Query 002731
Match_columns 887
No_of_seqs 322 out of 1374
Neff 4.5
Searched_HMMs 29240
Date Tue Mar 26 18:06:52 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002731.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1445-1449//hhsearch_pdb/002731hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uv5_A Transcription initiatio 1.0 1 1 196.6 11.7 154 165-328 13-167 (265)
2 3fkm_X Signaling protein; brom 1.0 1 1 194.9 12.1 112 156-267 11-124 (166)
3 3aad_A Transcription initiatio 1.0 1 1 193.0 8.5 152 165-326 46-198 (292)
4 3uv4_A Second bromodomain of h 1.0 1 1 192.4 12.2 118 167-284 30-148 (158)
5 4alg_A Bromodomain-containing 1.0 1 1 189.2 11.1 105 163-267 29-135 (154)
6 2dat_A Possible global transcr 1.0 1 1 189.1 12.6 109 159-267 6-120 (123)
7 2d9e_A Peregrin; four-helix bu 1.0 1 1 189.0 14.5 111 164-274 5-115 (121)
8 3g0l_A Hwalp4, bromodomain adj 1.0 1 1 187.5 14.8 107 162-268 9-115 (117)
9 2grc_A Probable global transcr 1.0 1 1 187.3 12.6 107 161-267 6-119 (129)
10 3mb3_A PH-interacting protein; 1.0 1 1 186.8 14.3 111 163-273 18-129 (135)
No 1
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=1.00 E-value=1 Score=196.59 Aligned_cols=154 Identities=21% Similarity=0.355 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20299999999996325766777677898987530101169779899999972799999999999999999975210899
Q 002731 165 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 244 (887)
Q Consensus 165 ~~~kk~L~~ILd~L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~YN~~ 244 (887)
..+...|..||+.|.+++.+++|..||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||++
T Consensus 13 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 92 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 92 (265)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 89999999999999849976665079993436778998178886999999997699999999999999977646424899
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-HHHHHCCCCCCCCCCCCC
Q ss_conf 9799999999999999999999987998664108156542368765420157897778602-222001468998888888
Q 002731 245 DTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSI-LVKKQTKKHFSRTIQEPV 323 (887)
Q Consensus 245 gS~IykdA~~Lq~~fek~i~el~~~~~~~e~e~ksE~e~~ee~ee~~Eed~~se~ksk~~s-~~Kk~~KK~~sr~~~epV 323 (887)
+|.|+.+|..|..+|++.|.++...+...+..+.+..+.++.... ..-... ..++..+.+.+++|..||
T Consensus 93 ~s~i~~~A~~l~~~~~~~~~~~~~~~~~~ek~i~p~~dd~~~~~~----------~~il~~i~~~~l~~~~~~~~F~~pv 162 (265)
T 3uv5_A 93 KHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAF----------SFILDNIVTQKMMAVPDSWPFHHPV 162 (265)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSTTTTCHHHHHH----------HHHHHHHHHHTTTTSTTCGGGTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH----------HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 874889999999999999988864100244433210121022588----------9999999999998633007886899
Q ss_pred CCCCC
Q ss_conf 88899
Q 002731 324 GSDFS 328 (887)
Q Consensus 324 ~Sd~s 328 (887)
..+.-
T Consensus 163 ~~~~~ 167 (265)
T 3uv5_A 163 NKKFV 167 (265)
T ss_dssp CTTTS
T ss_pred CHHHH
T ss_conf 85674
No 2
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=1.00 E-value=1 Score=194.94 Aligned_cols=112 Identities=25% Similarity=0.358 Sum_probs=103.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 999899999202999999999963257667776778989--875301011697798999999727999999999999999
Q 002731 156 PNDRQSGIPMPDKKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFL 233 (887)
Q Consensus 156 P~~~~s~lp~~~kk~L~~ILd~L~k~d~s~pF~ePVDkk--e~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~L 233 (887)
+......+...+++.|..||+.|++++.+++|..||++. .+||||++|++||||+||++||.++.|.++.+|..||+|
T Consensus 11 ~~~~~~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (166)
T 3fkm_X 11 RENLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQL 90 (166)
T ss_dssp ------CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 87678964199999999999999858897121488982324499788766899999999999727999799999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997521089997999999999999999999999
Q 002731 234 ICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 234 IfsNA~~YN~~gS~IykdA~~Lq~~fek~i~el~ 267 (887)
||.||++||+++|.|+.+|..|+.+|++.|.++.
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 91 IFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999879999999999999999999999866
No 3
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=193.00 Aligned_cols=152 Identities=21% Similarity=0.349 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20299999999996325766777677898987530101169779899999972799999999999999999975210899
Q 002731 165 MPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAP 244 (887)
Q Consensus 165 ~~~kk~L~~ILd~L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~YN~~ 244 (887)
..+...|..||+.|..++.+++|++||++..+||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||++
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 125 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGP 125 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999809855543688990105568988078678789998862798599999999987888889997587
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHCCCCCCCCCCCCC
Q ss_conf 97999999999999999999999879986641081565423687654201578977786022-22001468998888888
Q 002731 245 DTVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELNLEKELRLEKDLKSEPKTKSSIL-VKKQTKKHFSRTIQEPV 323 (887)
Q Consensus 245 gS~IykdA~~Lq~~fek~i~el~~~~~~~e~e~ksE~e~~ee~ee~~Eed~~se~ksk~~s~-~Kk~~KK~~sr~~~epV 323 (887)
+|.|+.+|..|.++|.+.+.++...+...+..+.+....++ .... ..-.... ..+....+.+++|.+||
T Consensus 126 ~s~i~~~A~~L~~~~~~~~~~~~~~~~~~e~~i~Pl~dd~~------~~~~----~~~l~~i~~~~l~~~~~s~~F~~pv 195 (292)
T 3aad_A 126 KHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDD------QVAF----SFILDNIVTQKMMAVPDSWPFHHPV 195 (292)
T ss_dssp SSHHHHHHTHHHHTTTTTGGGSHHHHHHHHHTTSSSTTCHH------HHHH----HHHHHHHHHHTGGGSTTCGGGTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCH------HHHH----HHHHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 30899999988888886511000001223212564310001------5777----7778877643432174206777526
Q ss_pred CCC
Q ss_conf 888
Q 002731 324 GSD 326 (887)
Q Consensus 324 ~Sd 326 (887)
+.+
T Consensus 196 d~~ 198 (292)
T 3aad_A 196 NKK 198 (292)
T ss_dssp CTT
T ss_pred CCC
T ss_conf 531
No 4
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=1.00 E-value=1 Score=192.37 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=104.4
Q ss_pred HHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 29999999999-63257667776778989875301011697798999999727999999999999999999752108999
Q 002731 167 DKKSLELILDK-LQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNAPD 245 (887)
Q Consensus 167 ~kk~L~~ILd~-L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~YN~~g 245 (887)
+..+|..|+.. |+.++.+++|..||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||++||+++
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~ 109 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPE 109 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999988299864444859955465388774892279999999986899999999999999999999988899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 799999999999999999999987998664108156542
Q 002731 246 TVYHKQARAIQELAKKKFHRLRAGIERSEKELKPEKELN 284 (887)
Q Consensus 246 S~IykdA~~Lq~~fek~i~el~~~~~~~e~e~ksE~e~~ 284 (887)
|.||.+|..|...|.+.+.++...+...+..+....+..
T Consensus 110 s~i~~~A~~L~~~~~~~l~e~~~~l~~le~~i~~~~e~a 148 (158)
T 3uv4_A 110 SQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKEAA 148 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998999999998889999999
No 5
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=1.00 E-value=1 Score=189.17 Aligned_cols=105 Identities=25% Similarity=0.409 Sum_probs=99.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99202999999999963257667776778989--8753010116977989999997279999999999999999997521
Q 002731 163 IPMPDKKSLELILDKLQKKDTYGVYAEPVDPE--ELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQ 240 (887)
Q Consensus 163 lp~~~kk~L~~ILd~L~k~d~s~pF~ePVDkk--e~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~ 240 (887)
+...++.+|..||+.|.+++.+++|++||++. .+||||++|++||||+||++||+++.|.++++|..||+|||.||++
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 108 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYI 108 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 50999999999999998586853205789913224987898838998899999998548999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 089997999999999999999999999
Q 002731 241 YNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 241 YN~~gS~IykdA~~Lq~~fek~i~el~ 267 (887)
||++++.||.+|..|+++|++.|.++.
T Consensus 109 YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 109 YNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 879999999999999999999999787
No 6
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=189.09 Aligned_cols=109 Identities=26% Similarity=0.441 Sum_probs=100.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCC------CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 899999202999999999963257------66777677898987530101169779899999972799999999999999
Q 002731 159 RQSGIPMPDKKSLELILDKLQKKD------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVF 232 (887)
Q Consensus 159 ~~s~lp~~~kk~L~~ILd~L~k~d------~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~ 232 (887)
.....+..+.+.|..||+.|+++. .+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+
T Consensus 6 ~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~ 85 (123)
T 2dat_A 6 SGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVM 85 (123)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 89999799999999999999852412678412976599981007788999289887999999985799999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997521089997999999999999999999999
Q 002731 233 LICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 233 LIfsNA~~YN~~gS~IykdA~~Lq~~fek~i~el~ 267 (887)
|||.||++||+++|.+|.+|..|+++|++.++++.
T Consensus 86 li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 86 LLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999879999999999999999999998768
No 7
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=189.00 Aligned_cols=111 Identities=35% Similarity=0.545 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 92029999999999632576677767789898753010116977989999997279999999999999999997521089
Q 002731 164 PMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYNA 243 (887)
Q Consensus 164 p~~~kk~L~~ILd~L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~YN~ 243 (887)
..++...|..||+.|++++.+++|.+||++..+||||++|++||||+||++||+++.|.++++|..||+|||.||+.||+
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 55899999999999982985486579697000688898838986799999998669999999999999999999999879
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9979999999999999999999998799866
Q 002731 244 PDTVYHKQARAIQELAKKKFHRLRAGIERSE 274 (887)
Q Consensus 244 ~gS~IykdA~~Lq~~fek~i~el~~~~~~~e 274 (887)
++|.+|.+|..|++.|++.|.+++..++...
T Consensus 85 ~~s~~~~~A~~L~~~~~~~l~~~~~~~~~~~ 115 (121)
T 2d9e_A 85 KDTIFYRAAVRLREQGGAVLRQARRQAEKMG 115 (121)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999999999999998748
No 8
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=1.00 E-value=1 Score=187.49 Aligned_cols=107 Identities=27% Similarity=0.467 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99920299999999996325766777677898987530101169779899999972799999999999999999975210
Q 002731 162 GIPMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQY 241 (887)
Q Consensus 162 ~lp~~~kk~L~~ILd~L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~Y 241 (887)
.......+.|..||+.|..++.+++|.+||+...+||||++|++||||+||++||+++.|.++++|..||+|||.||+.|
T Consensus 9 ~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 9 RDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp CCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999849896665285986555882878589999999999980799979999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899979999999999999999999998
Q 002731 242 NAPDTVYHKQARAIQELAKKKFHRLRA 268 (887)
Q Consensus 242 N~~gS~IykdA~~Lq~~fek~i~el~~ 268 (887)
|+++|.++.+|..|+++|++.|+++..
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 799999999999999999999999883
No 9
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=1.00 E-value=1 Score=187.28 Aligned_cols=107 Identities=26% Similarity=0.492 Sum_probs=100.9
Q ss_pred CCCCCCHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9999202999999999963257-------667776778989875301011697798999999727999999999999999
Q 002731 161 SGIPMPDKKSLELILDKLQKKD-------TYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFL 233 (887)
Q Consensus 161 s~lp~~~kk~L~~ILd~L~k~d-------~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~L 233 (887)
++.+..+.+.|..||+.|+++. .+++|++||+...+||||++|++||||+||++||.++.|.++++|..||+|
T Consensus 6 ~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 85 (129)
T 2grc_A 6 SPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVML 85 (129)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 89969999999999999983611235680119763889823278889881898889999999806998999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997521089997999999999999999999999
Q 002731 234 ICTNAMQYNAPDTVYHKQARAIQELAKKKFHRLR 267 (887)
Q Consensus 234 IfsNA~~YN~~gS~IykdA~~Lq~~fek~i~el~ 267 (887)
||.||+.||+++|.+|.+|..|+.+|++.|+++.
T Consensus 86 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 119 (129)
T 2grc_A 86 LCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIE 119 (129)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999879999999999999999999999826
No 10
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=186.75 Aligned_cols=111 Identities=27% Similarity=0.406 Sum_probs=105.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99202999999999963257667776778989875301011697798999999727999999999999999999752108
Q 002731 163 IPMPDKKSLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIENPMDFTTVRKKLANGSYSSLDQFESDVFLICTNAMQYN 242 (887)
Q Consensus 163 lp~~~kk~L~~ILd~L~k~d~s~pF~ePVDkke~PDYYeIIK~PMDLsTIkkKLk~g~YkSleeF~~DV~LIfsNA~~YN 242 (887)
....+++.|..||+.|..++.+++|.+||++..+||||++|++||||+||++||.++.|.++++|..||+|||.||+.||
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 97 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYT 97 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 79999999999999998298876656899923279889993798589999999817999999999999999999999978
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99-97999999999999999999999879986
Q 002731 243 AP-DTVYHKQARAIQELAKKKFHRLRAGIERS 273 (887)
Q Consensus 243 ~~-gS~IykdA~~Lq~~fek~i~el~~~~~~~ 273 (887)
++ +|.||.+|..|+++|++.|.++..++...
T Consensus 98 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~ 129 (135)
T 3mb3_A 98 PSKRSRIYSMSLRLSAFFEEHISSVLSDYKSA 129 (135)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89898999999999999999999999989999
Done!