Query 002733
Match_columns 887
No_of_seqs 380 out of 2757
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 21:22:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002733.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_99-103//hhsearch_pdb/002733hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfn_A NAD kinase; structural 1.0 1 1 572.5 27.7 311 559-879 20-362 (365)
2 3afo_A NADH kinase POS5; alpha 1.0 1 1 531.6 27.6 332 548-885 10-381 (388)
3 1z0s_A Probable inorganic poly 1.0 1 1 458.9 21.2 247 581-879 31-277 (278)
4 1u0t_A Inorganic polyphosphate 1.0 1 1 436.2 27.5 291 578-881 3-302 (307)
5 2an1_A Putative kinase; struct 1.0 1 1 422.0 27.3 286 579-882 5-291 (292)
6 2i2c_A Probable inorganic poly 1.0 1 1 407.1 30.9 260 581-884 2-269 (272)
7 1yt5_A Inorganic polyphosphate 1.0 1 1 401.7 24.7 254 581-882 2-257 (258)
8 1ywf_A Phosphotyrosine protein 1.0 1 1 216.2 11.2 184 108-326 24-293 (296)
9 2qv7_A Diacylglycerol kinase D 1.0 1 1 174.1 10.1 254 579-863 24-318 (337)
10 1xri_A AT1G05000; structural g 1.0 1 1 161.7 12.6 126 134-278 5-134 (151)
No 1
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=572.47 Aligned_cols=311 Identities=48% Similarity=0.872 Sum_probs=270.3
Q ss_pred CCCCCCCCCHHHHHHCCCCCCCEEEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--CCCCCCCC---EE
Q ss_conf 875446982467730024689799998259925-8999999999970299849999477045762--28998631---12
Q 002733 559 SSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFA--RIPGFGFV---QT 632 (887)
Q Consensus 559 s~~~~~~~s~~~~~l~w~~~p~~VlIv~K~~~~-~~~~a~ei~~~L~~~~~i~V~ve~~~~~~~~--~~~~~~~~---~~ 632 (887)
.-+++..|++ |+|.|.++|++|+||+|++++ +.+.+.++++||.+ .+++|++|+.+++.+. ....+... ..
T Consensus 20 ~~~~~~~~~~--~~l~w~~~~k~I~iv~K~~~~~~~~~~~~l~~~L~~-~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~ 96 (365)
T 3pfn_A 20 TIMHIQDPAS--QRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLME-ENMIVYVEKKVLEDPAIASDESFGAVKKKFC 96 (365)
T ss_dssp TEEEEECTTT--CBEEESSCCCEEEEEECTTCGGGHHHHHHHHHHHHH-TSCEEEEEHHHHHSHHHHHCSTTHHHHHHCE
T ss_pred HCEEECCCCC--CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCEEEEEHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 2106438664--432068789889999517987899999999999987-8999999667844220022334432222221
Q ss_pred EECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 31157433357864999982886489999860599995999828998557888910099999999905999885036776
Q 002733 633 FYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLR 712 (887)
Q Consensus 633 ~~~~~~~~~~~~~DlVItLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ee~~~~L~~il~G~~~i~~~~i~~R 712 (887)
.+..+.+++.+++|+||+||||||||+|++++.+..+||||||+|+||||+++++++++++|+++++|+| .++.|
T Consensus 97 ~~~~~~~~~~~~~DlvI~lGGDGT~L~aa~~~~~~~~PvlGiN~G~LGFLt~~~~~~~~~~l~~vl~g~~-----~v~~R 171 (365)
T 3pfn_A 97 TFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNA-----AVVLR 171 (365)
T ss_dssp EECTTTCCCTTTCSEEEEESSTTHHHHHHHHCSSSCCCEEEEESSSCTTTCCEESTTHHHHHHHHHHSCC-----BEEEE
T ss_pred CCCCCHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECHHHHHHHHHHHHCCCC-----EEEEE
T ss_conf 2346765626578989998681899999998526799789990899753046458999999999986997-----69998
Q ss_pred EEEEEEEEEC--------------------------CEECCCCCCCCEEEEEEECCCCCEEEEEEEEECCEEEEEEEECE
Q ss_conf 6999999719--------------------------92237853210133898348997149999999999968896052
Q 002733 713 MRLCCEIFRN--------------------------GKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDG 766 (887)
Q Consensus 713 ~rL~~~V~~~--------------------------G~~~~~~~~~ALNDVvI~rg~~~~l~~i~v~idg~~l~~~rgDG 766 (887)
+||++.+.+. |+.+ ..++|||||+|.|+..++|+++++|+||+++++|+|||
T Consensus 172 ~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~ALNEvvI~r~~~~~m~~~~v~idg~~~~~~~aDG 249 (365)
T 3pfn_A 172 SRLKVRVVKELRGKKTAVHNGLGEKGSQAAGLDMDVGKQA--MQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDG 249 (365)
T ss_dssp CCEEEEEEC-----------------------------CE--EEEEESSEEEEECTTCSSCCCEEEEETTEEEEEECSSE
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--ECCCCCCEEEEECCCCCCEEEEEEEECCEEEEEEECCE
T ss_conf 6389999964566533223333333333334435699364--04472336999658877379999999999989994471
Q ss_pred EEECCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCE
Q ss_conf 35569887358661039986698998613443078988889856089997999974799971799963930001799979
Q 002733 767 VIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDS 846 (887)
Q Consensus 767 vIISTPTGSTAYslSAGGPIV~P~v~~iiiTPIcPhsLs~RPiVlp~~s~I~I~v~~~~r~~~~isiDG~~~~~L~~Gd~ 846 (887)
|||||||||||||+||||||+||++++|++||||||+|++||+|+|++++|+|++..+++..+++++||+...+|.+||+
T Consensus 250 lIVSTPTGSTAYslSAGGPIv~P~~~~i~ltPI~PhsLs~RPiVlp~~~~I~i~v~~~~~~~~~vs~DG~~~~~l~~gd~ 329 (365)
T 3pfn_A 250 VIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDS 329 (365)
T ss_dssp EEEECGGGGGTHHHHTTCCEECTTSCCEEEEEESCSSTTCCCEEECTTCCEEEEECTTCSSCEEEEETTEEEEEECTTCE
T ss_pred EEEECCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEEEEECCCCCCCEEEEECCCEEEECCCCCE
T ss_conf 89827865778887579974389988389972068766788669899987999981378885899985983255499999
Q ss_pred EEEEEECCEEEEEECCCCCCCHHHHHHHHCCCC
Q ss_conf 999970822658967999976488997611999
Q 002733 847 VRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 879 (887)
Q Consensus 847 V~I~~S~~~i~lV~~~~~~~d~f~~Lr~KL~W~ 879 (887)
|+|++|++++++|+..+...|||++|++||+.-
T Consensus 330 V~I~~s~~~~~li~~~~~~~d~f~~l~~~~~~~ 362 (365)
T 3pfn_A 330 ISITTSCYPLPSICVRDPVSDWFESLAQCLHHH 362 (365)
T ss_dssp EEEEECSSCEEEECSSCHHHHHHHHHHHHTTC-
T ss_pred EEEEECCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999988982589971799887899999987521
No 2
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=531.57 Aligned_cols=332 Identities=32% Similarity=0.560 Sum_probs=275.4
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCHH-HHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHC-C
Q ss_conf 74011122227875446982467730024689799998259925-899999999997029-98499994770457622-8
Q 002733 548 GFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPA-LMEEAKEVASFLYHQ-EKMNILVEPDVHDIFAR-I 624 (887)
Q Consensus 548 ~~~~~~~~~~~s~~~~~~~s~~~~~l~w~~~p~~VlIv~K~~~~-~~~~a~ei~~~L~~~-~~i~V~ve~~~~~~~~~-~ 624 (887)
..+|+.+..+.....+.+|+.+++.|.|.+++++|+||+|++++ +.+.+.++++||.++ .+++|++++..++.+.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~V~II~n~~~~~~~~~~~~l~~~L~~~~~gi~V~ve~~~a~~l~~~~ 89 (388)
T 3afo_A 10 IKPVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYPEVNVIVQPDVAEEISQDF 89 (388)
T ss_dssp EEEGGGSCCCCCCEEEC----CCEEEECSSCCCEEEEEECTTCHHHHHHHHHHHHHHHHHCTTCEEECCHHHHHHHHTTC
T ss_pred EEEHHHCCCCCCCCEEECCCHHHEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC
T ss_conf 01475657666866174742341152726777699999808998999999999999997379839999476666543310
Q ss_pred CCCC-----CCEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCC-CEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9986-----31123115743335786499998288648999986059999-59998289985578889100999999999
Q 002733 625 PGFG-----FVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVP-PVISFNLGSLGFLTSHPFEDYRQDLRQVI 698 (887)
Q Consensus 625 ~~~~-----~~~~~~~~~~~~~~~~~DlVItLGGDGTlL~Aar~~~~~~~-PVLGIN~GsLGFLt~~~~ee~~~~L~~il 698 (887)
+... ....++.....+..+++|+||+||||||+|+|++.+....+ ||||||+|+||||++++++++++++++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~DlVIvlGGDGTlL~aa~~~~~~~vpPiLGIN~G~lGFLt~~~~~~~~~al~~il 169 (388)
T 3afo_A 90 KSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGVSMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVI 169 (388)
T ss_dssp CSCGGGCTTSCEEEEECCHHHHHHHCSEEEEEESHHHHHHHHHTTTTSCCCCEEEEECSSCCSSCCEEGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 22223344333322334223303588889998083999999998505699829999799865477588678999999986
Q ss_pred CCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEEEEECCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHH
Q ss_conf 05999885036776699999971992237853210133898348997149999999999968896052355698873586
Q 002733 699 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAY 778 (887)
Q Consensus 699 ~G~~~i~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI~rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAY 778 (887)
+|+| .++.|+||++.+.++|+... ...+||||++|.|+..++++.+++++||+++++|+|||||||||||||||
T Consensus 170 ~g~~-----~~~~r~~L~~~v~~~~~~~~-~~~~ALNev~i~~~~~~~~~~~~v~id~~~~~~~~~DGliVsTPTGSTAY 243 (388)
T 3afo_A 170 SSRA-----KCLHRTRLECHLKKKDSNSS-IVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAY 243 (388)
T ss_dssp TTCC-----EEEEECCEEEEEECTTCCCC-EEEEESSEEEEECTTCSSCEEEEEEETTEEEEEEEEEEEEEECTGGGGTH
T ss_pred CCCC-----EEEEEEEEEEEEEECCCCCH-HHHEEECEEEEECCCCCCEEEEEEEECCEEEEEECCCEEEEECCCCHHHH
T ss_conf 6981-----69986679999971894110-01200036999538987289999999999987544886899278747899
Q ss_pred HHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEEEECCCC-----CCCEEEEECCCCCCCCCCCCEEEEEEEC
Q ss_conf 61039986698998613443078988889856089997999974799-----9717999639300017999799999708
Q 002733 779 STAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDA-----RSNAWVSFDGKRRQQLSRGDSVRIFMSE 853 (887)
Q Consensus 779 slSAGGPIV~P~v~~iiiTPIcPhsLs~RPiVlp~~s~I~I~v~~~~-----r~~~~isiDG~~~~~L~~Gd~V~I~~S~ 853 (887)
|+|||||||||.+++|++||||||+|++||+|+|+++.|+|++.... +..+++++||+...++.+||+|+|++++
T Consensus 244 slSAGGpIv~P~~~~~~ltPI~Ph~l~~RpiVl~~~~~i~i~v~~~~~~~~~~~~~~l~~DG~~~~~l~~gd~v~v~~s~ 323 (388)
T 3afo_A 244 SLSAGGSIVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDGIPQQDLDVGDEIYVINEV 323 (388)
T ss_dssp HHHTTCCEECTTSCEEEEEEEEESCSCCCCEEEETTCCEEEEECCCSSCSCSSSCEEEEETTEEEEEECTTCEEEEEESS
T ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCEECCCCCEEEEEECC
T ss_conf 97345872167877258953457756679759899977999985665555566547999769841555999899999877
Q ss_pred CEEE------------------EE--------ECCCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 2265------------------89--------67999976488997611999867888
Q 002733 854 HPIP------------------TV--------NKSDQTGDWFHSLVRCLNWNERLDQK 885 (887)
Q Consensus 854 ~~i~------------------lV--------~~~~~~~d~f~~Lr~KL~W~~r~~qk 885 (887)
..+. ++ +......+|++.|+++|+||.|.+++
T Consensus 324 ~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~~~lr~kl~W~~~~~~~l~~n~~~~~~ 381 (388)
T 3afo_A 324 GTIYIDGTQLPTTRKTENDFNNSKKPKRSGIYCVAKTENDWIRGINELLGFNSSFRLT 381 (388)
T ss_dssp CCCCCTTC------------------CCCSEEEECSSTTHHHHHHHHTTCTTCCCCCC
T ss_pred CEEEECCCCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf 4466035566542113344442210277882261111056167798665788655666
No 3
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=1.00 E-value=1 Score=458.90 Aligned_cols=247 Identities=24% Similarity=0.398 Sum_probs=221.1
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 99998259925899999999997029984999947704576228998631123115743335786499998288648999
Q 002733 581 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 660 (887)
Q Consensus 581 ~VlIv~K~~~~~~~~a~ei~~~L~~~~~i~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVItLGGDGTlL~A 660 (887)
+|+|+.|+..+ +.++.+||.+ .++++++++..++ ..+++|+||+||||||+|+|
T Consensus 31 ki~iv~~~~~~----~~~l~~~L~~-~g~~v~~~~~~~~---------------------~~~~~DlvIvlGGDGT~L~a 84 (278)
T 1z0s_A 31 RAAVVYKTDGH----VKRIEEALKR-LEVEVELFNQPSE---------------------ELENFDFIVSVGGDGTILRI 84 (278)
T ss_dssp EEEEEESSSTT----HHHHHHHHHH-TTCEEEEESSCCG---------------------GGGGSSEEEEEECHHHHHHH
T ss_pred EEEEEECCCHH----HHHHHHHHHH-CCCEEEECCCCCC---------------------CCCCCCEEEEECCCHHHHHH
T ss_conf 99999689079----9999999998-8999997142124---------------------45798899998887899999
Q ss_pred HHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEEEEE
Q ss_conf 98605999959998289985578889100999999999059998850367766999999719922378532101338983
Q 002733 661 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 740 (887)
Q Consensus 661 ar~~~~~~~PVLGIN~GsLGFLt~~~~ee~~~~L~~il~G~~~i~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVvI~ 740 (887)
+|.+... +||+|||+|++|||+++++++++++++++++ +| .++.|+||++ +.+++ .+||||++|.
T Consensus 85 a~~~~~~-~PilGIN~G~lGFLt~~~~~~~~~~l~~l~~-~~-----~i~~r~~L~~-v~~~~-------~~ALNEv~I~ 149 (278)
T 1z0s_A 85 LQKLKRC-PPIFGINTGRVGLLTHASPENFEVELKKAVE-KF-----EVERFPRVSC-SAMPD-------VLALNEIAVL 149 (278)
T ss_dssp HTTCSSC-CCEEEEECSSSCTTCCBBTTBCHHHHHHHHH-HC-----CEEEECCEEE-TTEEE-------EEESSEEEEE
T ss_pred HHHHCCC-CCEEEECCCCCCCCCCCCHHHHHHHHHHHHH-HC-----EEEEEEEEEE-EECCC-------CEEEEEEEEE
T ss_conf 9985799-8499987998763553687899999999984-08-----5988579999-97898-------2799999994
Q ss_pred CCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEEE
Q ss_conf 48997149999999999968896052355698873586610399866989986134430789888898560899979999
Q 002733 741 RGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK 820 (887)
Q Consensus 741 rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAYslSAGGPIV~P~v~~iiiTPIcPhsLs~RPiVlp~~s~I~I~ 820 (887)
|+..++++++++++||+++++|+||||||||||||||||+||||||++|++++|++||||||++++||+|+|++++|+|+
T Consensus 150 ~~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAY~lSAGGpIv~P~~~~l~ltPI~P~~l~~RpiVl~~~~~i~i~ 229 (278)
T 1z0s_A 150 SRKPAKMIDVALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVI 229 (278)
T ss_dssp ESSTTCCEEEEEEETTEEEEEEEESEEEEEESGGGGTHHHHTTCCEECTTSCCEEEEEESCCSSBCCCEEECTTSCEEEE
T ss_pred CCCCCCEEEEEEEECCEEEEEEECCEEEEECCCCHHHHHHHCCCCEECCCCCEEEEEEECCCCCCCCCEEECCCCEEEEE
T ss_conf 38876279999999999999996474999568761577751798552899985999983787777872898999789999
Q ss_pred ECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCC
Q ss_conf 74799971799963930001799979999970822658967999976488997611999
Q 002733 821 IPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWN 879 (887)
Q Consensus 821 v~~~~r~~~~isiDG~~~~~L~~Gd~V~I~~S~~~i~lV~~~~~~~d~f~~Lr~KL~W~ 879 (887)
+..+++++||+. ++.+|++|+|+++++++++ .. ..+||++|++||+|.
T Consensus 230 -----~~~~~l~~DG~~--~l~~g~~v~I~~s~~~~~l--~~--~~~f~~~Lr~Kl~w~ 277 (278)
T 1z0s_A 230 -----AEKAIVVADGQK--SVDFDGEITIEKSEFPAVF--FK--NEKRFRNLFGKVRSI 277 (278)
T ss_dssp -----EEEEEEEETTTE--EEEEEEEEEEEECSCCEEE--EC--CTTHHHHHHHHHHTC
T ss_pred -----ECCEEEEECCCE--ECCCCCEEEEEECCCEEEE--CC--CCCHHHHHHHHHCCC
T ss_conf -----676899976981--3589849999999980672--89--998999999870799
No 4
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=1.00 E-value=1 Score=436.18 Aligned_cols=291 Identities=26% Similarity=0.399 Sum_probs=244.9
Q ss_pred CCCEEEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHH--CC-C-C---CC-CCEEEECCCCCCCCCCCCEE
Q ss_conf 89799998259925-8999999999970299849999477045762--28-9-9---86-31123115743335786499
Q 002733 578 TPRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFA--RI-P-G---FG-FVQTFYLQDTSDLHERVDFV 648 (887)
Q Consensus 578 ~p~~VlIv~K~~~~-~~~~a~ei~~~L~~~~~i~V~ve~~~~~~~~--~~-~-~---~~-~~~~~~~~~~~~~~~~~DlV 648 (887)
++++|+||.|+.++ ..+.+.++.+||.+ .++++.++...++.+. .. . . .+ ....+ .......+++|+|
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~d~v 79 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVV--DADQHAADGCELV 79 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEEC-------------------------------------CCCE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEE
T ss_conf 88789999818987899999999999998-89999996343443200223432212346431002--4310124588999
Q ss_pred EEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCC
Q ss_conf 99828864899998605999959998289985578889100999999999059998850367766999999719922378
Q 002733 649 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPG 728 (887)
Q Consensus 649 ItLGGDGTlL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ee~~~~L~~il~G~~~i~~~~i~~R~rL~~~V~~~G~~~~~ 728 (887)
|++|||||+|+|++.+...++|++|||+|++|||+++.+++++++++.+++|+| .++.|++|++.+.++|+..
T Consensus 80 i~~GGDGT~l~a~~~~~~~~~pvlgi~~G~~gfl~~~~~~~~~~~~~~i~~g~~-----~~~~r~~l~~~v~~~g~~~-- 152 (307)
T 1u0t_A 80 LVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAVLEHVVAQDY-----RVEDRLTLDVVVRQGGRIV-- 152 (307)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCEEEEECSSCCSSCSEEGGGHHHHHHHHHHTCC-----EEEEECCEEEEEEETTEEE--
T ss_pred EEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-----EEEEEEEEEEEEEECCCCE--
T ss_conf 999288999999997446899799996998762763697899999999984995-----7999789999998276312--
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 53210133898348997149999999999968896052355698873586610399866989986134430789888898
Q 002733 729 KVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRP 808 (887)
Q Consensus 729 ~~~~ALNDVvI~rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAYslSAGGPIV~P~v~~iiiTPIcPhsLs~RP 808 (887)
...+||||++|.++..++++++++++||+++++|++||+||||||||||||+|||||+++|++++++++|||||+++.||
T Consensus 153 ~~~~ALNev~i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~lSaGGpiv~P~~~~~~l~pi~p~~l~~rp 232 (307)
T 1u0t_A 153 NRGWALNEVSLEKGPRLGVLGVVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRP 232 (307)
T ss_dssp EEEEESSEEEEECSSSSSCEEEEEESSSSEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCCCEEEEEESCSSSCCCC
T ss_pred ECEEEEEEEEEECCCCCEEEEEEEEECCEEEEEECCCEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC
T ss_conf 02014535898048876189999999999988872899998650066899866999823898884899741575566887
Q ss_pred EEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCC
Q ss_conf 5608999799997479997179996393000179997999997082265896799997648899761199986
Q 002733 809 VILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 881 (887)
Q Consensus 809 iVlp~~s~I~I~v~~~~r~~~~isiDG~~~~~L~~Gd~V~I~~S~~~i~lV~~~~~~~d~f~~Lr~KL~W~~r 881 (887)
+|+|++++|+|++... +..+.+++||+....+.+|+.|+|++++++++++++.+ .+||++|++||+|+..
T Consensus 233 ~v~~~~~~i~i~v~~~-~~~~~~~~DG~~~~~l~~g~~i~i~~~~~~~~li~~~~--~~~~~~l~~kl~~~~~ 302 (307)
T 1u0t_A 233 MVTSPEATIAIEIEAD-GHDALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDS--APFTDRLVRKFRLPVT 302 (307)
T ss_dssp EEECTTCCEEEEECTT-SCCEEEEETTTEEEEECTTCEEEEEECSSCEEEEECSC--CCHHHHHHHHHTCCCT
T ss_pred EEECCCCEEEEEEECC-CCCEEEEECCCEEEECCCCCEEEEEECCCEEEEEEECC--CCHHHHHHHHHCCCCC
T ss_conf 7979998799999608-98889998798688039998999999898149999599--8989999998588766
No 5
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=1.00 E-value=1 Score=421.97 Aligned_cols=286 Identities=25% Similarity=0.457 Sum_probs=244.6
Q ss_pred CCEEEEEECCCHH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHH
Q ss_conf 9799998259925-899999999997029984999947704576228998631123115743335786499998288648
Q 002733 579 PRTVLVLKKPGPA-LMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 657 (887)
Q Consensus 579 p~~VlIv~K~~~~-~~~~a~ei~~~L~~~~~i~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVItLGGDGTl 657 (887)
.++++|+.++.++ ..+.+.++.+||.+ .++++.+++..++.+. ..++ ..+ ......+.+|+||++|||||+
T Consensus 5 mkki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~---~~~---~~~~~~~~~D~vi~~GGDGT~ 76 (292)
T 2an1_A 5 FKCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVEQQIAHELQ-LKNV---PTG---TLAEIGQQADLAVVVGGDGNM 76 (292)
T ss_dssp CCEEEEECC-------CHHHHHHHHHHH-TTCEEEEEHHHHHHTT-CSSC---CEE---CHHHHHHHCSEEEECSCHHHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCEEEEECCHHHHCC-CCCC---CCC---CHHHCCCCCCEEEEECCCHHH
T ss_conf 8599999759987899999999999998-8999999524032215-4555---444---533416698899998284999
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEE
Q ss_conf 99998605999959998289985578889100999999999059998850367766999999719922378532101338
Q 002733 658 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 737 (887)
Q Consensus 658 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ee~~~~L~~il~G~~~i~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDV 737 (887)
|++++.+...++|+||||+|++|||+++.+++++++++.+++|+ +.++.|++|++.+.++|+.. ...+||||+
T Consensus 77 l~a~~~~~~~~~P~lGI~~Gt~gfla~~~~~~~~~al~~i~~g~-----~~~~~r~~l~~~~~~~~~~~--~~~~alnev 149 (292)
T 2an1_A 77 LGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVLEGR-----YISEKRFLLEAQVCQQDRQK--RISTAINEV 149 (292)
T ss_dssp HHHHHHHTTSSCEEEEBCSSSCCSSCCBCTTSHHHHHHHHHTTC-----EEEEEEEEEEEEEECC------CEEEESSEE
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC-----CEEEEEEEEEEEEEECCCEE--EEEEEEEEE
T ss_conf 99999853679989999899766378688789999999998699-----77999379999998389147--613686008
Q ss_pred EEECCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEE
Q ss_conf 98348997149999999999968896052355698873586610399866989986134430789888898560899979
Q 002733 738 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 817 (887)
Q Consensus 738 vI~rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAYslSAGGPIV~P~v~~iiiTPIcPhsLs~RPiVlp~~s~I 817 (887)
++.++..+++.++++++||++++++++||+||||||||||||+|||||+++|++++++++|||||+++.||+|++++..|
T Consensus 150 ~i~~~~~~~~~~~~v~idg~~~~~~~~dglivstptGSTay~~SaGG~iv~P~~~~~~l~pi~p~~l~~r~iv~~~~~~i 229 (292)
T 2an1_A 150 VLHPGKVAHMIEFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTI 229 (292)
T ss_dssp EEEESSTTCCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCEECTTCSEEEEEEESCSSTTCCCEEEETTCCE
T ss_pred EEECCCCCCEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEE
T ss_conf 99248987269999999999999998578999887746999976889977999886999944767677998798999879
Q ss_pred EEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 99974799971799963930001799979999970822658967999976488997611999867
Q 002733 818 ELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 882 (887)
Q Consensus 818 ~I~v~~~~r~~~~isiDG~~~~~L~~Gd~V~I~~S~~~i~lV~~~~~~~d~f~~Lr~KL~W~~r~ 882 (887)
+|++.. .+.++.+++||+....+.+|+.|+|+.++..++++++.+ .+||++|++||+||.++
T Consensus 230 ~i~~~~-~~~~~~~~~DG~~~~~~~~~~~v~i~~~~~~~~li~~~~--~~~~~~l~~kl~w~~~~ 291 (292)
T 2an1_A 230 RLRFSH-RRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKD--YSYFNTLSTKLGWSKKL 291 (292)
T ss_dssp EEEECC----CEEEEETTSCCEEECTTCEEEEEEEEEEEEEEEETT--CCHHHHHHHHHTCBCCC
T ss_pred EEEECC-CCCCEEEEECCCEEEECCCCCEEEEEECCCEEEEEEECC--CCHHHHHHHHHCCCCCC
T ss_conf 999865-887569998798679559996999999898899999699--99999999986468767
No 6
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=1.00 E-value=1 Score=407.10 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=226.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHHHH
Q ss_conf 99998259925899999999997029984999947704576228998631123115743335786499998288648999
Q 002733 581 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 660 (887)
Q Consensus 581 ~VlIv~K~~~~~~~~a~ei~~~L~~~~~i~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVItLGGDGTlL~A 660 (887)
+++|+.++.....+.+.++.+||.+ .++++- .+++|+||++|||||+|++
T Consensus 2 ki~ii~n~~~~~~~~~~~l~~~l~~-~g~~v~-----------------------------~~~~D~vv~lGGDGT~l~a 51 (272)
T 2i2c_A 2 KYMITSKGDEKSDLLRLNMIAGFGE-YDMEYD-----------------------------DVEPEIVISIGGDGTFLSA 51 (272)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTT-SSCEEC-----------------------------SSSCSEEEEEESHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH-CCCEEC-----------------------------CCCCCEEEEECCCHHHHHH
T ss_conf 8999978977899999999999998-778707-----------------------------7788899998685999999
Q ss_pred HHHCCCC--CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEEC-CEECCCCCCCCEEEE
Q ss_conf 9860599--9959998289985578889100999999999059998850367766999999719-922378532101338
Q 002733 661 SNLFRGA--VPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRN-GKAMPGKVFDVLNEV 737 (887)
Q Consensus 661 ar~~~~~--~~PVLGIN~GsLGFLt~~~~ee~~~~L~~il~G~~~i~~~~i~~R~rL~~~V~~~-G~~~~~~~~~ALNDV 737 (887)
++.+.+. ++||+|||+|++|||+++.+++++++++.+++|++ .++.|++|++.+.++ |+.. ....||||+
T Consensus 52 a~~~~~~~~~~PilGIn~G~lgfl~~~~~~~~~~~l~~l~~g~~-----~i~~r~~L~~~v~~~~g~~~--~~~~ALNev 124 (272)
T 2i2c_A 52 FHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEY-----QKVSYPLLKTTVKYGIGKKE--ATYLALNES 124 (272)
T ss_dssp HHHTGGGTTTCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCC-----EEEEEEEEEEEEEESSSCCE--EEEEESSEE
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-----EEEEEEEEEEEEEECCCCEE--EHHHHHHHH
T ss_conf 99876537999799996998775772897899999999985997-----79999879999991799288--177664376
Q ss_pred EEECCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCC-CC----CEEEC
Q ss_conf 98348997149999999999968896052355698873586610399866989986134430789888-89----85608
Q 002733 738 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLS-FR----PVILP 812 (887)
Q Consensus 738 vI~rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAYslSAGGPIV~P~v~~iiiTPIcPhsLs-~R----PiVlp 812 (887)
+|.+. ++++++++++||+++++|++||+|||||||||||++|||||+++|+++++++||||||++. +| |+|+|
T Consensus 125 ~i~~~--~~~~~~~i~idg~~~~~~~~DGlivsTptGSTaY~~SaGGpiv~P~~~~~~ltpi~p~~l~~~r~~~~p~v~~ 202 (272)
T 2i2c_A 125 TVKSS--GGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFP 202 (272)
T ss_dssp EEEES--SSCEEEEEEETTEEEEEEEESEEEEECTGGGGTHHHHTTCCCCCTTSCEEEEEEESCCCSSSCCCCCSCEEEE
T ss_pred HHCCC--CCEEEEEEEECCEEEEEEECCEEEEECCCCHHHHHHCCCCCEECCCCCCEEEECCCCCCCHHHHCCCCCEEEC
T ss_conf 20256--7179999999999999977799999716658999970899755778784687678776310002048967929
Q ss_pred CCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999799997479997179996393000179997999997082265896799997648899761199986788
Q 002733 813 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERLDQ 884 (887)
Q Consensus 813 ~~s~I~I~v~~~~r~~~~isiDG~~~~~L~~Gd~V~I~~S~~~i~lV~~~~~~~d~f~~Lr~KL~W~~r~~q 884 (887)
++++|+|++.. +..+.+++||+. ..+.+++.|+|++++..++++.+.+ .+||++|++||+|+....+
T Consensus 203 ~~~~i~i~~~~--~~~~~~~~DG~~-~~~~~~~~v~i~~~~~~~~~i~~~~--~~f~~~l~~kl~~~~~~~~ 269 (272)
T 2i2c_A 203 KHHVVSLQPVN--DKDFQISVDHLS-ILHRDVQEIRYEVSAKKIHFARFRS--FPFWRRVHDSFIEDLEHHH 269 (272)
T ss_dssp TTCCEEEEESS--CCCEEEEETTEE-EEECSEEEEEEEEEEEEEEEEECSC--CCHHHHHHHHHTCC-----
T ss_pred CCCEEEEEECC--CCCEEEEECCCE-EECCCCCEEEEEECCCEEEEEEECC--CCHHHHHHHHHCCCCCCCC
T ss_conf 99889999867--998899987989-1059998999999588799999499--9989999998578863445
No 7
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=401.68 Aligned_cols=254 Identities=22% Similarity=0.318 Sum_probs=216.4
Q ss_pred EEEEEECCCHHH--HHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCHHH
Q ss_conf 999982599258--999999999970299849999477045762289986311231157433357864999982886489
Q 002733 581 TVLVLKKPGPAL--MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 658 (887)
Q Consensus 581 ~VlIv~K~~~~~--~~~a~ei~~~L~~~~~i~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVItLGGDGTlL 658 (887)
+++|+.+|.... .+.+.++.++|. ++++.. . + ....+++|+||++|||||+|
T Consensus 2 ki~ii~Np~~~~~~~~~~~~i~~~l~---~~~~~~-~---------------------~-~~~~~~~D~vv~~GGDGTll 55 (258)
T 1yt5_A 2 KIAILYREEREKEGEFLKEKISKEHE---VIEFGE-A---------------------N-APGRVTADLIVVVGGDGTVL 55 (258)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTTTSE---EEEEEE-S---------------------S-SCSCBCCSEEEEEECHHHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHC---CCCEEC-C---------------------C-CCCCCCCCEEEEEECCHHHH
T ss_conf 89999708981689999999999851---780531-5---------------------5-23467989999992848999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCEECCCCCCCCEEEEE
Q ss_conf 99986059999599982899855788891009999999990599988503677669999997199223785321013389
Q 002733 659 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 738 (887)
Q Consensus 659 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ee~~~~L~~il~G~~~i~~~~i~~R~rL~~~V~~~G~~~~~~~~~ALNDVv 738 (887)
++++.+.. .+|++|||+|++|||+++.++++.++++++++|++ .++.|++|++.+.+ . ..+||||++
T Consensus 56 ~~a~~~~~-~~PilGIn~G~~Gfl~~~~~~~~~~al~~i~~g~~-----~i~~r~~l~~~~~~--~-----~~~alNev~ 122 (258)
T 1yt5_A 56 KAAKKAAD-GTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNF-----REETRWFIQIESEL--G-----NHLALNDVT 122 (258)
T ss_dssp HHHTTBCT-TCEEEEEESSSCCSSCCBCGGGHHHHHHHHHTTCC-----EEEEEEEEEEEETT--E-----EEEESSEEE
T ss_pred HHHHHHCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC-----EEEEEEEEEEEECC--C-----CCEEEEEEE
T ss_conf 99998379-99899997999872673787899999999975992-----69998899999958--8-----303555789
Q ss_pred EECCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEE
Q ss_conf 83489971499999999999688960523556988735866103998669899861344307898888985608999799
Q 002733 739 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 818 (887)
Q Consensus 739 I~rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAYslSAGGPIV~P~v~~iiiTPIcPhsLs~RPiVlp~~s~I~ 818 (887)
|.++...++.++++++||++++++++||+||||||||||||+|||||+++|++++++++|||||+++.||+|+|++++|+
T Consensus 123 i~~~~~~~~~~~~v~idg~~~~~~~~dGlivsTptGSTaY~~SaGGpiv~P~~~~~~i~pi~p~~l~~rp~v~~~~~~i~ 202 (258)
T 1yt5_A 123 LERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVV 202 (258)
T ss_dssp EECCTTSCCEEEEEEETTSCCEEEEESEEEEECTGGGGTTTTTTTCCCCCTTCCEEEEEEESCSTTCCCCEEEETTSCEE
T ss_pred EECCCCCCEEEEEEEECCEEEEEEECCEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCEEE
T ss_conf 70378873699999999999999973579997278737777407996048888989999765323568878989998899
Q ss_pred EEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9974799971799963930001799979999970822658967999976488997611999867
Q 002733 819 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNERL 882 (887)
Q Consensus 819 I~v~~~~r~~~~isiDG~~~~~L~~Gd~V~I~~S~~~i~lV~~~~~~~d~f~~Lr~KL~W~~r~ 882 (887)
|++. .++.+++||+....+.+ |+|+.++.+++++.+.+ ++||++|++||+||.+.
T Consensus 203 i~~~----~~~~~~~DG~~~~~~~~---i~i~~~~~~~~li~~~~--~~~~~~l~~kl~w~~~~ 257 (258)
T 1yt5_A 203 VESQ----RDINMLVDGVLTGKTKR---IEVKKSRRYVRILRPPE--YDYVTVIRDKLGYGRRI 257 (258)
T ss_dssp EEEE----EEEEEEETTEEEEEEEE---EEEEEEEEEEEEEECTT--CCHHHHHHHHHCCSCC-
T ss_pred EEEC----CCEEEEECCCCCEEEEE---EEEEECCCEEEEEECCC--CCHHHHHHHHCCCCCCC
T ss_conf 9988----98899988983316679---99999897699998599--99899999871788667
No 8
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*
Probab=1.00 E-value=1 Score=216.25 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=141.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCC---CHHHHHHHHHCCCCEEEECC
Q ss_conf 888753200235898889999976566662235843787654467973319974999---97429999975983999869
Q 002733 108 RKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTFCRGGQV---TEEGLKWLMEKGYKTIVDIR 184 (887)
Q Consensus 108 rkl~rl~n~~~d~g~p~~~gyp~~t~~~Nf~~V~~s~~~~~~~~~~~e~~LyRSGqp---T~edL~~Lk~lGIKTVIDLR 184 (887)
..|+...||++.+|||.. |. .++||||++| +++++++|+++||+||||||
T Consensus 24 l~l~g~~NfRDlGGy~t~--------------vr-------------~G~lyRS~~l~~lt~~d~~~L~~lGI~tVIDLR 76 (296)
T 1ywf_A 24 RELPGAWNFRDVADTATA--------------LR-------------PGRLFRSSELSRLDDAGRATLRRLGITDVADLR 76 (296)
T ss_dssp CCCTTCCSCEEGGGTCTT--------------SC-------------TTSEEEESCCTTCCHHHHHHHHHHTCCEEEECC
T ss_pred CCCCCCCCCCCCCCCCCC--------------CC-------------CCCEECCCCCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 058998836457886224--------------36-------------762323577453999999999967998899892
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCC-------C-------------------C------------------
Q ss_conf 8842686205665875311994999971689999-------9-------------------9------------------
Q 002733 185 AERVKDNFYEAAIDDAILSGKVELIKIPVEVRTA-------P-------------------T------------------ 220 (887)
Q Consensus 185 ~e~~e~~~y~~~e~e~~~~~GI~yihIPV~d~~~-------P-------------------s------------------ 220 (887)
++. |.... .......|++|+|+|+.+... | .
T Consensus 77 ~~~-E~~~~----~pd~~~~Gi~~~~iPi~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~m~~~Y~ 151 (296)
T 1ywf_A 77 SSR-EVARR----GPGRVPDGIDVHLLPFPDLADDDADDSAPHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYR 151 (296)
T ss_dssp CHH-HHHHH----CSCCCCTTCEEEECCCCCSCC-------------------------------CCCHHHHHHHHHHHH
T ss_pred CHH-HHHCC----CCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHH
T ss_conf 856-62113----8987878877999337664332112344203678888641012233100110011008999999999
Q ss_pred --------HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCHHH-------
Q ss_conf --------99999999998649999698808469994999999999984999989999731022022445243-------
Q 002733 221 --------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTR------- 285 (887)
Q Consensus 221 --------~e~i~~fleiI~d~~~~PVLVHC~aGKDRTG~lvAlll~~~Gvs~eeal~dyl~s~~~~~~~~~~------- 285 (887)
...+.++++.+. . ++|+||||++||||||+++++++..+|++.++|++||+++|.++....+.
T Consensus 152 ~~~~~~~~~~~~~~~l~~l~-~-~~pvl~HC~aGkDRTG~~~alll~~~g~~~~~I~~DY~~Tn~~~~~~~~~~~~~~~~ 229 (296)
T 1ywf_A 152 QFPTRNGAQRALHRVVTLLA-A-GRPVLTHCFAGKDRTGFVVALVLEAVGLDRDVIVADYLRSNDSVPQLRARISEMIQQ 229 (296)
T ss_dssp HGGGSTTHHHHHHHHHHHHH-T-TCCEEEECSSSSSHHHHHHHHHHHHTTCCHHHHHHHHHGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHCCHHHHHHHHHHHHHC-C-CCCEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99853236899999999754-4-898898788877650489999999819999999999999998799999999999875
Q ss_pred -------------H-----HCC------CCCCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -------------3-----001------2221011345521403343542103566212231011
Q 002733 286 -------------T-----RKL------KASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVD 326 (887)
Q Consensus 286 -------------~-----~~l------~m~~~~~~l~~~~g~~e~~~~~~~~~~~~~~~~~r~~ 326 (887)
. .++ .|.+++..++++|||+++|+++. |+++.+++++|..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~yGs~~~YL~~~-Gl~~~~i~~LR~~ 293 (296)
T 1ywf_A 230 RFDTELAPEVVTFTKARLSDGVLGVRAEYLAAARQTIDETYGSLGGYLRDA-GISQATVNRMRGV 293 (296)
T ss_dssp TTTSCCCHHHHHHHHTTTCHHHHSCCHHHHHHHHHHHHHHHSSHHHHHHHT-TCCHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 213333425777642332124506689999999999999809999999886-9999999999998
No 9
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=1.00 E-value=1 Score=174.07 Aligned_cols=254 Identities=13% Similarity=0.117 Sum_probs=171.2
Q ss_pred CCEEEEEECCCHH---HHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHCCCCCCCCEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9799998259925---899999999997029984999947704-576228998631123115743335786499998288
Q 002733 579 PRTVLVLKKPGPA---LMEEAKEVASFLYHQEKMNILVEPDVH-DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 654 (887)
Q Consensus 579 p~~VlIv~K~~~~---~~~~a~ei~~~L~~~~~i~V~ve~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~DlVItLGGD 654 (887)
.++++||.+|... ..+.+.++..+|.+ .++++.+..... ..... + ......+.+|+||++|||
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t~~~~~a~~---------~---~~~~~~~~~d~vvv~GGD 90 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYATEKIGDATL---------E---AERAMHENYDVLIAAGGD 90 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEECCSTTHHHH---------H---HHHHTTTTCSEEEEEECH
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHH---------H---HHHHHHCCCCEEEEECCC
T ss_conf 043999999877897168999999999998-598489999457644999---------9---999866699999998576
Q ss_pred CHHHHHHHHC--CCCCCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHCCCCC-CCCEEEEEEEEE-EEEEEECCEE---
Q ss_conf 6489999860--599995999828998557888--910099999999905999-885036776699-9999719922---
Q 002733 655 GVILHASNLF--RGAVPPVISFNLGSLGFLTSH--PFEDYRQDLRQVIYGNNT-LDGVYITLRMRL-CCEIFRNGKA--- 725 (887)
Q Consensus 655 GTlL~Aar~~--~~~~~PVLGIN~GsLGFLt~~--~~ee~~~~L~~il~G~~~-i~~~~i~~R~rL-~~~V~~~G~~--- 725 (887)
||++.+++.+ .+..+|+.+|++|+.+||+.. -+.++.++++.+++|++. +|-..+..|..+ .+.+--+.+.
T Consensus 91 GTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~g~~~~iD~g~v~~r~fl~~~~~G~~a~v~~~ 170 (337)
T 2qv7_A 91 GTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYE 170 (337)
T ss_dssp HHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHHTCEEEEEEEEETTEEESSEEEEECBCC----
T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCHHHHHH
T ss_conf 08999999997479997189964876748999739999999999999719808987999889999999643426999988
Q ss_pred -------CCCC---CCCCEEEEEEECCCCCEEEEEEEEECCEEEEEEEECEEEECCCCCHHHHHHCCCCCCCCC------
Q ss_conf -------3785---321013389834899714999999999996889605235569887358661039986698------
Q 002733 726 -------MPGK---VFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHP------ 789 (887)
Q Consensus 726 -------~~~~---~~~ALNDVvI~rg~~~~l~~i~v~idg~~l~~~rgDGvIISTPTGSTAYslSAGGPIV~P------ 789 (887)
..+. ...+||+++- .+...+++++||+. +++|+++|++++||+ ++||+++.|
T Consensus 171 ~~~~~k~~~G~~~Y~~~~l~~l~~-----~~~~~~~i~~dg~~---~~~~~~~v~v~n~~~----~gGg~~i~P~a~~~D 238 (337)
T 2qv7_A 171 TPSKLKSIVGPFAYYIKGFEMLPQ-----MKAVDLRIEYDGNV---FQGEALLFFLGLTNS----MAGFEKLVPDAKLDD 238 (337)
T ss_dssp ---------CGGGSCCCTTTTGGG-----BCCEEEEEEETTEE---EEEEEEEEEEESSCC----CSSCSCSSTTCCSSS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCEE---EEEEEEEEEEECCCC----CCCCCCCCCCCCCCC
T ss_conf 669877526839999999999973-----78841899999989---981389999999877----777874399996888
Q ss_pred -CCCCCEEEECCCCCC-CCCCEEECCC----CEE------EEEECCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCEEE
Q ss_conf -998613443078988-8898560899----979------9997479997179996393000179997999997082265
Q 002733 790 -NVPCMLFTPICPHSL-SFRPVILPDS----ARL------ELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIP 857 (887)
Q Consensus 790 -~v~~iiiTPIcPhsL-s~RPiVlp~~----s~I------~I~v~~~~r~~~~isiDG~~~~~L~~Gd~V~I~~S~~~i~ 857 (887)
.++.++++|+||+.+ ..+|.+++.. ..| +|++... ....+.+||+... .+.++|+..+..++
T Consensus 239 G~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~i~~~--~~~~~~iDGE~~~----~~~i~i~v~p~~l~ 312 (337)
T 2qv7_A 239 GYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSF--TDLQLNVDGEYGG----KLPANFLNLERHID 312 (337)
T ss_dssp SCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEEEECS--SCCEEEETTEEEE----ESCEEEEEEEEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEC--CCCEEEECCCCCC----CCCEEEEEECCEEE
T ss_conf 85899998269999999999998669866789889999669999989--9986887898689----97679999858079
Q ss_pred EEECCC
Q ss_conf 896799
Q 002733 858 TVNKSD 863 (887)
Q Consensus 858 lV~~~~ 863 (887)
++.+.+
T Consensus 313 v~~p~~ 318 (337)
T 2qv7_A 313 VFAPND 318 (337)
T ss_dssp EECCTT
T ss_pred EEECCC
T ss_conf 993386
No 10
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=1.00 E-value=1 Score=161.67 Aligned_cols=126 Identities=17% Similarity=0.223 Sum_probs=105.4
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEC
Q ss_conf 66622358437876544679733199749999742999997598399986988426862056658753119949999716
Q 002733 134 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 213 (887)
Q Consensus 134 ~~Nf~~V~~s~~~~~~~~~~~e~~LyRSGqpT~edL~~Lk~lGIKTVIDLR~e~~e~~~y~~~e~e~~~~~GI~yihIPV 213 (887)
..||+.|. +.||||++|++++++.|+++||++|||||++. +.. ...++++..|++|+|+|+
T Consensus 5 p~n~~~v~--------------~~l~~s~~~~~~d~~~L~~~gi~~Vi~l~~~~-e~~----~~~~~~~~~gi~~~~ipi 65 (151)
T 1xri_A 5 PLNFSMVD--------------NGIFRSGFPDSANFSFLQTLGLRSIIYLCPEP-YPE----SNLQFLKSNGIRLFQFGI 65 (151)
T ss_dssp CTTCEEEE--------------TTEEEESCCCHHHHHHHHHHTCSEEEECCSSC-CCH----HHHHHHHHHTCEEEECCC
T ss_pred CCCCCEEC--------------CCEEECCCCCCCCHHHHHHCCCCEEEECCCCC-CCH----HHHHHHHHCCCEEEECCC
T ss_conf 75737557--------------98277899681288999878998899788987-673----688999865985996262
Q ss_pred CCCC----CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCC
Q ss_conf 8999----9999999999999864999969880846999499999999998499998999973102202
Q 002733 214 EVRT----APTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 278 (887)
Q Consensus 214 ~d~~----~Ps~e~i~~fleiI~d~~~~PVLVHC~aGKDRTG~lvAlll~~~Gvs~eeal~dyl~s~~~ 278 (887)
.+.. .++.+++.++++++.+..++||||||++|+||||+++++++.+.|++.++|+++|...++.
T Consensus 66 ~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~aG~~RTg~~~a~~l~~~g~~~~~a~~~~~~~~~~ 134 (151)
T 1xri_A 66 EGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFAAA 134 (151)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 114576655799999999999975899878988898997899999999998099999999999985588
Done!