHHHHHHHHHHHHH----HHHHH---HHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 580 LKALEAQILELKKKQ----ESQVE---LLKQKHKSDEAAKRLQAEIQSIKA---QKVQLQNKIKQEAEQFRQWKASREKE 649 (887)
Q Consensus 580 l~~Le~el~~Lkkk~----~~~~~---l~k~k~~~e~~~~~L~~Ei~~mK~---~kv~L~kkmkee~~~~r~~k~~~~kE 649 (887)
-++|...+.++.... -.+++ |++.....-.++..|+.-+..+.. -+...+..++++...........+++
T Consensus 485 ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~ 564 (1293)
T KOG0996|consen 485 EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKE 564 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 333333332222211 11333 333444444555555666666543 34456667777777777777777777
Q ss_pred HHHHHHhhhhh
Q 002730 650 LLKLKKEGRKN 660 (887)
Q Consensus 650 i~qLkk~~rk~ 660 (887)
+.+|+++.+-.
T Consensus 565 l~~~~~e~~~~ 575 (1293)
T KOG0996|consen 565 LPKLRKEERNL 575 (1293)
T ss_pred HHHHHHHHHHH
Confidence 77777766533
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.27 E-value=6.9 Score=51.80 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=49.9
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCc--ccccCC-CCC------CCCcccchHHHHHH
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGK--TYTMGT-GLR------EGFQTGLIPQVMNA 117 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGK--TyTm~g-~~~------~~~~~GiIpr~~~~ 117 (887)
.=.||.-|=|.. +.-.||+-.- -.|--|||++|.- +.|+ .|-+.+ +|. .....++.+.....
T Consensus 55 rksF~~yYLP~~-nSyIIYEY~R-------~~G~~~~vvl~~~-s~g~~V~YRFId~~y~~e~fi~~~~~~~~~~~~~~e 125 (1201)
T PF12128_consen 55 RKSFDDYYLPYS-NSYIIYEYQR-------EDGQLCCVVLSRK-SDGRGVQYRFIDAPYQRELFIDENNGDLVQALSMWE 125 (1201)
T ss_pred hhhHHHHcCCCC-CceEEEeeec-------cCCceeEEEEeec-CCCCceeeeeccCccchhhcccccCccccccccHHH
Confidence 345665555654 3567776521 2476677788744 3343 376643 333 12234567888888
Q ss_pred HHHHHHhhcccceEEEEEeeeeeehhhHh
Q 002730 118 LFNKIETLRHQMEFQLHVSFIEILKEEVR 146 (887)
Q Consensus 118 LF~~i~~~~~~~~~~v~vS~~EIynE~v~ 146 (887)
++..+... +..++=.++ +.=|..-|+
T Consensus 126 ~~r~~~~~--gv~~S~~i~-~~eYR~IIq 151 (1201)
T PF12128_consen 126 LIRELRRK--GVQVSRKIT-TSEYRAIIQ 151 (1201)
T ss_pred HHHHHHhC--CCeeecCcC-HHHHHHHHc
Confidence 88888763 555665566 444544443
No 69
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.27 E-value=4.9 Score=50.05 Aligned_cols=249 Identities=17% Similarity=0.170 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKA---QKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRK 681 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~---~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK 681 (887)
...+.....|+.++..+.. .|-..+-|-..-...+...+....=||..|+...++.+.+|..|+...+.=...|++|
T Consensus 332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666655542 2233333334444444455555555666666666666666666665555555555665
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHH
Q 002730 682 TEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYE-KQSQVQAALADEL 760 (887)
Q Consensus 682 ~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~e~ei~~~v~e~~~~le-~l~~~R~~l~~el 760 (887)
-..+..++.||+. . ..+. +... ....+-.|+..--.++-.+.+.+...+ +..+....+..++
T Consensus 412 d~ql~~~k~Rl~~--------~-~d~~-----~~~~---~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~ 474 (775)
T PF10174_consen 412 DRQLDEEKERLSS--------Q-ADSS-----NEDE---ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKEL 474 (775)
T ss_pred HHHHHHHHHHHhc--------c-cccc-----chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555551 0 0000 0000 012233333333233333333333222 2334445555555
Q ss_pred HHHHhccccccCCCC-----CCCCCC-cccccccCChHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHhhhccccc
Q 002730 761 TILKQVDQLSLNGHS-----PQRGKN-GHSRLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGR 834 (887)
Q Consensus 761 ~~Lk~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~r~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~~~~~~~~ 834 (887)
..|+..-.......+ ....+. ...+.++.. -....|..|+=.+.....-+..|..++.-+..-.. ...+
T Consensus 475 ~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~--K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e---~~~r 549 (775)
T PF10174_consen 475 KELKAKLESLQKELSEKELQLEDAKEEASKLASSQE--KKDSEIERLEIELEKKREKHEKLEKQLEKLRANAE---LRDR 549 (775)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccc--hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHh---hcch
Confidence 555543111110000 000000 001111111 11234455555777777778888877765221111 0112
Q ss_pred cccc--------CCHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhhc
Q 002730 835 WNHL--------RFMGDAKNLLQYMFNVAAETRYTHNLEDLNYRTSEVL 875 (887)
Q Consensus 835 ~~~i--------~s~~eAk~~l~~l~~~~~~~r~~~~~~~~~~~~~e~~ 875 (887)
...+ .-.+.|++=+..|.+.+-..=..-.+||..|.+++..
T Consensus 550 ~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~Leke 598 (775)
T PF10174_consen 550 IQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222 2356778888889888877777778888888888864
No 70
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.17 E-value=3.6 Score=49.54 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=13.0
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
..+-+|++|||||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4456899999999866
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.14 E-value=5.6 Score=49.60 Aligned_cols=31 Identities=13% Similarity=0.100 Sum_probs=20.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 736 SANVHEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 736 ~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
..-+.+.+.++.++..+.+.+..+++.|...
T Consensus 905 ~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k 935 (1174)
T KOG0933|consen 905 ELERKKLEHEVTKLESEKANARKEVEKLLKK 935 (1174)
T ss_pred cchHHHHHhHHHHhhhhHHHHHHHHHHHHHh
Confidence 3445666667777777777777777776653
No 72
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.14 E-value=2.8 Score=46.08 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQ---------EAEQF---RQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~~kv~L~kkmke---------e~~~~---r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~ 672 (887)
+.++--+.+|..-+..|-+-|-.|..++-. ++..+ ...-....-.|..|+.+-.+-...+...++.+.
T Consensus 174 ~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 174 QEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667777777777777777777653 11100 001122333455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 673 RQKMVLQRKTEEAAIATKRLKELLE 697 (887)
Q Consensus 673 ~q~~vLkrK~eE~~a~~krlk~~l~ 697 (887)
-+-..+-.+-.++-..|+||+..|.
T Consensus 254 ~k~~~~~~eek~ireEN~rLqr~L~ 278 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQRKLQ 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544445555667777777776664
No 73
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=7.6 Score=49.33 Aligned_cols=83 Identities=25% Similarity=0.308 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 002730 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQF-------RQWKASREKEL 650 (887)
Q Consensus 578 ~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~-------r~~k~~~~kEi 650 (887)
++++.|++++...+++ -..+-++-++....|.+++.||..+.....++-+.+.+....+ +......++|+
T Consensus 412 ~k~kKleke~ek~~~~---~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRK---KSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHhh---HHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 3444555555444433 4456667788888888888999888888888776665554444 34444445555
Q ss_pred HHHHHhhhhhHHH
Q 002730 651 LKLKKEGRKNEFE 663 (887)
Q Consensus 651 ~qLkk~~rk~~~e 663 (887)
+.+.++.-+...+
T Consensus 489 ~~~~~~~n~~~~e 501 (1293)
T KOG0996|consen 489 MPLLKQVNEARSE 501 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 5544444444443
No 74
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.89 E-value=1.6 Score=48.98 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 577 TLKLKALEAQILELKKKQES-------QVELLK-------QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQW 642 (887)
Q Consensus 577 ~~kl~~Le~el~~Lkkk~~~-------~~~l~k-------~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~ 642 (887)
=+|+..||.+-.-|++|..+ -..+.+ .-...-.-|..|++||.+++..=..-+|.-.++..+++..
T Consensus 207 wKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 207 WKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777644 122221 1122334567788888888887777777777777777777
Q ss_pred HHHHHHHHHHHH
Q 002730 643 KASREKELLKLK 654 (887)
Q Consensus 643 k~~~~kEi~qLk 654 (887)
+....-|..+|.
T Consensus 287 e~~~reen~rlQ 298 (552)
T KOG2129|consen 287 EVDHREENERLQ 298 (552)
T ss_pred HhhHHHHHHHHH
Confidence 777766766654
No 75
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.84 E-value=5.9 Score=47.31 Aligned_cols=89 Identities=18% Similarity=0.334 Sum_probs=47.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHH-HHhhHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 002730 568 HTQKMQDGHTLKLKALEAQILELKKKQES------------QVELLK-QKHKSDEAAKRLQAEIQSIKAQK---VQLQNK 631 (887)
Q Consensus 568 ~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~------------~~~l~k-~k~~~e~~~~~L~~Ei~~mK~~k---v~L~kk 631 (887)
...-++++|-+++.+||+.+.-+-+.... +++|.+ .-...++.|..|..|=..|-++- ...|||
T Consensus 399 ~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkK 478 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKK 478 (961)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34578899999999999888766443332 333333 33344555555555544443322 235555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 632 IKQEAEQFRQWKASREKELLKLKKE 656 (887)
Q Consensus 632 mkee~~~~r~~k~~~~kEi~qLkk~ 656 (887)
+|..-+.......++.+-|..|..+
T Consensus 479 LRAk~ke~etl~~K~ge~i~~L~sE 503 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKGELITKLQSE 503 (961)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHH
Confidence 5554444444444444444444433
No 76
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.74 E-value=6.3 Score=46.91 Aligned_cols=66 Identities=12% Similarity=0.280 Sum_probs=39.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcC------cchHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 002730 496 WQNTMDKELNELNKRLEQKESEMKLFGD------IDTEALRHHFGKK--------------IMELEEEKRIVQQERDRLL 555 (887)
Q Consensus 496 ~q~~l~~EL~eLnk~Le~KE~~~~~~~~------~~~~~lk~~ye~k--------------l~eLe~ei~~lq~Erd~Ll 555 (887)
.+..|..+...++.++++.+..+..+.. +....++..|++. +..=+..|..+|.|.+.|.
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777788888887777766531 2233445555433 2333445567777777777
Q ss_pred HHHHHh
Q 002730 556 AEIENL 561 (887)
Q Consensus 556 ~~l~~~ 561 (887)
.++...
T Consensus 263 ~ql~~~ 268 (629)
T KOG0963|consen 263 EQLAKA 268 (629)
T ss_pred HHHHhh
Confidence 776653
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.74 E-value=6.2 Score=46.84 Aligned_cols=198 Identities=17% Similarity=0.233 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHH----HHH-HHHHHHH--HhhH
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK----QES-QVELLKQ--KHKS 607 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk----~~~-~~~l~k~--k~~~ 607 (887)
..+..|+.++..|.+|...|..+|..+....+ ..--++-++.-+.+.|..+|.-++.- ..+ +....+- ....
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld-~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r 240 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLD-DETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNR 240 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccch
Confidence 56777777777788887777777776554333 23345566667777777777666521 111 2222221 2445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhhhhHHHHHHHHHHHHH
Q 002730 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK--------------KEGRKNEFERHKLEALNQR 673 (887)
Q Consensus 608 e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLk--------------k~~rk~~~ei~~l~~~~~~ 673 (887)
+..-..|..-|++|+++.-.-+++=|++.+. -..++|..++ ++.++....+..|.+
T Consensus 241 ~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~------~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~---- 310 (546)
T KOG0977|consen 241 EYFKNELALAIREIRAQYEAISRQNRKDIES------WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA---- 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh----
Confidence 6666777788888888877777776665443 3333333333 333333333332221
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002730 674 QKMVLQRKTEEA----AIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQ 749 (887)
Q Consensus 674 q~~vLkrK~eE~----~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~e~ei~~~v~e~~~~le~l 749 (887)
|.-++ +++.+++.++--... . . ...-...+.-|......+.-.+..+-.+|+.|
T Consensus 311 -------klselE~~n~~L~~~I~dL~~ql~-e-----------~---~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 311 -------KLSELESRNSALEKRIEDLEYQLD-E-----------D---QRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred -------hhccccccChhHHHHHHHHHhhhh-h-----------h---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 112222222111000 0 0 01113456777777777777778888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 002730 750 SQVQAALADELTILKQ 765 (887)
Q Consensus 750 ~~~R~~l~~el~~Lk~ 765 (887)
+.---.|-.||+.-+.
T Consensus 369 lD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 369 LDTKISLDAEIAAYRK 384 (546)
T ss_pred hchHhHHHhHHHHHHH
Confidence 8888888888887655
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.72 E-value=1.6 Score=46.56 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLK 654 (887)
Q Consensus 575 ~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLk 654 (887)
.++.....++.+|.+++.+...-...+ -..+.+.....|..||+..|.+.+.|...|-+ -.......++++.-|+
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~----l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAE----LMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344555556666666655544433333 45566666777777777777776666554433 2233334555566666
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 655 KEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKEL 695 (887)
Q Consensus 655 k~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~ 695 (887)
.+..+.+..+...+...+-.-..+.++..........|+.-
T Consensus 131 ~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 131 ERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666655555555444444444444444444444444443
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.66 E-value=12 Score=50.14 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 002730 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ------NKIKQEAEQFRQWKASREKELL 651 (887)
Q Consensus 578 ~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~------kkmkee~~~~r~~k~~~~kEi~ 651 (887)
.++..++.++..|+.+.. .+.......+.++..|+..+..+...+--+- ..+......|...-...+.++.
T Consensus 383 eEleelEeeLeeLqeqLa---elqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~ 459 (1486)
T PRK04863 383 ARAEAAEEEVDELKSQLA---DYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELL 459 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443322 2333334444445555555555555554442 4455555555555555555555
Q ss_pred HHHHhhhhhHHHHH
Q 002730 652 KLKKEGRKNEFERH 665 (887)
Q Consensus 652 qLkk~~rk~~~ei~ 665 (887)
.|+.+....+..+.
T Consensus 460 elE~kL~~lea~le 473 (1486)
T PRK04863 460 SLEQKLSVAQAAHS 473 (1486)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555544444433
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.58 E-value=9.2 Score=47.67 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 574 DGHTLKLKALEAQILELKKKQESQV 598 (887)
Q Consensus 574 e~~~~kl~~Le~el~~Lkkk~~~~~ 598 (887)
..+..+|..|+.+..+|=.||+.-+
T Consensus 359 ~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 359 KRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3456677777777777777776633
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.56 E-value=3.3 Score=49.95 Aligned_cols=123 Identities=21% Similarity=0.314 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Q 002730 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHK----- 606 (887)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~----- 606 (887)
.+++.+..+..+...++.+.+.+..++.++... .+.|...|+.++.++..++..........+.-..
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~--------i~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp 288 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMD--------IEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCP 288 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 444555555566666666666666666554321 1456666777777777776665554444332211
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002730 607 --------SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (887)
Q Consensus 607 --------~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~e 663 (887)
....+..|.+.|..++.+.-.+...+.+-.+..+.+. ...+++..++.+.+.....
T Consensus 289 ~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~-~~~~~i~el~~~i~~~~~~ 352 (562)
T PHA02562 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN-EQSKKLLELKNKISTNKQS 352 (562)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 1445555556666665555555555443333333322 2344444444444333333
No 82
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.30 E-value=9.7 Score=46.20 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 002730 502 KELNELNKRLEQKESEMKLFG 522 (887)
Q Consensus 502 ~EL~eLnk~Le~KE~~~~~~~ 522 (887)
.+..++..++..++..+..+.
T Consensus 370 ~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 370 AENEELEEELKLKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555443
No 83
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.98 E-value=9 Score=44.07 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHH
Q 002730 502 KELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLK 581 (887)
Q Consensus 502 ~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~ 581 (887)
+++..+.++|+.++..+.... ++...|+.++..++.+...+.+++..... .. ...++++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~------------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~----~l----~~~~~~I~ 97 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ------------DQRAKLEKQLKSLETEIASLEAQLIETAD----DL----KKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HH----HHHHhhHH
Confidence 445555555555555555432 34445555555555555555555544221 11 12234555
Q ss_pred HHHHHHHHHHHHHHH
Q 002730 582 ALEAQILELKKKQES 596 (887)
Q Consensus 582 ~Le~el~~Lkkk~~~ 596 (887)
+++..+..|.....+
T Consensus 98 ~~~~~l~~l~~q~r~ 112 (420)
T COG4942 98 DLNARLNALEVQERE 112 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544433
No 84
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.73 E-value=14 Score=45.06 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=44.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002730 597 QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKM 676 (887)
Q Consensus 597 ~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~ 676 (887)
.++|+-++++.+++|..|.+-|-.+. +.|.+-+-.+..=+...-.+.+++.+.--..|+....+.+++--+-
T Consensus 381 lqsL~~l~aerqeQidelKn~if~~e--------~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aeg 452 (1265)
T KOG0976|consen 381 LQSLLELQAERQEQIDELKNHIFRLE--------QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEG 452 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh--------hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhh
Confidence 33444455555555555554444332 2222222222222222233444555555555666666655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002730 677 VLQRKTEEAAIATKRLKELL 696 (887)
Q Consensus 677 vLkrK~eE~~a~~krlk~~l 696 (887)
-.+|-++.-+-.-.|++++.
T Consensus 453 srrraIeQcnemv~rir~l~ 472 (1265)
T KOG0976|consen 453 SRRRAIEQCNEMVDRIRALM 472 (1265)
T ss_pred hHhhHHHHHHHHHHHHHHHh
Confidence 55566666555556666544
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.69 E-value=14 Score=44.93 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCcccccccCChHHHHHHHHHHHHHHhhcHHHHHHH
Q 002730 736 SANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSLSPNARMERIASLENMLNMSSKALVEM 815 (887)
Q Consensus 736 ~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~qi~~le~~l~~~~~~~~~~ 815 (887)
.+.+.|....|.+|.-++..|...|..... .. -.++.+...|+-........+..+
T Consensus 492 qarikE~q~kl~~l~~Ekq~l~~qlkq~q~---a~---------------------~~~~~~~s~L~aa~~~ke~irq~i 547 (1118)
T KOG1029|consen 492 QARIKELQEKLQKLAPEKQELNHQLKQKQS---AH---------------------KETTQRKSELEAARRKKELIRQAI 547 (1118)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHhhh---hc---------------------cCcchHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777766543321 10 012333445555555555566667
Q ss_pred HHHhHHHHHHH
Q 002730 816 ASQLSEAEERE 826 (887)
Q Consensus 816 ~~~l~eae~~~ 826 (887)
..+|.+.+.+.
T Consensus 548 kdqldelskE~ 558 (1118)
T KOG1029|consen 548 KDQLDELSKET 558 (1118)
T ss_pred HHHHHHHHHHH
Confidence 77787777664
No 86
>PRK01156 chromosome segregation protein; Provisional
Probab=94.55 E-value=20 Score=46.02 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
..+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457899999999875
No 87
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.49 E-value=17 Score=45.02 Aligned_cols=191 Identities=14% Similarity=0.133 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 002730 633 KQEAEQFRQWKASREKELLKLKK--EGRKNEFERHKLEALNQRQK-MVLQRKTEEAAIATKRLKELLEARKSSARENSVN 709 (887)
Q Consensus 633 kee~~~~r~~k~~~~kEi~qLkk--~~rk~~~ei~~l~~~~~~q~-~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~ 709 (887)
|.|.+....|+.....|++.+-. ++---..||..-.+..-+++ -.|+.+.+|+..-..=||.-.+..
T Consensus 289 R~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeek---------- 358 (1243)
T KOG0971|consen 289 RKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEK---------- 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 44555666666666666654433 12222233444344443443 458899999988888777654421
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCcccccccC
Q 002730 710 STGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQVDQLSLNGHSPQRGKNGHSRLSSL 789 (887)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (887)
|+.+++ .+.-.+++...+-....=.+..+++-.-.-..++-++.+|++.++...+-. ++..++.+ -
T Consensus 359 --G~~~~~--~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL---------~r~kE~Ls-r 424 (1243)
T KOG0971|consen 359 --GSDGQA--ASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEEL---------RRQKERLS-R 424 (1243)
T ss_pred --CCCCcc--cchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHH---------HHHHHHHH-H
Confidence 111211 122345555555555555555566655555666667777776665421110 00000000 0
Q ss_pred ChHHHHHHHHHHHHHHhhcH---HHHHHHHHHhHHHHHHHhhhcccccccccCCHHHHHHHHHHHH
Q 002730 790 SPNARMERIASLENMLNMSS---KALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMF 852 (887)
Q Consensus 790 ~~~~r~~qi~~le~~l~~~~---~~~~~~~~~l~eae~~~~~~~~~~~~~~i~s~~eAk~~l~~l~ 852 (887)
..+.-..+|++|++.+...= +-...+.++-.+.|++.+ -.=+.|..|.++..+=..|.
T Consensus 425 ~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVk-----lLeetv~dlEalee~~EQL~ 485 (1243)
T KOG0971|consen 425 ELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVK-----LLEETVGDLEALEEMNEQLQ 485 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 12344567777777654332 111233445555666652 34455556666555544443
No 88
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.40 E-value=20 Score=45.51 Aligned_cols=91 Identities=24% Similarity=0.211 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 576 HTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ---AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (887)
Q Consensus 576 ~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~---~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~q 652 (887)
+++.|+.++. ..++++..+..+...-.+...++..++ .+|+.-....+.....+++|.+.+++.=..+.+|..+
T Consensus 279 ~~~ql~~~~~---~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~ 355 (1074)
T KOG0250|consen 279 VERQLNNQEE---EIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVND 355 (1074)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 445555555555555555556666666 5555555555666677788888888888888888888
Q ss_pred HHHhhhhhHHHHHHHHH
Q 002730 653 LKKEGRKNEFERHKLEA 669 (887)
Q Consensus 653 Lkk~~rk~~~ei~~l~~ 669 (887)
++.+-+-.++.|.+++.
T Consensus 356 ~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKK 372 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877664
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.17 E-value=6 Score=39.03 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHH
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~ 578 (887)
.+...+..++.....+|.++..+. .|+..|+.++..++.....+...+... ++...-.+.+.+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~------------~K~~~lE~eld~~~~~l~~~k~~lee~-----~~~~~~~E~l~r 80 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQ------------KKNQQLEEELDKLEEQLKEAKEKLEES-----EKRKSNAEQLNR 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHhHHHHHh
Confidence 344455555555555555554433 455555555555555555554444431 122223357888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHH
Q 002730 579 KLKALEAQILELKKKQESQVELLK----QKHKSDEAAKRLQAEIQSIK 622 (887)
Q Consensus 579 kl~~Le~el~~Lkkk~~~~~~l~k----~k~~~e~~~~~L~~Ei~~mK 622 (887)
|++.||.++....++..+-..-++ .=...++++..|..+...+-
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E 128 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWE 128 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 999999999888877766443333 11333555555555444444
No 90
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.15 E-value=16 Score=43.32 Aligned_cols=154 Identities=20% Similarity=0.170 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (887)
Q Consensus 606 ~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~ 685 (887)
..+..+..|+.++..||.+ |.++.===+|-++....+....|+|..+..+..+-..++-.++.+.+.+---+..+--..
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~ 383 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQ-IELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDL 383 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666543 232222234555566666677788888888888888888888888887777777777777
Q ss_pred HHHHHHHHHH-HHHHHhhhhcccCCCCCCCCCCCCCc-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 686 AIATKRLKEL-LEARKSSARENSVNSTGYTTPTGQSN-EKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTIL 763 (887)
Q Consensus 686 ~a~~krlk~~-l~~~k~~~r~~~~~~~~~~~~~~~~~-~~~~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~L 763 (887)
..+.+||+-- .+-.+-..+.... ++ ..+.+.... ...+..|++..-+ .+++++..+.-|+..+..++.-++.+
T Consensus 384 ~~l~~~i~l~~~~~~~n~~~~pe~-~~-~~~~d~k~~V~~~l~el~~ei~~---~~~~~~~~~~tLq~~~~~~~~~i~E~ 458 (581)
T KOG0995|consen 384 NSLIRRIKLGIAENSKNLERNPER-AA-TNGVDLKSYVKPLLKELLDEISE---ELHEAENELETLQEHFSNKASTIEEK 458 (581)
T ss_pred HHHHHHHHHHHHHHhccCCcCCcc-Cc-cccccchhHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777744 2221110111110 11 122222222 2345666664443 45556666666777776666666655
Q ss_pred Hh
Q 002730 764 KQ 765 (887)
Q Consensus 764 k~ 765 (887)
.+
T Consensus 459 ~~ 460 (581)
T KOG0995|consen 459 IQ 460 (581)
T ss_pred HH
Confidence 54
No 91
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.06 E-value=21 Score=44.32 Aligned_cols=45 Identities=38% Similarity=0.396 Sum_probs=30.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 650 LLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEA 698 (887)
Q Consensus 650 i~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~ 698 (887)
...|-|+..+...|+..|+ +++--|+|+++.+.+.---|++..++
T Consensus 398 ~qK~~kelE~k~sE~~eL~----r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELR----RQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666665 46667889999998888888877664
No 92
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.98 E-value=20 Score=43.82 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 575 GHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE 635 (887)
Q Consensus 575 ~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee 635 (887)
+++-.+++++.+|.+|++-.. +.-..+++.-+-|..|.-.++++|..+...++|.
T Consensus 288 qkeelVk~~qeeLd~lkqt~t------~a~gdseqatkylh~enmkltrqkadirc~LlEa 342 (1265)
T KOG0976|consen 288 QKEELVKELQEELDTLKQTRT------RADGDSEQATKYLHLENMKLTRQKADIRCALLEA 342 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666653221 2334566777778888888888888877776654
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.92 E-value=0.029 Score=59.25 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=30.1
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..||||.-+.. .+ +...|.. +..+.+.--..||. +|-||++|+||||-|
T Consensus 3 ~~~tFdnfv~g-~~-N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ES-NELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TT-THHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-Cc-HHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 36999988743 23 4555533 44455542223555 678999999999987
No 94
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.87 E-value=25 Score=44.68 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 663 ERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLE 697 (887)
Q Consensus 663 ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~ 697 (887)
.|..|+..+..-.+-|-+|--+++-+++|+...|.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 47778888888889999999999999999998875
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.81 E-value=9.5 Score=40.80 Aligned_cols=138 Identities=22% Similarity=0.346 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHH
Q 002730 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLK 579 (887)
Q Consensus 500 l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~k 579 (887)
+..++..+|+.+..++-+++.+. .++..++.+|..+..-++.....+... +. .+.
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le------------~qv~~~e~ei~~~r~r~~~~e~kl~~v--------~~-----~~e 90 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLE------------NQVSQLESEIQEIRERIKRAEEKLSAV--------KD-----ERE 90 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcc--------cc-----HHH
Confidence 34455555555555554444322 444445555554444444444444221 11 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002730 580 LKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRK 659 (887)
Q Consensus 580 l~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk 659 (887)
+.+|+.++..++..... .+..+..|..++..+......|..+|...-..+...+..-+-++..++++..
T Consensus 91 ~~aL~~E~~~ak~r~~~----------le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~- 159 (239)
T COG1579 91 LRALNIEIQIAKERINS----------LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ- 159 (239)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56677766665544332 2333334444444444444444444444444445555555555555444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 660 NEFERHKLEALNQRQKMVLQRKTE 683 (887)
Q Consensus 660 ~~~ei~~l~~~~~~q~~vLkrK~e 683 (887)
.+..|...|+.++.
T Consensus 160 ----------~~~~~~~~L~~~l~ 173 (239)
T COG1579 160 ----------ELSSKREELKEKLD 173 (239)
T ss_pred ----------HHHHHHHHHHHhcC
Confidence 23444555556654
No 96
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.72 E-value=16 Score=42.00 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 002730 499 TMDKELNELNKRLEQKESEMK 519 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~ 519 (887)
++.+++.+++..|...+..+.
T Consensus 63 kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 63 KLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 97
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.71 E-value=22 Score=43.40 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 612 KRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKR 691 (887)
Q Consensus 612 ~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~kr 691 (887)
++|+.|+..|.-++-+|-.++. .-|--.....-||.-+.+.-...-.+|..|++.-.-+.+.|.+-+-|-.-++.+
T Consensus 440 ~ql~~eletLn~k~qqls~kl~----Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQ----DVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh----hheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4445555555444444333332 222223334456666777777777788888887777777788888887778888
Q ss_pred HHHH
Q 002730 692 LKEL 695 (887)
Q Consensus 692 lk~~ 695 (887)
||..
T Consensus 516 lkq~ 519 (1118)
T KOG1029|consen 516 LKQK 519 (1118)
T ss_pred HHHh
Confidence 8754
No 98
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.68 E-value=0.035 Score=60.35 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 66 ~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+-.+.|++..+.+--++.|+..|+||||||+||
T Consensus 110 ~LglP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 110 ELGLPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred HcCCCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 344678889999999999999999999999999
No 99
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=11 Score=40.67 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 626 VQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 626 v~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
|.|+...-.....-...+..++.=+++|+-+.-+...++..|+
T Consensus 175 ~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 175 VALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3334444444444444555555555555555555555555555
No 100
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=93.50 E-value=0.082 Score=44.07 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=38.2
Q ss_pred ccccCChHHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHhh
Q 002730 785 RLSSLSPNARMERIASLENMLNMSSKALVEMASQLSEAEERERA 828 (887)
Q Consensus 785 ~~~~~~~~~r~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~~ 828 (887)
++++|+.++|++|. |+++|..+.++...++++|.|++.+.+.
T Consensus 2 lQsaL~~EirakQ~--~~eEL~kvk~~n~~~e~kLqeaE~rn~e 43 (61)
T PF08826_consen 2 LQSALEAEIRAKQA--IQEELTKVKSANLAFESKLQEAEKRNRE 43 (61)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999 9999999999999999999999998653
No 101
>PRK06893 DNA replication initiation factor; Validated
Probab=93.45 E-value=0.042 Score=58.44 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=32.5
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..++||..++.. + .. .+..+...+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~-~-~~-----~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADN-N-LL-----LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCC-h-HH-----HHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 578999999632 2 21 2223334444578888999999999999998
No 102
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=93.42 E-value=12 Score=39.35 Aligned_cols=79 Identities=16% Similarity=0.395 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 002730 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-----QVELLK 602 (887)
Q Consensus 528 ~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~-----~~~l~k 602 (887)
.+-..|..++.+|+...-.-+++...+..+|..+. ..+++++..+.+++.|+.++...+..... +.++++
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-----~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~ 114 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-----EFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQ 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777776766654 44566666677777777776665533222 455555
Q ss_pred HHhhHHHHH
Q 002730 603 QKHKSDEAA 611 (887)
Q Consensus 603 ~k~~~e~~~ 611 (887)
.|...++.+
T Consensus 115 EK~~LEke~ 123 (206)
T PF14988_consen 115 EKARLEKEA 123 (206)
T ss_pred HHHHHHHHH
Confidence 554444433
No 103
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.36 E-value=12 Score=39.26 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHH----------HHHHHHHHHHHHH-HHHHHHHHHH
Q 002730 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL----------KLKALEAQILELK-KKQESQVELL 601 (887)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~----------kl~~Le~el~~Lk-kk~~~~~~l~ 601 (887)
.++.-.....++..+..|+|.+.+.|.++..... .|-..|++ -=..|...+.+.. +-..+..+..
T Consensus 60 ~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs----dl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~ 135 (207)
T PF05010_consen 60 KQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS----DLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQ 135 (207)
T ss_pred HHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667788889999999998888654322 22222221 1111112222211 1112234444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002730 602 KQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (887)
Q Consensus 602 k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~ 669 (887)
.+|...++++..-+.||..+ +....-|+..|+-..||.+..+..|+.
T Consensus 136 aLK~hAeekL~~ANeei~~v---------------------~~~~~~e~~aLqa~lkk~e~~~~SLe~ 182 (207)
T PF05010_consen 136 ALKAHAEEKLEKANEEIAQV---------------------RSKHQAELLALQASLKKEEMKVQSLEE 182 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444 445556677777777777777777764
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.29 E-value=26 Score=42.90 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 002730 528 ALRHHFGKKIMELEEEKRIVQQER---DRLLAEIEN 560 (887)
Q Consensus 528 ~lk~~ye~kl~eLe~ei~~lq~Er---d~Ll~~l~~ 560 (887)
.+....+.+|.+|+..++.++.+. .+|++.+.+
T Consensus 115 ~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqs 150 (617)
T PF15070_consen 115 RLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQS 150 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344455678888888888776553 444444443
No 105
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=18 Score=44.42 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002730 676 MVLQRKTEEAAIATK 690 (887)
Q Consensus 676 ~vLkrK~eE~~a~~k 690 (887)
.|+.-+.++...+.|
T Consensus 917 ~v~~~~~~~~i~alk 931 (970)
T KOG0946|consen 917 LVLLADQKEKIQALK 931 (970)
T ss_pred HHHHhhHHHHHHHHH
Confidence 445555555444333
No 106
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.07 E-value=17 Score=40.22 Aligned_cols=138 Identities=23% Similarity=0.276 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc---CccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002730 537 IMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKR 613 (887)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~---~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~ 613 (887)
+..|+.+++.|+.|...|..+...+..+ .+++.+.|-.+.-+.|.+...+| +.|...-++.-+....
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qi----------a~LseELa~k~Ee~~r 231 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQI----------ASLSEELARKTEENRR 231 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhH----------HHHHHHHHHHHHHHHH
Confidence 3444444455555555554444443321 22333333333333344444444 4444444555566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 614 LQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIA 688 (887)
Q Consensus 614 L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~ 688 (887)
.+.||.++-++-|.|.++.|.=...... ...-+...|.-.+.-..+++.|+.+|.-=..+|..-.||+-..
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEe----L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEE----LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999998876654433 2233344455566666777777765555555555555555433
No 107
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.91 E-value=18 Score=40.03 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002730 676 MVLQRKTEEAAIATKRLKELLEA 698 (887)
Q Consensus 676 ~vLkrK~eE~~a~~krlk~~l~~ 698 (887)
|-|...++.+.+.++.|..-|+.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44788899999999988888774
No 108
>PRK09039 hypothetical protein; Validated
Probab=92.84 E-value=11 Score=42.69 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002730 532 HFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (887)
Q Consensus 532 ~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~ 611 (887)
..+..+.+|+.+...++.+|+.|...+....... ..-+.++..++.++..++. .-...-.++
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~--------~~~~~~~~~l~~~L~~~k~----------~~se~~~~V 139 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQALLAELAGAG--------AAAEGRAGELAQELDSEKQ----------VSARALAQV 139 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--------chHHHHHHHHHHHHHHHHH----------HHHHhhHHH
Confidence 4457788888888888888888877766321100 1112233333333333332 223344567
Q ss_pred HHHHHHHHHHHHH
Q 002730 612 KRLQAEIQSIKAQ 624 (887)
Q Consensus 612 ~~L~~Ei~~mK~~ 624 (887)
..|+.+|..|+.|
T Consensus 140 ~~L~~qI~aLr~Q 152 (343)
T PRK09039 140 ELLNQQIAALRRQ 152 (343)
T ss_pred HHHHHHHHHHHHH
Confidence 8888999999988
No 109
>PRK11281 hypothetical protein; Provisional
Probab=92.66 E-value=16 Score=47.46 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccccccC-Cchhhchhhhhhhh
Q 002730 408 QVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEG-PVSFVKSDGLKRGF 462 (887)
Q Consensus 408 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~aq~~-~~~~~Ki~elk~~L 462 (887)
..+...+..++....+.+..+....+.+..+..+...++.. .....++++++..+
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33666666666666666666666666655443333333322 12233455555555
No 110
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.53 E-value=17 Score=38.90 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 002730 535 KKIMELEEEKRIVQ 548 (887)
Q Consensus 535 ~kl~eLe~ei~~lq 548 (887)
.++..|+.++....
T Consensus 92 eri~~lE~~l~ea~ 105 (237)
T PF00261_consen 92 ERIEELEQQLKEAK 105 (237)
T ss_dssp HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.46 E-value=3.5 Score=39.41 Aligned_cols=88 Identities=24% Similarity=0.374 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ 615 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~ 615 (887)
.+..|..++..++.+|+.+..++-.+-...+ .. .....++..|+.++.+|+.+-.. ++-+--...+.+..|+
T Consensus 31 E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e-~~----~~~~~~~~~L~~el~~l~~ry~t---~LellGEK~E~veEL~ 102 (120)
T PF12325_consen 31 ELASLQEELARLEAERDELREEIVKLMEENE-EL----RALKKEVEELEQELEELQQRYQT---LLELLGEKSEEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcchHHHHHHHH
Confidence 3455666777777777777777766432222 11 22335677888888888776554 4444555667889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002730 616 AEIQSIKAQKVQLQNK 631 (887)
Q Consensus 616 ~Ei~~mK~~kv~L~kk 631 (887)
.+|.+||..--..+..
T Consensus 103 ~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 103 ADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999776555544
No 112
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.29 E-value=22 Score=39.51 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (887)
Q Consensus 727 ~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~ 765 (887)
.-.....++...+......|..|+...-.|-.||+.-+.
T Consensus 266 ~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 266 ELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333344444555666677778888888888888876554
No 113
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=29 Score=40.83 Aligned_cols=169 Identities=18% Similarity=0.199 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH--------
Q 002730 525 DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES-------- 596 (887)
Q Consensus 525 ~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~-------- 596 (887)
.+....++.+......+.+-...+.|.|+++.-+...+...+++.+|+.+-- ...+.=.+.++.|+.|+..
T Consensus 418 e~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele-r~~kdqnkkvaNlkHk~q~Ekkk~aq~ 496 (654)
T KOG4809|consen 418 EFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE-RHMKDQNKKVANLKHKQQLEKKKNAQL 496 (654)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC-chhhhhhhHHhhHHHHHHHHHHHHHHH
Confidence 3445666777777777888888899999998877776666667777765432 3333333444444433222
Q ss_pred HHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---
Q 002730 597 QVELLKQKH--KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN--- 671 (887)
Q Consensus 597 ~~~l~k~k~--~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~--- 671 (887)
-...-+... ....+....+.+|..|.++|-. .-.++.-..--++..+.++--+.+|+-+-||.--++..+++..
T Consensus 497 lee~rrred~~~d~sqhlq~eel~~alektkQe-l~~tkarl~stqqslaEke~HL~nLr~errk~Lee~lemK~~a~k~ 575 (654)
T KOG4809|consen 497 LEEVRRREDSMADNSQHLQIEELMNALEKTKQE-LDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKKPAWKP 575 (654)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHhhC-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 111111000 0111222244555566555533 2344555555666677778888899888888888877766332
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 672 ----------QRQKMVLQRKTEEAAIATKRLKEL 695 (887)
Q Consensus 672 ----------~~q~~vLkrK~eE~~a~~krlk~~ 695 (887)
.+-.+-+.+|+.+-.++.+++|..
T Consensus 576 ~i~~d~~~~~~~~~~~~~~k~~~ev~~~~~~k~~ 609 (654)
T KOG4809|consen 576 GIHADMWRETHKPSNETVTKGSTEVTLAECLKWL 609 (654)
T ss_pred CCCHHHHHHHhhhhhhHHHhhHHHHHHHHHHccc
Confidence 123344555555555555555543
No 114
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=92.20 E-value=10 Score=43.10 Aligned_cols=41 Identities=37% Similarity=0.483 Sum_probs=27.6
Q ss_pred HHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 723 KSLQKWLE--HELEVSANVHEVRFKYEKQSQVQAALADELTILK 764 (887)
Q Consensus 723 ~~~~~w~~--~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk 764 (887)
.+++.|+. +|+|+...-. -+-..+.++.....+++.|.+=+
T Consensus 335 ~aLQ~wLq~T~E~E~q~~~k-krqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 335 LALQKWLQLTHEVEVQYYNK-KRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhh
Confidence 57999997 5666544332 25567778888888888776433
No 115
>PRK06620 hypothetical protein; Validated
Probab=92.03 E-value=0.069 Score=56.29 Aligned_cols=48 Identities=27% Similarity=0.313 Sum_probs=32.3
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCC---eEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN---ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N---~tv~aYGqTGSGKTyTm 98 (887)
..|+||..+.. .+ +...|..+. .+.+. -|+| -.++-||++||||||.+
T Consensus 11 ~~~tfd~Fvvg-~~-N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 11 SKYHPDEFIVS-SS-NDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CCCCchhhEec-cc-HHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHH
Confidence 57899988853 33 555665533 33331 1454 35899999999999999
No 116
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.02 E-value=26 Score=41.63 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-------c
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGD-ID--TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDG-------H 568 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~-~~--~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~-------~ 568 (887)
-++.++.++..+|+..|..+..|.. +. .......+..++..++.+...++.++..+.+.+..+...... .
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~ 244 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAG 244 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcc
Confidence 3566777777777777777766532 11 011112344666777777777776666666655554321000 0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Q 002730 569 TQKMQDGHTLKLKALEAQILELKKKQE-SQVELLKQKHKSDE 609 (887)
Q Consensus 569 ~~Kl~e~~~~kl~~Le~el~~Lkkk~~-~~~~l~k~k~~~e~ 609 (887)
....-...+.++.+++.++..|...-. +|-++..++.+.+.
T Consensus 245 ~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~ 286 (498)
T TIGR03007 245 SSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQ 286 (498)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 011223566789999999998875533 46566555544333
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.62 E-value=11 Score=42.25 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQ 634 (887)
Q Consensus 607 ~e~~~~~L~~Ei~~mK~~kv~L~kkmke 634 (887)
.+.++..+..+|..++.+|..+...|.+
T Consensus 235 l~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 235 LQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666665553
No 118
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.28 E-value=40 Score=40.50 Aligned_cols=27 Identities=22% Similarity=0.130 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 740 HEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 740 ~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
.+.+...-.+...++.+..++++++..
T Consensus 495 ~~~e~~~r~a~~~~~~l~~el~~~~a~ 521 (629)
T KOG0963|consen 495 VELEAQVRLANDKIGFLESELEKLKAD 521 (629)
T ss_pred hhHHHHHhhccCchhHHhhhhhhhhcc
Confidence 334444445566788889999988874
No 119
>PRK09039 hypothetical protein; Validated
Probab=91.23 E-value=20 Score=40.72 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEA 636 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~ 636 (887)
.....++..|..+|+...++||+-+.++|.+-
T Consensus 168 ~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 168 RESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44556667777777777777777666665544
No 120
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.81 E-value=0.12 Score=60.07 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=26.1
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCcccccCC
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g 100 (887)
...+..++..=++.|+.-|+||||||+||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 3456677888899999999999999999943
No 121
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.69 E-value=0.12 Score=62.24 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=33.8
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|+||..+-. .+ +...| ..+..+++..-.+||. ||-||.+|+||||.+
T Consensus 283 ~~~TFDnFvvG-~s-N~~A~-aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL 331 (617)
T PRK14086 283 PKYTFDTFVIG-AS-NRFAH-AAAVAVAEAPAKAYNP-LFIYGESGLGKTHLL 331 (617)
T ss_pred CCCCHhhhcCC-Cc-cHHHH-HHHHHHHhCccccCCc-EEEECCCCCCHHHHH
Confidence 46999976632 22 34444 3344555554457886 789999999999998
No 122
>PRK09087 hypothetical protein; Validated
Probab=90.38 E-value=0.15 Score=54.14 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=31.4
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|+||.-+.. .+ +..+|.. +.....-.|..++-||++||||||.+
T Consensus 16 ~~~~~~~Fi~~-~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 16 PAYGRDDLLVT-ES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCCChhceeec-Cc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHH
Confidence 57899998852 23 4556653 33322223556899999999999999
No 123
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=90.36 E-value=47 Score=39.80 Aligned_cols=134 Identities=25% Similarity=0.253 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEE 684 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE 684 (887)
...+.+|..|..|++.++.+...-...+++... .+.....-++.. ..+.+....++..++....++..-+..|..+
T Consensus 291 ~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~---~~~~~~~~~~~~-e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ 366 (511)
T PF09787_consen 291 QLLERQIEQLRAELQDLEAQLEGEQESFREQPQ---ELSQQLEPELTT-EAELRLYYQELYHYREELSRQKSPLQLKLKE 366 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHhch-HHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444556777777777777765554443333322 223333333333 6667778888888888888999888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 685 AAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVS---ANVHEVRFKYEKQSQVQAALADELT 761 (887)
Q Consensus 685 ~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~e~ei~---~~v~e~~~~le~l~~~R~~l~~el~ 761 (887)
-.....+|+..+..+.. ...|-+-|-.+. .++..=.-.||.+..+|.+|.=.|+
T Consensus 367 ke~E~q~lr~~l~~~~~-----------------------~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlE 423 (511)
T PF09787_consen 367 KESEIQKLRNQLSARAS-----------------------SSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLE 423 (511)
T ss_pred HHHHHHHHHHHHHHHhc-----------------------cCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHH
Confidence 88888888887765431 012332222221 1344446677788888888888888
Q ss_pred HHHh
Q 002730 762 ILKQ 765 (887)
Q Consensus 762 ~Lk~ 765 (887)
.+..
T Consensus 424 rl~~ 427 (511)
T PF09787_consen 424 RLET 427 (511)
T ss_pred HHHH
Confidence 7764
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=90.15 E-value=67 Score=41.25 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=8.0
Q ss_pred eeeCCCCCcchhhhhh
Q 002730 52 HVYGNGGSPSSAMFGE 67 (887)
Q Consensus 52 ~Vf~~~~s~q~~vy~~ 67 (887)
-++|+.++.-..+++.
T Consensus 27 ~I~G~NGsGKSsileA 42 (895)
T PRK01156 27 IITGKNGAGKSSIVDA 42 (895)
T ss_pred EEECCCCCCHHHHHHH
Confidence 4556655544444433
No 125
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.00 E-value=21 Score=44.85 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCc-ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDI-DT--EALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~-~~--~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (887)
-++.++.++.++++..|..+..|... .. .....-.+++|.+|+.++...+.++......+.++.
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888888777777665321 10 000111336788888888888887777766665543
No 126
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.92 E-value=0.16 Score=59.43 Aligned_cols=48 Identities=25% Similarity=0.438 Sum_probs=32.1
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..||||.-+. ..+ +...|..+ ..++.. -..||. +|-||++|+||||.|
T Consensus 100 ~~~tFdnFv~-g~~-n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 100 PDYTFENFVV-GPG-NSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred CCCccccccc-CCc-hHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHH
Confidence 5799998774 222 44555543 333332 123776 899999999999998
No 127
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.81 E-value=11 Score=36.13 Aligned_cols=53 Identities=25% Similarity=0.350 Sum_probs=29.9
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 370 PVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYRSR 434 (887)
Q Consensus 370 p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~ 434 (887)
+.++..|....+.+|..+|..+..|+. .++.+++.++.+-..+..++-.+...
T Consensus 7 s~~~~~~~~~~ve~L~s~lr~~E~E~~------------~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 7 STSSGGPSVQLVERLQSQLRRLEGELA------------SLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777776666554 24455555555555555555444333
No 128
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.81 E-value=71 Score=41.01 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 353 SLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQELHEYR 432 (887)
Q Consensus 353 Tl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~ 432 (887)
+..|=++-+||+.|+..+++. +..+.+..+...+...+.-|... ..+..++ +.|-...+.|+++|....
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g--ay~s~f~~me~kl~~ir~il~~~--svs~~~i-------~~l~~~~~~lr~~l~~~~ 1245 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG--AYASRFLDMEEKLEEIRAILSAP--SVSAEDI-------AQLASATESLRRQLQALT 1245 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch--hhHhHHHHHHHHHHHHHHHhcCC--CccHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 566788999999999988865 56667777777777777766432 2233333 334444445555555555
Q ss_pred HhHHHHHhccc
Q 002730 433 SRRAVVEHCGT 443 (887)
Q Consensus 433 ~~~~~l~~~~~ 443 (887)
.++.+.+..+.
T Consensus 1246 e~L~~~E~~Ls 1256 (1758)
T KOG0994|consen 1246 EDLPQEEETLS 1256 (1758)
T ss_pred hhhhhhhhhhh
Confidence 55555554443
No 129
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.29 E-value=68 Score=40.07 Aligned_cols=148 Identities=20% Similarity=0.207 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002730 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAE 617 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~E 617 (887)
...+..+..+-.|...+..++.+.. ..++..-+.|+.++.+|+.++++-+ + ...+...|.+ +|++|
T Consensus 329 d~~~~~~~~~~~e~~~~~~~l~~~~----~ear~~~~q~~~ql~~le~~~~e~q-------~-~~qe~~~e~e--qLr~e 394 (980)
T KOG0980|consen 329 DPRELQIEQLSREVAQLKAQLENLK----EEARRRIEQYENQLLALEGELQEQQ-------R-EAQENREEQE--QLRNE 394 (980)
T ss_pred ChhhHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHhH-------H-HHHHHHHHHH--HHHHH
Confidence 3444555555555555555555432 1233334455555555555543322 2 2222222222 88888
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 618 IQSIKAQKVQLQNKI--KQEAEQFRQ-WKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKE 694 (887)
Q Consensus 618 i~~mK~~kv~L~kkm--kee~~~~r~-~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~ 694 (887)
...+.+.+-++.+.. .+|.++.-. |+.+.+ ++...=.+.+....++.+-=.+-.+|.-+-..-..++...+.-|-+
T Consensus 395 laql~a~r~q~eka~~~~ee~e~~~l~~e~ry~-klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d 473 (980)
T KOG0980|consen 395 LAQLLASRTQLEKAQVLVEEAENKALAAENRYE-KLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLND 473 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 888888888888877 444443332 322222 2222222233333333333333344444444444556556666666
Q ss_pred HHHHHH
Q 002730 695 LLEARK 700 (887)
Q Consensus 695 ~l~~~k 700 (887)
.++..+
T Consensus 474 ~le~~~ 479 (980)
T KOG0980|consen 474 QLEELQ 479 (980)
T ss_pred HHHHHH
Confidence 666543
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.18 E-value=12 Score=42.88 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=20.4
Q ss_pred EEcCCHHHHHHHHHhcccccccccCCCCC-CCCCcEEEEEEEEEee
Q 002730 193 VAVNTLQEMAACLEQGSLSRATGSTNMNN-QSSRSHAIFTITLEQM 237 (887)
Q Consensus 193 ~~V~s~~e~~~~l~~g~~~R~~~~T~~N~-~SSRSHaIfti~v~q~ 237 (887)
+...+..++..++..=+ ...+|. .+---|++|...|+-.
T Consensus 120 IkFr~q~da~~Fy~efN------Gk~Fn~le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 120 IKFRDQADADTFYEEFN------GKQFNSLEPEVCHLLYVDRVEVT 159 (493)
T ss_pred EEeccchhHHHHHHHcC------CCcCCCCCccceeEEEEEEEEEE
Confidence 55666677766665311 112222 1124588887766644
No 131
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.59 Score=53.34 Aligned_cols=53 Identities=23% Similarity=0.471 Sum_probs=32.2
Q ss_pred hHHHHHhcCC-CeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeee
Q 002730 71 PLVDGLFQGY-NATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEIL 141 (887)
Q Consensus 71 plv~~~l~G~-N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIy 141 (887)
.++..++.|. ...++.||.||||||.|+ +.+++.+........ .+.|-|+++.
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-----------------~~v~~~l~~~~~~~~-~~yINc~~~~ 84 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATV-----------------KFVMEELEESSANVE-VVYINCLELR 84 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHH-----------------HHHHHHHHhhhccCc-eEEEeeeeCC
Confidence 3344455444 334999999999999988 445555544332222 5666666553
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=88.99 E-value=0.25 Score=52.71 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=28.3
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhc---CC-CeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ---GY-NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~---G~-N~tv~aYGqTGSGKTyTm 98 (887)
..|+||.-+.. + +... ...+..... ++ +..++-||++|+||||-+
T Consensus 14 ~~~tfdnF~~~--~-~~~a-----~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 14 DDATFANYYPG--A-NAAA-----LGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CcccccccCcC--C-hHHH-----HHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
Confidence 46899998832 2 2222 233333322 22 246788999999999998
No 133
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.95 E-value=38 Score=36.76 Aligned_cols=10 Identities=50% Similarity=0.630 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 002730 535 KKIMELEEEK 544 (887)
Q Consensus 535 ~kl~eLe~ei 544 (887)
++|.++++.|
T Consensus 87 ~eI~~~~~~I 96 (265)
T COG3883 87 KEIAELKENI 96 (265)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 134
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=88.86 E-value=90 Score=40.96 Aligned_cols=258 Identities=21% Similarity=0.224 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHH
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTL 578 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~ 578 (887)
.+..++.++.+.|..++..+..+. .+...+..|+.+...+.++.+.+...+.-+...++....++-..+++
T Consensus 241 e~e~e~~~~~~~i~ei~~~~~el~---------k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~ 311 (1294)
T KOG0962|consen 241 ELENELGPIEAKIEEIEKSLKELE---------KLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEE 311 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHH
Confidence 344555555555555554444432 12234445555555555555555554443333333333444444444
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Q 002730 579 KLKALEAQILELKKK----QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK--------------------- 633 (887)
Q Consensus 579 kl~~Le~el~~Lkkk----~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmk--------------------- 633 (887)
++.+++.++.++... ..++..+...+.+.+-.+..|+.++...+..+..+=..+.
T Consensus 312 ~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 391 (1294)
T KOG0962|consen 312 RLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVK 391 (1294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHH
Confidence 444444444333322 1445666667777777777777777666666655511111
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHH
Q 002730 634 ---------------QEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALN---QR-QKMVLQRKTEEAAIATKRLKE 694 (887)
Q Consensus 634 ---------------ee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~---~~-q~~vLkrK~eE~~a~~krlk~ 694 (887)
.....+...-..++-.+..+++..+++..++...+... .+ ...-|+.+........-+++.
T Consensus 392 ~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~~~~~e~s~~~~~~ 471 (1294)
T KOG0962|consen 392 KDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKK 471 (1294)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhHHH
Confidence 11222222233334444455555555555543332221 12 222344455555555556666
Q ss_pred HHHHHHhhhhcccCCCCCCCCCCCCC----------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 695 LLEARKSSARENSVNSTGYTTPTGQS----------NEKSLQKWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILK 764 (887)
Q Consensus 695 ~l~~~k~~~r~~~~~~~~~~~~~~~~----------~~~~~~~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk 764 (887)
.+++-+.+.+....-......+.... .-.....-++.++++.-.+.+.+..++-+.........++...+
T Consensus 472 ~~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~~k~~ 551 (1294)
T KOG0962|consen 472 LDERLKEAERLLESAEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDAEKRAKLELLKKKLRKKDAELRKIK 551 (1294)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66554433332211000000000000 01122334445555555566666666666666666666666555
Q ss_pred h
Q 002730 765 Q 765 (887)
Q Consensus 765 ~ 765 (887)
.
T Consensus 552 ~ 552 (1294)
T KOG0962|consen 552 S 552 (1294)
T ss_pred H
Confidence 4
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.84 E-value=33 Score=35.87 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002730 538 MELEEEKRIVQQERDRLLAEIEN 560 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~ 560 (887)
..|+++...++.|||+|...+..
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666777777777766654
No 136
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.76 E-value=0.25 Score=49.41 Aligned_cols=32 Identities=34% Similarity=0.428 Sum_probs=23.2
Q ss_pred hhhhhHHHHHhcC-CCeEEEeeccCCCCccccc
Q 002730 67 ECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 67 ~~v~plv~~~l~G-~N~tv~aYGqTGSGKTyTm 98 (887)
.++..+++.+-.+ .+..++..|+||||||++|
T Consensus 10 ~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~ 42 (184)
T PF04851_consen 10 EAIARIINSLENKKEERRVLLNAPTGSGKTIIA 42 (184)
T ss_dssp HHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCcChhh
Confidence 3455566665555 4566677889999999999
No 137
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.48 E-value=68 Score=39.03 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Q 002730 795 MERIASLENMLNMSSKALVEMASQLSEAEERERALVGRGRWNHLRFMGDAKNLLQYMFNV 854 (887)
Q Consensus 795 ~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~~~~~~~~~~~i~s~~eAk~~l~~l~~~ 854 (887)
...|..|...|....-.+.+....+.++.++-. ..-++...|.+|..++..++..
T Consensus 454 ~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~-----~L~~q~~dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 454 SDEIEALAEELEEKPINMEAVNRLLEEATEDVE-----TLEEETEELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555554433344444445555555432 2334444555555555544443
No 138
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.07 E-value=29 Score=40.09 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAA 563 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~ 563 (887)
+++..|+++.+.|+..--++...+..++.
T Consensus 295 ~~i~~l~ek~r~l~~D~nk~~~~~~~mk~ 323 (622)
T COG5185 295 QKIKTLREKWRALKSDSNKYENYVNAMKQ 323 (622)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 77888889998888877777776655543
No 139
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.01 E-value=0.28 Score=57.60 Aligned_cols=49 Identities=27% Similarity=0.445 Sum_probs=30.7
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|+||.-.. ..+ +...|.. +..+.+.--..||. ++-||++|+||||.+
T Consensus 117 ~~~tfd~fv~-g~~-n~~a~~~-~~~~~~~~~~~~~~-l~l~G~~G~GKThL~ 165 (450)
T PRK00149 117 PKYTFDNFVV-GKS-NRLAHAA-ALAVAENPGKAYNP-LFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCccccccc-CCC-cHHHHHH-HHHHHhCcCccCCe-EEEECCCCCCHHHHH
Confidence 5789987442 222 3444443 34444432234554 778999999999998
No 140
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=88.01 E-value=35 Score=41.87 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCc--c-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDI--D-----TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~--~-----~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (887)
++|++.|+-||.+|.++|...+.-... + ++.|.-.++.++.|.....+.||..-++|+.-+++.+
T Consensus 397 aqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 397 AQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 678899999999999988766543211 1 3445555677888888888888888888887777643
No 141
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.71 E-value=0.16 Score=64.11 Aligned_cols=110 Identities=24% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHH
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ----VELLKQKHKSDEA 610 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~----~~l~k~k~~~e~~ 610 (887)
..+.+|......|+.|.++|..+|........ .. .+....|+.+|.+++....+- ..|.......+..
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~-~l-------~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e 272 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEAESQLS-QL-------QREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHE 272 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH
Confidence 33444444444555555555555544321111 11 123345666666666554442 1222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 611 AKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (887)
Q Consensus 611 ~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~q 652 (887)
+..|+..+..--..|..|.+++..=......|+...+.++..
T Consensus 273 ~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~ 314 (859)
T PF01576_consen 273 LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ 314 (859)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 334444444444566777777777777777788777777665
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.70 E-value=0.3 Score=56.51 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=29.7
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|+||.... .. .+...|.. +..+...--..||. ++-||++|+||||.+
T Consensus 105 ~~~tfd~fi~-g~-~n~~a~~~-~~~~~~~~~~~~n~-l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 105 PKYTFDNFVV-GK-SNRLAHAA-ALAVAENPGKAYNP-LFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCccccccc-CC-cHHHHHHH-HHHHHhCcCccCCe-EEEECCCCCcHHHHH
Confidence 5789998442 22 23444433 33444432122454 678999999999998
No 143
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.47 E-value=74 Score=38.30 Aligned_cols=139 Identities=22% Similarity=0.235 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002730 531 HHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKS 607 (887)
Q Consensus 531 ~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~---~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~ 607 (887)
....+++.+|..+|..+....+............ ...........|...|.+.+.++..|+.....-..|...-...
T Consensus 168 ~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a 247 (522)
T PF05701_consen 168 EENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888888888877777654322211100 0001112335677777777777877777664433333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002730 608 DEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (887)
Q Consensus 608 e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~ 669 (887)
-..+..|+.|+...+..++......+.........=.....|+.+.|....+...++..|..
T Consensus 248 ~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~ 309 (522)
T PF05701_consen 248 SAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRA 309 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766665555411122222222222334444555555555555555444443
No 144
>PRK12377 putative replication protein; Provisional
Probab=87.43 E-value=0.37 Score=51.96 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=32.9
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..+||....... .+..++. .+..++..+..|. ..++-||++|+||||.+
T Consensus 70 ~~tFdnf~~~~~-~~~~a~~-~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa 118 (248)
T PRK12377 70 KCSFANYQVQND-GQRYALS-QAKSIADELMTGC-TNFVFSGKPGTGKNHLA 118 (248)
T ss_pred cCCcCCcccCCh-hHHHHHH-HHHHHHHHHHhcC-CeEEEECCCCCCHHHHH
Confidence 347887554322 2444554 3666777776654 45778999999999998
No 145
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=87.39 E-value=41 Score=35.31 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (887)
Q Consensus 578 ~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi 650 (887)
..|-+.+..+..|+........+.+.+...+..|..|+.|+..+...+...++.|+- +|=..++..++|+
T Consensus 54 ~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~---qfl~EK~~LEke~ 123 (206)
T PF14988_consen 54 DQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES---QFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 445555566666777777777788888888888888888888888888777777764 4555555555554
No 146
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.35 E-value=0.46 Score=54.51 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=19.8
Q ss_pred HHHHHh-cCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLF-QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l-~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++ .+.+..++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333344 345566899999999999988
No 147
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.15 E-value=0.58 Score=57.39 Aligned_cols=93 Identities=25% Similarity=0.415 Sum_probs=56.3
Q ss_pred EEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccch--H--HHHHHHHHHHH
Q 002730 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLI--P--QVMNALFNKIE 123 (887)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiI--p--r~~~~LF~~i~ 123 (887)
|....=|.|.+. |..-+ ..+++++-.|-..-+ .+|.|||||||||..-......+-|| | .....|++.+.
T Consensus 2 f~~~~~~~~~~~-Q~~ai----~~l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~ 75 (655)
T TIGR00631 2 FKLHSPFQPAGD-QPKAI----AKLVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFK 75 (655)
T ss_pred ceeccCCCCChH-HHHHH----HHHHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 444455777654 54444 346666666643323 68999999999994322111112221 1 24566777776
Q ss_pred hhcccceEEEEEeeeeeehhhHh
Q 002730 124 TLRHQMEFQLHVSFIEILKEEVR 146 (887)
Q Consensus 124 ~~~~~~~~~v~vS~~EIynE~v~ 146 (887)
..-+...+...|||+..|.-+.|
T Consensus 76 ~f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 76 EFFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred HhCCCCeEEEEeeecccCCcccc
Confidence 65455558889999999976643
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=86.97 E-value=0.32 Score=55.80 Aligned_cols=49 Identities=33% Similarity=0.499 Sum_probs=30.2
Q ss_pred ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcC-CCeEEEeeccCCCCccccc
Q 002730 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 45 ~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G-~N~tv~aYGqTGSGKTyTm 98 (887)
...||||.-.. +.+ +...|. +..-|.....+ || .||-||++|+||||-|
T Consensus 81 ~~~ytFdnFv~-g~~-N~~A~a--a~~~va~~~g~~~n-plfi~G~~GlGKTHLl 130 (408)
T COG0593 81 NPKYTFDNFVV-GPS-NRLAYA--AAKAVAENPGGAYN-PLFIYGGVGLGKTHLL 130 (408)
T ss_pred CCCCchhheee-CCc-hHHHHH--HHHHHHhccCCcCC-cEEEECCCCCCHHHHH
Confidence 35799998774 333 333332 22222222223 55 5788999999999999
No 149
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.67 E-value=0.34 Score=56.85 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=30.7
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.||||.-+.. .+ +...|. .+..++..--..|| .+|-||++|+||||.|
T Consensus 111 ~~tFdnFv~g-~~-n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl 158 (450)
T PRK14087 111 ENTFENFVIG-SS-NEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLL 158 (450)
T ss_pred ccchhcccCC-Cc-HHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHH
Confidence 5999987742 33 444553 34444432212355 4788999999999998
No 150
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.66 E-value=71 Score=37.28 Aligned_cols=119 Identities=11% Similarity=0.158 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---Cccchhhh
Q 002730 500 MDKELNELNKRLEQKESEMKLFGD-I---DTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN---SDGHTQKM 572 (887)
Q Consensus 500 l~~EL~eLnk~Le~KE~~~~~~~~-~---~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~---~~~~~~Kl 572 (887)
++.++.++..+|+..|..+..|-. + ++..-...-..++.+|+.++...+.++.+....+...... +.-.....
T Consensus 176 l~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPI 255 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChH
Confidence 456667777777777766666532 1 1110001112578888888888888777666655432110 00001112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Q 002730 573 QDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEI 618 (887)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lkkk~~~-~~~l~k~k~~~e~~~~~L~~Ei 618 (887)
-...+.++.+++.++.+|...-.+ |-.+..++.+.+.--..|..|+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~ 302 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEI 302 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 235667788888888887654333 5555544444333333333333
No 151
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.54 E-value=0.4 Score=50.34 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=30.5
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|+||.... + . +...+.. +..+ +..+....|+-||++||||||..
T Consensus 10 ~~~~~~~~~~-~-~-~~~~~~~-l~~~---~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-G-NAELLAA-LRQL---AAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-C-cHHHHHH-HHHH---HhcCCCCeEEEECCCCCCHHHHH
Confidence 4588888773 2 2 3344433 2222 23566778999999999999998
No 152
>PRK06526 transposase; Provisional
Probab=86.53 E-value=0.37 Score=52.18 Aligned_cols=20 Identities=35% Similarity=0.336 Sum_probs=16.4
Q ss_pred cCCCeEEEeeccCCCCcccccC
Q 002730 78 QGYNATVLAYGQTGSGKTYTMG 99 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm~ 99 (887)
.|.| |+.||++|+||||.+.
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAI 116 (254)
T ss_pred cCce--EEEEeCCCCchHHHHH
Confidence 3455 7889999999999983
No 153
>PRK08116 hypothetical protein; Validated
Probab=86.42 E-value=0.36 Score=52.66 Aligned_cols=50 Identities=24% Similarity=0.348 Sum_probs=34.0
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhc--CCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~--G~N~tv~aYGqTGSGKTyTm 98 (887)
..++||.-.. + ..+...|. .+...++++.. +.|..++-||++||||||.+
T Consensus 80 ~~~tFdnf~~-~-~~~~~a~~-~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFLF-D-KGSEKAYK-IARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred HhcchhcccC-C-hHHHHHHH-HHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
Confidence 4688887553 2 22444443 46667776653 34556899999999999998
No 154
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.36 E-value=0.41 Score=51.15 Aligned_cols=47 Identities=15% Similarity=0.378 Sum_probs=29.8
Q ss_pred ceeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 45 THSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 45 ~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
...|+||.-+. . + +...+.. +..++. ..-...++-||++|+||||.+
T Consensus 16 ~~~~~fd~f~~-~-~-n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 16 PDDETFASFYP-G-D-NDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCcCCcccccc-C-c-cHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 35788987774 2 3 3444433 333322 222347899999999999999
No 155
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.28 E-value=0.49 Score=44.75 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=20.5
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..+...+.......|+.+|++|+|||+++
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 334444444434556888999999999877
No 156
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.16 E-value=73 Score=36.98 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002730 616 AEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (887)
Q Consensus 616 ~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~ 660 (887)
.||.+|+.-|-.|=+....-....+..|..++.|.+-|..+-.|+
T Consensus 460 eeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ 504 (527)
T PF15066_consen 460 EEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKH 504 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444455555666666666555544
No 157
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.04 E-value=0.45 Score=51.70 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=21.8
Q ss_pred hhhHHHHHhcCC---CeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~---N~tv~aYGqTGSGKTyTm 98 (887)
..+.+..++... .+.|+..|.||||||++|
T Consensus 112 ~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 112 IPEEIAEFLRSAVRGRGNILISGPTGSGKTTLL 144 (270)
T ss_dssp CHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHH
T ss_pred hHHHHHHHHhhccccceEEEEECCCccccchHH
Confidence 334445555444 677778899999999999
No 158
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.92 E-value=0.23 Score=61.67 Aligned_cols=21 Identities=38% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002730 576 HTLKLKALEAQILELKKKQES 596 (887)
Q Consensus 576 ~~~kl~~Le~el~~Lkkk~~~ 596 (887)
.+.++..|+.+...|+..+..
T Consensus 457 l~erl~rLe~ENk~Lk~~~e~ 477 (713)
T PF05622_consen 457 LRERLLRLEHENKRLKEKQEE 477 (713)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 445666777777777655433
No 159
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=85.82 E-value=0.5 Score=53.52 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=20.3
Q ss_pred HHHHHhc-CCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~-G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++. +....++.||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444443 45668999999999999987
No 160
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.45 E-value=5.6 Score=49.71 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 646 REKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEA 685 (887)
Q Consensus 646 ~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~ 685 (887)
..+|+.+|+++-......+.+|+.-+..+-.-++.=+=.+
T Consensus 604 ~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~~l 643 (722)
T PF05557_consen 604 QEKEIAELKAELASAEKRNQRLKEVFKAKSQEFREAVYSL 643 (722)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777666677777777777777777777665444
No 161
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.19 E-value=0.55 Score=50.51 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=31.4
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
...+||..... ...+..++.. +...++.+..|++ .++-||.+|+||||.+
T Consensus 67 ~~~tFdnf~~~-~~~q~~al~~-a~~~~~~~~~~~~-~~~l~G~~GtGKThLa 116 (244)
T PRK07952 67 QNCSFENYRVE-CEGQMNALSK-ARQYVEEFDGNIA-SFIFSGKPGTGKNHLA 116 (244)
T ss_pred cCCccccccCC-CchHHHHHHH-HHHHHHhhccCCc-eEEEECCCCCCHHHHH
Confidence 45688865432 2234445443 4445555544443 6788999999999998
No 162
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=85.18 E-value=69 Score=35.81 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=53.1
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 002730 607 SDEAAKRLQA-------EIQSIKAQKVQLQNKIKQEAEQFRQWKASREK---ELLKLKKEGRKNEFERHKLEALNQRQKM 676 (887)
Q Consensus 607 ~e~~~~~L~~-------Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~k---Ei~qLkk~~rk~~~ei~~l~~~~~~q~~ 676 (887)
...+...+.. .+..|..+=+.|-.++.--+++|........| =....|++..+.-..|.+|+ +...
T Consensus 186 e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklE----KE~~ 261 (309)
T PF09728_consen 186 EKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLE----KENQ 261 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3444455555 89999999999999999999999998865332 33455666666666666655 4456
Q ss_pred HHHHHHHHHHH
Q 002730 677 VLQRKTEEAAI 687 (887)
Q Consensus 677 vLkrK~eE~~a 687 (887)
.|++|.|....
T Consensus 262 ~~k~k~e~~n~ 272 (309)
T PF09728_consen 262 TWKSKWEKSNK 272 (309)
T ss_pred HHHHHHHHHhH
Confidence 67777776553
No 163
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.05 E-value=52 Score=36.82 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002730 606 KSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (887)
Q Consensus 606 ~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~r 658 (887)
..+.++..+...|...+.+|..+...+.+--......+---.+||..||.+-+
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~ 281 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLK 281 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34555666777777777777777777766655555555555566666655433
No 164
>PRK08727 hypothetical protein; Validated
Probab=84.94 E-value=0.5 Score=50.36 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=26.7
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCC-eEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN-ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N-~tv~aYGqTGSGKTyTm 98 (887)
..|+||.-+.. .+ + .+.. +.++ ..|+. -.|+-||++||||||.+
T Consensus 14 ~~~~f~~f~~~-~~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 14 SDQRFDSYIAA-PD-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CcCChhhccCC-cH-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHH
Confidence 46789987742 22 2 2211 1222 22332 35899999999999998
No 165
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=84.58 E-value=6.4 Score=34.79 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Q 002730 572 MQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEIQSI 621 (887)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lkkk~~~-~~~l~k~k~~~e~~~~~L~~Ei~~m 621 (887)
-+++|+.+++.=-.++..++.+.-+ .....++|+++|+.|.+|+.+|...
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578888877777777777777666 5567778888888888888887653
No 166
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=84.50 E-value=79 Score=35.88 Aligned_cols=81 Identities=26% Similarity=0.372 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHhhhhccCCCC-CCccCCCCcchhhhhhcCCC--CceeeEEEecCCCCCCHHHHHHHHHHHHHhcccccc
Q 002730 293 GLLALGNVISALGDEKKRREG-VHVPYRDSKLTRLLQDSLGG--NSKTVMIACISPADINAEESLNTLKYANRARNIQNK 369 (887)
Q Consensus 293 SL~aLg~VI~aL~~~~~~~~~-~~iPyRdSKLTrLLqdsLgG--ns~t~mI~~vsP~~~~~~ETl~TL~fa~rar~Ikn~ 369 (887)
+.+.||.||..++|.-..+-+ .|. +|.| .-+|.+|++|=...---.-||..|=.+++- ...
T Consensus 8 ~vlvLgGVIA~~gD~ig~kvGkarL-------------rlF~LRPkqTAvlvtvltG~liSA~tLailf~~~~~--lr~- 71 (499)
T COG4372 8 FVLVLGGVIAYAGDTIGKKVGKARL-------------RLFGLRPKQTAVLVTVLTGMLISAATLAILFLLNRN--LRS- 71 (499)
T ss_pred HHHHHHhHHHHHhhHHHhhhhHHHH-------------hHhccCcccceeehhhhhcchhhHHHHHHHHHhhhh--HHh-
Confidence 578899999999983221111 111 1112 346777777766554445666666555431 110
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHh
Q 002730 370 PVVNRDLISSDMQKLRQQLKYLQAELC 396 (887)
Q Consensus 370 p~vn~d~~~~~i~~l~~~i~~L~~el~ 396 (887)
-..++..++.++..++.||.
T Consensus 72 -------gVfqlddi~~qlr~~rtel~ 91 (499)
T COG4372 72 -------GVFQLDDIRPQLRALRTELG 91 (499)
T ss_pred -------hhhhHHHHHHHHHHHHHHHH
Confidence 12345666777777777764
No 167
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.30 E-value=0.5 Score=49.88 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=30.8
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|+||.+++. . ...++. .+..++.. .+.+..|+-||++||||||.+
T Consensus 13 ~~~~~d~f~~~--~-~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAG--E-NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccC--C-cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 57899998842 2 233332 34444432 234557889999999999988
No 168
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=89 Score=36.17 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-----
Q 002730 587 ILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNE----- 661 (887)
Q Consensus 587 l~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~----- 661 (887)
..+|.+.+.-+.+++-.....+.-+.+|+.-|.... ++|-+-..+-...+....-+..+|+++..-.+
T Consensus 271 ~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~-------~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e 343 (521)
T KOG1937|consen 271 NSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELN-------KQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEE 343 (521)
T ss_pred HHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHH
Confidence 333334444445555555555555555554444333 33333333333333444444444544433222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHH
Q 002730 662 -FERHKLEALNQRQKMVLQRKTEEAA---IATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSA 737 (887)
Q Consensus 662 -~ei~~l~~~~~~q~~vLkrK~eE~~---a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~e~ei~~ 737 (887)
+.|.+|+. =|.-+.+|+. .+++.|+..|++.- .....+.+...+.||.-
T Consensus 344 ~~~Iqeleq-------dL~a~~eei~~~eel~~~Lrsele~lp--------------------~dv~rk~ytqrikEi~g 396 (521)
T KOG1937|consen 344 IRRIQELEQ-------DLEAVDEEIESNEELAEKLRSELEKLP--------------------DDVQRKVYTQRIKEIDG 396 (521)
T ss_pred HHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHhcCC--------------------chhHHHHHHHHHHHHHh
Confidence 23444442 2334444444 45566666655321 11235678889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 738 NVHEVRFKYEKQSQVQAALADELTILKQ 765 (887)
Q Consensus 738 ~v~e~~~~le~l~~~R~~l~~el~~Lk~ 765 (887)
.+...+...-+.+.++..|.++++.+-.
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887764
No 169
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.99 E-value=0.7 Score=52.31 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=23.9
Q ss_pred hhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 68 CVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 68 ~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
...|.+..++.--.+.|+..|+||||||+||
T Consensus 109 g~~~~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 109 GLPPVLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CCCHHHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 3445666666544678999999999999999
No 170
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.96 E-value=0.74 Score=49.41 Aligned_cols=43 Identities=35% Similarity=0.476 Sum_probs=32.0
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCcccccC--CCCCCCCcccch
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQTGLI 111 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~--g~~~~~~~~GiI 111 (887)
+.|++..+.----+.|+..|.|||||++||- -++.+....|=|
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHI 159 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHI 159 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHHHHhcccccCCCCce
Confidence 5567788877778889999999999999982 234455556644
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.93 E-value=19 Score=40.36 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 638 QFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 638 ~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
.|.........|...|+.+-+-...++.+|+
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444555556655555666666665
No 172
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=83.93 E-value=1.5e+02 Score=38.62 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=19.6
Q ss_pred HhcCCCeEEEeeccCCCCccccc
Q 002730 76 LFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 76 ~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+-.|+=|-|...--.+|||-|.|
T Consensus 83 IGrGaFGEV~lVr~k~t~~VYAM 105 (1317)
T KOG0612|consen 83 IGRGAFGEVALVRHKSTEKVYAM 105 (1317)
T ss_pred hcccccceeEEEEeeccccchhH
Confidence 33688888888889999999999
No 173
>PRK10436 hypothetical protein; Provisional
Probab=83.86 E-value=0.55 Score=55.14 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=22.9
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++..-++.|+..|+||||||+||
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 355566677899999999999999999
No 174
>PF13245 AAA_19: Part of AAA domain
Probab=83.75 E-value=0.58 Score=40.91 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=17.0
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
|...+. -+..++..|+.|||||+|+
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTL 27 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHH
Confidence 343444 2333445899999999998
No 175
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=83.58 E-value=0.61 Score=55.24 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=23.1
Q ss_pred HHHHHhcCCCeEEEeeccCCCCcccccC
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTMG 99 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm~ 99 (887)
.+..++..-++.|+..|+||||||+||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555667777889999999999999993
No 176
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=83.41 E-value=0.56 Score=56.71 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.3
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++..-++.|+..|+||||||+||
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 456667777899999999999999999
No 177
>PRK08181 transposase; Validated
Probab=82.98 E-value=0.84 Score=49.84 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=16.4
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|.| |+-||++|+||||-+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa 123 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLA 123 (269)
T ss_pred cCce--EEEEecCCCcHHHHH
Confidence 4555 788999999999998
No 178
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.89 E-value=0.5 Score=44.15 Aligned_cols=15 Identities=53% Similarity=0.618 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
++.+|+||||||+++
T Consensus 3 ~~i~~~~G~GKT~~~ 17 (144)
T cd00046 3 VLLAAPTGSGKTLAA 17 (144)
T ss_pred EEEECCCCCchhHHH
Confidence 577999999999999
No 179
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.81 E-value=1.1e+02 Score=36.28 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 002730 378 SSDMQKLRQQLKYLQAELC 396 (887)
Q Consensus 378 ~~~i~~l~~~i~~L~~el~ 396 (887)
...+..|+++|+.|-.+|.
T Consensus 7 eq~ve~lr~eierLT~el~ 25 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELE 25 (772)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4567899999999999886
No 180
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.67 E-value=1.2e+02 Score=36.43 Aligned_cols=89 Identities=20% Similarity=0.164 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhc------cCccchhh
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAE-IENLAA------NSDGHTQK 571 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~-l~~~~~------~~~~~~~K 571 (887)
.|+.|.++|.+.|...+.....+.+. .-.++..|+....+++.....+-.-+.++..- ...... ......-.
T Consensus 336 ~mn~Er~~l~r~l~~i~~~~d~l~k~-vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d 414 (581)
T KOG0995|consen 336 RMNLERNKLKRELNKIQSELDRLSKE-VWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVD 414 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcccccc
Confidence 34555555555555544444443310 01122334444555555555554444444333 111111 11223346
Q ss_pred hhhhHHHHHHHHHHHHH
Q 002730 572 MQDGHTLKLKALEAQIL 588 (887)
Q Consensus 572 l~e~~~~kl~~Le~el~ 588 (887)
++.-.+..|.+|-.+|.
T Consensus 415 ~k~~V~~~l~el~~ei~ 431 (581)
T KOG0995|consen 415 LKSYVKPLLKELLDEIS 431 (581)
T ss_pred chhHhHHHHHHHHHHHH
Confidence 66777777777777664
No 181
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.52 E-value=1.2e+02 Score=36.51 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002730 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (887)
Q Consensus 628 L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~ 669 (887)
-++++..|++.++........|+..+|.+-......+..++.
T Consensus 373 ~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~ 414 (522)
T PF05701_consen 373 ALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEE 414 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888877777777888888887777777776664
No 182
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.51 E-value=80 Score=34.45 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
++..+..++..+..+++.|...+...
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666553
No 183
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.49 E-value=1.3e+02 Score=36.73 Aligned_cols=85 Identities=21% Similarity=0.276 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002730 540 LEEEKRIVQQERDRLLAEIENLAA-NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEI 618 (887)
Q Consensus 540 Le~ei~~lq~Erd~Ll~~l~~~~~-~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei 618 (887)
++.++..++.++...+..+.++.- .......++.++-..-...|++++..-+.-.....++.+.-....+....|..||
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655321 1122334444444444555666665555556666667777777777777788888
Q ss_pred HHHHHH
Q 002730 619 QSIKAQ 624 (887)
Q Consensus 619 ~~mK~~ 624 (887)
..++..
T Consensus 334 ~~l~~s 339 (569)
T PRK04778 334 DRVKQS 339 (569)
T ss_pred HHHHHc
Confidence 877766
No 184
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.40 E-value=1.5e+02 Score=37.41 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002730 410 LKGRIAWLEATNEDLCQELHEYRSRRAVV 438 (887)
Q Consensus 410 l~~~~~~l~~~~~~l~~~l~~~~~~~~~l 438 (887)
...-..+|..+...++.++.+....+...
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777777666655544
No 185
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.35 E-value=54 Score=32.37 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 583 LEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (887)
Q Consensus 583 Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~ 637 (887)
++.++.+++.+..+-......-....++|..|..++......=.....++++-..
T Consensus 54 ~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 54 LEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333355666666666666665444444444443333
No 186
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.27 E-value=18 Score=39.04 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=37.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 570 QKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIK 633 (887)
Q Consensus 570 ~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmk 633 (887)
.+.++.+++|..+||.|+..++ ..+..|+.||..+|+-=++|--|+|
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~-----------------~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQ-----------------QTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999885554 4566788999999988888877765
No 187
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.27 E-value=0.54 Score=48.78 Aligned_cols=18 Identities=50% Similarity=0.695 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
++.|+-.|+||||||+|+
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 367889999999999999
No 188
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.26 E-value=29 Score=40.01 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002730 629 QNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (887)
Q Consensus 629 ~kkmkee~~~~r~~k~~~~kEi~qLkk~~r 658 (887)
..++++.-++......+++..|..|+++.|
T Consensus 416 ~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 416 RGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555566666655554
No 189
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=82.06 E-value=0.74 Score=52.61 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=20.0
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+++.++. .++.|+..|+||||||+||
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 4444443 5667889999999999999
No 190
>PF15294 Leu_zip: Leucine zipper
Probab=82.04 E-value=44 Score=36.59 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002730 671 NQRQKMVLQRKTEEAAIATKRLK 693 (887)
Q Consensus 671 ~~~q~~vLkrK~eE~~a~~krlk 693 (887)
|..=+.+|..|++++..+++||.
T Consensus 255 y~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 255 YRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHhHHHHHhccHHHHHHHHHhc
Confidence 44445678888888888888874
No 191
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.76 E-value=1.4e+02 Score=37.31 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
.....+|......++.+|..|..++...
T Consensus 61 ~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 61 SQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666553
No 192
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=81.65 E-value=1.1 Score=48.00 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=29.4
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCe-EEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNA-TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~-tv~aYGqTGSGKTyTm 98 (887)
...+|...+-+ .+...+... ...|+.|..+ -|+.||..|+|||.++
T Consensus 23 ~~~l~~L~Gie-~Qk~~l~~N-----t~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIE-RQKEALIEN-----TEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHH-HHHHHHHHH-----HHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 45666666643 233333322 3667777755 3677999999998887
No 193
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.51 E-value=51 Score=37.53 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 628 LQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 628 L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
-|++-+++.++.|..-.--+|||..||++.-|.+..|..|+
T Consensus 142 em~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 142 EMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 57788999999999999999999999999999999999998
No 194
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=81.47 E-value=75 Score=33.42 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 586 QILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELL 651 (887)
Q Consensus 586 el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~ 651 (887)
-..+|..-...-+.|.+.-++...-|..|...=..+|..-...+.+++.+-.+|..++.-.+..|.
T Consensus 81 ~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~ 146 (207)
T PF05010_consen 81 AYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLE 146 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445554555555677777777778877778888999999999998887665554
No 195
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=81.46 E-value=1.1e+02 Score=35.16 Aligned_cols=97 Identities=23% Similarity=0.344 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002730 535 KKIMELEEEKRIVQQERDRLL------AEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSD 608 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll------~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e 608 (887)
++|..|+++++-||+..|+=. +.+......--|... .-..-+.-|..++..|+.. |.+.+....
T Consensus 208 KrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~----~~~~hi~~l~~EveRlrt~------l~~Aqk~~~ 277 (552)
T KOG2129|consen 208 KRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAA----AEKLHIDKLQAEVERLRTY------LSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHH----HHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 788888888888888776532 223222111111111 1123455567777777643 334455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (887)
Q Consensus 609 ~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~ 641 (887)
++..+|.+|=..|...-.+|+++++.|.++...
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL~~e~erRea 310 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKLINELERREA 310 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888888889988888877643
No 196
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=81.43 E-value=0.79 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.4
Q ss_pred HhcCCCeEEEeeccCCCCccccc
Q 002730 76 LFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 76 ~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
++.--++.|+..|+||||||+||
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHH
Confidence 44445789999999999999999
No 197
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=81.36 E-value=0.57 Score=52.00 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=21.0
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..++..++.+ ...|+..|+||||||++|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455555553 456788999999999998
No 198
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=81.27 E-value=20 Score=37.18 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002730 576 HTLKLKALEAQILELKKKQES 596 (887)
Q Consensus 576 ~~~kl~~Le~el~~Lkkk~~~ 596 (887)
...++..+..++.++.+.+++
T Consensus 72 le~~~~~l~~ELael~r~~~e 92 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGE 92 (194)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 345556666666666655555
No 199
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.05 E-value=1.8e+02 Score=37.47 Aligned_cols=128 Identities=18% Similarity=0.269 Sum_probs=77.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhH
Q 002730 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (887)
Q Consensus 497 q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~ 576 (887)
+.....++.++..++...+-.+.-..+.|+..--...++.+..++.++..+++..+.....+.++ .++...-
T Consensus 776 ~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~--------~~~e~k~ 847 (1141)
T KOG0018|consen 776 QQEFAKKRLEFENQKAKLENQLDFEKQKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI--------EELEKKN 847 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheecccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH--------HHHHHHH
Confidence 56667777777777777776666544444433333344666667777776666666666665554 1111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQE 635 (887)
Q Consensus 577 ~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee 635 (887)
..+...++.++.+ ....-.++.+...+.+..+..+.+.|.+....+..|+++-+-+
T Consensus 848 k~~~~~~~~e~~e---~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl~ 903 (1141)
T KOG0018|consen 848 KSKFEKKEDEINE---VKKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKLE 903 (1141)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 2233334444433 3334456677777778888888888888888888888776543
No 200
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=80.63 E-value=1e+02 Score=34.57 Aligned_cols=55 Identities=22% Similarity=0.257 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002730 534 GKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (887)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~ 596 (887)
+.-...|+.....|+.+...|...+..+ ..+....+.+...|+.++..|+....+
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l--------~~~~~~l~~~~~~L~~e~~~Lk~~~~e 202 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQL--------DELLPKLRERKAELEEELENLKQLVEE 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555566666666666665554432 344455566778888888888876665
No 201
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.61 E-value=0.56 Score=44.43 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=13.2
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
+.+++.||++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356889999999999988
No 202
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=80.59 E-value=1 Score=52.72 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=31.2
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHH--hcC--CCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGL--FQG--YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~--l~G--~N~tv~aYGqTGSGKTyTm 98 (887)
..||||.-+.. .+ +...| ..+..+.... ..| ||. +|-||++|+||||.+
T Consensus 106 ~~~tFdnFv~g-~~-N~~a~-~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 106 PLMTFANFLVT-PE-NDLPH-RILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred ccccccceeeC-Cc-HHHHH-HHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 57999987742 23 44444 3344444432 223 564 567999999999998
No 203
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.55 E-value=61 Score=40.49 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 672 QRQKMVLQRKTEEAAIATKRLKEL 695 (887)
Q Consensus 672 ~~q~~vLkrK~eE~~a~~krlk~~ 695 (887)
+.=+.+|+..++++..+.+.+|.+
T Consensus 688 ~~I~~iL~~~~~~I~~~v~~ik~i 711 (717)
T PF10168_consen 688 RTIKEILKQQGEEIDELVKQIKNI 711 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333688999999988888887765
No 204
>PF14992 TMCO5: TMCO5 family
Probab=80.52 E-value=58 Score=35.67 Aligned_cols=114 Identities=19% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQ---DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAA 611 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~---e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~ 611 (887)
.-+.+|+.+...|+++-+-+-..+..+..+.+.+..++. ..-...++..+..++.+..-.. ..+.++
T Consensus 63 ~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~----------~qE~ei 132 (280)
T PF14992_consen 63 TDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCA----------SQEKEI 132 (280)
T ss_pred HHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHH----------HHHHHH
Confidence 446777777788887777775555554444333333332 2223445555544333332222 223333
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002730 612 KRLQAE---IQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFE 663 (887)
Q Consensus 612 ~~L~~E---i~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~e 663 (887)
.++..+ +..+-.-...-++++|+.. +. ...+||+..|.++-++.+..
T Consensus 133 ~kve~d~~~v~~l~eDq~~~i~klkE~L---~r--mE~ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 133 AKVEDDYQQVHQLCEDQANEIKKLKEKL---RR--MEEEKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHhch
Confidence 333222 3333344555556666544 22 22267777766666555443
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.32 E-value=0.7 Score=43.10 Aligned_cols=17 Identities=41% Similarity=0.567 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..++-+|++|||||+++
T Consensus 3 ~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 3 EVILIVGPPGSGKTTLA 19 (148)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45788999999999998
No 206
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.08 E-value=1.3e+02 Score=35.17 Aligned_cols=62 Identities=24% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 607 ~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
.++.+..++..|..+-..=-.+=-++-+-..+|...+...++|.-.-+-+..|.++++..|.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666665554444455555566667777777777777776666666666666554
No 207
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=80.06 E-value=62 Score=33.14 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002730 610 AAKRLQAEIQSIKAQKVQLQN 630 (887)
Q Consensus 610 ~~~~L~~Ei~~mK~~kv~L~k 630 (887)
.+..+..++.++...+-.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~ 179 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEE 179 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333
No 208
>PRK06835 DNA replication protein DnaC; Validated
Probab=79.99 E-value=0.95 Score=50.89 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=22.5
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+...|+.+-.+. ..|+-||+||+||||.+
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa 200 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLS 200 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHH
Confidence 445677766554 55889999999999988
No 209
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=79.56 E-value=0.99 Score=44.63 Aligned_cols=25 Identities=40% Similarity=0.619 Sum_probs=19.5
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
++..+..|.| ++..|+||||||+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~ 31 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAY 31 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHH
Confidence 3444556766 678899999999988
No 210
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=79.48 E-value=0.77 Score=48.46 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
+..+|.||||||||+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999999
No 211
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.44 E-value=83 Score=32.73 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 572 MQDGHTLKLKALEAQILELKKKQES---QVELLK-QKHKSDEAAKRL---QAEIQSIKAQKVQLQNKIKQEAEQFRQWKA 644 (887)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lkkk~~~---~~~l~k-~k~~~e~~~~~L---~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~ 644 (887)
+-..+..++++|..+|.+|+.+..+ -.++++ ++...+..+..+ ++++-.+=.++...++-+|+...+......
T Consensus 6 vlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r 85 (194)
T PF15619_consen 6 VLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQER 85 (194)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777765554 223333 455566666666 788888889999999999999999888888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 002730 645 SREKELLKLKKEGRKNEFERHKLEALN 671 (887)
Q Consensus 645 ~~~kEi~qLkk~~rk~~~ei~~l~~~~ 671 (887)
..++.+-....+..+...++.+|+...
T Consensus 86 ~~~~klk~~~~el~k~~~~l~~L~~L~ 112 (194)
T PF15619_consen 86 ELERKLKDKDEELLKTKDELKHLKKLS 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777777777766543
No 212
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=79.24 E-value=1.7e+02 Score=36.20 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
+++-||+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4557899999999988
No 213
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.21 E-value=0.61 Score=59.06 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 002730 598 VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERH 665 (887)
Q Consensus 598 ~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~ 665 (887)
+.|.+++...+.........|..|++.+..-+-.|.++.+.....+...+|+-..|..+..--..++.
T Consensus 102 ~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~ 169 (859)
T PF01576_consen 102 AELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLD 169 (859)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444555555555555666666776666666666666666666666666665555555444444433
No 214
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.95 E-value=74 Score=39.80 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=12.8
Q ss_pred eeeeecCCCccccccCCCcc
Q 002730 263 LHLVDLAGSERAKRTGSDGL 282 (887)
Q Consensus 263 l~lVDLAGSEr~~~t~~~g~ 282 (887)
-.+.|-...+|.-.+.+.|.
T Consensus 370 ~L~~Dp~~~~ryy~~H~~Gv 389 (717)
T PF10168_consen 370 RLHRDPLNPDRYYCYHNAGV 389 (717)
T ss_pred EEEecCCCCceEEEEecCcc
Confidence 34578777777765555553
No 215
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=78.81 E-value=1.2 Score=48.60 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=20.8
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++..-.+.|+-.|+||||||+||
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 345555555667888899999999999
No 216
>PRK06921 hypothetical protein; Provisional
Probab=78.75 E-value=1.3 Score=48.41 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=20.7
Q ss_pred hhhHHHHHhc---CCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQ---GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~---G~N~tv~aYGqTGSGKTyTm 98 (887)
+...++++-. +....|+-||++|+||||.+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa 134 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLL 134 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHH
Confidence 3445555432 23446788999999999998
No 217
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.56 E-value=3.9 Score=51.15 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=20.5
Q ss_pred hHHHHHhc--CCCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQ--GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~--G~N~tv~aYGqTGSGKTyTm 98 (887)
.++..++. |-+.++|.||+||+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34444443 44567889999999999998
No 218
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.32 E-value=68 Score=31.07 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002730 582 ALEAQILELKKKQESQVELLK-QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKN 660 (887)
Q Consensus 582 ~Le~el~~Lkkk~~~~~~l~k-~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~ 660 (887)
.++.++..++.....|..+.+ .+.+++..+...-..| +.+.++|++....+. +|.+|+.+-...
T Consensus 21 ~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~--------~~L~~lr~e~~~~~~-------~~~~l~~~~~~a 85 (132)
T PF07926_consen 21 DAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDI--------KELQQLREELQELQQ-------EINELKAEAESA 85 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 334444444444444444333 4444555444444443 444555666555554 444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 002730 661 EFERHKLEALNQRQKMVL-------QRKTEEAAIATKRLKEL 695 (887)
Q Consensus 661 ~~ei~~l~~~~~~q~~vL-------krK~eE~~a~~krlk~~ 695 (887)
...+...+..-.-|+..| +++++++..-|+=|=+.
T Consensus 86 ~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Q 127 (132)
T PF07926_consen 86 KAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQ 127 (132)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 44444444444444333
No 219
>PF12846 AAA_10: AAA-like domain
Probab=78.29 E-value=0.84 Score=49.59 Aligned_cols=18 Identities=50% Similarity=0.709 Sum_probs=15.9
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
|..++..|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 556788999999999998
No 220
>PRK08939 primosomal protein DnaI; Reviewed
Probab=78.15 E-value=1.2 Score=49.54 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=29.9
Q ss_pred EEcceeeCCCCCcchhhhhhhhhhHHHHHhcC-CCeEEEeeccCCCCcccccC
Q 002730 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTMG 99 (887)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G-~N~tv~aYGqTGSGKTyTm~ 99 (887)
.+||.+-... .....++.. +...++....| ....++-||++|+||||.+.
T Consensus 124 atf~~~~~~~-~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDD-RDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCC-hHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 4565543222 123445543 34555555443 23468899999999999993
No 221
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=77.84 E-value=1.2 Score=46.31 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|..++.+.+..++..|+.||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 445555555445556899999999998
No 222
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.71 E-value=1.5 Score=47.58 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=24.2
Q ss_pred chhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 61 SSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 61 q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+...|.. +..++..+-+|.| ++-||++|+||||-.
T Consensus 88 ~~~~l~~-~~~~~~~~~~~~n--l~l~G~~G~GKThLa 122 (254)
T COG1484 88 DKKALED-LASLVEFFERGEN--LVLLGPPGVGKTHLA 122 (254)
T ss_pred hHHHHHH-HHHHHHHhccCCc--EEEECCCCCcHHHHH
Confidence 4455543 5566666665555 456999999999998
No 223
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=77.63 E-value=26 Score=38.79 Aligned_cols=111 Identities=23% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHH
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHT 577 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~ 577 (887)
..+..-+-..++.|..++..+.... .+...++.+...++.........+........+....|.+.-+
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~------------~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQ------------AKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002730 578 LKLKALEAQILEL-KKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (887)
Q Consensus 578 ~kl~~Le~el~~L-kkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK 622 (887)
..-..+..+...+ ..+..++.+++ ++...+++..|+.||+.|+
T Consensus 254 ~e~~~~~~e~e~~l~~k~~eq~~~l--~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 254 EEREQLLQEQERLLEQKLQEQEELL--KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcC
No 224
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.47 E-value=1.1e+02 Score=33.15 Aligned_cols=169 Identities=22% Similarity=0.279 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 577 TLKLKALEAQILELKKKQES-QVELLKQK---HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLK 652 (887)
Q Consensus 577 ~~kl~~Le~el~~Lkkk~~~-~~~l~k~k---~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~q 652 (887)
-+|+++||.++..|++.... |-.|--+. +|.-+++..=..|+..||+---.|+-- -+..++.| ..
T Consensus 17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~-c~~lek~r----------qK 85 (307)
T PF10481_consen 17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES-CENLEKTR----------QK 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH-HHHHHHHH----------HH
Confidence 46899999999999865443 32222222 222222333334444444333222211 11112211 12
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCC-CCCcHHHHHHHHHH
Q 002730 653 LKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPT-GQSNEKSLQKWLEH 731 (887)
Q Consensus 653 Lkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~-~~~~~~~~~~w~~~ 731 (887)
|--+..-++..+.-|+- |-+-.|.-+|.+....+|+|.-|++-+.+.......-.....|- .....-.-.+|
T Consensus 86 lshdlq~Ke~qv~~lEg----Ql~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~--- 158 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEG----QLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQY--- 158 (307)
T ss_pred hhHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhh---
Confidence 22222233344444443 33445667788888999999999865543221111000001110 00000000001
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 732 ELEVSANVHEVRFKYEKQSQVQAALADELTILKQ 765 (887)
Q Consensus 732 e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~ 765 (887)
-.--...+++..|..-.++|+.|..|+..|.-
T Consensus 159 --~~~sk~e~L~ekynkeveerkrle~e~k~lq~ 190 (307)
T PF10481_consen 159 --YSDSKYEELQEKYNKEVEERKRLEAEVKALQA 190 (307)
T ss_pred --hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 01123567788899999999999999998874
No 225
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=77.24 E-value=2.5e+02 Score=36.99 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002730 408 QVLKGRIAWLEATNEDLCQELHEYRSRR 435 (887)
Q Consensus 408 ~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 435 (887)
..+.+++........+++..+....++.
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4455666655555666666666555554
No 226
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=77.02 E-value=2e+02 Score=35.78 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHh
Q 002730 383 KLRQQLKYLQAELC 396 (887)
Q Consensus 383 ~l~~~i~~L~~el~ 396 (887)
.|..+++.|+.++.
T Consensus 433 ~Le~elekLk~eil 446 (762)
T PLN03229 433 ELEGEVEKLKEQIL 446 (762)
T ss_pred cHHHHHHHHHHHHH
Confidence 46667777777776
No 227
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.93 E-value=24 Score=42.14 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ 597 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~ 597 (887)
.+.+|+.++..+++|+++|..++..+..... .+....+++..++..|..|+++..+.
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555432111 11223456777777777777766653
No 228
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.83 E-value=2.1e+02 Score=36.00 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 645 SREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRL 692 (887)
Q Consensus 645 ~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krl 692 (887)
..+++...|-....+.+.+-..++.+++-|..+|..=-.|...+..++
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~ 510 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIEL 510 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444433333333333333
No 229
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.43 E-value=1.6e+02 Score=34.34 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=16.4
Q ss_pred CCCceeeEEEecCCCCCCHHHHHHHH
Q 002730 332 GGNSKTVMIACISPADINAEESLNTL 357 (887)
Q Consensus 332 gGns~t~mI~~vsP~~~~~~ETl~TL 357 (887)
.+++..+-|..-+|++.-...-++++
T Consensus 128 ~~~s~ii~is~~~~dp~~A~~i~n~~ 153 (444)
T TIGR03017 128 SRESSVISIEFSGVDPRFAATVANAF 153 (444)
T ss_pred cCCceEEEEEEeCCCHHHHHHHHHHH
Confidence 45667777777777665555555544
No 230
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=76.27 E-value=1.8 Score=52.74 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=16.1
Q ss_pred CCeEEEeeccCCCCccccc
Q 002730 80 YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm 98 (887)
-|-.|+.+|+||||||+-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3557888999999999887
No 231
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=76.24 E-value=69 Score=32.77 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 002730 503 ELNELNKRLEQKE 515 (887)
Q Consensus 503 EL~eLnk~Le~KE 515 (887)
++.+++..+...+
T Consensus 82 e~~~~~~~l~~l~ 94 (191)
T PF04156_consen 82 ELSELQQQLQQLQ 94 (191)
T ss_pred hHHhHHHHHHHHH
Confidence 3344444443333
No 232
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=76.14 E-value=5.1 Score=43.02 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=14.3
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|...|++|+|||.++
T Consensus 28 ~i~vvG~~~~GKSt~l 43 (240)
T smart00053 28 QIAVVGGQSAGKSSVL 43 (240)
T ss_pred eEEEEcCCCccHHHHH
Confidence 3778899999999998
No 233
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=75.37 E-value=1e+02 Score=32.94 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELL 601 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~ 601 (887)
+|.+|..+...+++-+.++..+++.+.. -++.|.++++++..|......|.+-+
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~------------ee~~L~e~~kE~~~L~~Er~~h~eeL 55 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLEN------------EEKCLEEYRKEMEELLQERMAHVEEL 55 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777766431 12556666666666655544444333
No 234
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.36 E-value=41 Score=36.35 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAAN 564 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~ 564 (887)
.||.+||.....|.+|+..-.-+|.++.+.
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAa 47 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAA 47 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 678888888888888888888788776543
No 235
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.28 E-value=2.2e+02 Score=35.48 Aligned_cols=160 Identities=19% Similarity=0.274 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH------------------
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQ------------------ 597 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~------------------ 597 (887)
.|..|+++...++.|+..|...|......-+.....+. +...++..|-.++..|++-+..+
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als-~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~ 344 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALS-EQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG 344 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence 45556666666666666666665543322111111222 22345666666666666522110
Q ss_pred ---------HHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002730 598 ---------VELLKQ-KHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKL 667 (887)
Q Consensus 598 ---------~~l~k~-k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l 667 (887)
-+++.. -......+..|+.||..+|.....+..+-+++..+.+..-+.....+..+.+..+..+-.+..|
T Consensus 345 ~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~L 424 (717)
T PF09730_consen 345 DYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISEL 424 (717)
T ss_pred chhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 011111 1234456778899999999988888888888888888888888888888888777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 668 EALNQRQKMVLQRKTEEAAIATKRLKELL 696 (887)
Q Consensus 668 ~~~~~~q~~vLkrK~eE~~a~~krlk~~l 696 (887)
+..-..=..+--.....++++..-|..+-
T Consensus 425 E~ELr~l~~~A~E~q~~LnsAQDELvtfS 453 (717)
T PF09730_consen 425 EKELRALSKLAGESQGSLNSAQDELVTFS 453 (717)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 87666555555555555666665555543
No 236
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.27 E-value=21 Score=37.04 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIEN 560 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (887)
.+..++.+.+.|+.|.++|..-+-.
T Consensus 159 ~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 159 QLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888776543
No 237
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.05 E-value=1.3 Score=45.93 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=21.5
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..+...+-.|.+.+++.||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44445455677889999999999999988
No 238
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.99 E-value=1.1 Score=50.14 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.0
Q ss_pred hHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.++..++.+ ...|+..|.||||||++|
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 444444443 234778899999999999
No 239
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=74.93 E-value=90 Score=30.78 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 571 KMQDGHTLKLKALEAQILELK----KKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASR 646 (887)
Q Consensus 571 Kl~e~~~~kl~~Le~el~~Lk----kk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~ 646 (887)
...+........|...+..+. .......+|...-+..+..+..+.+....++.+-..+..++|.+.+.....+..-
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHH
Q 002730 647 EKELLKLKKEGRKNEFERHKLEAL 670 (887)
Q Consensus 647 ~kEi~qLkk~~rk~~~ei~~l~~~ 670 (887)
.-=-.|..-+.||++.|+.+|+..
T Consensus 125 ~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 125 QQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 240
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.88 E-value=1.5 Score=49.03 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=19.7
Q ss_pred hHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.++..++.+ ...|+..|.||||||++|
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 455555554 355666799999999887
No 241
>PF13479 AAA_24: AAA domain
Probab=74.41 E-value=1.4 Score=46.17 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=16.6
Q ss_pred CeEEEeeccCCCCcccccCC
Q 002730 81 NATVLAYGQTGSGKTYTMGT 100 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm~g 100 (887)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45688999999999998743
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=74.29 E-value=1.9 Score=44.08 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
-.++-||++|+||||..
T Consensus 48 ~~l~l~G~~G~GKThLa 64 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLA 64 (178)
T ss_dssp -EEEEEESTTSSHHHHH
T ss_pred eEEEEEhhHhHHHHHHH
Confidence 45888999999999998
No 243
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=74.16 E-value=1.2 Score=46.25 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.4
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+-.|+||+|||+|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4677899999999999
No 244
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.09 E-value=2e+02 Score=34.31 Aligned_cols=131 Identities=20% Similarity=0.337 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----Cccc---
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGDIDTEAL--RHHFGKKIMELEEEKRIVQQERDRLLAEIENLAAN-----SDGH--- 568 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~l--k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~-----~~~~--- 568 (887)
.+..|+..|.++|++-.+..-.-....+..+ +....+++.+|+.+-..+..|.|.+...+....+. .++.
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 3455666666666654433322222223333 23445777888888888888888888776553210 0000
Q ss_pred ------hhhhhhhHHHHHHHHHHHHHHHHHHHH----H-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 569 ------TQKMQDGHTLKLKALEAQILELKKKQE----S-------QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQ 629 (887)
Q Consensus 569 ------~~Kl~e~~~~kl~~Le~el~~Lkkk~~----~-------~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~ 629 (887)
+.--.+.|-.|+-+|+.++..++.... + ++.+....+..|-+-.+|+.||...|..-..|+
T Consensus 92 esLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll 169 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL 169 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011125578889999998887764432 2 333333445555666666677666665555544
No 245
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.71 E-value=1.3e+02 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002730 666 KLEALNQRQKMVLQRKTEEAA 686 (887)
Q Consensus 666 ~l~~~~~~q~~vLkrK~eE~~ 686 (887)
+.++....++++++||..++.
T Consensus 126 kr~~~~Ka~e~~~kRkQdsa~ 146 (246)
T KOG4657|consen 126 KRQALSKAKENAGKRKQDSAD 146 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 344446778888888877743
No 246
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=73.23 E-value=1.4e+02 Score=32.08 Aligned_cols=77 Identities=18% Similarity=0.245 Sum_probs=38.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 570 QKMQDGHTLKLKALEAQILELKKKQES-QVELLKQKHKSD---EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKAS 645 (887)
Q Consensus 570 ~Kl~e~~~~kl~~Le~el~~Lkkk~~~-~~~l~k~k~~~e---~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~ 645 (887)
+-+++..++++.+||.--.+|...... .--|.-.-++.. +++..|..|+-.-. .=..-|+++|+|+...|+.-+.
T Consensus 104 ~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke-~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 104 HAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE-VLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555433222 112222222222 23445666665433 2334477888888887775444
Q ss_pred HH
Q 002730 646 RE 647 (887)
Q Consensus 646 ~~ 647 (887)
+.
T Consensus 183 r~ 184 (333)
T KOG1853|consen 183 RT 184 (333)
T ss_pred HH
Confidence 33
No 247
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=73.15 E-value=1.4 Score=41.58 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.5
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+-||++|+|||++.
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999887
No 248
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=73.11 E-value=1.4e+02 Score=32.01 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 349 NAEESLNTLKYANRARNIQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGGAPSDEVQVLKGRIAWLEATNEDLCQEL 428 (887)
Q Consensus 349 ~~~ETl~TL~fa~rar~Ikn~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l 428 (887)
+|..|++-|.=+...+.--..-.--.+.....+..++.++..++..-.........-.+..|..++.........+...+
T Consensus 22 ~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l 101 (240)
T PF12795_consen 22 DLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQL 101 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHhcccccccC-CchhhchhhhhhhhcccCCcc-hhhhhhccCCCChhHHHHHHHHhHHHHHhhHHHHHHH
Q 002730 429 HEYRSRRAVVEHCGTDAQEG-PVSFVKSDGLKRGFQSIDSSD-YQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNE 506 (887)
Q Consensus 429 ~~~~~~~~~l~~~~~~aq~~-~~~~~Ki~elk~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~e~~~~q~~l~~EL~e 506 (887)
....+.+..+.-+...++.. ......++++...|......+ .++.+.-. ..+..|+.-
T Consensus 102 ~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~--------------------~~l~ae~~~ 161 (240)
T PF12795_consen 102 QQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQR--------------------WLLQAELAA 161 (240)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHH--------------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHH
Q 002730 507 LNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQ 586 (887)
Q Consensus 507 Lnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~e 586 (887)
|+.++...+.++.... .+..=|..+...+..++..++.+...|...+.. +++.+-|..
T Consensus 162 l~~~~~~le~el~s~~-----~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~-----------------~R~~eae~~ 219 (240)
T PF12795_consen 162 LEAQIEMLEQELLSNN-----NRQELLQLQRDLLKARIQRLQQQLQALQNLLNQ-----------------KRRQEAEQA 219 (240)
T ss_pred HHHHHHHHHHHHHCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002730 587 ILELKKKQES 596 (887)
Q Consensus 587 l~~Lkkk~~~ 596 (887)
+.+...-..+
T Consensus 220 ~~~a~~~~~~ 229 (240)
T PF12795_consen 220 VEEAEQLQEE 229 (240)
T ss_pred HHHHHHHHHH
No 249
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=73.06 E-value=2.4e+02 Score=34.76 Aligned_cols=63 Identities=19% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELL 601 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~ 601 (887)
..|+.++..|++|++.|..++...-. .+.....+..+.+.+|.+||..+.+++....++.+|+
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLL 145 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVE-NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLL 145 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666555555443211 1123334444455555555555555554444444443
No 250
>PRK04863 mukB cell division protein MukB; Provisional
Probab=72.88 E-value=3.6e+02 Score=36.81 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHHHHh
Q 002730 793 ARMERIASLENMLNMSSKALVEMASQLSEAEERER 827 (887)
Q Consensus 793 ~r~~qi~~le~~l~~~~~~~~~~~~~l~eae~~~~ 827 (887)
...+++.+|++..+...+.-..+++++.+...+..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~ 596 (1486)
T PRK04863 562 ELEARLESLSESVSEARERRMALRQQLEQLQARIQ 596 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777887777777777777777766655543
No 251
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=72.85 E-value=2 Score=44.04 Aligned_cols=29 Identities=31% Similarity=0.325 Sum_probs=19.9
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..+++..++.. ...++-.|+||||||++|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34455555543 345667899999999987
No 252
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.80 E-value=1.1 Score=55.71 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002730 625 KVQLQNKIKQEAEQFRQWK 643 (887)
Q Consensus 625 kv~L~kkmkee~~~~r~~k 643 (887)
.-..++.|..+......|.
T Consensus 228 ~e~~i~~Le~el~~~~~~~ 246 (722)
T PF05557_consen 228 AEQKIKELEAELKDQESDA 246 (722)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHhHhhHH
Confidence 3444555555555555553
No 253
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=72.45 E-value=64 Score=34.57 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.2
Q ss_pred CCccCCCCcchhhhhhcCCC
Q 002730 314 VHVPYRDSKLTRLLQDSLGG 333 (887)
Q Consensus 314 ~~iPyRdSKLTrLLqdsLgG 333 (887)
.+||--.++-||||-|.+.|
T Consensus 93 ~~v~a~e~~~~rll~d~i~n 112 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITN 112 (330)
T ss_pred HHHHHhcCcccchhHHHHHh
Confidence 47888888999999988744
No 254
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=72.43 E-value=1.5 Score=41.00 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999876
No 255
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.24 E-value=89 Score=33.41 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002730 582 ALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK---AQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGR 658 (887)
Q Consensus 582 ~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK---~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~r 658 (887)
++...+.+|.+...+-..-...-+..+.-|..|..|+..|- ..+|..+++|.++.+. .+..|.+++.+-.
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~-------lE~iIkqa~~er~ 77 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINT-------LENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 33333444443333333333334445566666666666554 5556666666666655 5556666666666
Q ss_pred hhHHHHHHHH
Q 002730 659 KNEFERHKLE 668 (887)
Q Consensus 659 k~~~ei~~l~ 668 (887)
+.+..+.++.
T Consensus 78 ~~~~~i~r~~ 87 (230)
T PF10146_consen 78 KRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHH
Confidence 6665555444
No 256
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=72.18 E-value=3.3e+02 Score=35.97 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKM-QDGHTLKLKALEAQILELKKKQES 596 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl-~e~~~~kl~~Le~el~~Lkkk~~~ 596 (887)
++..+|++.+....++..++.+++...+.....-..++ ..+-++++.+-..++.++++....
T Consensus 65 ~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~ 127 (1109)
T PRK10929 65 ERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQ 127 (1109)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554332221111111 245566666666666666655443
No 257
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=72.06 E-value=1.5e+02 Score=31.94 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002730 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAE 617 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~E 617 (887)
..|-.+-|.|+.|.++|=.+..+ -|+-+|+.+|+ |++.+.+ +|.+.+......+..|-++
T Consensus 213 K~LMAKCR~L~qENeElG~q~s~-----------------Gria~Le~eLA-mQKs~se--Elkssq~eL~dfm~eLded 272 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQASE-----------------GRIAELEIELA-MQKSQSE--ELKSSQEELYDFMEELDED 272 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhc-----------------ccHHHHHHHHH-HHHhhHH--HHHHhHHHHHHHHHHHHHH
Confidence 34556777888888777544322 24555666663 3333332 4555667777888899999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002730 618 IQSIKAQKVQLQNKIKQ 634 (887)
Q Consensus 618 i~~mK~~kv~L~kkmke 634 (887)
+..|..+=.-|+.++++
T Consensus 273 VEgmqsTiliLQq~Lke 289 (330)
T KOG2991|consen 273 VEGMQSTILILQQKLKE 289 (330)
T ss_pred HhcchhhHHHHHHHHHH
Confidence 99999999999888876
No 258
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=71.48 E-value=2.2 Score=47.76 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=44.7
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCcccccC--CCCCCCCccc----------------------------chHHHHHHHH
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTMG--TGLREGFQTG----------------------------LIPQVMNALF 119 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm~--g~~~~~~~~G----------------------------iIpr~~~~LF 119 (887)
..++-.+..++ +.|+..|.||||||+++- .+|-+...+. -=--.+++|.
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLv 241 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLV 241 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHH
Confidence 34444445555 778889999999999971 1111111111 1112355665
Q ss_pred HHHHhhcccceEEEEEeeeeeehhhHhhccCCcc
Q 002730 120 NKIETLRHQMEFQLHVSFIEILKEEVRDLLDSVS 153 (887)
Q Consensus 120 ~~i~~~~~~~~~~v~vS~~EIynE~v~DLL~~~~ 153 (887)
..--.+.++. +=+-|++..+.+|||..-+
T Consensus 242 kn~LRmRPDR-----IiVGEVRG~Ea~dLL~Amn 270 (355)
T COG4962 242 KNALRMRPDR-----IIVGEVRGVEALDLLQAMN 270 (355)
T ss_pred HHHhhcCccc-----eEEEEecCccHHHHHHHhc
Confidence 4433333332 2356999999999997543
No 259
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.47 E-value=1.5e+02 Score=31.92 Aligned_cols=91 Identities=21% Similarity=0.324 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 002730 572 MQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK---IKQEAEQFRQWKASREK 648 (887)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kk---mkee~~~~r~~k~~~~k 648 (887)
-+.+|+.+|.+++.+....+....+ ++..+..|..+.......+..|-++ +.++..+.+.......+
T Consensus 6 ~k~Ele~rL~q~eee~~~a~~~L~e----------~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~e 75 (246)
T PF00769_consen 6 EKQELEERLRQMEEEMRRAQEALEE----------SEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEE 75 (246)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666554443332 3333334444444444333333332 22222333333333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 002730 649 ELLKLKKEGRKNEFERHKLEALNQ 672 (887)
Q Consensus 649 Ei~qLkk~~rk~~~ei~~l~~~~~ 672 (887)
|-.+|..+.+....++.+|....+
T Consensus 76 Ek~~Le~e~~e~~~~i~~l~ee~~ 99 (246)
T PF00769_consen 76 EKEQLEQELREAEAEIARLEEESE 99 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 260
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=71.23 E-value=5.7 Score=45.13 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=27.4
Q ss_pred eeEE-cc-eeeCCCCCcchhhhhhhhhhHHHHHhcC---CCeEEEeeccCCCCccccc
Q 002730 46 HSFT-FD-HVYGNGGSPSSAMFGECVAPLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~-FD-~Vf~~~~s~q~~vy~~~v~plv~~~l~G---~N~tv~aYGqTGSGKTyTm 98 (887)
+.|. || .||+. ++.-+..|.-+ .....| -+..|+-.|++|||||+..
T Consensus 44 ~~y~~F~~~~~G~-----~~~i~~lv~~l-~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 44 KRYRFFDHDFFGM-----EEAIERFVNYF-KSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eeccccchhccCc-----HHHHHHHHHHH-HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 3444 34 68863 33344444333 333333 4566788899999999764
No 261
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=70.93 E-value=2.4 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=16.6
Q ss_pred cCC-CeEEEeeccCCCCccccc
Q 002730 78 QGY-NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~-N~tv~aYGqTGSGKTyTm 98 (887)
.|- ...++-||++|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 453 456677999999999988
No 262
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=70.84 E-value=94 Score=31.28 Aligned_cols=68 Identities=22% Similarity=0.327 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 573 QDGHTLKLKALEAQILELKKKQESQVELLK----QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFR 640 (887)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k----~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r 640 (887)
.+.++..-++|..++..|+..........+ .-...++.-..|..+...|-....++|++.++-.++.|
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555543333221111 12334455556677777788888888888887777655
No 263
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=70.69 E-value=2.1 Score=44.34 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=15.7
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
|..++..-. ..+..|+.|||||+|+
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l 34 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTL 34 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHH
Confidence 344443322 4566899999999998
No 264
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=70.61 E-value=2.8 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.8
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|....++-||++|+|||++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345788999999999988
No 265
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=70.52 E-value=3.7 Score=39.55 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=26.3
Q ss_pred hhhhHHHHHhcCCC---eEEEee-ccCCCCcccccCCCCCCCCcccchHHHHHHHHHH
Q 002730 68 CVAPLVDGLFQGYN---ATVLAY-GQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNK 121 (887)
Q Consensus 68 ~v~plv~~~l~G~N---~tv~aY-GqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~ 121 (887)
.|-..|.+.+...| ..|+++ |+||+||||+- ..+.+.||..
T Consensus 36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~-------------~liA~~ly~~ 80 (127)
T PF06309_consen 36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS-------------RLIAEHLYKS 80 (127)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH-------------HHHHHHHHhc
Confidence 34445555554332 346555 99999999986 4566777764
No 266
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=70.44 E-value=3.1 Score=47.31 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=36.7
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhc----CCCeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQ----GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~----G~N~tv~aYGqTGSGKTyTm 98 (887)
.+.||++.+.-.. ...|.+.++-.++.+++. -.---++-||+.|+|||+..
T Consensus 111 ~~~f~~~~g~~~~-~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 111 TRSFDNLVGGYYI-APAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hcchhhhcCcccc-CHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 5677877764433 467777777788888774 23346788999999998864
No 267
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=70.09 E-value=2.6e+02 Score=33.93 Aligned_cols=15 Identities=20% Similarity=0.109 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 002730 675 KMVLQRKTEEAAIAT 689 (887)
Q Consensus 675 ~~vLkrK~eE~~a~~ 689 (887)
.+-||--.|++.++|
T Consensus 276 d~~lk~a~eslm~an 290 (861)
T KOG1899|consen 276 DNTLKNALESLMRAN 290 (861)
T ss_pred HHHHHHHHHHHHhhc
Confidence 344555555555555
No 268
>PRK11281 hypothetical protein; Provisional
Probab=69.84 E-value=3.6e+02 Score=35.59 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHH
Q 002730 576 HTLKLKALEAQILELKKKQES-QVELLKQKHKSDEA 610 (887)
Q Consensus 576 ~~~kl~~Le~el~~Lkkk~~~-~~~l~k~k~~~e~~ 610 (887)
-+++|.+++.++++.+....+ .+++..++..-++.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 556666666666665544333 34444444444433
No 269
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=69.74 E-value=1.5 Score=44.08 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=14.8
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
++....|-..+|+.+|.+|+|||+.+
T Consensus 16 l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 16 LDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33334566778999999999999987
No 270
>PRK06547 hypothetical protein; Provisional
Probab=69.57 E-value=3.3 Score=42.06 Aligned_cols=30 Identities=43% Similarity=0.446 Sum_probs=21.1
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
|..++..+..+.--.|+.+|.+|||||+.-
T Consensus 3 ~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 3 VALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344555555555556677799999999875
No 271
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.56 E-value=81 Score=37.94 Aligned_cols=30 Identities=13% Similarity=0.375 Sum_probs=16.4
Q ss_pred ccchHHHHHHHHHHHHhhcccceEEEEEee
Q 002730 108 TGLIPQVMNALFNKIETLRHQMEFQLHVSF 137 (887)
Q Consensus 108 ~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~ 137 (887)
.|.|.++...|=+.+....-+++..|+=+|
T Consensus 163 h~av~~~~reIee~L~~agldyDl~vr~~~ 192 (652)
T COG2433 163 HGAVKRVVREIEEKLDEAGLDYDLEVRESY 192 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeEEeecc
Confidence 367777777776666654333333333333
No 272
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.42 E-value=72 Score=32.98 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002730 533 FGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (887)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (887)
-..++..|..++..++.++.++...+....
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777654
No 273
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=69.19 E-value=2 Score=46.96 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCCeEEEeeccCCCCccccc
Q 002730 79 GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 79 G~N~tv~aYGqTGSGKTyTm 98 (887)
-.++.++..|..|||||+||
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l 30 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTL 30 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHH
Confidence 37788888999999999999
No 274
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=68.98 E-value=2.1e+02 Score=32.58 Aligned_cols=8 Identities=13% Similarity=-0.255 Sum_probs=4.0
Q ss_pred ccccccCC
Q 002730 833 GRWNHLRF 840 (887)
Q Consensus 833 ~~~~~i~s 840 (887)
+-|+.++-
T Consensus 373 sagnyv~g 380 (499)
T COG4372 373 SAGNYVTG 380 (499)
T ss_pred ccCccccc
Confidence 34555543
No 275
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=68.70 E-value=3.6 Score=45.31 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=22.6
Q ss_pred hhhhhhhhHHHHHhcC-CCeEEEeeccCCCCccccc
Q 002730 64 MFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 64 vy~~~v~plv~~~l~G-~N~tv~aYGqTGSGKTyTm 98 (887)
++...|-.++.+.+.| .---.+-||+.|+|||.|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3334444444444444 3345677999999999997
No 276
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=68.50 E-value=70 Score=35.83 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 537 IMELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
+..|+.+...+++|++....-+..+
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l 35 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKL 35 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666655554
No 277
>PRK09183 transposase/IS protein; Provisional
Probab=68.33 E-value=2.7 Score=45.58 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.6
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|.| |+-||++|+||||.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa 119 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLA 119 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4555 557999999999998
No 278
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=68.26 E-value=2.1 Score=48.47 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=19.1
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..++..+.. ..+.|+..|+||||||++|
T Consensus 152 ~~~l~~~v~-~~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 152 EAFLHACVV-GRLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHH-cCCeEEEECCCCccHHHHH
Confidence 334444443 2344677899999999998
No 279
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=68.21 E-value=2.8 Score=46.62 Aligned_cols=27 Identities=44% Similarity=0.730 Sum_probs=21.0
Q ss_pred hHHHHHhcCC---CeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQGY---NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~G~---N~tv~aYGqTGSGKTyTm 98 (887)
|.+...+.|- --|||+ |+||||||+-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 5677777775 347765 99999999988
No 280
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.08 E-value=1.7e+02 Score=31.03 Aligned_cols=79 Identities=25% Similarity=0.337 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002730 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQK-MQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQ 615 (887)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~K-l~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~ 615 (887)
...|+..+..++++...+..++..+. ..+| .......+|+.|+.+-.++- ..--..+..+..|+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN-----~~RK~~Q~~~~~~L~~Le~~W~~~v----------~kn~eie~a~~~Le 202 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVN-----RERKRRQEEAGEELRYLEQRWKELV----------SKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 34555555555555555555554432 1122 22333445555665554444 33445677888899
Q ss_pred HHHHHHHHHHHHHHH
Q 002730 616 AEIQSIKAQKVQLQN 630 (887)
Q Consensus 616 ~Ei~~mK~~kv~L~k 630 (887)
.||.++|..+.++-.
T Consensus 203 ~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 203 QEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999887776544
No 281
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=67.85 E-value=6.4 Score=48.72 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.2
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
.-.++-||..|+|||.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 556788999999999875
No 282
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=67.66 E-value=2.8 Score=47.30 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=18.6
Q ss_pred hHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.++..++.+. ..|+..|.||||||++|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 4444444332 34677899999999998
No 283
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.65 E-value=2.6e+02 Score=33.12 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=49.7
Q ss_pred CCCceeeEEEecCCCCCCHHHHHHHHH--HHHHhcccccccc-cccccchHHHHHHHHHHHHHHHHHh-hh-hCC-CChH
Q 002730 332 GGNSKTVMIACISPADINAEESLNTLK--YANRARNIQNKPV-VNRDLISSDMQKLRQQLKYLQAELC-AR-AGG-APSD 405 (887)
Q Consensus 332 gGns~t~mI~~vsP~~~~~~ETl~TL~--fa~rar~Ikn~p~-vn~d~~~~~i~~l~~~i~~L~~el~-~~-~~~-~~~~ 405 (887)
.|++..+=|..-+|++.-...-.|++- |-+.-...+.... --.+.....+..++.++...+.+|. ++ ..+ ...+
T Consensus 118 ~~~s~vi~Is~~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~ 197 (498)
T TIGR03007 118 AGRDNLFTISYEDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPD 197 (498)
T ss_pred cCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence 445666666667777666666666642 2222211111100 0011223345556666666666665 22 122 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002730 406 EVQVLKGRIAWLEATNEDLCQELHEYRSRRAVV 438 (887)
Q Consensus 406 ~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~l 438 (887)
....+..++..++.+......++.....+...+
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l 230 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDAL 230 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344555555555555555555555544443
No 284
>PHA00729 NTP-binding motif containing protein
Probab=67.56 E-value=3.9 Score=43.49 Aligned_cols=29 Identities=28% Similarity=0.554 Sum_probs=21.6
Q ss_pred hhhHHHHHhc-CCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~-G~N~tv~aYGqTGSGKTyTm 98 (887)
+..++..+.. |+ ..|+.+|.+|+||||..
T Consensus 5 ~k~~~~~l~~~~f-~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 5 AKKIVSAYNNNGF-VSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHHhcCCe-EEEEEECCCCCCHHHHH
Confidence 3455666654 45 47899999999999877
No 285
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=67.55 E-value=3.4 Score=41.09 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=17.2
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..+..+. ..++..|+||||||+++
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~ 41 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAA 41 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHH
Confidence 34444442 34466799999999988
No 286
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=67.15 E-value=3.5 Score=43.21 Aligned_cols=19 Identities=37% Similarity=0.636 Sum_probs=14.0
Q ss_pred CCeEEEeeccCCCCccccc
Q 002730 80 YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm 98 (887)
.+-.|++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5567899999999999876
No 287
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=66.72 E-value=1.6 Score=50.25 Aligned_cols=51 Identities=29% Similarity=0.448 Sum_probs=29.1
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHH-HHhc--C--CCeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~-~~l~--G--~N~tv~aYGqTGSGKTyTm 98 (887)
.++||.|.+-+ .+-+.+.+.+..|+.. ..|. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~-~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLE-EQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcH-HHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 45666665532 2233444444344443 2332 2 2446889999999999876
No 288
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.67 E-value=86 Score=32.93 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 538 MELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
-.+...+..+++|.+++.++|.++
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777666664
No 289
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.58 E-value=3.4 Score=44.53 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.5
Q ss_pred hcCCCeEEEeeccCCCCccccc
Q 002730 77 FQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 77 l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+....+.++-+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 3444557888999999999888
No 290
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=66.43 E-value=2.2e+02 Score=31.83 Aligned_cols=135 Identities=21% Similarity=0.177 Sum_probs=71.5
Q ss_pred cCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 564 NSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAE-IQSIKAQKVQLQNKIKQEAEQFRQW 642 (887)
Q Consensus 564 ~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~E-i~~mK~~kv~L~kkmkee~~~~r~~ 642 (887)
+.++-+.-|..++++--+++|=++.+-++...++.+|.-.-.....+.+.+..= |..-| +..-+|-++-.+..+.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcK----ka~~KaaEegqKA~ei 211 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECK----KALLKAAEEGQKAEEI 211 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHH
Confidence 345555566666666666666666666666655555544333332222222211 11111 2233444554444444
Q ss_pred HHHHHH----------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002730 643 KASREK----------ELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSS 702 (887)
Q Consensus 643 k~~~~k----------Ei~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~ 702 (887)
-...+| |.+.-++.+-..+.++.+|-..+....-.|+-+.+....-.|.||+-.+..+..
T Consensus 212 ~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkei 281 (561)
T KOG1103|consen 212 MLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEI 281 (561)
T ss_pred HHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 334444444555556667777777777777777777777777777766655443
No 291
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=66.37 E-value=2.7 Score=51.35 Aligned_cols=43 Identities=21% Similarity=0.427 Sum_probs=31.3
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.-+||.+++.+ ... ..++..+..++...|+-||++|+|||+..
T Consensus 150 p~~~~~iiGqs-----~~~----~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQE-----RAI----KALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCc-----HHH----HHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46888888632 222 23455566788888999999999999876
No 292
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=66.22 E-value=6.3 Score=49.26 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.6
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..+.+|.|+.|.| |||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 455678999998887 9999998765
No 293
>PRK13764 ATPase; Provisional
Probab=66.02 E-value=3 Score=50.55 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.8
Q ss_pred CCCeEEEeeccCCCCccccc
Q 002730 79 GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 79 G~N~tv~aYGqTGSGKTyTm 98 (887)
.....|+..|+||||||+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 34455899999999999999
No 294
>PRK12704 phosphodiesterase; Provisional
Probab=65.90 E-value=3e+02 Score=33.16 Aligned_cols=164 Identities=22% Similarity=0.220 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhH
Q 002730 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (887)
Q Consensus 497 q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~ 576 (887)
+.+...-+.+...+-+.....+..-........+...++.+.+.+.++...+...++-...|.. ......+.....
T Consensus 37 e~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~----r~e~Lekke~eL 112 (520)
T PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR----KLELLEKREEEL 112 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (887)
Q Consensus 577 ~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~ 656 (887)
..+-+.|+....+|.++..+..++...+...-+++..|..| ..|-.|++++++++..-...-...-.+-+...-+
T Consensus 113 ~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~-----ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (520)
T PRK12704 113 EKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE-----EAKEILLEKVEEEARHEAAVLIKEIEEEAKEEAD 187 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHH
Q 002730 657 GRKNEFERHKLEA 669 (887)
Q Consensus 657 ~rk~~~ei~~l~~ 669 (887)
.+-+..-..-++.
T Consensus 188 ~~a~~i~~~a~qr 200 (520)
T PRK12704 188 KKAKEILAQAIQR 200 (520)
T ss_pred HHHHHHHHHHHHh
No 295
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.90 E-value=1.4e+02 Score=30.93 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 002730 603 QKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQ 672 (887)
Q Consensus 603 ~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~ 672 (887)
...+.+..+..|...|..|+.+...+-. .+....+||.+|+.....-..++..++..++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~-----------~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKE-----------KKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777766655444332 2333448888888888887777777775543
No 296
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=65.89 E-value=2.2 Score=44.27 Aligned_cols=16 Identities=44% Similarity=0.648 Sum_probs=12.6
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
-++.+|.||||||+++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 4688999999999999
No 297
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=65.78 E-value=2.6 Score=45.27 Aligned_cols=18 Identities=44% Similarity=0.695 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
--+|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346889999999999875
No 298
>PRK10884 SH3 domain-containing protein; Provisional
Probab=65.68 E-value=79 Score=33.24 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002730 577 TLKLKALEAQILELKKKQES 596 (887)
Q Consensus 577 ~~kl~~Le~el~~Lkkk~~~ 596 (887)
+.++.+|+.|+.+|+.+..+
T Consensus 92 ~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888765555
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.07 E-value=2.7 Score=46.23 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+-.|+||+|||+|+
T Consensus 196 vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 196 VIALVGPTGVGKTTTL 211 (282)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999999
No 300
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=65.04 E-value=4 Score=41.85 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=18.1
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..++.|.| ++..++||+|||.+.
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 344556887 467889999999874
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=64.75 E-value=2.6 Score=40.53 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999876
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.63 E-value=3 Score=47.94 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=16.2
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
...|+.+|+||+|||+|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457888999999999999
No 303
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.63 E-value=2.4e+02 Score=31.60 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002730 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQES 596 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~ 596 (887)
..|......++.+...|...+.- ...+....+.+...|+.++..|++...+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~--------l~~~~~~l~~~~~~L~~e~~~L~~~~~e 197 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELEL--------LNSIKPKLRDRKDALEEELRQLKQLEDE 197 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444555555555555444332 3345556667888888888888877666
No 304
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.58 E-value=2.4e+02 Score=31.57 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcccccccCCchhhchhh
Q 002730 380 DMQKLRQQLKYLQAELCARAGGA--PSDEVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVEHCGTDAQEGPVSFVKSDG 457 (887)
Q Consensus 380 ~i~~l~~~i~~L~~el~~~~~~~--~~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~l~~~~~~aq~~~~~~~Ki~e 457 (887)
++.+|+.+-+.|..+|....+.. ...+.+.+..-+..+.++|..|+..|..+...|.+.+++.
T Consensus 100 e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees--------------- 164 (401)
T PF06785_consen 100 ESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES--------------- 164 (401)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH---------------
Q ss_pred hhhhhcccCCcchhhhhhccCCCChhHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHH
Q 002730 458 LKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKI 537 (887)
Q Consensus 458 lk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl 537 (887)
.+|+.||.|--.....+-++....- +....|-..-+.-|
T Consensus 165 ----------------------------------------q~LnrELaE~layqq~L~~eyQatf-~eq~~ml~kRQ~yI 203 (401)
T PF06785_consen 165 ----------------------------------------QTLNRELAEALAYQQELNDEYQATF-VEQHSMLDKRQAYI 203 (401)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHhhccc-ccchhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccchh-hhhhhHHHHHHHHHH
Q 002730 538 MELEEEKRIVQQERDRLLAEIENLAANSDGHTQ-KMQDGHTLKLKALEA 585 (887)
Q Consensus 538 ~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~-Kl~e~~~~kl~~Le~ 585 (887)
..||.++.+|--|...|++.=.+.......... --++-+-+-+.+|++
T Consensus 204 ~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkk 252 (401)
T PF06785_consen 204 GKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKK 252 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHH
No 305
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=64.58 E-value=3 Score=42.39 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999976
No 306
>PRK13342 recombination factor protein RarA; Reviewed
Probab=64.38 E-value=3.6 Score=47.80 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+...+-.+.-..++-||++|+|||++.
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 333334555556777999999999887
No 307
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=64.30 E-value=2.1e+02 Score=30.85 Aligned_cols=108 Identities=25% Similarity=0.382 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002730 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (887)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~ 612 (887)
.+.+-.+|+.+...++.+.......|... +.+...|+.++. ..+.+-..|.+.....+....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~---------------e~~a~~Leek~k---~aeeea~~Le~k~~eaee~~~ 64 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEES---------------EETAEELEEKLK---QAEEEAEELEQKRQEAEEEKQ 64 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777766666665442 122223333221 112222223333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002730 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEA 669 (887)
Q Consensus 613 ~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~ 669 (887)
.|..+...-...|..|..++ ...+.+|.+|.....++..+...|+.
T Consensus 65 rL~~~~~~~~eEk~~Le~e~-----------~e~~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQEL-----------REAEAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHH------------HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333333334443333 33555667777777777777776664
No 308
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=63.98 E-value=13 Score=44.86 Aligned_cols=67 Identities=18% Similarity=0.354 Sum_probs=40.1
Q ss_pred cceeeCCCCCcchhhhhhhhhhHHHHHh--cCCCeEEEeeccCCCCcc---------------cccCC----CCCCCCcc
Q 002730 50 FDHVYGNGGSPSSAMFGECVAPLVDGLF--QGYNATVLAYGQTGSGKT---------------YTMGT----GLREGFQT 108 (887)
Q Consensus 50 FD~Vf~~~~s~q~~vy~~~v~plv~~~l--~G~N~tv~aYGqTGSGKT---------------yTm~g----~~~~~~~~ 108 (887)
|+.+|| .+++-+.+|..+...+. ..-...++-.|++|+||| |++-| ++-.....
T Consensus 75 F~d~yG-----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYG-----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccC-----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCC
Confidence 566675 34555566655544443 344556777799999999 45534 22233446
Q ss_pred cch-HHHHHHHHHH
Q 002730 109 GLI-PQVMNALFNK 121 (887)
Q Consensus 109 GiI-pr~~~~LF~~ 121 (887)
|+| |.-...+|..
T Consensus 150 ~L~p~~~~~~~le~ 163 (644)
T PRK15455 150 GLFDPDEDGPILEE 163 (644)
T ss_pred CCCChhhhHHHHHH
Confidence 888 4556666643
No 309
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=63.82 E-value=1.9e+02 Score=30.06 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 002730 406 EVQVLKGRIAWLEATNEDLCQELHEYRSRRAVVE 439 (887)
Q Consensus 406 ~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~l~ 439 (887)
++..++.+|..++.+.+.-+.++..+..++...+
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eae 38 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAE 38 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666655556655555554443
No 310
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=63.78 E-value=1.9e+02 Score=30.02 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 536 KIMELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
.|..|+.-.+.|..|..+|...+..+
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ 34 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETA 34 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35566666667777777776666654
No 311
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=63.70 E-value=2.4 Score=39.36 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999988
No 312
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=63.53 E-value=3.4e+02 Score=32.95 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 584 EAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK 631 (887)
Q Consensus 584 e~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kk 631 (887)
=.++.+||-+.. -|.|.+...|++.+.-+++|+.+.+.||-.+-+
T Consensus 180 maevSeLKLklt---alEkeq~e~E~K~R~se~l~qevn~~kv~e~~~ 224 (861)
T KOG1899|consen 180 MAEVSELKLKLT---ALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQ 224 (861)
T ss_pred HHHHHHhHHHHH---HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444433 345566667777777778888777777765543
No 313
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.39 E-value=2.8 Score=39.25 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999887
No 314
>PTZ00424 helicase 45; Provisional
Probab=62.90 E-value=4 Score=46.82 Aligned_cols=26 Identities=31% Similarity=0.618 Sum_probs=20.0
Q ss_pred hHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..+..++.|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345567889985 46789999999875
No 315
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=62.56 E-value=5.2 Score=46.77 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=14.1
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999887
No 316
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.47 E-value=6.2 Score=43.49 Aligned_cols=29 Identities=38% Similarity=0.510 Sum_probs=22.5
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34555 445566778889999999999987
No 317
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.40 E-value=2.8 Score=40.36 Aligned_cols=15 Identities=47% Similarity=0.625 Sum_probs=13.7
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999887
No 318
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=62.20 E-value=10 Score=42.86 Aligned_cols=29 Identities=38% Similarity=0.482 Sum_probs=22.3
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
...++..++.+. +.|+..|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 455666666643 67888999999999987
No 319
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.94 E-value=3.4 Score=47.23 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
...|+-+|+||+|||+|+
T Consensus 137 g~ii~lvGptGvGKTTti 154 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTT 154 (374)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456778999999999999
No 320
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.85 E-value=2.6e+02 Score=31.00 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 594 QESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQ 641 (887)
Q Consensus 594 ~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~ 641 (887)
+.-|..|.++-++.+ .++.++..|...=|++.+++.+..+.|+.
T Consensus 189 qe~he~m~k~~~~~D----e~Rkeade~he~~ve~~~~~~e~~ee~~~ 232 (294)
T COG1340 189 QEYHEEMIKLFEEAD----ELRKEADELHEEFVELSKKIDELHEEFRN 232 (294)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444666666554443 56777777777777777777777777776
No 321
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=61.80 E-value=4.6 Score=48.24 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=22.6
Q ss_pred hhhHHHHHhcCCC--eEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYN--ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N--~tv~aYGqTGSGKTyTm 98 (887)
|+..+...+.|.. ..++.+||+|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4556666665543 46788999999999998
No 322
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.42 E-value=2.3 Score=49.14 Aligned_cols=52 Identities=27% Similarity=0.402 Sum_probs=33.1
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHH-HHhc--C--CCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~-~~l~--G--~N~tv~aYGqTGSGKTyTm 98 (887)
..++|+.|-+.+ ..-..+.+.+.-|+.. .++. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~-~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLD-IQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 357788887753 2334454444445543 3443 2 3457889999999999887
No 323
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.25 E-value=5.7e+02 Score=34.75 Aligned_cols=215 Identities=17% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 002730 484 IEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFG------------KKIMELEEEKRIVQQER 551 (887)
Q Consensus 484 ~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye------------~kl~eLe~ei~~lq~Er 551 (887)
+...+.+--....-+.+..++.+|..+|+.+++.+..+. .....+...|+ ..+..-+..+.....+.
T Consensus 731 IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~-~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l 809 (1353)
T TIGR02680 731 IGAAARERARLRRIAELDARLAAVDDELAELARELRALG-ARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAEREL 809 (1353)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhccCccchhhhh----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002730 552 DRLLAEIENLAANSDGHTQKMQ----------------------DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDE 609 (887)
Q Consensus 552 d~Ll~~l~~~~~~~~~~~~Kl~----------------------e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~ 609 (887)
+.....+...........+.+. +.|+..+..|......|.............-+..+.
T Consensus 810 ~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~ 889 (1353)
T TIGR02680 810 ARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAES 889 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 610 AAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIAT 689 (887)
Q Consensus 610 ~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~ 689 (887)
.+...+.++.....+-..+..++..=-+.....-.....+|.+++.+......++..+.........-+.+--++...+.
T Consensus 890 ~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~ 969 (1353)
T TIGR02680 890 DAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEAD 969 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002730 690 KRLKELLEAR 699 (887)
Q Consensus 690 krlk~~l~~~ 699 (887)
..+...-..+
T Consensus 970 ~~~~~~~~~~ 979 (1353)
T TIGR02680 970 ATLDERAEAR 979 (1353)
T ss_pred HHHHHHHHHH
No 324
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=61.19 E-value=6.4 Score=46.42 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=33.8
Q ss_pred EEEeeccCCCCccccc---CCCCCCCCcccchHHHHHHHHHHHHhh
Q 002730 83 TVLAYGQTGSGKTYTM---GTGLREGFQTGLIPQVMNALFNKIETL 125 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm---~g~~~~~~~~GiIpr~~~~LF~~i~~~ 125 (887)
-||..|+|.|||||-- ++....+--.|-+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4899999999999986 233335556788888899999998764
No 325
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.16 E-value=87 Score=39.64 Aligned_cols=11 Identities=45% Similarity=0.673 Sum_probs=5.5
Q ss_pred hhhcccCCeee
Q 002730 872 SEVLSKHPLMI 882 (887)
Q Consensus 872 ~e~~~~~~~~~ 882 (887)
.+.|..||.+.
T Consensus 752 ~~~L~~~~~V~ 762 (782)
T PRK00409 752 QEFLKKHPSVK 762 (782)
T ss_pred HHHHcCCCcee
Confidence 34455555543
No 326
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.12 E-value=3.7 Score=45.41 Aligned_cols=16 Identities=50% Similarity=0.740 Sum_probs=13.8
Q ss_pred eEEEeeccCCCCcccc
Q 002730 82 ATVLAYGQTGSGKTYT 97 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyT 97 (887)
+.|+..|+||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 4588899999999975
No 327
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=60.85 E-value=2.8e+02 Score=30.99 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCccchhhhh
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA----NSDGHTQKMQ 573 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~----~~~~~~~Kl~ 573 (887)
++...+-.+....|+..-+.++.|+...+......-...|.+....|..++.+.+.|...+..... ......-.+-
T Consensus 44 EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~ 123 (301)
T PF06120_consen 44 EQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYII 123 (301)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Confidence 334445555555666666666666644443334444455666666666666666666665543211 1111111222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 574 DGHTLKLKALEAQILELKKKQE-SQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK 631 (887)
Q Consensus 574 e~~~~kl~~Le~el~~Lkkk~~-~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kk 631 (887)
..+ ..+.+....+.++..... ++.++ .+...+....+.-+..+..+++.++++
T Consensus 124 n~~-~~~~~~t~~la~~t~~L~~~~~~l----~q~~~k~~~~q~~l~~~~~~~~~~ir~ 177 (301)
T PF06120_consen 124 NHL-MSQADATRKLAEATRELAVAQERL----EQMQSKASETQATLNDLTEQRIDLIRQ 177 (301)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 123333333333332211 22233 333445566677777778888877753
No 328
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=60.79 E-value=2e+02 Score=29.32 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 002730 600 LLKQKHKSDEAAKRLQAEIQSIK 622 (887)
Q Consensus 600 l~k~k~~~e~~~~~L~~Ei~~mK 622 (887)
+.....+-+..|..|+.+|...|
T Consensus 129 i~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 129 IQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777777777544
No 329
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=60.72 E-value=23 Score=41.41 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002730 578 LKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQ 624 (887)
Q Consensus 578 ~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~ 624 (887)
.+..+||++|..|+ .+...+.+..+..+.+|+.|++|+..|+.|
T Consensus 76 ~kasELEKqLaaLr---qElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 76 VTAAQMQKQYEEIR---RELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 35555566555552 222233345555566667777777666644
No 330
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.66 E-value=5.6 Score=45.62 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.2
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
..-|.-.||||.|||+|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 555666799999999999
No 331
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=60.43 E-value=4.1 Score=44.12 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.3
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
...|+-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 345788999999999987
No 332
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=60.41 E-value=3.5 Score=45.43 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=37.8
Q ss_pred EEEeeccCCCCcccccC----C----CCC-----CCCcccchHHHHHHHHHH--HHhh---cccc----------eEEEE
Q 002730 83 TVLAYGQTGSGKTYTMG----T----GLR-----EGFQTGLIPQVMNALFNK--IETL---RHQM----------EFQLH 134 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm~----g----~~~-----~~~~~GiIpr~~~~LF~~--i~~~---~~~~----------~~~v~ 134 (887)
-...||+|||||++.+- + +.+ -..+.|+||-.=...++. .+.. .++. .-.|.
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 34569999999999872 1 111 124678888754433322 1111 1110 11256
Q ss_pred EeeeeeehhhHhhccCCc
Q 002730 135 VSFIEILKEEVRDLLDSV 152 (887)
Q Consensus 135 vS~~EIynE~v~DLL~~~ 152 (887)
+||=|+-.++=+|.=+|.
T Consensus 169 msy~e~t~~~NldI~~p~ 186 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPN 186 (369)
T ss_pred ecHhhhCCccccCCCCch
Confidence 666666666666665553
No 333
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=60.16 E-value=3.7e+02 Score=32.31 Aligned_cols=164 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhH
Q 002730 497 QNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGH 576 (887)
Q Consensus 497 q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~ 576 (887)
+.+...-+.+...+-+.....+..-........+...++.+.+.+.++...+...++-...|.. ......+.....
T Consensus 31 e~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lek----r~e~Lekre~~L 106 (514)
T TIGR03319 31 EELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDR----KMESLDKKEENL 106 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 577 TLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKE 656 (887)
Q Consensus 577 ~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~ 656 (887)
..+-++|+.+-.+|.++..++..+...+...-+++..|..| ..|-.|++++++++..-.......-.+-+....+
T Consensus 107 e~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~-----eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 181 (514)
T TIGR03319 107 EKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE-----EAKEILLEEVEEEARHEAAKLIKEIEEEAKEEAD 181 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHH
Q 002730 657 GRKNEFERHKLEA 669 (887)
Q Consensus 657 ~rk~~~ei~~l~~ 669 (887)
..-+..-..-++.
T Consensus 182 ~~a~~i~~~aiqr 194 (514)
T TIGR03319 182 KKAKEILATAIQR 194 (514)
T ss_pred HHHHHHHHHHHHh
No 334
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=59.91 E-value=5.2 Score=47.04 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=18.9
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..+++|.| |++.++||||||.+.
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHHH
Confidence 445678888 677889999999764
No 335
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=59.73 E-value=1.7e+02 Score=33.75 Aligned_cols=59 Identities=29% Similarity=0.272 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFG---KKIMELEEEKRIVQQERDRLLAE 557 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye---~kl~eLe~ei~~lq~Erd~Ll~~ 557 (887)
.+.+..+..+|.+|++-+.....+.. ....++-.|+ .++.+.|.++..||+|.+.+..+
T Consensus 9 s~~dqr~~~~~~~laq~~k~~s~~~a-q~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 9 SENDQRLIDLNTELAQCEKAQSRLSA-QLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655554444331 0111111121 44555555555555555555443
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=59.69 E-value=5.4 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=17.1
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|--..++-||++|+|||++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 454457788999999999887
No 337
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=59.67 E-value=12 Score=41.53 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=35.4
Q ss_pred hhhhhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeee
Q 002730 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEIL 141 (887)
Q Consensus 67 ~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIy 141 (887)
..+..+|.+.=..-+.||.-||+=|||||+.| +.+...+.......-+.|.++.+..-
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l-----------------~~l~~~L~~~~~~~~~~i~fn~w~~~ 63 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL-----------------NMLKEELKEDNKEKYIFIYFNAWEYD 63 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHH-----------------HHHHHHHhcccccceeeEEEccccCC
Confidence 33444444332356788999999999999988 34444444432233455666666653
No 338
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=59.52 E-value=5.9 Score=45.23 Aligned_cols=35 Identities=14% Similarity=0.413 Sum_probs=26.1
Q ss_pred cchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 60 PSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 60 ~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|..+|+.++..+.. .....+|.-|+.|+||||.+
T Consensus 5 eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 477888887655443 34456688999999999998
No 339
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=59.37 E-value=4.7 Score=44.45 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.9
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.++-||++|+|||+..
T Consensus 32 ~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLA 47 (305)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999887
No 340
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.34 E-value=1.2e+02 Score=30.42 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002730 540 LEEEKRIVQQERDRLLAEIEN 560 (887)
Q Consensus 540 Le~ei~~lq~Erd~Ll~~l~~ 560 (887)
|+.++..++.+...|..+|.+
T Consensus 84 L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 341
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=58.89 E-value=4.1 Score=46.73 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
++.+|+||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999987
No 342
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=58.72 E-value=85 Score=28.88 Aligned_cols=80 Identities=28% Similarity=0.378 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-Cccch-hhhhhhHHHHH
Q 002730 505 NELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA--N-SDGHT-QKMQDGHTLKL 580 (887)
Q Consensus 505 ~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~--~-~~~~~-~Kl~e~~~~kl 580 (887)
.+|.++|.--|++...+. ++|.+|+.+.+.+..|..+....+....+ . +.+.. .--...-...|
T Consensus 4 aeLR~qLqFvEEEa~LlR------------Rkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eL 71 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLR------------RKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEEL 71 (96)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHH
Confidence 456777777777666654 88999999999999999988876644321 1 11111 11112345567
Q ss_pred HHHHHHHHHHHHHHHH
Q 002730 581 KALEAQILELKKKQES 596 (887)
Q Consensus 581 ~~Le~el~~Lkkk~~~ 596 (887)
+..+.||..|..|..+
T Consensus 72 k~a~~qi~~Ls~kv~e 87 (96)
T PF11365_consen 72 KLAREQINELSGKVME 87 (96)
T ss_pred HHHHHHHHHHhhHHHH
Confidence 7788888888766543
No 343
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=58.69 E-value=4.3 Score=41.99 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=14.5
Q ss_pred CCeEEEeeccCCCCccccc
Q 002730 80 YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm 98 (887)
....||..|+.|||||+++
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3456888999999999887
No 344
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=58.67 E-value=90 Score=28.85 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002730 727 KWLEHELEVSANVHEVRFKYEKQSQVQAALADELTILKQV 766 (887)
Q Consensus 727 ~w~~~e~ei~~~v~e~~~~le~l~~~R~~l~~el~~Lk~~ 766 (887)
.+++..++.-....++...++.|.+.|..+++++..++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 4788888888888999999999999999999999998864
No 345
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.67 E-value=1.3e+02 Score=30.69 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 576 HTLKLKALEAQILELKKKQESQ----VELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKEL 650 (887)
Q Consensus 576 ~~~kl~~Le~el~~Lkkk~~~~----~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi 650 (887)
++-++++|+++++.++++..+- .+..+.++..++.-..|..++..++. .++.||.+..+++...-.---.+
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk----~~e~lr~el~k~~e~dpqv~~k~ 153 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKK----ILESLRWELAKIQETDPQVFEKK 153 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhcCHHHHHHH
Confidence 4567888888888887665442 22222445555555566666666665 56777888887777555443333
No 346
>PRK10536 hypothetical protein; Provisional
Probab=58.50 E-value=5.8 Score=43.00 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
+..|+..|++||||||..
T Consensus 74 ~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 74 KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 348899999999999976
No 347
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.39 E-value=4.7e+02 Score=32.89 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 581 KALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (887)
Q Consensus 581 ~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkm 632 (887)
.-|+.|+.....++.+..+....-.-.++.+..+..|.+.++..---|++++
T Consensus 709 ~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L 760 (970)
T KOG0946|consen 709 DLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKEL 760 (970)
T ss_pred HHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433334444333333333344444455555555555444444444
No 348
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=58.31 E-value=3.7e+02 Score=31.65 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=12.3
Q ss_pred cccCCHHHHHHHHHHHHHHH
Q 002730 836 NHLRFMGDAKNLLQYMFNVA 855 (887)
Q Consensus 836 ~~i~s~~eAk~~l~~l~~~~ 855 (887)
-.+.=...-|.+|.|||.-.
T Consensus 434 a~v~I~~~~rt~l~yll~Pl 453 (457)
T TIGR01000 434 GKISTITGKKTYFNYYKDKL 453 (457)
T ss_pred EEEEEEEcceeHHHHHHHHH
Confidence 33333456688888887644
No 349
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=58.25 E-value=15 Score=46.85 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
++++-+|+||+|||++-
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56888999999999987
No 350
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.06 E-value=4.2e+02 Score=32.22 Aligned_cols=117 Identities=19% Similarity=0.280 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002730 533 FGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAK 612 (887)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~ 612 (887)
..+.+..+...+..+...-..|..++..+.... .|.+......+.++.++..|.+....-...+..+... -.
T Consensus 304 V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY-----~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~---yS 375 (560)
T PF06160_consen 304 VEKNLKELYEYLEHAKEQNKELKEELERVSQSY-----TLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVP---YS 375 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC---HH
Confidence 345666666777777777777766666654322 2222333344455555544444333322222111110 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 613 RLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 613 ~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
.+ ...++.+.+.......+.......+..|++...+.+..+.+++
T Consensus 376 ~i-----------~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 376 EI-----------QEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1123445556666666666777778888888777777777666
No 351
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=57.78 E-value=4.5 Score=34.02 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999877
No 352
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=57.67 E-value=4.7e+02 Score=32.69 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=17.2
Q ss_pred cchhhhhhhHHHHHHH------HHHHHHHHHHHH
Q 002730 567 GHTQKMQDGHTLKLKA------LEAQILELKKKQ 594 (887)
Q Consensus 567 ~~~~Kl~e~~~~kl~~------Le~el~~Lkkk~ 594 (887)
++..||++++-++|++ |...+.-|+...
T Consensus 511 eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 511 EKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 3466777777777775 555555555443
No 353
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=57.56 E-value=6.2 Score=51.51 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHH
Q 002730 66 GECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMN 116 (887)
Q Consensus 66 ~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~ 116 (887)
...+..+++.+-+|...+++. .+||||||+|| .+++-+.+.
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~ta---------i~li~~L~~ 459 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTA---------IALMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHH---------HHHHHHHHh
No 354
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.54 E-value=3.6e+02 Score=31.29 Aligned_cols=50 Identities=16% Similarity=0.060 Sum_probs=37.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 651 LKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARK 700 (887)
Q Consensus 651 ~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k 700 (887)
.||..+.-.-...+..|+.+-+++..=.+|-.+.+-+++-|+....+-++
T Consensus 307 qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~ 356 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRV 356 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555568888999999998899999999999999888765543
No 355
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.45 E-value=2.4e+02 Score=29.31 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002730 500 MDKELNELNKRLEQKE 515 (887)
Q Consensus 500 l~~EL~eLnk~Le~KE 515 (887)
+..++.++...|+...
T Consensus 17 L~n~l~elq~~l~~l~ 32 (194)
T PF15619_consen 17 LQNELAELQRKLQELR 32 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 356
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.25 E-value=2.5e+02 Score=35.63 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQ 638 (887)
Q Consensus 609 ~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~ 638 (887)
+....|..+...++..+-+++.+.+++.++
T Consensus 548 ~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~ 577 (782)
T PRK00409 548 KLKEELEEKKEKLQEEEDKLLEEAEKEAQQ 577 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555443
No 357
>PF14282 FlxA: FlxA-like protein
Probab=57.18 E-value=51 Score=30.79 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002730 535 KKIMELEEEKRIVQQERDRLL 555 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll 555 (887)
..|..|+.+|..|+.++.+|.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666665553
No 358
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.17 E-value=9.4 Score=41.39 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.7
Q ss_pred HHhcCCCeEEEeeccCCCCccccc
Q 002730 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 75 ~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
++-+||.-.|+|.|.||-|||+.|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 456899999999999999999887
No 359
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.98 E-value=3.5 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002730 533 FGKKIMELEEEKRIVQQERDRLL 555 (887)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll 555 (887)
|...+..++.++..|+.+.++|.
T Consensus 265 ~~~~~e~le~ei~~L~q~~~eL~ 287 (713)
T PF05622_consen 265 LKIELEELEKEIDELRQENEELQ 287 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555544
No 360
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=56.83 E-value=66 Score=37.11 Aligned_cols=71 Identities=30% Similarity=0.374 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 528 ALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSD-GHTQKMQDGHTLKLKALEAQILELKKKQESQV 598 (887)
Q Consensus 528 ~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~-~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~ 598 (887)
....++..||-.+-++|+..+..||+-..++-.+....| .+..+++..|+||=+---..|..|++|.....
T Consensus 4 ~~~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~ 75 (395)
T PF10267_consen 4 AAIDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYH 75 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999998877655544 34569999999999988889988888876633
No 361
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=56.83 E-value=7.3 Score=42.99 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.8
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 454445788999999999887
No 362
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=56.78 E-value=6.2 Score=45.98 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.8
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|..+++|-| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678887 788899999999874
No 363
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=56.70 E-value=6.9 Score=45.74 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.6
Q ss_pred CCCCceeeEEEecCCCCCCHHHHHHHHHHHHH
Q 002730 331 LGGNSKTVMIACISPADINAEESLNTLKYANR 362 (887)
Q Consensus 331 LgGns~t~mI~~vsP~~~~~~ETl~TL~fa~r 362 (887)
+.-..+..+|||+..++.+ +..|.+|-|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~Alr 347 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALR 347 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHH
Confidence 4557899999999999865 445666544
No 364
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=56.62 E-value=7.6 Score=48.03 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=21.3
Q ss_pred hhhhHHHHHhc-----CCCeEEEeeccCCCCccccc
Q 002730 68 CVAPLVDGLFQ-----GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 68 ~v~plv~~~l~-----G~N~tv~aYGqTGSGKTyTm 98 (887)
++..+++.+.. |.+..|+. -+||||||+||
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~ 280 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTM 280 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEE-EecCCCccHHH
Confidence 35667777766 34555544 48999999999
No 365
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.59 E-value=3e+02 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 630 NKIKQEAEQFRQWKASREKELLKLKK 655 (887)
Q Consensus 630 kkmkee~~~~r~~k~~~~kEi~qLkk 655 (887)
..|+.+...||..-...+.+|-+|+.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777755555555555443
No 366
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.35 E-value=3.2e+02 Score=30.31 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002730 608 DEAAKRLQAEIQSIKAQKVQLQNK---IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLE 668 (887)
Q Consensus 608 e~~~~~L~~Ei~~mK~~kv~L~kk---mkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~ 668 (887)
-++|..|.++++....+-.++.+. +|.++...-..=....+.+-.+.++-+..++++..+.
T Consensus 178 ~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 178 HEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345556666666655554444433 3444444444444444555555555555555555444
No 367
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=55.99 E-value=3.2e+02 Score=30.28 Aligned_cols=97 Identities=20% Similarity=0.293 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---c-c-Cc--cchhhhhhh
Q 002730 503 ELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLA---A-N-SD--GHTQKMQDG 575 (887)
Q Consensus 503 EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~---~-~-~~--~~~~Kl~e~ 575 (887)
|...|..-+.++|+-+-..+ ....--..|..++.+|.++.+.|+.|.....---..+. + + .| ++.=-++ .
T Consensus 36 EVEKLsqTi~ELEEaiLagG--aaaNavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDkvMPVK-q 112 (351)
T PF07058_consen 36 EVEKLSQTIRELEEAILAGG--AAANAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDKVMPVK-Q 112 (351)
T ss_pred HHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCccccHH-H
Confidence 45556666666666554433 22333457999999999999999998876654322221 1 1 11 1222222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 576 HTLKLKALEAQILELKKKQESQVELLK 602 (887)
Q Consensus 576 ~~~kl~~Le~el~~Lkkk~~~~~~l~k 602 (887)
|-.--.-|+.+++.|+-|..--.+--|
T Consensus 113 WLEERR~lQgEmQ~LrDKLAiaERtAk 139 (351)
T PF07058_consen 113 WLEERRFLQGEMQQLRDKLAIAERTAK 139 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211123378888888877766444444
No 368
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=55.90 E-value=6.1 Score=43.25 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=18.5
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+++.++.. +--|+-+|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 34444432 556788999999999877
No 369
>PHA02244 ATPase-like protein
Probab=55.48 E-value=11 Score=43.19 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=18.4
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..+..-+-.|.+. +-+|+||+|||+..
T Consensus 110 ~ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 110 ADIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 3444444456654 55899999999876
No 370
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=55.44 E-value=99 Score=28.76 Aligned_cols=56 Identities=29% Similarity=0.309 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 571 KMQDGHTLKLKALEAQILELKKKQ-ESQVELL---KQKHKSDEAAKRLQAEIQSIKAQKVQLQN 630 (887)
Q Consensus 571 Kl~e~~~~kl~~Le~el~~Lkkk~-~~~~~l~---k~k~~~e~~~~~L~~Ei~~mK~~kv~L~k 630 (887)
||..+| ..|..+...||+.. .+|++-. ..-...|..++++.+|+..|-..--+|.|
T Consensus 2 kla~eY----sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~k 61 (102)
T PF10205_consen 2 KLAQEY----SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTK 61 (102)
T ss_pred hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 55778888888763 3344443 34456777888888888877644444443
No 371
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.41 E-value=4.4 Score=43.28 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=63.6
Q ss_pred ceEEEEEeCCCCchhhccCC---------ceEEEEeCCCcceeec---c---eeEEcceeeCCCCCcchhhhhhhhhhHH
Q 002730 9 SVKVAVHVRPLIGDERAQGC---------KECVAVTHGNPQVQIG---T---HSFTFDHVYGNGGSPSSAMFGECVAPLV 73 (887)
Q Consensus 9 ~v~V~vRvRP~~~~E~~~~~---------~~~~~~~~~~~~v~~~---~---~~F~FD~Vf~~~~s~q~~vy~~~v~plv 73 (887)
.-.-+|||-..+.+|..... ...|.+.|-+.-..+. . -..+|..|=+-+ -+.++|-+.+--|+.
T Consensus 98 gsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld-~qkqeireavelplt 176 (408)
T KOG0727|consen 98 GSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLD-VQKQEIREAVELPLT 176 (408)
T ss_pred CCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccch-hhHHHHHHHHhccch
Confidence 34567899888888863321 1123333332211111 1 123444444322 344566666556766
Q ss_pred HHHh---cCCC--eEEEeeccCCCCcccccC-----C--CCC-------CCCcccchHHHHHHHHHHHHhhcc
Q 002730 74 DGLF---QGYN--ATVLAYGQTGSGKTYTMG-----T--GLR-------EGFQTGLIPQVMNALFNKIETLRH 127 (887)
Q Consensus 74 ~~~l---~G~N--~tv~aYGqTGSGKTyTm~-----g--~~~-------~~~~~GiIpr~~~~LF~~i~~~~~ 127 (887)
..-+ =|.+ -.|+.||+.|+|||...- + .|- -....|==||.++++|.......+
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 5443 1443 358999999999985431 0 010 011236669999999988766443
No 372
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=55.30 E-value=6.6 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..++.|.|. ++-++||||||.+.
T Consensus 39 ip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCcE--EEECCCCchHHHHH
Confidence 4456789884 56779999999865
No 373
>PLN03025 replication factor C subunit; Provisional
Probab=55.16 E-value=8.1 Score=43.14 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=14.1
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.++-||++|+|||++.
T Consensus 36 ~lll~Gp~G~GKTtla 51 (319)
T PLN03025 36 NLILSGPPGTGKTTSI 51 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4666999999999998
No 374
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=55.13 E-value=3.8 Score=45.07 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=19.0
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|++-+|+..|++|+|||..+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 489999999999999998766
No 375
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.12 E-value=4.8e+02 Score=31.97 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 002730 526 TEALRHHFGKKIMELEEEKR--------IVQQERDRLLAEI 558 (887)
Q Consensus 526 ~~~lk~~ye~kl~eLe~ei~--------~lq~Erd~Ll~~l 558 (887)
...|+.+..+.|..||++.+ .|++|.+.+...+
T Consensus 492 YKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f 532 (948)
T KOG0577|consen 492 YKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANF 532 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 45688888888888888765 4555555555443
No 376
>PF05729 NACHT: NACHT domain
Probab=54.88 E-value=5.6 Score=38.85 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.4
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+.+|.+|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4788999999999988
No 377
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=54.79 E-value=1.1e+02 Score=38.61 Aligned_cols=18 Identities=22% Similarity=0.078 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 002730 840 FMGDAKNLLQYMFNVAAE 857 (887)
Q Consensus 840 s~~eAk~~l~~l~~~~~~ 857 (887)
+..||...|...++.|.-
T Consensus 702 ~~~eA~~~l~~~ld~a~~ 719 (771)
T TIGR01069 702 RSEEALDRLEKFLNDALL 719 (771)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 445555555555554443
No 378
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=54.48 E-value=4.2e+02 Score=31.16 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 534 GKKIMELEEEKRIVQQERDRLLAEIENL 561 (887)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~~ 561 (887)
...+..+...+..++.+...+...+...
T Consensus 171 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 198 (457)
T TIGR01000 171 EKTKAQLDQQISKTDQKLQDYQALKNAI 198 (457)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665555543
No 379
>PRK04328 hypothetical protein; Provisional
Probab=54.23 E-value=8.4 Score=41.50 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=21.9
Q ss_pred hHHHHHhcC---CCeEEEeeccCCCCcccc
Q 002730 71 PLVDGLFQG---YNATVLAYGQTGSGKTYT 97 (887)
Q Consensus 71 plv~~~l~G---~N~tv~aYGqTGSGKTyT 97 (887)
|-+|.++.| ...+++.+|++|||||..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 457788876 588899999999999754
No 380
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.18 E-value=5.3 Score=48.47 Aligned_cols=49 Identities=24% Similarity=0.372 Sum_probs=33.0
Q ss_pred CCCeEEEeeccCCCCcccccCCC---CC----C--C-----CcccchHHHHHHHHHHHHhhcc
Q 002730 79 GYNATVLAYGQTGSGKTYTMGTG---LR----E--G-----FQTGLIPQVMNALFNKIETLRH 127 (887)
Q Consensus 79 G~N~tv~aYGqTGSGKTyTm~g~---~~----~--~-----~~~GiIpr~~~~LF~~i~~~~~ 127 (887)
.....|+-||++|+||||..+-- ++ + + ..-|---..+++||.+....++
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCC
Confidence 34566999999999999986321 00 0 0 1235566789999998877543
No 381
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=54.13 E-value=5.1 Score=42.58 Aligned_cols=15 Identities=40% Similarity=0.620 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|.-.|++|||||+-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999987
No 382
>PRK04195 replication factor C large subunit; Provisional
Probab=54.07 E-value=7.8 Score=45.99 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=22.1
Q ss_pred hhhHHHHHhcCC-CeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~-N~tv~aYGqTGSGKTyTm 98 (887)
+...+.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444555555664 556888999999999887
No 383
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=54.02 E-value=5.3 Score=45.48 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=28.3
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHH-HHhc--CC--CeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--GY--NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~-~~l~--G~--N~tv~aYGqTGSGKTyTm 98 (887)
.++||.|.+-+ ..-+.+.+.+..|+.. ..+. |. ...|+-||++|+|||++.
T Consensus 118 ~~~~~di~Gl~-~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 118 NVSYEDIGGLE-EQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CCCHHHhCChH-HHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 45666666532 2223333333333332 1222 22 345899999999999887
No 384
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=53.98 E-value=6.9 Score=44.69 Aligned_cols=44 Identities=30% Similarity=0.499 Sum_probs=27.6
Q ss_pred EEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCcccc
Q 002730 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYT 97 (887)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyT 97 (887)
-+||.|+| |+.+... ..|+-.-+-.|-=...+-||+.|+|||..
T Consensus 21 ~~lde~vG-----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 21 KSLDEVVG-----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CCHHHhcC-----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 35666664 3444433 33444444456666777899999999975
No 385
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=53.78 E-value=5.5 Score=42.19 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=15.9
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
...++-||.+|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999988
No 386
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=53.50 E-value=20 Score=41.26 Aligned_cols=59 Identities=27% Similarity=0.347 Sum_probs=35.6
Q ss_pred hHHHHHh---cCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehhhHhh
Q 002730 71 PLVDGLF---QGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKEEVRD 147 (887)
Q Consensus 71 plv~~~l---~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE~v~D 147 (887)
.+||.++ .|.-+. -+|+.|+|||. | +..|++.+... ..+..+.|..+.=+.+++.|
T Consensus 158 rvID~l~PIGkGQR~l--IvgppGvGKTT-L----------------aK~Ian~I~~n--hFDv~~~VvLIgER~~EVtd 216 (416)
T PRK09376 158 RIIDLIAPIGKGQRGL--IVAPPKAGKTV-L----------------LQNIANSITTN--HPEVHLIVLLIDERPEEVTD 216 (416)
T ss_pred eeeeeecccccCceEE--EeCCCCCChhH-H----------------HHHHHHHHHhh--cCCeEEEEEEeCCchhHHHH
Confidence 3444443 455554 45899999994 4 35677777653 23344444444446678888
Q ss_pred ccC
Q 002730 148 LLD 150 (887)
Q Consensus 148 LL~ 150 (887)
+..
T Consensus 217 iqr 219 (416)
T PRK09376 217 MQR 219 (416)
T ss_pred HHH
Confidence 874
No 387
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=53.50 E-value=8.6 Score=41.06 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=26.6
Q ss_pred EEEeeccCCCCccccc------CCCCC--CCCcccchHHHHHHHHHHHHh
Q 002730 83 TVLAYGQTGSGKTYTM------GTGLR--EGFQTGLIPQVMNALFNKIET 124 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm------~g~~~--~~~~~GiIpr~~~~LF~~i~~ 124 (887)
+-..+|++|||||.|+ .|-+- -....++=...+..||..+..
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~ 83 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQ 83 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhh
Confidence 3346999999999997 23211 112346667777888877765
No 388
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=53.41 E-value=10 Score=40.39 Aligned_cols=44 Identities=27% Similarity=0.422 Sum_probs=26.6
Q ss_pred EcceeeCCCCCcchhhhhhhhhhHHHHHhc-C-CCeEEEeeccCCCCccccc
Q 002730 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLFQ-G-YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 49 ~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~-G-~N~tv~aYGqTGSGKTyTm 98 (887)
+||.+.| |+.+-.. ...++..+.. | .=..++-||++|.|||+.-
T Consensus 22 ~L~efiG-----Q~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 22 SLDEFIG-----QEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp SCCCS-S------HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred CHHHccC-----cHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 5666664 4555544 5667777653 3 2345778999999997653
No 389
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=53.37 E-value=5.7 Score=46.13 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.0
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 345788999999999877
No 390
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.01 E-value=3.2e+02 Score=29.39 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 605 HKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKK 655 (887)
Q Consensus 605 ~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk 655 (887)
...+.+.+.|..+.++|+.--..+--+.-..-.+|-+.....+.++.|++.
T Consensus 55 ~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a 105 (333)
T KOG1853|consen 55 DQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555443333333333344444555555555555443
No 391
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=52.83 E-value=8.2 Score=45.39 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=19.6
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|..+++|.| |++.++||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3455678988 577789999999875
No 392
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=52.70 E-value=6 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.2
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
+..+-||++|+|||+.|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 44567999999999887
No 393
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=52.43 E-value=9.1 Score=42.63 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=20.2
Q ss_pred hhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+.+++..++.+- ..|+-.|+||||||++|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 345555555443 45566799999999987
No 394
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=52.41 E-value=5.6 Score=38.51 Aligned_cols=15 Identities=53% Similarity=0.853 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
++-||++|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 467999999999987
No 395
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.41 E-value=1.7e+02 Score=32.17 Aligned_cols=56 Identities=23% Similarity=0.324 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002730 572 MQDGHTLKLKALEAQILELKKKQES-----QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQ 627 (887)
Q Consensus 572 l~e~~~~kl~~Le~el~~Lkkk~~~-----~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~ 627 (887)
+++.+-+|+++-|.++.+-.+..-+ +......+.+.|++.+.|.+|+..+.+.|.+
T Consensus 342 ~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~ 402 (406)
T KOG3859|consen 342 MRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTA 402 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544433322222 2233346677788888888888877766654
No 396
>PRK14974 cell division protein FtsY; Provisional
Probab=52.37 E-value=13 Score=42.10 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.1
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
...|.-.|++|+|||+|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467888999999999998
No 397
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=52.07 E-value=8.9 Score=46.13 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=30.6
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+.-+|+.+++.+ . .+..+...++.+....|+-||++|+|||+.-
T Consensus 60 rp~~f~~iiGqs-----~----~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 60 RPKSFDEIIGQE-----E----GIKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CcCCHHHeeCcH-----H----HHHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 456788888742 1 1333444456677778889999999998755
No 398
>PLN02939 transferase, transferring glycosyl groups
Probab=51.81 E-value=3.6e+02 Score=34.95 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhCCCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHh
Q 002730 384 LRQQLKYLQAELCARAGGAP------SDEVQVLKGRIAWLEATNEDLCQELHEYR-----------------SRRAVVEH 440 (887)
Q Consensus 384 l~~~i~~L~~el~~~~~~~~------~~~~~~l~~~~~~l~~~~~~l~~~l~~~~-----------------~~~~~l~~ 440 (887)
|..+++.|+.+|..++.... ..++..++++...|+..+.-|..++.+.. +.+..++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (977)
T PLN02939 199 LEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELES 278 (977)
T ss_pred hHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cccccccC---------CchhhchhhhhhhhcccCCcchhhhhhccCCCChhHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 002730 441 CGTDAQEG---------PVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRL 511 (887)
Q Consensus 441 ~~~~aq~~---------~~~~~Ki~elk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~L 511 (887)
+...+|.. +....|++.|+.-| +...+..+++ .-.-.+-++|.+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~---~~~~~~~~~~~~~~ 333 (977)
T PLN02939 279 KFIVAQEDVSKLSPLQYDCWWEKVENLQDLL----------------------DRATNQVEKA---ALVLDQNQDLRDKV 333 (977)
T ss_pred HHHhhhhhhhhccchhHHHHHHHHHHHHHHH----------------------HHHHHHHHHH---HHHhccchHHHHHH
Q ss_pred HHHHHHHhh------------hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccch
Q 002730 512 EQKESEMKL------------FGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHT 569 (887)
Q Consensus 512 e~KE~~~~~------------~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~ 569 (887)
+.+|+.+++ +.+.....+++++...-.++...++--+.+.++..+.+..+.+++..++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (977)
T PLN02939 334 DKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRS 403 (977)
T ss_pred HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
No 399
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=51.75 E-value=8.5 Score=40.56 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=22.8
Q ss_pred hhHHHHHhcC---CCeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~G---~N~tv~aYGqTGSGKTyTm 98 (887)
-|-+|.++.| ...++.-||++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3556777775 4667889999999999876
No 400
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=51.54 E-value=11 Score=44.51 Aligned_cols=17 Identities=53% Similarity=0.751 Sum_probs=15.2
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 55789999999999988
No 401
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=51.54 E-value=1.7e+02 Score=29.38 Aligned_cols=56 Identities=29% Similarity=0.388 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002730 498 NTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (887)
Q Consensus 498 ~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~ 563 (887)
.++..++.+|...+..+++++..+...-+ ..+|...|..++.|...+...|..+.+
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777776653221 234555555666666666666655543
No 402
>PF13173 AAA_14: AAA domain
Probab=51.42 E-value=6.6 Score=37.45 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.5
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.++-+|+.|+|||+.+
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999998
No 403
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.37 E-value=2.7e+02 Score=34.99 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 499 TMDKELNELNKRLEQKESEMKLFGD-I---DTEALRHHFGKKIMELEEEKRIVQQERDRLL 555 (887)
Q Consensus 499 ~l~~EL~eLnk~Le~KE~~~~~~~~-~---~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll 555 (887)
=++.++.++..+|+..|..+..+-. + +...-.+.+-.++.+|+.++..++....++.
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~ 331 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEIS 331 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776666532 1 1111112222456666666666655544443
No 404
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=51.32 E-value=8.2 Score=39.97 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=18.8
Q ss_pred HHHhcCC---CeEEEeeccCCCCccccc
Q 002730 74 DGLFQGY---NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 74 ~~~l~G~---N~tv~aYGqTGSGKTyTm 98 (887)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4445442 678899999999999775
No 405
>PRK11519 tyrosine kinase; Provisional
Probab=51.06 E-value=3.7e+02 Score=33.70 Aligned_cols=55 Identities=13% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 500 MDKELNELNKRLEQKESEMKLFGD-I---DTEALRHHFGKKIMELEEEKRIVQQERDRL 554 (887)
Q Consensus 500 l~~EL~eLnk~Le~KE~~~~~~~~-~---~~~~lk~~ye~kl~eLe~ei~~lq~Erd~L 554 (887)
+++++.++..+|+..|..+..|.. + +...-.+.+-+.+.+++.++.+++.+..++
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l 330 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777776666532 1 221111122234555555555555444444
No 406
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=51.02 E-value=4.5e+02 Score=30.45 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=67.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-H
Q 002730 600 LLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNK---IKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQ-K 675 (887)
Q Consensus 600 l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kk---mkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q-~ 675 (887)
+..++.+.++++-+|+.++++-.++--.+.-| ++.|++--+..=+.+|-||..|+++.+..--+..+.++.-..- .
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~ 83 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTV 83 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666665554444333332 2455555555556677788888888777666655543322111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002730 676 MVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEHELEVSANVHEVRFKYE 747 (887)
Q Consensus 676 ~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~e~ei~~~v~e~~~~le 747 (887)
+++. +.|+|.+-+++-++...+..+ ..+++-.-.|..++..+.-.+.++...++
T Consensus 84 ~~~~-------~en~~~r~~~eir~~~~q~~e-----------~~n~~~~l~~~~~~~r~~e~la~~~~~l~ 137 (459)
T KOG0288|consen 84 DVLI-------AENLRIRSLNEIRELREQKAE-----------FENAELALREMRRKMRIAERLAEALKDLG 137 (459)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHhhhh-----------hccchhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 2222 344555555544443222211 01223446777777777766666544443
No 407
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=51.02 E-value=6.7e+02 Score=32.43 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHhHHHHH
Q 002730 792 NARMERIASLENMLNMSSKALVEMASQLSEAEE 824 (887)
Q Consensus 792 ~~r~~qi~~le~~l~~~~~~~~~~~~~l~eae~ 824 (887)
+.|.++|..|+..+..-+..+.....++++..+
T Consensus 866 ~~r~~el~~l~~~~~~~~~~le~i~~kl~~~ke 898 (1072)
T KOG0979|consen 866 EVREDELRELETKLEKLSEDLERIKDKLSDVKE 898 (1072)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHhhHHH
Confidence 577788888888888777777777777776544
No 408
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=50.94 E-value=7.3 Score=44.21 Aligned_cols=41 Identities=27% Similarity=0.492 Sum_probs=29.6
Q ss_pred CCeEEEeeccCCCCcccccCCCCCCCCcccchHHHHHHHHHHHHhhcccceEEEEEeeeeeehh
Q 002730 80 YNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQVMNALFNKIETLRHQMEFQLHVSFIEILKE 143 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~~~~LF~~i~~~~~~~~~~v~vS~~EIynE 143 (887)
+-.-|+-||.+||||||+. +.+|+... .-.|.++++|-|.=
T Consensus 29 ~PS~~~iyG~sgTGKT~~~-----------------r~~l~~~n------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLV-----------------RQLLRKLN------LENVWLNCVECFTY 69 (438)
T ss_pred cceeEEEeccCCCchhHHH-----------------HHHHhhcC------CcceeeehHHhccH
Confidence 3445689999999999998 45565541 23588888888853
No 409
>PRK10865 protein disaggregation chaperone; Provisional
Probab=50.92 E-value=12 Score=47.64 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred cceeeCCCCCcchhhhhhhhhhHHHHHhcCCC------eEEEeeccCCCCcccc
Q 002730 50 FDHVYGNGGSPSSAMFGECVAPLVDGLFQGYN------ATVLAYGQTGSGKTYT 97 (887)
Q Consensus 50 FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N------~tv~aYGqTGSGKTyT 97 (887)
+.+|+| |+..-.. +...|..+..|.+ +.++-+|+||+|||++
T Consensus 567 ~~~viG-----Q~~ai~~-l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~l 614 (857)
T PRK10865 567 HHRVIG-----QNEAVEA-VSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTEL 614 (857)
T ss_pred CCeEeC-----CHHHHHH-HHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHH
No 410
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=50.88 E-value=7.3 Score=42.72 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=19.3
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|++.+|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999877
No 411
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=50.77 E-value=6.5 Score=42.40 Aligned_cols=12 Identities=58% Similarity=0.880 Sum_probs=11.3
Q ss_pred eccCCCCccccc
Q 002730 87 YGQTGSGKTYTM 98 (887)
Q Consensus 87 YGqTGSGKTyTm 98 (887)
.|++|||||+||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 599999999998
No 412
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=50.64 E-value=4.3e+02 Score=30.15 Aligned_cols=19 Identities=5% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002730 842 GDAKNLLQYMFNVAAETRY 860 (887)
Q Consensus 842 ~eAk~~l~~l~~~~~~~r~ 860 (887)
.+-+.++++||.-.....-
T Consensus 399 ~~~~~~~~~~l~~~~~~~~ 417 (423)
T TIGR01843 399 TGERTVIEYLLKPITDSVQ 417 (423)
T ss_pred eCCccHHHHHHHHHHHHHH
Confidence 4667777888776665543
No 413
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=50.57 E-value=2.9e+02 Score=28.55 Aligned_cols=22 Identities=36% Similarity=0.447 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002730 610 AAKRLQAEIQSIKAQKVQLQNK 631 (887)
Q Consensus 610 ~~~~L~~Ei~~mK~~kv~L~kk 631 (887)
..+.+.+||..+|.+-.+|-.+
T Consensus 164 ~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 164 EEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666654444333
No 414
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=50.36 E-value=2.8e+02 Score=28.77 Aligned_cols=77 Identities=26% Similarity=0.464 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002730 537 IMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQA 616 (887)
Q Consensus 537 l~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~ 616 (887)
+-.+...-..+..+++.+...+... .-.....+..+.+|+..|.+|+.. .+.+-..++..+..|.+|+.
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~--------~~~~~~~e~~i~~Le~ki~el~~~---~~~~~~~ke~~~~ei~~lks 166 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEK--------EAELKELESEIKELEMKILELQRQ---AAKLKEKKEAKDKEISRLKS 166 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555554432 011223344555555555444422 22344567777777888877
Q ss_pred HHHHHHHH
Q 002730 617 EIQSIKAQ 624 (887)
Q Consensus 617 Ei~~mK~~ 624 (887)
++..|+..
T Consensus 167 ~~~~l~~~ 174 (190)
T PF05266_consen 167 EAEALKEE 174 (190)
T ss_pred HHHHHHHH
Confidence 77777644
No 415
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=49.93 E-value=4.1e+02 Score=29.68 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 574 DGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKL 653 (887)
Q Consensus 574 e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qL 653 (887)
+...+|++.||.+-..|+. +..+|...-...|++-..|=.++ ++++. .....=+....||+.-
T Consensus 163 e~Lq~Klk~LEeEN~~LR~---Ea~~L~~et~~~EekEqqLv~dc----------v~QL~----~An~qia~LseELa~k 225 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRS---EASQLKTETDTYEEKEQQLVLDC----------VKQLS----EANQQIASLSEELARK 225 (306)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhhHHHhhccHHHHHHHHHH----------HHHhh----hcchhHHHHHHHHHHH
Confidence 5566788888887766664 23333333333444333332222 12222 2222223456677777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002730 654 KKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSA 703 (887)
Q Consensus 654 kk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~ 703 (887)
..+..+.+.+|.+|.++ -.-|++|....++.+.-|...|..-|.++
T Consensus 226 ~Ee~~rQQEEIt~Llsq----ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQ----IVDLQQRCKQLAAENEELQQHLQASKESQ 271 (306)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 77777777777777753 33355666666777777776666544333
No 416
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=49.82 E-value=3.2e+02 Score=28.38 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002730 530 RHHFGKKIMELEEEKRIVQQERDRLLAEIENLA 562 (887)
Q Consensus 530 k~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~ 562 (887)
.++...+|..|+++...+..|++.+......+.
T Consensus 97 ~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 97 QQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 344446666666666666666666665555543
No 417
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=49.52 E-value=15 Score=42.99 Aligned_cols=18 Identities=44% Similarity=0.575 Sum_probs=16.0
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
...|+-+|.+|||||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999998
No 418
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=49.51 E-value=11 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.1
Q ss_pred HHhcCCCeEEEeeccCCCCccccc
Q 002730 75 GLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 75 ~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.-..+-+.-++-||+.|||||.||
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHH
Confidence 334567778999999999999999
No 419
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.49 E-value=6e+02 Score=31.45 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 002730 575 GHTLKLKALEAQILELKKKQ 594 (887)
Q Consensus 575 ~~~~kl~~Le~el~~Lkkk~ 594 (887)
....+++.++.++.++.++.
T Consensus 395 ~~~~~~~~~e~el~~l~~~l 414 (650)
T TIGR03185 395 QLLKELRELEEELAEVDKKI 414 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665544
No 420
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.44 E-value=11 Score=44.77 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=27.0
Q ss_pred eEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCC-CeEEEeeccCCCCccccc
Q 002730 47 SFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGY-NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 47 ~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~-N~tv~aYGqTGSGKTyTm 98 (887)
.-+||.|+++ +.+ +..+...+-.|. ...++-||++|+|||++.
T Consensus 10 P~~~~divGq-----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 10 PKTFSEVVGQ-----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CCCHHHccCc-----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3467777763 222 333333333443 345788999999999886
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.43 E-value=7.1 Score=45.57 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=14.2
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+-.|+||+|||+|+
T Consensus 223 ~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 223 VVALVGPTGVGKTTTL 238 (424)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667799999999998
No 422
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=49.35 E-value=6.9 Score=38.13 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+..|.+|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999998875
No 423
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=49.32 E-value=13 Score=40.42 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=21.1
Q ss_pred hhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 67 ECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 67 ~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.++..++..+..|.+. +-+|++|+|||+..
T Consensus 9 ~l~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 4455555656666654 56899999998766
No 424
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=49.24 E-value=25 Score=42.38 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.9
Q ss_pred cCCCcEEEcCceEEEcCCHHHHHHHHHhccccc
Q 002730 180 SSNGVITLAGSTEVAVNTLQEMAACLEQGSLSR 212 (887)
Q Consensus 180 ~~~~~~~v~glte~~V~s~~e~~~~l~~g~~~R 212 (887)
..+|.+++.++.+.+..--..++.+|+.+.-.|
T Consensus 321 A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r 353 (538)
T PRK15424 321 AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR 353 (538)
T ss_pred cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe
Confidence 345678888888888877778888888775544
No 425
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.95 E-value=11 Score=44.60 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=19.1
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|..++.|.|+ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 45567889874 56679999999764
No 426
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=48.67 E-value=10 Score=47.15 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=26.1
Q ss_pred hhhhhhhhhhHHHHH-hcCCCeEEEeeccCCCCccccc
Q 002730 62 SAMFGECVAPLVDGL-FQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 62 ~~vy~~~v~plv~~~-l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..||..+ ......+ -.|-|-||+..|.+|||||+|+
T Consensus 66 PHif~~a-~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVA-QRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHH-HHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhh-hcccccccccccccceeeccccccccccch
Confidence 3556443 3333333 3689999999999999999998
No 427
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.65 E-value=6.6 Score=44.21 Aligned_cols=119 Identities=21% Similarity=0.330 Sum_probs=66.6
Q ss_pred CceEEEEEeCCCCchhh-ccCCceEEE--------EeCCC--cceee----cceeEEcceeeCCCCCcchhhhhhhhhhH
Q 002730 8 CSVKVAVHVRPLIGDER-AQGCKECVA--------VTHGN--PQVQI----GTHSFTFDHVYGNGGSPSSAMFGECVAPL 72 (887)
Q Consensus 8 ~~v~V~vRvRP~~~~E~-~~~~~~~~~--------~~~~~--~~v~~----~~~~F~FD~Vf~~~~s~q~~vy~~~v~pl 72 (887)
+.-+.+|++.|...++. ..|+..++. +.|.+ |.|.. ..-.-+|+.|=|= ..+-+++.+.+.-||
T Consensus 93 ~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL-~~Qi~EirE~VELPL 171 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGL-DEQIQEIREVVELPL 171 (406)
T ss_pred CCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCH-HHHHHHHHHHhcccc
Confidence 34577889999887664 345544432 22222 22211 0123455555442 234466777776777
Q ss_pred HH-HHhc--CCC--eEEEeeccCCCCccccc-----CCC--C----CC---CCcccchHHHHHHHHHHHHhhcc
Q 002730 73 VD-GLFQ--GYN--ATVLAYGQTGSGKTYTM-----GTG--L----RE---GFQTGLIPQVMNALFNKIETLRH 127 (887)
Q Consensus 73 v~-~~l~--G~N--~tv~aYGqTGSGKTyTm-----~g~--~----~~---~~~~GiIpr~~~~LF~~i~~~~~ 127 (887)
.. .+|. |.. -.|+-||+.|+|||-.- .++ | ++ ...-|==+|.+++||.......+
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 64 4443 554 35899999999998643 000 0 00 01124448999999998877544
No 428
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=48.60 E-value=4.1e+02 Score=29.51 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHH
Q 002730 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKR 545 (887)
Q Consensus 500 l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~ 545 (887)
|..|++.|..+|+.-|...+.- .+|++.|.-++..||+-.+
T Consensus 120 lQgEmQ~LrDKLAiaERtAkaE-----aQLkeK~klRLK~LEe~Lk 160 (351)
T PF07058_consen 120 LQGEMQQLRDKLAIAERTAKAE-----AQLKEKLKLRLKVLEEGLK 160 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcc
Confidence 4567778888888877766542 3677778777877776654
No 429
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.94 E-value=7.6 Score=45.93 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|.-.|+||+|||+|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 46777899999999998
No 430
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=47.84 E-value=11 Score=39.67 Aligned_cols=28 Identities=43% Similarity=0.576 Sum_probs=21.3
Q ss_pred hHHHHHhc-C--CCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQ-G--YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~-G--~N~tv~aYGqTGSGKTyTm 98 (887)
|-+|.++. | .+++++.+|++|||||...
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 44567774 4 4788999999999997654
No 431
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=47.83 E-value=8 Score=39.03 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+.+|++|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999863
No 432
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=47.81 E-value=2.6e+02 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 534 GKKIMELEEEKRIVQQERDRLLAEIEN 560 (887)
Q Consensus 534 e~kl~eLe~ei~~lq~Erd~Ll~~l~~ 560 (887)
..||++-+.++..-+.|+++|..+|..
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 367777777777777777777777654
No 433
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=47.53 E-value=10 Score=42.87 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=0.0
Q ss_pred cCCCeEEEeeccCCCCccccc
Q 002730 78 QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 78 ~G~N~tv~aYGqTGSGKTyTm 98 (887)
.|+.-+|++.|+.|+|||..+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
No 434
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.44 E-value=8.3 Score=40.67 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.3
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999877
No 435
>PRK07261 topology modulation protein; Provisional
Probab=47.03 E-value=8.4 Score=38.96 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+..|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999766
No 436
>PRK00131 aroK shikimate kinase; Reviewed
Probab=46.97 E-value=8.7 Score=38.10 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36889999999999874
No 437
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=46.93 E-value=5.8e+02 Score=30.56 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHhcccccccCCchhhchhhhhhhhcccCCcchhhhhhcc
Q 002730 405 DEVQVLKGRIAWLEATNEDLC-------QELHEYRSRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVS 477 (887)
Q Consensus 405 ~~~~~l~~~~~~l~~~~~~l~-------~~l~~~~~~~~~l~~~~~~aq~~~~~~~Ki~elk~~L~~~~~~~~~~~~~~~ 477 (887)
..++...++|+.|+.+.+... ..|+....+++.+.......+...............-..-..+....++...
T Consensus 309 qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLekevak~~v~~s~~e~~~l~~~~e~~se~s~~~~~e~~~ 388 (518)
T PF10212_consen 309 QQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQSVDEPLQ 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhhcccccccccccccccccccc
Q ss_pred -------------CCCChhHHHHHHHHhHHH-HHhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHH
Q 002730 478 -------------DGNSSEIEEVAKEWEHAL-WQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEE 543 (887)
Q Consensus 478 -------------~~~~~~~~~~~~e~e~~~-~q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~e 543 (887)
.+.+++...+..=+.|-. .-++|-.+++..+.+..-..++.+.+. .++...+.+
T Consensus 389 ~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~------------~rL~~aE~e 456 (518)
T PF10212_consen 389 PTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVHFYAECRALQ------------KRLESAEKE 456 (518)
T ss_pred cccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002730 544 KRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIK 622 (887)
Q Consensus 544 i~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK 622 (887)
...+..|...+..++..+. +.....+-.|+..|+.|-..|..|. +++..-.+||+.+|
T Consensus 457 k~~l~eeL~~a~~~i~~Lq----DEL~TTr~NYE~QLs~MSEHLasmN-----------------eqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 457 KESLEEELKEANQNISRLQ----DELETTRRNYEEQLSMMSEHLASMN-----------------EQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHh
No 438
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=46.91 E-value=14 Score=40.24 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=16.8
Q ss_pred CCeEEEeeccCCCCccccc
Q 002730 80 YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 80 ~N~tv~aYGqTGSGKTyTm 98 (887)
.-+||++.|-.|||||+.|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 3569999999999999877
No 439
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=46.85 E-value=11 Score=46.43 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=19.5
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455677876 678889999999876
No 440
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=46.85 E-value=21 Score=38.71 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=25.5
Q ss_pred EEEeeccCCCCccccc-----CCCCC-CCCcccchHHHHHHHH
Q 002730 83 TVLAYGQTGSGKTYTM-----GTGLR-EGFQTGLIPQVMNALF 119 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm-----~g~~~-~~~~~GiIpr~~~~LF 119 (887)
.|+.-|.+|||||..+ .|=|. +.-.+.++|.+++-+.
T Consensus 3 lvIVTGlSGAGKsvAl~~lEDlGyycvDNLPp~Llp~~~~~~~ 45 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLEDLGYYCVDNLPPQLLPKLADLML 45 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHhcCeeeecCCCHHHHHHHHHHHh
Confidence 3678899999999987 23232 3345678888777443
No 441
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=46.77 E-value=5.7e+02 Score=30.44 Aligned_cols=74 Identities=26% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 609 EAAKRLQAEIQSIKAQKVQLQNKIKQEAEQFRQWKASREKELLKLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAA 686 (887)
Q Consensus 609 ~~~~~L~~Ei~~mK~~kv~L~kkmkee~~~~r~~k~~~~kEi~qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~ 686 (887)
....++.+|+..|-++=|.+.+++|.=...... +.--+...+..+|....|.+.|+.++.---..|-.--||+.
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekee----l~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEE----LDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555543322221 11122233445555666666666655555555554444443
No 442
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.77 E-value=7.3 Score=43.65 Aligned_cols=17 Identities=47% Similarity=0.643 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 35778999999999988
No 443
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=46.67 E-value=8.4 Score=45.04 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=35.9
Q ss_pred HhcCCCeEEEeeccCCCCcccccCCCCC--------------C----CCcccchH--HHHHHHHHHHHhhcccceEEEEE
Q 002730 76 LFQGYNATVLAYGQTGSGKTYTMGTGLR--------------E----GFQTGLIP--QVMNALFNKIETLRHQMEFQLHV 135 (887)
Q Consensus 76 ~l~G~N~tv~aYGqTGSGKTyTm~g~~~--------------~----~~~~GiIp--r~~~~LF~~i~~~~~~~~~~v~v 135 (887)
+.+|.+. +|++|||||||+....+.- . +...++.| -.+..||+.... ..|.-.+
T Consensus 108 i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k----~~~~s~~ 181 (482)
T KOG0335|consen 108 ISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK----FSYLSGM 181 (482)
T ss_pred eecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh----hcccccc
Confidence 3455554 8999999999998733210 0 01112222 145677766544 3456666
Q ss_pred eeeeeehh
Q 002730 136 SFIEILKE 143 (887)
Q Consensus 136 S~~EIynE 143 (887)
-.+.+|+.
T Consensus 182 ~~~~~ygg 189 (482)
T KOG0335|consen 182 KSVVVYGG 189 (482)
T ss_pred eeeeeeCC
Confidence 66777865
No 444
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=46.66 E-value=11 Score=46.22 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.3
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.++..|++|||||||+
T Consensus 175 ~~lI~GpPGTGKT~t~ 190 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTL 190 (637)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4668999999999998
No 445
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=46.53 E-value=16 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=21.6
Q ss_pred hhhhhhhhhHHHHHhc-CCCeEEEeeccCCCCccccc
Q 002730 63 AMFGECVAPLVDGLFQ-GYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 63 ~vy~~~v~plv~~~l~-G~N~tv~aYGqTGSGKTyTm 98 (887)
.+|...+..+...+-. |..-.|.-.|++|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 3444444433333222 44556666799999999877
No 446
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=46.52 E-value=16 Score=40.93 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|.-.|++|+|||+|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46677799999999998
No 447
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=46.48 E-value=13 Score=39.31 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=22.5
Q ss_pred hhhHHHHHhc-CC--CeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l~-G~--N~tv~aYGqTGSGKTyTm 98 (887)
.-|-+|.++. |+ ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 3455677775 43 678888999999998765
No 448
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=46.38 E-value=12 Score=42.50 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.4
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 44567888878888999999999874
No 449
>PRK08118 topology modulation protein; Reviewed
Probab=46.37 E-value=8.7 Score=38.72 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.5
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+..|++|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999543
No 450
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=46.23 E-value=12 Score=42.40 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=29.8
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..|.|+.|-+. +++ ...|+..+.+..-+.|+.+|.+||||||++
T Consensus 12 ~~~pf~~ivGq-----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVGQ-----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhCh-----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 37899998863 333 333444444433346789999999999988
No 451
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.09 E-value=3.6e+02 Score=27.90 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 533 FGKKIMELEEEKRIVQQERDRLLAEI 558 (887)
Q Consensus 533 ye~kl~eLe~ei~~lq~Erd~Ll~~l 558 (887)
|..=+.||=-++.--=.||-.|+..+
T Consensus 64 y~~~F~ELIRQVTi~C~ERGlLL~rv 89 (189)
T PF10211_consen 64 YSQCFDELIRQVTIDCPERGLLLLRV 89 (189)
T ss_pred HHHHHHHHHHHHHhCcHHHhHHHHHH
Confidence 44444444444443344454454443
No 452
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=46.03 E-value=32 Score=26.90 Aligned_cols=29 Identities=28% Similarity=0.610 Sum_probs=20.8
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 529 LRHHF---GKKIMELEEEKRIVQQERDRLLAE 557 (887)
Q Consensus 529 lk~~y---e~kl~eLe~ei~~lq~Erd~Ll~~ 557 (887)
+.+|| ++|+..+.++|..||+.|..|..+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 44444 589999999999999999888765
No 453
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=45.87 E-value=14 Score=38.71 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=22.1
Q ss_pred hhHHHHHhc-CC--CeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~-G~--N~tv~aYGqTGSGKTyTm 98 (887)
-|-+|.++. |+ ...++.||.+|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 355777775 43 557789999999999876
No 454
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=45.86 E-value=10 Score=42.95 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=31.2
Q ss_pred EEcceeeCCCCCcchhhhhhhhhhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 48 FTFDHVYGNGGSPSSAMFGECVAPLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 48 F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
|.|..|.+ |+. ....++-.+++..-+-|+-.|.+|+|||..+
T Consensus 1 ~pf~~ivg-----q~~----~~~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 1 FPFTAIVG-----QDE----MKLALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred CCcccccc-----HHH----HHHHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 56777775 333 3556667777777777889999999999887
No 455
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.67 E-value=14 Score=42.06 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=26.3
Q ss_pred EcceeeCCCCCcchhhhhhhhhhHHHHHhcC-CCeEEEeeccCCCCccccc
Q 002730 49 TFDHVYGNGGSPSSAMFGECVAPLVDGLFQG-YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 49 ~FD~Vf~~~~s~q~~vy~~~v~plv~~~l~G-~N~tv~aYGqTGSGKTyTm 98 (887)
+||.|.|. +.+ +..+...+-.| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiGq-----~~~----~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIGQ-----KHI----VTAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccCh-----HHH----HHHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 56666642 222 33344444444 4567889999999999877
No 456
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=45.63 E-value=11 Score=45.15 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.3
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
-..+-.||+|+|||||+
T Consensus 202 ~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CceEeeCCCCCCceeeH
Confidence 34566799999999998
No 457
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=45.54 E-value=6.1e+02 Score=30.43 Aligned_cols=25 Identities=12% Similarity=-0.016 Sum_probs=11.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 002730 570 QKMQDGHTLKLKALEAQILELKKKQ 594 (887)
Q Consensus 570 ~Kl~e~~~~kl~~Le~el~~Lkkk~ 594 (887)
....-.|-++...++.....|....
T Consensus 179 ~~~~~~fl~rtl~~e~~~~~L~~~~ 203 (511)
T PF09787_consen 179 ITAVVEFLKRTLKKEIERQELEERP 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455555555554444444333
No 458
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.45 E-value=3.8e+02 Score=28.45 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhh
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKM 572 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl 572 (887)
....-++++|..++.|.+-+...++-++.+.++...-+
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44566788888888888888877766655554333333
No 459
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=45.39 E-value=14 Score=38.57 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=22.3
Q ss_pred hhHHHHHhc-CC--CeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQ-GY--NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~-G~--N~tv~aYGqTGSGKTyTm 98 (887)
-|-+|.++. |+ ...+.-||++|||||..+
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 456778775 43 456788999999999876
No 460
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.28 E-value=3.1e+02 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002730 536 KIMELEEEKRIVQQERDRLLAE 557 (887)
Q Consensus 536 kl~eLe~ei~~lq~Erd~Ll~~ 557 (887)
++-.|+.++...+.+...+..+
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~d 46 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILD 46 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444444444333
No 461
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.20 E-value=8.2 Score=43.15 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.3
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
..+|+-.|.||||||++|
T Consensus 143 ~~siii~G~t~sGKTt~l 160 (312)
T COG0630 143 RKSIIICGGTASGKTTLL 160 (312)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 345678899999999999
No 462
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.07 E-value=6e+02 Score=30.23 Aligned_cols=164 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002730 484 IEEVAKEWEHALWQNTMDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAA 563 (887)
Q Consensus 484 ~~~~~~e~e~~~~q~~l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~ 563 (887)
........+..........+.+.++.++.........+. .....+....+..-...++++..++.-+++|-.++.+++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 42 VAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLE-ADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred c-CccchhhhhhhHHHHH----HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 564 N-SDGHTQKMQDGHTLKL----KALEAQILELKKKQES-QVELLKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (887)
Q Consensus 564 ~-~~~~~~Kl~e~~~~kl----~~Le~el~~Lkkk~~~-~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~ 637 (887)
. -+.+.+++.+.....| +=|..+|...+++..+ +..-.+.......+|+.|..-=..|-..=..|.+.+|-+.+
T Consensus 121 ~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K 200 (475)
T PRK10361 121 RIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNK 200 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q ss_pred HHHHH-HHHHHH
Q 002730 638 QFRQW-KASREK 648 (887)
Q Consensus 638 ~~r~~-k~~~~k 648 (887)
-.-.| +...++
T Consensus 201 ~rG~WGE~qLer 212 (475)
T PRK10361 201 TQGNWGEVVLTR 212 (475)
T ss_pred cCcchHHHHHHH
No 463
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=44.92 E-value=24 Score=39.22 Aligned_cols=113 Identities=21% Similarity=0.317 Sum_probs=68.3
Q ss_pred EEEeCCCCchhh-ccCCceEEEEe--------CCCcce-----eecceeEEcceeeCCCCCcchhhhhhhhhhHHHHHh-
Q 002730 13 AVHVRPLIGDER-AQGCKECVAVT--------HGNPQV-----QIGTHSFTFDHVYGNGGSPSSAMFGECVAPLVDGLF- 77 (887)
Q Consensus 13 ~vRvRP~~~~E~-~~~~~~~~~~~--------~~~~~v-----~~~~~~F~FD~Vf~~~~s~q~~vy~~~v~plv~~~l- 77 (887)
.|+||--.+++. ..|......++ |.+.-+ .-+...++||+|-+- ..+-.++-+.+.-||+...+
T Consensus 80 vvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl-~~qirelre~ielpl~np~lf 158 (388)
T KOG0651|consen 80 VVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGL-FYQIRELREVIELPLTNPELF 158 (388)
T ss_pred EEEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCCh-HHHHHHHHhheEeeccCchhc
Confidence 388888777664 33433333222 111111 113467899998874 23344566666778886553
Q ss_pred c--CCC--eEEEeeccCCCCccc-------ccCCCCC-------CCCcccchHHHHHHHHHHHHhhc
Q 002730 78 Q--GYN--ATVLAYGQTGSGKTY-------TMGTGLR-------EGFQTGLIPQVMNALFNKIETLR 126 (887)
Q Consensus 78 ~--G~N--~tv~aYGqTGSGKTy-------Tm~g~~~-------~~~~~GiIpr~~~~LF~~i~~~~ 126 (887)
. |.. --++-||+.|+|||+ ||+-+|- .....|=-.|.+++-|.......
T Consensus 159 ~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 159 LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI 225 (388)
T ss_pred cccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC
Confidence 3 332 247889999999998 4544432 12345777899999999887643
No 464
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=44.89 E-value=9.1 Score=37.23 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
+|+.+|.+|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999875
No 465
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=44.88 E-value=14 Score=41.46 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=19.2
Q ss_pred hhHHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 70 APLVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 70 ~plv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
..++.++.. +.-|+-+|++|+|||...
T Consensus 55 ~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 55 KAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 334445443 455888999999998776
No 466
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.86 E-value=3.4e+02 Score=34.53 Aligned_cols=88 Identities=16% Similarity=0.067 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHH-HHHHHHhh
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKK-------QESQV-ELLKQKHK 606 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk-------~~~~~-~l~k~k~~ 606 (887)
.+...|.-+...+.+.+++......... .......+++++|+.+...|+.++.+++.. ...-. ...++.+.
T Consensus 467 ~~q~~ls~el~el~k~l~~Ke~l~rr~~-~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~ee 545 (913)
T KOG0244|consen 467 QKQGSLSGELSELEKRLAEKEPLTRRKA-YEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEE 545 (913)
T ss_pred HHHhhhhHHHHHHHhhhccccHHHHHHH-HhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhH
Confidence 3344455555555555554444433322 123356788999999999988888776532 22222 24456677
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002730 607 SDEAAKRLQAEIQSIKA 623 (887)
Q Consensus 607 ~e~~~~~L~~Ei~~mK~ 623 (887)
..++++.|..+|..+|.
T Consensus 546 r~qklk~le~q~s~lkk 562 (913)
T KOG0244|consen 546 RVQKLKSLETQISLLKK 562 (913)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888888774
No 467
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=44.83 E-value=17 Score=45.54 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=16.0
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
.++++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999987
No 468
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=44.59 E-value=27 Score=41.58 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=21.4
Q ss_pred hHHHHHhcC---CCeEEEeeccCCCCccccc
Q 002730 71 PLVDGLFQG---YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 71 plv~~~l~G---~N~tv~aYGqTGSGKTyTm 98 (887)
|=+|.++.| .+.+++.+|++|||||..-
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la 38 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFS 38 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 445677764 4788999999999998543
No 469
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.52 E-value=9.1 Score=44.13 Aligned_cols=17 Identities=47% Similarity=0.638 Sum_probs=15.4
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|+-.|+||+|||+|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 56788899999999999
No 470
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.48 E-value=14 Score=46.17 Aligned_cols=17 Identities=47% Similarity=0.733 Sum_probs=14.9
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|+-||++|||||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46889999999999876
No 471
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=44.38 E-value=8.5 Score=44.31 Aligned_cols=16 Identities=50% Similarity=0.764 Sum_probs=12.4
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999877
No 472
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.38 E-value=9.6 Score=43.71 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=14.8
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|+-.|++|+|||+|+
T Consensus 207 ~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 207 RIISLIGQTGVGKTTTL 223 (407)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999999
No 473
>CHL00176 ftsH cell division protein; Validated
Probab=44.32 E-value=9 Score=47.03 Aligned_cols=17 Identities=41% Similarity=0.559 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999987
No 474
>CHL00181 cbbX CbbX; Provisional
Probab=44.31 E-value=9.1 Score=42.24 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999876
No 475
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=44.18 E-value=5.5e+02 Score=29.54 Aligned_cols=180 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHHhhhhCC------------CChHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002730 366 IQNKPVVNRDLISSDMQKLRQQLKYLQAELCARAGG------------APSDEVQVLKGRIAWL-EATNEDLCQELHEYR 432 (887)
Q Consensus 366 Ikn~p~vn~d~~~~~i~~l~~~i~~L~~el~~~~~~------------~~~~~~~~l~~~~~~l-~~~~~~l~~~l~~~~ 432 (887)
|...|........+.+..|..+|..|..-+.. ... .-.+-+..|..++..| ....+.+..++..+.
T Consensus 196 l~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~-~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~ 274 (388)
T PF04912_consen 196 LYYPPEQAKSQQLARAADLEKRLARLESALGI-DSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLL 274 (388)
T ss_pred eecCcccchhhHHHHHHHHHHHHHHHHHHhCC-CccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHhcccccccCCchhhchhhhhhhhcccCCcchhhhhhccCCCChhHHHHHHHHhHHHHHhhHHHHHHHHHHHHH
Q 002730 433 SRRAVVEHCGTDAQEGPVSFVKSDGLKRGFQSIDSSDYQMDEAVSDGNSSEIEEVAKEWEHALWQNTMDKELNELNKRLE 512 (887)
Q Consensus 433 ~~~~~l~~~~~~aq~~~~~~~Ki~elk~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~q~~l~~EL~eLnk~Le 512 (887)
..+..+.+.............||.+|=+.+..+ ..+..-|=.|-.+|.
T Consensus 275 ~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~--------------------------------~~~~~~lP~lv~RL~ 322 (388)
T PF04912_consen 275 SELEELAEKRKEAKEDAEQESKIDELYEILPRW--------------------------------DPYAPSLPSLVERLK 322 (388)
T ss_pred HHHHHHHhccccccccccchhHHHHHHHHHHHH--------------------------------HHHhhhhhHHHHHHH
Q ss_pred HHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHH
Q 002730 513 QKESEMKLFGDIDTEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELK 591 (887)
Q Consensus 513 ~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lk 591 (887)
.+..++.... +|...+..|+.....++.+.......|..+...-..+...+ ...++.|+..|..|+
T Consensus 323 tL~~lH~~a~---------~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i----~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 323 TLKSLHEEAA---------EFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETI----EKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhccC
No 476
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=44.15 E-value=21 Score=43.67 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=14.7
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
.-++.+|+||||||.++
T Consensus 159 ~hvLviapTgSGKg~g~ 175 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF 175 (606)
T ss_pred ceEEEEcCCCCCcceEE
Confidence 35789999999999887
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=43.98 E-value=11 Score=35.43 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=14.1
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
..+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34566899999999988
No 478
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.96 E-value=20 Score=42.62 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=14.8
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
..-|+|+++||||||+..
T Consensus 173 ~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 173 KRDVLACAPTGSGKTLAF 190 (593)
T ss_pred ccceEEeccCCCcchhhh
Confidence 344699999999998776
No 479
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=43.90 E-value=9.4 Score=44.58 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=21.2
Q ss_pred HHhcCCCeEEEeeccCCCCcccccCCCCCCCCcccchHHH
Q 002730 75 GLFQGYNATVLAYGQTGSGKTYTMGTGLREGFQTGLIPQV 114 (887)
Q Consensus 75 ~~l~G~N~tv~aYGqTGSGKTyTm~g~~~~~~~~GiIpr~ 114 (887)
.+..|-| +|-||+.|||||.+. .--+||+|-.
T Consensus 194 AAAGgHn--Ll~~GpPGtGKTmla------~Rl~~lLPpl 225 (490)
T COG0606 194 AAAGGHN--LLLVGPPGTGKTMLA------SRLPGLLPPL 225 (490)
T ss_pred HHhcCCc--EEEecCCCCchHHhh------hhhcccCCCC
Confidence 3334555 577999999999886 2235666643
No 480
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.90 E-value=13 Score=45.25 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.3
Q ss_pred HHHHhcCCCeEEEeeccCCCCccccc
Q 002730 73 VDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 73 v~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
|..+++|.| |++.++||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 455788998 566789999999876
No 481
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.88 E-value=4.8e+02 Score=33.09 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 607 SDEAAKRLQAEIQSIKAQKVQLQNKIKQEAE 637 (887)
Q Consensus 607 ~e~~~~~L~~Ei~~mK~~kv~L~kkmkee~~ 637 (887)
.++....|..+...++..|-+++.+.+++++
T Consensus 541 ~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~ 571 (771)
T TIGR01069 541 QEKLKKELEQEMEELKERERNKKLELEKEAQ 571 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555544
No 482
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=43.85 E-value=3.7e+02 Score=27.37 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHH
Q 002730 500 MDKELNELNKRLEQKESEMKLFGDIDTEALRHHFGKKIMELEEEKRI 546 (887)
Q Consensus 500 l~~EL~eLnk~Le~KE~~~~~~~~~~~~~lk~~ye~kl~eLe~ei~~ 546 (887)
|+++......+|.-..+-...+...|.++....|++...+.....+-
T Consensus 128 L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krm 174 (201)
T KOG4603|consen 128 LKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRM 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455554444444445456667777788888877766663
No 483
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.82 E-value=24 Score=39.72 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.2
Q ss_pred HHHHHhcCCCeEEEeeccCCCCcccccCC
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTMGT 100 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm~g 100 (887)
+|..++.|.+| +.+..||||||..+-.
T Consensus 37 cIpkILeGrdc--ig~AkTGsGKT~AFaL 63 (442)
T KOG0340|consen 37 CIPKILEGRDC--IGCAKTGSGKTAAFAL 63 (442)
T ss_pred hhHHHhccccc--ccccccCCCcchhhhH
Confidence 45667889997 5677999999998843
No 484
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=43.58 E-value=10 Score=44.14 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.7
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
+..|...|+||+|||+|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356778899999999999
No 485
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=43.52 E-value=10 Score=38.27 Aligned_cols=16 Identities=25% Similarity=0.538 Sum_probs=14.1
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
.|+..|++|||||+++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999987
No 486
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=43.47 E-value=9.3 Score=45.52 Aligned_cols=51 Identities=31% Similarity=0.424 Sum_probs=28.3
Q ss_pred eeEEcceeeCCCCCcchhhhhhhhhhHHH-HHhc--C--CCeEEEeeccCCCCccccc
Q 002730 46 HSFTFDHVYGNGGSPSSAMFGECVAPLVD-GLFQ--G--YNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 46 ~~F~FD~Vf~~~~s~q~~vy~~~v~plv~-~~l~--G--~N~tv~aYGqTGSGKTyTm 98 (887)
..++||.|.+.+.. ...+. ..+..+-. ..+. | ..-.|+-||++|||||+..
T Consensus 50 ~~~~~~di~g~~~~-k~~l~-~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEA-KEELM-EIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHH-HHHHH-HHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 36788888875322 22222 22222111 0111 2 2335888999999999987
No 487
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=43.42 E-value=10 Score=38.49 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998765
No 488
>PRK06696 uridine kinase; Validated
Probab=43.34 E-value=18 Score=38.04 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=20.9
Q ss_pred hhhHHHHHh---cCCCeEEEeeccCCCCccccc
Q 002730 69 VAPLVDGLF---QGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 69 v~plv~~~l---~G~N~tv~aYGqTGSGKTyTm 98 (887)
+..|.+.++ .|....|...|.+|||||+.-
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 444555554 355667777899999999866
No 489
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=43.33 E-value=7.5e+02 Score=30.85 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 575 GHTLKLKALEAQILELKKKQESQVEL-LKQKHKSDEAAKRLQAEIQSIKAQKVQLQNKI 632 (887)
Q Consensus 575 ~~~~kl~~Le~el~~Lkkk~~~~~~l-~k~k~~~e~~~~~L~~Ei~~mK~~kv~L~kkm 632 (887)
.-.+++..|..++..|+++..+-... .......++....+..-+..+......|..++
T Consensus 238 ~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 238 TIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666666666666555542222 22233333333333333444444444444444
No 490
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=43.29 E-value=12 Score=40.43 Aligned_cols=46 Identities=28% Similarity=0.420 Sum_probs=28.6
Q ss_pred CCC--eEEEeeccCCCCcccccCC--CCCC------------CCcccchHHHHHHHHHHHHh
Q 002730 79 GYN--ATVLAYGQTGSGKTYTMGT--GLRE------------GFQTGLIPQVMNALFNKIET 124 (887)
Q Consensus 79 G~N--~tv~aYGqTGSGKTyTm~g--~~~~------------~~~~GiIpr~~~~LF~~i~~ 124 (887)
|.. -.|+.||+.|+|||..--. +-.+ ....|==.|.+++||.-...
T Consensus 207 gidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mart 268 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMART 268 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhcc
Confidence 554 3589999999999976411 0000 11124446888999976654
No 491
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=43.05 E-value=9.7 Score=41.92 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 002730 83 TVLAYGQTGSGKTYTM 98 (887)
Q Consensus 83 tv~aYGqTGSGKTyTm 98 (887)
-|+-||++|||||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999876
No 492
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=43.01 E-value=3.4e+02 Score=26.78 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 535 KKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKH 605 (887)
Q Consensus 535 ~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~ 605 (887)
.-+..|+.++..+-.++..|..+|.++.+ =++...+.|+.+..+|.+|........++++.++
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~s--------Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRS--------EKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45666777777777777777777776542 1244456666777777777766666666655443
No 493
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=42.85 E-value=8.5 Score=38.12 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=11.7
Q ss_pred EEeeccCCCCccccc
Q 002730 84 VLAYGQTGSGKTYTM 98 (887)
Q Consensus 84 v~aYGqTGSGKTyTm 98 (887)
|+-.|++|||||+.-
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 356799999998663
No 494
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.34 E-value=1.6e+02 Score=25.38 Aligned_cols=48 Identities=31% Similarity=0.486 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 002730 585 AQILELKKKQESQVELLKQKHKSDEAAKRLQ--------AEIQSIKAQKVQLQNKI 632 (887)
Q Consensus 585 ~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~--------~Ei~~mK~~kv~L~kkm 632 (887)
..|..|+.+-..-.+|.---.+.+..|.... .||+.||+||++|--.|
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi 62 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEI 62 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHH
Confidence 4556666666666666666666777777765 49999999999875444
No 495
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=42.29 E-value=17 Score=43.47 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=19.2
Q ss_pred HHHHHhcCCCeEEEeeccCCCCccccc
Q 002730 72 LVDGLFQGYNATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 72 lv~~~l~G~N~tv~aYGqTGSGKTyTm 98 (887)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 4566778887 466779999999765
No 496
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.20 E-value=2.1e+02 Score=28.39 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002730 526 TEALRHHFGKKIMELEEEKRIVQQERDRLLAEIENLAANSDGHTQKMQDGHTLKLKALEAQILELKKKQESQVELLKQKH 605 (887)
Q Consensus 526 ~~~lk~~ye~kl~eLe~ei~~lq~Erd~Ll~~l~~~~~~~~~~~~Kl~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~ 605 (887)
.+.+.+.|..+...|.+++..-+.|...|+.. ..+| .+++++|.+||.+|+.+..++.-.....-
T Consensus 52 ~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~-----~~pD----------~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~ 116 (143)
T PRK11546 52 WQKIHNDFYAQTSALRQQLVSKRYEYNALLTA-----NPPD----------SSKINAVAKEMENLRQSLDELRVKRDIAM 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHH
Q 002730 606 KSD 608 (887)
Q Consensus 606 ~~e 608 (887)
..+
T Consensus 117 ~k~ 119 (143)
T PRK11546 117 AEA 119 (143)
T ss_pred HHc
No 497
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.10 E-value=12 Score=46.77 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=15.1
Q ss_pred eEEEeeccCCCCccccc
Q 002730 82 ATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 82 ~tv~aYGqTGSGKTyTm 98 (887)
.+|.-.|+||+|||+|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46777899999999998
No 498
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=41.98 E-value=6.7e+02 Score=29.88 Aligned_cols=138 Identities=23% Similarity=0.229 Sum_probs=75.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002730 573 QDGHTLKLKALEAQILELKKKQESQVELLKQKHKSDEAAKRLQAEIQSIKAQKV-QLQNKIKQEAEQFRQWKASREKELL 651 (887)
Q Consensus 573 ~e~~~~kl~~Le~el~~Lkkk~~~~~~l~k~k~~~e~~~~~L~~Ei~~mK~~kv-~L~kkmkee~~~~r~~k~~~~kEi~ 651 (887)
-|....||+.++.++..|+.+..- +|...- + ...-+.+=| .+.|++|.-..+.+. -.+||.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~l----lk~Et~----~------~~~keq~~y~~~~KelrdtN~q~~s----~~eel~ 222 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAML----LKTETL----T------YEEKEQQLYGDCVKELRDTNTQARS----GQEELQ 222 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHH----HHhhhc----c------hhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 455677888888888777765432 221100 0 001112222 344555554444433 234444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCcHHHHHHHHHH
Q 002730 652 KLKKEGRKNEFERHKLEALNQRQKMVLQRKTEEAAIATKRLKELLEARKSSARENSVNSTGYTTPTGQSNEKSLQKWLEH 731 (887)
Q Consensus 652 qLkk~~rk~~~ei~~l~~~~~~q~~vLkrK~eE~~a~~krlk~~l~~~k~~~r~~~~~~~~~~~~~~~~~~~~~~~w~~~ 731 (887)
++-++.-+..-++.+|.++ -.=++.|.......+.-+...|..-+.+.|+.. +....-.++
T Consensus 223 ~kt~el~~q~Ee~skLlsq----l~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~---------------aE~~EleDk 283 (596)
T KOG4360|consen 223 SKTKELSRQQEENSKLLSQ----LVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLT---------------AELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---------------HHHHHHHHH
Confidence 4444444444455555431 122446666677777777777776665555432 356677778
Q ss_pred HHHHHHhHHHHHHHHH
Q 002730 732 ELEVSANVHEVRFKYE 747 (887)
Q Consensus 732 e~ei~~~v~e~~~~le 747 (887)
++|-+...+|++.+|.
T Consensus 284 yAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 284 YAECMQMLHEAEEELK 299 (596)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777665
No 499
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.94 E-value=11 Score=41.31 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=48.9
Q ss_pred EcceeeCCCCCcchhhhhhhhhhH-HHHHhcCCC---eEEEeeccCCCCcccccC---CC----CCCCC-------cccc
Q 002730 49 TFDHVYGNGGSPSSAMFGECVAPL-VDGLFQGYN---ATVLAYGQTGSGKTYTMG---TG----LREGF-------QTGL 110 (887)
Q Consensus 49 ~FD~Vf~~~~s~q~~vy~~~v~pl-v~~~l~G~N---~tv~aYGqTGSGKTyTm~---g~----~~~~~-------~~Gi 110 (887)
.++-|-+-++. -+.+-+.++-|+ .-++|.|-- ..|+.||+.|+||+|.-- +. |-+-. =.|=
T Consensus 131 kWsDVAGLE~A-KeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 131 KWSDVAGLEGA-KEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 209 (439)
T ss_pred chhhhccchhH-HHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhcc
Confidence 44555554333 445555555665 357777654 579999999999999641 10 00001 1355
Q ss_pred hHHHHHHHHHHHHhhccc
Q 002730 111 IPQVMNALFNKIETLRHQ 128 (887)
Q Consensus 111 Ipr~~~~LF~~i~~~~~~ 128 (887)
-.+.+..||.-....++.
T Consensus 210 SEkLVknLFemARe~kPS 227 (439)
T KOG0739|consen 210 SEKLVKNLFEMARENKPS 227 (439)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 677889999888776553
No 500
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=41.89 E-value=10 Score=47.96 Aligned_cols=18 Identities=33% Similarity=0.672 Sum_probs=15.1
Q ss_pred CeEEEeeccCCCCccccc
Q 002730 81 NATVLAYGQTGSGKTYTM 98 (887)
Q Consensus 81 N~tv~aYGqTGSGKTyTm 98 (887)
|..++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 344577899999999999
Done!