Query 002731
Match_columns 887
No_of_seqs 359 out of 1374
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:58:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05496 Bromo_WDR9_II Bromodom 99.9 2.1E-24 4.5E-29 205.5 13.1 108 165-272 4-112 (119)
2 cd05495 Bromo_cbp_like Bromodo 99.9 3.1E-24 6.7E-29 200.8 12.0 104 164-267 1-107 (108)
3 cd05505 Bromo_WSTF_like Bromod 99.9 2.9E-24 6.3E-29 197.6 10.6 95 168-262 2-96 (97)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 5.9E-24 1.3E-28 198.7 11.1 100 166-265 5-106 (107)
5 cd05507 Bromo_brd8_like Bromod 99.9 9.5E-24 2.1E-28 196.2 11.3 101 166-266 3-103 (104)
6 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.4E-23 2.9E-28 192.6 10.6 96 168-263 2-97 (97)
7 cd05504 Bromo_Acf1_like Bromod 99.9 1.7E-23 3.8E-28 197.9 11.5 103 164-266 10-112 (115)
8 cd05509 Bromo_gcn5_like Bromod 99.9 2.2E-23 4.7E-28 191.9 11.1 101 166-266 1-101 (101)
9 cd05508 Bromo_RACK7 Bromodomai 99.9 3.5E-23 7.5E-28 191.3 10.7 96 166-262 3-98 (99)
10 cd05502 Bromo_tif1_like Bromod 99.9 6.9E-23 1.5E-27 191.5 12.3 103 164-267 2-107 (109)
11 cd05511 Bromo_TFIID Bromodomai 99.9 9E-23 2E-27 192.1 13.0 108 169-276 3-110 (112)
12 cd05510 Bromo_SPT7_like Bromod 99.9 5E-23 1.1E-27 194.1 11.1 103 164-266 5-109 (112)
13 cd05513 Bromo_brd7_like Bromod 99.9 5.4E-23 1.2E-27 189.7 10.6 96 166-261 1-96 (98)
14 cd05516 Bromo_SNF2L2 Bromodoma 99.9 5.1E-23 1.1E-27 192.2 10.5 100 166-265 1-106 (107)
15 cd05512 Bromo_brd1_like Bromod 99.9 9.4E-23 2E-27 187.9 9.6 95 166-260 1-95 (98)
16 cd05506 Bromo_plant1 Bromodoma 99.9 1.6E-22 3.4E-27 185.4 11.0 96 168-263 2-99 (99)
17 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.4E-22 3.1E-27 187.1 10.7 96 168-263 2-102 (102)
18 cd05500 Bromo_BDF1_2_I Bromodo 99.9 2.1E-22 4.5E-27 186.6 11.1 99 164-262 2-102 (103)
19 cd05498 Bromo_Brdt_II_like Bro 99.9 2.2E-22 4.7E-27 185.5 10.8 96 168-263 2-102 (102)
20 cd05528 Bromo_AAA Bromodomain; 99.9 3.9E-22 8.5E-27 188.0 11.3 101 166-266 3-107 (112)
21 cd05519 Bromo_SNF2 Bromodomain 99.9 3.9E-22 8.4E-27 184.7 10.4 97 167-263 1-103 (103)
22 cd05501 Bromo_SP100C_like Brom 99.9 9.1E-22 2E-26 182.9 12.2 98 167-267 3-100 (102)
23 KOG1474 Transcription initiati 99.9 3E-22 6.5E-27 235.7 10.2 111 162-272 218-330 (640)
24 cd05524 Bromo_polybromo_I Brom 99.9 1E-21 2.2E-26 185.3 11.1 101 167-267 3-109 (113)
25 cd05515 Bromo_polybromo_V Brom 99.9 1E-21 2.3E-26 182.8 10.7 96 168-263 2-103 (105)
26 cd05517 Bromo_polybromo_II Bro 99.9 1.6E-21 3.5E-26 181.3 10.1 94 168-261 2-101 (103)
27 cd05518 Bromo_polybromo_IV Bro 99.9 1.7E-21 3.7E-26 181.2 10.0 93 169-261 3-101 (103)
28 cd05520 Bromo_polybromo_III Br 99.9 2.1E-21 4.6E-26 180.4 9.9 92 171-262 5-102 (103)
29 cd05525 Bromo_ASH1 Bromodomain 99.9 2.8E-21 6E-26 180.7 10.6 96 167-262 3-104 (106)
30 smart00297 BROMO bromo domain. 99.8 6.8E-21 1.5E-25 174.7 10.9 101 165-265 6-106 (107)
31 cd05529 Bromo_WDR9_I_like Brom 99.8 1.4E-20 3.1E-25 181.1 12.6 102 163-264 21-126 (128)
32 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 3.1E-20 6.8E-25 173.7 10.7 95 167-263 2-102 (106)
33 cd05522 Bromo_Rsc1_2_II Bromod 99.8 3E-20 6.5E-25 172.9 10.4 95 168-262 3-103 (104)
34 cd04369 Bromodomain Bromodomai 99.8 8.2E-20 1.8E-24 161.9 9.7 96 168-263 2-99 (99)
35 PF00439 Bromodomain: Bromodom 99.8 1.1E-19 2.4E-24 159.9 9.3 84 171-254 1-84 (84)
36 KOG0955 PHD finger protein BR1 99.8 2.6E-19 5.5E-24 216.5 8.0 295 163-478 562-865 (1051)
37 cd05492 Bromo_ZMYND11 Bromodom 99.8 2.9E-18 6.2E-23 161.4 11.7 98 170-267 4-107 (109)
38 cd05526 Bromo_polybromo_VI Bro 99.7 1.7E-17 3.7E-22 156.3 10.5 100 166-267 3-108 (110)
39 COG5076 Transcription factor i 99.6 2.3E-16 4.9E-21 175.4 9.3 105 166-270 142-252 (371)
40 KOG1245 Chromatin remodeling c 99.6 1.5E-15 3.2E-20 190.2 7.9 95 171-266 1306-1400(1404)
41 KOG1472 Histone acetyltransfer 99.3 1.2E-12 2.6E-17 154.2 6.4 103 166-268 606-708 (720)
42 KOG0386 Chromatin remodeling c 99.3 1.1E-11 2.3E-16 148.3 9.2 100 169-268 1027-1132(1157)
43 KOG1827 Chromatin remodeling c 99.0 1.2E-09 2.5E-14 127.7 8.5 103 163-265 49-157 (629)
44 cd05494 Bromodomain_1 Bromodom 98.9 3.9E-10 8.3E-15 107.3 3.3 77 168-244 5-90 (114)
45 KOG0008 Transcription initiati 98.9 2.6E-09 5.6E-14 130.8 7.2 106 171-276 1387-1492(1563)
46 KOG0008 Transcription initiati 98.8 5.4E-09 1.2E-13 128.1 8.0 155 167-332 1262-1416(1563)
47 cd05491 Bromo_TBP7_like Bromod 98.8 5E-09 1.1E-13 100.2 4.5 42 205-246 63-104 (119)
48 KOG1472 Histone acetyltransfer 98.4 4.6E-07 9.9E-12 107.9 9.0 80 180-259 300-380 (720)
49 KOG1828 IRF-2-binding protein 98.1 5.3E-07 1.1E-11 100.1 -0.1 99 166-264 19-117 (418)
50 KOG1828 IRF-2-binding protein 98.0 6.5E-06 1.4E-10 91.7 4.7 91 166-257 208-298 (418)
51 KOG1474 Transcription initiati 97.8 3.8E-06 8.2E-11 100.5 0.1 91 177-267 3-95 (640)
52 COG5076 Transcription factor i 96.5 0.00078 1.7E-08 75.9 1.0 86 181-266 278-363 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 94.2 0.078 1.7E-06 52.4 5.4 63 206-268 59-121 (131)
54 KOG0644 Uncharacterized conser 83.1 0.59 1.3E-05 57.6 1.7 59 203-261 1050-1108(1113)
55 KOG0732 AAA+-type ATPase conta 76.3 2 4.2E-05 54.9 3.2 62 184-245 533-601 (1080)
56 KOG0644 Uncharacterized conser 68.3 1.4 3E-05 54.6 -0.7 72 187-259 86-187 (1113)
57 KOG1827 Chromatin remodeling c 67.8 1 2.2E-05 54.6 -1.9 77 184-260 213-289 (629)
58 KOG2141 Protein involved in hi 35.7 81 0.0018 39.5 6.7 14 167-180 319-332 (822)
59 KOG2393 Transcription initiati 32.4 58 0.0013 39.3 4.7 27 150-176 423-449 (555)
60 smart00412 Cu_FIST Copper-Fist 25.1 31 0.00067 28.0 0.6 10 5-14 30-39 (39)
61 PF14372 DUF4413: Domain of un 24.8 2.3E+02 0.0051 26.6 6.5 51 218-268 3-53 (101)
62 KOG1999 RNA polymerase II tran 22.0 87 0.0019 40.3 3.9 12 208-219 181-192 (1024)
63 TIGR02606 antidote_CC2985 puta 21.5 1.4E+02 0.003 26.6 4.1 27 210-236 12-38 (69)
64 PF06344 Parecho_VpG: Parechov 20.1 58 0.0012 22.6 1.0 17 763-783 3-19 (20)
No 1
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.1e-24 Score=205.46 Aligned_cols=108 Identities=24% Similarity=0.405 Sum_probs=103.5
Q ss_pred cchHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCC
Q 002731 165 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 244 (887)
Q Consensus 165 ~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p 244 (887)
..|++.|..||+.|++++.+++|+.|||+..+||||+||++||||+||++||.++.|.++++|..||+|||.||++||++
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~ 83 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPN 83 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002731 245 -DTVYHKQARAIQELAKKKFHRLRAGIER 272 (887)
Q Consensus 245 -~S~Iyk~A~~Le~~fek~~~kl~~~i~~ 272 (887)
++.||.+|..|++.|++.+.++...+..
T Consensus 84 ~~s~i~~~a~~L~~~F~~~~~~l~~~~~~ 112 (119)
T cd05496 84 KRSRIYSMTLRLSALFEEHIKKIISDWKS 112 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999877753
No 2
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=3.1e-24 Score=200.84 Aligned_cols=104 Identities=33% Similarity=0.565 Sum_probs=99.2
Q ss_pred CcchHHHHHHHHHHhhcc-CccCCCcCCCCCC--CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 002731 164 PMPDKKSLELILDKLQKK-DTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 164 p~~~kk~L~~ILd~L~k~-~~s~pF~ePVD~~--e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~ 240 (887)
|.++++.|..||+.|+++ +.+++|.+||++. .+||||++|++||||+||++||+++.|.++.+|..||+|||.||+.
T Consensus 1 ~~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~ 80 (108)
T cd05495 1 PEELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWL 80 (108)
T ss_pred CHHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999 9999999999987 6999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002731 241 YNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 241 YN~p~S~Iyk~A~~Le~~fek~~~kl~ 267 (887)
||+++|.+|.+|..|++.|++.+..+.
T Consensus 81 yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 81 YNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999987764
No 3
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.9e-24 Score=197.64 Aligned_cols=95 Identities=33% Similarity=0.444 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCH
Q 002731 168 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 247 (887)
Q Consensus 168 kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~ 247 (887)
.+.|..||+.|++++.+++|..||++..+||||+||++||||+||++||+++.|.++++|.+||.|||.||+.||+++|.
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSY 81 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 002731 248 YHKQARAIQELAKKK 262 (887)
Q Consensus 248 Iyk~A~~Le~~fek~ 262 (887)
|+.+|..|++.|...
T Consensus 82 i~~~a~~le~~f~~~ 96 (97)
T cd05505 82 VLSCMRKTEQCCVNL 96 (97)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.9e-24 Score=198.73 Aligned_cols=100 Identities=31% Similarity=0.467 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCC--CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 243 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~--e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~ 243 (887)
.++-++..||+.|++++.+++|.+|||+. .+||||+||++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45566788999999999999999999987 6999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 002731 244 PDTVYHKQARAIQELAKKKFHR 265 (887)
Q Consensus 244 p~S~Iyk~A~~Le~~fek~~~k 265 (887)
++|.||.+|..|++.|++.+.+
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998875
No 5
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=9.5e-24 Score=196.15 Aligned_cols=101 Identities=31% Similarity=0.508 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
.|++.|..|++.|..++.+++|.+||+...+|+||++|++||||+||++||+++.|.++++|.+||.|||.||++||+++
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 82 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSD 82 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKKFHRL 266 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~~~kl 266 (887)
+.+|.+|..|++.|.+.+..+
T Consensus 83 s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 83 HDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999998877643
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.4e-23 Score=192.62 Aligned_cols=96 Identities=30% Similarity=0.608 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCH
Q 002731 168 KKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTV 247 (887)
Q Consensus 168 kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~ 247 (887)
...|..||+.|++++.+.+|+.||++..+|+||++|++||||+||++||+++.|+++++|..||.|||.||+.||++++.
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 81 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSE 81 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002731 248 YHKQARAIQELAKKKF 263 (887)
Q Consensus 248 Iyk~A~~Le~~fek~~ 263 (887)
++.+|..|++.|++.|
T Consensus 82 i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 82 VGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 7
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.7e-23 Score=197.87 Aligned_cols=103 Identities=31% Similarity=0.497 Sum_probs=99.5
Q ss_pred CcchHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCC
Q 002731 164 PMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 243 (887)
Q Consensus 164 p~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~ 243 (887)
-......|..||+.|++++.+++|..||++..+||||++|++||||+||++||+.+.|.++++|+.||.|||.||++||+
T Consensus 10 ~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~ 89 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKDSWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNP 89 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 002731 244 PDTVYHKQARAIQELAKKKFHRL 266 (887)
Q Consensus 244 p~S~Iyk~A~~Le~~fek~~~kl 266 (887)
++|.+|.+|..|+++|++.++++
T Consensus 90 ~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 90 EHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 8
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.2e-23 Score=191.85 Aligned_cols=101 Identities=43% Similarity=0.671 Sum_probs=97.4
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
++...|..||+.|++++.+.+|++||++..+|+||++|++||||.||++||+.+.|.++.+|..||+|||.||+.||+++
T Consensus 1 ~~~~~~~~il~~l~~~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~ 80 (101)
T cd05509 1 PLYTQLKKVLDSLKNHKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPD 80 (101)
T ss_pred ChHHHHHHHHHHHHhCCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKKFHRL 266 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~~~kl 266 (887)
|.++.+|..|++.|++.++++
T Consensus 81 s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 81 TEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999988763
No 9
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.5e-23 Score=191.29 Aligned_cols=96 Identities=30% Similarity=0.518 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
.+...|+.+++.|+ ++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||++||+++
T Consensus 3 ~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~ 81 (99)
T cd05508 3 QLSKLLKFALERMK-QPGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGD 81 (99)
T ss_pred HHHHHHHHHHHHHh-CcCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKK 262 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~ 262 (887)
|.++.+|..|.+.|+..
T Consensus 82 s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 82 HKLTQAAKAIVKICEQE 98 (99)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999988764
No 10
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=6.9e-23 Score=191.49 Aligned_cols=103 Identities=27% Similarity=0.490 Sum_probs=98.5
Q ss_pred CcchHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHHHHHhhh
Q 002731 164 PMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLAN---GSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 164 p~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~---g~Y~SleeF~~DV~LIfsNA~~ 240 (887)
....++.|..||..|++++.+++|..||++ .+|+||++|++||||+||++||+. +.|.++++|..||+|||+||+.
T Consensus 2 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~ 80 (109)
T cd05502 2 SPIDQRKCERLLLELYCHELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYK 80 (109)
T ss_pred CHHHHHHHHHHHHHHHhCCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999 899999999999999999999998 5999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002731 241 YNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 241 YN~p~S~Iyk~A~~Le~~fek~~~kl~ 267 (887)
||+++|.++.+|..|++.|++.+.++.
T Consensus 81 yN~~~s~i~~~a~~l~~~f~~~~~~~~ 107 (109)
T cd05502 81 FNEEDSEVAQAGKELELFFEEQLKEIL 107 (109)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999998764
No 11
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=9e-23 Score=192.12 Aligned_cols=108 Identities=33% Similarity=0.588 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHH
Q 002731 169 KSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVY 248 (887)
Q Consensus 169 k~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~I 248 (887)
-.++.|++.|++++.+.+|..||++..+|+||++|++||||+||++||+++.|+++++|..||+|||.||+.||+++|.+
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i 82 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVY 82 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002731 249 HKQARAIQELAKKKFHRLRAGIERSEKE 276 (887)
Q Consensus 249 yk~A~~Le~~fek~~~kl~~~i~~~e~e 276 (887)
+.+|..|...|+..++++..++...+..
T Consensus 83 ~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 110 (112)
T cd05511 83 TKKAKEMLELAEELLAEREEKLTQLEKN 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999999999999999888776654
No 12
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5e-23 Score=194.09 Aligned_cols=103 Identities=29% Similarity=0.440 Sum_probs=97.5
Q ss_pred CcchHHHHHHHHHHhhcc-CccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcC
Q 002731 164 PMPDKKSLELILDKLQKK-DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 164 p~~~kk~L~~ILd~L~k~-~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN 242 (887)
..++.+.|..||+.|+++ +.+++|+.||++..+||||++|++||||+||++||+++.|.++++|.+||.|||.||+.||
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~yN 84 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLLYN 84 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 357889999999999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHH
Q 002731 243 APDT-VYHKQARAIQELAKKKFHRL 266 (887)
Q Consensus 243 ~p~S-~Iyk~A~~Le~~fek~~~kl 266 (887)
++++ .++.+|..|++.|++.+..+
T Consensus 85 ~~~s~~~~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 85 SDPSHPLRRHANFMKKKAEHLLKLI 109 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 9865 68899999999999998776
No 13
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5.4e-23 Score=189.71 Aligned_cols=96 Identities=42% Similarity=0.766 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
+++++|..||+.|++++.+++|..||+...+||||++|++||||+||++||+++.|.++++|+.||+|||.||++||+++
T Consensus 1 ~l~~~l~~il~~l~~~~~~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 80 (98)
T cd05513 1 PLQKALEQLIRQLQRKDPHGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPD 80 (98)
T ss_pred CHHHHHHHHHHHHHcCCccccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKK 261 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek 261 (887)
|.+|++|..|.....+
T Consensus 81 s~~~~~A~~L~~~~~~ 96 (98)
T cd05513 81 TIYYKAAKKLLHSGMK 96 (98)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 9999999999876544
No 14
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5.1e-23 Score=192.24 Aligned_cols=100 Identities=27% Similarity=0.522 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHhhccCc------cCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 002731 166 PDKKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 239 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~------s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~ 239 (887)
++.+.|..||+.|.++.. +++|.+||++..+||||++|++||||+||++||++|.|.++.+|..||.|||.||+
T Consensus 1 ~l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 1 ELTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred CHHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999988766 67999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHH
Q 002731 240 QYNAPDTVYHKQARAIQELAKKKFHR 265 (887)
Q Consensus 240 ~YN~p~S~Iyk~A~~Le~~fek~~~k 265 (887)
.||+++|.||.+|..|+++|++.+++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765
No 15
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=9.4e-23 Score=187.93 Aligned_cols=95 Identities=44% Similarity=0.733 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
++...|+.||+.|+.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+++
T Consensus 1 p~~~~l~~il~~l~~~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 80 (98)
T cd05512 1 PLEVLLRKTLDQLQEKDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAKD 80 (98)
T ss_pred CHHHHHHHHHHHHHhCCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAK 260 (887)
Q Consensus 246 S~Iyk~A~~Le~~fe 260 (887)
|.+|++|..|++...
T Consensus 81 s~~~~~A~~l~~~~~ 95 (98)
T cd05512 81 TIFYRAAVRLRDQGG 95 (98)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987653
No 16
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=185.37 Aligned_cols=96 Identities=41% Similarity=0.641 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhccCccCCCcCCCCCC--CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 168 KKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 168 kk~L~~ILd~L~k~~~s~pF~ePVD~~--e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
.+.|..||+.|++++.+.+|..||++. .+|+||++|++||||+||++||+++.|.++++|..||.|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 81 (99)
T cd05506 2 MKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPG 81 (99)
T ss_pred HHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 578999999999999999999999976 699999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKKF 263 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~~ 263 (887)
|.++.+|..|++.|++.|
T Consensus 82 s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 82 NDVHTMAKELLKIFETRW 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 17
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.4e-22 Score=187.08 Aligned_cols=96 Identities=35% Similarity=0.567 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhc---cCccCCCcCCCCCC--CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcC
Q 002731 168 KKSLELILDKLQK---KDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 168 kk~L~~ILd~L~k---~~~s~pF~ePVD~~--e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN 242 (887)
.+.|..||+.|++ ++.+++|+.|||+. .+||||++|++||||++|++||+++.|+++++|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5789999999988 45789999999998 899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 002731 243 APDTVYHKQARAIQELAKKKF 263 (887)
Q Consensus 243 ~p~S~Iyk~A~~Le~~fek~~ 263 (887)
+++|.++.+|..|++.|++.|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 18
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.1e-22 Score=186.55 Aligned_cols=99 Identities=26% Similarity=0.515 Sum_probs=94.8
Q ss_pred CcchHHHHHHHHHHhhccCccCCCcCCCCCC--CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhc
Q 002731 164 PMPDKKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 241 (887)
Q Consensus 164 p~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~--e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~Y 241 (887)
...+++.|..||+.|++++.+++|..||++. .+|+||++|++||||++|++||+++.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999976 69999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 002731 242 NAPDTVYHKQARAIQELAKKK 262 (887)
Q Consensus 242 N~p~S~Iyk~A~~Le~~fek~ 262 (887)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 19
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=2.2e-22 Score=185.54 Aligned_cols=96 Identities=40% Similarity=0.655 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhcc---CccCCCcCCCCCC--CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcC
Q 002731 168 KKSLELILDKLQKK---DTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 168 kk~L~~ILd~L~k~---~~s~pF~ePVD~~--e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN 242 (887)
.+.|..||+.|+++ +.+.+|..||++. .+|+||++|++||||++|++||+++.|.++++|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999 8899999999986 599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 002731 243 APDTVYHKQARAIQELAKKKF 263 (887)
Q Consensus 243 ~p~S~Iyk~A~~Le~~fek~~ 263 (887)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999875
No 20
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.87 E-value=3.9e-22 Score=188.01 Aligned_cols=101 Identities=29% Similarity=0.517 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
.++..|..|++.|+.++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|.+||+|||.||+.||+++
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 82 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDR 82 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHH
Q 002731 246 ----TVYHKQARAIQELAKKKFHRL 266 (887)
Q Consensus 246 ----S~Iyk~A~~Le~~fek~~~kl 266 (887)
+.|+.+|..|++.|.+++.+.
T Consensus 83 s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 83 DPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CccccHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999988765
No 21
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.9e-22 Score=184.74 Aligned_cols=97 Identities=24% Similarity=0.449 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhhc------cCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 002731 167 DKKSLELILDKLQK------KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 167 ~kk~L~~ILd~L~k------~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~ 240 (887)
+++.|..|++.|+. +..+++|.+||+...+|+||++|++||||++|++||+.+.|.++.+|..||+|||.||+.
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 80 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANART 80 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 46889999999984 455779999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 002731 241 YNAPDTVYHKQARAIQELAKKKF 263 (887)
Q Consensus 241 YN~p~S~Iyk~A~~Le~~fek~~ 263 (887)
||+++|.+|.+|..|++.|++++
T Consensus 81 yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 81 YNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999999998763
No 22
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=9.1e-22 Score=182.89 Aligned_cols=98 Identities=21% Similarity=0.349 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCC
Q 002731 167 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 246 (887)
Q Consensus 167 ~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S 246 (887)
..+.|+.||..|.+++.+.+|..+ +..+||||++|++||||+||++||.++.|.++++|.+||+|||.||++||+++
T Consensus 3 ~l~~ce~il~~l~~~~~s~~f~~~--p~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~~~- 79 (102)
T cd05501 3 ELLKCEFLLLKVYCMSKSGFFISK--PYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYKDD- 79 (102)
T ss_pred HHHHHHHHHHHHHhCcccccccCC--CCCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 356699999999999999999763 46899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002731 247 VYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 247 ~Iyk~A~~Le~~fek~~~kl~ 267 (887)
.++.+|..|++.|++.|+++.
T Consensus 80 ~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 80 DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998763
No 23
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.86 E-value=3e-22 Score=235.69 Aligned_cols=111 Identities=35% Similarity=0.558 Sum_probs=104.3
Q ss_pred CCCcchHHHHHHHHHHhhccCccCCCcCCCCCCC--CcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 002731 162 GIPMPDKKSLELILDKLQKKDTYGVYAEPVDPEE--LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 239 (887)
Q Consensus 162 ~lp~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e--~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~ 239 (887)
.....+.+.|..||..|++|.++|+|..|||... +||||+||++||||+||++||.++.|.+..+|..||+|||.||+
T Consensus 218 ~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 218 KLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999874 89999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002731 240 QYNAPDTVYHKQARAIQELAKKKFHRLRAGIER 272 (887)
Q Consensus 240 ~YN~p~S~Iyk~A~~Le~~fek~~~kl~~~i~~ 272 (887)
+||.+++.||.+|..|+++|+.+|..+...+..
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~ 330 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPLEIEE 330 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999998755544
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1e-21 Score=185.29 Aligned_cols=101 Identities=23% Similarity=0.365 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhhcc------CccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 002731 167 DKKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 167 ~kk~L~~ILd~L~k~------~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~ 240 (887)
..+.|..|++.|+++ ..+.+|.++|++..+||||++|++||||+||++||+++.|.++.+|..||.|||.||+.
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999864 34458999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002731 241 YNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 241 YN~p~S~Iyk~A~~Le~~fek~~~kl~ 267 (887)
||.++|.+|.+|..|+++|++.++++.
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999887774
No 25
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1e-21 Score=182.81 Aligned_cols=96 Identities=29% Similarity=0.479 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhhcc------CccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhc
Q 002731 168 KKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 241 (887)
Q Consensus 168 kk~L~~ILd~L~k~------~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~Y 241 (887)
.+.|..|++.|..+ +.+++|+.||+..++||||++|++||||+||++||+++.|.++++|..||.|||.||++|
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788898888764 456799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q 002731 242 NAPDTVYHKQARAIQELAKKKF 263 (887)
Q Consensus 242 N~p~S~Iyk~A~~Le~~fek~~ 263 (887)
|+++|.+|.+|..|+++|.+..
T Consensus 82 N~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 26
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=1.6e-21 Score=181.28 Aligned_cols=94 Identities=28% Similarity=0.498 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhccC------ccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhc
Q 002731 168 KKSLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 241 (887)
Q Consensus 168 kk~L~~ILd~L~k~~------~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~Y 241 (887)
++.|..|++.|+.+. .+++|.++|++..+||||++|++||||+||++||+.+.|.++.+|..||.|||.||++|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 578899999997744 44699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 002731 242 NAPDTVYHKQARAIQELAKK 261 (887)
Q Consensus 242 N~p~S~Iyk~A~~Le~~fek 261 (887)
|+++|.||.+|..|+++|..
T Consensus 82 N~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 27
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=1.7e-21 Score=181.15 Aligned_cols=93 Identities=20% Similarity=0.416 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhc------cCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcC
Q 002731 169 KSLELILDKLQK------KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 169 k~L~~ILd~L~k------~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN 242 (887)
+.|..|++.|.+ +..+.+|+.+|++..+||||++|++||||+||++||+++.|.++++|..||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 557777777765 45667999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 002731 243 APDTVYHKQARAIQELAKK 261 (887)
Q Consensus 243 ~p~S~Iyk~A~~Le~~fek 261 (887)
+++|.||.+|..|+++|++
T Consensus 83 ~~~s~i~~~A~~le~~~~~ 101 (103)
T cd05518 83 EEGSQVYEDANILEKVLKE 101 (103)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999998875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.85 E-value=2.1e-21 Score=180.44 Aligned_cols=92 Identities=30% Similarity=0.534 Sum_probs=83.3
Q ss_pred HHHHHHHhhc------cCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCC
Q 002731 171 LELILDKLQK------KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 244 (887)
Q Consensus 171 L~~ILd~L~k------~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p 244 (887)
|..|++.|+. +..+++|.++|++..+||||++|++||||+||++||+++.|.++.+|+.||+|||.||++||++
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~~ 84 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNVP 84 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4455555544 3466799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 002731 245 DTVYHKQARAIQELAKKK 262 (887)
Q Consensus 245 ~S~Iyk~A~~Le~~fek~ 262 (887)
+|.+|.+|..|+++|++.
T Consensus 85 ~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 85 NSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999999763
No 29
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.8e-21 Score=180.67 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhhcc------CccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 002731 167 DKKSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 167 ~kk~L~~ILd~L~k~------~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~ 240 (887)
+.+.|..||+.|..+ ..+++|+++|++..+||||++|++||||+||++||+++.|.++++|..||.|||.||+.
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~ 82 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEK 82 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456788888888764 34579999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 002731 241 YNAPDTVYHKQARAIQELAKKK 262 (887)
Q Consensus 241 YN~p~S~Iyk~A~~Le~~fek~ 262 (887)
||+++|.||.+|..|+++|++.
T Consensus 83 yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 83 YYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999998763
No 30
>smart00297 BROMO bromo domain.
Probab=99.84 E-value=6.8e-21 Score=174.73 Aligned_cols=101 Identities=40% Similarity=0.663 Sum_probs=96.6
Q ss_pred cchHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCC
Q 002731 165 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 244 (887)
Q Consensus 165 ~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p 244 (887)
..+...|..|++.+.+++.+.+|..||++..+|+||++|++||||.+|++||+++.|.++.+|..||.|||.||+.||++
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n~~ 85 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYNGP 85 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 002731 245 DTVYHKQARAIQELAKKKFHR 265 (887)
Q Consensus 245 ~S~Iyk~A~~Le~~fek~~~k 265 (887)
++.++.+|..|.+.|++.|++
T Consensus 86 ~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 86 DSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998865
No 31
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.4e-20 Score=181.14 Aligned_cols=102 Identities=31% Similarity=0.479 Sum_probs=96.8
Q ss_pred CCcchHHHHHHHHHHhh---ccCccCCCcCCCCCC-CCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Q 002731 163 IPMPDKKSLELILDKLQ---KKDTYGVYAEPVDPE-ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNA 238 (887)
Q Consensus 163 lp~~~kk~L~~ILd~L~---k~~~s~pF~ePVD~~-e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA 238 (887)
.....+..|..+|+.|. .++.+.+|..||+.. .+|+||++|++||||+||++||+++.|+++++|..||+|||.||
T Consensus 21 ~~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 21 IRDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45567888899999999 899999999999999 99999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHH
Q 002731 239 MQYNAPDTVYHKQARAIQELAKKKFH 264 (887)
Q Consensus 239 ~~YN~p~S~Iyk~A~~Le~~fek~~~ 264 (887)
++||+++|.++.+|..|+..|.+.+.
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988775
No 32
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3.1e-20 Score=173.66 Aligned_cols=95 Identities=25% Similarity=0.385 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhhccCcc------CCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhh
Q 002731 167 DKKSLELILDKLQKKDTY------GVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 167 ~kk~L~~ILd~L~k~~~s------~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~ 240 (887)
+.+.|..|++.|+..... .+|..+|+...+||||++|++||||+||++||++ |.++++|+.||.|||.||++
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~ 79 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARL 79 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHH
Confidence 567899999999875443 4899999999999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Q 002731 241 YNAPDTVYHKQARAIQELAKKKF 263 (887)
Q Consensus 241 YN~p~S~Iyk~A~~Le~~fek~~ 263 (887)
||+++|.+|.+|..|+++|.+.+
T Consensus 80 yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 80 YNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HcCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998776
No 33
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=3e-20 Score=172.88 Aligned_cols=95 Identities=28% Similarity=0.400 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhc------cCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhc
Q 002731 168 KKSLELILDKLQK------KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 241 (887)
Q Consensus 168 kk~L~~ILd~L~k------~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~Y 241 (887)
...+..|++.|++ ++.+.+|.++|+...+||||++|++||||++|++||+++.|.++.+|..||.|||.||+.|
T Consensus 3 ~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 3 EARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567777877765 4567799999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 002731 242 NAPDTVYHKQARAIQELAKKK 262 (887)
Q Consensus 242 N~p~S~Iyk~A~~Le~~fek~ 262 (887)
|++++.+|.+|..|++.|+++
T Consensus 83 n~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998763
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.81 E-value=8.2e-20 Score=161.90 Aligned_cols=96 Identities=49% Similarity=0.790 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhhcc--CccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 168 KKSLELILDKLQKK--DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 168 kk~L~~ILd~L~k~--~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
...|..|++.|..+ +.+.+|..||++..+|+||++|++||||.+|++||+++.|.++.+|..||.|||.||+.||+.+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~ 81 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPG 81 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 46799999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKKF 263 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~~ 263 (887)
+.++.+|..|+..|++.+
T Consensus 82 ~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 82 SPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999988653
No 35
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.80 E-value=1.1e-19 Score=159.94 Aligned_cols=84 Identities=48% Similarity=0.806 Sum_probs=80.2
Q ss_pred HHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 002731 171 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHK 250 (887)
Q Consensus 171 L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk 250 (887)
|..||+.|++++.+.+|..||+...+|+|+++|++||||.+|++||+++.|+++++|..||++||.||+.||+++|.+|.
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 002731 251 QARA 254 (887)
Q Consensus 251 ~A~~ 254 (887)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 36
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.77 E-value=2.6e-19 Score=216.54 Aligned_cols=295 Identities=31% Similarity=0.347 Sum_probs=191.9
Q ss_pred CCcchHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcC
Q 002731 163 IPMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 163 lp~~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN 242 (887)
...+.+++|+.+++.|.+.+..++|..|||+.++|||++||++||||.||+.++..+.|.++++|++|+.||+.||+.||
T Consensus 562 ~l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~yn 641 (1051)
T KOG0955|consen 562 GLNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEYN 641 (1051)
T ss_pred cCchHHHHHHHHHHHhhcccccCceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHhh
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhhhh-hhhHHhhhhhccCCCCCCCcchhhhhhcccCCCCCCCC
Q 002731 243 APDTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKEL-NLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQE 321 (887)
Q Consensus 243 ~p~S~Iyk~A~~Le~~fek~~~kl~~~i~~~e~eiksE~e~-~ee~ee~~Eed~~se~k~~~~s~~Kk~~KK~~sr~~~e 321 (887)
..++.+|++|..+++.....+.+++.+.+.... .+.+.-. -+......+.+ ...............
T Consensus 642 ~~dtv~~r~av~~~e~~~~~~~~arke~e~~~~-~d~~~~~~~~~~~~~~~~~------------~~~~~~~~e~~~v~~ 708 (1051)
T KOG0955|consen 642 AKDTVYYRAAVRLRELIKKDFRNARKEPESEGL-LDRESLSHHDHLVKKLERP------------YRPNLWAPEEPQVDL 708 (1051)
T ss_pred ccCeehHhhhHHHHhhhhhHHHhcccchhhhcc-cchhhhcccchhhhhhccC------------Ccccccccccccccc
Confidence 999999999999999999999888766554321 1100000 00000000000 000000000000001
Q ss_pred CCCCCCCCcccccccCCCCCCCcccCCCCCCCCCCccccc-cCCCC----ccccccch--hhhh-hhcccccccCCCCCC
Q 002731 322 PVGSDFSSGATLATTGDIQNGSVATQAGGCERPTNTDAIV-DGNSS----LADNNLEK--VEEL-SSAKGLLSKLGRKPA 393 (887)
Q Consensus 322 pV~Sd~sSda~la~~gd~~n~~~~~~~~g~~r~~~~d~~~-~~~~~----~~~~~~e~--~~~~-~~~~~~~~K~g~k~~ 393 (887)
..-..++.+..++..-+...--...... ..| +.++.+ ....+ +.....|. ..+. +++...+.|+|.+.
T Consensus 709 e~~~~~~~e~~~~~~~~~~~~~~a~~~~-~~~--~~~~~~~~~~~s~~r~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~- 784 (1051)
T KOG0955|consen 709 ETFINLSKEHDLKIPLDKNEKKKATKLS-IPR--NRDSRIIRKEKSRLRKCGIVDTETSGSPSIPSGGEKTVKKDGLNS- 784 (1051)
T ss_pred ccccccChhhhhccccccchhhhhhhcc-ccc--ccccccchhhHHHHhhccCcCccccCCCCCCCccccchhcccccc-
Confidence 1111111111111111100000000000 000 000100 00000 00000000 0001 11122346777774
Q ss_pred CCCccccccCCCCCCCCcCCCCceeeccCcccceeEeccccchhhHHHHHHHHhhhChhHHHHHHHHHHhhcCCCCccCC
Q 002731 394 VPDENRRATYSISTQPVVRSDSIFTTFEGETKHLVAVGLHAEYSYARSLARFAATLGPVAWKVASRRIEQALPAGCKFGR 473 (887)
Q Consensus 394 ~~de~rR~TY~~~~~~~~~~~~~~~~~~~e~k~Lv~vg~~~e~~YarSLarFaa~lGp~~w~iA~~ri~~~Lp~~~~fG~ 473 (887)
.+++.+|.+. ...-.++++++.+..+.|++-|++|..+.+|+||+++.+++++++||.+|+.+++..++.+..||.
T Consensus 785 ---~~~~~~~~~~-~s~p~~~~~~sp~~~~~~~~~p~~l~~~s~~~~sn~~l~~n~t~~~~~~~~~~~~~~~~~~~~~g~ 860 (1051)
T KOG0955|consen 785 ---KNLKMSSDQA-LSSPPSEPLGSPYNDSVKGVKPSVLLEKSGLLRSNANLSQNPTASANNLASTSCSVTKATFTGNGV 860 (1051)
T ss_pred ---cccccccchh-hcCCCCCCCCCCccccccccCchhhHhhccccccccccccCCCcccccccccccccccCCccCCCC
Confidence 8999999742 222368999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccC
Q 002731 474 GWVGE 478 (887)
Q Consensus 474 GWvge 478 (887)
||+++
T Consensus 861 g~~~~ 865 (1051)
T KOG0955|consen 861 GGDVK 865 (1051)
T ss_pred Ccccc
Confidence 99443
No 37
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=2.9e-18 Score=161.38 Aligned_cols=98 Identities=20% Similarity=0.359 Sum_probs=87.7
Q ss_pred HHHHHHHHhhc-cCccCCCcCCCCC-----CCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCC
Q 002731 170 SLELILDKLQK-KDTYGVYAEPVDP-----EELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 243 (887)
Q Consensus 170 ~L~~ILd~L~k-~~~s~pF~ePVD~-----~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~ 243 (887)
.|..++..+.. .+.+.+|..||.. ..+|+||++|++||||+||++||+++.|+++++|..||.|||+||..||+
T Consensus 4 ~L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg 83 (109)
T cd05492 4 LLKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHG 83 (109)
T ss_pred hHHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 46677777777 5667899999952 25999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 002731 244 PDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 244 p~S~Iyk~A~~Le~~fek~~~kl~ 267 (887)
++|.+|.+|..|.......+.++.
T Consensus 84 ~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 84 ADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888877764
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.72 E-value=1.7e-17 Score=156.26 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHhhccCc------cCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 002731 166 PDKKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 239 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~------s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~ 239 (887)
..++.+..|++.|+.+.+ +.+|.++++ ..++||.+|+.||||.+|++||++|.|+++++|..||.|||.||+
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr 80 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERAR 80 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHH
Confidence 457888999999987653 448999988 567889999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 002731 240 QYNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 240 ~YN~p~S~Iyk~A~~Le~~fek~~~kl~ 267 (887)
+||.++|.||.+|..|+.+|.+...++.
T Consensus 81 ~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 81 RLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988777664
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.65 E-value=2.3e-16 Score=175.44 Aligned_cols=105 Identities=27% Similarity=0.424 Sum_probs=91.9
Q ss_pred chHHHHHHHHHHhhc------cCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhh
Q 002731 166 PDKKSLELILDKLQK------KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAM 239 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k------~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~ 239 (887)
...+.+..|+..+.. .....+|+.+|++..+|+||.||+.||||.+|++||+.+.|.++++|..|+.|||.||.
T Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~ 221 (371)
T COG5076 142 LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCK 221 (371)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 344555555544432 45667999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 002731 240 QYNAPDTVYHKQARAIQELAKKKFHRLRAGI 270 (887)
Q Consensus 240 ~YN~p~S~Iyk~A~~Le~~fek~~~kl~~~i 270 (887)
+||++++.+|.+|..|++.|.+++..+....
T Consensus 222 ~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 222 LYNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred hccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999998875433
No 40
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.58 E-value=1.5e-15 Score=190.18 Aligned_cols=95 Identities=33% Similarity=0.615 Sum_probs=91.9
Q ss_pred HHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 002731 171 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHK 250 (887)
Q Consensus 171 L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk 250 (887)
|..||..|+.|+.+|||++||++..+||||+||++||||+||+.||..|.|.+.++|..||.|||.||.+||.. |.|++
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002731 251 QARAIQELAKKKFHRL 266 (887)
Q Consensus 251 ~A~~Le~~fek~~~kl 266 (887)
....|.++|.+.|...
T Consensus 1385 ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hcchHHHHHHHHHHhh
Confidence 9999999999866543
No 41
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.32 E-value=1.2e-12 Score=154.20 Aligned_cols=103 Identities=33% Similarity=0.541 Sum_probs=97.2
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
.....+..||+.|..|..+|||.+||+..++||||++|++||||.||+.+|..+.|...+.|+.|+.+||.||+.||+.+
T Consensus 606 ~~~s~~~~il~~l~~h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~~~ 685 (720)
T KOG1472|consen 606 KLFSAIQNILDQLQNHGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNGSD 685 (720)
T ss_pred hhhHHHHhHHhhhhcCCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCCcc
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKKFHRLRA 268 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~~~kl~~ 268 (887)
+.+|+.|..|..+|...+.....
T Consensus 686 ~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 686 TQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred chheecccchhhhhcchhhhhhh
Confidence 99999999999999888776643
No 42
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.25 E-value=1.1e-11 Score=148.32 Aligned_cols=100 Identities=25% Similarity=0.403 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcc------CccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcC
Q 002731 169 KSLELILDKLQKK------DTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 169 k~L~~ILd~L~k~------~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN 242 (887)
+.|..|+....++ ..+..|...++.+++||||+||+.||++..|+++|..+.|.++.++..||.++|.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 7788888877754 4456999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002731 243 APDTVYHKQARAIQELAKKKFHRLRA 268 (887)
Q Consensus 243 ~p~S~Iyk~A~~Le~~fek~~~kl~~ 268 (887)
+.+|.||.+|..|+.+|.....++..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999999888877753
No 43
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.96 E-value=1.2e-09 Score=127.72 Aligned_cols=103 Identities=24% Similarity=0.443 Sum_probs=92.4
Q ss_pred CCcchHHHHHHHHHHhhccCc------cCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002731 163 IPMPDKKSLELILDKLQKKDT------YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICT 236 (887)
Q Consensus 163 lp~~~kk~L~~ILd~L~k~~~------s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfs 236 (887)
+.++...++..||..|..+.+ ...|.+++++...|+||.+|..||+|..|++|++.+.|++++.|..|+.||+.
T Consensus 49 i~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 49 IDPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred cChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 466778888888888876543 34899999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 002731 237 NAMQYNAPDTVYHKQARAIQELAKKKFHR 265 (887)
Q Consensus 237 NA~~YN~p~S~Iyk~A~~Le~~fek~~~k 265 (887)
||+.||..++.+|+++..|+..|.....+
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~~ 157 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLEDE 157 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhcc
Confidence 99999999999999999999988765543
No 44
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.95 E-value=3.9e-10 Score=107.31 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhccCccCCCcCCCCC--CCCcchhhhccCCCCHHHHHHHHhCCCC-------CCHHHHHHHHHHHHHHh
Q 002731 168 KKSLELILDKLQKKDTYGVYAEPVDP--EELPDYHDVIENPMDFTTVRKKLANGSY-------SSLDQFESDVFLICTNA 238 (887)
Q Consensus 168 kk~L~~ILd~L~k~~~s~pF~ePVD~--~e~PDYYdIIK~PMDLsTIkkKLk~g~Y-------~SleeF~~DV~LIfsNA 238 (887)
...|..+|..+.+++.+++|..||++ ..+||||++|++||||+||+++|..+.| .--..+.+++..++.||
T Consensus 5 ~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (114)
T cd05494 5 LERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRR 84 (114)
T ss_pred HHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccccc
Confidence 34566677777777899999999999 7899999999999999999999999744 43445566666677776
Q ss_pred hhcCCC
Q 002731 239 MQYNAP 244 (887)
Q Consensus 239 ~~YN~p 244 (887)
..||..
T Consensus 85 ~~~~~~ 90 (114)
T cd05494 85 SPSNIY 90 (114)
T ss_pred Cccccc
Confidence 666653
No 45
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.87 E-value=2.6e-09 Score=130.75 Aligned_cols=106 Identities=30% Similarity=0.514 Sum_probs=92.6
Q ss_pred HHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 002731 171 LELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHK 250 (887)
Q Consensus 171 L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk 250 (887)
+..|+.+++.-+.+++|.+||+++..|+||.+|++||||.+|.+++..+.|.+.++|.+||++|+.||..||+.++.+..
T Consensus 1387 ~d~~vs~~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~ 1466 (1563)
T KOG0008|consen 1387 LDNIVSQMKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTK 1466 (1563)
T ss_pred hhhHHHHHHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccH
Confidence 34445555667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002731 251 QARAIQELAKKKFHRLRAGIERSEKE 276 (887)
Q Consensus 251 ~A~~Le~~fek~~~kl~~~i~~~e~e 276 (887)
-|+.+-++....+.+...++...+..
T Consensus 1467 k~~k~~ev~~~~~~e~~~~~~~le~~ 1492 (1563)
T KOG0008|consen 1467 KARKIGEVGLANLLEYIEHLLQLEEN 1492 (1563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988887777666555554433
No 46
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.83 E-value=5.4e-09 Score=128.06 Aligned_cols=155 Identities=23% Similarity=0.301 Sum_probs=126.5
Q ss_pred hHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCC
Q 002731 167 DKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 246 (887)
Q Consensus 167 ~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S 246 (887)
+.-++..|++.+...+...+|..||+.++++|||.||+.||||.++++.|....|.+-++|..|+.||++|..+||++.+
T Consensus 1262 ~ss~l~~i~n~~~~~~~t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~ 1341 (1563)
T KOG0008|consen 1262 LSSILETIINQARSSPNTYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLA 1341 (1563)
T ss_pred cccchHHHHHHHhcCCCCcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhhhhhhhHHhhhhhccCCCCCCCcchhhhhhcccCCCCCCCCCCCCC
Q 002731 247 VYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSILVKKQTKKHFSRTIQEPVGSD 326 (887)
Q Consensus 247 ~Iyk~A~~Le~~fek~~~kl~~~i~~~e~eiksE~e~~ee~ee~~Eed~~se~k~~~~s~~Kk~~KK~~sr~~~epV~Sd 326 (887)
.+...+..+...+-..|.+-.+.+...+..|.+....+..- .- --........+--+-+|+++++|.++
T Consensus 1342 ~~t~~~q~mls~~~~~~~ekedk~~~lEk~Inplld~~d~v----------~~-~~~d~~vs~~~~ipes~~f~~~v~~k 1410 (1563)
T KOG0008|consen 1342 SLTRQQQSMLSLCFEKLKEKEDKLWRLEKAINPLLDDDDQV----------AF-FILDNIVSQMKEIPESWPFHEPVNKK 1410 (1563)
T ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHhhcCcccCccchh----------hH-hhhhhHHHHHHhcchhcccccccchh
Confidence 99999999888888888877778888888777643322100 00 00111122245567799999999999
Q ss_pred CCCccc
Q 002731 327 FSSGAT 332 (887)
Q Consensus 327 ~sSda~ 332 (887)
...+--
T Consensus 1411 ~~~~yy 1416 (1563)
T KOG0008|consen 1411 RVPDYY 1416 (1563)
T ss_pred hchHHH
Confidence 876543
No 47
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.78 E-value=5e-09 Score=100.20 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCC
Q 002731 205 NPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT 246 (887)
Q Consensus 205 ~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S 246 (887)
.||||+||++||.+|.|.++++|++||+|||.||++||.++.
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~dr 104 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRER 104 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 689999999999999999999999999999999999998754
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.44 E-value=4.6e-07 Score=107.90 Aligned_cols=80 Identities=30% Similarity=0.522 Sum_probs=69.4
Q ss_pred ccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHH
Q 002731 180 KKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDT-VYHKQARAIQEL 258 (887)
Q Consensus 180 k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S-~Iyk~A~~Le~~ 258 (887)
....+++|.++|+++..|+||.||+.||||.++.+|+..+.|.+.++|+.|+.+||.||..||...+ .+...|..++..
T Consensus 300 ~~~~s~~~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~~~ 379 (720)
T KOG1472|consen 300 RTEHSTPFLEKVSKEDAPNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMNSK 379 (720)
T ss_pred ccccccccccCCChhhCcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhccC
Confidence 4788899999999999999999999999999999999999999999999999999999999997654 444444444433
Q ss_pred H
Q 002731 259 A 259 (887)
Q Consensus 259 f 259 (887)
-
T Consensus 380 s 380 (720)
T KOG1472|consen 380 S 380 (720)
T ss_pred c
Confidence 3
No 49
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.12 E-value=5.3e-07 Score=100.15 Aligned_cols=99 Identities=32% Similarity=0.365 Sum_probs=89.9
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
+.....+.++.+|-+++.-..|.-||.....|+|.+||+.|||+.||+.|++.+.|.++.+|..|.+||+.||..||..+
T Consensus 19 p~~~~~ehhlrkl~sKdp~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~ 98 (418)
T KOG1828|consen 19 PDSGDAEHHLRKLPSKDPKQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHP 98 (418)
T ss_pred cchhhHHHHHHhccccChhhhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCC
Confidence 44456678888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQELAKKKFH 264 (887)
Q Consensus 246 S~Iyk~A~~Le~~fek~~~ 264 (887)
+.++..|..|..+....+.
T Consensus 99 Tv~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 99 TVPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred ccccccccccchhhcchhh
Confidence 9999999998877665554
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.96 E-value=6.5e-06 Score=91.69 Aligned_cols=91 Identities=21% Similarity=0.152 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHhhccCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Q 002731 166 PDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 166 ~~kk~L~~ILd~L~k~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~ 245 (887)
.....+....++|...+....|..++....+|.|..+|++|+++.|++.|+.+..|.| -+|..|+.|||.||++||+++
T Consensus 208 g~~~l~~~q~~kl~~~~p~~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehs 286 (418)
T KOG1828|consen 208 GGQQLQTLQEDKLNRVDPVAYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHS 286 (418)
T ss_pred ccHHHHHHHHHHhcccCchhhhcccchhhhcccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcc
Confidence 3445566677888888889999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CHHHHHHHHHHH
Q 002731 246 TVYHKQARAIQE 257 (887)
Q Consensus 246 S~Iyk~A~~Le~ 257 (887)
..+|+.|..+..
T Consensus 287 k~yyelank~lh 298 (418)
T KOG1828|consen 287 KSYYELANKQLH 298 (418)
T ss_pred hHHHHHHHhhhh
Confidence 999999998876
No 51
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=97.83 E-value=3.8e-06 Score=100.53 Aligned_cols=91 Identities=25% Similarity=0.406 Sum_probs=82.2
Q ss_pred HhhccCccCCCcCCCCCCC--CcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHH
Q 002731 177 KLQKKDTYGVYAEPVDPEE--LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARA 254 (887)
Q Consensus 177 ~L~k~~~s~pF~ePVD~~e--~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk~A~~ 254 (887)
.+.++.++++|..||+... +|+||.+|.+|||+++|+.+|.+..|.+..+..+|+..+|.||..||...-.|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 3556888999999999654 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 002731 255 IQELAKKKFHRLR 267 (887)
Q Consensus 255 Le~~fek~~~kl~ 267 (887)
++..|.+....+.
T Consensus 83 ~~~~~~~~~~~~~ 95 (640)
T KOG1474|consen 83 LEKLFPKKLRSMP 95 (640)
T ss_pred chhhccccccccc
Confidence 9988876665553
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.55 E-value=0.00078 Score=75.92 Aligned_cols=86 Identities=33% Similarity=0.464 Sum_probs=78.3
Q ss_pred cCccCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 002731 181 KDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAK 260 (887)
Q Consensus 181 ~~~s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk~A~~Le~~fe 260 (887)
+...++|..+++....|+|+++|..+|++.+.+.++..+.|++...|..|..+++.||..||+....++..+..+..++.
T Consensus 278 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (371)
T COG5076 278 HVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVI 357 (371)
T ss_pred ccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHH
Q 002731 261 KKFHRL 266 (887)
Q Consensus 261 k~~~kl 266 (887)
......
T Consensus 358 ~~~~~~ 363 (371)
T COG5076 358 KKTRLI 363 (371)
T ss_pred hhhhhh
Confidence 665443
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=94.21 E-value=0.078 Score=52.45 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002731 206 PMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 268 (887)
Q Consensus 206 PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk~A~~Le~~fek~~~kl~~ 268 (887)
|.||.-|++||+.|.|+++.+|.+||-.|+.-++.-.+....+-+.--.+.-+|.+.++++-.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~ 121 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFP 121 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999887766554444444444455566666665543
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=83.13 E-value=0.59 Score=57.59 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=48.7
Q ss_pred ccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 002731 203 IENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKK 261 (887)
Q Consensus 203 IK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk~A~~Le~~fek 261 (887)
-.-|..|..|+.+|++.+|++.+.|..|+..|.+||.+|.+-+--+-..+..|...|.+
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 45689999999999999999999999999999999999998776555545555555443
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=76.28 E-value=2 Score=54.92 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=55.0
Q ss_pred cCCCcCCCCCCC-----CcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHH--HHHHHHHHhhhcCCCC
Q 002731 184 YGVYAEPVDPEE-----LPDYHDVIENPMDFTTVRKKLANGSYSSLDQFES--DVFLICTNAMQYNAPD 245 (887)
Q Consensus 184 s~pF~ePVD~~e-----~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~--DV~LIfsNA~~YN~p~ 245 (887)
+..|..|++... +++|..+|+.+||+...-.++..+.|.++.+|.. ++.|||.|+..||+..
T Consensus 533 ~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 346777776543 5699999999999999999999999999999999 9999999999999865
No 56
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=68.25 E-value=1.4 Score=54.55 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=58.1
Q ss_pred CcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCC--------------C----------CHHH------HHHHHHHHHH
Q 002731 187 YAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSY--------------S----------SLDQ------FESDVFLICT 236 (887)
Q Consensus 187 F~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y--------------~----------Slee------F~~DV~LIfs 236 (887)
|.-++|+..+|-|+.+...|.+|+|++..|.+..| . ++.+ ...-+.+|-.
T Consensus 86 lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 86 LVPMLDKPIPPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred hccCcCCCCCcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 44577888899999999999999999999988777 2 3333 6677889999
Q ss_pred HhhhcCCCCCHHHHHHHHHHHHH
Q 002731 237 NAMQYNAPDTVYHKQARAIQELA 259 (887)
Q Consensus 237 NA~~YN~p~S~Iyk~A~~Le~~f 259 (887)
||..++.|++ +++-++.+.++.
T Consensus 166 at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHHHH
Confidence 9999999999 676666665543
No 57
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=67.79 E-value=1 Score=54.57 Aligned_cols=77 Identities=9% Similarity=0.005 Sum_probs=71.0
Q ss_pred cCCCcCCCCCCCCcchhhhccCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 002731 184 YGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAK 260 (887)
Q Consensus 184 s~pF~ePVD~~e~PDYYdIIK~PMDLsTIkkKLk~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk~A~~Le~~fe 260 (887)
...|.+.++.+.+|+||.+++=+|.+....+++..+.|.....|..|+.++|.|+..|+.....++.++..|.+...
T Consensus 213 Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv 289 (629)
T KOG1827|consen 213 IERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDV 289 (629)
T ss_pred ecccccCcccccccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccce
Confidence 35788889999999999999999999999999999999999999999999999999999999999999988876543
No 58
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=35.73 E-value=81 Score=39.46 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHhhc
Q 002731 167 DKKSLELILDKLQK 180 (887)
Q Consensus 167 ~kk~L~~ILd~L~k 180 (887)
+++.|..+|++|..
T Consensus 319 l~rkv~g~LNKLSd 332 (822)
T KOG2141|consen 319 LRRKVNGSLNKLSD 332 (822)
T ss_pred HHHHHHHHHHHHHH
Confidence 33556666666643
No 59
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=32.41 E-value=58 Score=39.30 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHH
Q 002731 150 DSPPGTPNDRQSGIPMPDKKSLELILD 176 (887)
Q Consensus 150 ds~p~tP~~~~s~lp~~~kk~L~~ILd 176 (887)
.+.+++|.......+.....-|..++.
T Consensus 423 ~sktntp~~~~~t~~~t~~~~as~~~~ 449 (555)
T KOG2393|consen 423 KSKTNTPVHKERTLPSTSPADASSILQ 449 (555)
T ss_pred ccCCCCCcccccCCCCCCchhhhHHhc
Confidence 345566666655555555555554443
No 60
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=25.08 E-value=31 Score=27.96 Aligned_cols=10 Identities=40% Similarity=0.879 Sum_probs=7.9
Q ss_pred ccccccCCCC
Q 002731 5 VKRKKKGRPS 14 (887)
Q Consensus 5 ~~~kkkgrps 14 (887)
.+=||||||+
T Consensus 30 ~~i~kkGRP~ 39 (39)
T smart00412 30 IPVRPRGRPS 39 (39)
T ss_pred eeecCCCCCC
Confidence 4557999996
No 61
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=24.76 E-value=2.3e+02 Score=26.61 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002731 218 NGSYSSLDQFESDVFLICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLRA 268 (887)
Q Consensus 218 ~g~Y~SleeF~~DV~LIfsNA~~YN~p~S~Iyk~A~~Le~~fek~~~kl~~ 268 (887)
...|.|..-|...|..|-.....++..+..+..+|..|.+.|++.|++...
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346889999998888888888888877899999999999999999986643
No 62
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=22.02 E-value=87 Score=40.31 Aligned_cols=12 Identities=25% Similarity=0.307 Sum_probs=5.8
Q ss_pred CHHHHHHHHhCC
Q 002731 208 DFTTVRKKLANG 219 (887)
Q Consensus 208 DLsTIkkKLk~g 219 (887)
.|..|++.|...
T Consensus 181 a~~LMrK~i~~~ 192 (1024)
T KOG1999|consen 181 AFCLMRKFIELD 192 (1024)
T ss_pred HHHHHHHHHhhc
Confidence 344455555443
No 63
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=21.45 E-value=1.4e+02 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 002731 210 TTVRKKLANGSYSSLDQFESDVFLICT 236 (887)
Q Consensus 210 sTIkkKLk~g~Y~SleeF~~DV~LIfs 236 (887)
..|+..+..|.|.+.+++++|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999998877554
No 64
>PF06344 Parecho_VpG: Parechovirus Genome-linked protein; InterPro: IPR009407 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C)) []. This entry consists of the genome-linked protein Vpg type P3B.; GO: 0019015 viral genome
Probab=20.08 E-value=58 Score=22.65 Aligned_cols=17 Identities=47% Similarity=1.081 Sum_probs=11.5
Q ss_pred cCCchhhhcccccccccCCCc
Q 002731 763 YNPTREFHTQISRARGEFPLS 783 (887)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~ 783 (887)
|||| --+....|.||++
T Consensus 3 ynpt----lp~~kpkgtfpvs 19 (20)
T PF06344_consen 3 YNPT----LPVAKPKGTFPVS 19 (20)
T ss_pred cCcc----ccccccCCccccc
Confidence 8888 3455666788754
Done!