Query 002733
Match_columns 887
No_of_seqs 456 out of 2757
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 6E-217 1E-221 1877.1 72.8 868 1-887 106-986 (986)
2 KOG2178 Predicted sugar kinase 100.0 4.8E-75 1.1E-79 631.4 27.9 332 550-887 65-409 (409)
3 PLN02935 Bifunctional NADH kin 100.0 5.4E-71 1.2E-75 622.8 34.4 318 564-886 179-502 (508)
4 PRK02649 ppnK inorganic polyph 100.0 1.1E-67 2.5E-72 573.0 34.3 295 580-887 2-300 (305)
5 PRK04539 ppnK inorganic polyph 100.0 8.6E-67 1.9E-71 564.3 32.5 289 576-882 2-295 (296)
6 PRK14077 pnk inorganic polypho 100.0 2.2E-66 4.8E-71 559.0 33.6 278 578-879 9-286 (287)
7 PRK01911 ppnK inorganic polyph 100.0 9.9E-66 2.2E-70 555.1 34.4 288 581-883 2-291 (292)
8 PRK03372 ppnK inorganic polyph 100.0 2E-65 4.3E-70 555.5 34.8 293 577-881 3-299 (306)
9 PRK03378 ppnK inorganic polyph 100.0 2.6E-65 5.7E-70 552.0 34.9 287 577-881 3-290 (292)
10 PRK02231 ppnK inorganic polyph 100.0 2.7E-64 5.8E-69 538.8 31.8 269 596-881 2-271 (272)
11 PRK01231 ppnK inorganic polyph 100.0 1.3E-63 2.8E-68 539.6 34.2 287 579-882 4-291 (295)
12 PRK02155 ppnK NAD(+)/NADH kina 100.0 2.4E-63 5.2E-68 536.8 33.5 287 576-881 2-289 (291)
13 PRK01185 ppnK inorganic polyph 100.0 6.5E-61 1.4E-65 512.7 33.1 264 581-877 2-266 (271)
14 PRK02645 ppnK inorganic polyph 100.0 1.6E-60 3.4E-65 518.0 32.8 289 579-886 3-300 (305)
15 PRK14076 pnk inorganic polypho 100.0 6.3E-60 1.4E-64 550.6 34.2 285 573-879 284-569 (569)
16 COG0061 nadF NAD kinase [Coenz 100.0 1.8E-59 3.8E-64 504.6 34.1 280 580-880 1-281 (281)
17 PRK03501 ppnK inorganic polyph 100.0 1.2E-59 2.5E-64 501.2 32.1 254 580-876 3-263 (264)
18 PRK03708 ppnK inorganic polyph 100.0 2.6E-59 5.5E-64 502.3 33.6 273 581-879 2-276 (277)
19 PRK04885 ppnK inorganic polyph 100.0 6.8E-58 1.5E-62 488.3 30.8 251 581-877 2-261 (265)
20 PRK14075 pnk inorganic polypho 100.0 1.7E-56 3.7E-61 475.7 31.8 254 581-882 2-255 (256)
21 PRK00561 ppnK inorganic polyph 100.0 4.7E-56 1E-60 471.8 31.2 245 581-876 2-255 (259)
22 PF01513 NAD_kinase: ATP-NAD k 100.0 1.5E-54 3.3E-59 466.6 25.8 270 581-860 1-284 (285)
23 PRK04761 ppnK inorganic polyph 100.0 2.3E-51 5E-56 433.1 26.6 213 644-874 25-241 (246)
24 PLN02929 NADH kinase 100.0 8.1E-50 1.8E-54 431.0 28.1 234 593-861 33-296 (301)
25 PF13350 Y_phosphatase3: Tyros 99.9 1.6E-22 3.6E-27 201.2 12.8 132 115-276 1-164 (164)
26 PF03162 Y_phosphatase2: Tyros 99.8 6.7E-21 1.4E-25 191.2 11.7 122 134-274 4-129 (164)
27 TIGR01244 conserved hypothetic 99.8 1.5E-19 3.3E-24 175.6 14.1 113 156-272 7-121 (135)
28 KOG4180 Predicted kinase [Gene 99.7 3.9E-18 8.4E-23 182.8 11.5 136 642-782 103-277 (395)
29 PF04273 DUF442: Putative phos 99.7 6.4E-18 1.4E-22 159.5 10.6 100 156-259 7-108 (110)
30 COG3453 Uncharacterized protei 99.6 1.1E-15 2.3E-20 144.6 12.3 111 156-270 8-120 (130)
31 COG2365 Protein tyrosine/serin 99.6 1.7E-15 3.8E-20 161.4 6.5 168 155-323 52-247 (249)
32 KOG1572 Predicted protein tyro 99.5 5.5E-14 1.2E-18 146.6 12.0 124 132-274 55-186 (249)
33 smart00195 DSPc Dual specifici 99.5 3.5E-13 7.5E-18 129.6 11.9 107 156-273 6-116 (138)
34 cd00127 DSPc Dual specificity 99.4 1.5E-12 3.3E-17 124.4 12.0 113 156-277 7-123 (139)
35 PTZ00393 protein tyrosine phos 99.3 2E-11 4.4E-16 128.9 12.5 105 166-278 106-212 (241)
36 PTZ00242 protein tyrosine phos 99.3 5.1E-11 1.1E-15 120.2 13.2 112 157-276 17-139 (166)
37 PF05706 CDKN3: Cyclin-depende 99.2 1.4E-11 3E-16 123.7 8.2 103 166-269 61-168 (168)
38 PF00782 DSPc: Dual specificit 99.2 1.9E-11 4.1E-16 116.6 6.2 106 158-272 1-110 (133)
39 PRK12361 hypothetical protein; 99.1 4.6E-10 9.9E-15 132.0 13.9 115 156-277 100-218 (547)
40 KOG1720 Protein tyrosine phosp 98.8 1.4E-08 3.1E-13 105.0 9.5 94 169-270 87-182 (225)
41 TIGR00147 lipid kinase, YegS/R 98.7 7.6E-07 1.6E-11 96.5 20.6 109 580-701 2-118 (293)
42 KOG1719 Dual specificity phosp 98.3 3.9E-06 8.5E-11 83.6 9.4 99 167-270 42-144 (183)
43 PF14566 PTPlike_phytase: Inos 98.2 2.5E-06 5.5E-11 84.8 7.1 62 197-258 84-146 (149)
44 KOG2836 Protein tyrosine phosp 98.2 8.5E-06 1.8E-10 79.5 9.5 106 157-270 18-131 (173)
45 COG2453 CDC14 Predicted protei 98.1 5.5E-06 1.2E-10 84.7 7.9 75 201-275 68-146 (180)
46 KOG1716 Dual specificity phosp 98.1 1.8E-05 4E-10 86.4 10.4 116 155-279 79-199 (285)
47 KOG1717 Dual specificity phosp 97.9 4.1E-05 8.9E-10 82.1 9.0 105 156-269 177-285 (343)
48 smart00404 PTPc_motif Protein 97.8 3.8E-05 8.3E-10 69.1 5.6 53 208-260 5-63 (105)
49 smart00012 PTPc_DSPc Protein t 97.8 3.8E-05 8.3E-10 69.1 5.6 53 208-260 5-63 (105)
50 KOG1718 Dual specificity phosp 97.7 0.0003 6.4E-09 71.4 10.2 102 156-268 22-127 (198)
51 PRK00861 putative lipid kinase 97.5 0.046 9.9E-07 60.0 25.9 107 580-701 3-116 (300)
52 PRK13057 putative lipid kinase 97.5 0.0029 6.4E-08 68.9 16.3 60 642-701 48-109 (287)
53 PRK12361 hypothetical protein; 97.2 0.042 9.1E-07 65.5 22.1 108 579-701 242-360 (547)
54 PRK13059 putative lipid kinase 97.1 0.06 1.3E-06 59.2 20.8 108 580-701 2-117 (295)
55 PRK13337 putative lipid kinase 96.8 0.11 2.4E-06 57.3 20.3 106 580-701 2-118 (304)
56 cd00047 PTPc Protein tyrosine 96.8 0.0021 4.5E-08 67.4 6.5 55 217-271 142-207 (231)
57 PRK13055 putative lipid kinase 96.6 0.45 9.9E-06 53.4 23.5 106 580-701 3-121 (334)
58 smart00194 PTPc Protein tyrosi 96.6 0.0053 1.1E-07 65.6 7.4 55 217-271 170-234 (258)
59 COG1597 LCB5 Sphingosine kinas 96.3 0.45 9.9E-06 52.9 20.8 105 580-701 3-119 (301)
60 PRK11914 diacylglycerol kinase 96.2 0.031 6.8E-07 61.4 11.0 109 579-701 8-124 (306)
61 COG5599 PTP2 Protein tyrosine 96.1 0.0045 9.8E-08 67.0 3.5 42 216-257 196-239 (302)
62 PHA02740 protein tyrosine phos 95.6 0.015 3.2E-07 64.5 5.4 22 236-257 221-242 (298)
63 PRK15375 pathogenicity island 95.5 0.033 7.2E-07 65.4 7.9 65 220-285 439-518 (535)
64 KOG2283 Clathrin coat dissocia 95.5 0.011 2.4E-07 68.6 4.1 90 176-275 53-148 (434)
65 COG3199 Predicted inorganic po 95.5 0.021 4.6E-07 64.0 6.0 59 644-703 100-160 (355)
66 PRK13054 lipid kinase; Reviewe 95.4 0.04 8.8E-07 60.5 7.8 107 579-701 3-119 (300)
67 PHA02742 protein tyrosine phos 95.4 0.016 3.5E-07 64.2 4.7 22 236-257 229-250 (303)
68 PF13348 Y_phosphatase3C: Tyro 95.3 0.0029 6.2E-08 54.7 -1.2 37 290-326 30-66 (68)
69 PRK01415 hypothetical protein; 95.3 0.16 3.5E-06 55.2 11.8 169 69-259 14-193 (247)
70 PHA02747 protein tyrosine phos 95.1 0.024 5.2E-07 63.1 4.8 21 237-257 230-250 (312)
71 PHA02746 protein tyrosine phos 94.8 0.035 7.7E-07 62.1 5.0 21 237-257 248-268 (323)
72 KOG0792 Protein tyrosine phosp 94.7 0.035 7.5E-07 69.2 5.1 34 221-254 1045-1081(1144)
73 PF00102 Y_phosphatase: Protei 94.5 0.037 8E-07 57.1 4.2 40 220-259 151-193 (235)
74 PHA02738 hypothetical protein; 94.5 0.045 9.9E-07 61.2 5.0 22 236-257 227-248 (320)
75 PLN02727 NAD kinase 94.5 0.044 9.6E-07 68.1 5.2 81 412-499 533-614 (986)
76 PF00781 DAGK_cat: Diacylglyce 94.2 0.082 1.8E-06 50.9 5.6 35 645-679 55-93 (130)
77 PLN02160 thiosulfate sulfurtra 94.2 0.18 3.9E-06 49.5 8.1 87 163-263 16-106 (136)
78 TIGR03702 lip_kinase_YegS lipi 93.7 0.25 5.3E-06 54.3 8.8 59 643-701 51-115 (293)
79 cd01523 RHOD_Lact_B Member of 93.3 0.26 5.7E-06 44.9 6.9 85 165-264 2-87 (100)
80 COG5350 Predicted protein tyro 92.9 0.5 1.1E-05 48.0 8.5 79 174-256 30-113 (172)
81 PLN02958 diacylglycerol kinase 92.9 0.42 9.2E-06 56.5 9.5 113 573-701 105-238 (481)
82 cd01533 4RHOD_Repeat_2 Member 92.7 0.46 9.9E-06 44.2 7.7 81 163-264 11-92 (109)
83 PLN02204 diacylglycerol kinase 92.7 0.59 1.3E-05 56.5 10.4 114 538-664 105-238 (601)
84 cd01518 RHOD_YceA Member of th 92.6 0.43 9.2E-06 43.7 7.2 85 163-264 3-87 (101)
85 PRK05320 rhodanese superfamily 92.4 0.63 1.4E-05 50.8 9.4 168 69-259 12-197 (257)
86 KOG0789 Protein tyrosine phosp 91.3 0.29 6.2E-06 55.6 5.5 23 235-257 298-320 (415)
87 KOG2386 mRNA capping enzyme, g 91.2 0.25 5.4E-06 56.8 4.7 102 163-270 47-159 (393)
88 KOG0791 Protein tyrosine phosp 91.0 0.29 6.3E-06 55.5 5.0 45 215-259 262-310 (374)
89 smart00046 DAGKc Diacylglycero 91.0 0.26 5.5E-06 47.6 4.1 35 644-678 49-88 (124)
90 cd01448 TST_Repeat_1 Thiosulfa 90.7 1.1 2.4E-05 42.2 8.0 95 165-264 3-106 (122)
91 KOG0790 Protein tyrosine phosp 89.2 0.15 3.3E-06 58.7 1.0 33 221-253 431-468 (600)
92 COG0607 PspE Rhodanese-related 87.8 1.4 3.1E-05 40.1 6.3 74 166-259 9-83 (110)
93 cd01519 RHOD_HSP67B2 Member of 87.7 1.5 3.2E-05 40.1 6.3 87 165-264 2-92 (106)
94 COG1054 Predicted sulfurtransf 86.6 7.9 0.00017 43.4 12.0 204 69-325 14-234 (308)
95 cd01534 4RHOD_Repeat_3 Member 86.5 3.2 6.9E-05 37.6 7.7 79 165-264 2-82 (95)
96 PF00581 Rhodanese: Rhodanese- 86.2 4.5 9.6E-05 36.7 8.6 80 165-256 1-86 (113)
97 KOG1530 Rhodanese-related sulf 86.1 1.9 4.1E-05 42.9 6.3 82 165-259 26-111 (136)
98 cd01528 RHOD_2 Member of the R 85.9 2.6 5.6E-05 38.5 6.8 81 163-264 1-84 (101)
99 cd01527 RHOD_YgaP Member of th 85.7 1.6 3.5E-05 39.6 5.4 74 163-259 3-76 (99)
100 KOG4228 Protein tyrosine phosp 85.6 0.47 1E-05 60.1 2.3 33 221-253 712-747 (1087)
101 cd01520 RHOD_YbbB Member of th 85.6 3.1 6.7E-05 40.1 7.5 28 234-263 84-112 (128)
102 KOG0793 Protein tyrosine phosp 84.4 2.1 4.6E-05 52.0 6.9 48 221-268 909-963 (1004)
103 cd01444 GlpE_ST GlpE sulfurtra 84.1 3.3 7.1E-05 37.0 6.6 79 164-263 2-81 (96)
104 TIGR02482 PFKA_ATP 6-phosphofr 83.9 1.1 2.4E-05 50.0 4.2 54 643-698 90-153 (301)
105 PRK14071 6-phosphofructokinase 83.7 0.99 2.1E-05 51.6 3.7 54 644-699 107-170 (360)
106 COG0205 PfkA 6-phosphofructoki 83.7 1.2 2.6E-05 50.8 4.3 53 643-697 93-155 (347)
107 cd01449 TST_Repeat_2 Thiosulfa 83.6 1.8 3.8E-05 40.4 4.8 95 165-264 2-104 (118)
108 cd01524 RHOD_Pyr_redox Member 83.5 4.4 9.6E-05 36.2 7.1 75 165-263 2-76 (90)
109 PRK09629 bifunctional thiosulf 83.3 6.2 0.00013 48.3 10.4 173 69-263 61-248 (610)
110 KOG4471 Phosphatidylinositol 3 82.9 1.6 3.4E-05 52.4 4.9 28 233-260 371-398 (717)
111 cd01522 RHOD_1 Member of the R 82.4 7.3 0.00016 37.0 8.5 86 165-264 2-90 (117)
112 COG2897 SseA Rhodanese-related 82.0 4.3 9.3E-05 45.2 7.7 132 114-260 117-257 (285)
113 PLN02723 3-mercaptopyruvate su 80.7 5.2 0.00011 44.9 7.9 43 219-263 252-294 (320)
114 PRK14072 6-phosphofructokinase 80.7 1.8 3.8E-05 50.6 4.3 53 643-697 102-169 (416)
115 PRK11493 sseA 3-mercaptopyruva 80.7 5.5 0.00012 43.6 8.0 43 220-264 215-257 (281)
116 PRK00162 glpE thiosulfate sulf 80.6 6.7 0.00014 36.3 7.4 78 163-263 6-83 (108)
117 PTZ00286 6-phospho-1-fructokin 80.4 2 4.4E-05 50.7 4.7 53 643-697 175-242 (459)
118 cd01530 Cdc25 Cdc25 phosphatas 79.9 5.1 0.00011 38.5 6.6 25 234-259 66-91 (121)
119 PF06602 Myotub-related: Myotu 79.8 2.3 5E-05 48.5 4.8 31 228-259 224-254 (353)
120 cd01526 RHOD_ThiF Member of th 78.2 5.7 0.00012 37.8 6.3 86 163-263 9-97 (122)
121 PRK06555 pyrophosphate--fructo 78.2 2 4.3E-05 49.9 3.7 54 643-698 111-179 (403)
122 PRK05600 thiamine biosynthesis 77.6 4.8 0.0001 46.2 6.6 85 163-263 272-357 (370)
123 cd00763 Bacterial_PFK Phosphof 77.5 2.3 5E-05 47.9 3.9 53 643-698 91-153 (317)
124 PRK06830 diphosphate--fructose 77.5 2.5 5.5E-05 49.7 4.3 123 572-697 73-238 (443)
125 PLN02564 6-phosphofructokinase 76.6 2.7 5.8E-05 49.9 4.3 53 643-697 175-242 (484)
126 PLN02884 6-phosphofructokinase 76.6 2.3 5E-05 49.5 3.7 124 572-698 46-210 (411)
127 KOG4435 Predicted lipid kinase 76.3 8 0.00017 44.8 7.6 85 644-739 116-213 (535)
128 TIGR02483 PFK_mixed phosphofru 76.2 2.5 5.4E-05 47.8 3.7 53 643-698 93-155 (324)
129 PRK10287 thiosulfate:cyanide s 73.8 6.5 0.00014 37.2 5.3 65 178-263 21-85 (104)
130 cd08194 Fe-ADH6 Iron-containin 73.0 5.9 0.00013 45.2 5.8 88 579-676 23-130 (375)
131 PRK06895 putative anthranilate 72.4 10 0.00022 39.1 6.8 75 580-678 2-82 (190)
132 TIGR02981 phageshock_pspE phag 71.9 11 0.00024 35.3 6.4 67 176-263 17-83 (101)
133 PRK00142 putative rhodanese-re 71.6 7.5 0.00016 43.8 6.0 79 161-259 111-193 (314)
134 TIGR03865 PQQ_CXXCW PQQ-depend 69.3 30 0.00065 35.2 9.2 97 163-263 37-142 (162)
135 cd08193 HVD 5-hydroxyvalerate 69.2 6.7 0.00015 44.7 5.1 88 579-676 26-133 (376)
136 cd08169 DHQ-like Dehydroquinat 68.2 11 0.00025 42.7 6.6 92 579-676 23-117 (344)
137 PRK03202 6-phosphofructokinase 67.9 4.9 0.00011 45.4 3.6 52 643-697 92-153 (320)
138 PF00365 PFK: Phosphofructokin 67.8 2.2 4.7E-05 47.2 0.8 53 643-697 91-153 (282)
139 COG1454 EutG Alcohol dehydroge 67.6 6.5 0.00014 45.4 4.6 77 579-665 29-106 (377)
140 PRK09860 putative alcohol dehy 67.5 7.8 0.00017 44.6 5.2 88 579-676 31-138 (383)
141 cd01529 4RHOD_Repeats Member o 67.1 11 0.00023 34.1 5.0 29 234-264 54-82 (96)
142 cd08176 LPO Lactadehyde:propan 66.7 8.4 0.00018 44.0 5.2 94 580-683 29-144 (377)
143 cd01447 Polysulfide_ST Polysul 66.7 20 0.00043 32.3 6.8 28 234-263 59-86 (103)
144 PRK07765 para-aminobenzoate sy 66.6 11 0.00024 40.0 5.7 79 581-678 2-86 (214)
145 PRK11784 tRNA 2-selenouridine 66.3 20 0.00044 40.9 8.1 27 235-263 87-114 (345)
146 cd00363 PFK Phosphofructokinas 65.6 4.5 9.7E-05 46.0 2.7 54 643-698 91-159 (338)
147 TIGR00566 trpG_papA glutamine 64.5 13 0.00029 38.3 5.8 34 644-678 43-82 (188)
148 TIGR02477 PFKA_PPi diphosphate 62.5 7.2 0.00016 47.1 3.8 34 643-676 160-198 (539)
149 cd01525 RHOD_Kc Member of the 62.3 18 0.00039 32.9 5.6 26 236-263 65-90 (105)
150 cd08181 PPD-like 1,3-propanedi 62.3 12 0.00026 42.5 5.4 87 580-676 26-132 (357)
151 cd08185 Fe-ADH1 Iron-containin 61.8 14 0.00031 42.2 5.9 75 580-664 26-102 (380)
152 PLN02251 pyrophosphate-depende 61.7 7.6 0.00016 47.1 3.8 52 644-697 190-258 (568)
153 KOG1089 Myotubularin-related p 61.3 13 0.00029 44.9 5.6 29 234-262 342-370 (573)
154 PRK07085 diphosphate--fructose 61.0 8 0.00017 46.9 3.8 32 644-675 164-200 (555)
155 smart00450 RHOD Rhodanese Homo 60.9 35 0.00075 29.6 7.0 29 234-264 54-82 (100)
156 cd08178 AAD_C C-terminal alcoh 60.1 9.6 0.00021 44.0 4.2 77 579-665 21-98 (398)
157 PRK10624 L-1,2-propanediol oxi 59.9 13 0.00028 42.7 5.1 75 580-664 31-106 (382)
158 cd08171 GlyDH-like2 Glycerol d 59.6 17 0.00036 41.2 5.9 97 580-686 23-122 (345)
159 PLN03028 pyrophosphate--fructo 59.3 8.8 0.00019 47.0 3.8 32 644-675 173-209 (610)
160 cd08179 NADPH_BDH NADPH-depend 59.1 14 0.00031 42.2 5.3 75 580-664 24-100 (375)
161 PRK06186 hypothetical protein; 58.5 24 0.00052 38.3 6.5 36 642-677 51-91 (229)
162 PRK00002 aroB 3-dehydroquinate 58.5 21 0.00046 40.6 6.5 91 579-676 31-126 (358)
163 cd08175 G1PDH Glycerol-1-phosp 58.4 18 0.00038 40.9 5.8 86 580-676 24-112 (348)
164 cd07766 DHQ_Fe-ADH Dehydroquin 58.3 15 0.00033 40.9 5.2 33 643-676 77-112 (332)
165 cd00765 Pyrophosphate_PFK Phos 58.1 9.5 0.00021 46.2 3.8 43 643-685 165-224 (550)
166 cd08551 Fe-ADH iron-containing 58.1 12 0.00025 42.6 4.4 96 579-684 23-140 (370)
167 cd01521 RHOD_PspE2 Member of t 58.0 21 0.00045 33.3 5.3 80 162-263 8-91 (110)
168 cd08170 GlyDH Glycerol dehydro 58.0 22 0.00049 40.1 6.6 86 579-676 22-109 (351)
169 PTZ00468 phosphofructokinase f 58.0 8.6 0.00019 50.4 3.6 44 643-686 799-864 (1328)
170 cd08192 Fe-ADH7 Iron-containin 57.9 9.9 0.00022 43.3 3.8 76 579-664 24-100 (370)
171 TIGR01357 aroB 3-dehydroquinat 57.9 23 0.00051 39.9 6.7 90 579-676 20-115 (344)
172 TIGR02638 lactal_redase lactal 57.4 14 0.00031 42.2 5.0 76 579-664 29-105 (379)
173 cd01443 Cdc25_Acr2p Cdc25 enzy 57.3 42 0.00091 31.4 7.3 78 164-257 4-87 (113)
174 cd08173 Gro1PDH Sn-glycerol-1- 57.3 27 0.00058 39.4 7.0 82 580-676 26-110 (339)
175 cd08186 Fe-ADH8 Iron-containin 56.6 15 0.00033 42.1 5.0 76 579-664 26-103 (383)
176 TIGR02478 6PF1K_euk 6-phosphof 56.5 9.7 0.00021 47.7 3.6 53 643-697 477-545 (745)
177 cd08195 DHQS Dehydroquinate sy 56.2 23 0.00049 40.1 6.2 91 579-676 24-119 (345)
178 cd00764 Eukaryotic_PFK Phospho 56.1 10 0.00022 47.5 3.8 54 643-698 477-546 (762)
179 PRK06490 glutamine amidotransf 56.0 25 0.00054 38.0 6.2 36 643-678 51-96 (239)
180 cd08187 BDH Butanol dehydrogen 55.8 17 0.00037 41.7 5.2 88 579-676 28-136 (382)
181 PRK11493 sseA 3-mercaptopyruva 55.7 46 0.00099 36.5 8.3 97 164-263 7-113 (281)
182 PTZ00287 6-phosphofructokinase 55.5 12 0.00025 49.6 4.1 52 644-697 928-996 (1419)
183 PF04343 DUF488: Protein of un 55.0 18 0.0004 34.7 4.5 46 169-214 6-53 (122)
184 cd01743 GATase1_Anthranilate_S 54.6 11 0.00024 38.5 3.1 36 643-678 41-81 (184)
185 KOG1115 Ceramide kinase [Lipid 54.4 12 0.00027 43.4 3.7 77 576-662 155-235 (516)
186 PRK05670 anthranilate synthase 54.0 18 0.00039 37.3 4.6 66 595-678 11-82 (189)
187 PF04179 Init_tRNA_PT: Initiat 53.5 44 0.00095 39.7 8.1 55 203-257 336-397 (451)
188 PRK06203 aroB 3-dehydroquinate 53.4 26 0.00057 40.6 6.2 33 643-676 110-145 (389)
189 PRK07053 glutamine amidotransf 53.4 36 0.00079 36.6 6.9 80 579-678 2-93 (234)
190 PLN02834 3-dehydroquinate synt 53.3 19 0.00041 42.4 5.1 92 579-677 100-198 (433)
191 PRK08762 molybdopterin biosynt 53.1 37 0.00081 38.9 7.4 79 163-263 4-82 (376)
192 cd08189 Fe-ADH5 Iron-containin 52.7 23 0.00051 40.4 5.7 76 579-664 26-102 (374)
193 PRK07411 hypothetical protein; 52.6 21 0.00046 41.3 5.4 83 163-263 283-367 (390)
194 cd08183 Fe-ADH2 Iron-containin 52.2 25 0.00053 40.3 5.7 71 580-664 23-94 (374)
195 KOG0782 Predicted diacylglycer 52.2 38 0.00082 40.9 7.1 67 647-718 419-496 (1004)
196 cd08177 MAR Maleylacetate redu 52.1 17 0.00037 40.9 4.4 85 579-676 23-109 (337)
197 cd01531 Acr2p Eukaryotic arsen 52.1 49 0.0011 30.8 6.8 78 164-257 4-83 (113)
198 PF02126 PTE: Phosphotriestera 51.9 23 0.00049 39.9 5.3 100 166-268 41-186 (308)
199 cd08182 HEPD Hydroxyethylphosp 51.6 24 0.00051 40.2 5.5 74 579-665 23-97 (367)
200 PRK01269 tRNA s(4)U8 sulfurtra 51.2 22 0.00047 42.3 5.3 67 178-263 408-474 (482)
201 PRK07878 molybdopterin biosynt 50.6 34 0.00074 39.6 6.6 80 163-263 288-368 (392)
202 cd08180 PDD 1,3-propanediol de 49.7 27 0.00058 39.3 5.4 87 579-676 22-117 (332)
203 PF05925 IpgD: Enterobacterial 49.5 5.5 0.00012 47.4 0.0 23 235-257 452-474 (559)
204 PRK15454 ethanol dehydrogenase 49.1 19 0.00041 41.7 4.2 76 579-664 49-125 (395)
205 CHL00101 trpG anthranilate syn 48.8 16 0.00034 37.8 3.2 35 644-678 43-82 (190)
206 cd08191 HHD 6-hydroxyhexanoate 48.6 26 0.00055 40.3 5.2 88 580-676 23-129 (386)
207 TIGR00337 PyrG CTP synthase. C 48.6 39 0.00085 40.8 6.8 85 579-677 289-381 (525)
208 PLN02335 anthranilate synthase 48.5 42 0.0009 35.9 6.4 77 579-678 18-101 (222)
209 TIGR01815 TrpE-clade3 anthrani 47.8 39 0.00084 42.4 6.8 78 579-678 516-598 (717)
210 cd08549 G1PDH_related Glycerol 47.7 32 0.00069 38.8 5.7 86 580-676 25-112 (332)
211 PRK15378 inositol phosphate ph 47.5 12 0.00026 44.4 2.2 19 240-258 460-478 (564)
212 PRK09423 gldA glycerol dehydro 47.1 49 0.0011 37.7 7.1 85 580-676 30-116 (366)
213 TIGR02478 6PF1K_euk 6-phosphof 47.0 16 0.00034 45.9 3.4 54 643-698 93-178 (745)
214 PRK07649 para-aminobenzoate/an 46.2 31 0.00068 36.0 4.9 64 596-678 12-82 (195)
215 cd08190 HOT Hydroxyacid-oxoaci 46.1 20 0.00044 41.7 3.9 75 580-664 24-99 (414)
216 PF13685 Fe-ADH_2: Iron-contai 45.9 66 0.0014 35.3 7.5 90 578-684 18-117 (250)
217 PRK11366 puuD gamma-glutamyl-g 44.7 50 0.0011 36.0 6.4 67 597-678 29-117 (254)
218 PRK13566 anthranilate synthase 44.6 69 0.0015 40.3 8.3 79 578-678 525-608 (720)
219 TIGR03405 Phn_Fe-ADH phosphona 44.4 28 0.00061 39.6 4.6 76 580-664 24-99 (355)
220 PF06283 ThuA: Trehalose utili 44.2 77 0.0017 33.2 7.5 98 581-702 1-109 (217)
221 PTZ00468 phosphofructokinase f 44.2 20 0.00044 47.2 3.7 34 643-676 195-233 (1328)
222 KOG1116 Sphingosine kinase, in 44.0 53 0.0012 40.0 6.9 86 577-677 177-276 (579)
223 PRK00843 egsA NAD(P)-dependent 43.9 1.2E+02 0.0025 34.6 9.4 82 580-676 35-119 (350)
224 cd08172 GlyDH-like1 Glycerol d 43.8 39 0.00085 38.2 5.6 83 580-676 24-108 (347)
225 cd08197 DOIS 2-deoxy-scyllo-in 43.6 44 0.00096 38.3 6.0 87 579-676 23-118 (355)
226 TIGR03167 tRNA_sel_U_synt tRNA 43.4 41 0.00089 38.0 5.6 24 238-263 76-100 (311)
227 cd01532 4RHOD_Repeat_1 Member 42.2 44 0.00096 30.1 4.7 28 235-263 49-77 (92)
228 smart00340 HALZ homeobox assoc 42.1 14 0.0003 30.0 1.2 9 80-88 9-17 (44)
229 cd08199 EEVS 2-epi-5-epi-valio 42.0 51 0.0011 37.7 6.2 93 577-676 24-122 (354)
230 cd03174 DRE_TIM_metallolyase D 41.6 1.5E+02 0.0032 31.6 9.3 80 167-247 119-201 (265)
231 cd00764 Eukaryotic_PFK Phospho 41.4 23 0.0005 44.6 3.5 53 643-697 96-180 (762)
232 PRK06774 para-aminobenzoate sy 39.1 25 0.00053 36.3 2.9 74 582-678 2-82 (191)
233 cd00158 RHOD Rhodanese Homolog 39.0 59 0.0013 27.9 4.9 25 234-259 48-72 (89)
234 PRK13805 bifunctional acetalde 38.8 49 0.0011 42.2 6.0 78 578-664 479-558 (862)
235 KOG4228 Protein tyrosine phosp 38.7 18 0.00039 46.6 2.1 24 236-259 1018-1041(1087)
236 PRK10310 PTS system galactitol 37.1 2.4E+02 0.0052 26.2 8.8 90 580-700 3-94 (94)
237 PRK11574 oxidative-stress-resi 36.3 1.2E+02 0.0026 31.0 7.4 39 643-681 65-112 (196)
238 cd03132 GATase1_catalase Type 36.0 1.6E+02 0.0035 28.4 7.9 94 580-678 2-105 (142)
239 PF08357 SEFIR: SEFIR domain; 35.5 42 0.00092 32.8 3.8 78 580-665 1-79 (150)
240 cd07943 DRE_TIM_HOA 4-hydroxy- 34.5 2.4E+02 0.0053 30.6 9.7 81 166-247 115-196 (263)
241 PF00465 Fe-ADH: Iron-containi 34.4 25 0.00054 39.9 2.2 77 580-665 22-98 (366)
242 cd01744 GATase1_CPSase Small c 33.7 38 0.00081 34.6 3.2 35 644-678 39-79 (178)
243 TIGR03217 4OH_2_O_val_ald 4-hy 33.6 2.6E+02 0.0056 32.0 10.0 82 165-247 116-199 (333)
244 COG1819 Glycosyl transferases, 33.6 1.8E+02 0.0038 34.0 8.9 61 637-701 293-369 (406)
245 PRK05380 pyrG CTP synthetase; 33.5 94 0.002 37.8 6.8 37 641-677 340-381 (533)
246 cd01746 GATase1_CTP_Synthase T 33.5 80 0.0017 34.2 5.7 37 642-678 53-94 (235)
247 cd08188 Fe-ADH4 Iron-containin 33.4 40 0.00087 38.6 3.7 76 579-664 28-104 (377)
248 cd01535 4RHOD_Repeat_4 Member 32.2 1.9E+02 0.004 28.9 7.7 34 222-258 37-70 (145)
249 PRK07567 glutamine amidotransf 31.2 39 0.00084 36.6 2.9 36 643-678 50-103 (242)
250 cd07939 DRE_TIM_NifV Streptomy 30.9 3.4E+02 0.0074 29.4 10.1 78 169-247 116-193 (259)
251 COG4069 Uncharacterized protei 29.7 45 0.00097 37.6 3.0 37 640-677 262-298 (367)
252 cd07944 DRE_TIM_HOA_like 4-hyd 29.4 3.2E+02 0.0069 30.1 9.6 79 168-247 114-194 (266)
253 PRK09393 ftrA transcriptional 29.3 1.2E+02 0.0025 33.8 6.3 37 642-678 73-116 (322)
254 PRK12564 carbamoyl phosphate s 28.9 73 0.0016 36.8 4.7 74 580-678 178-258 (360)
255 COG1370 Prefoldin, molecular c 28.3 2.2E+02 0.0048 29.3 7.3 111 734-852 29-153 (155)
256 PRK08857 para-aminobenzoate sy 27.7 64 0.0014 33.4 3.7 34 644-678 43-82 (193)
257 cd08196 DHQS-like1 Dehydroquin 27.6 1.1E+02 0.0025 34.9 5.9 77 580-665 20-96 (346)
258 PF00117 GATase: Glutamine ami 27.3 28 0.00061 35.4 1.0 37 642-678 40-82 (192)
259 cd08198 DHQS-like2 Dehydroquin 27.2 1.1E+02 0.0024 35.5 5.8 33 643-676 98-133 (369)
260 COG0745 OmpR Response regulato 27.1 1.6E+02 0.0035 31.6 6.7 89 595-701 12-119 (229)
261 PRK08195 4-hyroxy-2-oxovalerat 27.1 3.7E+02 0.008 30.7 9.9 82 165-247 117-200 (337)
262 PRK10586 putative oxidoreducta 27.0 69 0.0015 36.8 4.1 40 643-683 85-127 (362)
263 PRK09065 glutamine amidotransf 26.8 53 0.0011 35.4 3.0 36 643-678 53-98 (237)
264 PRK08250 glutamine amidotransf 26.6 59 0.0013 35.0 3.3 36 643-678 44-94 (235)
265 cd01745 GATase1_2 Subgroup of 25.7 1E+02 0.0022 31.9 4.7 36 643-678 52-110 (189)
266 PRK11858 aksA trans-homoaconit 24.5 4.6E+02 0.01 30.3 10.2 78 169-247 122-199 (378)
267 COG1570 XseA Exonuclease VII, 24.0 2.7E+02 0.0058 33.3 8.1 98 576-691 132-244 (440)
268 TIGR02990 ectoine_eutA ectoine 23.9 2.6E+02 0.0057 30.5 7.6 95 166-265 109-209 (239)
269 cd03784 GT1_Gtf_like This fami 23.8 98 0.0021 34.9 4.6 59 637-699 297-371 (401)
270 cd03128 GAT_1 Type 1 glutamine 23.5 92 0.002 25.2 3.3 38 642-679 44-90 (92)
271 COG0693 ThiJ Putative intracel 22.9 2.8E+02 0.0061 28.1 7.3 39 643-681 65-112 (188)
272 PRK13527 glutamine amidotransf 22.5 61 0.0013 33.7 2.4 36 643-678 42-87 (200)
273 TIGR00888 guaA_Nterm GMP synth 22.5 59 0.0013 33.3 2.3 34 645-678 42-80 (188)
274 TIGR01426 MGT glycosyltransfer 22.4 75 0.0016 35.9 3.3 33 640-676 287-319 (392)
275 cd01742 GATase1_GMP_Synthase T 22.0 52 0.0011 33.2 1.7 36 643-678 40-80 (181)
276 cd08550 GlyDH-like Glycerol_de 21.5 83 0.0018 35.6 3.4 33 643-676 76-109 (349)
277 cd07940 DRE_TIM_IPMS 2-isoprop 21.3 5.8E+02 0.013 27.8 9.8 78 169-247 120-200 (268)
278 TIGR01368 CPSaseIIsmall carbam 21.2 1.2E+02 0.0026 35.0 4.6 73 580-678 174-253 (358)
279 TIGR02090 LEU1_arch isopropylm 21.1 6.6E+02 0.014 28.9 10.5 79 168-247 117-195 (363)
280 PRK09389 (R)-citramalate synth 20.9 5.5E+02 0.012 30.9 10.2 78 169-247 120-197 (488)
281 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.7 2.9E+02 0.0063 30.4 7.3 80 167-247 122-203 (275)
282 TIGR02660 nifV_homocitr homoci 20.6 6.3E+02 0.014 29.0 10.2 78 169-247 119-196 (365)
283 PRK01175 phosphoribosylformylg 20.3 2.3E+02 0.0051 31.2 6.4 42 642-683 46-109 (261)
284 PRK13181 hisH imidazole glycer 20.0 92 0.002 32.3 3.1 35 643-678 36-82 (199)
285 cd08174 G1PDH-like Glycerol-1- 20.0 1.1E+02 0.0023 34.5 3.8 32 644-676 75-107 (331)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=6.2e-217 Score=1877.06 Aligned_cols=868 Identities=74% Similarity=1.125 Sum_probs=814.8
Q ss_pred CCCccCCCccceeeeeccCCCCccchhhhHHHHHhhHhhhccccccccccCcccccccchhcccccccccCCchHHhHHH
Q 002733 1 MDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQLPPLAIFRSE 80 (887)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~pp~~~~r~~ 80 (887)
|+|||||+||||+|+|||++||||+||||||+|||||++|||+||+||++||++|||+||++|+|+||++|||||+||.|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 185 (986)
T PLN02727 106 MDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGRSSIMSSFRGSEVSAMEDKLPPLAIFRGE 185 (986)
T ss_pred HHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhccchhhhhhcccchhhhhhccCChHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCccCCcchhHHHHHHhhhhccccCCCCCCCCCCCccccccccceEecCCCcccccCCCcceEEE
Q 002733 81 MKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCR 160 (887)
Q Consensus 81 ~~~~~~~l~~~l~~~~~~~~~~~~~i~rkl~rl~n~~~d~g~p~~~gyp~~t~~~Nf~~V~~s~~~~~~~~~~~e~~LYR 160 (887)
|||||||||+|||+||+|+++||++||||||||+|+|||.||||++||||++.|+||.+||++++++|+.++|+|..+||
T Consensus 186 ~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~~~~~n~~~v~~~~~~~~~~~~~~~~~~~r 265 (986)
T PLN02727 186 MKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCHTLFANWNPVYLSTSKEDIDSKESEAAFWR 265 (986)
T ss_pred HHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCcccccccceeeecccccccccccceeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002733 161 GGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 240 (887)
Q Consensus 161 Sgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVL 240 (887)
|+||+++++++|++.|||||||||++..+..++...++++++..|++|+|+||.....|+.+++.+|++++.+..++|||
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~slpkPVL 345 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIY 345 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhhcCCCEE
Confidence 99999999999999999999999998732344545678899999999999999888999999999999999657799999
Q ss_pred EeCccCCChHHHHHHHHHHHcCCCH-HHHHHHhcccccccccchhhhhccccccchhhhhhhcchhhhhhhhhccccccc
Q 002733 241 LHSKEGVWRTYAMVSRWRQYMARCA-SQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVF 319 (887)
Q Consensus 241 VHC~aGKDRTG~lvALll~~lGv~~-eeIi~DYllsn~~~~~~~~~~~~~~m~~~~~~l~~~~g~~e~~~~~~~~~~~~~ 319 (887)
+||++|.||||+|+|||++|+-.+. .. +..++.+.+-..+.+++|++++.+++.++.++.+
T Consensus 346 vHCKSGarRAGamvA~yl~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (986)
T PLN02727 346 LHSKEGVWRTSAMVSRWKQYMTRSAERL------------------LGQNSVVNGNGKLDQETGSLQETNDKDSSSNGSE 407 (986)
T ss_pred EECCCCCchHHHHHHHHHHHHcccchhh------------------hccccccccCcccccccCccccccccccccCccc
Confidence 9999999999999999999754332 11 1222444455677899999999999999999999
Q ss_pred cccccccccccccCCCcccc-cccccccccchhhccccCccccccccccCCccccCCCCcccchHHHhhhhhccccCCCc
Q 002733 320 GFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDPFKAQVPPSNFVSKKEMSRFFRSKTTSPPR 398 (887)
Q Consensus 320 ~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (887)
.+.....++++.++++++|| +.++|++...+++. +++++++||++|+||||||+|||||||||||++|||+|+++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (986)
T PLN02727 408 SGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDPLKAQVPPCDVFSKKEMSKFFRSKKIYPPT 486 (986)
T ss_pred ccccccccccccccccccccccccccccccccccc-ccccccceeeeecCcccccCCCcccccHHHHHHHHhhcccCCcc
Confidence 99999999999999999999 99999999999999 88899999999999999999999999999999999999999999
Q ss_pred cccccccccccCC----------ccccCCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCccCcc
Q 002733 399 YFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGF 468 (887)
Q Consensus 399 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (887)
|+|||+|+|++|| ++|.+.+++++++|.++||+++++++.+++.|++.+.+.|.+||++++|+|++++.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s~d~qss~~~~~k~sNGss~~s~~s~s~~S 566 (986)
T PLN02727 487 YLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVAS 566 (986)
T ss_pred cccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccCccccchhhccccCCCCccccccCcccccc
Confidence 9999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCC-CcccccccccCCeeeeecccccceeEeeec
Q 002733 469 DRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-PIVGNMCASSTGVVRVQSRKKAEMFLVRTD 547 (887)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (887)
+..++.++++.+.+++|++|++.++++++.++++++||++++..+||++ .||||||||+||+||||+|||++||++|||
T Consensus 567 s~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 646 (986)
T PLN02727 567 SITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAIEGNMCASATGVVRVQSRRKAEMFLVRTD 646 (986)
T ss_pred cccCCccccCCCccccccCCCcccccccccccccccCCccccccccCccccccccccccccccEEeeccCCcceEEEEec
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CcceeeeeecCCCccccCCchhHHhhccccCCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCC
Q 002733 548 GFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGF 627 (887)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~p~~~~~~l~w~~~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~ 627 (887)
|||||||.+++|+++|+|||+||++|+|.++|++|+||+|+++++.+.+.+|++||.+++|++|+++++.++.+...+.+
T Consensus 647 ~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~ 726 (986)
T PLN02727 647 GFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGF 726 (986)
T ss_pred CcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccc
Confidence 99999999999999999999999999999999999999999998889999999999876699999999988766444444
Q ss_pred ccceeeeccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCce
Q 002733 628 GFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGV 707 (887)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~ 707 (887)
++...++..+..++.+.+|+||+||||||||+|+|++....+||||||+|+||||++++++++.+.|+++++|+|.++++
T Consensus 727 ~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGrLGFLTdi~~ee~~~~L~~Il~G~y~i~~~ 806 (986)
T PLN02727 727 GFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGV 806 (986)
T ss_pred cccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCccccccCCHHHHHHHHHHHHcCCcccccc
Confidence 33344444444566678999999999999999999999999999999999999999999999999999999999876667
Q ss_pred eeEEeeEEEEEEEeCCeecCCccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCcc
Q 002733 708 YITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMV 787 (887)
Q Consensus 708 ~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV 787 (887)
++++|++|+|+|.++|+.+....++|||||+|.|+..++|+.++|||||+++++|+||||||||||||||||||||||||
T Consensus 807 ~ie~R~~L~~~V~r~g~~i~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~l~tyrgDGLIVSTPTGSTAYSLSAGGPIV 886 (986)
T PLN02727 807 YITLRMRLRCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMV 886 (986)
T ss_pred ccceeeEEEEEEecCCcccccccceEEEEEEEecCCCccEEEEEEEECCEEeEEeecceEEEECCCchHHhHhhcCCcee
Confidence 88999999999988887654334679999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeecCCCCCCCCCeeeCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCc
Q 002733 788 HPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGD 867 (887)
Q Consensus 788 ~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d 867 (887)
||++++|+|||||||+|++||||||++++|+|++....+..++|++||+....|.+||+|.|++|++++++|+..++..+
T Consensus 887 hP~v~aIvITPIcPHSLs~RPIVLp~ds~I~IkI~~~sr~~a~Ls~DGq~~~~L~~GD~I~Ir~S~~~v~lVr~~~~~~d 966 (986)
T PLN02727 887 HPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRISMSQHPLPTVNKSDQTGD 966 (986)
T ss_pred CCCCCeEEEEecCcccCCCCCEEECCCCeEEEEEccCCCCceEEEECCCeeeecCCCCEEEEEECCceEEEEEeCCCCCC
Confidence 99999999999999999999999999999999997655556899999999999999999999999999999998775568
Q ss_pred hHHHHHhhcCCCCcCCCCCC
Q 002733 868 WFHSLVRCLNWNERLDQKAL 887 (887)
Q Consensus 868 ~f~~Lr~KL~Wg~r~~Qk~l 887 (887)
||++||+||+||+|.+||+|
T Consensus 967 Ff~~LR~KL~W~~r~~Qk~l 986 (986)
T PLN02727 967 WFRSLIRCLNWNERLDQKAL 986 (986)
T ss_pred HHHHHHHHhCCCcccccCCC
Confidence 99999999999999999997
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-75 Score=631.40 Aligned_cols=332 Identities=49% Similarity=0.836 Sum_probs=287.9
Q ss_pred ceeeeeecCCCccccC-CchhHHhhccccCCCEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEcCChhhHh--hcCC
Q 002733 550 SCNREKVTESSLAFTH-PSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--ARIP 625 (887)
Q Consensus 550 ~~~~~~~~~~~~~~~~-p~~~~~~l~w~~~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~-~~~V~ve~~~~~~~--~~~~ 625 (887)
||+++... ....+.+ +...+|.+.|.++|+.|+|.||.+.+..+..+++++||.... .+.|+++.++++.. ....
T Consensus 65 sn~~~~~~-~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~ 143 (409)
T KOG2178|consen 65 SNSRELMS-NVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGN 143 (409)
T ss_pred ccchhhhh-hhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccc
Confidence 56665222 2233333 345667899999999988888888888999999999997654 69999999987632 1100
Q ss_pred ---CCcc-ceeeec--cCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHc
Q 002733 626 ---GFGF-VQTFYL--QDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIY 699 (887)
Q Consensus 626 ---~~~~-~~~~~~--~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~ 699 (887)
.++. ...+|. ....++.+.+|+|||||||||+|+|+.+|++..|||+.|++|+|||||+|+++++++.|.++++
T Consensus 144 ~~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~ 223 (409)
T KOG2178|consen 144 LDESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLN 223 (409)
T ss_pred hhhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhc
Confidence 1110 111222 2236778889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCceeeEEeeEEEEEEEeCCeecC---CccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChh
Q 002733 700 GNNTLDGVYITLRMRLCCEIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGST 776 (887)
Q Consensus 700 G~~~~~~~~i~~R~rL~~~V~~~G~~~~---~~~~~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGST 776 (887)
|+ .++.+||||+|++.|.++... ...+++||||+|+||.++.|+.+++|+||+++|+++|||||||||||||
T Consensus 224 ~~-----~~v~lR~RL~C~i~rk~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGST 298 (409)
T KOG2178|consen 224 GR-----AAVNLRMRLRCSLKRKDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGST 298 (409)
T ss_pred Cc-----ceEeeeeeEEEEEEEecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchh
Confidence 98 468999999999998655421 1268999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCcee
Q 002733 777 AYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPI 856 (887)
Q Consensus 777 AYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l 856 (887)
|||+|||||||||+++||++||||||+|+|||||+|++.+|+|+++.++|..+|+++||+.+.++..||.|.|+.|.+++
T Consensus 299 AYS~sAGGSlvhP~vpAIlvTPICPhSLSFRPIIlPds~~L~I~i~~dsR~~awvSfDG~~r~El~~GD~i~I~tS~ypf 378 (409)
T KOG2178|consen 299 AYSASAGGSLVHPSVPAILVTPICPHSLSFRPIILPDSSELRVEVPLDSRSTAWVSFDGRPRQELSLGDYIDITTSRYPF 378 (409)
T ss_pred hhHhhcCCceecCCCCeEEEeccCCCcccccceEccCccEEEEEeCccccccceEEecCcchhhccCCceEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCCCchHHHHHhhcCCCCcCCCCCC
Q 002733 857 PTVNKSDQTGDWFHSLVRCLNWNERLDQKAL 887 (887)
Q Consensus 857 ~lV~~~~~~~d~f~~Lr~KL~Wg~r~~Qk~l 887 (887)
+.|+..++..|||++|.++|+||.|++||+|
T Consensus 379 Pti~~s~~~~dWf~sl~~~L~WN~r~rqk~~ 409 (409)
T KOG2178|consen 379 PTIISSDEESDWFESLARLLNWNVRKRQKPF 409 (409)
T ss_pred ceeecCcchhhHHHHHHHHcCCCchhhccCC
Confidence 9999998878999999999999999999986
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=5.4e-71 Score=622.79 Aligned_cols=318 Identities=45% Similarity=0.796 Sum_probs=272.5
Q ss_pred cCCchhHHhhccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCC-CCccceeeec-cCccc
Q 002733 564 THPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIP-GFGFVQTFYL-QDTSD 640 (887)
Q Consensus 564 ~~p~~~~~~l~w~~~p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 640 (887)
+.+|++|..|.|.++|++|+||.|+.. ++.+.+.+|++||.+++++.|+++++.+..+.... ..++...+.. ....+
T Consensus 179 ~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 258 (508)
T PLN02935 179 AERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILL 258 (508)
T ss_pred ccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhh
Confidence 456788889999999999999999875 67788999999997457899999887654331100 0011100000 11122
Q ss_pred ccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEE
Q 002733 641 LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF 720 (887)
Q Consensus 641 ~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~ 720 (887)
+...+|+||+||||||||+|+|.+....+||||||+|+||||++++++++++.|+++++|+ |.++.|+||+|.|.
T Consensus 259 l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~-----y~Ie~R~~L~~~v~ 333 (508)
T PLN02935 259 LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGP-----ISITLRHRLQCHII 333 (508)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCC-----ceEEEEeEEEEEEE
Confidence 4457899999999999999999999999999999999999999999999999999999998 56899999999998
Q ss_pred eCCeecC---CccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceee
Q 002733 721 RNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFT 797 (887)
Q Consensus 721 ~~G~~~~---~~~~~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlT 797 (887)
++|+.+. ...++||||++|.|+..++|+.++|||||+++++|+||||||||||||||||||||||||||++++|+||
T Consensus 334 ~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlT 413 (508)
T PLN02935 334 RDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFT 413 (508)
T ss_pred cCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEE
Confidence 7764321 0135799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCeeeCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcC
Q 002733 798 PICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 877 (887)
Q Consensus 798 PIcPhsLs~RPiVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~ 877 (887)
|||||+|++||||||++++|+|++....+..+++++||+....|.+||.|.|++|+.++++|+..+...+||++||+||+
T Consensus 414 PIcPHsLs~RPIVlp~~s~I~I~v~~~~~~~a~lsiDGq~~~~L~~GD~V~I~kS~~~v~lV~l~~~~~~Ff~~Lr~KL~ 493 (508)
T PLN02935 414 PICPHSLSFRPLILPEYVTIRVQVPFNSRGQAWASFDGKDRKQLSAGDALVCSMAPWPVPTACQVESTNDFLRSIHDGLH 493 (508)
T ss_pred ecCCCcCCCCCeEECCCCEEEEEEccCCCCceEEEEcCCcceecCCCCEEEEEECCCceEEEeeCCCCCCHHHHHHHHcC
Confidence 99999999999999999999999875444568999999999999999999999999999999876545699999999999
Q ss_pred CCCcCCCCC
Q 002733 878 WNERLDQKA 886 (887)
Q Consensus 878 Wg~r~~Qk~ 886 (887)
||.|.+|++
T Consensus 494 Wg~R~rq~~ 502 (508)
T PLN02935 494 WNLRKTQSF 502 (508)
T ss_pred CCccccccC
Confidence 999999985
No 4
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.1e-67 Score=573.03 Aligned_cols=295 Identities=26% Similarity=0.379 Sum_probs=255.7
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCc--c-ceeeeccCcccccCCccEEEEEcCCc
Q 002733 580 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--F-VQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 580 ~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
++|+|+.++.. ++.+.+.+|.+||. +.|++++++++.++.+. ..... . .......+..++.+.+|+||+|||||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~-~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG 79 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLE-AAGWEVVRASSSGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDG 79 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHH-HCCCEEEEecchhhhcC-ccccccccccccccccChhhcccCcCEEEEEeCcH
Confidence 57999998775 67888999999996 46899999876544332 11000 0 00000001134445789999999999
Q ss_pred hHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCcccccee
Q 002733 656 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 735 (887)
Q Consensus 656 TlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALN 735 (887)
|||+|+|.+...++||||||+|+||||+++++++++++|+++++|+ |.++.|+||+|.+.++|+.+ ...+|||
T Consensus 80 TlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~-----y~ie~r~~L~~~v~~~~~~~--~~~~ALN 152 (305)
T PRK02649 80 TVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQ-----YTIEERTMLTVSVMRGDQLR--WEALSLN 152 (305)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCC-----cEEEEeeeEEEEEEECCcce--eeeeeee
Confidence 9999999999899999999999999999999999999999999998 56899999999998777643 2357999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCC
Q 002733 736 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 815 (887)
Q Consensus 736 DVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s 815 (887)
|++|.|+..++|+++++++||+++++|+||||||||||||||||||||||||||++++|++||||||+|++||||+|+++
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~RplVlp~~~ 232 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSDSE 232 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEecCcCCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCcCCCCCC
Q 002733 816 RLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLDQKAL 887 (887)
Q Consensus 816 ~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r~~Qk~l 887 (887)
+|+|++... ..+.+++|||....+.+||.|.|++|++++++++..+ .+||++||+||+||++..||||
T Consensus 233 ~I~i~~~~~--~~~~l~~DG~~~~~l~~gd~i~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~wg~~~~~~~~ 300 (305)
T PRK02649 233 PVTVFPATP--ERLVMVVDGNAGCYVWPEDRVLIRRSPYPVRFIRLQD--PEFFRVLREKLGWGLPHIAKPT 300 (305)
T ss_pred EEEEEecCC--CcEEEEEecceeEecCCCCEEEEEECCCEEEEEEcCC--CCHHHHHHHHcCCCCCcccCCC
Confidence 999988642 4689999999999999999999999999999998875 4899999999999999999996
No 5
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=8.6e-67 Score=564.31 Aligned_cols=289 Identities=28% Similarity=0.538 Sum_probs=251.7
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhh---Hhhc-CCCCccceeeeccCcccccCCccEEEE
Q 002733 576 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFAR-IPGFGFVQTFYLQDTSDLHERVDFVAC 650 (887)
Q Consensus 576 ~~~p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~DlVIv 650 (887)
++++++|+|+.|+.. ++.+.+.+|.+||.+ +|++|++++.... .+.. ..+. ...+..++.+.+|+||+
T Consensus 2 ~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~D~vi~ 74 (296)
T PRK04539 2 NSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGC------HIVNKTELGQYCDLVAV 74 (296)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccc------cccchhhcCcCCCEEEE
Confidence 456789999999875 677889999999964 6899999764321 1100 0000 00112344557899999
Q ss_pred EcCCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCcc
Q 002733 651 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 730 (887)
Q Consensus 651 LGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~ 730 (887)
||||||||+|+|.+...++||+|||+|+||||+++++++++++|+++++|+ |.+++|++|++.+.++|+.+ ..
T Consensus 75 lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----~~~~~r~~l~~~v~~~~~~~--~~ 147 (296)
T PRK04539 75 LGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGK-----YLAEERILIEAALIREGKTA--ER 147 (296)
T ss_pred ECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCC-----ceEEEeeeEEEEEEECCeee--ee
Confidence 999999999999999889999999999999999999999999999999998 45899999999998887654 23
Q ss_pred ccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCee
Q 002733 731 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVI 810 (887)
Q Consensus 731 ~~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiV 810 (887)
++||||++|.|+..++|++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~rplV 227 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIA 227 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecCcCcccCCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCcC
Q 002733 811 LPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 882 (887)
Q Consensus 811 lp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r~ 882 (887)
+|++++|+|++.. ...+.+++|||....+.+||+|.|++|++++++++..+ .+||+.||+||+||.++
T Consensus 228 l~~~~~i~i~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~li~~~~--~~f~~~Lr~KL~w~~~~ 295 (296)
T PRK04539 228 IPDTSEIEILVTQ--GGDARVHFDGQTHIDVQNLDRITIRRYRNPLRILHPTD--YQYFKTLRQKLHWGEQL 295 (296)
T ss_pred ECCCCEEEEEEcC--CCcEEEEEcCCceeecCCCCEEEEEECCCceEEEEcCC--CcHHHHHHHHhcCCccc
Confidence 9999999999864 24689999999999999999999999999999998875 48999999999999875
No 6
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.2e-66 Score=558.98 Aligned_cols=278 Identities=26% Similarity=0.501 Sum_probs=248.2
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 002733 578 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 657 (887)
Q Consensus 578 ~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl 657 (887)
.+++|+|+.++.+++.+.+++|++||.+ ++++++++++.+..+. ...+ ...++.+.+|+||+|||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPGY---------GLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-cccc---------chhhcccCCCEEEEECCCHHH
Confidence 4688999999888788899999999964 6899999887655432 1111 113344578999999999999
Q ss_pred HHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeE
Q 002733 658 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 737 (887)
Q Consensus 658 L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDV 737 (887)
|+|+|.+...++||+|||+|+||||+++++++++++|+++++|+ |.+++|++|++.+.++++.. ..++||||+
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~-----y~ie~r~~L~~~v~~~~~~~--~~~~AlNev 150 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGE-----FEIEKPYMLSVFLEKKQGKI--LEKLAFNDV 150 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCC-----CeEEEEEEEEEEEEeCCceE--EEEEEeeee
Confidence 99999999889999999999999999999999999999999998 45899999999987766433 235799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEE
Q 002733 738 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 817 (887)
Q Consensus 738 vI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I 817 (887)
+|.|+..++|+++++|+||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|++++|
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Phsl~~rpiVl~~~~~I 230 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFEV 230 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEecccccccCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCC
Q 002733 818 ELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 879 (887)
Q Consensus 818 ~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg 879 (887)
+|++.. .+.+++||+....+++||+|.|++|+.++++++..+ .+||+.||+||+|+
T Consensus 231 ~i~~~~----~~~l~~DG~~~~~l~~~d~i~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~ 286 (287)
T PRK14077 231 EFKTKS----DCILCIDGQDRYKMNDFKSIKVGLSDKNVALIRHKN--RDYFQILKEKLHWG 286 (287)
T ss_pred EEEECC----CEEEEEcCCeeEecCCCCEEEEEECCCEEEEEECCC--CCHHHHHHHHhCCC
Confidence 998642 589999999999999999999999999999998765 58999999999997
No 7
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=9.9e-66 Score=555.09 Aligned_cols=288 Identities=25% Similarity=0.458 Sum_probs=245.0
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeecc-CcccccCCccEEEEEcCCchHH
Q 002733 581 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 658 (887)
Q Consensus 581 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~DlVIvLGGDGTlL 658 (887)
+|+|+.|+.. ++.+.+++|.+||.+ +|++|+++++.++.+.....+. ...... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFH--PSYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccc--cccccccchhhcccCCCEEEEECCcHHHH
Confidence 5899988764 677889999999964 6899999887654332100000 000000 1134445789999999999999
Q ss_pred HHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEE
Q 002733 659 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 738 (887)
Q Consensus 659 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVv 738 (887)
+|+|.+...++||||||+|+||||++++++++++.|+++++|+ |.++.|+||++++ +++... ..++|||||+
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~-----~~i~~r~~L~~~~--~~~~~~-~~~~alNdvv 150 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGD-----YTIEERSLLQLES--NPKLFG-ELNFALNEIA 150 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCC-----ceEEEEeeEEEEE--cCCcce-eeeEEEEEEE
Confidence 9999999889999999999999999999999999999999998 4589999999985 333221 1357999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEE
Q 002733 739 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 818 (887)
Q Consensus 739 I~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~ 818 (887)
|.|+..++|+.++++|||+++++|+||||||||||||||||||||||||||++++|++||||||++++||+|+|++++|+
T Consensus 151 i~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~RplVl~~~~~I~ 230 (292)
T PRK01911 151 ILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTEIT 230 (292)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEecccCccCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCcCC
Q 002733 819 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLD 883 (887)
Q Consensus 819 I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r~~ 883 (887)
|++.... ..+.+++|||. ..+.+||.|+|++|+.++++++..+ .+||+.||+||+||.+++
T Consensus 231 i~~~~~~-~~~~l~~DG~~-~~l~~gd~v~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~~~ 291 (292)
T PRK01911 231 LEVESRS-DNFLVSLDSRS-ETVDNGTELTIKKADFTIKLVELNN--HSFLKTLRNKLLWGEDKR 291 (292)
T ss_pred EEEecCC-CceEEEEeCCe-eecCCCCEEEEEECCCeEEEEEeCC--CcHHHHHHHHcCCCCcCC
Confidence 9986432 35789999998 5899999999999999999998765 489999999999998765
No 8
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2e-65 Score=555.51 Aligned_cols=293 Identities=28% Similarity=0.393 Sum_probs=252.2
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhc-CCCC--ccceeeeccCcccccCCccEEEEEc
Q 002733 577 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGF--GFVQTFYLQDTSDLHERVDFVACLG 652 (887)
Q Consensus 577 ~~p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~DlVIvLG 652 (887)
+++++|+|+.|++. ++.+.+++|++||.+ +|++|++++..+..+.. .+.. +.....+. ...++.+++|+||+||
T Consensus 3 ~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~vi~lG 80 (306)
T PRK03372 3 TASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD-ADPDAADGCELVLVLG 80 (306)
T ss_pred CCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc-chhhcccCCCEEEEEc
Confidence 46789999999875 677889999999964 68999998765443221 0000 00000000 0124445789999999
Q ss_pred CCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCcccc
Q 002733 653 GDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFD 732 (887)
Q Consensus 653 GDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ 732 (887)
||||||+|+|.+...++||||||+|+||||+++++++++++|+++++|+ |.+++|++|++++.++|+.+ ..++
T Consensus 81 GDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----y~i~~R~~L~~~v~~~g~~~--~~~~ 153 (306)
T PRK03372 81 GDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRD-----YRVEERMTLDVTVRVGGEIV--WRGW 153 (306)
T ss_pred CCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCC-----ceEEEeeeEEEEEEECCEEE--eeee
Confidence 9999999999999899999999999999999999999999999999998 55899999999998888764 2357
Q ss_pred ceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeC
Q 002733 733 VLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILP 812 (887)
Q Consensus 733 ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp 812 (887)
||||++|.|+..++|++++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|
T Consensus 154 ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Ph~l~~RplVv~ 233 (306)
T PRK03372 154 ALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVVS 233 (306)
T ss_pred EEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecccccCCCCCeEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCc
Q 002733 813 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 881 (887)
Q Consensus 813 ~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r 881 (887)
++++|+|++.... ..+.+++|||....+.+||+|.|++|++++++|+..+ .+||+.||+||+|..-
T Consensus 234 ~~~~I~i~~~~~~-~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~~~~~ 299 (306)
T PRK03372 234 PTSTVAVEILADT-SDAVLWCDGRRSVDLPPGARVEVRRGATPVRLARLDS--APFTDRLVRKFRLPVT 299 (306)
T ss_pred CCCEEEEEEecCC-CcEEEEEcCCeeEecCCCCEEEEEECCCeEEEEEeCC--CCHHHHHHHHcCCCCC
Confidence 9999999987533 4689999999999999999999999999999998875 4899999999999853
No 9
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.6e-65 Score=551.95 Aligned_cols=287 Identities=26% Similarity=0.466 Sum_probs=251.5
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 002733 577 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 577 ~~p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
...++|+|+.|++. ++.+.++++++||.+ +|++++++++.+..+. ... ....+..++.+++|+||+|||||
T Consensus 3 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~------~~~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 3 NHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKN------VKTGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccc------ccccchhhcCCCCCEEEEECCcH
Confidence 34689999999875 677889999999964 6899999887554321 010 00011134455789999999999
Q ss_pred hHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCcccccee
Q 002733 656 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 735 (887)
Q Consensus 656 TlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALN 735 (887)
|||+|+|.+...++||||||+|+||||+++++++++++|+++++|+ |.+++|++|++++.++++.. ..++|||
T Consensus 75 T~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~aLN 147 (292)
T PRK03378 75 NMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGH-----YISEKRFLLEAQVCRHGQQK--RISTAIN 147 (292)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCC-----ceEEEEEEEEEEEEeCCceE--EeEEEEE
Confidence 9999999998889999999999999999999999999999999998 45899999999998776643 2467999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCC
Q 002733 736 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 815 (887)
Q Consensus 736 DVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s 815 (887)
|++|.++..++++++++++||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||+|+|+++
T Consensus 148 dvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI~Phsl~~rplVl~~~~ 227 (292)
T PRK03378 148 EVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIDSSS 227 (292)
T ss_pred EEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEecccccCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCc
Q 002733 816 RLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 881 (887)
Q Consensus 816 ~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r 881 (887)
+|+|++... ...+.|++||+....+++||+|.|++|++++++|+..+ .+||++||+||+||+.
T Consensus 228 ~i~i~~~~~-~~~~~l~~DG~~~~~l~~gd~i~i~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~ 290 (292)
T PRK03378 228 TIRLKFSPN-RSDLEISCDSQIALPIQPGEEVLIRRSDYHLNLIHPKD--YSYFNTLRTKLGWSKK 290 (292)
T ss_pred EEEEEEccC-CCcEEEEECCceEEEcCCCcEEEEEECCCEEEEEEcCC--CCHHHHHHHHcCCCCC
Confidence 999998752 34689999999999999999999999999999998775 4899999999999954
No 10
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.7e-64 Score=538.84 Aligned_cols=269 Identities=27% Similarity=0.483 Sum_probs=235.8
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEe
Q 002733 596 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 675 (887)
Q Consensus 596 a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN 675 (887)
++++.+||.+ +|++++++++.+..+.. .. +...+..++.+.+|+||+||||||||+|+|.+...++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~~-~~------~~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLNL-PE------NHLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcCc-cc------cccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5789999964 68999998865543221 10 0001113445578999999999999999999988899999999
Q ss_pred CCCCccCCCCCcccHHHHHHHHHc-cCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEEEecCCCCeeEEEEEEE
Q 002733 676 LGSLGFLTSHPFEDYRQDLRQVIY-GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYE 754 (887)
Q Consensus 676 ~G~LGFLt~~~~ee~~~~L~~ll~-G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI~rg~~~~~~~i~v~i 754 (887)
+|+||||++++++++.+.|+++++ |+ |.+++|+||++++.++|+.+ ..++||||++|.++..++|++++++|
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLERGE-----FFVEERFLLEAKIERNGKII--ATSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHhcCC-----ceEEEeeeEEEEEEECCeEe--eeeEEEEEEEEecCCCCceEEEEEEE
Confidence 999999999999999999999998 87 55899999999988777654 23579999999999999999999999
Q ss_pred CCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEEEEEcCCCCCcEEEEec
Q 002733 755 HDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFD 834 (887)
Q Consensus 755 dg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~I~v~~~~r~~~~vsiD 834 (887)
||+++++|+||||||||||||||||||||||||+|++++|++||||||+|++||||+|++++|+|++.......+.+++|
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~Phsl~~RpiVl~~~~~I~i~~~~~~~~~~~l~~D 226 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAEYNTPQLEVSCD 226 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEeccccccCCCCEEECCCCEEEEEEcCCCCccEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986533345889999
Q ss_pred CcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCc
Q 002733 835 GKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 881 (887)
Q Consensus 835 G~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r 881 (887)
|+....+.+||+|+|++|++++++++..+ .+||+.||+||+|+..
T Consensus 227 G~~~~~l~~~d~v~I~~s~~~~~lv~~~~--~~f~~~Lr~KL~w~~~ 271 (272)
T PRK02231 227 SQIALPFTPDDRVHVQKSPDKLRLLHLKN--YNYYNVLSSKLGWLKK 271 (272)
T ss_pred CCeEEEeCCCcEEEEEEcCCEEEEEEcCC--CCHHHHHHHHhCCCCC
Confidence 99999999999999999999999998865 4899999999999954
No 11
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.3e-63 Score=539.60 Aligned_cols=287 Identities=28% Similarity=0.527 Sum_probs=250.4
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl 657 (887)
.++|+|+.+++. .+.+.++++.+||.+ +++++++++...+.+... .. . .....++.+.+|+||++||||||
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~-~~----~--~~~~~~~~~~~d~vi~~GGDGt~ 75 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGH-GL----Q--TVSRKLLGEVCDLVIVVGGDGSL 75 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-cc----c--ccchhhcccCCCEEEEEeCcHHH
Confidence 568999999875 667889999999964 689999987654332110 00 0 01112344578999999999999
Q ss_pred HHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeE
Q 002733 658 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 737 (887)
Q Consensus 658 L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDV 737 (887)
|+++|.+...++||+|||+|+||||+++++++++++|+++++|+ |.++.|+||++++.++|+.+ ..++||||+
T Consensus 76 l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~ALNev 148 (295)
T PRK01231 76 LGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGH-----YQEEERFLLEAEVRRGGEVI--GQGDALNDV 148 (295)
T ss_pred HHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCC-----ceEEEEEEEEEEEEECCcEE--eeeeEEEEE
Confidence 99999998889999999999999999999999999999999998 45899999999998777654 235799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEE
Q 002733 738 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 817 (887)
Q Consensus 738 vI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I 817 (887)
+|.++..+++++++++|||+++++|+||||||||||||||||||||||||||++++|++||||||+|++||||+|++++|
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ph~l~~rpiVl~~~~~I 228 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCCCccCCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCcC
Q 002733 818 ELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 882 (887)
Q Consensus 818 ~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r~ 882 (887)
+|++....+..+.+++||+..+.+.+||+|.|++|+.++++++..+ .+||++||+||+|+.+.
T Consensus 229 ~i~~~~~~~~~~~l~~DG~~~~~l~~g~~i~i~~s~~~~~l~~~~~--~~f~~~l~~KL~w~~~~ 291 (295)
T PRK01231 229 KIVISKDNRTYPRVSCDGQNSVTLAPGDTVTIRKKPQKLRLIHPLD--YNYYETCRTKLGWGSRL 291 (295)
T ss_pred EEEEccCCCCceEEEeCCCceEecCCCCEEEEEECCCeEEEEEcCC--CCHHHHHHHhcCCCCCc
Confidence 9998654444688999999999999999999999999999998765 48999999999999875
No 12
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=2.4e-63 Score=536.78 Aligned_cols=287 Identities=30% Similarity=0.535 Sum_probs=250.4
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCC
Q 002733 576 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 654 (887)
Q Consensus 576 ~~~p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGD 654 (887)
++.+++|+|+.|++. ++.+.+.++++||.+ .+++++++......... ..+ ...+..++.+.+|+||++|||
T Consensus 2 ~~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~-~~~------~~~~~~~~~~~~d~vi~~GGD 73 (291)
T PRK02155 2 KSQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGL-TGY------PALTPEEIGARADLAVVLGGD 73 (291)
T ss_pred CCcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-ccc------cccChhHhccCCCEEEEECCc
Confidence 344688999999775 677889999999964 68999998765432211 000 001123444578999999999
Q ss_pred chHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccce
Q 002733 655 GVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 734 (887)
Q Consensus 655 GTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~AL 734 (887)
||||+|+|.+...++|+||||+|+||||++++++++++.|+++++|+ |.+++|++|++++.++|+.+ ..++||
T Consensus 74 Gt~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~~Al 146 (291)
T PRK02155 74 GTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGN-----YEEEERMLLEARVVRDGEPI--FHALAF 146 (291)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCC-----ceEEEeEEEEEEEEECCeEE--Eeeeee
Confidence 99999999998889999999999999999999999999999999998 45899999999988777654 235799
Q ss_pred eeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCC
Q 002733 735 NEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDS 814 (887)
Q Consensus 735 NDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~ 814 (887)
||++|.|+..+++++++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||+|+|++
T Consensus 147 Nev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~p~~l~~rpiVl~~~ 226 (291)
T PRK02155 147 NDVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDD 226 (291)
T ss_pred eheeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecCcCccCCCCEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCc
Q 002733 815 ARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 881 (887)
Q Consensus 815 s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r 881 (887)
+.|+|++.. .+ .+.+++||+....+++||+|.|++|+.+++++...+ .+||++|++||+||..
T Consensus 227 ~~i~i~~~~-~~-~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~~~~~~--~~f~~~l~~Kl~w~~~ 289 (291)
T PRK02155 227 SEVAIQIVG-GR-DVSVNFDMQSLTSLELGDRIEVRRSPHTVRFLHPVG--YSYYATLRKKLHWNEG 289 (291)
T ss_pred CEEEEEEcC-CC-cEEEEEcCCcceeCCCCCEEEEEECCCeEEEEecCC--CCHHHHHHHhcCCCCC
Confidence 999999875 33 689999999999999999999999999999998775 4899999999999953
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.5e-61 Score=512.71 Aligned_cols=264 Identities=28% Similarity=0.492 Sum_probs=232.1
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 581 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 581 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
+|+|+.++.. ++.+.++++++|| + .+++++++.+.++.+.. .. .+..+. ++|+||+||||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~~-~~---------~~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALGM-DG---------LDIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcCc-cc---------Cccccc--CCCEEEEEcCcHHHHH
Confidence 4889888764 6788899999999 4 48999988765543210 00 011222 6899999999999999
Q ss_pred HHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEEE
Q 002733 660 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 739 (887)
Q Consensus 660 Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI 739 (887)
|+|.+. +||+|||+|+||||+++++++++++|+++++|+ |.++.|++|++.+ +|+. .++||||++|
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----~~i~~r~~L~~~v--~g~~----~~~aLNdvvv 133 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGE-----YFIDERMKLKVYI--NGER----LEDCTNEAVI 133 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCC-----cEEEEeeEEEEEE--CCcE----eEEEEEEEEE
Confidence 999874 599999999999999999999999999999998 4589999999987 5553 2469999999
Q ss_pred ecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEEE
Q 002733 740 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLEL 819 (887)
Q Consensus 740 ~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~I 819 (887)
.|+..++|++++++|||+++.+|+||||||||||||||||||||||||+|++++|++||||||+++.||+|+|++++|+|
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~rplVl~~~~~I~i 213 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEI 213 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecccCCCCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcC
Q 002733 820 KIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 877 (887)
Q Consensus 820 ~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~ 877 (887)
++.. ...+.+++||+....+.+||+|+|++|++++++++..+ +||++||+||.
T Consensus 214 ~~~~--~~~~~l~~DG~~~~~l~~~d~i~i~~s~~~~~~v~~~~---~f~~~Lr~KL~ 266 (271)
T PRK01185 214 KIAG--DQSSLLILDGQYEYKISKGDTVEISKSENYARFISFRE---SPYDRIREKLI 266 (271)
T ss_pred EEcC--CCCEEEEECCCceEecCCCCEEEEEECCCeeEEEEcCC---CHHHHHHHHHh
Confidence 9864 34688999999999999999999999999999998752 89999999984
No 14
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.6e-60 Score=518.01 Aligned_cols=289 Identities=29% Similarity=0.453 Sum_probs=244.1
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl 657 (887)
.++|+||.+++. ...+.+.++.+||. +.|++|.++....+... .. .+ .......+|+||++||||||
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~-~~g~~v~v~~~~~~~~~-~~------~~----~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLE-ARGCKVLMGPSGPKDNP-YP------VF----LASASELIDLAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHH-HCCCEEEEecCchhhcc-cc------ch----hhccccCcCEEEEECCcHHH
Confidence 478999999875 56778899999995 46899888775433111 00 00 12234468999999999999
Q ss_pred HHHHHhccCCCCcEEEEeC-CCCccCCCCC--cccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCee---cCCccc
Q 002733 658 LHASNLFRGAVPPVISFNL-GSLGFLTSHP--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKA---MPGKVF 731 (887)
Q Consensus 658 L~Aar~~~~~~~PVLGIN~-G~LGFLt~~~--~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~---~~~~~~ 731 (887)
|++++.+...++||+|||+ |+||||+++. .++ ++.|+++++|+ |.++.|++|+|++.++|+. .....+
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~-----~~i~~r~~L~~~~~~~~~~~~~~~~~~~ 144 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDR-----YAIERRMMLQARVFEGDRSNEEPVSESY 144 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCC-----ceEEEeeEEEEEEEeCCcccccccccce
Confidence 9999999888999999999 8999999875 444 78999999998 4589999999998776531 001246
Q ss_pred cceeeEEEecCCCCeeE--EEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCe
Q 002733 732 DVLNEVVVDRGSNPYLS--KIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 809 (887)
Q Consensus 732 ~ALNDVvI~rg~~~~~~--~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPi 809 (887)
+||||++|.++..++++ .++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||++++|||
T Consensus 145 ~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~l~~rpl 224 (305)
T PRK02645 145 YALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPI 224 (305)
T ss_pred EEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCcccccCCCE
Confidence 79999999998877775 4999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCcCCCCC
Q 002733 810 ILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLDQKA 886 (887)
Q Consensus 810 Vlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r~~Qk~ 886 (887)
|+|++++|+|++.......+.+++||+....+++|++|.|++|+.+++++...+ ..+||+.|++||+|+.+..||.
T Consensus 225 Vlp~~~~i~i~~~~~~~~~~~l~~DG~~~~~l~~~~~i~i~~s~~~~~~v~~~~-~~~f~~~L~~Kl~w~~~~~~~~ 300 (305)
T PRK02645 225 VIPPGSRVVIWPLGDYDLNIKLWKDGVLATSIWPGQRCVIQKARHPAKFIILEE-SYSYYRTLREKLHWAGSLIHYN 300 (305)
T ss_pred EECCCCEEEEEEcCCCCCcEEEEECCCcceecCCCCEEEEEECCCceEEEEeCC-CCCHHHHHHHHcCCCCcccccc
Confidence 999999999997653334578999999999999999999999999999998654 2489999999999999988873
No 15
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.3e-60 Score=550.64 Aligned_cols=285 Identities=27% Similarity=0.485 Sum_probs=249.3
Q ss_pred hccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEE
Q 002733 573 LMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 651 (887)
Q Consensus 573 l~w~~~p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvL 651 (887)
-.|..+|++|+|+.|++. ++.+.+++|++||.+ .+++|+++++....+... . .... ....+. .++|+||+|
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~--~--~~~~--~~~~~~-~~~dlvi~l 355 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNR--L--NEEC--NLIDDI-EEISHIISI 355 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhccc--c--cccc--cccccc-cCCCEEEEE
Confidence 478999999999999775 678889999999964 689999987655433210 0 0000 001122 368999999
Q ss_pred cCCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccc
Q 002733 652 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF 731 (887)
Q Consensus 652 GGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~ 731 (887)
|||||||+|+|.+...++||||||+|+||||++++++++++.|+++++|+ |.+++|+||++++.++++.. ..+
T Consensus 356 GGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~-----~~i~~r~~L~~~v~~~~~~~--~~~ 428 (569)
T PRK14076 356 GGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGE-----YEIEKRTKLSGFILKDGHQN--ILP 428 (569)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCC-----ceEEEeEEEEEEEEECCcce--eee
Confidence 99999999999999899999999999999999999999999999999998 55899999999998776543 246
Q ss_pred cceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeee
Q 002733 732 DVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVIL 811 (887)
Q Consensus 732 ~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVl 811 (887)
+||||++|.|+..++|++++|||||+++++|+||||||||||||||||||||||||+|++++|++||||||++++||||+
T Consensus 429 ~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tPI~ph~l~~rplV~ 508 (569)
T PRK14076 429 SALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRPLVV 508 (569)
T ss_pred EEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEeeccCCCCCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCC
Q 002733 812 PDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 879 (887)
Q Consensus 812 p~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg 879 (887)
|++++|+|++.. ..+.+++||+....|.+||+|.|++|++++++|+.. +||++||+||+-|
T Consensus 509 ~~~~~i~i~~~~---~~~~l~~DG~~~~~l~~gd~I~I~~s~~~~~~v~~~----~f~~~Lr~Kl~~~ 569 (569)
T PRK14076 509 SANSEIKIKLLK---KSALVVIDGSIEFEAKKGDEIIFRKSDSYAYFVKGD----NFYNKLKKLSLMG 569 (569)
T ss_pred CCCCEEEEEEeC---CcEEEEECCceeeecCCCCEEEEEECCceEEEEecc----hHHHHHHHHhCCC
Confidence 999999999863 468899999999999999999999999999999742 7999999999864
No 16
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-59 Score=504.60 Aligned_cols=280 Identities=33% Similarity=0.570 Sum_probs=248.5
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 658 (887)
++|+|+.++.. ++...++++..|+. ..+..+.+++...+.+... .. + .+...+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~~~--~~----~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLK-FKGVTVEVDQELAEELKDF--AD----Y----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHH-hcCceEEEechhhhhcccc--cc----c----ccccccCceEEEEeCCcHHHH
Confidence 47899999886 56788899999996 4688899888877765421 00 0 111236789999999999999
Q ss_pred HHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEE
Q 002733 659 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 738 (887)
Q Consensus 659 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVv 738 (887)
+++|.+...++||+|||+|+|||||+++++++++.+.++++|+ |.+++|++|++.+.+.+ . ..++||||++
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~-----~~~~~r~~l~~~v~~~~--~--~~~~aLNEv~ 140 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGE-----YRIEERLLLEVSVNRGD--I--RRALALNEVV 140 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCc-----eEEEEeEEEEEEEEeCC--c--cccceeeEEE
Confidence 9999999999999999999999999999999999999999976 55799999999987665 2 3578999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEE
Q 002733 739 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 818 (887)
Q Consensus 739 I~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~ 818 (887)
|.++..++|+.+++|+||+++++++||||||||||||||||+|||||||||++++|+|||||||++++||+|+|.+++|+
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p~~l~~Rpiv~p~~~~v~ 220 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVR 220 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecCCCcccCCCEEECCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCC
Q 002733 819 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNE 880 (887)
Q Consensus 819 I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~ 880 (887)
+++....+..+++++||+....+.++++|.|+++++++++++.... .+||++|++||+|+.
T Consensus 221 i~~~~~~~~~~~~~~Dg~~~~~~~~~~~i~i~~s~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 281 (281)
T COG0061 221 IEVLLTPKRDAVVVVDGQELLLINPGDRIEIRRSPYKARFIRLRSY-DDFFERLRSKLIWGV 281 (281)
T ss_pred EEEccCCCcceEEEEcCCceEecCCCCEEEEEECCCceeEEecCCc-ccHHHHHHHHhcCCC
Confidence 9988655556799999999999999999999999999999986653 389999999999984
No 17
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.2e-59 Score=501.21 Aligned_cols=254 Identities=23% Similarity=0.401 Sum_probs=226.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
++|+|+.+..+++.+.++++.+||.+ .|+++.++ . +++|+||+||||||||+
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~--------------------------~-~~~D~vi~lGGDGT~L~ 54 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH--------------------------P-KNANIIVSIGGDGTFLQ 54 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC--------------------------C-CCccEEEEECCcHHHHH
Confidence 47999988887888899999999964 56665521 0 24799999999999999
Q ss_pred HHHhccCC-CCcEEEEeC-CCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeE
Q 002733 660 ASNLFRGA-VPPVISFNL-GSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 737 (887)
Q Consensus 660 Aar~~~~~-~~PVLGIN~-G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDV 737 (887)
|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+ |.+++|++|++.+ +|+. .++||||+
T Consensus 55 a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~-----~~~~~r~~l~~~v--~~~~----~~~alNev 123 (264)
T PRK03501 55 AVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEE-----IEVRKYPTIEVTV--DGST----SFYCLNEF 123 (264)
T ss_pred HHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCC-----cEEEEeeeEEEEE--CCcc----ceEEEEEE
Confidence 99998765 789999999 9999999999999999999999998 4589999999987 4442 25799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCC-C----CCeeeC
Q 002733 738 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLS-F----RPVILP 812 (887)
Q Consensus 738 vI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs-~----RPiVlp 812 (887)
+| ++..++++.++|+|||+++++|+||||||||||||||||||||||||+|++++|++||||||+++ + ||+|+|
T Consensus 124 vi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~rpiVl~ 202 (264)
T PRK03501 124 SI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLGSPFILS 202 (264)
T ss_pred EE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCCCCEEEC
Confidence 99 77778899999999999999999999999999999999999999999999999999999999987 5 999999
Q ss_pred CCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhc
Q 002733 813 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCL 876 (887)
Q Consensus 813 ~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL 876 (887)
++++|+|++.......+.+++||+. .++++||+|.|++|++++++++..+ .+||+.||+||
T Consensus 203 ~~~~I~i~~~~~~~~~~~l~~DG~~-~~l~~~d~i~I~~s~~~~~lv~~~~--~~f~~~Lr~Kf 263 (264)
T PRK03501 203 HERKLTLKIVQDGNDYPIIGMDNEA-LSIKHVEKIDIRLSDKQIKTVKLKD--NSFWEKVKRTF 263 (264)
T ss_pred CCCEEEEEEecCCCCcEEEEEeCCE-EEcCCCCEEEEEECCCEEEEEEeCC--CCHHHHHHHhh
Confidence 9999999987533345789999998 8999999999999999999999875 48999999997
No 18
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.6e-59 Score=502.33 Aligned_cols=273 Identities=29% Similarity=0.494 Sum_probs=236.8
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchHH
Q 002733 581 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 658 (887)
Q Consensus 581 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTlL 658 (887)
+|+|+.+++. +..+.+.+|++||.+ .+++|.++++.......... ....+. ..++|+||++|||||||
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 5889888775 678889999999964 68999987654322110000 000111 13689999999999999
Q ss_pred HHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEE
Q 002733 659 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 738 (887)
Q Consensus 659 ~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVv 738 (887)
+|+| +...++||+|||+|++|||++++++++.++|+++++|+ |.++.|++|++.+ +|+. .++||||++
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~-----~~~~~r~~l~~~~--~~~~----~~~alNdv~ 139 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGD-----YFIDERIKLRVYI--NGEN----VPDALNEVV 139 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCC-----ceEEEeEEEEEEE--CCeE----eEEEeeeEE
Confidence 9999 66778999999999999999999999999999999998 4589999999987 5543 257999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEE
Q 002733 739 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 818 (887)
Q Consensus 739 I~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~ 818 (887)
|.++..+++++++|+|||+++++|+||||||||||||||||+|||||||||++++|++||||||+++.||+|+|++++|+
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~p~~l~~rplV~~~~~~i~ 219 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRID 219 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecccccCCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCC
Q 002733 819 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 879 (887)
Q Consensus 819 I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg 879 (887)
|++.... ..+.+++||+....+++|++|.|++|++.+++++.. .+||+.||+||+|.
T Consensus 220 l~~~~~~-~~~~l~~DG~~~~~l~~~~~v~i~~s~~~~~~~~~~---~~f~~~lr~KL~~~ 276 (277)
T PRK03708 220 VKLLRTG-REIILVIDGQYYEELPPDTEITIKKSPRKTKFVRFS---KEIYPKYTMKIKER 276 (277)
T ss_pred EEEecCC-CcEEEEECCCeeEecCCCCEEEEEECCCeEEEEecC---CcHHHHHHHHhhhc
Confidence 9986433 368899999999999999999999999999999875 38999999999994
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.8e-58 Score=488.27 Aligned_cols=251 Identities=21% Similarity=0.309 Sum_probs=221.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHH
Q 002733 581 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 660 (887)
Q Consensus 581 ~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~A 660 (887)
+|+|+.+.++++.+.++++.+||.+ .|+++ + .+++|+||+||||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 4889988767888899999999964 45441 0 1257999999999999999
Q ss_pred HHhccC--CCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEE
Q 002733 661 SNLFRG--AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 738 (887)
Q Consensus 661 ar~~~~--~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVv 738 (887)
+|.+.. .++||+|||+|+||||++++++++++.|+++++|+ |.+++|++|++++.++++.. ..++||||++
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~-----y~i~~r~~L~~~v~~~~~~~--~~~~alNev~ 124 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDP-----GQVVSYPLLEVKITYEDGEK--EKYLALNEAT 124 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCC-----ceEEEEeeEEEEEEeCCCcE--eeeeeeeeee
Confidence 999987 68999999999999999999999999999999998 45899999999987655432 1357999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCC-------Ceee
Q 002733 739 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFR-------PVIL 811 (887)
Q Consensus 739 I~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~R-------PiVl 811 (887)
|.++. ++++++++|||+++++|+||||||||||||||||||||||||+|++++|++|||||+ +.| |+|+
T Consensus 125 i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l--~~r~~~~~~~plVl 200 (265)
T PRK04885 125 IKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASI--NNRVFRTLGSPLIL 200 (265)
T ss_pred eccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeeccc--cccccccCCCCEEE
Confidence 99875 699999999999999999999999999999999999999999999999999999974 444 9999
Q ss_pred CCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcC
Q 002733 812 PDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 877 (887)
Q Consensus 812 p~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~ 877 (887)
|++++|+|++.. ...+.+++||+. ..+++||+|.|++|++++++++..+ .+||+.||+||-
T Consensus 201 ~~~~~I~i~~~~--~~~~~l~~DG~~-~~l~~~d~i~i~~s~~~~~li~~~~--~~f~~~Lr~Kf~ 261 (265)
T PRK04885 201 PKHHTITLKPVN--DDDYQITVDHLT-IKHKNVKSIEYRVANEKIRFARFRH--FPFWKRVKDSFI 261 (265)
T ss_pred CCCCEEEEEEcC--CCcEEEEECCCE-eecCCCCEEEEEECCceEEEEEcCC--CCHHHHHHHHhc
Confidence 999999999864 246889999999 9999999999999999999999875 489999999974
No 20
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.7e-56 Score=475.75 Aligned_cols=254 Identities=25% Similarity=0.369 Sum_probs=223.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHH
Q 002733 581 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 660 (887)
Q Consensus 581 ~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~A 660 (887)
+++|++|+. ..+.+.++.+||.+ .|+.+.++.+.. ....++|+||++|||||||+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 467776665 55778899999964 577777654421 112467999999999999999
Q ss_pred HHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEEEe
Q 002733 661 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 740 (887)
Q Consensus 661 ar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI~ 740 (887)
+|.+ ++||+|||+|+||||++++++++++.|+++++|+ |.++.|++|++++. ++ .++||||++|.
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~-----~~~~~r~~l~~~~~-~~------~~~alNev~i~ 122 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWN-----FREEKRWFLKIESE-LG------NHLALNDVTLE 122 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCC-----cEEEEeeEEEEEEc-CC------cEEEEEEEEEe
Confidence 9998 7999999999999999999999999999999998 55789999999873 22 24799999999
Q ss_pred cCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCCCCeeeCCCCEEEEE
Q 002733 741 RGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK 820 (887)
Q Consensus 741 rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPiVlp~~s~I~I~ 820 (887)
++..++++++++++||+.+.+|+||||||||||||||||+|||||||+|+++++++||||||+++.||+|+|++++|+|+
T Consensus 123 ~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI~Ph~L~~rpiVlp~~~~I~I~ 202 (256)
T PRK14075 123 RDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTVE 202 (256)
T ss_pred cCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeeeehhhcCCCceEcCCCCEEEEE
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEeCCCCCCchHHHHHhhcCCCCcC
Q 002733 821 IPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 882 (887)
Q Consensus 821 v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~~~~~~~d~f~~Lr~KL~Wg~r~ 882 (887)
+.. .+.+.+||+. +..++.|+|+.++..++++...+ .+||+.||+||+||.|+
T Consensus 203 ~~~----~~~l~iDGe~---~~~~~~I~I~~s~~~l~li~~~~--~~f~~~l~~kl~w~~~~ 255 (256)
T PRK14075 203 SQR----DINLIVDGVL---VGKTNRITVKKSRRYVRILRPKD--YDFVTVIKEKLGYGRRI 255 (256)
T ss_pred ECC----ceEEEECCCC---cCCCcEEEEEECCCEEEEEEcCC--CCHHHHHHHHhcCCcCC
Confidence 742 4789999986 56888999999999999998764 58999999999999875
No 21
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=4.7e-56 Score=471.84 Aligned_cols=245 Identities=21% Similarity=0.303 Sum_probs=213.4
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHH
Q 002733 581 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 660 (887)
Q Consensus 581 ~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~A 660 (887)
++.|+.++.+++.+.+++|.+++.. .++ ..+.+|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~-~~~-------------------------------~~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKK-KLA-------------------------------VEDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhh-CCC-------------------------------ccCCCCEEEEECCcHHHHHH
Confidence 5789999999998988888888742 111 01347999999999999999
Q ss_pred HHhccCCCCcEEEEeCCCCccCCCCCcccHHH-HHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccceeeEEE
Q 002733 661 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ-DLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 739 (887)
Q Consensus 661 ar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~-~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI 739 (887)
+|.+...++||+|||+|+||||++++++++++ .++++.+ + .+++|++|++.+ +|+ .++||||++|
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~-----~~~~r~~L~~~~--~~~-----~~~AlNE~vi 115 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--L-----KFTQIDLLEVQI--DDQ-----IHLVLNELAV 115 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--C-----CeEEEEEEEEEE--CCC-----eeEEEEEEEE
Confidence 99999899999999999999999999999998 6666644 2 257899999887 333 2479999999
Q ss_pred ecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCC-----CCCCCeeeCCC
Q 002733 740 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHS-----LSFRPVILPDS 814 (887)
Q Consensus 740 ~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhs-----Ls~RPiVlp~~ 814 (887)
.++. +++++++|||+++++|+||||||||||||||||||||||||+|++++|++||||||+ +..||+|+|++
T Consensus 116 ~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~Ph~~~~~~~~~rplVl~~~ 192 (259)
T PRK00561 116 YTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQSPIILPID 192 (259)
T ss_pred ccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeCCCCcccccccCCCeEECCC
Confidence 9765 679999999999999999999999999999999999999999999999999999998 45799999999
Q ss_pred CEEEEEEcCCC--CCcEEEEecCcccccCCCCCEEEEEEeCceee-EEeCCCCCCchHHHHHhhc
Q 002733 815 ARLELKIPDDA--RSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIP-TVNKSDQTGDWFHSLVRCL 876 (887)
Q Consensus 815 s~I~I~v~~~~--r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~-lV~~~~~~~d~f~~Lr~KL 876 (887)
++|+|++.... +..+.+++||+....+.+||+|.|++++.+++ +++..+ .+||+.||+||
T Consensus 193 ~~I~i~~~~~~~~~~~~~l~~DG~~~~~l~~~d~v~i~~s~~~~~~~v~~~~--~~f~~~Lr~Kf 255 (259)
T PRK00561 193 TKVEFEIKKAFDHDQFPRFYADGAKLRLGNSDTTIEISLVRSQAMFVASLKT--RDFIQKLKSTF 255 (259)
T ss_pred CEEEEEEccCCCCCCcEEEEEcCCeeecCCCCCEEEEEEcCccceEEEECCC--CCHHHHHHHHh
Confidence 99999986421 23578999999999999999999999999999 688765 58999999998
No 22
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=1.5e-54 Score=466.62 Aligned_cols=270 Identities=36% Similarity=0.615 Sum_probs=227.6
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCC--Cccce---------eeeccCcccccCCccEE
Q 002733 581 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPG--FGFVQ---------TFYLQDTSDLHERVDFV 648 (887)
Q Consensus 581 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~~~DlV 648 (887)
+|+||.|+.. ++.+.++++++||.+..++.++++..+.+.+..... ..... ...........+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 6899999985 788999999999976558999998887654321100 00000 01111222336789999
Q ss_pred EEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCe--ec
Q 002733 649 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK--AM 726 (887)
Q Consensus 649 IvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~--~~ 726 (887)
|++|||||+|+++|.+...++||+|||+|++|||++++++++.+.|+++++|+ |.+++|++|++.+.+.+. ..
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~-----~~~~~r~~l~~~~~~~~~~~~~ 155 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGE-----YSIEERMRLEVSVDRKKGAEIA 155 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTH-----CEEEEEEEEEEEEEETTE-CEE
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCC-----eEEEEeeeEEEEEecCCcccee
Confidence 99999999999999999889999999999999999999999999999999987 568999999999987765 22
Q ss_pred CCccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCCCCC
Q 002733 727 PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSF 806 (887)
Q Consensus 727 ~~~~~~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~ 806 (887)
..+.||||++|.++..++++++++++|++++++++|||||||||||||||++||||||++|.+++|++||||||+++.
T Consensus 156 --~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tpi~p~~~~~ 233 (285)
T PF01513_consen 156 --LIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTPICPHSLSN 233 (285)
T ss_dssp --EEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEEESESSTT-
T ss_pred --eeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEeccccccCC
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCceeeEEe
Q 002733 807 RPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVN 860 (887)
Q Consensus 807 RPiVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~l~lV~ 860 (887)
||+|+|++++|+|++. +..+++++||+....+.+||+|+|++|++++++|+
T Consensus 234 rpiVl~~~~~i~i~~~---~~~~~~~~DG~~~~~~~~~d~i~i~~s~~~~~~ir 284 (285)
T PF01513_consen 234 RPIVLPDDSEIEIKVE---RREAVLAIDGQREIELKPGDEIRIRKSPKPVKLIR 284 (285)
T ss_dssp S-EEEETTSEEEEEEE---SCEEEEEETTTEEEEECTTEEEEEEEECCEEEEEE
T ss_pred ceEEECCCCEEEEEEe---CCCEEEEEECCceEEeCCCcEEEEEEcCCccEEEe
Confidence 9999999999999987 45689999999999999999999999999999985
No 23
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=2.3e-51 Score=433.14 Aligned_cols=213 Identities=23% Similarity=0.319 Sum_probs=182.7
Q ss_pred CccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCCC-CCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeC
Q 002733 644 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRN 722 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~-~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~ 722 (887)
++|+||+||||||||+|+|.+...++||+|||+|+||||++ ++++++.+.|+++..+. ++.|++ .+. ..+
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~-------~~~l~~-~~~-~~~ 95 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV-------LHPLRM-TAT-DVS 95 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc-------EEEEEE-EEE-ECC
Confidence 57999999999999999999988899999999999999996 89999999999887653 233433 333 223
Q ss_pred CeecCCccccceeeEEEecCCCCeeEEEEEEECCEE-eEEEeeceeeecCCCChhHhhhccCCCccCCCCCcceeeecCC
Q 002733 723 GKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL-ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICP 801 (887)
Q Consensus 723 G~~~~~~~~~ALNDVvI~rg~~~~~~~i~v~idg~~-l~~~rgDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcP 801 (887)
|+. ..++||||++|.|+. ++++.++++|||++ +++|+||||||||||||||||||||||||+|++++|++|||||
T Consensus 96 ~~~---~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P 171 (246)
T PRK04761 96 GEV---HEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISP 171 (246)
T ss_pred CcE---eeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeecc
Confidence 442 235799999999987 67999999999996 9999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCeeeCCCCEEEEEEcCCCCCcEEEEecCcccccCCCCCEEEEEEeCce-eeEEeCCCCCCchHHHHHh
Q 002733 802 HSLS-FRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHP-IPTVNKSDQTGDWFHSLVR 874 (887)
Q Consensus 802 hsLs-~RPiVlp~~s~I~I~v~~~~r~~~~vsiDG~~~~~L~~Gd~V~I~~S~~~-l~lV~~~~~~~d~f~~Lr~ 874 (887)
|++. +||+|+|+++.|+|++....+..+.+++||+.. ..+++|.|++|+.. ++++...+ .+||++|-+
T Consensus 172 ~~~~~~RplVlp~~~~I~i~~~~~~~~~~~l~~DG~~~---~~~~~v~I~~s~~~~~~l~~~~~--~~~~~~~~~ 241 (246)
T PRK04761 172 FRPRRWRGALLPNSATVRFDVLEPDKRPVSAVADNTEV---RDVVEVTIREDKDITVTLLFDPG--HSLEERILA 241 (246)
T ss_pred cCCcCCccEEECCCCEEEEEEecCCCCcEEEEEcCCCc---ccCcEEEEEEcCCccEEEEECCC--CCHHHHHHH
Confidence 9986 999999999999999864333468899999875 34899999999987 88888765 589988754
No 24
>PLN02929 NADH kinase
Probab=100.00 E-value=8.1e-50 Score=430.99 Aligned_cols=234 Identities=24% Similarity=0.367 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHHHHHhccCCCCcEE
Q 002733 593 MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVI 672 (887)
Q Consensus 593 ~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVL 672 (887)
...+..+.+||. +.|+++...... +..+...++|+||+||||||||+|+|.+ ..++|||
T Consensus 33 ~~~~~~~~~~L~-~~gi~~~~v~r~-------------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~iPvl 91 (301)
T PLN02929 33 KDTVNFCKDILQ-QKSVDWECVLRN-------------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSIPVL 91 (301)
T ss_pred HHHHHHHHHHHH-HcCCEEEEeecc-------------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCCcEE
Confidence 345678888986 467776422110 0012235689999999999999999999 7889999
Q ss_pred EEeCC------------------CCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEEEEEEEeCCeecCCccccce
Q 002733 673 SFNLG------------------SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 734 (887)
Q Consensus 673 GIN~G------------------~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~~~V~~~G~~~~~~~~~AL 734 (887)
|||+| ++|||++++++++++.|+++++|+ |.++.|+||++.+ +|+.. ..+||
T Consensus 92 GIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~-----~~~~~r~~L~~~v--~g~~~---~~~AL 161 (301)
T PLN02929 92 GVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGR-----LKPTELSRISTVV--NGTLL---ETPAL 161 (301)
T ss_pred EEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCC-----ceEEEeeeEEEEe--cCCcc---cceEe
Confidence 99999 799999999999999999999998 4579999999987 55543 23799
Q ss_pred eeEEEecCCCCeeEEEEEEEC-----CEEeEEEeeceeeecCCCChhHhhhccCC---CccCCCCCcceeeecCCCCCCC
Q 002733 735 NEVVVDRGSNPYLSKIECYEH-----DRLITKVQGDGVIVATPTGSTAYSTAAGG---SMVHPNVPCMLFTPICPHSLSF 806 (887)
Q Consensus 735 NDVvI~rg~~~~~~~i~v~id-----g~~l~~~rgDGvIVSTPTGSTAYslSAGG---PIV~P~v~~ivlTPIcPhsLs~ 806 (887)
||++|.++..+++++++++|| |+++.+++|||||||||||||||+||||| ||++|++++|++||||||+ +.
T Consensus 162 NEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltPI~Ph~-~~ 240 (301)
T PLN02929 162 NDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGH-PP 240 (301)
T ss_pred eEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEeeCCCC-CC
Confidence 999999999999999999999 88999999999999999999999999999 9999999999999999999 99
Q ss_pred CCe---eeCCCCEEEEEEcCCCCCcEEEEecC-cccccCCCCCEEEEEEeCceeeEEeC
Q 002733 807 RPV---ILPDSARLELKIPDDARSNAWVSFDG-KRRQQLSRGDSVRIFMSEHPIPTVNK 861 (887)
Q Consensus 807 RPi---Vlp~~s~I~I~v~~~~r~~~~vsiDG-~~~~~L~~Gd~V~I~~S~~~l~lV~~ 861 (887)
||+ |++++++|+|++.. ..+.+++|| +..+.++.||+|+|+++..+++++..
T Consensus 241 r~l~~~vv~~~~~i~i~~~~---~~~~i~iDG~~~~~~l~~gd~i~I~~s~~~l~l~~~ 296 (301)
T PLN02929 241 KSLMHGFYKPGQHMQVRWNS---RKGTIYIDGSHVMHSIKLGDTIEISSDAPPLKVFLS 296 (301)
T ss_pred CCccccEECCCCeEEEEEeC---CCEEEEECCCcceEecCCCCEEEEEECCCeEEEEEe
Confidence 999 99999999998843 358899999 56678999999999999999999975
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.88 E-value=1.6e-22 Score=201.22 Aligned_cols=132 Identities=24% Similarity=0.315 Sum_probs=83.5
Q ss_pred hccccCCCCCCCCCCCccccccccceEecCCCcccccCCCcceEEEcC---CCCHhhHHHHHHcCCcEEEEcCCCcccCc
Q 002733 115 NVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGG---QVTEEGLKWLMEKGYKTIVDIRAERVKDN 191 (887)
Q Consensus 115 n~~~d~g~p~~~gyp~~t~~~Nf~~V~~s~~~~~~~~~~~e~~LYRSg---qpt~edLa~L~elGIKTVIDLR~e~~Ee~ 191 (887)
|+++.+|||..+|. ...|+ .||||+ .++++|++.|.++||+||||||++. |..
T Consensus 1 N~RDlGg~~~~~g~-----~ir~g------------------~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~-E~~ 56 (164)
T PF13350_consen 1 NFRDLGGYPTADGR-----RIRPG------------------RLYRSGNLSNLTEADLERLRELGIRTIIDLRSPT-ERE 56 (164)
T ss_dssp S-EEGGGTST---------TS-TT------------------SEEEES--TT--HHHHHHHHHTT--EEEE-S-HH-HHH
T ss_pred CccccCCCCcccee-----eecCC------------------cEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcc-ccc
Confidence 78899999965544 33444 555666 4589999999999999999999986 221
Q ss_pred chhhhhHHhhhcCCcEEEEEecCCCCCCC-----------------------------HHHHHHHHHHHhcCCCCcEEEe
Q 002733 192 FYEAAIDDAILSGKVELIKIPVEVRTAPT-----------------------------MEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 192 ~~~~~e~~~~~~~GI~yihIPV~d~~~ps-----------------------------~e~v~~flelI~d~~~~PVLVH 242 (887)
.. ......|++++|+|+....... .+.+.+++++|.+.. +|+|||
T Consensus 57 ~~-----p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~H 130 (164)
T PF13350_consen 57 RA-----PDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFH 130 (164)
T ss_dssp HH-----S----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE
T ss_pred cC-----CCCCcCCceeeeecccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEE
Confidence 11 1123459999999997543321 234567778776555 799999
Q ss_pred CccCCChHHHHHHHHHHHcCCCHHHHHHHhcccc
Q 002733 243 SKEGVWRTYAMVSRWRQYMARCASQISGQTITSN 276 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lGv~~eeIi~DYllsn 276 (887)
|++||||||+++|+++.++||+.++|++||++||
T Consensus 131 C~aGKDRTG~~~alll~~lGV~~~~I~~DY~lSn 164 (164)
T PF13350_consen 131 CTAGKDRTGVVAALLLSLLGVPDEDIIADYLLSN 164 (164)
T ss_dssp -SSSSSHHHHHHHHHHHHTT--HHHHHHHHHGGG
T ss_pred CCCCCccHHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 9999999999999999999999999999999997
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.84 E-value=6.7e-21 Score=191.18 Aligned_cols=122 Identities=23% Similarity=0.272 Sum_probs=89.1
Q ss_pred cccccceEecCCCcccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEec
Q 002733 134 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 213 (887)
Q Consensus 134 ~~Nf~~V~~s~~~~~~~~~~~e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV 213 (887)
+.||+.|. +.|||||+|++.++++|+++|+||||+||+++ .. .....+++..||+++|+|+
T Consensus 4 P~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~--~~---~~~~~f~~~~~I~l~~~~~ 64 (164)
T PF03162_consen 4 PLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEP--PS---QDFLEFAEENGIKLIHIPM 64 (164)
T ss_dssp -TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE---
T ss_pred CccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCC--CC---HHHHHHHhhcCceEEEecc
Confidence 67999997 48999999999999999999999999999875 11 2344578999999999999
Q ss_pred CCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhcc
Q 002733 214 EVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 274 (887)
Q Consensus 214 ~d~~~----ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~DYll 274 (887)
..... ++.+.+.++++++.+..++||||||..|+||||+++||+|.++||+...|++.|-.
T Consensus 65 ~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 65 SSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp ----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred ccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 86544 56889999999887888999999999999999999999999999999999999973
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.82 E-value=1.5e-19 Score=175.61 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=96.2
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 233 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~--~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d 233 (887)
+.+|||+||+++|++.|+++|||+|||||++. |....+ ..+++++...|++|+|+|+.. ..++.+++..|.+++.
T Consensus 7 ~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~-E~~~~p~~~~~~~~a~~~gl~y~~iPv~~-~~~~~~~v~~f~~~~~- 83 (135)
T TIGR01244 7 EHLYVSPQLTKADAAQAAQLGFKTVINNRPDR-EEESQPDFAQIKAAAEAAGVTYHHQPVTA-GDITPDDVETFRAAIG- 83 (135)
T ss_pred CCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHCCCeEEEeecCC-CCCCHHHHHHHHHHHH-
Confidence 47999999999999999999999999999986 322222 123456677899999999985 4578999999999994
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHh
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 272 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~DY 272 (887)
..++|||+||++|+ |||++|++++.+.|++.++|++.-
T Consensus 84 ~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 66899999999999 999999999999999999998753
No 28
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.75 E-value=3.9e-18 Score=182.75 Aligned_cols=136 Identities=29% Similarity=0.332 Sum_probs=111.2
Q ss_pred cCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC---CCCccCCC--CCcccHHHHHHHHHccCCCCCceeeEEeeEEE
Q 002733 642 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL---GSLGFLTS--HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 716 (887)
Q Consensus 642 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~---G~LGFLt~--~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL~ 716 (887)
...+|+||++|||||||.|++.+.+..+||+|||. |+=|.|+- .-++....+|.++..|++.| ..|.|++
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~w-----v~r~rir 177 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEW-----VLRQRIR 177 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHH-----hhhheeE
Confidence 56799999999999999999988888899999997 67777763 23377888999999999764 4577777
Q ss_pred EEEEeC-CeecC---------------------------------CccccceeeEEEecCCCCeeEEEEEEECCEEeEEE
Q 002733 717 CEIFRN-GKAMP---------------------------------GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV 762 (887)
Q Consensus 717 ~~V~~~-G~~~~---------------------------------~~~~~ALNDVvI~rg~~~~~~~i~v~idg~~l~~~ 762 (887)
.++.-+ |-..+ .-.+.|||||+|...-++++++|++.||+....++
T Consensus 178 ~tv~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~Kq 257 (395)
T KOG4180|consen 178 GTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQ 257 (395)
T ss_pred EEEecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccc
Confidence 777531 21000 01245899999999999999999999999998899
Q ss_pred eeceeeecCCCChhHhhhcc
Q 002733 763 QGDGVIVATPTGSTAYSTAA 782 (887)
Q Consensus 763 rgDGvIVSTPTGSTAYslSA 782 (887)
++.|++|||.||||+|+++.
T Consensus 258 Kssgl~vctgTGstsw~~~i 277 (395)
T KOG4180|consen 258 KSSGLVVCTGTGSTSWTFNI 277 (395)
T ss_pred cCCCeeEecCCCcceEeecc
Confidence 99999999999999999764
No 29
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.74 E-value=6.4e-18 Score=159.48 Aligned_cols=100 Identities=28% Similarity=0.383 Sum_probs=73.8
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcc--hhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 233 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~--~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d 233 (887)
+.||.||||+++|++.|+++|||||||||++. |++. ....+++.++..|+.|+|+||. ...++.+++.+|.+++.
T Consensus 7 ~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~- 83 (110)
T PF04273_consen 7 DDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-EEPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALE- 83 (110)
T ss_dssp TTEEEECS--HHHHHHHHHCT--EEEE-S-TT-STTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHH-
T ss_pred CCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHH-
Confidence 58999999999999999999999999999986 3322 1235678899999999999999 46789999999999994
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
..++|||+||++|. |++++|+|...
T Consensus 84 ~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 67899999999999 99999999864
No 30
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.65 E-value=1.1e-15 Score=144.59 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=99.2
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCc--ccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAER--VKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 233 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~--~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d 233 (887)
..++.||||+++|++.++++|||+|||.|++. +.+|.. +.++.+++..|+.|.|+||. ...++.++++.|.+.+ +
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~-~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al-~ 84 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGF-AAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL-D 84 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCCh-HHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-H
Confidence 47999999999999999999999999999996 223433 46788899999999999999 5678999999999999 5
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHH
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 270 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~ 270 (887)
...+|||.||++|. |+-++|++-+..-|++.+++.+
T Consensus 85 eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 85 EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 88999999999999 9999999999778899999865
No 31
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.57 E-value=1.7e-15 Score=161.41 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=125.2
Q ss_pred cceEEEcCCCCHhhHH--HHHHcCCcEEEEcCCCc-ccCcchhhhhH-HhhhcCCcEEEEEecCCCCCCCHHHHHHHHHH
Q 002733 155 EVTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAID-DAILSGKVELIKIPVEVRTAPTMEQVEKFASL 230 (887)
Q Consensus 155 e~~LYRSgqpt~edLa--~L~elGIKTVIDLR~e~-~Ee~~~~~~e~-~~~~~~GI~yihIPV~d~~~ps~e~v~~flel 230 (887)
....|||++|.+.+.. ++..++++++++|+.+. .....+. .+. .+....++.....+.........+.+.+++++
T Consensus 52 ~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l 130 (249)
T COG2365 52 PIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQL 130 (249)
T ss_pred ceeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHH
Confidence 4589999999887776 77888999999999722 0111111 111 11234455555555555566678889999988
Q ss_pred HhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhcccccccccchhhhhcc-----------c---------
Q 002733 231 VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKL-----------K--------- 290 (887)
Q Consensus 231 I~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~DYllsn~~~~~~~~~~~~~-----------~--------- 290 (887)
+.+..++|||+||++||||||+++||++.++|++.+++++||+.+|.+......+.... +
T Consensus 131 ~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (249)
T COG2365 131 LADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKKLQTFSLTLA 210 (249)
T ss_pred HhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchhcccchhHHHHH
Confidence 86665699999999999999999999999999999999999999999988766643222 1
Q ss_pred ----cccchhhhhhhcchhhhhhhhhccccccccccc
Q 002733 291 ----ASAGKFLLEEKYETVKENQDEIQTKNGVFGFGL 323 (887)
Q Consensus 291 ----m~~~~~~l~~~~g~~e~~~~~~~~~~~~~~~~~ 323 (887)
..+-...++++||+.++|+.+..+++....+.+
T Consensus 211 ~~~y~~~a~~~~~~~~gs~~~~l~~~~~~~~~~~~~~ 247 (249)
T COG2365 211 SDEYLFAAFDELDEQYGSLDGYLADKFGLSADEWEPL 247 (249)
T ss_pred hHHHHHHHHHHHHHHHccccccchhhcCcCHHHHHhh
Confidence 233445678999999999999988877665543
No 32
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.52 E-value=5.5e-14 Score=146.58 Aligned_cols=124 Identities=22% Similarity=0.273 Sum_probs=107.3
Q ss_pred cccccccceEecCCCcccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEE
Q 002733 132 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKI 211 (887)
Q Consensus 132 t~~~Nf~~V~~s~~~~~~~~~~~e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihI 211 (887)
-.+.||+.|. ..|||||.|.+..+.+|+.+++|+||.|+++. |+.....+++..+|+++|+
T Consensus 55 ipPlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~i 115 (249)
T KOG1572|consen 55 IPPLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQI 115 (249)
T ss_pred cCCccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEEE
Confidence 3477999997 38999999999999999999999999999975 3334456899999999999
Q ss_pred ecCCCC----CC----CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhcc
Q 002733 212 PVEVRT----AP----TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 274 (887)
Q Consensus 212 PV~d~~----~p----s~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~DYll 274 (887)
.|.... .| ..+.+...++++.+..++|+|+||..||+|||++++|+|.+++|+..-|+++|+.
T Consensus 116 ~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 116 GIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLR 186 (249)
T ss_pred ecccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHH
Confidence 998554 22 2456777888777899999999999999999999999999999999999999984
No 33
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.47 E-value=3.5e-13 Score=129.64 Aligned_cols=107 Identities=11% Similarity=0.146 Sum_probs=83.2
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHh--
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVS-- 232 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~-~ps~e~v~~flelI~-- 232 (887)
+.||+|++++..++++|+++||++||||+.+. .. + ...+++|+|+|+.|.. .+..+.+.+..+++.
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~--~~-~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV--PN-L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC--CC-C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 47999999999999999999999999998865 11 1 2468999999999732 333444444444442
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHH-cCCCHHHHHHHhc
Q 002733 233 NSSKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTI 273 (887)
Q Consensus 233 d~~~~PVLVHC~aGKDRTG~lvALll~~-lGv~~eeIi~DYl 273 (887)
...++||||||.+|.+|||+++++|++. .|++.++|++..-
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~ 116 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVK 116 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2567899999999999999988887654 7899999987543
No 34
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.41 E-value=1.5e-12 Score=124.41 Aligned_cols=113 Identities=9% Similarity=0.159 Sum_probs=85.7
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 232 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps-~e~v~~flelI~-- 232 (887)
+.||+|+++...+++.|+++||++||||+.+. +. ......|++|+|+|+.+...+. ...+..+.+++.
T Consensus 7 ~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~-~~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 7 PGLYLGSYPAASDKELLKKLGITHVLNVAKEV-PN--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred CCeEECChhHhcCHHHHHHcCCCEEEEcccCC-CC--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999976 21 1234579999999998766443 334444444443
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHH-HcCCCHHHHHHHhccccc
Q 002733 233 NSSKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISGQTITSND 277 (887)
Q Consensus 233 d~~~~PVLVHC~aGKDRTG~lvALll~-~lGv~~eeIi~DYllsn~ 277 (887)
...++||||||.+|.+|||++++.++. ..+++.++|++..--..+
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~ 123 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP 123 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 135789999999999999998766654 578999999876543333
No 35
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.29 E-value=2e-11 Score=128.92 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=86.8
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002733 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 243 (887)
Q Consensus 166 ~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d--~~~~PVLVHC 243 (887)
+..++.|++.||++||.+.... |. .+.++..||+|+++|++|...|+.+++.+|++++.. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5677999999999999997643 21 233567899999999999999999999999998742 3577999999
Q ss_pred ccCCChHHHHHHHHHHHcCCCHHHHHHHhcccccc
Q 002733 244 KEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 278 (887)
Q Consensus 244 ~aGKDRTG~lvALll~~lGv~~eeIi~DYllsn~~ 278 (887)
.+|.+|||+++|+|+...|++.++|++---...+.
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 99999999999999888899999998765544443
No 36
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.26 E-value=5.1e-11 Score=120.15 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=86.6
Q ss_pred eEEEcCCCCH----hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002733 157 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 232 (887)
Q Consensus 157 ~LYRSgqpt~----edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~ 232 (887)
+|.--..|++ ++++.|++.||+.||++..+. +. .+.++..|+.|.++|+.+...|+.+.+.+|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 4444445554 677999999999999996543 11 12456789999999999888999988888887764
Q ss_pred c------CCCCcEEEeCccCCChHHHHHHHHHHHcC-CCHHHHHHHhcccc
Q 002733 233 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYMA-RCASQISGQTITSN 276 (887)
Q Consensus 233 d------~~~~PVLVHC~aGKDRTG~lvALll~~lG-v~~eeIi~DYllsn 276 (887)
. ..++||+|||.+|.+|||+++++|+...| ++.++|++-.-...
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R 139 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKR 139 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 2 24789999999999999999888886655 99999987654333
No 37
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.25 E-value=1.4e-11 Score=123.74 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=64.8
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEe
Q 002733 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLH 242 (887)
Q Consensus 166 ~edLa~L~elGIKTVIDLR~e~~Ee~~~~-~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d--~~~~PVLVH 242 (887)
+.|+++|++.|+..||.|-+.. |-..+. ....+.++..||.|+|+||.|...|+.+.+.++.+.+.. ..++.|++|
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-ELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6789999999999999998876 222111 234567888999999999999999987655444433321 347789999
Q ss_pred CccCCChHHHHHHHHHHHcC--CCHHHHH
Q 002733 243 SKEGVWRTYAMVSRWRQYMA--RCASQIS 269 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lG--v~~eeIi 269 (887)
|.+|.+|||+++|+++..+| +++++||
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999988767 7888875
No 38
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.20 E-value=1.9e-11 Score=116.57 Aligned_cols=106 Identities=15% Similarity=0.288 Sum_probs=81.9
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC-CCCCCHHHHHHHHHHHhc--C
Q 002733 158 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 234 (887)
Q Consensus 158 LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d-~~~ps~e~v~~flelI~d--~ 234 (887)
||.|+.+... .++|+++||++|||++.+. +.+ ......++.|+++|+.| ...+..+.+..+.++|.+ .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6889998888 9999999999999999875 211 12355789999999987 334444455555555532 4
Q ss_pred CCCcEEEeCccCCChHHHHHHHHHHH-cCCCHHHHHHHh
Q 002733 235 SKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQT 272 (887)
Q Consensus 235 ~~~PVLVHC~aGKDRTG~lvALll~~-lGv~~eeIi~DY 272 (887)
.+++|||||.+|.+|||+++++|+.. .|++.++|++-.
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v 110 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYV 110 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHH
Confidence 57899999999999999988887765 789999998744
No 39
>PRK12361 hypothetical protein; Provisional
Probab=99.12 E-value=4.6e-10 Score=132.01 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=91.6
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 233 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d-- 233 (887)
+.||.|+++++.|++.|++.||++||||+.+. +...+. ....+++|+++|+.|...|+.+++.+..++|.+
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~~------~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDWS------LTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-cccccc------ccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999654 111110 123589999999999888888888888887753
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHc--CCCHHHHHHHhccccc
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYM--ARCASQISGQTITSND 277 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~l--Gv~~eeIi~DYllsn~ 277 (887)
..+++|||||.+|.+|++++++.|+... +++.++|++.--...+
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 218 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRK 218 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCC
Confidence 3468999999999999999998888753 6899999765433333
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.81 E-value=1.4e-08 Score=104.99 Aligned_cols=94 Identities=17% Similarity=0.296 Sum_probs=78.1
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCC
Q 002733 169 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 247 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~-~~~PVLVHC~aGK 247 (887)
+..++...+++|+-|...- | +.+.....|+..+++|+.|...|+.+.+.+|++++... ..+.|.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----y---d~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----Y---DAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----C---ChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4556677999999996643 2 12345678999999999999999999999999998532 2489999999999
Q ss_pred ChHHHHHHHHHHH-cCCCHHHHHH
Q 002733 248 WRTYAMVSRWRQY-MARCASQISG 270 (887)
Q Consensus 248 DRTG~lvALll~~-lGv~~eeIi~ 270 (887)
+|||+|+|+|+++ .|++..|+++
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~ 182 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIA 182 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999886 7899999865
No 41
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.74 E-value=7.6e-07 Score=96.53 Aligned_cols=109 Identities=26% Similarity=0.279 Sum_probs=75.0
Q ss_pred CEEEEEecC--Ch-hHHHHHHHHHHHHhcCCCeEEEEcCChhh-HhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 002733 580 RTVLVLKKP--GP-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 580 ~~VlIv~K~--~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
++++||..| +. ...+.+.++.++|.+ .++++.+...... .... . . .......+|+||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~---------~-~--~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR---------Y-V--EEARKFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH---------H-H--HHHHhcCCCEEEEECCCC
Confidence 578888888 43 345667788888854 5666544222111 0000 0 0 011234579999999999
Q ss_pred hHHHHHHhccC-CCCcEEE-EeCCCCccCCC-CC-cccHHHHHHHHHccC
Q 002733 656 VILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 701 (887)
Q Consensus 656 TlL~Aar~~~~-~~~PVLG-IN~G~LGFLt~-~~-~ee~~~~L~~ll~G~ 701 (887)
|+..+++.+.. ...|.+| |+.|+.++|+. +. ++++.++++.+.+|+
T Consensus 69 Tl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~ 118 (293)
T TIGR00147 69 TINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGD 118 (293)
T ss_pred hHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999997765 4567788 89999999997 66 678889999888876
No 42
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.26 E-value=3.9e-06 Score=83.62 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=78.7
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC-CCCCHHHHHHHHHHHh--cCCCCcEEEeC
Q 002733 167 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVS--NSSKKPLYLHS 243 (887)
Q Consensus 167 edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~-~~ps~e~v~~flelI~--d~~~~PVLVHC 243 (887)
.+.+.++++|+.-||.+..+. |- ..+ -...+..||+++.+|..|. ..|+.+.+.+..++|. +..++-++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y-E~-~a~---s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY-EL-LAP---SNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch-hh-hhh---hHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 567889999999999998875 21 111 1245778999999999875 4688898888888775 24577899999
Q ss_pred ccCCChHHHHHHHHHH-HcCCCHHHHHH
Q 002733 244 KEGVWRTYAMVSRWRQ-YMARCASQISG 270 (887)
Q Consensus 244 ~aGKDRTG~lvALll~-~lGv~~eeIi~ 270 (887)
+||..|+.++++||+. .-+|++++|.+
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~ 144 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVE 144 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHH
Confidence 9999999999999976 46799999865
No 43
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.22 E-value=2.5e-06 Score=84.82 Aligned_cols=62 Identities=19% Similarity=0.350 Sum_probs=46.4
Q ss_pred hHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCCChHHHHHHHHH
Q 002733 197 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGVWRTYAMVSRWR 258 (887)
Q Consensus 197 e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~-~~~PVLVHC~aGKDRTG~lvALll 258 (887)
+...++..|+.|++||+.+...|.++.+++|++++... .+..++|||.+|++||.++.+++.
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~ 146 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYD 146 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45677889999999999999999999999999999743 245799999999999999555543
No 44
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.18 E-value=8.5e-06 Score=79.55 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=83.2
Q ss_pred eEEEcCCCCHhh----HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002733 157 TFCRGGQVTEEG----LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 232 (887)
Q Consensus 157 ~LYRSgqpt~ed----La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~ 232 (887)
+|...-.|+... ++.|++.|++|||-..... | ....++..||..+..|+.+...|....++.+++++.
T Consensus 18 rFLIThnPtnaTln~fieELkKygvttvVRVCe~T-----Y---dt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~ 89 (173)
T KOG2836|consen 18 RFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----Y---DTTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVK 89 (173)
T ss_pred EEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc-----c---CCchhhhcCceEeecccccCCCCchHHHHHHHHHHH
Confidence 344444565544 4678889999999998875 1 122357789999999999888888888888888764
Q ss_pred ----cCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHH
Q 002733 233 ----NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 270 (887)
Q Consensus 233 ----d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~ 270 (887)
+..+.-|.|||-+|-+|+.+++|+.+.-.|+..++|++
T Consensus 90 ~~f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave 131 (173)
T KOG2836|consen 90 TKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVE 131 (173)
T ss_pred HHHhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHH
Confidence 23445699999999999999999999989999999854
No 45
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.14 E-value=5.5e-06 Score=84.67 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=57.8
Q ss_pred hhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCccCCChHHHHHHHHHHHc-C-CCHHHHHHHhccc
Q 002733 201 ILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQYM-A-RCASQISGQTITS 275 (887)
Q Consensus 201 ~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d--~~~~PVLVHC~aGKDRTG~lvALll~~l-G-v~~eeIi~DYlls 275 (887)
.+..|+.++++|+.|...|+.+++.++.++|.+ ..++.|+|||.+|.+|||++++.|+++- | ...++++.-+...
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRR 146 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 456799999999999999999999888888753 3455999999999999999887665543 4 5555555544433
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.06 E-value=1.8e-05 Score=86.45 Aligned_cols=116 Identities=13% Similarity=0.204 Sum_probs=85.5
Q ss_pred cceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCH----HHHHHHHHH
Q 002733 155 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 230 (887)
Q Consensus 155 e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~----e~v~~flel 230 (887)
.+.+|-|.+..+.+...|+++||+.|+|+.... .... .....+++|.++|+.|....+. +....|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~--~~~~------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC--PNPR------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC--Cccc------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 468999999999999999999999999998864 1110 1223489999999987544332 334456665
Q ss_pred HhcCCCCcEEEeCccCCChHHHH-HHHHHHHcCCCHHHHHHHhccccccc
Q 002733 231 VSNSSKKPLYLHSKEGVWRTYAM-VSRWRQYMARCASQISGQTITSNDVL 279 (887)
Q Consensus 231 I~d~~~~PVLVHC~aGKDRTG~l-vALll~~lGv~~eeIi~DYllsn~~~ 279 (887)
.. ..++.|||||.+|..|+-++ +|.+..+.|++.++|++-.-..-+..
T Consensus 151 a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i 199 (285)
T KOG1716|consen 151 AR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPII 199 (285)
T ss_pred HH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 53 55789999999999999985 55556678999999977655444444
No 47
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.89 E-value=4.1e-05 Score=82.06 Aligned_cols=105 Identities=15% Similarity=0.237 Sum_probs=76.0
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHH-HHHHHHHHHhc-
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME-QVEKFASLVSN- 233 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e-~v~~flelI~d- 233 (887)
+.||-|+.-+...++-|+++||++|||..+.- ...+. ....+.|..||+.|...-... -+-+.+.+|.+
T Consensus 177 p~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~fe-------~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeA 247 (343)
T KOG1717|consen 177 PNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNNFE-------NNGEFIYKQIPISDHASQNLSQFFPEAISFIDEA 247 (343)
T ss_pred cchhcccccccccHHHHHhcCceEEEecCCCC--cchhh-------cCCceeEEeeeccchhhhhhhhhhHHHHHHHHHh
Confidence 57888888888999999999999999997764 22221 345689999999865433222 23445566643
Q ss_pred -CCCCcEEEeCccCCChHHHHHHHHH-HHcCCCHHHHH
Q 002733 234 -SSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQIS 269 (887)
Q Consensus 234 -~~~~PVLVHC~aGKDRTG~lvALll-~~lGv~~eeIi 269 (887)
..+-.|||||-+|.-|+-++.+.|+ +.+..+..+|.
T Consensus 248 rsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAy 285 (343)
T KOG1717|consen 248 RSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAY 285 (343)
T ss_pred hccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHH
Confidence 3456899999999999999765554 45778888774
No 48
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.77 E-value=3.8e-05 Score=69.11 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHHH
Q 002733 208 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 260 (887)
Q Consensus 208 yihIPV~d~~~ps~-e~v~~flelI~d~-----~~~PVLVHC~aGKDRTG~lvALll~~ 260 (887)
|.+.+.++...|.. +.+.+|++.+... .++||+|||.+|++|||+++++++.+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44445555555644 6777777766432 26799999999999999988887664
No 49
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.77 E-value=3.8e-05 Score=69.11 Aligned_cols=53 Identities=21% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCChHHHHHHHHHHH
Q 002733 208 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQY 260 (887)
Q Consensus 208 yihIPV~d~~~ps~-e~v~~flelI~d~-----~~~PVLVHC~aGKDRTG~lvALll~~ 260 (887)
|.+.+.++...|.. +.+.+|++.+... .++||+|||.+|++|||+++++++.+
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~ 63 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILL 63 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHH
Confidence 44445555555644 6777777766432 26799999999999999988887664
No 50
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.65 E-value=0.0003 Score=71.43 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=72.3
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 002733 156 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 232 (887)
Q Consensus 156 ~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps-~e~v~~flelI~-- 232 (887)
+.||-|.-...-+-..|++.||..|||-..+. ... ...+++|+.+|+.|..... .+.++...+.|.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCC-CCc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 47888866666677889999999999998865 122 2358999999998543221 223333333321
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHH-HHHcCCCHHHH
Q 002733 233 NSSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQI 268 (887)
Q Consensus 233 d~~~~PVLVHC~aGKDRTG~lvALl-l~~lGv~~eeI 268 (887)
....+..|+||.||..|+..++..| .++.+++..||
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreA 127 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREA 127 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHH
Confidence 2457899999999999999976555 56788998887
No 51
>PRK00861 putative lipid kinase; Reviewed
Probab=97.51 E-value=0.046 Score=60.01 Aligned_cols=107 Identities=13% Similarity=0.226 Sum_probs=65.4
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCChhh--HhhcCCCCccceeeeccCcccccCCccEEEEEcCC
Q 002733 580 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVHD--IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 654 (887)
Q Consensus 580 ~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~V~ve~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGD 654 (887)
++++||..|.. .....+.++...|.+...++++......+ .+. ..-..+..|+||++|||
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGD 67 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGGD 67 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECCh
Confidence 57777777653 22344667777775432344444322111 111 01113457999999999
Q ss_pred chHHHHHHhccCCCCcEEEEeCCCCccCC-CCC-cccHHHHHHHHHccC
Q 002733 655 GVILHASNLFRGAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 701 (887)
Q Consensus 655 GTlL~Aar~~~~~~~PVLGIN~G~LGFLt-~~~-~ee~~~~L~~ll~G~ 701 (887)
||+=.++..+....+|+-=|-.|+-.=++ .+. +.++.++++.+.+|.
T Consensus 68 GTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 116 (300)
T PRK00861 68 GTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGK 116 (300)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999999887777776556778633322 122 346788888888876
No 52
>PRK13057 putative lipid kinase; Reviewed
Probab=97.50 E-value=0.0029 Score=68.90 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=48.5
Q ss_pred cCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCCCC--CcccHHHHHHHHHccC
Q 002733 642 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSH--PFEDYRQDLRQVIYGN 701 (887)
Q Consensus 642 ~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~~--~~ee~~~~L~~ll~G~ 701 (887)
...+|.||++|||||+-.+++.+....+|+.-|.+|+-.-++.. -+.++.++++.+..|.
T Consensus 48 ~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~ 109 (287)
T PRK13057 48 ADGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQ 109 (287)
T ss_pred HcCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999988878889888899986666542 2457888898888776
No 53
>PRK12361 hypothetical protein; Provisional
Probab=97.16 E-value=0.042 Score=65.47 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=64.8
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCCh--hhHhhcCCCCccceeeeccCcccccCCccEEEEEcC
Q 002733 579 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 653 (887)
Q Consensus 579 p~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~V~ve~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGG 653 (887)
.++++||..|.. ...+.+.++.+.|.+...++++..+.. +..+.+ .-..++.|+||++||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la~---------------~~~~~~~d~Viv~GG 306 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALAK---------------QARKAGADIVIACGG 306 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHHH---------------HHHhcCCCEEEEECC
Confidence 356677766653 244567788888864322333332211 111110 011245799999999
Q ss_pred CchHHHHHHhccCCCCcEEEEeCCCCccCCC-C---C--cccHHHHHHHHHccC
Q 002733 654 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-H---P--FEDYRQDLRQVIYGN 701 (887)
Q Consensus 654 DGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~-~---~--~ee~~~~L~~ll~G~ 701 (887)
|||+=.++..+.+.++|+-=|-+|+--=|+- + . ..+..++++.+.+|.
T Consensus 307 DGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~ 360 (547)
T PRK12361 307 DGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGH 360 (547)
T ss_pred CcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCC
Confidence 9999999988877777755567776442221 1 1 146778888888776
No 54
>PRK13059 putative lipid kinase; Reviewed
Probab=97.08 E-value=0.06 Score=59.18 Aligned_cols=108 Identities=15% Similarity=0.222 Sum_probs=63.3
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE-cCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 002733 580 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 580 ~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~V~v-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
++++||..|.. ...+.+.++.++|.+ .+.++.+ ......... .......+.+|.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK-------------NAFKDIDESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH-------------HHHHHhhcCCCEEEEECCcc
Confidence 46777777653 234556778888854 4665443 111111000 00111234679999999999
Q ss_pred hHHHHHHhccC--CCCcEEEEeCCCCccCCC-CC-cccHHHHHHHHHccC
Q 002733 656 VILHASNLFRG--AVPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 701 (887)
Q Consensus 656 TlL~Aar~~~~--~~~PVLGIN~G~LGFLt~-~~-~ee~~~~L~~ll~G~ 701 (887)
|+=.+++-+.. ..+|+-=|-+|+---++- +. +.+..++++.++.|.
T Consensus 68 Tv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 117 (295)
T PRK13059 68 TVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSK 117 (295)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCC
Confidence 99888887753 345654457776333221 11 456788888888876
No 55
>PRK13337 putative lipid kinase; Reviewed
Probab=96.85 E-value=0.11 Score=57.29 Aligned_cols=106 Identities=16% Similarity=0.221 Sum_probs=60.6
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEE--EEcCChhh--HhhcCCCCccceeeeccCcccccCCccEEEEEc
Q 002733 580 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNI--LVEPDVHD--IFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 652 (887)
Q Consensus 580 ~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~V--~ve~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLG 652 (887)
++++||..|.. .....+.++...|.+ .++++ +..+...+ .+.+ .-..+..|+||++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a~---------------~~~~~~~d~vvv~G 65 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAAE---------------RAVERKFDLVIAAG 65 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHHH---------------HHHhcCCCEEEEEc
Confidence 57777777763 223456677777754 45553 32221111 1100 01123569999999
Q ss_pred CCchHHHHHHhccCC--CCcEEEEeCCCCccCCC-CC-cccHHHHHHHHHccC
Q 002733 653 GDGVILHASNLFRGA--VPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 701 (887)
Q Consensus 653 GDGTlL~Aar~~~~~--~~PVLGIN~G~LGFLt~-~~-~ee~~~~L~~ll~G~ 701 (887)
||||+=.++.-+... .+|+-=|-.|+---++- +. +.++.++++.+..|.
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~ 118 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGH 118 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 999998888865533 34544446775433331 11 346778888888776
No 56
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.83 E-value=0.0021 Score=67.38 Aligned_cols=55 Identities=18% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCCC-HHHHHHHHHHHhcC----CCCcEEEeCccCCChHHHHHHHHHHH------cCCCHHHHHHH
Q 002733 217 TAPT-MEQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQ 271 (887)
Q Consensus 217 ~~ps-~e~v~~flelI~d~----~~~PVLVHC~aGKDRTG~lvALll~~------lGv~~eeIi~D 271 (887)
..|. .+++.+|++.+... ..+||+|||.+|.+|||++++++..+ ..++..+++..
T Consensus 142 ~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 142 GVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred CccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3443 36777777776533 36899999999999999988876432 12666666544
No 57
>PRK13055 putative lipid kinase; Reviewed
Probab=96.63 E-value=0.45 Score=53.36 Aligned_cols=106 Identities=11% Similarity=0.180 Sum_probs=61.5
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeE--EEEcC-C--hhhHhhcCCCCccceeeeccCcccccCCccEEEEE
Q 002733 580 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMN--ILVEP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 651 (887)
Q Consensus 580 ~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~--V~ve~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvL 651 (887)
++++||..|.. ...+.+.++...|.+ .+++ ++... . -+..+.. .-....+|+||++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~vvv~ 66 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDLIIAA 66 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCEEEEE
Confidence 57788877763 234566778888854 4554 33322 1 1111110 0112357999999
Q ss_pred cCCchHHHHHHhccCC-CCcEEE-EeCCCCccCC-CCC-cc-cHHHHHHHHHccC
Q 002733 652 GGDGVILHASNLFRGA-VPPVIS-FNLGSLGFLT-SHP-FE-DYRQDLRQVIYGN 701 (887)
Q Consensus 652 GGDGTlL~Aar~~~~~-~~PVLG-IN~G~LGFLt-~~~-~e-e~~~~L~~ll~G~ 701 (887)
|||||+=.++.-+... ..|.|| |-+|+---++ .+. +. +..++++.+..|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~ 121 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQ 121 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCC
Confidence 9999998888876543 224455 5777533222 111 23 6778888888776
No 58
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.57 E-value=0.0053 Score=65.61 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=37.7
Q ss_pred CCC-CHHHHHHHHHHHhcC---CCCcEEEeCccCCChHHHHHHHHHHH------cCCCHHHHHHH
Q 002733 217 TAP-TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQ 271 (887)
Q Consensus 217 ~~p-s~e~v~~flelI~d~---~~~PVLVHC~aGKDRTG~lvALll~~------lGv~~eeIi~D 271 (887)
..| +.+.+.+|++.+... ..+||+|||.+|.+|||+++++...+ -.++..+++..
T Consensus 170 ~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~ 234 (258)
T smart00194 170 GVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKE 234 (258)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344 456777777776432 16799999999999999988776432 12566666544
No 59
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=96.31 E-value=0.45 Score=52.88 Aligned_cols=105 Identities=22% Similarity=0.315 Sum_probs=64.4
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE---cCC--hhhHhhcCCCCccceeeeccCcccccCCccEEEEE
Q 002733 580 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV---EPD--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 651 (887)
Q Consensus 580 ~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~V~v---e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvL 651 (887)
+++.+|..|.. .......++.+.|.+. +.++.+ +.. ..+... .-..+..|.||+.
T Consensus 3 ~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~~~t~~~g~a~~~a~----------------~a~~~~~D~via~ 65 (301)
T COG1597 3 KKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSVRVTEEAGDAIEIAR----------------EAAVEGYDTVIAA 65 (301)
T ss_pred ceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEEEEeecCccHHHHHH----------------HHHhcCCCEEEEe
Confidence 56666655542 3455677888888653 443332 111 111110 1112368999999
Q ss_pred cCCchHHHHHHhccCCCCcEEEE-eCCCCccCC---CCCcccHHHHHHHHHccC
Q 002733 652 GGDGVILHASNLFRGAVPPVISF-NLGSLGFLT---SHPFEDYRQDLRQVIYGN 701 (887)
Q Consensus 652 GGDGTlL~Aar~~~~~~~PVLGI-N~G~LGFLt---~~~~ee~~~~L~~ll~G~ 701 (887)
|||||+=.++.-+...+.|.||| -+|+--=++ .++.+++.++++.+.+|+
T Consensus 66 GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~ 119 (301)
T COG1597 66 GGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGE 119 (301)
T ss_pred cCcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 99999999998777766664665 567533332 244556889999998876
No 60
>PRK11914 diacylglycerol kinase; Reviewed
Probab=96.21 E-value=0.031 Score=61.43 Aligned_cols=109 Identities=24% Similarity=0.273 Sum_probs=68.6
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEE--EcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcC
Q 002733 579 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 653 (887)
Q Consensus 579 p~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~~~V~--ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGG 653 (887)
+++++||..|.. ...+.+.++.+.|.+ .++++. ......+.. . + ...-..+.+|+||++||
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~~~-~---------~---a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHDAR-H---------L---VAAALAKGTDALVVVGG 73 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHHHH-H---------H---HHHHHhcCCCEEEEECC
Confidence 478888877763 345667788888854 455543 322211110 0 0 00111345799999999
Q ss_pred CchHHHHHHhccCCCCcEEEEeCCCCccCCC-CC--cccHHHHHHHHHccC
Q 002733 654 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-HP--FEDYRQDLRQVIYGN 701 (887)
Q Consensus 654 DGTlL~Aar~~~~~~~PVLGIN~G~LGFLt~-~~--~ee~~~~L~~ll~G~ 701 (887)
|||+=.++..+...++|+-=|-.|+--=++- +. .++.+++++.+.+|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~ 124 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGW 124 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCC
Confidence 9999999988877777866667886444432 22 346778888888776
No 61
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.08 E-value=0.0045 Score=66.97 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhcC--CCCcEEEeCccCCChHHHHHHHH
Q 002733 216 RTAPTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 216 ~~~ps~e~v~~flelI~d~--~~~PVLVHC~aGKDRTG~lvALl 257 (887)
...|+...+.+++.-+.+. ..+|++|||.||.+|||+++|+-
T Consensus 196 ~~~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 196 FNVPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred cCCcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 3445455566666666444 46899999999999999977764
No 62
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.64 E-value=0.015 Score=64.48 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=19.5
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002733 236 KKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 236 ~~PVLVHC~aGKDRTG~lvALl 257 (887)
.+|++|||.+|.+|||+++++-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHH
Confidence 5799999999999999977663
No 63
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=95.55 E-value=0.033 Score=65.39 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHhcC-----------C-CCcEEEeCccCCChHHHHHHHHHHH-cC-CCHHHHHHHhcccccc-cccchh
Q 002733 220 TMEQVEKFASLVSNS-----------S-KKPLYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTITSNDV-LLKDST 284 (887)
Q Consensus 220 s~e~v~~flelI~d~-----------~-~~PVLVHC~aGKDRTG~lvALll~~-lG-v~~eeIi~DYllsn~~-~~~~~~ 284 (887)
+.+.+..|++.+... . ..| +|||.+|.+|||+++|++... .+ ++.++++.+.-.+... .-+..+
T Consensus 439 ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~e 517 (535)
T PRK15375 439 STDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDAS 517 (535)
T ss_pred ChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHH
Confidence 445677777665321 0 135 799999999999988887542 22 7888888877655443 444433
Q ss_pred h
Q 002733 285 R 285 (887)
Q Consensus 285 ~ 285 (887)
.
T Consensus 518 Q 518 (535)
T PRK15375 518 Q 518 (535)
T ss_pred H
Confidence 3
No 64
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=95.54 E-value=0.011 Score=68.57 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHH----HHHhcCCCCcEEEeCccCCChHH
Q 002733 176 GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFA----SLVSNSSKKPLYLHSKEGVWRTY 251 (887)
Q Consensus 176 GIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~fl----elI~d~~~~PVLVHC~aGKDRTG 251 (887)
|=-.|.||+.+. .|. . ....=+...+|+.+...|..+.+..|- .|+.+....-+.+||++|++|||
T Consensus 53 ~~y~vyNL~~er----~yd--~----~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg 122 (434)
T KOG2283|consen 53 DHYKVYNLSSER----LYD--P----SRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTG 122 (434)
T ss_pred CceEEEecCccc----cCC--c----cccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceE
Confidence 556799999743 111 0 111223445888988999988887664 45654555678999999999999
Q ss_pred HHHHHHHHHcC--CCHHHHHHHhccc
Q 002733 252 AMVSRWRQYMA--RCASQISGQTITS 275 (887)
Q Consensus 252 ~lvALll~~lG--v~~eeIi~DYlls 275 (887)
+|+..++.+.| ...++|++-|...
T Consensus 123 ~~icA~L~~~~~~~ta~eald~~~~k 148 (434)
T KOG2283|consen 123 VMICAYLIYSGISATAEEALDYFNEK 148 (434)
T ss_pred EEEeHHHHhhhhcCCHHHHHHHHhhh
Confidence 98877777777 5578888877755
No 65
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=95.54 E-value=0.021 Score=64.00 Aligned_cols=59 Identities=27% Similarity=0.389 Sum_probs=49.6
Q ss_pred CccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCCCccCC--CCCcccHHHHHHHHHccCCC
Q 002733 644 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPFEDYRQDLRQVIYGNNT 703 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~LGFLt--~~~~ee~~~~L~~ll~G~~~ 703 (887)
.+|+|+.+|||||.=-++.-. +.++|||||.+|.-=|.. .++|++....+..+++|++.
T Consensus 100 gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r 160 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNAR 160 (355)
T ss_pred CceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhccccc
Confidence 699999999999987777766 678999999999766553 56799998999999999644
No 66
>PRK13054 lipid kinase; Reviewed
Probab=95.43 E-value=0.04 Score=60.54 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=62.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE--cCCh--hhHhhcCCCCccceeeeccCcccccCCccEEEEEcCC
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV--EPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 654 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~v--e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGD 654 (887)
+++++||..++......+.++..+|.+ .++++.+ .+.. +..+.. ....+..|.||++|||
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a~---------------~~~~~~~d~vvv~GGD 66 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYVE---------------EALALGVATVIAGGGD 66 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHHH---------------HHHHcCCCEEEEECCc
Confidence 467777766665444556677777754 4555433 2211 111110 1112457999999999
Q ss_pred chHHHHHHhccCC----CCcEEEEeCCCCccCC-CCC-cccHHHHHHHHHccC
Q 002733 655 GVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 701 (887)
Q Consensus 655 GTlL~Aar~~~~~----~~PVLGIN~G~LGFLt-~~~-~ee~~~~L~~ll~G~ 701 (887)
||+=.+++-+.+. .+|+-=|-.|+--=++ .+. +.++.++++.+.+|.
T Consensus 67 GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~ 119 (300)
T PRK13054 67 GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGR 119 (300)
T ss_pred cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 9999988876532 3455445777532222 111 346778888888776
No 67
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.42 E-value=0.016 Score=64.21 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002733 236 KKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 236 ~~PVLVHC~aGKDRTG~lvALl 257 (887)
.+||+|||.+|.+|||+++++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999987764
No 68
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=95.34 E-value=0.0029 Score=54.70 Aligned_cols=37 Identities=16% Similarity=-0.029 Sum_probs=31.5
Q ss_pred ccccchhhhhhhcchhhhhhhhhcccccccccccccc
Q 002733 290 KASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVD 326 (887)
Q Consensus 290 ~m~~~~~~l~~~~g~~e~~~~~~~~~~~~~~~~~r~~ 326 (887)
.|.+++..|+++|||+++|+.+.+|+++++++.+|..
T Consensus 30 ~l~~~l~~i~~~yGs~e~Yl~~~lgl~~~~i~~Lr~~ 66 (68)
T PF13348_consen 30 YLEAALDAIDERYGSVENYLREELGLSEEDIERLRER 66 (68)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHT-T--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 6788999999999999999999999999999999864
No 69
>PRK01415 hypothetical protein; Validated
Probab=95.34 E-value=0.16 Score=55.16 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=88.7
Q ss_pred ccCCchHHhHHHHHHHHHHHHHhhhcccCccC------CcchhHHHHHHhhhhccccCCCCCCCCCCCccccccccceEe
Q 002733 69 DQLPPLAIFRSEMKRCCESMHIALENYLTPED------VRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYL 142 (887)
Q Consensus 69 ~~~pp~~~~r~~~~~~~~~l~~~l~~~~~~~~------~~~~~i~rkl~rl~n~~~d~g~p~~~gyp~~t~~~Nf~~V~~ 142 (887)
-.|+...-+|.+|+..|+.+.+.+.=|+.+.| +-.-.|..=++.|++.-.-.+..--..+++...|.....=+.
T Consensus 14 ~~i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~~~~~~~~k~s~~~~~~F~~l~vr~k 93 (247)
T PRK01415 14 VNIEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLTGPKDVNVKINYSDVHPFQKLKVRLK 93 (247)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCcCCCCceeecccccCCCCCccEEEee
Confidence 45666788999999999999888888888777 111112222333333110011111112233333443332221
Q ss_pred cCCCcccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcE-EEEEecCCCCCCCH
Q 002733 143 SNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTM 221 (887)
Q Consensus 143 s~~~~~~~~~~~e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~-yihIPV~d~~~ps~ 221 (887)
.-+-....+.. .+..-++..++++++..|.+..=-.|||.|.+. |- +...+. -+++|+.
T Consensus 94 ~eiV~~g~~~~-~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~-E~-----------~~Ghi~gAinip~~------- 153 (247)
T PRK01415 94 KEIVAMNVDDL-NVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDY-EV-----------EVGTFKSAINPNTK------- 153 (247)
T ss_pred ceEEecCCCCC-CccccCccccCHHHHHHHHhCCCcEEEECCCHH-HH-----------hcCCcCCCCCCChH-------
Confidence 11111111111 112224557899999888776556799999975 11 001111 1334432
Q ss_pred HHHHHHHHHH----hcCCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 222 EQVEKFASLV----SNSSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 222 e~v~~flelI----~d~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
.+.+|-+++ ....++||+++|++|. |+-.+++.++.
T Consensus 154 -~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~ 193 (247)
T PRK01415 154 -TFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKSTSLLKS 193 (247)
T ss_pred -HHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHHHHHHH
Confidence 233332221 1235789999999998 98888777655
No 70
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=95.09 E-value=0.024 Score=63.12 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 002733 237 KPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 237 ~PVLVHC~aGKDRTG~lvALl 257 (887)
+|++|||.+|.+|||+++|+-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaid 250 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVD 250 (312)
T ss_pred CCEEEEecCCCcchhHHHHHH
Confidence 699999999999999987774
No 71
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=94.76 E-value=0.035 Score=62.11 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=19.1
Q ss_pred CcEEEeCccCCChHHHHHHHH
Q 002733 237 KPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 237 ~PVLVHC~aGKDRTG~lvALl 257 (887)
+|++|||.+|.+|||+++|+-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid 268 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAID 268 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHH
Confidence 799999999999999987764
No 72
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=94.72 E-value=0.035 Score=69.20 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhc--CC-CCcEEEeCccCCChHHHHH
Q 002733 221 MEQVEKFASLVSN--SS-KKPLYLHSKEGVWRTYAMV 254 (887)
Q Consensus 221 ~e~v~~flelI~d--~~-~~PVLVHC~aGKDRTG~lv 254 (887)
..++..|++.+.. .. +-||++||.||.+|||+++
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehH
Confidence 4556666665532 22 5599999999999999943
No 73
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=94.55 E-value=0.037 Score=57.14 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 220 TMEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 220 s~e~v~~flelI~---d~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
+.+.+..|++.+. +....|++|||..|.+|||+++++...
T Consensus 151 ~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 151 SPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred ccchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 3455666666553 235689999999999999998887654
No 74
>PHA02738 hypothetical protein; Provisional
Probab=94.48 E-value=0.045 Score=61.19 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.2
Q ss_pred CCcEEEeCccCCChHHHHHHHH
Q 002733 236 KKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 236 ~~PVLVHC~aGKDRTG~lvALl 257 (887)
.+||+|||.+|.+|||+++|+-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 4699999999999999977664
No 75
>PLN02727 NAD kinase
Probab=94.46 E-value=0.044 Score=68.11 Aligned_cols=81 Identities=11% Similarity=-0.084 Sum_probs=69.5
Q ss_pred ccccCCC-CCcccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCccCccccCCCccccccccccccccccc
Q 002733 412 SEIVSSG-PVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLD 490 (887)
Q Consensus 412 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (887)
+++.+.+ +.+++++.++|||++++++.+++.|++...+.+++||+++++|++..+.... ++.++.+ +++|++
T Consensus 533 ~kn~s~d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~-----s~s~res--~s~Ng~ 605 (986)
T PLN02727 533 EKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVA-----SVSVRES--QRSNGK 605 (986)
T ss_pred ccccCccccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCccccc-----ccccccc--cccCCc
Confidence 6667777 8899999999999999999999999999999999999999999998888776 3444444 788888
Q ss_pred ccccccccc
Q 002733 491 EQVISSSVR 499 (887)
Q Consensus 491 ~~~~~~~~~ 499 (887)
.++.+++-.
T Consensus 606 a~vgssd~~ 614 (986)
T PLN02727 606 ASLGSSDDE 614 (986)
T ss_pred cccccccCc
Confidence 888887755
No 76
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=94.25 E-value=0.082 Score=50.91 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=27.6
Q ss_pred ccEEEEEcCCchHHHHHHhccCCCC----cEEEEeCCCC
Q 002733 645 VDFVACLGGDGVILHASNLFRGAVP----PVISFNLGSL 679 (887)
Q Consensus 645 ~DlVIvLGGDGTlL~Aar~~~~~~~----PVLGIN~G~L 679 (887)
.|.||++|||||+=.++..+..... |+.=|.+|+-
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT~ 93 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGTG 93 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SSS
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCCh
Confidence 5999999999999999998877654 6666688863
No 77
>PLN02160 thiosulfate sulfurtransferase
Probab=94.24 E-value=0.18 Score=49.53 Aligned_cols=87 Identities=16% Similarity=0.302 Sum_probs=51.1
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC----CCCCHHHHHHHHHHHhcCCCCc
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKP 238 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~----~~ps~e~v~~flelI~d~~~~P 238 (887)
.++++++..+.+.+ ..|||.|+.. + +. .-...|...+++|.... ...+.+.+..+.+.+ ..+.|
T Consensus 16 ~i~~~e~~~~~~~~-~~lIDVR~~~-E---~~-----~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~ 83 (136)
T PLN02160 16 SVDVSQAKTLLQSG-HQYLDVRTQD-E---FR-----RGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADD 83 (136)
T ss_pred EeCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----cCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCc
Confidence 35778887776667 4799999986 1 10 01122333567776321 111223333333333 34679
Q ss_pred EEEeCccCCChHHHHHHHHHHHcCC
Q 002733 239 LYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 239 VLVHC~aGKDRTG~lvALll~~lGv 263 (887)
|++||.+|. |+..++..+.. .|.
T Consensus 84 IivyC~sG~-RS~~Aa~~L~~-~G~ 106 (136)
T PLN02160 84 ILVGCQSGA-RSLKATTELVA-AGY 106 (136)
T ss_pred EEEECCCcH-HHHHHHHHHHH-cCC
Confidence 999999998 99988766644 353
No 78
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=93.74 E-value=0.25 Score=54.25 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=39.1
Q ss_pred CCccEEEEEcCCchHHHHHHhccCC----CCcEEEEeCCCCccCC-CCC-cccHHHHHHHHHccC
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 701 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~----~~PVLGIN~G~LGFLt-~~~-~ee~~~~L~~ll~G~ 701 (887)
+..|+||++|||||+=.++.-+... .+|+-=|-+|+--=++ .+. +.+..++++.++.|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~ 115 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGA 115 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 4569999999999988888766432 2344445777533222 222 456778888888776
No 79
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=93.31 E-value=0.26 Score=44.90 Aligned_cols=85 Identities=14% Similarity=0.030 Sum_probs=45.8
Q ss_pred CHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002733 165 TEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 243 (887)
Q Consensus 165 t~edLa~L~elGI-KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC 243 (887)
+++++..+.+.|= -.|||.|++. + +. . ....| -+++|+........+...+....+ ..++||++||
T Consensus 2 s~~el~~~l~~~~~~~liDvR~~~-e---~~--~---ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~C 68 (100)
T cd01523 2 DPEDLYARLLAGQPLFILDVRNES-D---YE--R---WKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVIC 68 (100)
T ss_pred CHHHHHHHHHcCCCcEEEEeCCHH-H---Hh--h---cccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEEc
Confidence 5667776655542 4799999975 1 11 0 01122 245665421100000012233333 3567999999
Q ss_pred ccCCChHHHHHHHHHHHcCCC
Q 002733 244 KEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 244 ~aGKDRTG~lvALll~~lGv~ 264 (887)
.+|. |+..++..+.. +|..
T Consensus 69 ~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 69 AKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred CCCC-cHHHHHHHHHH-cCce
Confidence 9998 88776666544 5653
No 80
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=92.89 E-value=0.5 Score=47.95 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=49.1
Q ss_pred HcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEE----EEEecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCccCCC
Q 002733 174 EKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVEL----IKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSKEGVW 248 (887)
Q Consensus 174 elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~y----ihIPV~d~~~ps~e~v~~flelI~d-~~~~PVLVHC~aGKD 248 (887)
..|-+.+|.|+... +....... .....-+.. +..|=..+..|.++.+...++++.. ....|+||||.+|..
T Consensus 30 rh~~t~mlsl~a~~--t~~~~pa~--~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~aGIS 105 (172)
T COG5350 30 RHGPTHMLSLLAKG--TYFHRPAV--IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGIS 105 (172)
T ss_pred hcCCceEEEeeccc--ccccCccc--cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeeccccc
Confidence 34899999999864 11111011 111111222 2222233466788999999999853 345799999999999
Q ss_pred hHHHHHHH
Q 002733 249 RTYAMVSR 256 (887)
Q Consensus 249 RTG~lvAL 256 (887)
|+.+++..
T Consensus 106 RStA~A~i 113 (172)
T COG5350 106 RSTAAALI 113 (172)
T ss_pred cchHHHHH
Confidence 99986554
No 81
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=92.88 E-value=0.42 Score=56.50 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=64.3
Q ss_pred hccccCCCEEEEEecCCh---hHHHHHH-HHHHHHhcCCCeEEEEc--CChhh--HhhcCCCCccceeeeccCcccccCC
Q 002733 573 LMWKTTPRTVLVLKKPGP---ALMEEAK-EVASFLYHQEKMNILVE--PDVHD--IFARIPGFGFVQTFYLQDTSDLHER 644 (887)
Q Consensus 573 l~w~~~p~~VlIv~K~~~---~~~~~a~-~l~~~L~~~~~~~V~ve--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (887)
+.+..+|++++||..|.. ....... ++...|.+ .++++.+. +...+ .+.. .. + ...
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la~-------------~~-~-~~~ 168 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVVR-------------TM-D-LSK 168 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHHH-------------Hh-h-hcC
Confidence 333457899999888763 2334443 46667753 45554332 22111 1110 00 1 245
Q ss_pred ccEEEEEcCCchHHHHHHhccCC-------CCcEEEEeCCCCc-cCCCC-----CcccHHHHHHHHHccC
Q 002733 645 VDFVACLGGDGVILHASNLFRGA-------VPPVISFNLGSLG-FLTSH-----PFEDYRQDLRQVIYGN 701 (887)
Q Consensus 645 ~DlVIvLGGDGTlL~Aar~~~~~-------~~PVLGIN~G~LG-FLt~~-----~~ee~~~~L~~ll~G~ 701 (887)
+|.||++||||||=.+++-+... .+|+-=|-+|+-- |-..+ .+.+..+++..++.|.
T Consensus 169 ~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~ 238 (481)
T PLN02958 169 YDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGH 238 (481)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCC
Confidence 79999999999988888766432 3565445777522 21111 1446777888888886
No 82
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=92.74 E-value=0.46 Score=44.15 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=47.0
Q ss_pred CCCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002733 163 QVTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 241 (887)
Q Consensus 163 qpt~edLa~L~elG-IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLV 241 (887)
.++.+++..+.+.| --.|||.|+.. + |. . ....| -+++|+ ..+...+..+....+.||+|
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~-e---~~--~---ghIpg--ainip~--------~~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFD-E---YR--K---MTIPG--SVSCPG--------AELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHH-H---Hh--c---CcCCC--ceeCCH--------HHHHHHHHhcCCCCCCeEEE
Confidence 56888887766655 24699999875 1 11 0 00111 233443 33444444442234679999
Q ss_pred eCccCCChHHHHHHHHHHHcCCC
Q 002733 242 HSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 242 HC~aGKDRTG~lvALll~~lGv~ 264 (887)
||.+|. |+..++..+ ..+|.+
T Consensus 72 ~C~~G~-rs~~a~~~L-~~~G~~ 92 (109)
T cd01533 72 NCAGRT-RSIIGAQSL-INAGLP 92 (109)
T ss_pred ECCCCc-hHHHHHHHH-HHCCCC
Confidence 999998 886655444 445653
No 83
>PLN02204 diacylglycerol kinase
Probab=92.73 E-value=0.59 Score=56.48 Aligned_cols=114 Identities=22% Similarity=0.351 Sum_probs=60.6
Q ss_pred ccceeEeeecCcceeeeee---cCCCccccCCchhHHhhcc-----------ccCCCEEEEEecCCh---hHHHHHHHHH
Q 002733 538 KAEMFLVRTDGFSCNREKV---TESSLAFTHPSTQQQMLMW-----------KTTPRTVLVLKKPGP---ALMEEAKEVA 600 (887)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~l~w-----------~~~p~~VlIv~K~~~---~~~~~a~~l~ 600 (887)
-.+|+.+--.++.++|-.. ....+.|.|++.+. --.| ..+||+++||..|.. ...+...++.
T Consensus 105 ~~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~-~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~~~~~~~V~ 183 (601)
T PLN02204 105 TQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQT-CQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSGSRTWETVS 183 (601)
T ss_pred cccceeeEEEEeeecccCCCcceeEEEeecCCCHHH-HHHHHHHHHHHHhhccCCCceEEEEECCCCCCcchHHHHHHHH
Confidence 3455544433334444332 22345666665543 2334 246889998888752 3445566788
Q ss_pred HHHhcCCCeE--EEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHHHHHHhc
Q 002733 601 SFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVILHASNLF 664 (887)
Q Consensus 601 ~~L~~~~~~~--V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTlL~Aar~~ 664 (887)
..|.+ .+++ |++.+...+...- . ....+ .....|.||++||||||=.+++-+
T Consensus 184 p~f~~-a~i~~~v~~T~~aghA~d~------~-----~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL 238 (601)
T PLN02204 184 PIFIR-AKVKTKVIVTERAGHAFDV------M-----ASISNKELKSYDGVIAVGGDGFFNEILNGY 238 (601)
T ss_pred HHHHH-cCCeEEEEEecCcchHHHH------H-----HHHhhhhccCCCEEEEEcCccHHHHHHHHH
Confidence 87754 3444 5544432111100 0 00011 134579999999999976666633
No 84
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.62 E-value=0.43 Score=43.66 Aligned_cols=85 Identities=12% Similarity=0.067 Sum_probs=46.8
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVH 242 (887)
.++++++..+.+.+=-.|||.|++. | +. . ....| -+++|+..... ..+.+.+ +.....+.||+||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e---~~--~---ghi~g--A~~ip~~~~~~-~~~~~~~---~~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-E---YD--I---GHFKG--AVNPDVDTFRE-FPFWLDE---NLDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-h---hh--c---CEecc--ccCCCcccHhH-hHHHHHh---hhhhcCCCEEEEE
Confidence 4677788776555445899999875 2 11 0 01112 35566542110 0111211 1111456899999
Q ss_pred CccCCChHHHHHHHHHHHcCCC
Q 002733 243 SKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lGv~ 264 (887)
|.+|. |+...+..+ ..+|..
T Consensus 68 C~~G~-rs~~a~~~L-~~~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYL-KERGFK 87 (101)
T ss_pred CCCch-hHHHHHHHH-HHhCCc
Confidence 99998 998766554 445643
No 85
>PRK05320 rhodanese superfamily protein; Provisional
Probab=92.41 E-value=0.63 Score=50.77 Aligned_cols=168 Identities=14% Similarity=0.167 Sum_probs=83.7
Q ss_pred ccCCchHHhHHHHHHHHHHHHHhhhcccCccCC-cchh-HHHHHHhhhhccccCCCCCCCCCCC---ccccccccceEec
Q 002733 69 DQLPPLAIFRSEMKRCCESMHIALENYLTPEDV-RSLD-VWRKLQRLKNVCYDSGFPRGDDYPI---HTLFANWSPVYLS 143 (887)
Q Consensus 69 ~~~pp~~~~r~~~~~~~~~l~~~l~~~~~~~~~-~~~~-i~rkl~rl~n~~~d~g~p~~~gyp~---~t~~~Nf~~V~~s 143 (887)
-.|+...-+|.+|++.|+.+.+.+.=|+.+.|= .++. -..++..+.++.. ..|+-++... ...-+-|..+...
T Consensus 12 ~~i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~--~~~~~~dl~~k~~~~~~~pF~~l~vk 89 (257)
T PRK05320 12 VSLDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLR--ADARFADLQVKESLSDSQPFRRMLVK 89 (257)
T ss_pred eecCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHh--hCCCccCceeecccccCCCchhccch
Confidence 345666889999999999999888888888871 1110 0222222222110 0111111110 1111234442100
Q ss_pred CCCcccc-cC--CCcceEEEcCCCCHhhHHHHHHcCC------cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecC
Q 002733 144 NSKDDIA-SK--DSEVTFCRGGQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVE 214 (887)
Q Consensus 144 ~~~~~~~-~~--~~e~~LYRSgqpt~edLa~L~elGI------KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~ 214 (887)
- ++... .. ...+..-+...++++++..+.+.+- -.|||.|+.. |-. . -...| .+++|+.
T Consensus 90 ~-k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~-----~---Ghi~G--AiniPl~ 157 (257)
T PRK05320 90 L-KREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF-EVD-----V---GTFDG--ALDYRID 157 (257)
T ss_pred h-hhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH-HHc-----c---CccCC--CEeCChh
Confidence 0 00000 00 0001111234678888877665542 3689999976 210 0 01112 3556654
Q ss_pred CCCCCCHHHHHHHHHHHh----cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 215 VRTAPTMEQVEKFASLVS----NSSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 215 d~~~ps~e~v~~flelI~----d~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
.+.+|..++. ...++||+++|++|. |+-.++..++.
T Consensus 158 --------~f~~~~~~l~~~~~~~kdk~IvvyC~~G~-Rs~~Aa~~L~~ 197 (257)
T PRK05320 158 --------KFTEFPEALAAHRADLAGKTVVSFCTGGI-RCEKAAIHMQE 197 (257)
T ss_pred --------HhhhhHHHHHhhhhhcCCCeEEEECCCCH-HHHHHHHHHHH
Confidence 2222222221 124689999999998 99888777654
No 86
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.27 E-value=0.29 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.9
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002733 235 SKKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 235 ~~~PVLVHC~aGKDRTG~lvALl 257 (887)
..+|++|||.+|.+|||+++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 45799999999999999987654
No 87
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=91.17 E-value=0.25 Score=56.79 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=67.1
Q ss_pred CCCHhh-HHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHhc-----
Q 002733 163 QVTEEG-LKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN----- 233 (887)
Q Consensus 163 qpt~ed-La~L~elG--IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~-~ps~e~v~~flelI~d----- 233 (887)
+.++.+ +..|+++| +--+|||.... ..|. ....+..|+.|+.+-..... .|+.+.+..|.+++..
T Consensus 47 ~f~~~dl~~~l~~~~~~vgl~iDltnt~---ryy~---~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~ 120 (393)
T KOG2386|consen 47 RFQPKDLFELLKEHNYKVGLKIDLTNTL---RYYD---KPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDT 120 (393)
T ss_pred ccCHHHHHHHHHhcCceEEEEEecccee---eeec---cccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcc
Confidence 345555 46677764 45789997654 2231 23356789999988776544 5677777777776542
Q ss_pred -CCCCcEEEeCccCCChHHHHHHHHHH-HcCCCHHHHHH
Q 002733 234 -SSKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISG 270 (887)
Q Consensus 234 -~~~~PVLVHC~aGKDRTG~lvALll~-~lGv~~eeIi~ 270 (887)
..+.=|++||++|+.|||.|+..++. -.+++..+|++
T Consensus 121 ~~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik 159 (393)
T KOG2386|consen 121 KLDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIK 159 (393)
T ss_pred cCCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHH
Confidence 12345999999999999996555443 34577777654
No 88
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=91.04 E-value=0.29 Score=55.49 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=30.5
Q ss_pred CCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 215 VRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 215 d~~~ps-~e~v~~flelI~---d~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
+...|+ ...+.+|...+. .....|++|||.+|.+|||+..|+=+.
T Consensus 262 d~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 262 DFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred ccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 344442 344455554443 345789999999999999998887543
No 89
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=91.00 E-value=0.26 Score=47.58 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=27.5
Q ss_pred CccEEEEEcCCchHHHHHHhccCCC-----CcEEEEeCCC
Q 002733 644 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 678 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~~~~-----~PVLGIN~G~ 678 (887)
..|.||++|||||+=.++..+.... +|+.=|-+|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4689999999999999998775443 5666667774
No 90
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=90.74 E-value=1.1 Score=42.21 Aligned_cols=95 Identities=11% Similarity=-0.017 Sum_probs=48.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC---------CCCCHHHHHHHHHHHhcCC
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNSS 235 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~---------~~ps~e~v~~flelI~d~~ 235 (887)
+++++..+.+.+--.|||.|+.+ +... ...+-......| -+++|.... ..++.+.+.+++....-..
T Consensus 3 ~~~~l~~~l~~~~~~ivDvR~~~-~~~~-~~~~~~~ghI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 3 SPDWLAEHLDDPDVRILDARWYL-PDRD-GRKEYLEGHIPG--AVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CHHHHHHHhCCCCeEEEEeecCC-CCCc-hhhHHhhCCCCC--CEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 55666655444335799999984 1100 000000011223 255664321 1234566666655443345
Q ss_pred CCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002733 236 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 236 ~~PVLVHC~aGKDRTG~lvALll~~lGv~ 264 (887)
+.||+|+|..|-.|+..++. .+..+|.+
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~-~l~~~G~~ 106 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWW-TLRYFGHE 106 (122)
T ss_pred CCEEEEECCCCCccHHHHHH-HHHHcCCC
Confidence 78999999997325544443 34556754
No 91
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=89.15 E-value=0.15 Score=58.71 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhc-----CCCCcEEEeCccCCChHHHH
Q 002733 221 MEQVEKFASLVSN-----SSKKPLYLHSKEGVWRTYAM 253 (887)
Q Consensus 221 ~e~v~~flelI~d-----~~~~PVLVHC~aGKDRTG~l 253 (887)
+-.+..|++-+.. ...+||.|||.||.+|||++
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTf 468 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTF 468 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceE
Confidence 4567778776632 13579999999999999993
No 92
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=87.83 E-value=1.4 Score=40.07 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=45.8
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcE-EEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002733 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 244 (887)
Q Consensus 166 ~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~-yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~ 244 (887)
......+....--.|||.|.+. | +. ..+-.. .+|+|+..... +........++|++|+|.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e---~~-------~~~i~~~~~~ip~~~~~~--------~~~~~~~~~~~~ivv~C~ 69 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-E---YE-------RGHIPGAAINIPLSELKA--------AENLLELPDDDPIVVYCA 69 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-H---hh-------hcCCCcceeeeecccchh--------hhcccccCCCCeEEEEeC
Confidence 3344555566789999999985 1 11 111122 77888863211 111110245789999999
Q ss_pred cCCChHHHHHHHHHH
Q 002733 245 EGVWRTYAMVSRWRQ 259 (887)
Q Consensus 245 aGKDRTG~lvALll~ 259 (887)
+|. |++..+..+..
T Consensus 70 ~G~-rS~~aa~~L~~ 83 (110)
T COG0607 70 SGV-RSAAAAAALKL 83 (110)
T ss_pred CCC-ChHHHHHHHHH
Confidence 999 99887777765
No 93
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=87.67 E-value=1.5 Score=40.10 Aligned_cols=87 Identities=24% Similarity=0.222 Sum_probs=45.7
Q ss_pred CHhhHHHHHH-cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC---CCCHHHHHHHHHHHhcCCCCcEE
Q 002733 165 TEEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT---APTMEQVEKFASLVSNSSKKPLY 240 (887)
Q Consensus 165 t~edLa~L~e-lGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~---~ps~e~v~~flelI~d~~~~PVL 240 (887)
+.+++..+.+ .+=-+|||.|+.. + +. . -...| -+++|+.... .+..+.+.+++.......+.||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~-e---~~--~---ghIpg--A~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 70 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPE-E---LK--T---GKIPG--AINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI 70 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHH-H---Hh--c---CcCCC--cEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE
Confidence 3455555544 4335799999975 1 11 0 01122 2556654211 12334444444333223467999
Q ss_pred EeCccCCChHHHHHHHHHHHcCCC
Q 002733 241 LHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 241 VHC~aGKDRTG~lvALll~~lGv~ 264 (887)
++|..|. |+..++.. +..+|..
T Consensus 71 v~c~~g~-~s~~~~~~-l~~~G~~ 92 (106)
T cd01519 71 FYCKAGV-RSKAAAEL-ARSLGYE 92 (106)
T ss_pred EECCCcH-HHHHHHHH-HHHcCCc
Confidence 9999997 77655444 3445643
No 94
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=86.56 E-value=7.9 Score=43.37 Aligned_cols=204 Identities=12% Similarity=0.055 Sum_probs=114.4
Q ss_pred ccCCchHHhHHHHHHHHHHHHHhhhcccCccC------CcchhHHHHHHhhhhccccCCCCCCCCCCCccccccccceEe
Q 002733 69 DQLPPLAIFRSEMKRCCESMHIALENYLTPED------VRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYL 142 (887)
Q Consensus 69 ~~~pp~~~~r~~~~~~~~~l~~~l~~~~~~~~------~~~~~i~rkl~rl~n~~~d~g~p~~~gyp~~t~~~Nf~~V~~ 142 (887)
-.|+..+-+|..|...|++|.+.+-=|+...| +-.-.|-.=++-|++.---.+..--..+++...|.....=+.
T Consensus 14 ~~i~dp~~~~~~l~~~~~~~~vkGrillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~pF~r~kVk~k 93 (308)
T COG1054 14 VPIEDPEALRDPLLALCKALGVKGRILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKPFWRLKVKLK 93 (308)
T ss_pred EecCCHHHHHHHHHHHHHHcCceeEEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCCcceEEEeeh
Confidence 56777789999999999999998888888777 111122222334444211111111122222333333222222
Q ss_pred cCCCcccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHH
Q 002733 143 SNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME 222 (887)
Q Consensus 143 s~~~~~~~~~~~e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e 222 (887)
.-|-.......-.+.-.+|-.+.|+++..+....=.-|||-|.+- |- .|-.+ .+.-.|..+
T Consensus 94 kEIV~lg~~ddv~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~Y-E~--------------~iG~F----~gAv~p~~~ 154 (308)
T COG1054 94 KEIVALGVEDDVDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDY-EV--------------AIGHF----EGAVEPDIE 154 (308)
T ss_pred hhheecCCCCCcCccccccCccCHHHHHHHhcCCCeEEEEcCcce-eE--------------eeeee----cCccCCChh
Confidence 222222222222233445667889999877666447888998864 10 01111 112335556
Q ss_pred HHHHHHHHHh----cCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHHHHHhcccccccccchhhhhccccccchhhh
Q 002733 223 QVEKFASLVS----NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLL 298 (887)
Q Consensus 223 ~v~~flelI~----d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeIi~DYllsn~~~~~~~~~~~~~~m~~~~~~l 298 (887)
.+++|-.++. ...++||++.||.|. |.--..++++. .+++-+
T Consensus 155 tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEKas~~m~~---------------------------------~GF~eV 200 (308)
T COG1054 155 TFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEKASAWMKE---------------------------------NGFKEV 200 (308)
T ss_pred hhhhhHHHHHHHHHhccCCcEEEEcCCce-eehhhHHHHHH---------------------------------hcchhh
Confidence 6666666654 234679999999999 88877777665 133444
Q ss_pred hhhcchhhhhhhhhc-------cccccccccccc
Q 002733 299 EEKYETVKENQDEIQ-------TKNGVFGFGLSV 325 (887)
Q Consensus 299 ~~~~g~~e~~~~~~~-------~~~~~~~~~~r~ 325 (887)
-+=-||+-+|+++.. |-..+|.+++..
T Consensus 201 yhL~GGIl~Y~e~~~~~g~lw~G~cFVFDeRvav 234 (308)
T COG1054 201 YHLEGGILKYLEDVGTEGSLWDGKCFVFDERVAV 234 (308)
T ss_pred hcccchHHHHhhhcCccCceeccceeEecceecc
Confidence 455788888887652 334555555543
No 95
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=86.47 E-value=3.2 Score=37.55 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=42.2
Q ss_pred CHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002733 165 TEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 165 t~edLa~L~elG--IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVH 242 (887)
++++++.+.+.+ --.+||.|+.. + +. . ....| -+++|.. .+......+....+.||+++
T Consensus 2 s~~~l~~~~~~~~~~~~liDvR~~~-e---~~--~---ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~~ 62 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPE-E---YE--A---GHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVLA 62 (95)
T ss_pred CHHHHHHHHHcCCCCeEEEECCCHH-H---HH--h---CCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEEE
Confidence 566777665554 34689999865 1 11 0 01112 2445532 12111122212236789999
Q ss_pred CccCCChHHHHHHHHHHHcCCC
Q 002733 243 SKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lGv~ 264 (887)
|..|. |+...+.. +..+|.+
T Consensus 63 c~~G~-rs~~aa~~-L~~~G~~ 82 (95)
T cd01534 63 DDDGV-RADMTASW-LAQMGWE 82 (95)
T ss_pred CCCCC-hHHHHHHH-HHHcCCE
Confidence 99998 87655444 4556653
No 96
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.18 E-value=4.5 Score=36.66 Aligned_cols=80 Identities=18% Similarity=0.299 Sum_probs=47.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 238 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d----~~~ps~e~v~~flelI~d--~~~~P 238 (887)
|++++..+.+.+=-.|||.|+.. + |. . -...|- +|+|... ......+.+..+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~-~---~~--~---~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE-E---YE--R---GHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH-H---HH--H---SBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH-H---HH--c---CCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46677666655778999999875 1 11 1 112233 7788732 222334444444433322 44668
Q ss_pred EEEeCccCCChHHHHHHH
Q 002733 239 LYLHSKEGVWRTYAMVSR 256 (887)
Q Consensus 239 VLVHC~aGKDRTG~lvAL 256 (887)
|+|+|..|. |++.+++.
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 88887666
No 97
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=86.15 E-value=1.9 Score=42.86 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=52.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCC-cEEEEEecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 240 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~G-I~yihIPV~d~~~ps~e~v~~flelI~---d~~~~PVL 240 (887)
+-++...|.+.|=+..||.|.++ |- +..+ -.-|+||+..........=.+|.+.+. -..+..|+
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-Ef-----------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-EF-----------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-Hh-----------hccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 55677778878879999999986 21 1222 357888885322211111234555543 23456899
Q ss_pred EeCccCCChHHHHHHHHHH
Q 002733 241 LHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 241 VHC~aGKDRTG~lvALll~ 259 (887)
|||.+|+ |...+.-.+..
T Consensus 94 f~C~SG~-Rs~~A~~~l~s 111 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILVS 111 (136)
T ss_pred EEeccCc-chhHHHHHHHH
Confidence 9999999 98887666554
No 98
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=85.90 E-value=2.6 Score=38.53 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 002733 163 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 239 (887)
Q Consensus 163 qpt~edLa~L~elG--IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d-~~~~PV 239 (887)
|++++++..+.+.+ --.|||+|+.. + +. . ....|. +++|. ..+..+.+.+.. ..+.|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~-e---~~--~---~hI~ga--~~ip~--------~~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE-E---LE--I---AFLPGF--LHLPM--------SEIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH-H---Hh--c---CcCCCC--EecCH--------HHHHHHHHHhcccCCCCeE
Confidence 46777777665554 34799999865 1 10 0 011222 34443 233344444422 247799
Q ss_pred EEeCccCCChHHHHHHHHHHHcCCC
Q 002733 240 YLHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 240 LVHC~aGKDRTG~lvALll~~lGv~ 264 (887)
+++|..|. |+...+..+.. +|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999997 87666555544 5643
No 99
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=85.69 E-value=1.6 Score=39.57 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=43.4
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVH 242 (887)
.++++++..+.+.+ -.|||+|+.+ + +. . -...| .+++|... +......+ ..+.||+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~-e---~~--~---~hi~g--a~~ip~~~--------~~~~~~~~--~~~~~iv~~ 60 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPD-E---YL--R---ERIPG--ARLVPLSQ--------LESEGLPL--VGANAIIFH 60 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHH-H---HH--h---CcCCC--CEECChhH--------hcccccCC--CCCCcEEEE
Confidence 45788887766667 6899999975 1 11 0 01112 24555431 11111112 456799999
Q ss_pred CccCCChHHHHHHHHHH
Q 002733 243 SKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 243 C~aGKDRTG~lvALll~ 259 (887)
|..|. |+..++..++.
T Consensus 61 c~~g~-~s~~~~~~L~~ 76 (99)
T cd01527 61 CRSGM-RTQQNAERLAA 76 (99)
T ss_pred eCCCc-hHHHHHHHHHH
Confidence 99998 87776555544
No 100
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.57 E-value=0.47 Score=60.10 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEeCccCCChHHHH
Q 002733 221 MEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAM 253 (887)
Q Consensus 221 ~e~v~~flelI~d~---~~~PVLVHC~aGKDRTG~l 253 (887)
+..+.+|++-+..- ..+|++|||.+|.+|||+.
T Consensus 712 ~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~f 747 (1087)
T KOG4228|consen 712 PTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCF 747 (1087)
T ss_pred chHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceE
Confidence 45677777766432 3589999999999999993
No 101
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=85.57 E-value=3.1 Score=40.06 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=19.7
Q ss_pred CCCCcEEEeCc-cCCChHHHHHHHHHHHcCC
Q 002733 234 SSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 234 ~~~~PVLVHC~-aGKDRTG~lvALll~~lGv 263 (887)
..+.||+++|. +|. |+..++.++ ..+|.
T Consensus 84 ~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 84 ERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred CCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 45679999997 566 888776444 55675
No 102
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=84.43 E-value=2.1 Score=52.02 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEeCccCCChHHHHHH----HHHHHcCCCHHHH
Q 002733 221 MEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVS----RWRQYMARCASQI 268 (887)
Q Consensus 221 ~e~v~~flelI~d~---~~~PVLVHC~aGKDRTG~lvA----Lll~~lGv~~eeI 268 (887)
...+..|.+-+... ..-||+|||..|.+|||+-++ |-|++.|+-.-||
T Consensus 909 arslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDI 963 (1004)
T KOG0793|consen 909 ARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDI 963 (1004)
T ss_pred hHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhH
Confidence 45677788777421 234999999999999999322 2345556655555
No 103
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=84.12 E-value=3.3 Score=37.00 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002733 164 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 164 pt~edLa~L~elGI-KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVH 242 (887)
++++++..+.+.+- -.|||+|+.. + +. . ......| .+++|. ..+.+.+..+ ..+.||+||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e---~~--~-~~~hi~g--a~~ip~--------~~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-S---YA--A-LPDHIPG--AIHLDE--------DSLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-H---Hh--c-ccCCCCC--CeeCCH--------HHHHHHHhhc--CCCCCEEEE
Confidence 45667765554432 4699999874 1 10 0 0000011 223333 2344444444 457899999
Q ss_pred CccCCChHHHHHHHHHHHcCC
Q 002733 243 SKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lGv 263 (887)
|..|. |+..++..++. +|.
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~ 81 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGF 81 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCC
Confidence 99887 77776555544 454
No 104
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=83.92 E-value=1.1 Score=50.01 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=40.8
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~ll 698 (887)
.+.|.+|++|||||+-.|..+.....+||+||.. | ++||-|.++ .+.+++.++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~--~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALN--TIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHH--HHHHHHHHHH
Confidence 3689999999999998887776556799999964 3 788888643 3445555553
No 105
>PRK14071 6-phosphofructokinase; Provisional
Probab=83.70 E-value=0.99 Score=51.63 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=40.3
Q ss_pred CccEEEEEcCCchHHHHHHhccCCCCcEEEEeC----------CCCccCCCCCcccHHHHHHHHHc
Q 002733 644 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 699 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~----------G~LGFLt~~~~ee~~~~L~~ll~ 699 (887)
++|.+|++|||||+-.+.++.....+||+||-. -++||-|..+. ..++++++..
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 689999999999997766655434899999954 37999887654 5556666543
No 106
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=83.67 E-value=1.2 Score=50.76 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=40.4
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC----------CCCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~----------G~LGFLt~~~~ee~~~~L~~l 697 (887)
...|.+|++|||||+-.|..+......|++||-- =++||.|..+. ..+++.++
T Consensus 93 ~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~~--~~eaid~l 155 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALET--AVEAIDNL 155 (347)
T ss_pred cCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHHH--HHHHHHHH
Confidence 4689999999999999998887666699999853 27999987542 33444444
No 107
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=83.61 E-value=1.8 Score=40.44 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=47.5
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhh---hHHhhhcCCcEEEEEecCCC-----CCCCHHHHHHHHHHHhcCCC
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVR-----TAPTMEQVEKFASLVSNSSK 236 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~---e~~~~~~~GI~yihIPV~d~-----~~ps~e~v~~flelI~d~~~ 236 (887)
+++++..+.+.+=-.|||.|+.. +-...... +...-...| -+++|+... ..+..+.+.+++.-+.-..+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45566655444324799999975 21110000 000001112 244554311 11334555555444322357
Q ss_pred CcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002733 237 KPLYLHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 237 ~PVLVHC~aGKDRTG~lvALll~~lGv~ 264 (887)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 79999999987 877765544 445654
No 108
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=83.48 E-value=4.4 Score=36.24 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=42.4
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 244 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~ 244 (887)
+++++..+.+.++ .|||+|+.. + +. . -...| .+++|. +.+...+..+ ..+.|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~-~---~~--~---~hipg--A~~ip~--------~~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQ-E---FE--K---GHIKG--AINIPL--------DELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHH-H---Hh--c---CCCCC--CEeCCH--------HHHHHHHHhc--CCCCcEEEEcC
Confidence 5677777775565 599999875 1 11 0 00111 244443 2343333334 34679999999
Q ss_pred cCCChHHHHHHHHHHHcCC
Q 002733 245 EGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 245 aGKDRTG~lvALll~~lGv 263 (887)
.|. |+..++..+ ..+|.
T Consensus 60 ~g~-~a~~~a~~L-~~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARIL-TQNGF 76 (90)
T ss_pred CCh-hHHHHHHHH-HHCCC
Confidence 987 765554444 44554
No 109
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=83.27 E-value=6.2 Score=48.32 Aligned_cols=173 Identities=14% Similarity=0.063 Sum_probs=82.6
Q ss_pred ccCCchHHhHHHHHHHHHHHHHhhh----cccCccCCcchhHHHHHHhh--hhc-cccCCCC--CCCCCCCccccccccc
Q 002733 69 DQLPPLAIFRSEMKRCCESMHIALE----NYLTPEDVRSLDVWRKLQRL--KNV-CYDSGFP--RGDDYPIHTLFANWSP 139 (887)
Q Consensus 69 ~~~pp~~~~r~~~~~~~~~l~~~l~----~~~~~~~~~~~~i~rkl~rl--~n~-~~d~g~p--~~~gyp~~t~~~Nf~~ 139 (887)
..||+...|...|.+ |-+.-. -|+...+..+..+|--|+.+ .|+ .+|+|++ ..+|+|..+..+.
T Consensus 61 ~~lp~~~~l~~~l~~----lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~--- 133 (610)
T PRK09629 61 GLLPDTADLEQLFGE----LGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP--- 133 (610)
T ss_pred CCCCCHHHHHHHHHH----cCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC---
Confidence 455655444443333 433222 23333333344556556655 244 7999999 6778875544221
Q ss_pred eEecCCCcccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCc-EEEEEecCC---
Q 002733 140 VYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKV-ELIKIPVEV--- 215 (887)
Q Consensus 140 V~~s~~~~~~~~~~~e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI-~yihIPV~d--- 215 (887)
+..++. ...+-.+-..+.+++....+.+=-.|||-|+.+ +-.... . ...+...| .-+++|...
T Consensus 134 ~~~~~~---------~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~-ef~G~~--~-~~~r~GHIPGAvnip~~~~~~ 200 (610)
T PRK09629 134 VAGGPV---------TLTLHDEPTATREYLQSRLGAADLAIWDARAPT-EYSGEK--V-VAAKGGHIPGAVNFEWTAGMD 200 (610)
T ss_pred CCCcce---------eeccCCcccccHHHHHHhhCCCCcEEEECCCcc-ccCCcc--c-ccccCCCCCCCeecCHHHhcC
Confidence 000000 000000112355555444333223589999875 221110 0 00111111 123445421
Q ss_pred --CCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002733 216 --RTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 216 --~~~ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv 263 (887)
..-.+.+++.++++-+.-..+.||++||.+|. |++.++..++ ++|.
T Consensus 201 ~~~~lk~~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~~~L~-~lG~ 248 (610)
T PRK09629 201 KARNLRIRQDMPEILRDLGITPDKEVITHCQTHH-RSGFTYLVAK-ALGY 248 (610)
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCEEEECCCCh-HHHHHHHHHH-HcCC
Confidence 11245566666665432245779999999997 8887665543 4554
No 110
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=1.6 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=23.4
Q ss_pred cCCCCcEEEeCccCCChHHHHHHHHHHH
Q 002733 233 NSSKKPLYLHSKEGVWRTYAMVSRWRQY 260 (887)
Q Consensus 233 d~~~~PVLVHC~aGKDRTG~lvALll~~ 260 (887)
+....||||||.-|.|||.=++++...+
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA~Ll 398 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLAMLL 398 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHHHHH
Confidence 3567899999999999999988876554
No 111
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=82.35 E-value=7.3 Score=36.96 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=45.5
Q ss_pred CHhhHHHHHHc-CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC--CCCHHHHHHHHHHHhcCCCCcEEE
Q 002733 165 TEEGLKWLMEK-GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT--APTMEQVEKFASLVSNSSKKPLYL 241 (887)
Q Consensus 165 t~edLa~L~el-GIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~--~ps~e~v~~flelI~d~~~~PVLV 241 (887)
+++++..+.+. .=-.|||.|+.. + + +. .-...| -+++|..... .+.......+...+ ..+.||++
T Consensus 2 s~~el~~~l~~~~~~~vIDvR~~~-e---~---~~-~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~ivv 69 (117)
T cd01522 2 TPAEAWALLQADPQAVLVDVRTEA-E---W---KF-VGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVLL 69 (117)
T ss_pred CHHHHHHHHHhCCCeEEEECCCHH-H---H---hc-ccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEEE
Confidence 56666666554 335699999875 1 1 00 001112 3555654211 11222222222222 35789999
Q ss_pred eCccCCChHHHHHHHHHHHcCCC
Q 002733 242 HSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 242 HC~aGKDRTG~lvALll~~lGv~ 264 (887)
+|..|. |+..++..++. +|.+
T Consensus 70 ~C~~G~-rs~~aa~~L~~-~G~~ 90 (117)
T cd01522 70 LCRSGN-RSIAAAEAAAQ-AGFT 90 (117)
T ss_pred EcCCCc-cHHHHHHHHHH-CCCC
Confidence 999997 88877665543 4543
No 112
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=81.99 E-value=4.3 Score=45.21 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=71.7
Q ss_pred hh-ccccCCCC--CCCCCCCccccccccceEecCCCcccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccC
Q 002733 114 KN-VCYDSGFP--RGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKD 190 (887)
Q Consensus 114 ~n-~~~d~g~p--~~~gyp~~t~~~Nf~~V~~s~~~~~~~~~~~e~~LYRSgqpt~edLa~L~elGIKTVIDLR~e~~Ee 190 (887)
.| ..+|+|++ .++|||-.+..+....-.++--. +. ..-.+.+.++...+.+-+.|||-|+.+ +-
T Consensus 117 ~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~f~~~~--~~----------~~~~~~~~~~~~~~~~~~~liDaR~~~-rf 183 (285)
T COG2897 117 ENVRILDGGLPAWKAAGLPLETEPPEPPPTTFSAKY--NV----------KAVVDATLVADALEVPAVLLIDARSPE-RF 183 (285)
T ss_pred CceEEecCCHHHHHHcCCCccCCCCCCCCccccccC--Cc----------cccCCHHHHHHHhcCCCeEEEecCCHH-Hh
Confidence 44 46889999 79999876654444433311100 00 002345667777777777799999986 11
Q ss_pred cchhhhhHHhhhcCCc-EEEEEecCC-----CCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHH
Q 002733 191 NFYEAAIDDAILSGKV-ELIKIPVEV-----RTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQY 260 (887)
Q Consensus 191 ~~~~~~e~~~~~~~GI-~yihIPV~d-----~~~ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll~~ 260 (887)
.... .+........| --+++|..+ ..-.+.+.+..|.+..--...++|+++|..|. |+...+..+..+
T Consensus 184 ~G~~-~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~~vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 184 RGKE-PEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDKEVIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred CCCC-CCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCCCEEEEcCCch-HHHHHHHHHHHh
Confidence 1100 00000001112 123333321 12234566677765532256789999999999 888876666554
No 113
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=80.74 E-value=5.2 Score=44.86 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002733 219 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 219 ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv 263 (887)
.+.+++++.+.-..-..+.||+++|..|. |+..++..+. .+|.
T Consensus 252 ~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~ 294 (320)
T PLN02723 252 LPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGK 294 (320)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCC
Confidence 45566666554321135679999999987 7766655554 4664
No 114
>PRK14072 6-phosphofructokinase; Provisional
Probab=80.73 E-value=1.8 Score=50.57 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=38.3
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~ee~~~~L~~l 697 (887)
.++|.+|++|||||+-.|.++.. +..+||+||-- -+.||-|..+ .+.+++.++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 36899999999999988877553 34599999954 3788877643 344555555
No 115
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=80.72 E-value=5.5 Score=43.64 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002733 220 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 220 s~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~ 264 (887)
+.+++++++.-..-..+.||+++|..|. |+..++.++. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 3556666554321235679999999999 8877655554 56654
No 116
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=80.61 E-value=6.7 Score=36.32 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=43.7
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVH 242 (887)
.++++++..+.+.+=-.|||+|+.. + +. . ....| -+++|. ..+..++..+ ..+.|++|+
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~~-e---~~--~---ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~ 64 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDPQ-S---FA--M---GHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVM 64 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCHH-H---Hh--c---CCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEE
Confidence 3577787665544325799999875 1 10 0 00111 133332 3455555554 357799999
Q ss_pred CccCCChHHHHHHHHHHHcCC
Q 002733 243 SKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lGv 263 (887)
|..|. |+..++..+ ...|.
T Consensus 65 c~~g~-~s~~a~~~L-~~~G~ 83 (108)
T PRK00162 65 CYHGN-SSQGAAQYL-LQQGF 83 (108)
T ss_pred eCCCC-CHHHHHHHH-HHCCc
Confidence 99998 765554433 33454
No 117
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=80.35 E-value=2 Score=50.69 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=39.2
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~ee~~~~L~~l 697 (887)
.++|.+|+||||||+-.|..+.. +..+||+||-- =++||-|.++ ...+++..+
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~--~~~~aI~~~ 242 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE--EAQNAIRAA 242 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH--HHHHHHHHH
Confidence 46999999999999988877654 34689999954 3789988744 344555544
No 118
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=79.89 E-value=5.1 Score=38.47 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.9
Q ss_pred CCCCcEEEeCc-cCCChHHHHHHHHHH
Q 002733 234 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 259 (887)
Q Consensus 234 ~~~~PVLVHC~-aGKDRTG~lvALll~ 259 (887)
..+.+|+|||. +|. |+..++..+..
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35789999997 887 98887777665
No 119
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=79.80 E-value=2.3 Score=48.54 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.6
Q ss_pred HHHHhcCCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 228 ASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 228 lelI~d~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
++.+ ...+.+|||||..|.|||..+.+|...
T Consensus 224 ~~~l-~~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 224 ADLL-HDEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp HHHH-HTT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred HHHh-hccCceEEEEcCCCCcccHHHHHHHHH
Confidence 3444 346789999999999999999988865
No 120
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=78.23 E-value=5.7 Score=37.79 Aligned_cols=86 Identities=19% Similarity=0.355 Sum_probs=45.4
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHH--HHHHHhcCCCCcE
Q 002733 163 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKPL 239 (887)
Q Consensus 163 qpt~edLa~L~elGI-KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~--flelI~d~~~~PV 239 (887)
.++++++..+.+.+- -.|||+|+.. + +. . ....| .+++|...... ....+.. +.... ...++||
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~-e---~~--~---~hIpg--ai~ip~~~~~~-~~~~~~~~~~~~~~-~~~~~~i 75 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKV-H---FE--I---CRLPE--AINIPLSELLS-KAAELKSLQELPLD-NDKDSPI 75 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHH-H---hh--c---ccCCC--CeEccHHHHhh-hhhhhhhhhhcccc-cCCCCcE
Confidence 568888877776632 3589999975 1 10 0 01122 34556532110 0000100 11111 1457899
Q ss_pred EEeCccCCChHHHHHHHHHHHcCC
Q 002733 240 YLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 240 LVHC~aGKDRTG~lvALll~~lGv 263 (887)
+++|.+|. |+...+..++ .+|.
T Consensus 76 vv~C~~G~-rs~~aa~~L~-~~G~ 97 (122)
T cd01526 76 YVVCRRGN-DSQTAVRKLK-ELGL 97 (122)
T ss_pred EEECCCCC-cHHHHHHHHH-HcCC
Confidence 99999997 8776555443 3465
No 121
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=78.23 E-value=2 Score=49.90 Aligned_cols=54 Identities=28% Similarity=0.330 Sum_probs=39.7
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~ll 698 (887)
.++|.+|++|||||+-.|.++.. ..++||+||-- | ++||-|.++ .+.++++++.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~ 179 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVI 179 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHH
Confidence 36899999999999998877653 34799999953 2 788887643 3445555554
No 122
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=77.65 E-value=4.8 Score=46.23 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=47.3
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcC-CcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSG-KVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 241 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~-GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLV 241 (887)
.++.+++..+.+.+=-.|||.|+++ | +. . .... +...+|+|+...... ..+.+.+....+.||+|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~-E---~~--~---ghI~~~~gAinIPl~~l~~~-----~~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPH-E---VL--L---KDLPEGGASLKLPLSAITDD-----ADILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHH-H---hh--h---ccCCCCCccEeCcHHHhhcc-----hhhhhhccccCCCcEEE
Confidence 4567777666555423799999986 2 10 0 0111 124678886522110 01222222222349999
Q ss_pred eCccCCChHHHHHHHHHHHcCC
Q 002733 242 HSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 242 HC~aGKDRTG~lvALll~~lGv 263 (887)
||.+|. |+..++..++. +|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999999 98877666654 454
No 123
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=77.51 E-value=2.3 Score=47.89 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~ll 698 (887)
.+.|.+|++|||||+-.|.++.. .++||+||-. | ++||-|.++ .+.+.++.+.
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~e-~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~--~~~~~i~~i~ 153 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLTE-HGFPCVGLPGTIDNDIPGTDYTIGFDTALN--TVVEAIDRIR 153 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHHH-cCCCEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHHH
Confidence 46899999999999988776654 4799999954 3 789988744 3344455553
No 124
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=77.51 E-value=2.5 Score=49.70 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=68.7
Q ss_pred hhccccCCCEEEEEecCCh-hHH-HHHHHHHHHHhcCCC-eEEEEcCChhhHhhc-------------------CCCCcc
Q 002733 572 MLMWKTTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEK-MNILVEPDVHDIFAR-------------------IPGFGF 629 (887)
Q Consensus 572 ~l~w~~~p~~VlIv~K~~~-~~~-~~a~~l~~~L~~~~~-~~V~ve~~~~~~~~~-------------------~~~~~~ 629 (887)
.+-|+....+++|+.--++ +-+ ...+.++..+.+..+ .+|+--.+=.+-|-. ..+ ..
T Consensus 73 ~i~f~p~~~riaIvtsGG~~PGmN~vIr~iv~~a~~~~gv~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GG-Ti 151 (443)
T PRK06830 73 KIYFDPSKVKAAIVTCGGLCPGLNDVIRAIVLELHHHYGVRRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGG-TI 151 (443)
T ss_pred eeEEcCcccEEEEECCCCCchHHHHHHHHHHHHHHHhCCCeEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCC-cc
Confidence 3566666688999988775 333 344566666544334 667644332221110 000 00
Q ss_pred cee-eeccCcccc-----cCCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCccCCCCCcc
Q 002733 630 VQT-FYLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFE 688 (887)
Q Consensus 630 ~~~-~~~~~~~~~-----~~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~e 688 (887)
..+ ...++.+.+ ..++|.+|++|||||+-.|.++.. +..+||+||-- =++||-|.++
T Consensus 152 LGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~-- 229 (443)
T PRK06830 152 LGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE-- 229 (443)
T ss_pred ccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH--
Confidence 000 000111111 147999999999999988877554 34689999954 2788888643
Q ss_pred cHHHHHHHH
Q 002733 689 DYRQDLRQV 697 (887)
Q Consensus 689 e~~~~L~~l 697 (887)
...+++..+
T Consensus 230 ~a~~aI~~~ 238 (443)
T PRK06830 230 KATEAIRCA 238 (443)
T ss_pred HHHHHHHHH
Confidence 344455544
No 125
>PLN02564 6-phosphofructokinase
Probab=76.65 E-value=2.7 Score=49.92 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=37.9
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~ee~~~~L~~l 697 (887)
.++|.+|++|||||+-.|.++.. +..++|+||-- =++||-|.++ .+.+++.++
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~--~~~~aI~~i 242 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAA 242 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH--HHHHHHHHH
Confidence 37999999999999998877654 33455999954 2788887643 344555555
No 126
>PLN02884 6-phosphofructokinase
Probab=76.63 E-value=2.3 Score=49.53 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=69.1
Q ss_pred hhccccCCCEEEEEecCCh-hHH-HHHHHHHHHHhcCCCe-EEEEcCC-hhhHhhcC--------------CCC--ccce
Q 002733 572 MLMWKTTPRTVLVLKKPGP-ALM-EEAKEVASFLYHQEKM-NILVEPD-VHDIFARI--------------PGF--GFVQ 631 (887)
Q Consensus 572 ~l~w~~~p~~VlIv~K~~~-~~~-~~a~~l~~~L~~~~~~-~V~ve~~-~~~~~~~~--------------~~~--~~~~ 631 (887)
.+-|+....+|+|+.--++ +-+ ...+.++.++.. .|+ +|+--.+ ..-.+... ... .+..
T Consensus 46 ~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LG 124 (411)
T PLN02884 46 KIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLG 124 (411)
T ss_pred eEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceec
Confidence 4666777789999998775 333 334566666543 466 6763222 11111100 000 0000
Q ss_pred ee-eccCcccc-----cCCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC----------CCCccCCCCCcccH
Q 002733 632 TF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDY 690 (887)
Q Consensus 632 ~~-~~~~~~~~-----~~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~----------G~LGFLt~~~~ee~ 690 (887)
+- +.....++ ..++|.+|++|||||+-.|.++.. +..+||+||-- =++||-|.++ .+
T Consensus 125 tsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~--~~ 202 (411)
T PLN02884 125 VSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE--EA 202 (411)
T ss_pred cCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH--HH
Confidence 00 00001111 246899999999999988877554 24589999943 2789888743 35
Q ss_pred HHHHHHHH
Q 002733 691 RQDLRQVI 698 (887)
Q Consensus 691 ~~~L~~ll 698 (887)
.++++++.
T Consensus 203 ~~ai~~l~ 210 (411)
T PLN02884 203 QRAINSAY 210 (411)
T ss_pred HHHHHHHH
Confidence 55666553
No 127
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=76.33 E-value=8 Score=44.80 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=44.9
Q ss_pred CccEEEEEcCCchHHHHHHh-cc--CCCCcEEEEeCCCC--c---cCCC-C----CcccHHHHHHHHHccCCCCCceeeE
Q 002733 644 RVDFVACLGGDGVILHASNL-FR--GAVPPVISFNLGSL--G---FLTS-H----PFEDYRQDLRQVIYGNNTLDGVYIT 710 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~-~~--~~~~PVLGIN~G~L--G---FLt~-~----~~ee~~~~L~~ll~G~~~~~~~~i~ 710 (887)
..|+|+|.|||||+=-++-- |. ....||-=+-.|.. + -|.. | ....+-+++..+++++.
T Consensus 116 ~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~-------- 187 (535)
T KOG4435|consen 116 QEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEK-------- 187 (535)
T ss_pred CCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccc--------
Confidence 34999999999998766542 22 23456533333321 1 1211 1 12234456666777762
Q ss_pred EeeEEEEEEEeCCeecCCccccceeeEEE
Q 002733 711 LRMRLCCEIFRNGKAMPGKVFDVLNEVVV 739 (887)
Q Consensus 711 ~R~rL~~~V~~~G~~~~~~~~~ALNDVvI 739 (887)
.+.+.-+|...|... ...++||++.-
T Consensus 188 -ksv~~fdv~~~gs~l--~P~fgl~glsw 213 (535)
T KOG4435|consen 188 -KSVYAFDVTTEGSTL--APEFGLGGLSW 213 (535)
T ss_pred -cceEEEEeccCCCcc--ccccccCccch
Confidence 123333444455543 34568888743
No 128
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=76.23 E-value=2.5 Score=47.76 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=39.2
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~ll 698 (887)
.+.|.+|++|||||+-.|..+.. ..+||+||.. | ++||-|..+. +.+.++.+.
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~~-~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~ 155 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLAD-KGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLH 155 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHHh-cCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHH
Confidence 36899999999999977766544 5699999954 3 6888887554 445555554
No 129
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=73.83 E-value=6.5 Score=37.21 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=36.2
Q ss_pred cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHH
Q 002733 178 KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 178 KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALl 257 (887)
++|||.|+++ + +. . -...| -+++|.. ++...++.+....+.|++++|.+|. |+..++..+
T Consensus 21 ~~lIDvR~~~-e---f~--~---ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~L 80 (104)
T PRK10287 21 EHWIDVRVPE-Q---YQ--Q---EHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKEIL 80 (104)
T ss_pred CEEEECCCHH-H---Hh--c---CCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHHHH
Confidence 6899999975 1 11 0 01111 2445542 3433333332234578999999996 877776555
Q ss_pred HHHcCC
Q 002733 258 RQYMAR 263 (887)
Q Consensus 258 l~~lGv 263 (887)
.. +|.
T Consensus 81 ~~-~G~ 85 (104)
T PRK10287 81 SE-MGY 85 (104)
T ss_pred HH-cCC
Confidence 43 453
No 130
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=73.03 E-value=5.9 Score=45.22 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||....-.......++.+.|.+ .++++.+-..+.. .+....+.. -.... ..++|+||.||| |+.
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVVS----EPTDESVEE----GVKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 478999986543323356778888854 4666554222110 011000000 00011 247899999999 999
Q ss_pred HHHHHhcc-------------------CCCCcEEEEeC
Q 002733 658 LHASNLFR-------------------GAVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~-------------------~~~~PVLGIN~ 676 (887)
+-+++.+. ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 99998763 34579999975
No 131
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=72.40 E-value=10 Score=39.11 Aligned_cols=75 Identities=9% Similarity=0.150 Sum_probs=44.0
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc---h
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 656 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG---T 656 (887)
++|+||-...... ..|+++|.+ .|.++.+-+... .+.++ .+.+|.||+.||-| .
T Consensus 2 ~~iliid~~dsf~----~~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~-l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT----FNLVDLIRK-LGVPMQVVNVED-----------------LDLDE-VENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH----HHHHHHHHH-cCCcEEEEECCc-----------------cChhH-hccCCEEEECCCCCChHH
Confidence 4788887766433 336777754 455555422100 01112 23579999999999 2
Q ss_pred ---HHHHHHhccCCCCcEEEEeCCC
Q 002733 657 ---ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 657 ---lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
++...+.+ ..++|||||-+|.
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 22333332 3478999999986
No 132
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=71.93 E-value=11 Score=35.34 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHH
Q 002733 176 GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVS 255 (887)
Q Consensus 176 GIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvA 255 (887)
--+.+||.|+.+ + +. . ....| -+++|. ..+...+..+....+.||+++|..|. |+...+.
T Consensus 17 ~~~~lIDvR~~~-e---f~--~---ghIpg--Ainip~--------~~l~~~l~~~~~~~~~~vvlyC~~G~-rS~~aa~ 76 (101)
T TIGR02981 17 AAEHWIDVRIPE-Q---YQ--Q---EHIQG--AINIPL--------KEIKEHIATAVPDKNDTVKLYCNAGR-QSGMAKD 76 (101)
T ss_pred cCCEEEECCCHH-H---Hh--c---CCCCC--CEECCH--------HHHHHHHHHhCCCCCCeEEEEeCCCH-HHHHHHH
Confidence 557899999875 1 10 0 01112 244443 23433333332234678999999998 8888766
Q ss_pred HHHHHcCC
Q 002733 256 RWRQYMAR 263 (887)
Q Consensus 256 Lll~~lGv 263 (887)
.+.. +|.
T Consensus 77 ~L~~-~G~ 83 (101)
T TIGR02981 77 ILLD-MGY 83 (101)
T ss_pred HHHH-cCC
Confidence 5554 453
No 133
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=71.57 E-value=7.5 Score=43.76 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=46.3
Q ss_pred cCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHH----HhcCCC
Q 002733 161 GGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASL----VSNSSK 236 (887)
Q Consensus 161 Sgqpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flel----I~d~~~ 236 (887)
+..++++++..+.+.+=-+|||.|... | +. . -...| -+|+|+. .+.+|... +....+
T Consensus 111 ~~~is~~el~~~l~~~~~vlIDVR~~~-E---~~--~---GhI~G--Ai~ip~~--------~~~~~~~~l~~~~~~~kd 171 (314)
T PRK00142 111 GTYLKPKEVNELLDDPDVVFIDMRNDY-E---YE--I---GHFEN--AIEPDIE--------TFREFPPWVEENLDPLKD 171 (314)
T ss_pred CcccCHHHHHHHhcCCCeEEEECCCHH-H---Hh--c---CcCCC--CEeCCHH--------HhhhhHHHHHHhcCCCCc
Confidence 346788888766554335799999865 1 10 0 01112 2445543 22222222 212356
Q ss_pred CcEEEeCccCCChHHHHHHHHHH
Q 002733 237 KPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 237 ~PVLVHC~aGKDRTG~lvALll~ 259 (887)
+||++||++|. |....+++++.
T Consensus 172 k~IvvyC~~G~-Rs~~aa~~L~~ 193 (314)
T PRK00142 172 KKVVMYCTGGI-RCEKASAWMKH 193 (314)
T ss_pred CeEEEECCCCc-HHHHHHHHHHH
Confidence 89999999999 99887666554
No 134
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=69.26 E-value=30 Score=35.17 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=46.1
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCc-chhhhh--HH--hhhcCCcEEEEEec---CCCCCCCHHHHHHHHHHH-hc
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDN-FYEAAI--DD--AILSGKVELIKIPV---EVRTAPTMEQVEKFASLV-SN 233 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~-~~~~~e--~~--~~~~~GI~yihIPV---~d~~~ps~e~v~~flelI-~d 233 (887)
.++.+++..+.+.+=..|||.|+.. +.+ .+.... .. .-...| -+++|. .....+..+.+.+.+..+ ..
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~-~~~~e~~~G~~~~~~~~~HIPG--Av~ip~~~~~~l~~~~~~~~~~~l~~~~~~ 113 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRP-PKPKNLLEGTVWRDEPRLNIPG--SLWLPNTGYGNLAPAWQAYFRRGLERATGG 113 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCc-cccccccccceeccccCCCCCC--cEEecccCCCCCCCchhHHHHHHHHHhcCC
Confidence 5688888877666545699999754 110 000000 00 001223 233442 211122222232222211 11
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv 263 (887)
..+.||+++|..|.-|+..++.++ ..+|.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L-~~~G~ 142 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRA-LAYGY 142 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHH-HhcCC
Confidence 357899999999875666544444 33453
No 135
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=69.20 E-value=6.7 Score=44.74 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=51.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||....-.......++...|.+ .++++.+-..+.. .+....+... .... ..++|+||.||| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVEA----DPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 378999986553223356778888854 4666553222210 1111000000 0011 247899999999 999
Q ss_pred HHHHHhccC-------------------CCCcEEEEeC
Q 002733 658 LHASNLFRG-------------------AVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~~-------------------~~~PVLGIN~ 676 (887)
+-+++.+.- ..+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 96 MDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 999886531 3579998875
No 136
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=68.22 E-value=11 Score=42.68 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=50.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 658 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 658 (887)
.++++||....-.. -...++.+.|.+..++++++-++... .+....+......-.+.-..++|+||.+|| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47889998755322 35677888875313555554332211 011000000000000011246899999999 9999
Q ss_pred HHHHhcc---CCCCcEEEEeC
Q 002733 659 HASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 659 ~Aar~~~---~~~~PVLGIN~ 676 (887)
-+++.++ ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 8887664 34678888876
No 137
>PRK03202 6-phosphofructokinase; Provisional
Probab=67.92 E-value=4.9 Score=45.41 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=38.7
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~l 697 (887)
.+.|.+|++|||||+-.|.++. ...+||+||.. | ++||-|..+ .+.+.+.++
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~--~~~~~i~~l 153 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALN--TAVEAIDRL 153 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHH--HHHHHHHHH
Confidence 4689999999999998887765 45899999954 3 788887643 344455544
No 138
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=67.77 E-value=2.2 Score=47.25 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=36.6
Q ss_pred CCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~l 697 (887)
.+.|.+|++|||||+-.|..+.....+||+||-. | ++||-|..+ .+.+.++++
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~--~~~~~i~~i 153 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVN--YIAEAIDNI 153 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHH--HHHHHHHHH
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhH--HHHHHHHHH
Confidence 4789999999999987776655345689999954 3 678777533 344444444
No 139
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=67.59 E-value=6.5 Score=45.44 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=49.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||.-++-.....+.++.+.|.. .++++.+-.++.- .|....+. ...+. -..++|.||.||| |..
T Consensus 29 ~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~p----~P~~~~v~----~~~~~~~~~~~D~iIalGG-GS~ 98 (377)
T COG1454 29 AKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVEP----EPTIETVE----AGAEVAREFGPDTIIALGG-GSV 98 (377)
T ss_pred CCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCCC----CCCHHHHH----HHHHHHHhcCCCEEEEeCC-ccH
Confidence 479999999986666788899999964 5677665444321 11110000 00011 1357899999999 999
Q ss_pred HHHHHhcc
Q 002733 658 LHASNLFR 665 (887)
Q Consensus 658 L~Aar~~~ 665 (887)
+-+++...
T Consensus 99 ~D~AK~i~ 106 (377)
T COG1454 99 IDAAKAIA 106 (377)
T ss_pred HHHHHHHH
Confidence 99888653
No 140
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=67.50 E-value=7.8 Score=44.56 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=51.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||.-..-.....+.++.+.|.+ .++.+.+-.++.. .|....+.. -.+. -..++|+||.+|| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~~----np~~~~v~~----~~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQP----NPTTENVAA----GLKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHH----HHHHHHHcCCCEEEEeCC-chH
Confidence 379999986543333456778888854 4666544222210 011000000 0000 1257999999999 999
Q ss_pred HHHHHhcc-------------------CCCCcEEEEeC
Q 002733 658 LHASNLFR-------------------GAVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~-------------------~~~~PVLGIN~ 676 (887)
+-+++.+. ...+|++.|.+
T Consensus 101 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPT 138 (383)
T PRK09860 101 HDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINT 138 (383)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeC
Confidence 99888764 13468888875
No 141
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=67.10 E-value=11 Score=34.14 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=20.5
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv~ 264 (887)
..+.+|+++|..|. |+..++..+ ..+|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 887765554 445653
No 142
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=66.73 E-value=8.4 Score=44.05 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=53.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTlL 658 (887)
++++||....-.......++.+.|.+ .++++.+-.++.. .+....+... .... ..++|+||.||| |+.+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVKP----NPTITNVKDG----LAVFKKEGCDFIISIGG-GSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 68999986543223456778888854 4666544322210 0110000000 0011 247899999999 9999
Q ss_pred HHHHhcc-------------------CCCCcEEEEeC--CCCccCC
Q 002733 659 HASNLFR-------------------GAVPPVISFNL--GSLGFLT 683 (887)
Q Consensus 659 ~Aar~~~-------------------~~~~PVLGIN~--G~LGFLt 683 (887)
-+++.+. ...+|++.|-+ |+=+..+
T Consensus 99 D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t 144 (377)
T cd08176 99 DCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVT 144 (377)
T ss_pred HHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccC
Confidence 9988653 23578988875 5433333
No 143
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=66.69 E-value=20 Score=32.26 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=18.4
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv 263 (887)
..+.||+|||..|. |+-.++. .+..+|.
T Consensus 59 ~~~~~ivv~c~~g~-~s~~~~~-~l~~~G~ 86 (103)
T cd01447 59 AEDKPFVFYCASGW-RSALAGK-TLQDMGL 86 (103)
T ss_pred CCCCeEEEEcCCCC-cHHHHHH-HHHHcCh
Confidence 34679999999986 7654443 3344564
No 144
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=66.56 E-value=11 Score=39.95 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH--
Q 002733 581 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 658 (887)
Q Consensus 581 ~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL-- 658 (887)
+|+++-... .....+.+||.+ .|+.+.+-+.....+ .+..++...+|.||..||.|..-
T Consensus 2 ~ilv~d~~~----~~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYD----SFVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCC----cHHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 456665543 223457788864 466655433211000 00112234689999999998653
Q ss_pred ----HHHHhccCCCCcEEEEeCCC
Q 002733 659 ----HASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 659 ----~Aar~~~~~~~PVLGIN~G~ 678 (887)
...+.+....+|||||-+|.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCH
Confidence 33444445679999999985
No 145
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=66.27 E-value=20 Score=40.92 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.9
Q ss_pred CCCcEEEeCc-cCCChHHHHHHHHHHHcCC
Q 002733 235 SKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 235 ~~~PVLVHC~-aGKDRTG~lvALll~~lGv 263 (887)
.+.+|++||. .|. |++.++.++.. +|.
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~~-~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLKE-AGI 114 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 5679999995 566 99988766553 465
No 146
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=65.65 E-value=4.5 Score=45.97 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=39.0
Q ss_pred CCccEEEEEcCCchHHHHHHhccC-----CCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFRG-----AVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~-----~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~ll 698 (887)
.+.|.+|++|||||+-.|..+... .++||+||-. | ++||-|..+ .+.+++.++.
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~--~~~~~i~~l~ 159 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK--TIVEAIDRIR 159 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH--HHHHHHHHHH
Confidence 468999999999999888775532 3799999954 2 688877633 3445555554
No 147
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=64.48 E-value=13 Score=38.34 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=25.8
Q ss_pred CccEEEEEcCCchHHH------HHHhccCCCCcEEEEeCCC
Q 002733 644 RVDFVACLGGDGVILH------ASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~------Aar~~~~~~~PVLGIN~G~ 678 (887)
.+|.||..||-|..-. ..+.+ ...+|||||-+|.
T Consensus 43 ~~d~iilsgGpg~p~~~~~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 43 LPLLIVISPGPCTPNEAGISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred CCCEEEEcCCCCChhhcchhHHHHHHh-ccCCCEEEECHHH
Confidence 4688999999988633 44444 3578999999885
No 148
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=62.53 E-value=7.2 Score=47.09 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 676 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~ 676 (887)
-+.|.+|++|||||+-.|+.+.. +..++|+||-.
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPk 198 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPK 198 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 36899999999999988877653 45699999953
No 149
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=62.27 E-value=18 Score=32.94 Aligned_cols=26 Identities=8% Similarity=-0.092 Sum_probs=19.2
Q ss_pred CCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002733 236 KKPLYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 236 ~~PVLVHC~aGKDRTG~lvALll~~lGv 263 (887)
+.+|+++|..|. |+..++..+ ..+|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~~L-~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAAFL-VKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHHHH-HHcCC
Confidence 679999999998 877665544 44564
No 150
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=62.26 E-value=12 Score=42.46 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=50.1
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
++++||.-+.- .......++.+.|.+ .++++.+-.++.. .+....+... ... ...++|+||.||| |+.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVEE----NPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 78999987664 333445667777753 4565543222210 0110000000 000 1246899999999 999
Q ss_pred HHHHHhcc------------------CCCCcEEEEeC
Q 002733 658 LHASNLFR------------------GAVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~------------------~~~~PVLGIN~ 676 (887)
+-+++.+. ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 96 LDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred HHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 99998542 23579998875
No 151
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=61.76 E-value=14 Score=42.19 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=43.6
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
++++||.-... .......++.+.|.+ .++++.+-..+.. .+....+... ... ...++|+||.||| |..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IiavGG-GS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVEP----NPTTTTVMEG----AALAREEGCDFVVGLGG-GSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCccC----CCCHHHHHHH----HHHHHHcCCCEEEEeCC-ccH
Confidence 78999997654 334566788888864 4666654222210 0110000000 000 1247899999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 96 iD~aK~i 102 (380)
T cd08185 96 MDTAKAI 102 (380)
T ss_pred HHHHHHH
Confidence 9888765
No 152
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=61.72 E-value=7.6 Score=47.14 Aligned_cols=52 Identities=27% Similarity=0.299 Sum_probs=36.5
Q ss_pred CccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C-----CCccCCCCCcccHHHHHHHH
Q 002733 644 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~-------G-----~LGFLt~~~~ee~~~~L~~l 697 (887)
+.|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|... -+.+.+.++
T Consensus 190 ~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k--~~a~~I~ni 258 (568)
T PLN02251 190 DLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACK--IYSEMIGNV 258 (568)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHH--HHHHHHHHH
Confidence 6899999999999999877653 34589999954 2 567776533 233444444
No 153
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=61.29 E-value=13 Score=44.91 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcC
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 262 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lG 262 (887)
..+.+|||||.-|.|||..+++|...++.
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 44579999999999999999999876443
No 154
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=60.97 E-value=8 Score=46.87 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=27.2
Q ss_pred CccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEe
Q 002733 644 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 675 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 675 (887)
+.|.+|++|||||+-.|..+.. +..+||+||-
T Consensus 164 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIP 200 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVP 200 (555)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEe
Confidence 6899999999999998877653 3589999994
No 155
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=60.90 E-value=35 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=19.2
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCCC
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 264 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv~ 264 (887)
..+.+|+++|..|. |+-.++..++. +|..
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~~-~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLRE-LGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHHH-cCCC
Confidence 45679999998777 77555544443 4543
No 156
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=60.11 E-value=9.6 Score=43.95 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=42.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||..+.-.......++.+.|.+ .|+++.+-..+.. .+....+... .+. ...++|+||.||| |..
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 90 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVEP----DPSLETVRKG----LELMNSFKPDTIIALGG-GSP 90 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999985432222356678888864 4676654332210 1110000000 001 1346899999999 999
Q ss_pred HHHHHhcc
Q 002733 658 LHASNLFR 665 (887)
Q Consensus 658 L~Aar~~~ 665 (887)
+-+++.+.
T Consensus 91 iD~AK~iA 98 (398)
T cd08178 91 MDAAKIMW 98 (398)
T ss_pred HHHHHHHH
Confidence 88887653
No 157
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=59.90 E-value=13 Score=42.67 Aligned_cols=75 Identities=13% Similarity=0.210 Sum_probs=41.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTlL 658 (887)
++++||.-..-.......++...|.+ .++++.+-.++.. .+....+.. -.... ..++|+||.||| |..+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVKP----NPTIEVVKE----GVEVFKASGADYLIAIGG-GSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCCC----CcCHHHHHH----HHHHHHhcCCCEEEEeCC-hHHH
Confidence 78999987543223356778888854 4565544322210 111100000 00011 247899999999 9999
Q ss_pred HHHHhc
Q 002733 659 HASNLF 664 (887)
Q Consensus 659 ~Aar~~ 664 (887)
-+++.+
T Consensus 101 D~aK~i 106 (382)
T PRK10624 101 DTCKAI 106 (382)
T ss_pred HHHHHH
Confidence 998753
No 158
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=59.56 E-value=17 Score=41.15 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=55.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
++++||.-.... .....++.+.|.+ .++++.+-..+. ..+....+.... ..-...++|+||.+|| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~~---~~~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYG----GESTYENVERLK---KNPAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecC----CCCCHHHHHHHH---HHHhhcCCCEEEEeCC-cHHHH
Confidence 789999765432 2346677777753 466554211110 001000000000 0001347899999999 99999
Q ss_pred HHHhccC-CCCcEEEEeC--CCCccCCCCC
Q 002733 660 ASNLFRG-AVPPVISFNL--GSLGFLTSHP 686 (887)
Q Consensus 660 Aar~~~~-~~~PVLGIN~--G~LGFLt~~~ 686 (887)
+++.+.. ..+|++-|.+ |+=+..+.+.
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~a 122 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAVS 122 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccceE
Confidence 9998753 4789999976 6666666543
No 159
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=59.33 E-value=8.8 Score=46.99 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.7
Q ss_pred CccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEe
Q 002733 644 RVDFVACLGGDGVILHASNLFR-----GAVPPVISFN 675 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN 675 (887)
+.|.+|++|||||+-.|+.+.. +..++|+||-
T Consensus 173 ~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 173 KLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 6899999999999998877653 3479999993
No 160
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=59.05 E-value=14 Score=42.20 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=42.3
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
++++||.-.+. .......++.+.|.+ .++++.+-.++.. .+....+... ... ...++|+||.+|| |..
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP----DPSVETVLKG----AEAMREFEPDWIIALGG-GSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 68888875542 333456778888853 4666654322210 0110000000 000 1247899999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 94 iD~AK~i 100 (375)
T cd08179 94 IDAAKAM 100 (375)
T ss_pred HHHHHHH
Confidence 9888875
No 161
>PRK06186 hypothetical protein; Validated
Probab=58.51 E-value=24 Score=38.30 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=30.6
Q ss_pred cCCccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCC
Q 002733 642 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 677 (887)
Q Consensus 642 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGIN~G 677 (887)
.+.+|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 457899999999775 577888888889999999988
No 162
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=58.48 E-value=21 Score=40.56 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 656 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~--ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGT 656 (887)
.++++||.-..-.. ....++.+.|.+ .++++. +-++... .+....+......-.+.-..+.|+||.+|| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e~----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGEQ----YKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899998655422 356778888854 355433 2121100 000000000000000001134699999999 99
Q ss_pred HHHHHHhcc---CCCCcEEEEeC
Q 002733 657 ILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 657 lL~Aar~~~---~~~~PVLGIN~ 676 (887)
++-+++.++ ..++|++-|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 999998764 45789988876
No 163
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=58.37 E-value=18 Score=40.92 Aligned_cols=86 Identities=19% Similarity=0.256 Sum_probs=49.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE--cCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV--EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~v--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl 657 (887)
++++||..+.-.... ..++.+.|.+ .++++.+ ..... ..+....+... .+.+.+++|+||.||| |..
T Consensus 24 ~~~livtd~~~~~~~-~~~v~~~l~~-~~i~~~~~~~~~~~----~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~ 92 (348)
T cd08175 24 KKALIVADENTYAAA-GKKVEALLKR-AGVVVLLIVLPAGD----LIADEKAVGRV----LKELERDTDLIIAVGS-GTI 92 (348)
T ss_pred CcEEEEECCcHHHHH-HHHHHHHHHH-CCCeeEEeecCCCc----ccCCHHHHHHH----HHHhhccCCEEEEECC-cHH
Confidence 688999865432222 4778888854 4564432 11110 00110000000 0111127899999999 999
Q ss_pred HHHHHhcc-CCCCcEEEEeC
Q 002733 658 LHASNLFR-GAVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~-~~~~PVLGIN~ 676 (887)
+-+++.+. ...+|++-|.+
T Consensus 93 ~D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 93 NDITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHHhcCCCEEEecC
Confidence 99999874 34689999975
No 164
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=58.28 E-value=15 Score=40.91 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=27.6
Q ss_pred CCccEEEEEcCCchHHHHHHhccC---CCCcEEEEeC
Q 002733 643 ERVDFVACLGGDGVILHASNLFRG---AVPPVISFNL 676 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~---~~~PVLGIN~ 676 (887)
.++|+||.+|| |+++-+++.+.. ..+|++-|.+
T Consensus 77 ~~~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 77 AEVDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred cCcCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeC
Confidence 46899999999 999999987643 2789999975
No 165
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=58.11 E-value=9.5 Score=46.19 Aligned_cols=43 Identities=30% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC-------C-----CCccCCCC
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSH 685 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~-------G-----~LGFLt~~ 685 (887)
-+.|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|..
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~ 224 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTAT 224 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHH
Confidence 36899999999999998877553 34589999953 3 56776653
No 166
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=58.09 E-value=12 Score=42.58 Aligned_cols=96 Identities=21% Similarity=0.297 Sum_probs=53.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||.-..-.......++.+.|.+ .++++.+-..+.. .+....+... .... ..++|+||.+|| |++
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 92 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGVEP----NPTLSNVDAA----VAAYREEGCDGVIAVGG-GSV 92 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986553223455678888753 4565553222110 0110000000 0011 246899999999 999
Q ss_pred HHHHHhccC-------------------CCCcEEEEeC--CCCccCCC
Q 002733 658 LHASNLFRG-------------------AVPPVISFNL--GSLGFLTS 684 (887)
Q Consensus 658 L~Aar~~~~-------------------~~~PVLGIN~--G~LGFLt~ 684 (887)
+-+++.+.. ..+|++.|.+ |+=+..++
T Consensus 93 ~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t~ 140 (370)
T cd08551 93 LDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVTP 140 (370)
T ss_pred HHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcCC
Confidence 999887631 1579998876 44334443
No 167
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=58.05 E-value=21 Score=33.27 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=43.3
Q ss_pred CCCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHH-HHHHHHhcCCCCc
Q 002733 162 GQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKKP 238 (887)
Q Consensus 162 gqpt~edLa~L~elG--IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~-~flelI~d~~~~P 238 (887)
..++++++..+.+.+ --.|||+|+.. + +. . -...| .+++|.. .+. .....+ ..+.|
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~--~---ghIpg--A~~ip~~--------~l~~~~~~~i--~~~~~ 66 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA--R---GHVPG--AINLPHR--------EICENATAKL--DKEKL 66 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh--c---CCCCC--CEeCCHH--------HhhhHhhhcC--CCCCe
Confidence 367888887776554 24799999875 1 11 0 01112 2334432 111 112223 35789
Q ss_pred EEEeCccCCC-hHHHHHHHHHHHcCC
Q 002733 239 LYLHSKEGVW-RTYAMVSRWRQYMAR 263 (887)
Q Consensus 239 VLVHC~aGKD-RTG~lvALll~~lGv 263 (887)
|+++|..|.. |+..++..+ ..+|.
T Consensus 67 vvvyc~~g~~~~s~~~a~~l-~~~G~ 91 (110)
T cd01521 67 FVVYCDGPGCNGATKAALKL-AELGF 91 (110)
T ss_pred EEEEECCCCCchHHHHHHHH-HHcCC
Confidence 9999998863 444444444 34565
No 168
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.02 E-value=22 Score=40.07 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=51.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||....-.. ....++.+.|.+ .++++.+.. +. ..+....+... .+.. ..++|+||.+|| |+.
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFEV-FG----GECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEEE-eC----CcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 37899998544322 456778888853 466653221 10 01110000000 0011 247899999999 999
Q ss_pred HHHHHhccC-CCCcEEEEeC
Q 002733 658 LHASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~~-~~~PVLGIN~ 676 (887)
+-+++.+.- ..+|++.|.+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 999998743 4689999975
No 169
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=57.97 E-value=8.6 Score=50.39 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCccEEEEEcCCchHHHHHHhccC----------CCCcEEEEeC-------C-----CCccCCCCC
Q 002733 643 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFNL-------G-----SLGFLTSHP 686 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~----------~~~PVLGIN~-------G-----~LGFLt~~~ 686 (887)
.+.|.+|+||||||+-.|+.+... ..+||+||-. | ++||-|..+
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 368999999999999999886543 3699999954 2 577777643
No 170
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=57.93 E-value=9.9 Score=43.25 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=43.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||.-+.-.....+.++.+.|.+ .++++.+-..+.. .+....+.. -.... ..++|+||.||| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVPP----NPTEAAVEA----GLAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 378999987654333356778888854 4666543222110 111000000 00011 257899999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 9888765
No 171
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=57.90 E-value=23 Score=39.85 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEE---EEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNI---LVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V---~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
.++++||.-..-... ...++.+.|.+ .++++ .++.... .+....+......-.+.-..+.|+||.+|| |
T Consensus 20 ~~~~livtd~~~~~~-~~~~v~~~L~~-~g~~~~~~~~~~~e~-----~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-G 91 (344)
T TIGR01357 20 PSKLVIITDETVADL-YADKLLEALQA-LGYNVLKLTVPDGEE-----SKSLETVQRLYDQLLEAGLDRSSTIIALGG-G 91 (344)
T ss_pred CCeEEEEECCchHHH-HHHHHHHHHHh-cCCceeEEEeCCCCC-----CCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-h
Confidence 378999986543322 56778888854 35543 2221100 000000000000000001134699999999 9
Q ss_pred hHHHHHHhcc---CCCCcEEEEeC
Q 002733 656 VILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 656 TlL~Aar~~~---~~~~PVLGIN~ 676 (887)
+++-+++.++ ...+|++-|.+
T Consensus 92 sv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 92 VVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHHHHccCCCEEEecC
Confidence 9999888764 45688888876
No 172
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=57.40 E-value=14 Score=42.23 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=42.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||....-.......++...|.+ .++++.+-.++.. .+....+... .+. ...++|+||.||| |.+
T Consensus 29 ~~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IiaiGG-GSv 98 (379)
T TIGR02638 29 FKKALVVTDKDLIKFGVADKVTDLLDE-AGIAYELFDEVKP----NPTITVVKAG----VAAFKASGADYLIAIGG-GSP 98 (379)
T ss_pred CCEEEEEcCcchhhccchHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 379999987653222356678888753 4666554332210 1110000000 000 1247899999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 99 iD~aKai 105 (379)
T TIGR02638 99 IDTAKAI 105 (379)
T ss_pred HHHHHHH
Confidence 9888643
No 173
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=57.35 E-value=42 Score=31.37 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=40.2
Q ss_pred CCHhhHHHHHHcC------CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC
Q 002733 164 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 237 (887)
Q Consensus 164 pt~edLa~L~elG------IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~ 237 (887)
++++++..+.+.+ =-.|||.|+.+ +. . ....| -+++|+.... +.+.+.++.+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~--~---ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE--G---GHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC--C---CcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 5777887776665 23689999752 11 0 01112 3556664211 1122222222113356
Q ss_pred cEEEeCccCCChHHHHHHHH
Q 002733 238 PLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 238 PVLVHC~aGKDRTG~lvALl 257 (887)
+|++||..|-.|+-.++..+
T Consensus 68 ~iv~~C~~~g~rs~~a~~~l 87 (113)
T cd01443 68 LAIFYCGSSQGRGPRAARWF 87 (113)
T ss_pred EEEEECCCCCcccHHHHHHH
Confidence 89999997533765554333
No 174
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=57.32 E-value=27 Score=39.36 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=49.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
++++||.-..-.. ....++.+.|.++..+.+++.++- .+.+.. .. +.+ ..++|+||.+|| |++
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~---------~~----~~~~~~~~d~iIaiGG-Gs~ 90 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLEDEGEVDVVIVEDATYEEVEK---------VE----SSARDIGADFVIGVGG-GRV 90 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH---------HH----HHhhhcCCCEEEEeCC-chH
Confidence 6889988655322 345677777754322334443321 111100 00 011 136899999999 999
Q ss_pred HHHHHhcc-CCCCcEEEEeC
Q 002733 658 LHASNLFR-GAVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~-~~~~PVLGIN~ 676 (887)
+-+++.+. ...+|++-|.+
T Consensus 91 ~D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 91 IDVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHHhcCCCEEEecC
Confidence 99999775 34689999875
No 175
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=56.62 E-value=15 Score=42.06 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=43.3
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCch
Q 002733 579 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 656 (887)
Q Consensus 579 p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGT 656 (887)
.++++||.-... .......++.+.|.+ .++++.+-.++.. .+....+... .+.+ ..++|+||.+|| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVTP----NPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 378999987653 234456778888854 4666554332210 1111000000 0011 246899999999 99
Q ss_pred HHHHHHhc
Q 002733 657 ILHASNLF 664 (887)
Q Consensus 657 lL~Aar~~ 664 (887)
.+-+++.+
T Consensus 96 ~iD~aK~i 103 (383)
T cd08186 96 PIDSAKSA 103 (383)
T ss_pred HHHHHHHH
Confidence 99888765
No 176
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=56.54 E-value=9.7 Score=47.73 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=38.1
Q ss_pred CCccEEEEEcCCchHHHHHHhcc------CCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~l 697 (887)
.++|.+|++|||||+-.|..+.. ...+||+||-. | ++||-|..+ .+.++++++
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~--~~~~~id~i 545 (745)
T TIGR02478 477 HKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALN--EITEYCDNI 545 (745)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHH--HHHHHHHHH
Confidence 36899999999999988776653 24699999954 2 788887643 334445544
No 177
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=56.25 E-value=23 Score=40.09 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=48.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCC--eEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEK--MNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 656 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~--~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGT 656 (887)
.++++||.-.+-.. ....++.+.|.+. + +.+++-+.... .+....+......-.+.-..+.|+||.+|| |+
T Consensus 24 ~~~~livtd~~~~~-~~~~~l~~~L~~~-g~~~~~~~~~~~e~----~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 24 GSKILIVTDENVAP-LYLEKLKAALEAA-GFEVEVIVIPAGEA----SKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHhc-CCceEEEEeCCCCC----cCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 47899998655332 3557788887543 4 33333221100 000000000000000011234599999999 99
Q ss_pred HHHHHHhcc---CCCCcEEEEeC
Q 002733 657 ILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 657 lL~Aar~~~---~~~~PVLGIN~ 676 (887)
++-++..++ ..++|++-|.+
T Consensus 97 v~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHHhcCCCeEEcch
Confidence 999888764 45788888765
No 178
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=56.08 E-value=10 Score=47.53 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=39.2
Q ss_pred CCccEEEEEcCCchHHHHHHhcc------CCCCcEEEEeC-------C---CCccCCCCCcccHHHHHHHHH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~------~~~~PVLGIN~-------G---~LGFLt~~~~ee~~~~L~~ll 698 (887)
.++|.+|++|||||+-.+..+.. ...+|++||-. | ++||-|.++ .+-++++++.
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~id~i~ 546 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYCDRIK 546 (762)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHHHHHH
Confidence 36899999999999988766553 25799999954 3 688887643 3445555553
No 179
>PRK06490 glutamine amidotransferase; Provisional
Probab=56.03 E-value=25 Score=38.02 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=25.8
Q ss_pred CCccEEEEEcCCchH------H----HHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVI------L----HASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTl------L----~Aar~~~~~~~PVLGIN~G~ 678 (887)
+++|.+|+.||-++. + ...+.+....+|||||-+|+
T Consensus 51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 458999999998753 2 22333334678999999986
No 180
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.82 E-value=17 Score=41.69 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=50.7
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCch
Q 002733 579 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 656 (887)
Q Consensus 579 p~~VlIv~K~~~-~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGT 656 (887)
.++++||.-+.. .......++.+.|.+ .|+++.+-.++.. .+....+... ... ...++|+||.+|| |+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVEP----NPRLETVREG----IELCKEEKVDFILAVGG-GS 97 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCccC----CCCHHHHHHH----HHHHHHcCCCEEEEeCC-hH
Confidence 378999976543 233445677777753 4676654222210 0110000000 000 1247899999999 99
Q ss_pred HHHHHHhccC-------------------CCCcEEEEeC
Q 002733 657 ILHASNLFRG-------------------AVPPVISFNL 676 (887)
Q Consensus 657 lL~Aar~~~~-------------------~~~PVLGIN~ 676 (887)
.+-+++.+.- ..+|++.|.+
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 9999886532 3579999986
No 181
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=55.67 E-value=46 Score=36.51 Aligned_cols=97 Identities=13% Similarity=0.010 Sum_probs=46.8
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEEecCC---------CCCCCHHHHHHHHHHHhc
Q 002733 164 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEV---------RTAPTMEQVEKFASLVSN 233 (887)
Q Consensus 164 pt~edLa~L~elGIKTVIDLR~e~~Ee~~~~-~~e~~~~~~~GI~yihIPV~d---------~~~ps~e~v~~flelI~d 233 (887)
.+.+++....+.+=-.|||.|+......... ..+-..-...|. +++|+.. ...+..+.+.++++-+--
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4666766555443357999998531000000 001000112232 3344321 112345667666665533
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHHHcCC
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~~lGv 263 (887)
..+.||+++|..|. +....++..+.++|.
T Consensus 85 ~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~ 113 (281)
T PRK11493 85 NQDKHLVVYDEGNL-FSAPRAWWMLRTFGV 113 (281)
T ss_pred CCCCEEEEECCCCC-chHHHHHHHHHHhcC
Confidence 45779999998775 443333333343453
No 182
>PTZ00287 6-phosphofructokinase; Provisional
Probab=55.48 E-value=12 Score=49.64 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=36.2
Q ss_pred CccEEEEEcCCchHHHHHHhcc---CCCCc--EEEEeC-------C-----CCccCCCCCcccHHHHHHHH
Q 002733 644 RVDFVACLGGDGVILHASNLFR---GAVPP--VISFNL-------G-----SLGFLTSHPFEDYRQDLRQV 697 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~---~~~~P--VLGIN~-------G-----~LGFLt~~~~ee~~~~L~~l 697 (887)
+.|.+|+||||||+-.|+.+.. ..+.| |+||-. | ++||=|..+ -+-+++.++
T Consensus 928 ~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~--~~seaI~nL 996 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK--VYASLIGNV 996 (1419)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH--HHHHHHHHH
Confidence 6899999999999999877654 24566 999954 3 677766543 233444444
No 183
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=54.95 E-value=18 Score=34.71 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=32.0
Q ss_pred HHHHHHcCCcEEEEcCCCcc-cCcchh-hhhHHhhhcCCcEEEEEecC
Q 002733 169 LKWLMEKGYKTIVDIRAERV-KDNFYE-AAIDDAILSGKVELIKIPVE 214 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~-Ee~~~~-~~e~~~~~~~GI~yihIPV~ 214 (887)
++.|++.||+.|||.|.-.. ..+.+. ......+...||.|+|+|-.
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 46788899999999888641 112221 23345667789999999964
No 184
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=54.59 E-value=11 Score=38.46 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=26.0
Q ss_pred CCccEEEEEcCCchHH-----HHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL-----~Aar~~~~~~~PVLGIN~G~ 678 (887)
..+|.||+.||.|+.. ...+......+|||||-+|.
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhH
Confidence 4689999999999843 33333234568999999885
No 185
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=54.42 E-value=12 Score=43.45 Aligned_cols=77 Identities=17% Similarity=0.228 Sum_probs=43.9
Q ss_pred ccCCCEEEEEecCCh---hHHHHHHHHHHHHhcC-CCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEE
Q 002733 576 KTTPRTVLVLKKPGP---ALMEEAKEVASFLYHQ-EKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 651 (887)
Q Consensus 576 ~~~p~~VlIv~K~~~---~~~~~a~~l~~~L~~~-~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvL 651 (887)
..+||+++|+..|.. ......+.+..++... -...|+|.+..-..+.- .++...++ ...+|-+|++
T Consensus 155 ~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~---------~~ei~~~~-~~~yDGiv~V 224 (516)
T KOG1115|consen 155 VERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDV---------MAEIQNKE-LHTYDGIVAV 224 (516)
T ss_pred hcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhh---------hhhCCHhh-hhhcccEEEe
Confidence 447999999888753 3344555555554222 34567776654332211 01112223 2467999999
Q ss_pred cCCchHHHHHH
Q 002733 652 GGDGVILHASN 662 (887)
Q Consensus 652 GGDGTlL~Aar 662 (887)
||||-|=-..+
T Consensus 225 GGDG~FnEiL~ 235 (516)
T KOG1115|consen 225 GGDGFFNEILN 235 (516)
T ss_pred cCchhHHHHHh
Confidence 99998644433
No 186
>PRK05670 anthranilate synthase component II; Provisional
Probab=54.03 E-value=18 Score=37.26 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH------HHHHhccCCC
Q 002733 595 EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL------HASNLFRGAV 668 (887)
Q Consensus 595 ~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL------~Aar~~~~~~ 668 (887)
....+++||.+ .|+++.+-+...... ...+. .++|.||..||-|+.- ...+.+ ...
T Consensus 11 f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~ 72 (189)
T PRK05670 11 FTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAGISLELIREF-AGK 72 (189)
T ss_pred hHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcchHHHHHHHh-cCC
Confidence 35678888864 477766543311000 00111 1379999999999862 223333 246
Q ss_pred CcEEEEeCCC
Q 002733 669 PPVISFNLGS 678 (887)
Q Consensus 669 ~PVLGIN~G~ 678 (887)
+|||||-+|.
T Consensus 73 ~PvLGIClG~ 82 (189)
T PRK05670 73 VPILGVCLGH 82 (189)
T ss_pred CCEEEECHHH
Confidence 8999999885
No 187
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=53.55 E-value=44 Score=39.74 Aligned_cols=55 Identities=9% Similarity=0.173 Sum_probs=34.7
Q ss_pred cCCcEEEEEecCCCCCCCHH------HHHHHHHHHh-cCCCCcEEEeCccCCChHHHHHHHH
Q 002733 203 SGKVELIKIPVEVRTAPTME------QVEKFASLVS-NSSKKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 203 ~~GI~yihIPV~d~~~ps~e------~v~~flelI~-d~~~~PVLVHC~aGKDRTG~lvALl 257 (887)
.....++|+|+.....-+.. .+..|+.... ....++|||+|..|||..-.++..+
T Consensus 336 ~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaI 397 (451)
T PF04179_consen 336 PKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAI 397 (451)
T ss_pred CCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHH
Confidence 35678999999854444322 2333443322 2247899999999999876654443
No 188
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=53.44 E-value=26 Score=40.63 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=26.5
Q ss_pred CCccEEEEEcCCchHHHHHHhcc---CCCCcEEEEeC
Q 002733 643 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGIN~ 676 (887)
++.|+||.||| |+++-++..+. ..++|++-|.+
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45679999999 99999987763 34789888875
No 189
>PRK07053 glutamine amidotransferase; Provisional
Probab=53.39 E-value=36 Score=36.65 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=45.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch--
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV-- 656 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGT-- 656 (887)
.++|+||.+...+-.. .|.+||.+ .|.++-+-...... ....+ ..++|.+|+.||-..
T Consensus 2 m~~ilviqh~~~e~~g---~i~~~L~~-~g~~~~v~~~~~~~---------------~~~~~-~~~~d~lii~Ggp~~~~ 61 (234)
T PRK07053 2 MKTAVAIRHVAFEDLG---SFEQVLGA-RGYRVRYVDVGVDD---------------LETLD-ALEPDLLVVLGGPIGVY 61 (234)
T ss_pred CceEEEEECCCCCCCh---HHHHHHHH-CCCeEEEEecCCCc---------------cCCCC-ccCCCEEEECCCCCCCC
Confidence 4689999887654322 26677753 45554432110000 00112 236899999998542
Q ss_pred ----------HHHHHHhccCCCCcEEEEeCCC
Q 002733 657 ----------ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 657 ----------lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
++...+.+...++|||||-+|.
T Consensus 62 d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 62 DDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 2233444445678999999886
No 190
>PLN02834 3-dehydroquinate synthase
Probab=53.33 E-value=19 Score=42.38 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=47.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE----cCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCC
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV----EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 654 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~v----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGD 654 (887)
.++++||.-..-... ...++.+.|.+ .|+++.+ -++... .+....+......-.+.-.++.|+||.|||
T Consensus 100 g~rvlIVtD~~v~~~-~~~~v~~~L~~-~g~~~~v~~~v~~~gE~----~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG- 172 (433)
T PLN02834 100 GKRVLVVTNETVAPL-YLEKVVEALTA-KGPELTVESVILPDGEK----YKDMETLMKVFDKALESRLDRRCTFVALGG- 172 (433)
T ss_pred CCEEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEEEecCCcC----CCCHHHHHHHHHHHHhcCCCcCcEEEEECC-
Confidence 478999986553333 56778888854 3543322 111100 000000000000000000123469999999
Q ss_pred chHHHHHHhcc---CCCCcEEEEeCC
Q 002733 655 GVILHASNLFR---GAVPPVISFNLG 677 (887)
Q Consensus 655 GTlL~Aar~~~---~~~~PVLGIN~G 677 (887)
|+++-+++.++ ..++|++-|.+.
T Consensus 173 Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 173 GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 99999888542 457888877663
No 191
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=53.07 E-value=37 Score=38.92 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002733 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 242 (887)
Q Consensus 163 qpt~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVH 242 (887)
.++.+++..+.+.+ -.|||.|+.+ + |. . -...| -+++|. ..+.+.+..+....+.+|+++
T Consensus 4 ~is~~el~~~l~~~-~~ivDvR~~~-e---~~--~---ghIpg--Ai~ip~--------~~l~~~~~~~~~~~~~~Ivvy 63 (376)
T PRK08762 4 EISPAEARARAAQG-AVLIDVREAH-E---RA--S---GQAEG--ALRIPR--------GFLELRIETHLPDRDREIVLI 63 (376)
T ss_pred eeCHHHHHHHHhCC-CEEEECCCHH-H---Hh--C---CcCCC--CEECCH--------HHHHHHHhhhcCCCCCeEEEE
Confidence 35777887776667 4799999865 1 11 0 01112 234443 233333332212457899999
Q ss_pred CccCCChHHHHHHHHHHHcCC
Q 002733 243 SKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 243 C~aGKDRTG~lvALll~~lGv 263 (887)
|..|. |+..++..++ .+|.
T Consensus 64 C~~G~-rs~~aa~~L~-~~G~ 82 (376)
T PRK08762 64 CASGT-RSAHAAATLR-ELGY 82 (376)
T ss_pred cCCCc-HHHHHHHHHH-HcCC
Confidence 99987 8765554443 3443
No 192
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=52.73 E-value=23 Score=40.43 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||.-..-.......++.+.|.+ .++++.+-..+.. .+....+... .+. ...++|+||.||| |..
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GS~ 95 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEG-AGIEYAVYDGVPP----DPTIENVEAG----LALYRENGCDAILAVGG-GSV 95 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHh-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 379999986553222345677777754 4666554322210 1110000000 000 1247899999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 96 ~D~aK~i 102 (374)
T cd08189 96 IDCAKAI 102 (374)
T ss_pred HHHHHHH
Confidence 9988764
No 193
>PRK07411 hypothetical protein; Validated
Probab=52.64 E-value=21 Score=41.26 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=46.8
Q ss_pred CCCHhhHHHHHHcCC--cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002733 163 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 240 (887)
Q Consensus 163 qpt~edLa~L~elGI--KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVL 240 (887)
.++.+++..+.+.+- -.|||.|+.. | +. . ....| -+++|+...... ....++.++ ..+.||+
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~-E---~~--~---ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPN-E---YE--I---ARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHH-H---hc--c---CcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 568888887666553 3689999975 1 11 0 01122 345665421111 011222222 2467999
Q ss_pred EeCccCCChHHHHHHHHHHHcCC
Q 002733 241 LHSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 241 VHC~aGKDRTG~lvALll~~lGv 263 (887)
+||..|. |+..++..++ .+|.
T Consensus 347 vyC~~G~-RS~~aa~~L~-~~G~ 367 (390)
T PRK07411 347 AHCKMGG-RSAKALGILK-EAGI 367 (390)
T ss_pred EECCCCH-HHHHHHHHHH-HcCC
Confidence 9999998 9987665554 4565
No 194
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=52.21 E-value=25 Score=40.26 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTlL 658 (887)
++++||..+.-. .+.++...|.+ .++++.+..... .+....+... ... -..++|+||.||| |+.+
T Consensus 23 ~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~~~~-----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~~ 88 (374)
T cd08183 23 RRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVVVAG-----EPSVELVDAA----VAEARNAGCDVVIAIGG-GSVI 88 (374)
T ss_pred CcEEEEECCchH---HHHHHHHHHHH-cCCeEEEecCCC-----CcCHHHHHHH----HHHHHhcCCCEEEEecC-chHH
Confidence 789999876543 56778888854 466654422110 1110000000 001 1247899999999 9999
Q ss_pred HHHHhc
Q 002733 659 HASNLF 664 (887)
Q Consensus 659 ~Aar~~ 664 (887)
-+++.+
T Consensus 89 D~aK~i 94 (374)
T cd08183 89 DAGKAI 94 (374)
T ss_pred HHHHHH
Confidence 888764
No 195
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=52.19 E-value=38 Score=40.94 Aligned_cols=67 Identities=28% Similarity=0.356 Sum_probs=34.1
Q ss_pred EEEEEcCCchH---HHHHHhccCC-CCcE--EEEeCC-----CCccCCCCCcccHHHHHHHHHccCCCCCceeeEEeeEE
Q 002733 647 FVACLGGDGVI---LHASNLFRGA-VPPV--ISFNLG-----SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRL 715 (887)
Q Consensus 647 lVIvLGGDGTl---L~Aar~~~~~-~~PV--LGIN~G-----~LGFLt~~~~ee~~~~L~~ll~G~~~~~~~~i~~R~rL 715 (887)
-|++-|||||+ |.+.-.+.-. .+|| |....| +||.=-.+.-+-+-+.|..+.+|. ..-..|-+|
T Consensus 419 RILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gt-----vVqLDRW~l 493 (1004)
T KOG0782|consen 419 RILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGT-----VVQLDRWRL 493 (1004)
T ss_pred EEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCc-----EEeeeeeee
Confidence 36688999996 5555555433 3444 333333 232222222333445667777776 122346666
Q ss_pred EEE
Q 002733 716 CCE 718 (887)
Q Consensus 716 ~~~ 718 (887)
.++
T Consensus 494 hvE 496 (1004)
T KOG0782|consen 494 HVE 496 (1004)
T ss_pred ccc
Confidence 554
No 196
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=52.14 E-value=17 Score=40.91 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=49.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||.-..-... ...++.+.|.+. ++.++-+-.. .+....+.. -.+.. ..++|+||.||| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~~-~~~~~~~~~~------~p~~~~v~~----~~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGDR-VAGTFDGAVM------HTPVEVTEA----AVAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhccC-CcEEeCCCCC------CCCHHHHHH----HHHHHHhcCCCEEEEeCC-cHH
Confidence 368999986543333 567788888543 4443311000 010000000 00011 247899999999 999
Q ss_pred HHHHHhccC-CCCcEEEEeC
Q 002733 658 LHASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~~-~~~PVLGIN~ 676 (887)
+-+++.+.. ..+|++-|.+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999987743 3689999875
No 197
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=52.06 E-value=49 Score=30.84 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002733 164 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 241 (887)
Q Consensus 164 pt~edLa~L~elG--IKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLV 241 (887)
++++++..+...+ --.|||+|+.+ +. .. ...| .+++|.... ...+.++.+......+.+|+|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-----~~--~~---hi~g--A~~ip~~~l----~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-----YA--GG---HIKG--SWHYPSTRF----KAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-----cC--CC---cCCC--CEecCHHHH----hhCHHHHHHHHhcCCCCeEEE
Confidence 5677887776554 23589999852 11 00 0112 234554311 112223322221134579999
Q ss_pred eCccCCChHHHHHHHH
Q 002733 242 HSKEGVWRTYAMVSRW 257 (887)
Q Consensus 242 HC~aGKDRTG~lvALl 257 (887)
||..+..|....+..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9984433777765554
No 198
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=51.94 E-value=23 Score=39.94 Aligned_cols=100 Identities=19% Similarity=0.125 Sum_probs=53.4
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC--CCCC------CHHHH-------------
Q 002733 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV--RTAP------TMEQV------------- 224 (887)
Q Consensus 166 ~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d--~~~p------s~e~v------------- 224 (887)
..+++.++++|.+||||..+... ...+...++..+..|++.|.--=.- ...| +.+++
T Consensus 41 ~~El~~~k~~Gg~tiVd~T~~g~--GRd~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~Gid 118 (308)
T PF02126_consen 41 VAELKEFKAAGGRTIVDATPIGL--GRDVEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGID 118 (308)
T ss_dssp HHHHHHHHHTTEEEEEE--SGGG--TB-HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-ST
T ss_pred HHHHHHHHHcCCCEEEecCCccc--CcCHHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCC
Confidence 34678889999999999988751 1122345566677788776422100 0001 01111
Q ss_pred ----------------------HHHHH---HHhcCCCCcEEEeCccCCChHHHHHHHHHHHcCCCHHHH
Q 002733 225 ----------------------EKFAS---LVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 268 (887)
Q Consensus 225 ----------------------~~fle---lI~d~~~~PVLVHC~aGKDRTG~lvALll~~lGv~~eeI 268 (887)
++.++ .......-||.+||..|. |.|.=.+-++.-.|++++.+
T Consensus 119 gT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rv 186 (308)
T PF02126_consen 119 GTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRV 186 (308)
T ss_dssp TSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGE
T ss_pred CCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHe
Confidence 11111 111234679999999998 77885555555578888776
No 199
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=51.56 E-value=24 Score=40.19 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++++||.-..-. ....+.+.|.+ .++++.+-..+.. .+.+..+... .+.. ..++|+||.+|| |+.
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQP----NPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 3789999866543 33456666653 4565554322211 1111000000 0011 246899999999 999
Q ss_pred HHHHHhcc
Q 002733 658 LHASNLFR 665 (887)
Q Consensus 658 L~Aar~~~ 665 (887)
+-+++.+.
T Consensus 90 ~D~aK~ia 97 (367)
T cd08182 90 LDTAKALA 97 (367)
T ss_pred HHHHHHHH
Confidence 99888653
No 200
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=51.20 E-value=22 Score=42.31 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=39.0
Q ss_pred cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHH
Q 002733 178 KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 178 KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALl 257 (887)
..+||.|+++ | +. .......+++.+|+|+. .+...++-+ ..++|++++|.+|. |+..++..+
T Consensus 408 ~~lIDVR~~~-E---~~---~~hI~g~~~~a~niP~~--------~l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~~L 469 (482)
T PRK01269 408 DVIIDIRSPD-E---QE---DKPLKLEGVEVKSLPFY--------KLSTQFGDL--DQSKTYLLYCDRGV-MSRLQALYL 469 (482)
T ss_pred CEEEECCCHH-H---Hh---cCCCCCCCceEEECCHH--------HHHHHHhhc--CCCCeEEEECCCCH-HHHHHHHHH
Confidence 3689999976 2 11 00111113667777764 222222223 34679999999999 988877666
Q ss_pred HHHcCC
Q 002733 258 RQYMAR 263 (887)
Q Consensus 258 l~~lGv 263 (887)
.. +|.
T Consensus 470 ~~-~G~ 474 (482)
T PRK01269 470 RE-QGF 474 (482)
T ss_pred HH-cCC
Confidence 54 453
No 201
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=50.63 E-value=34 Score=39.61 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=45.7
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002733 163 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 241 (887)
Q Consensus 163 qpt~edLa~L~elGI-KTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLV 241 (887)
.++++++..+.+.+- -.|||+|+.. + +. . ....| -+++|+.... ..+ -++.+ ..++|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~--~---ghIpG--Ainip~~~l~--~~~----~~~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD--I---VHIPG--AQLIPKSEIL--SGE----ALAKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh--c---CCCCC--CEEcChHHhc--chh----HHhhC--CCCCcEEE
Confidence 578888887776653 3699999975 1 11 0 11122 3456654211 111 11223 35689999
Q ss_pred eCccCCChHHHHHHHHHHHcCC
Q 002733 242 HSKEGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 242 HC~aGKDRTG~lvALll~~lGv 263 (887)
+|..|. |+..++..++ .+|.
T Consensus 349 yC~~G~-rS~~aa~~L~-~~G~ 368 (392)
T PRK07878 349 YCKTGV-RSAEALAALK-KAGF 368 (392)
T ss_pred EcCCCh-HHHHHHHHHH-HcCC
Confidence 999998 8766555444 3454
No 202
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=49.70 E-value=27 Score=39.28 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=46.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||.-+.-.......++.+.|.+. +++.+-.++. ..+....+... .+. ...++|+||.+|| |..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~--~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS--IEVEIFSDVV----PDPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc--CcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 3788998854322222456778887532 4443322211 00110000000 000 1246899999999 999
Q ss_pred HHHHHhc----c----CCCCcEEEEeC
Q 002733 658 LHASNLF----R----GAVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~----~----~~~~PVLGIN~ 676 (887)
+-+++.+ . ...+|++.|.+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 9888843 1 12479999875
No 203
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=49.49 E-value=5.5 Score=47.44 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCcEEEeCccCCChHHHHHHHH
Q 002733 235 SKKPLYLHSKEGVWRTYAMVSRW 257 (887)
Q Consensus 235 ~~~PVLVHC~aGKDRTG~lvALl 257 (887)
.+....+.|++||||||++-+-.
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 34567789999999999975544
No 204
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=49.06 E-value=19 Score=41.74 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++|+....-.......++.+.|.+ .|+++.+...+.. .|....+... ... -..++|+||.||| |..
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~P~~~~v~~~----~~~~r~~~~D~IiavGG-GS~ 118 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPVG----EPCITDVCAA----VAQLRESGCDGVIAFGG-GSV 118 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-hHH
Confidence 378888876543333446778888854 5777654332210 1110000000 000 1257999999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 119 iD~AKai 125 (395)
T PRK15454 119 LDAAKAV 125 (395)
T ss_pred HHHHHHH
Confidence 9988764
No 205
>CHL00101 trpG anthranilate synthase component 2
Probab=48.76 E-value=16 Score=37.83 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.5
Q ss_pred CccEEEEEcCCchHHH-----HHHhccCCCCcEEEEeCCC
Q 002733 644 RVDFVACLGGDGVILH-----ASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~-----Aar~~~~~~~PVLGIN~G~ 678 (887)
.+|.||+.||.|..-. .........+|||||-+|.
T Consensus 43 ~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 43 NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred CCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhH
Confidence 5799999999998633 2222224579999999985
No 206
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=48.63 E-value=26 Score=40.34 Aligned_cols=88 Identities=16% Similarity=0.098 Sum_probs=49.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
++++||....-.......++.+.|.+ .++++.+-..+.. .+.. ... ...-..-...++|+||.||| |.++-
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~--~~v-~~~~~~~~~~~~D~IIaiGG-GS~iD 93 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPR--SEL-CDAASAAARAGPDVIIGLGG-GSCID 93 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCH--HHH-HHHHHHHHhcCCCEEEEeCC-chHHH
Confidence 78999986442223456677777754 4666544332210 0000 000 00000011257899999999 99999
Q ss_pred HHHhccC-------------------CCCcEEEEeC
Q 002733 660 ASNLFRG-------------------AVPPVISFNL 676 (887)
Q Consensus 660 Aar~~~~-------------------~~~PVLGIN~ 676 (887)
+++.+.- ..+|++.|.+
T Consensus 94 ~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 129 (386)
T cd08191 94 LAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPT 129 (386)
T ss_pred HHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeC
Confidence 9887631 1579999875
No 207
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=48.58 E-value=39 Score=40.85 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=49.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCC---CeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQE---KMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~---~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
.-+|+||.|..+ ....-..|.+.|.+.. ++.|....--.+.+.. .. .+....+|.||.-||-|
T Consensus 289 ~v~IalVGKY~~-~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~------------~~-~~~L~~~dGIiLpGG~G 354 (525)
T TIGR00337 289 EVTIGIVGKYVE-LKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEE------------EG-AEFLKGVDGILVPGGFG 354 (525)
T ss_pred CcEEEEEeCCcC-CHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhh------------hh-hhhhcCCCEEEeCCCCC
Confidence 358999999764 2223356777775432 2233322111111100 00 01235689999999975
Q ss_pred h-----HHHHHHhccCCCCcEEEEeCC
Q 002733 656 V-----ILHASNLFRGAVPPVISFNLG 677 (887)
Q Consensus 656 T-----lL~Aar~~~~~~~PVLGIN~G 677 (887)
. .+.+++.+...++|+|||-+|
T Consensus 355 ~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 355 ERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred ChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 4 445677766678999999987
No 208
>PLN02335 anthranilate synthase
Probab=48.51 E-value=42 Score=35.88 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=45.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
.++|+||=-. +. ....|++||.+ .|+.+.+-+.-. .+.+++ ..++|.||..||-|..
T Consensus 18 ~~~ilviD~~-ds---ft~~i~~~L~~-~g~~~~v~~~~~-----------------~~~~~~~~~~~d~iVisgGPg~p 75 (222)
T PLN02335 18 NGPIIVIDNY-DS---FTYNLCQYMGE-LGCHFEVYRNDE-----------------LTVEELKRKNPRGVLISPGPGTP 75 (222)
T ss_pred cCcEEEEECC-CC---HHHHHHHHHHH-CCCcEEEEECCC-----------------CCHHHHHhcCCCEEEEcCCCCCh
Confidence 4688888332 22 24568888864 466665543210 001111 1357999999999954
Q ss_pred ------HHHHHhccCCCCcEEEEeCCC
Q 002733 658 ------LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 658 ------L~Aar~~~~~~~PVLGIN~G~ 678 (887)
+...+.+ ...+|||||-+|.
T Consensus 76 ~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 76 QDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred hhccchHHHHHHh-CCCCCEEEecHHH
Confidence 3334333 3468999999884
No 209
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=47.81 E-value=39 Score=42.42 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=47.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH-
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl- 657 (887)
.++|+||-... . ....+.+||.+ .|+++.+-+.... .+..+ ..++|.||+.||-|+.
T Consensus 516 ~~~IlVID~gd-s---~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp~ 573 (717)
T TIGR01815 516 GRRILLVDHED-S---FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRPA 573 (717)
T ss_pred CCEEEEEECCC-h---hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCch
Confidence 46888886542 2 24567788854 4666654322100 00001 1357999999999985
Q ss_pred ----HHHHHhccCCCCcEEEEeCCC
Q 002733 658 ----LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 658 ----L~Aar~~~~~~~PVLGIN~G~ 678 (887)
....+.+...++|||||-+|.
T Consensus 574 d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 574 DFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hcccHHHHHHHHHCCCCEEEECHHH
Confidence 334444445689999999986
No 210
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=47.74 E-value=32 Score=38.76 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=49.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-cCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~v-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 658 (887)
++++||.-..-... ...++.+.|.+ .++++.+ ..+... .+....+... ...+.+++|+||.||| |+++
T Consensus 25 ~kvlivtd~~~~~~-~~~~i~~~L~~-~~~~~~i~~~~~~~----~p~~~~v~~~----~~~~~~~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 25 SKIMIVCGNNTYKV-AGKEIIERLES-NNFTKEVLERDSLL----IPDEYELGEV----LIKLDKDTEFLLGIGS-GTII 93 (332)
T ss_pred CcEEEEECCcHHHH-HHHHHHHHHHH-cCCeEEEEecCCCC----CCCHHHHHHH----HHHhhcCCCEEEEECC-cHHH
Confidence 68899987664322 23778888854 3554433 111110 0111000000 0111227899999999 9999
Q ss_pred HHHHhcc-CCCCcEEEEeC
Q 002733 659 HASNLFR-GAVPPVISFNL 676 (887)
Q Consensus 659 ~Aar~~~-~~~~PVLGIN~ 676 (887)
-+++.+. ...+|++-|.+
T Consensus 94 D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 94 DLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 9998764 24689999876
No 211
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=47.53 E-value=12 Score=44.38 Aligned_cols=19 Identities=32% Similarity=0.158 Sum_probs=15.7
Q ss_pred EEeCccCCChHHHHHHHHH
Q 002733 240 YLHSKEGVWRTYAMVSRWR 258 (887)
Q Consensus 240 LVHC~aGKDRTG~lvALll 258 (887)
.+.|++||||||+|=+-+.
T Consensus 460 ~wNCkSGKDRTGmmD~eiK 478 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEIK 478 (564)
T ss_pred eeccCCCCccccchHHHHH
Confidence 6899999999999865553
No 212
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=47.08 E-value=49 Score=37.73 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=50.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTlL 658 (887)
++++||....-.. ....++.+.|.+ .++++.+.. +. ..+....+... .+.. ..++|+||.||| |+++
T Consensus 30 ~~~livtd~~~~~-~~~~~v~~~l~~-~~~~~~~~~-~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVLG-IVGDRVEASLKE-AGLTVVFEV-FN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHHH-HHHHHHHHHHHh-CCCeEEEEE-eC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 7899998554322 256778888854 456553221 10 01110000000 0011 236899999999 9999
Q ss_pred HHHHhccC-CCCcEEEEeC
Q 002733 659 HASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 659 ~Aar~~~~-~~~PVLGIN~ 676 (887)
-+++.+.. ..+|++.|.+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 99997752 4689999976
No 213
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=46.97 E-value=16 Score=45.91 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=37.2
Q ss_pred CCccEEEEEcCCchHHHHHHhcc----------------------CCCCcEEEEeC-------C---CCccCCCCCcccH
Q 002733 643 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSHPFEDY 690 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~----------------------~~~~PVLGIN~-------G---~LGFLt~~~~ee~ 690 (887)
.++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|.++ .+
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~--~i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALH--RI 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHH--HH
Confidence 46899999999999987764321 23789999953 3 688887643 34
Q ss_pred HHHHHHHH
Q 002733 691 RQDLRQVI 698 (887)
Q Consensus 691 ~~~L~~ll 698 (887)
-++++++.
T Consensus 171 ~~aid~i~ 178 (745)
T TIGR02478 171 CEAIDAIS 178 (745)
T ss_pred HHHHHHHH
Confidence 45555443
No 214
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=46.20 E-value=31 Score=36.03 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH------HHHHHhccCCC
Q 002733 596 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI------LHASNLFRGAV 668 (887)
Q Consensus 596 a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl------L~Aar~~~~~~ 668 (887)
...|.+||.+ .+.++.+-+.-.. +.+++ ..++|.||..||-|.. ....+.+. ..
T Consensus 12 t~nl~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~-~~ 72 (195)
T PRK07649 12 TFNLVQFLGE-LGQELVVKRNDEV-----------------TISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFA-GK 72 (195)
T ss_pred HHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhc-CC
Confidence 4568888865 4666665442110 00111 1257999999999874 33334433 46
Q ss_pred CcEEEEeCCC
Q 002733 669 PPVISFNLGS 678 (887)
Q Consensus 669 ~PVLGIN~G~ 678 (887)
+|||||-+|.
T Consensus 73 ~PvLGIClG~ 82 (195)
T PRK07649 73 IPIFGVCLGH 82 (195)
T ss_pred CCEEEEcHHH
Confidence 8999999885
No 215
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=46.06 E-value=20 Score=41.66 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=42.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTlL 658 (887)
++++||.-+.-.....+.++.+.|.+ .++++.+-.++.. .+....+.. -.+. ...++|+||.||| |.++
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~~----~p~~~~v~~----~~~~~~~~~~D~IIaiGG-GSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEA-AGINFEVYDDVRV----EPTDESFKD----AIAFAKKGQFDAFVAVGG-GSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCcEEEeCCCCC----CcCHHHHHH----HHHHHHhcCCCEEEEeCC-ccHH
Confidence 78999987664333456778888854 4666554222110 011000000 0000 1246899999999 9999
Q ss_pred HHHHhc
Q 002733 659 HASNLF 664 (887)
Q Consensus 659 ~Aar~~ 664 (887)
-+++.+
T Consensus 94 D~AKai 99 (414)
T cd08190 94 DTAKAA 99 (414)
T ss_pred HHHHHH
Confidence 887654
No 216
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=45.87 E-value=66 Score=35.29 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=52.1
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEc------CChhhHhhcCCCCccceeeeccCcccc-cCCccEEEE
Q 002733 578 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVE------PDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVAC 650 (887)
Q Consensus 578 ~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIv 650 (887)
..++++||.-.+.-. ...+++.+.|.. .|++|.+- .+.... .. -...+ ..++|+||.
T Consensus 18 ~~~~~lvv~d~~t~~-~~g~~v~~~l~~-~g~~v~~~~~~~~~~~~~~~-~~-------------~~~~~~~~~~d~ii~ 81 (250)
T PF13685_consen 18 GLKKVLVVTDENTYK-AAGEKVEESLKS-AGIEVAVIEEFVGDADEDEV-EK-------------LVEALRPKDADLIIG 81 (250)
T ss_dssp T-SEEEEEEETTHHH-HHHHHHHHHHHT-TT-EEEEEE-EE---BHHHH-HH-------------HHTTS--TT--EEEE
T ss_pred CCCcEEEEEcCCHHH-HHHHHHHHHHHH-cCCeEEEEecCCCCCCHHHH-HH-------------HHHHhcccCCCEEEE
Confidence 457999999887411 123566777753 46776531 111111 00 01122 357899999
Q ss_pred EcCCchHHHHHHhccC-CCCcEEEEeC--CCCccCCC
Q 002733 651 LGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLTS 684 (887)
Q Consensus 651 LGGDGTlL~Aar~~~~-~~~PVLGIN~--G~LGFLt~ 684 (887)
+|| ||+.-.++.... .++|.+.|-+ =+-||-++
T Consensus 82 vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~ 117 (250)
T PF13685_consen 82 VGG-GTIIDIAKYAAFELGIPFISVPTAASHDGFASP 117 (250)
T ss_dssp EES-HHHHHHHHHHHHHHT--EEEEES--SSGGGTSS
T ss_pred eCC-cHHHHHHHHHHHhcCCCEEEeccccccccccCC
Confidence 999 999999998863 6899999865 56677654
No 217
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=44.75 E-value=50 Score=36.01 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH-------------------
Q 002733 597 KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI------------------- 657 (887)
Q Consensus 597 ~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl------------------- 657 (887)
...++.+.+..++.|++.....+. ...+++.+.+|-||..||...+
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~---------------~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD 93 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEP---------------SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRD 93 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCH---------------HHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHH
Confidence 445566666678888876432100 0012233457888888873222
Q ss_pred ---HHHHHhccCCCCcEEEEeCCC
Q 002733 658 ---LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 658 ---L~Aar~~~~~~~PVLGIN~G~ 678 (887)
+...+.+...++|||||-.|.
T Consensus 94 ~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 94 LLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhH
Confidence 333444445679999999884
No 218
>PRK13566 anthranilate synthase; Provisional
Probab=44.57 E-value=69 Score=40.27 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCch-
Q 002733 578 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV- 656 (887)
Q Consensus 578 ~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGT- 656 (887)
..++|+||-.-. . ....|.+||.+ .|.+|.+-+.-... ..-+ ..++|.||+.||-|+
T Consensus 525 ~g~~IlvID~~d-s---f~~~l~~~Lr~-~G~~v~vv~~~~~~----------------~~~~-~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVDHED-S---FVHTLANYFRQ-TGAEVTTVRYGFAE----------------EMLD-RVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEECCC-c---hHHHHHHHHHH-CCCEEEEEECCCCh----------------hHhh-hcCCCEEEECCCCCCh
Confidence 356888887663 2 24568888864 57777653321100 0001 135799999999885
Q ss_pred ----HHHHHHhccCCCCcEEEEeCCC
Q 002733 657 ----ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 657 ----lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
+....+.+...++|||||-+|.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 4445555555689999999985
No 219
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=44.38 E-value=28 Score=39.57 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=38.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
++++||..+.-.......++.+.|.. ....++ .++.. .+....+...... ..+...++|+||.||| |+.+-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~-~~~~~~--~~v~~----~pt~~~v~~~~~~-~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGG-RLAALI--DDVAP----NPDVAQLDGLYAR-LWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhcc-CcEEEe--CCCCC----CcCHHHHHHHHHH-HHhcCCCCCEEEEeCC-ccHHH
Confidence 78999986553223456677777743 233333 11110 0100000000000 0011134899999999 99998
Q ss_pred HHHhc
Q 002733 660 ASNLF 664 (887)
Q Consensus 660 Aar~~ 664 (887)
+++.+
T Consensus 95 ~aK~i 99 (355)
T TIGR03405 95 TAKVL 99 (355)
T ss_pred HHHHH
Confidence 88764
No 220
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=44.20 E-value=77 Score=33.19 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=55.1
Q ss_pred EEEEEecCC----hhHHHH-HHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCc
Q 002733 581 TVLVLKKPG----PALMEE-AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 655 (887)
Q Consensus 581 ~VlIv~K~~----~~~~~~-a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDG 655 (887)
+||||.+.. ...... ...+...|.++.+++|.+..+... +. .+..+.+|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~~----------------~~~L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-LT----------------PENLKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-TS----------------HHCHCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-CC----------------hhHhcCCCEEEEECCCC
Confidence 689998883 222233 344555555467899887666321 10 11246789999998887
Q ss_pred h-----HHHHHHhccCCCCcEEEEe-CCCCccCCCCCcccHHHHHHHHHccCC
Q 002733 656 V-----ILHASNLFRGAVPPVISFN-LGSLGFLTSHPFEDYRQDLRQVIYGNN 702 (887)
Q Consensus 656 T-----lL~Aar~~~~~~~PVLGIN-~G~LGFLt~~~~ee~~~~L~~ll~G~~ 702 (887)
. -..+.+.+...+.+++||+ .+...|- +. ..+.+++-|.+
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~---~~----~~~~~l~Gg~f 109 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP---DW----PEYNELLGGYF 109 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT---T-----HHHHHHHS--S
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch---hH----HHHHHeeCccc
Confidence 4 3444555556789999999 5555663 22 33445665653
No 221
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=44.16 E-value=20 Score=47.21 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.2
Q ss_pred CCccEEEEEcCCchHHHHHHhcc-----CCCCcEEEEeC
Q 002733 643 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL 676 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~-----~~~~PVLGIN~ 676 (887)
-+.|.+|++|||||+-.|+.+.. +..++|+||--
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPK 233 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPK 233 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeE
Confidence 36899999999999988877553 34589999953
No 222
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=43.95 E-value=53 Score=39.98 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=50.8
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhcCCC--eEEEEcCCh--hhHhhcCCCCccceeeeccCcccccCCccEEE
Q 002733 577 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEK--MNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVA 649 (887)
Q Consensus 577 ~~p~~VlIv~K~~~---~~~~~a~~l~~~L~~~~~--~~V~ve~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVI 649 (887)
+.+++++|+..|.. .+.+..+..+.-|...-+ ++|.+...- +..+.+ .....+.|-||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~r---------------t~dl~kyDgIv 241 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVR---------------TLDLGKYDGIV 241 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHH---------------hhhccccceEE
Confidence 45788888877763 466666555554433334 445443321 111111 11245789999
Q ss_pred EEcCCchHHHHHHhc-cCC------CCcEEEEeCC
Q 002733 650 CLGGDGVILHASNLF-RGA------VPPVISFNLG 677 (887)
Q Consensus 650 vLGGDGTlL~Aar~~-~~~------~~PVLGIN~G 677 (887)
|+||||++--+.+=+ .+. ..||-=|-+|
T Consensus 242 ~vsGDGl~hEVlNGLl~R~D~~~~~klPigiiP~G 276 (579)
T KOG1116|consen 242 CVSGDGLLHEVLNGLLERPDWEAAVKLPIGIIPCG 276 (579)
T ss_pred EecCCcCHHHhhhccccccchhhHhcCceeEeecC
Confidence 999999998888733 332 3577666665
No 223
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=43.86 E-value=1.2e+02 Score=34.58 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=47.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl 657 (887)
++++||.-..-... ...++.+.|.+...+.+++.++- .+.+.. . .+.+ ..++|+||.+|| |++
T Consensus 35 ~~~livtd~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~t~~~v~~---------~----~~~~~~~~~d~IIaiGG-Gsv 99 (350)
T PRK00843 35 GRALIVTGPTTKKI-AGDRVEENLEDAGDVEVVIVDEATMEEVEK---------V----EEKAKDVNAGFLIGVGG-GKV 99 (350)
T ss_pred CeEEEEECCcHHHH-HHHHHHHHHHhcCCeeEEeCCCCCHHHHHH---------H----HHHhhccCCCEEEEeCC-chH
Confidence 68899987764322 23566666643322333333321 111100 0 0111 125799999999 999
Q ss_pred HHHHHhccC-CCCcEEEEeC
Q 002733 658 LHASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 658 L~Aar~~~~-~~~PVLGIN~ 676 (887)
+-+++.+.. ..+|++-|.+
T Consensus 100 ~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 100 IDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred HHHHHHHHHhcCCCEEEeCC
Confidence 999887642 4789988875
No 224
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=43.82 E-value=39 Score=38.20 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=49.1
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTlL 658 (887)
++++||.-..-. .....++.+.|. ..++.+.+-... +....+... .+. ...++|+||.+|| |+.+
T Consensus 24 ~~~liv~d~~~~-~~~~~~l~~~L~-~~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~~ 89 (347)
T cd08172 24 KRPLIVTGPRSW-AAAKPYLPESLA-AGEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKVL 89 (347)
T ss_pred CeEEEEECHHHH-HHHHHHHHHHHh-cCeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 688888875542 234566777773 345554432221 110000000 011 1246899999999 9999
Q ss_pred HHHHhccC-CCCcEEEEeC
Q 002733 659 HASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 659 ~Aar~~~~-~~~PVLGIN~ 676 (887)
-+++.+.. ..+|++.|.+
T Consensus 90 D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 90 DTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 99998753 4689999875
No 225
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=43.57 E-value=44 Score=38.26 Aligned_cols=87 Identities=11% Similarity=0.167 Sum_probs=48.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeE--EEEcCChhhHhhcCCCCccceeeeccCcccc-cCCc---cEEEEEc
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERV---DFVACLG 652 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~--V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---DlVIvLG 652 (887)
.++++||....-... ...++.+.|.+. +++ +++-+.... .+.+..+.... ..+ ..++ |+||.+|
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~~-g~~~~~~~~~~~e~----~k~~~~v~~~~----~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLREA-GAPVELLSVPSGEE----HKTLSTLSDLV----ERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHhc-CCceEEEEeCCCCC----CCCHHHHHHHH----HHHHHcCCCCCcEEEEEC
Confidence 378999987664322 556788888643 443 333121100 00000000000 000 1234 5999999
Q ss_pred CCchHHHHHHhcc---CCCCcEEEEeC
Q 002733 653 GDGVILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 653 GDGTlL~Aar~~~---~~~~PVLGIN~ 676 (887)
| |+++-+++.++ ..++|++-|.+
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 9 99999988764 24689998887
No 226
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=43.40 E-value=41 Score=37.99 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.3
Q ss_pred cEEEeCc-cCCChHHHHHHHHHHHcCC
Q 002733 238 PLYLHSK-EGVWRTYAMVSRWRQYMAR 263 (887)
Q Consensus 238 PVLVHC~-aGKDRTG~lvALll~~lGv 263 (887)
.|+++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999995 676 99988766654 454
No 227
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=42.20 E-value=44 Score=30.07 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=17.1
Q ss_pred CCCcEEEeCccCCChH-HHHHHHHHHHcCC
Q 002733 235 SKKPLYLHSKEGVWRT-YAMVSRWRQYMAR 263 (887)
Q Consensus 235 ~~~PVLVHC~aGKDRT-G~lvALll~~lGv 263 (887)
.+.||+++|..|. |. ...++..+..+|.
T Consensus 49 ~~~~ivl~c~~G~-~~~s~~aa~~L~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGG-EDLAPRAARRLSELGY 77 (92)
T ss_pred CCCeEEEEeCCCC-chHHHHHHHHHHHcCc
Confidence 4679999999998 53 2333333333453
No 228
>smart00340 HALZ homeobox associated leucin zipper.
Probab=42.06 E-value=14 Score=30.03 Aligned_cols=9 Identities=67% Similarity=1.460 Sum_probs=8.0
Q ss_pred HHHHHHHHH
Q 002733 80 EMKRCCESM 88 (887)
Q Consensus 80 ~~~~~~~~l 88 (887)
=||||||+|
T Consensus 9 ~LKrcce~L 17 (44)
T smart00340 9 LLKRCCESL 17 (44)
T ss_pred HHHHHHHHH
Confidence 489999998
No 229
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=42.03 E-value=51 Score=37.73 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=50.0
Q ss_pred cCCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhHhhcCCCCccceeeecc-CcccccCCccEEEEEcC
Q 002733 577 TTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGG 653 (887)
Q Consensus 577 ~~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~--ve~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~DlVIvLGG 653 (887)
..+++++||.-..-.. ....++.+.|.+ .++++. +-+.... .+.+..+...... .......++|+||.+||
T Consensus 24 ~~~~~~lvVtd~~v~~-~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 24 EGSGRRFVVVDQNVDK-LYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG 97 (354)
T ss_pred cCCCeEEEEECccHHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 3568999998555322 134678888854 344433 2121110 0000000000000 00112234599999999
Q ss_pred CchHHHHHHhcc---CCCCcEEEEeC
Q 002733 654 DGVILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 654 DGTlL~Aar~~~---~~~~PVLGIN~ 676 (887)
|+++-+++..+ ..++|++-|.+
T Consensus 98 -G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 99999988775 55788877765
No 230
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=41.65 E-value=1.5e+02 Score=31.60 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=52.3
Q ss_pred hhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 002733 167 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 243 (887)
Q Consensus 167 edLa~L~elGIKTVIDLR~e~~--Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~-~PVLVHC 243 (887)
+-++.+++.|++..+++-.-.. ..+.+.....+.+...|+..+.++-. ....+++++.++++.+.+..+ .|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3456778889999999943331 11111122335566788988888755 456788999988888764433 6788887
Q ss_pred ccCC
Q 002733 244 KEGV 247 (887)
Q Consensus 244 ~aGK 247 (887)
+--.
T Consensus 198 Hn~~ 201 (265)
T cd03174 198 HNTL 201 (265)
T ss_pred CCCC
Confidence 7655
No 231
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=41.42 E-value=23 Score=44.59 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCccEEEEEcCCchHHHHHHhc----------------------cCCCCcEEEEeC-------C---CCccCCCCCcccH
Q 002733 643 ERVDFVACLGGDGVILHASNLF----------------------RGAVPPVISFNL-------G---SLGFLTSHPFEDY 690 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~----------------------~~~~~PVLGIN~-------G---~LGFLt~~~~ee~ 690 (887)
.++|.+|++|||||+-.|..+. ....++|+||-- | ++||-|..+ .+
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfdTAl~--~i 173 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALH--RI 173 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHHHHHH--HH
Confidence 4799999999999998876431 123679999843 2 688887643 33
Q ss_pred HHHHHHH
Q 002733 691 RQDLRQV 697 (887)
Q Consensus 691 ~~~L~~l 697 (887)
-++++++
T Consensus 174 ~eaId~i 180 (762)
T cd00764 174 CEVVDAI 180 (762)
T ss_pred HHHHHHH
Confidence 3444444
No 232
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=39.11 E-value=25 Score=36.29 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=44.0
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccccc-CCccEEEEEcCCchH---
Q 002733 582 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLH-ERVDFVACLGGDGVI--- 657 (887)
Q Consensus 582 VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVIvLGGDGTl--- 657 (887)
|+||-..+ .....|+++|.+ .+.+|.+-+.-. .+.+++. ..+|.||..||.|..
T Consensus 2 il~id~~d----sf~~nl~~~l~~-~~~~~~v~~~~~-----------------~~~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYD----SFTYNLYQYFCE-LGTEVMVKRNDE-----------------LQLTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCC----chHHHHHHHHHH-CCCcEEEEeCCC-----------------CCHHHHHhcCCCeEEEcCCCCChHhC
Confidence 44554443 235667888864 466666544210 0011121 257999999999984
Q ss_pred ---HHHHHhccCCCCcEEEEeCCC
Q 002733 658 ---LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 658 ---L~Aar~~~~~~~PVLGIN~G~ 678 (887)
+...+.+ ...+|||||-+|.
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 60 GISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCchHHHHHh-cCCCCEEEECHHH
Confidence 3444444 3479999998875
No 233
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=39.00 E-value=59 Score=27.88 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=19.1
Q ss_pred CCCCcEEEeCccCCChHHHHHHHHHH
Q 002733 234 SSKKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 234 ~~~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
..+.+|+++|..|. |+..++..++.
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~ 72 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK 72 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH
Confidence 45789999999987 77776666554
No 234
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=38.83 E-value=49 Score=42.21 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCc
Q 002733 578 TPRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDG 655 (887)
Q Consensus 578 ~p~~VlIv~K~~~~~~~~a~~l~~~L~~-~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDG 655 (887)
..++++||..+.-.......++.+.|.+ ..++++.+-.++.. .+....+... ... ...++|+||.||| |
T Consensus 479 ~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~----np~~~~v~~~----~~~~~~~~~D~IIaiGG-G 549 (862)
T PRK13805 479 GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEP----DPTLSTVRKG----AELMRSFKPDTIIALGG-G 549 (862)
T ss_pred CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-c
Confidence 3479999986543333356778888852 34666554332210 0100000000 000 1247899999999 9
Q ss_pred hHHHHHHhc
Q 002733 656 VILHASNLF 664 (887)
Q Consensus 656 TlL~Aar~~ 664 (887)
+.+-+++.+
T Consensus 550 SviD~AK~i 558 (862)
T PRK13805 550 SPMDAAKIM 558 (862)
T ss_pred hHHHHHHHH
Confidence 999888765
No 235
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=38.74 E-value=18 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCcEEEeCccCCChHHHHHHHHHH
Q 002733 236 KKPLYLHSKEGVWRTYAMVSRWRQ 259 (887)
Q Consensus 236 ~~PVLVHC~aGKDRTG~lvALll~ 259 (887)
.+|+.|||..|.+|||+.+|+...
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l 1041 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISIL 1041 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHH
Confidence 789999999999999997766543
No 236
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=37.14 E-value=2.4e+02 Score=26.18 Aligned_cols=90 Identities=13% Similarity=0.250 Sum_probs=56.5
Q ss_pred CEEEEEecCChhHHHH-HHHHHHHHhcCCCeEEEEcC-ChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchH
Q 002733 580 RTVLVLKKPGPALMEE-AKEVASFLYHQEKMNILVEP-DVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 657 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~-a~~l~~~L~~~~~~~V~ve~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTl 657 (887)
++|++++-.+-..... +.++-++|.+ +|+++-++. .+.+ + +...+++|+||+-. +
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e-~-----------------~~~~~~~D~iv~t~-~--- 59 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE-I-----------------ETYMDGVHLICTTA-R--- 59 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHH-H-----------------hhhcCCCCEEEECC-c---
Confidence 3799999999766555 5788888854 678766654 2211 1 11224579886633 1
Q ss_pred HHHHHhccCCCCcEEEEeCCCCccCCCCCcccHHHHHHHHHcc
Q 002733 658 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 700 (887)
Q Consensus 658 L~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~~~L~~ll~G 700 (887)
+ ...+ .++|++-+ ++||+.++.+++++.+.+.+.|
T Consensus 60 ~--~~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 60 V--DRSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred c--cccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 1 1111 14674332 3699999999999988888765
No 237
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=36.30 E-value=1.2e+02 Score=31.05 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=30.9
Q ss_pred CCccEEEEEcCCc---------hHHHHHHhccCCCCcEEEEeCCCCcc
Q 002733 643 ERVDFVACLGGDG---------VILHASNLFRGAVPPVISFNLGSLGF 681 (887)
Q Consensus 643 ~~~DlVIvLGGDG---------TlL~Aar~~~~~~~PVLGIN~G~LGF 681 (887)
++.|+|++.||.+ .++...+.+...+.+|.+|-.|..-+
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~l 112 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATV 112 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHH
Confidence 4689999999964 36777777777889999999998543
No 238
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=35.98 E-value=1.6e+02 Score=28.39 Aligned_cols=94 Identities=20% Similarity=0.103 Sum_probs=48.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCch--
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV-- 656 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGT-- 656 (887)
++|+|+.-++-...+.+ .+.+.|.. .++++.+-...........+... . .....++. ...+|++|+.||.+.
T Consensus 2 ~~v~ill~~g~~~~e~~-~~~~~~~~-a~~~v~vvs~~~~~v~s~~g~~i-~--~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVDAAELS-ALKAALKA-AGANVKVVAPTLGGVVDSDGKTL-E--VDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcCHHHHH-HHHHHHHH-CCCEEEEEecCcCceecCCCcEE-e--cceeecCCChhhcCEEEECCCccCHH
Confidence 46888887775444433 34444433 35554432221111111111100 0 00111222 235799999999775
Q ss_pred -------HHHHHHhccCCCCcEEEEeCCC
Q 002733 657 -------ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 657 -------lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
++...+.+.....||.+|-.|.
T Consensus 77 ~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 77 ALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred HHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 4455666666788999998874
No 239
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=35.51 E-value=42 Score=32.85 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=51.1
Q ss_pred CEEEEEecCChhHH-HHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHH
Q 002733 580 RTVLVLKKPGPALM-EEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 658 (887)
Q Consensus 580 ~~VlIv~K~~~~~~-~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL 658 (887)
++|+|++-+..+.. +....++++|.+..|++|.++.-....+. ..+. ..+. ......+|.||+|=--|+.-
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~---~~g~-~~W~----~~~~~~ad~Vliv~S~~~~~ 72 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIA---RQGP-PRWM----ERQIREADKVLIVCSPGYKE 72 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccc---cCCH-HHHH----HHHHhcCCEEEEEeccchhH
Confidence 58999999887654 67889999997655999998763321111 1010 0111 12256789999999999877
Q ss_pred HHHHhcc
Q 002733 659 HASNLFR 665 (887)
Q Consensus 659 ~Aar~~~ 665 (887)
.......
T Consensus 73 ~~~~~~~ 79 (150)
T PF08357_consen 73 RYDKKAD 79 (150)
T ss_pred HHHHhhc
Confidence 6665543
No 240
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.49 E-value=2.4e+02 Score=30.61 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=53.2
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 002733 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 244 (887)
Q Consensus 166 ~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~-PVLVHC~ 244 (887)
.+-++..++.|+...+++-....-.+.+.....+.+...|+..+.++=. .....++++.++++.+....+. |+-+||+
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 3456777888999999983322111111112234456678988888654 5567889999988888654455 8888887
Q ss_pred cCC
Q 002733 245 EGV 247 (887)
Q Consensus 245 aGK 247 (887)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 655
No 241
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=34.44 E-value=25 Score=39.91 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=43.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
++++||.-+.-.......++.+.|.+ .++++.+-..+.. .+....+.... ..-...++|+||.||| |+.+-
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~~---~~~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEAA---EQARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHHH---HHHHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHHH---HHHHhcCCCEEEEcCC-CCcCc
Confidence 49999986622333367888888854 4677654332210 00000000000 0001247899999999 99999
Q ss_pred HHHhcc
Q 002733 660 ASNLFR 665 (887)
Q Consensus 660 Aar~~~ 665 (887)
+++.+.
T Consensus 93 ~aK~va 98 (366)
T PF00465_consen 93 AAKAVA 98 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 242
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=33.73 E-value=38 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=25.9
Q ss_pred CccEEEEEcCCchH------HHHHHhccCCCCcEEEEeCCC
Q 002733 644 RVDFVACLGGDGVI------LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 644 ~~DlVIvLGGDGTl------L~Aar~~~~~~~PVLGIN~G~ 678 (887)
.+|.||..||.|.. +...+.+...++|||||-.|.
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 57999999997643 344555555679999999874
No 243
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=33.62 E-value=2.6e+02 Score=31.96 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=56.1
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEe
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLH 242 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~--~PVLVH 242 (887)
..+.+++.+++|.++.+++-....-.+.......+.+...|...+.+.=. .....++++.+.+..+.+..+ -|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 45667888999999999996554111111123345567788888877655 566788999888888754433 688898
Q ss_pred CccCC
Q 002733 243 SKEGV 247 (887)
Q Consensus 243 C~aGK 247 (887)
|+...
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 88766
No 244
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=33.60 E-value=1.8e+02 Score=34.02 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=42.8
Q ss_pred CcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCCC-------------CccCCC---CCcccHHHHHHHHHcc
Q 002733 637 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGS-------------LGFLTS---HPFEDYRQDLRQVIYG 700 (887)
Q Consensus 637 ~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G~-------------LGFLt~---~~~ee~~~~L~~ll~G 700 (887)
+...+...+|++|+-||=||+.-+.+ .++|++.+-.+. .|.... .+.+.+.+++.+++..
T Consensus 293 p~~~~l~~ad~vI~hGG~gtt~eaL~----~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 293 PQLELLPRADAVIHHGGAGTTSEALY----AGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred CHHHHhhhcCEEEecCCcchHHHHHH----cCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcC
Confidence 33456789999999999999999875 368999886652 343332 3456667777777654
Q ss_pred C
Q 002733 701 N 701 (887)
Q Consensus 701 ~ 701 (887)
.
T Consensus 369 ~ 369 (406)
T COG1819 369 D 369 (406)
T ss_pred H
Confidence 3
No 245
>PRK05380 pyrG CTP synthetase; Validated
Probab=33.55 E-value=94 Score=37.78 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=27.5
Q ss_pred ccCCccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCC
Q 002733 641 LHERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 677 (887)
Q Consensus 641 ~~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGIN~G 677 (887)
....+|-||+-||=|. .+.+++.+...++|+|||-+|
T Consensus 340 ~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 340 LLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 3467899999998432 455666666678999999887
No 246
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=33.53 E-value=80 Score=34.18 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=25.6
Q ss_pred cCCccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCCC
Q 002733 642 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 642 ~~~~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
...+|.||.-||-|+ .+.+.+.....++|+|||-+|.
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG~ 94 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLGM 94 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhHH
Confidence 356799999898543 2334455445689999999873
No 247
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=33.38 E-value=40 Score=38.63 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=40.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccc-ccCCccEEEEEcCCchH
Q 002733 579 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlVIvLGGDGTl 657 (887)
.++++||....-.......++.+.|.+ .++++.+-.++.. .+....+.. -.+. ...++|+||.||| |..
T Consensus 28 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~d~IIaiGG-Gsv 97 (377)
T cd08188 28 AKKVLLVSDPGVIKAGWVDRVIESLEE-AGLEYVVFSDVSP----NPRDEEVMA----GAELYLENGCDVIIAVGG-GSP 97 (377)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 378999987543222245667777753 4555543222210 010000000 0001 1247899999999 999
Q ss_pred HHHHHhc
Q 002733 658 LHASNLF 664 (887)
Q Consensus 658 L~Aar~~ 664 (887)
+-+++.+
T Consensus 98 iD~AK~i 104 (377)
T cd08188 98 IDCAKGI 104 (377)
T ss_pred HHHHHHH
Confidence 9998654
No 248
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=32.19 E-value=1.9e+02 Score=28.87 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEeCccCCChHHHHHHHHH
Q 002733 222 EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWR 258 (887)
Q Consensus 222 e~v~~flelI~d~~~~PVLVHC~aGKDRTG~lvALll 258 (887)
+.+.+.+.-+ ..+.||+++|..|. ++..++..+.
T Consensus 37 ~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~aa~~L~ 70 (145)
T cd01535 37 AQLAQALEKL--PAAERYVLTCGSSL-LARFAAADLA 70 (145)
T ss_pred HHHHHHHHhc--CCCCCEEEEeCCCh-HHHHHHHHHH
Confidence 3444433333 34679999999975 6665554443
No 249
>PRK07567 glutamine amidotransferase; Provisional
Probab=31.16 E-value=39 Score=36.58 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=25.0
Q ss_pred CCccEEEEEcCCchH------------------HHHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVI------------------LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTl------------------L~Aar~~~~~~~PVLGIN~G~ 678 (887)
+.+|.||+.||-+.. ..+.+.+...++|||||-+|+
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 468999999996432 112233335679999999986
No 250
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=30.90 E-value=3.4e+02 Score=29.42 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=48.7
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002733 169 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 247 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGK 247 (887)
++..++.|+...+++-....-.+.+.....+.+...|+..+.++=. .....++++.+++..+.+..+-|+-+||+--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3456778998887774433111111112224445678998888765 45677888888888775444467777777655
No 251
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.72 E-value=45 Score=37.58 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=27.5
Q ss_pred cccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCC
Q 002733 640 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG 677 (887)
Q Consensus 640 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G 677 (887)
++.+..+++|++|-|=|.+- +..+.+.++||+||-=|
T Consensus 262 el~~~~~lvvTvGDDTT~va-gdIl~RfgipiiGItDg 298 (367)
T COG4069 262 ELIEGAGLVVTVGDDTTEVA-GDILYRFGIPIIGITDG 298 (367)
T ss_pred HhhccCceEEEEcCcchhHH-HHHHHhcCCcEEecccC
Confidence 34567789999998877664 55556789999997443
No 252
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=29.45 E-value=3.2e+02 Score=30.08 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=51.7
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCcc
Q 002733 168 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSKE 245 (887)
Q Consensus 168 dLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~--~PVLVHC~a 245 (887)
-++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++.+++..+.+..+ -|+-+||+-
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 35667778999999876543111111112234456678998888765 456788999988888754433 688888876
Q ss_pred CC
Q 002733 246 GV 247 (887)
Q Consensus 246 GK 247 (887)
-.
T Consensus 193 ~~ 194 (266)
T cd07944 193 NL 194 (266)
T ss_pred Cc
Confidence 55
No 253
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=29.31 E-value=1.2e+02 Score=33.78 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=28.9
Q ss_pred cCCccEEEEEcCCch-------HHHHHHhccCCCCcEEEEeCCC
Q 002733 642 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 642 ~~~~DlVIvLGGDGT-------lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
.+.+|+||+-||+|. ++...+.+.....+|.+|-.|.
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~ 116 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGV 116 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHH
Confidence 357899999999774 6666767666778999998874
No 254
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=28.94 E-value=73 Score=36.80 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=44.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccc-cCCccEEEEEcCCchH-
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI- 657 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DlVIvLGGDGTl- 657 (887)
++|+|+-= + ....++++|.+ .|..+.+-+.... .+++ ..++|.||.-||.|..
T Consensus 178 ~~I~viD~-G-----~k~nivr~L~~-~G~~v~vvp~~~~------------------~~~i~~~~~DGIvLSgGPgdp~ 232 (360)
T PRK12564 178 YKVVAIDF-G-----VKRNILRELAE-RGCRVTVVPATTT------------------AEEILALNPDGVFLSNGPGDPA 232 (360)
T ss_pred CEEEEEeC-C-----cHHHHHHHHHH-CCCEEEEEeCCCC------------------HHHHHhcCCCEEEEeCCCCChH
Confidence 57777643 2 12358888865 4666665332110 0111 1257999999997753
Q ss_pred -----HHHHHhccCCCCcEEEEeCCC
Q 002733 658 -----LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 658 -----L~Aar~~~~~~~PVLGIN~G~ 678 (887)
+..++.+...++|||||-+|+
T Consensus 233 ~~~~~~~~i~~~~~~~~PilGIClG~ 258 (360)
T PRK12564 233 ALDYAIEMIRELLEKKIPIFGICLGH 258 (360)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECHHH
Confidence 344555555679999999885
No 255
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.27 E-value=2.2e+02 Score=29.31 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=68.0
Q ss_pred eeeEEEecCCCCeeEEEEEEECCEEeEEEe-eceeeecCCCChhHhhhccCCCccCCCCCcceeeecCCCC-----CCCC
Q 002733 734 LNEVVVDRGSNPYLSKIECYEHDRLITKVQ-GDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHS-----LSFR 807 (887)
Q Consensus 734 LNDVvI~rg~~~~~~~i~v~idg~~l~~~r-gDGvIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhs-----Ls~R 807 (887)
-+|+-|..+...++- .|+.+|+.+.+.+ .||+..-|+-|-+=-=. .+=+|..++++--...|.. .+..
T Consensus 29 ~~~v~~~~s~tGRiR--qV~~~G~~~~t~Ra~DG~~tL~~~Ga~~L~~----~l~~P~~RVvV~~E~e~f~r~Gk~VFaK 102 (155)
T COG1370 29 PDDVKIVLSKTGRIR--QVFVDGERIATVRANDGLFTLTIEGARRLHR----ALPFPRMRVVVSDEAEEFVRKGKSVFAK 102 (155)
T ss_pred cCCceEEEcCCCceE--EEEECCEEEEEEEcCCceEEechhhhHHHHh----cCCCCceEEEeccccHHHHHhccchhhh
Confidence 456666544444442 3688999999999 99999888877654333 3556788877766666653 2222
Q ss_pred Cee------eCCCCEEEEEEcCCCC--CcEEEEecCcccccCCCCCEEEEEEe
Q 002733 808 PVI------LPDSARLELKIPDDAR--SNAWVSFDGKRRQQLSRGDSVRIFMS 852 (887)
Q Consensus 808 PiV------lp~~s~I~I~v~~~~r--~~~~vsiDG~~~~~L~~Gd~V~I~~S 852 (887)
-+| -|.+..+ -+..+.+ ....+.+.|.+...++.|.-|.|+..
T Consensus 103 fVi~~D~~iR~~dEvl--VVne~d~LlAvGra~ls~~E~~~~~~G~AVkVr~G 153 (155)
T COG1370 103 FVIDVDEEIRAGDEVL--VVNEDDELLAVGRALLSGAEMREFERGMAVKVREG 153 (155)
T ss_pred heeccCcccCCCCeEE--EECCCCcEEEeeeEeecHHHHhhccccEEEEEecC
Confidence 222 2222222 1222111 12356788888888999999988764
No 256
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=27.71 E-value=64 Score=33.39 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.1
Q ss_pred CccEEEEEcCCchHH------HHHHhccCCCCcEEEEeCCC
Q 002733 644 RVDFVACLGGDGVIL------HASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL------~Aar~~~~~~~PVLGIN~G~ 678 (887)
+.|.+|+.||.|..- ...+.+ ...+|||||-+|.
T Consensus 43 ~~~~iilsgGp~~~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 43 NPTHLVISPGPCTPNEAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred CCCEEEEeCCCCChHHCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 468999999998753 333443 3578999999885
No 257
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=27.57 E-value=1.1e+02 Score=34.93 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=39.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEEEcCCchHHH
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 659 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvLGGDGTlL~ 659 (887)
++++||.-+.-... ....+.+.|. +..+.+-++... .+....+......-.+.-..+-|+||.+|| |.++-
T Consensus 20 ~r~lIVtD~~v~~l-~~~~l~~~L~---~~~~~~~~~~e~----~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D 90 (346)
T cd08196 20 ENDVFIVDANVAEL-YRDRLDLPLD---AAPVIAIDATEE----NKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQD 90 (346)
T ss_pred CeEEEEECccHHHH-HHHHHHHHhc---CCeEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHH
Confidence 78899988875433 5677777774 233333222110 011000000000000000123399999999 99998
Q ss_pred HHHhcc
Q 002733 660 ASNLFR 665 (887)
Q Consensus 660 Aar~~~ 665 (887)
++..++
T Consensus 91 ~ak~vA 96 (346)
T cd08196 91 VTTFVA 96 (346)
T ss_pred HHHHHH
Confidence 887664
No 258
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=27.29 E-value=28 Score=35.38 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=27.9
Q ss_pred cCCccEEEEEcCCch------HHHHHHhccCCCCcEEEEeCCC
Q 002733 642 HERVDFVACLGGDGV------ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 642 ~~~~DlVIvLGGDGT------lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
..++|.||+.||=|. .+.+.+.+....+|||||-+|+
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 467899999999554 4455566656789999998874
No 259
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=27.17 E-value=1.1e+02 Score=35.46 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCccEEEEEcCCchHHHHHHhcc---CCCCcEEEEeC
Q 002733 643 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 676 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~---~~~~PVLGIN~ 676 (887)
++.|+||.||| |.++-++..++ ..++|++-|.+
T Consensus 98 ~r~~~IIalGG-G~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 98 DRHSYVIAIGG-GAVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred CcCcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34569999999 99999887664 45789888875
No 260
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=27.10 E-value=1.6e+02 Score=31.62 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCcccccCCccEEEE----EcCCc-hHHHHHHhccCCCC
Q 002733 595 EAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC----LGGDG-VILHASNLFRGAVP 669 (887)
Q Consensus 595 ~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIv----LGGDG-TlL~Aar~~~~~~~ 669 (887)
....|..+|. +.|..|....+..+.+.... .. +|+||. -++|| ++++-.|......+
T Consensus 12 i~~~l~~~L~-~~g~~v~~~~~~~~a~~~~~----------------~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~ 73 (229)
T COG0745 12 LAELLKEYLE-EEGYEVDVAADGEEALEAAR----------------EQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGP 73 (229)
T ss_pred HHHHHHHHHH-HCCCEEEEECCHHHHHHHHh----------------cC-CCEEEEECCCCCCCHHHHHHHHHhhcCCCC
Confidence 3455677775 46888887766544332110 12 566664 36788 77777774456778
Q ss_pred cEEEEe-------------CCCCccCC-CCCcccHHHHHHHHHccC
Q 002733 670 PVISFN-------------LGSLGFLT-SHPFEDYRQDLRQVIYGN 701 (887)
Q Consensus 670 PVLGIN-------------~G~LGFLt-~~~~ee~~~~L~~ll~G~ 701 (887)
||+=+. .|---|++ +|++.++...+..+++..
T Consensus 74 PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 74 PIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred cEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 887553 36666666 689999998888888654
No 261
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=27.08 E-value=3.7e+02 Score=30.74 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=55.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 002733 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 242 (887)
Q Consensus 165 t~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~--~~PVLVH 242 (887)
..+-+++.+++|+++.+++-....-.+.+.....+.+...|...+.+.=. .....++++.+++..+.+.. +-|+=||
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 35567788899999999996553111111122335566788888877654 45678899998888875443 5688888
Q ss_pred CccCC
Q 002733 243 SKEGV 247 (887)
Q Consensus 243 C~aGK 247 (887)
|+-..
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 87665
No 262
>PRK10586 putative oxidoreductase; Provisional
Probab=27.02 E-value=69 Score=36.81 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCccEEEEEcCCchHHHHHHhccC-CCCcEEEEeC--CCCccCC
Q 002733 643 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLT 683 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PVLGIN~--G~LGFLt 683 (887)
.++|+||.+|| |..+-+++.+.. ..+|++.|.+ |+=+..+
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT~a~t~s~~s 127 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPTIAATCAAWT 127 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeCCcccccccc
Confidence 46899999999 999999998754 5789999986 4434333
No 263
>PRK09065 glutamine amidotransferase; Provisional
Probab=26.81 E-value=53 Score=35.37 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCccEEEEEcCCchH----------HHHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVI----------LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTl----------L~Aar~~~~~~~PVLGIN~G~ 678 (887)
..+|.||+.||-.+. +...+.+...++|||||-+|+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~ 98 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGH 98 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhH
Confidence 457999999998762 333444444679999999985
No 264
>PRK08250 glutamine amidotransferase; Provisional
Probab=26.57 E-value=59 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=25.2
Q ss_pred CCccEEEEEcCCchH---------------HHHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVI---------------LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTl---------------L~Aar~~~~~~~PVLGIN~G~ 678 (887)
.++|.||+.||-.+. ....+.+...++|||||-.|.
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 468999999994431 233444445689999998875
No 265
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=25.70 E-value=1e+02 Score=31.93 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCccEEEEEcCCch-----------------------HHHHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGV-----------------------ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGT-----------------------lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
..+|.||.-||-+. .....+.+...++|||||-.|.
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~ 110 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGM 110 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchH
Confidence 46899999999432 2344455545678999999874
No 266
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=24.54 E-value=4.6e+02 Score=30.34 Aligned_cols=78 Identities=6% Similarity=0.055 Sum_probs=51.5
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002733 169 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 247 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGK 247 (887)
++..++.|+...++.-.....++.+.....+.+...|+..+.++=. .....+.++.++++.+.+..+-|+-+||+--.
T Consensus 122 v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~ 199 (378)
T PRK11858 122 VEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDT-VGILDPFTMYELVKELVEAVDIPIEVHCHNDF 199 (378)
T ss_pred HHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEecc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 4566778999888763322111222222334556789999988865 46678889988888775444678999998665
No 267
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.05 E-value=2.7e+02 Score=33.29 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=57.8
Q ss_pred ccCCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhh-------HhhcCCCCccceeeeccCcccccCCccEE
Q 002733 576 KTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHD-------IFARIPGFGFVQTFYLQDTSDLHERVDFV 648 (887)
Q Consensus 576 ~~~p~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~DlV 648 (887)
...|++|+||+-+...+..-..+.++- +.+.++|++-|..-+ +...+.. -+-...+|++
T Consensus 132 P~~p~~IGVITS~tgAairDIl~~~~r--R~P~~~viv~pt~VQG~~A~~eIv~aI~~------------an~~~~~Dvl 197 (440)
T COG1570 132 PFFPKKIGVITSPTGAALRDILHTLSR--RFPSVEVIVYPTLVQGEGAAEEIVEAIER------------ANQRGDVDVL 197 (440)
T ss_pred CCCCCeEEEEcCCchHHHHHHHHHHHh--hCCCCeEEEEeccccCCCcHHHHHHHHHH------------hhccCCCCEE
Confidence 446899999999987664433333322 236688887665321 1111110 0112348999
Q ss_pred EEEcCCchHH--------HHHHhccCCCCcEEEEeCCCCccCCCCCcccHH
Q 002733 649 ACLGGDGVIL--------HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYR 691 (887)
Q Consensus 649 IvLGGDGTlL--------~Aar~~~~~~~PVLGIN~G~LGFLt~~~~ee~~ 691 (887)
|+-=|=|.+= ..+|.+..+.+||+. -+|.=|++...|+.
T Consensus 198 IVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvIS----AVGHEtD~tL~DfV 244 (440)
T COG1570 198 IVARGGGSIEDLWAFNDEIVARAIAASRIPVIS----AVGHETDFTLADFV 244 (440)
T ss_pred EEecCcchHHHHhccChHHHHHHHHhCCCCeEe----ecccCCCccHHHhh
Confidence 9988879872 335666677899986 34555555554443
No 268
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.93 E-value=2.6e+02 Score=30.46 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=64.1
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEE---ecCCCC---CCCHHHHHHHHHHHhcCCCCcE
Q 002733 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKI---PVEVRT---APTMEQVEKFASLVSNSSKKPL 239 (887)
Q Consensus 166 ~edLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihI---PV~d~~---~ps~e~v~~flelI~d~~~~PV 239 (887)
.+=++.|+++|+|.|-=+.+.. +... ....++++..|++..++ .+.++. ..+++.+.+++.-+.+.....|
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~--~~v~-~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYT--PETS-RPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCc--HHHH-HHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 4457889999999999998875 1111 24667889999998776 343221 2457777777766644445678
Q ss_pred EEeCccCCChHHHHHHHHHHHcCCCH
Q 002733 240 YLHSKEGVWRTYAMVSRWRQYMARCA 265 (887)
Q Consensus 240 LVHC~aGKDRTG~lvALll~~lGv~~ 265 (887)
++-|+. - ||--++.-+..-+|.|.
T Consensus 186 fisCTn-L-rt~~vi~~lE~~lGkPV 209 (239)
T TIGR02990 186 FLSCTA-L-RAATCAQRIEQAIGKPV 209 (239)
T ss_pred EEeCCC-c-hhHHHHHHHHHHHCCCE
Confidence 888874 4 67777777766667443
No 269
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=23.77 E-value=98 Score=34.86 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=41.0
Q ss_pred CcccccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeCC-----------C--CccCCC---CCcccHHHHHHHHHc
Q 002733 637 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-----------S--LGFLTS---HPFEDYRQDLRQVIY 699 (887)
Q Consensus 637 ~~~~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~G-----------~--LGFLt~---~~~ee~~~~L~~ll~ 699 (887)
+..++...+|++|+-||=||+..+.. .++|++.+..+ . .|.... ++.+++.+++.+++.
T Consensus 297 p~~~ll~~~d~~I~hgG~~t~~eal~----~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 297 PHDWLLPRCAAVVHHGGAGTTAAALR----AGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred CHHHHhhhhheeeecCCchhHHHHHH----cCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 34556678999999999999998874 46899888542 1 233222 356677777777765
No 270
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=23.47 E-value=92 Score=25.24 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.1
Q ss_pred cCCccEEEEEcCCchHHH---------HHHhccCCCCcEEEEeCCCC
Q 002733 642 HERVDFVACLGGDGVILH---------ASNLFRGAVPPVISFNLGSL 679 (887)
Q Consensus 642 ~~~~DlVIvLGGDGTlL~---------Aar~~~~~~~PVLGIN~G~L 679 (887)
....|.+|+.||.++... ....+.....|++|+..|..
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccc
Confidence 457899999999888733 33333345679999988863
No 271
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=22.94 E-value=2.8e+02 Score=28.12 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=32.2
Q ss_pred CCccEEEEEcCC---------chHHHHHHhccCCCCcEEEEeCCCCcc
Q 002733 643 ERVDFVACLGGD---------GVILHASNLFRGAVPPVISFNLGSLGF 681 (887)
Q Consensus 643 ~~~DlVIvLGGD---------GTlL~Aar~~~~~~~PVLGIN~G~LGF 681 (887)
+.+|++++-||+ -.++..++.|...+.||..|--|..-+
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L 112 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVL 112 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHH
Confidence 578999999994 458888888888899999998876443
No 272
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=22.53 E-value=61 Score=33.74 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCchHH----------HHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVIL----------HASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL----------~Aar~~~~~~~PVLGIN~G~ 678 (887)
.++|.||.-||-++.. ...+.+...+.|||||-.|.
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 3589999999988752 33333444678999999885
No 273
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=22.48 E-value=59 Score=33.31 Aligned_cols=34 Identities=18% Similarity=0.126 Sum_probs=25.1
Q ss_pred ccEEEEEcCCch-----HHHHHHhccCCCCcEEEEeCCC
Q 002733 645 VDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 645 ~DlVIvLGGDGT-----lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
.|.||..||.+. .....+.+...++|||||-+|.
T Consensus 42 ~~glii~Gg~~~~~~~~~~~~i~~~~~~~~PilGIC~G~ 80 (188)
T TIGR00888 42 PKGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGM 80 (188)
T ss_pred CCEEEECCCCCCcCcCCchHHHHHHHhCCCCEEEECHHH
Confidence 468999999765 3345555556789999999884
No 274
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=22.37 E-value=75 Score=35.92 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=27.1
Q ss_pred cccCCccEEEEEcCCchHHHHHHhccCCCCcEEEEeC
Q 002733 640 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 676 (887)
Q Consensus 640 ~~~~~~DlVIvLGGDGTlL~Aar~~~~~~~PVLGIN~ 676 (887)
++...+|++|+-||-||++.++.. ++|++.+..
T Consensus 287 ~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~ 319 (392)
T TIGR01426 287 EILKKADAFITHGGMNSTMEALFN----GVPMVAVPQ 319 (392)
T ss_pred HHHhhCCEEEECCCchHHHHHHHh----CCCEEecCC
Confidence 455779999999999999998753 689988754
No 275
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=21.95 E-value=52 Score=33.24 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCccEEEEEcCCchHH-----HHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL-----~Aar~~~~~~~PVLGIN~G~ 678 (887)
.++|.||.-||.+... ...+.+.....|||||-+|.
T Consensus 40 ~~~dgvIl~Gg~~~~~~~~~~~~~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 40 KNPKGIILSGGPSSVYEEDAPRVDPEIFELGVPVLGICYGM 80 (181)
T ss_pred cCCCEEEECCCcccccccccchhhHHHHhcCCCEEEEcHHH
Confidence 5689999999976542 22344445689999999884
No 276
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=21.51 E-value=83 Score=35.63 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=28.2
Q ss_pred CCccEEEEEcCCchHHHHHHhccC-CCCcEEEEeC
Q 002733 643 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 643 ~~~DlVIvLGGDGTlL~Aar~~~~-~~~PVLGIN~ 676 (887)
.++|+||.+|| |+++-+++.+.. ..+|++-|.+
T Consensus 76 ~~~d~IIavGG-Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 76 QEADVIIGVGG-GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEeCC
Confidence 47899999999 999999998753 4689999976
No 277
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.33 E-value=5.8e+02 Score=27.78 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC---CcEEEeCcc
Q 002733 169 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK---KPLYLHSKE 245 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~---~PVLVHC~a 245 (887)
++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++.++++.+.+..+ -|+-+||+-
T Consensus 120 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn 198 (268)
T cd07940 120 VEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDT-VGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198 (268)
T ss_pred HHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCCCHHHHHHHHHHHHHhCCCCceeEEEEecC
Confidence 4456778998777764332111111112223445678888888755 456778899888888764433 577788876
Q ss_pred CC
Q 002733 246 GV 247 (887)
Q Consensus 246 GK 247 (887)
..
T Consensus 199 ~~ 200 (268)
T cd07940 199 DL 200 (268)
T ss_pred Cc
Confidence 55
No 278
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=21.15 E-value=1.2e+02 Score=35.01 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=43.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhHhhcCCCCccceeeeccCccccc-CCccEEEEEcCCchH-
Q 002733 580 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLH-ERVDFVACLGGDGVI- 657 (887)
Q Consensus 580 ~~VlIv~K~~~~~~~~a~~l~~~L~~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DlVIvLGGDGTl- 657 (887)
++|+|+-= +- -..+++||.+ .|..+.+-+.... .+++. ..+|.||.-||-|..
T Consensus 174 ~~i~viD~-G~-----k~ni~~~L~~-~G~~v~vvp~~~~------------------~~~i~~~~pDGIiLSgGPgdp~ 228 (358)
T TIGR01368 174 KRVVVIDF-GV-----KQNILRRLVK-RGCEVTVVPYDTD------------------AEEIKKYNPDGIFLSNGPGDPA 228 (358)
T ss_pred cEEEEEeC-Cc-----HHHHHHHHHH-CCCEEEEEcCCCC------------------HHHHHhhCCCEEEECCCCCCHH
Confidence 36776632 31 2358888865 4666665442111 11111 245999999997664
Q ss_pred -----HHHHHhccCCCCcEEEEeCCC
Q 002733 658 -----LHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 658 -----L~Aar~~~~~~~PVLGIN~G~ 678 (887)
+...+.+.. .+|||||-+|+
T Consensus 229 ~~~~~i~~i~~~~~-~~PILGIClG~ 253 (358)
T TIGR01368 229 AVEPAIETIRKLLE-KIPIFGICLGH 253 (358)
T ss_pred HHHHHHHHHHHHHc-CCCEEEECHHH
Confidence 344555545 78999998885
No 279
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.09 E-value=6.6e+02 Score=28.91 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=51.6
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002733 168 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 247 (887)
Q Consensus 168 dLa~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGK 247 (887)
-++..++.|++..+++-......+.+.....+.+...|+..+.++=. .....++++.++++.+.+..+-|+-+||+--.
T Consensus 117 ~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~ 195 (363)
T TIGR02090 117 AVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADT-VGVLTPQKMEELIKKLKENVKLPISVHCHNDF 195 (363)
T ss_pred HHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCC-CCccCHHHHHHHHHHHhcccCceEEEEecCCC
Confidence 35567778999888874332111112112234456678998888866 45678899999888886544578888887655
No 280
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.95 E-value=5.5e+02 Score=30.94 Aligned_cols=78 Identities=13% Similarity=0.082 Sum_probs=51.7
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002733 169 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 247 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGK 247 (887)
++.+++.|++..+++-.....++.+.....+.+...|...+.+|=. .....+.++.++++.+.+..+-|+=+||+--.
T Consensus 120 v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-vG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~ 197 (488)
T PRK09389 120 VEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDT-VGILTPEKTYELFKRLSELVKGPVSIHCHNDF 197 (488)
T ss_pred HHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCcCHHHHHHHHHHHHhhcCCeEEEEecCCc
Confidence 4566778998888774432112222212234556789999999876 45667888888887775555678999998665
No 281
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.72 E-value=2.9e+02 Score=30.44 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=50.6
Q ss_pred hhHHHHHHcCCcEEEEcCCCc--ccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002733 167 EGLKWLMEKGYKTIVDIRAER--VKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 244 (887)
Q Consensus 167 edLa~L~elGIKTVIDLR~e~--~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~ 244 (887)
+-++..+++|++..+++-... .-.+.+.....+.+...|+..+.++=. .....++++.+.++.+....+.|+-+||+
T Consensus 122 ~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~H 200 (275)
T cd07937 122 VAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDM-AGLLTPYAAYELVKALKKEVGLPIHLHTH 200 (275)
T ss_pred HHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 345667788998887663211 011111112334556779999888755 45667889988888876544578888887
Q ss_pred cCC
Q 002733 245 EGV 247 (887)
Q Consensus 245 aGK 247 (887)
--.
T Consensus 201 nd~ 203 (275)
T cd07937 201 DTS 203 (275)
T ss_pred CCC
Confidence 555
No 282
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.63 E-value=6.3e+02 Score=29.05 Aligned_cols=78 Identities=8% Similarity=0.101 Sum_probs=50.0
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002733 169 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 247 (887)
Q Consensus 169 La~L~elGIKTVIDLR~e~~Ee~~~~~~e~~~~~~~GI~yihIPV~d~~~ps~e~v~~flelI~d~~~~PVLVHC~aGK 247 (887)
++..++.|++..+++-....-++.+.....+.+...|...+.++=. ....++.++.++++.+.+..+-|+=+||+--.
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~ 196 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADT-VGILDPFSTYELVRALRQAVDLPLEMHAHNDL 196 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEccc-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4556678998777764332111222222234456679999888866 45678888888888875544568888887655
No 283
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=20.26 E-value=2.3e+02 Score=31.25 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=29.6
Q ss_pred cCCccEEEEEcC----C----ch---------HHHHHHhccCCCCcEEEEeCC-----CCccCC
Q 002733 642 HERVDFVACLGG----D----GV---------ILHASNLFRGAVPPVISFNLG-----SLGFLT 683 (887)
Q Consensus 642 ~~~~DlVIvLGG----D----GT---------lL~Aar~~~~~~~PVLGIN~G-----~LGFLt 683 (887)
.+.+|.||..|| | |. +..+.+.+...+.||+||-.| .+|.|-
T Consensus 46 l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLp 109 (261)
T PRK01175 46 VSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLP 109 (261)
T ss_pred hhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCC
Confidence 356899999999 2 11 124456666678999999876 477774
No 284
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.02 E-value=92 Score=32.31 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCch------------HHHHHHhccCCCCcEEEEeCCC
Q 002733 643 ERVDFVACLGGDGV------------ILHASNLFRGAVPPVISFNLGS 678 (887)
Q Consensus 643 ~~~DlVIvLGGDGT------------lL~Aar~~~~~~~PVLGIN~G~ 678 (887)
.++|.||. +|-|. +....+.+...+.|||||-.|.
T Consensus 36 ~~~d~lil-pG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 36 AGADKVIL-PGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred ccCCEEEE-CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 35799885 55343 2333444345679999999884
No 285
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=20.01 E-value=1.1e+02 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.4
Q ss_pred CccEEEEEcCCchHHHHHHhccC-CCCcEEEEeC
Q 002733 644 RVDFVACLGGDGVILHASNLFRG-AVPPVISFNL 676 (887)
Q Consensus 644 ~~DlVIvLGGDGTlL~Aar~~~~-~~~PVLGIN~ 676 (887)
++|+||.+|| |+++-+++.+.. .++|++-|.+
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPT 107 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTT 107 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecC
Confidence 6899999999 999999998753 5789998875
Done!