RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 002733
(887 letters)
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase;
2.70A {Homo sapiens}
Length = 365
Score = 391 bits (1007), Expect = e-129
Identities = 145/357 (40%), Positives = 217/357 (60%), Gaps = 38/357 (10%)
Query: 555 KVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILV 613
+ ++ + P++Q+ L W +P++VLV+KK +L++ KE+ + L +E M + V
Sbjct: 16 QNPQTIMHIQDPASQR--LTWNKSPKSVLVIKKMRDASLLQPFKELCTHL-MEENMIVYV 72
Query: 614 EPDVHD--IFARIPGFGFVQ---TFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAV 668
E V + A FG V+ + +D D+ ++DF+ CLGGDG +L+AS+LF+G+V
Sbjct: 73 EKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSV 132
Query: 669 PPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAM-- 726
PPV++F+LGSLGFLT FE+++ + QVI GN + LR RL + + +
Sbjct: 133 PPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGN-----AAVVLRSRLKVRVVKELRGKKT 187
Query: 727 ----------------------PGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQG 764
+ VLNEVV+DRG + YLS ++ Y LIT VQG
Sbjct: 188 AVHNGLGEKGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQG 247
Query: 765 DGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDD 824
DGVIV+TPTGSTAY+ AAG SM+HPNVP ++ TPICPHSLSFRP+++P L++ + +
Sbjct: 248 DGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPE 307
Query: 825 ARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNWNER 881
AR+ AWVSFDG++RQ++ GDS+ I S +P+P++ D DWF SL +CL+ +
Sbjct: 308 ARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCLHHHHH 364
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding,
mitochondrion NADP, nucleotide-binding, transferase,
transit peptide; HET: NAI; 2.00A {Saccharomyces
cerevisiae}
Length = 388
Score = 381 bits (979), Expect = e-124
Identities = 112/376 (29%), Positives = 178/376 (47%), Gaps = 46/376 (12%)
Query: 550 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPG-PALMEEAKEVASFLYHQEK 608
N + + S+ + P+++ Q L+W+ + V + KKP P+ E E + L+
Sbjct: 12 PVNNLRSSSSADFVSPPNSKLQSLIWQNPLQNVYITKKPWTPSTREAMVEFITHLHESYP 71
Query: 609 -MNILVEPDVHDIFARIPGF------GFVQTFYLQDTSDLHERVDFVACLGGDGVILHAS 661
+N++V+PDV + ++ Y D+ R D + LGGDG ILH
Sbjct: 72 EVNVIVQPDVAEEISQDFKSPLENDPNRPHILYTGPEQDIVNRTDLLVTLGGDGTILHGV 131
Query: 662 NLFRG-AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF 720
++F VPPV++F LG+LGFL+ F+++++ ++VI R RL C +
Sbjct: 132 SMFGNTQVPPVLAFALGTLGFLSPFDFKEHKKVFQEVISSR-----AKCLHRTRLECHLK 186
Query: 721 RNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYST 780
+ V +N++ + RG++P+L+ ++ + +T+ DGV +ATPTGSTAYS
Sbjct: 187 KKDS-NSSIVTHAMNDIFLHRGNSPHLTNLDIFIDGEFLTRTTADGVALATPTGSTAYSL 245
Query: 781 AAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKI-----PDDARSNAWVSFDG 835
+AGGS+V P VP +L TPICP SLSFRP+ILP S+ + +KI S +S DG
Sbjct: 246 SAGGSIVSPLVPAILMTPICPRSLSFRPLILPHSSHIRIKIGSKLNQKPVNSVVKLSVDG 305
Query: 836 KRRQQLSRGDSVRIFMSEHPI-------PTVNKS-------------------DQTGDWF 869
+Q L GD + + I PT K+ DW
Sbjct: 306 IPQQDLDVGDEIYVINEVGTIYIDGTQLPTTRKTENDFNNSKKPKRSGIYCVAKTENDWI 365
Query: 870 HSLVRCLNWNERLDQK 885
+ L +N
Sbjct: 366 RGINELLGFNSSFRLT 381
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium}
Length = 292
Score = 240 bits (616), Expect = 4e-73
Identities = 72/304 (23%), Positives = 145/304 (47%), Gaps = 19/304 (6%)
Query: 580 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDT 638
+ + ++ P P + + + +L + ++VE + ++
Sbjct: 6 KCIGIVGHPRHPTALTTHEMLYRWL-CDQGYEVIVEQQIAHEL-QLKNVPTG------TL 57
Query: 639 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 698
+++ ++ D +GGDG +L A+ VI N G+LGFLT ++ Q L V+
Sbjct: 58 AEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDLDPDNALQQLSDVL 117
Query: 699 YGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 758
G + R L ++ + + ++ +NEVV+ G ++ + E Y +
Sbjct: 118 EGRYISE-----KRFLLEAQVCQQDR--QKRISTAINEVVLHPGKVAHMIEFEVYIDETF 170
Query: 759 ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 818
+ DG+I++TPTGSTAYS +AGG ++ P++ + P+ PH+LS RP+++ S+ +
Sbjct: 171 AFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVINSSSTIR 230
Query: 819 LKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNW 878
L+ RS+ +S D + + G+ V I ++ + ++ D +F++L L W
Sbjct: 231 LRFSHR-RSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDY--SYFNTLSTKLGW 287
Query: 879 NERL 882
+++L
Sbjct: 288 SKKL 291
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich,
structural genomics, PSI, protein structure initiative;
2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB:
1u0r_A 1y3i_A* 1y3h_A
Length = 307
Score = 224 bits (572), Expect = 1e-66
Identities = 77/312 (24%), Positives = 129/312 (41%), Gaps = 18/312 (5%)
Query: 577 TTPRTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDV------HDIFARIPGFGF 629
T R+VL++ G E A+ V L K+ + V +
Sbjct: 2 TAHRSVLLVVHTGRDEATETARRVEKVL-GDNKIALRVLSAEAVDRGSLHLAPDDMRAMG 60
Query: 630 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 689
V+ + + + V LGGDG L A+ L R A PV+ NLG +GFL E
Sbjct: 61 VEIEVVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEA 120
Query: 690 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 749
L V+ + ++ R+ L + + G+ + LNEV +++G +
Sbjct: 121 IDAVLEHVVAQDYRVE-----DRLTLDVVVRQGGRIV--NRGWALNEVSLEKGPRLGVLG 173
Query: 750 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 809
+ R ++ DGV+V+TPTGSTAY+ +AGG ++ P++ +L P H+L RP+
Sbjct: 174 VVVEIDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPM 233
Query: 810 ILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWF 869
+ A + ++I D +A V DG+R + G + + + +
Sbjct: 234 VTSPEATIAIEIEADGH-DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSA--PFT 290
Query: 870 HSLVRCLNWNER 881
LVR
Sbjct: 291 DRLVRKFRLPVT 302
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta
domain2: beta sandwich, structural genomics, PSI,
protein structure initiative; 2.30A {Thermotoga
maritima}
Length = 258
Score = 214 bits (546), Expect = 1e-63
Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 22/250 (8%)
Query: 634 YLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 693
+ + + D + +GGDG +L A+ P ++ F G LGFLTS+ ++ +
Sbjct: 31 FGEANAPGRVTADLIVVVGGDGTVLKAAKKAADGTP-MVGFKAGRLGFLTSYTLDEIDRF 89
Query: 694 LRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 753
L + N + R + E LN+V ++R + + +IE
Sbjct: 90 LEDLRNWNFREE-----TRWFIQIESELGN-------HLALNDVTLERDLSGKMVEIEVE 137
Query: 754 EHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPD 813
DGV+++TPTGSTAYS + GG ++ P + +PI P R V++P
Sbjct: 138 VEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPS 197
Query: 814 SARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLV 873
+ ++ ++ D + DG + + + S + + + D+ +
Sbjct: 198 NFKVVVESQRDIN----MLVDG---VLTGKTKRIEVKKSRRYVRILRPPEY--DYVTVIR 248
Query: 874 RCLNWNERLD 883
L + R++
Sbjct: 249 DKLGYGRRIE 258
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding,
structural genomics, NADP, PSI, protein structure
initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus}
SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Length = 278
Score = 204 bits (521), Expect = 7e-60
Identities = 64/292 (21%), Positives = 107/292 (36%), Gaps = 33/292 (11%)
Query: 594 EEAKEVASFLYHQEK----MNILVEPDVHDIFARIPGFG---FVQTFYLQDTSDLHERVD 646
+ LY Q M V RI V+ S+ E D
Sbjct: 11 DYDIPTTENLYFQGGGGGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEELENFD 70
Query: 647 FVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDG 706
F+ +GGDG IL + P + N G +G LT E++ +L++ ++
Sbjct: 71 FIVSVGGDGTILRILQKLKRCPP-IFGINTGRVGLLTHASPENFEVELKKA------VEK 123
Query: 707 VYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDG 766
+ R+ C + A LNE+ V + + + +++ DG
Sbjct: 124 FEVERFPRVSCSAMPDVLA--------LNEIAVLSRKPAKMIDVALRVDGVEVDRIRCDG 175
Query: 767 VIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPDDAR 826
IVAT GST Y+ +AGG +V P + C + PI P ++P ++ ++E+
Sbjct: 176 FIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPYVVSMERKIEVIA----- 230
Query: 827 SNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLNW 878
A V DG ++ + + I SE P F +L +
Sbjct: 231 EKAIVVADG--QKSVDFDGEITIEKSEFPAVFFKNE----KRFRNLFGKVRS 276
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of
lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria
monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A*
2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A*
3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A*
3v8r_A*
Length = 272
Score = 183 bits (466), Expect = 3e-52
Identities = 47/264 (17%), Positives = 92/264 (34%), Gaps = 22/264 (8%)
Query: 629 FVQTFYLQDTSDLHERVDFVACLGGDGVILHASNL--FRGAVPPVISFNLGSLGFLTSHP 686
+ F D + V +GGDG L A + R I + G LGF
Sbjct: 20 MIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWR 79
Query: 687 FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPY 746
+ + ++ + G L + + LNE V
Sbjct: 80 PAEADKLVKLLAKGEYQKVS-----YPLLKTTVKYGIGKKEAT-YLALNESTVKSSGG-- 131
Query: 747 LSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICP----- 801
++ +D + +GDG+ ++TP+G+TAY+ + GG+++HP++ M T +
Sbjct: 132 PFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRV 191
Query: 802 HSLSFRPVILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNK 861
+ P++ P + L+ +D + +S D +R +S I
Sbjct: 192 YRTIGSPLVFPKHHVVSLQPVND--KDFQISVDH-LSILHRDVQEIRYEVSAKKIHFARF 248
Query: 862 SDQTGDWFHSLVRCLNWNERLDQK 885
++ + + L+
Sbjct: 249 RSF--PFWRRVHDSFIED--LEHH 268
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 70.8 bits (173), Expect = 2e-14
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 157 TFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR 216
G E+ L + G ++++ + KD + + ++ + IPV+
Sbjct: 21 QLLSSGLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPD--EGKLVTQAGMDYVYIPVD-W 77
Query: 217 TAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQY 260
P +E VE F + + K + +H +R A ++
Sbjct: 78 QNPKVEDVEAFFAAMDQHKGKDVLVHCLAN-YRASAFAYLYQLK 120
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 5e-12
Identities = 109/676 (16%), Positives = 191/676 (28%), Gaps = 259/676 (38%)
Query: 183 IRAERVKDNFY--------EAAIDDAILSGKVEL-------IKIPVEVRTAPTMEQVEKF 227
A ++++ F A DD + EL + VE +QV
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTT-PAELVGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 228 A---------------SLVSN-SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQ 271
+L + + L + + + Y AR ++
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--------ITARIMAKRP-F 137
Query: 272 TITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRN 331
SN L + G L +FG G
Sbjct: 138 DKKSNSALFR--------AVGEGNAQL---V--------------AIFG-G--------- 162
Query: 332 QSNG------------AYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPFKAQVPPSNF 379
Q N Y L V + + +L D K N
Sbjct: 163 QGNTDDYFEELRDLYQTYHVL-----VGDL--IKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 380 VSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLPSEIVSSGPVSGVAETRYSQWSLSGNNLS 439
+ + + + +P + + L S + S P+ GV + + + ++ L
Sbjct: 216 LE------WLENPSNTPDKDY---------LLSIPI-SCPLIGV--IQLAHYVVTAKLLG 257
Query: 440 PNHQNLPA---GSEKSSDNNGYVSAGC-----STNGFDRGDRSSMT-------EANLLTS 484
L + G+ + + G V+A S F R ++T
Sbjct: 258 FTPGELRSYLKGA--TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 485 VTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLV 544
T +L ++ S ++ + G PS P M + + ++++ + ++
Sbjct: 316 NT-SLPPSILEDS---LENNEGVPS--------P----MLS-----ISNLTQEQVQDYVN 354
Query: 545 RTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLY 604
+T+ ++V E SL + ++V GP S LY
Sbjct: 355 KTNSHLPAGKQV-EISL--------------VNGAKNLVV---SGPP--------QS-LY 387
Query: 605 HQEKMNILVE----PDVHDIFARIPGFG-----FVQTF----------YLQDTSDLHERV 645
+N+ + P D +RIP F F F L SDL
Sbjct: 388 G---LNLTLRKAKAPSGLDQ-SRIP-FSERKLKFSNRFLPVASPFHSHLLVPASDL---- 438
Query: 646 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLD 705
L + V +A ++ + PV GS DLR L
Sbjct: 439 -INKDLVKNNVSFNAKDI---QI-PVYDTFDGS--------------DLR-------VLS 472
Query: 706 GVYITLRMRLCCEIFRNGKAMPGKV-FDVLNEV----VVD--RGSNPYLSKIECYEHDRL 758
G ++ R+ I R +P V ++ + ++D G L L
Sbjct: 473 G---SISERIVDCIIR----LP--VKWETTTQFKATHILDFGPGGASGLGV--------L 515
Query: 759 ITK-VQGDG--VIVAT 771
+ G G VIVA
Sbjct: 516 THRNKDGTGVRVIVAG 531
Score = 57.0 bits (137), Expect = 3e-08
Identities = 106/626 (16%), Positives = 187/626 (29%), Gaps = 245/626 (39%)
Query: 357 GSLGTTFSKETDPFKAQVPPSNFVSKKEMSRFFRS-------------KTTSPP----RY 399
GSL VP ++F ++ F + T+P ++
Sbjct: 14 GSLEHVLL---------VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 400 FNYQSKRMDVLPSEIVSSGPVSGVA----ETRYSQWSLSGNNLSPNH---QNLPAGSEKS 452
Y S ++ PS++ V + E Y L GN++ H L ++ +
Sbjct: 65 LGYVSSLVE--PSKVGQFDQVLNLCLTEFENCY----LEGNDI---HALAAKLLQENDTT 115
Query: 453 SDNNG-----YVSAGCSTN-GFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDV---QR 503
Y++A FD+ S+ L +V + ++ + + Q
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSA-----LFRAVGEG------NAQLVAIFGGQ- 163
Query: 504 SNGKPSNSGD--DDL-------GPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNRE 554
G N+ D ++L +VG++ S + R + V T G
Sbjct: 164 --G---NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----- 213
Query: 555 KVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVE 614
+L W L+ P
Sbjct: 214 ----------------NILEW---------LENPSNT----------------------- 225
Query: 615 PDVHDIFARI----PGFGFVQ-TFYLQDTSDLHERVDFVAC--LGGDGVILHASNL---F 664
PD D I P G +Q Y+ V LG L
Sbjct: 226 PDK-DYLLSIPISCPLIGVIQLAHYV------------VTAKLLG-----FTPGELRSYL 267
Query: 665 RGA---VPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF- 720
+GA +++ ++ + +E + +R+ I L +I +R C E +
Sbjct: 268 KGATGHSQGLVT----AVAIAETDSWESFFVSVRKAI---TVL--FFIGVR---CYEAYP 315
Query: 721 -------------RNGKAMPG---KVFDVLNEVV---VDRGSNPYLSKIECYEHDRL-IT 760
N + +P + ++ E V V++ +N +L ++ I+
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSHLP-----AGKQVEIS 369
Query: 761 KVQG-DGVIVATPTGS------TAYSTAAGGSMVHPNVP--------CMLFTPI-CP-HS 803
V G ++V+ P S T A + +P F P+ P HS
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 804 LSFRPV---ILPDSARL-------ELKIPDDARSNAWV--SFDGKRRQQLSRGDSVRIF- 850
P I D + +++IP V +FDG + LS S RI
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIP--------VYDTFDGSDLRVLSGSISERIVD 481
Query: 851 -MSEHPI--PTVNKSDQTGDWFHSLV 873
+ P+ T + T H L
Sbjct: 482 CIIRLPVKWETTTQFKAT----HILD 503
Score = 54.7 bits (131), Expect = 1e-07
Identities = 67/425 (15%), Positives = 120/425 (28%), Gaps = 151/425 (35%)
Query: 546 TDGFSCNREKVTESSLA-----FTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVA 600
T+GF+ + E T + L + + + VL + E +
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPS-----KVGQFDQVLN----LCLTEFEN-- 93
Query: 601 SFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVD-----FVACLGGDG 655
+L D+H + A++ ++ + L + + A +
Sbjct: 94 CYLEGN---------DIHALAAKLLQ---------ENDTTLVKTKELIKNYITARIMAKR 135
Query: 656 VI--LHASNLFRGAVPPVISFNLGSLGFLTSHPF------EDYRQDLRQV--IYGNNTLD 705
S LFR G+ + F +DY ++LR + Y + L
Sbjct: 136 PFDKKSNSALFRAV-------GEGNAQLVAI--FGGQGNTDDYFEELRDLYQTY--HVLV 184
Query: 706 GVYITLRMRLCCEIFRNGKAMP---GKVFDVLN--EVVVDRGSNPYLS------------ 748
G I E+ R + ++L E + YL
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 749 ---------KIECYEHDRLITKVQG-----DGVIVAT-----PTGSTAYSTAAGGSMVHP 789
K+ + L + ++G G++ A + + + + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR--KAIT- 301
Query: 790 NVPCMLF---------TPICPHSLSFRPVILPDSARLELKIP---------DDARSNAWV 831
+LF P + S P IL DS +P + +V
Sbjct: 302 ----VLFFIGVRCYEAYP----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 832 SFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQ---TGDWFH--SLVRCLNWNER----- 881
+ K L G V I + VN + +G SL LN R
Sbjct: 354 N---KTNSHLPAGKQVEISL-------VNGAKNLVVSG---PPQSLYG-LNLTLRKAKAP 399
Query: 882 --LDQ 884
LDQ
Sbjct: 400 SGLDQ 404
Score = 42.0 bits (98), Expect = 0.001
Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 64/183 (34%)
Query: 25 LLEDKIVSVLGCMLSLLNKGREDVLSG--RS--SIMNAYRVADISMTEDQ---------- 70
L K V + SL+N + V+SG +S + R A DQ
Sbjct: 360 LPAGKQVEI-----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 71 ------LPPLAIFRSEMKRCCESMHIALENYLTP-EDVRSLDVWRKLQRLKNVCYDSGFP 123
LP + F S L P D+ + D+ + NV ++
Sbjct: 415 KFSNRFLPVASPFHSH--------------LLVPASDLINKDLVK-----NNVSFN---- 451
Query: 124 RGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVT--FCRGGQVTEEGLKW--LMEKGYKT 179
D I PVY + D+ ++ + +KW +
Sbjct: 452 -AKDIQI--------PVYDTFDGSDLRVLSGSISERIVD--CIIRLPVKWETTTQFKATH 500
Query: 180 IVD 182
I+D
Sbjct: 501 ILD 503
Score = 38.9 bits (90), Expect = 0.008
Identities = 58/367 (15%), Positives = 104/367 (28%), Gaps = 142/367 (38%)
Query: 17 EFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYR---VADISMTEDQLPP 73
EF E L + I ++ LL + ++ + I N +A +
Sbjct: 90 EF--ENCYLEGNDIHALA---AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 74 L------------AIF--------------------RSEMKRCCESMHIALENYL-TPED 100
L AIF + + L + T D
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 101 V-----RSLDV--WRKLQRLKNVCYDSGFPRGDDY--------PIHTL--FAN------- 136
+ L++ W L+N S P DY P+ + A+
Sbjct: 205 AEKVFTQGLNILEW-----LEN---PSNTP-DKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 137 --WSPVYLSN--------SKD-----DIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIV 181
++P L + S+ IA DS +F + + L G
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF---FVSVRKAITVLFFIGV---- 308
Query: 182 DIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-M--------EQVEKFASLVS 232
R + + ++ +IL +E P+ M EQV+ + +
Sbjct: 309 -----RCYEAYPNTSLPPSILEDSLE------NNEGVPSPMLSISNLTQEQVQDYVNKT- 356
Query: 233 NSS---KKPLYLHSKEGVWRTYAMV-SRWRQYMARCASQISGQTITSNDVLLKDSTRTRK 288
NS K + + ++V + + +SG + L + RK
Sbjct: 357 NSHLPAGKQVEI----------SLVNGA-KNLV------VSGPPQS----LYGLNLTLRK 395
Query: 289 LKASAGK 295
KA +G
Sbjct: 396 AKAPSGL 402
Score = 38.5 bits (89), Expect = 0.012
Identities = 39/258 (15%), Positives = 65/258 (25%), Gaps = 102/258 (39%)
Query: 685 HPFEDYRQDLRQVIYGNNTLDGVYIT------LR---MRLCCEIFRNGKAMPGKVFDVLN 735
H + Y + ++ N ++ +R + E +GK K+F +N
Sbjct: 1652 HFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 736 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVAT----P---TGSTA----------- 777
E + + + G++ AT P A
Sbjct: 1712 EH---------STSY-TFRSE--------KGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 778 --YSTAAGGSMVHPNVPCMLFTPICPHSL-------------SFRPVILPDSARLELKIP 822
+T AG HSL S + +
Sbjct: 1754 PADATFAG------------------HSLGEYAALASLADVMSIE-----SLVEV-VFYR 1789
Query: 823 DDARSNAWVSFDGKRRQQLS----RGDSVRIFMSEHPIPTVNK--SDQTGDWFHSLVRCL 876
A V D R V S+ + V + +TG W +V
Sbjct: 1790 GMTMQVA-VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG-WLVEIV--- 1844
Query: 877 NWNERLDQ-------KAL 887
N+N Q +AL
Sbjct: 1845 NYNVENQQYVAAGDLRAL 1862
Score = 36.6 bits (84), Expect = 0.045
Identities = 41/262 (15%), Positives = 72/262 (27%), Gaps = 98/262 (37%)
Query: 520 VGNMC----ASSTGVVRVQSRKKAEMFLVRTDGFS---CNREKVTESSLAFTHPSTQQ-- 570
G M +S + +A+ T GFS ++ F ++
Sbjct: 1629 QG-MGMDLYKTSK-AAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 571 ---QMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGF 627
++++T L +K + E + +F + ++
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGLLS----------------- 1727
Query: 628 GFVQTFYLQDTSDLHERVDFVACLGGDGVILHASN-LFR-----GAVPPVISFNLG-SLG 680
T + Q A + F G +P +F G SLG
Sbjct: 1728 ---ATQFTQ-----------PA-------LTLMEKAAFEDLKSKGLIPADATF-AGHSLG 1765
Query: 681 -F--LTSH----PFED------YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAM- 726
+ L S E YR QV + E+ R+ M
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD---------------ELGRSNYGMI 1810
Query: 727 ---PGKVFDVLNE----VVVDR 741
PG+V ++ VV+R
Sbjct: 1811 AINPGRVAASFSQEALQYVVER 1832
Score = 31.6 bits (71), Expect = 1.5
Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 104/272 (38%)
Query: 312 IQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEV-DTA----VGSLGTTFSKE 366
Q + G G MD S ++A++V + A + G FS
Sbjct: 1626 SQEQ----GMG----MDLYKTS-------------KAAQDVWNRADNHFKDTYG--FS-- 1660
Query: 367 TDPFKAQVPPSNFVSK--KEMSRFFRSKTTSPPRYFNYQS-----------------KRM 407
+ V ++ F + R NY + K +
Sbjct: 1661 ---------ILDIVINNPVNLTIHFGGEKGKRIRE-NYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 408 DVLPSEIVSSGPVSGVAETRYSQ-----WS------LSGNNLSPNHQNLPAG-S--EKSS 453
+ + ++ T+++Q L L P AG S E
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF-AGHSLGE--- 1766
Query: 454 DNNGYVSAGCSTNG-----------FDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQ 502
Y +A S F RG +M A V + DE S+ +
Sbjct: 1767 ----Y-AALASLADVMSIESLVEVVFYRG--MTMQVA-----VPR--DELG-RSNYGMIA 1811
Query: 503 RSNGKPSNSGDDD-LGPIVGNMCASSTGVVRV 533
+ G+ + S + L +V + + +V +
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 8e-11
Identities = 105/692 (15%), Positives = 205/692 (29%), Gaps = 203/692 (29%)
Query: 173 MEKGYKTIVDIRAERVKDNFYEAAIDD---AILSGKV--ELIKIPVEVRTAPTMEQVEKF 227
+ YK I+ + + DNF + D +ILS + +I V +
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------SGTLRL 67
Query: 228 ASLVSNSSKKPLYLHSKEGVWRTYA-MVSRWRQYMARCASQISGQTITSNDVLLKDSTRT 286
+ + ++ + +E + Y ++S + R S ++ I D L D+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 287 RKLKASAGKFLLEEKYETVKENQDEIQTKNGVF-----GFGLSV-------DMD-KRNQS 333
K S + Y +++ E++ V G G + +
Sbjct: 127 AKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 334 NGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKE--TDPFKAQVPPSNFVS-KKEMSRFFR 390
+ +++ S + V + L + + S + E+ R +
Sbjct: 182 FKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 391 SKTTSPPR---------------YFNYQSKRMDVLPSEIVSSGPVSGVAETRYSQWSLSG 435
SK FN K +L ++ TR+ Q +
Sbjct: 240 SK--PYENCLLVLLNVQNAKAWNAFNLSCK---IL----LT---------TRFKQVT--- 278
Query: 436 NNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVIS 495
+ LS + S D++ + + S+ L ++L +V++
Sbjct: 279 DFLSAATT-----THISLDHH--------SMTLTPDEVKSLL-LKYLDCRPQDLPREVLT 324
Query: 496 SSVRDVQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFS-CNRE 554
++ P ++ A S +R L D + N +
Sbjct: 325 TN--------------------PRRLSIIAES---IRD--------GLATWDNWKHVNCD 353
Query: 555 KVT---ESSLAFTHPSTQQQM-------------------LMW----KTTPRTVLV-LKK 587
K+T ESSL P+ ++M L+W K+ V+ L K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 588 PGPALMEEAKEVASFLYH---QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHER 644
+ ++ KE + + K+ + E +H + + +TF D +
Sbjct: 414 YS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYL- 469
Query: 645 VDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYR---QDLRQ 696
D H N+ L + FL D+R Q +R
Sbjct: 470 ---------DQYFYSHIGHHLKNIEHPE-----RMTLFRMVFL------DFRFLEQKIRH 509
Query: 697 VIYGNNTLDGVYITL-RMRLCCE-IFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIE--- 751
N + TL +++ I N V +L+ +L KIE
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----------FLPKIEENL 559
Query: 752 -CYEHDRLITKVQGDGVIVATPTGSTAYSTAA 782
C ++ L ++ I + A
Sbjct: 560 ICSKYTDL---LR----IALMAEDEAIFEEAH 584
Score = 39.1 bits (90), Expect = 0.007
Identities = 51/349 (14%), Positives = 87/349 (24%), Gaps = 130/349 (37%)
Query: 64 ISMTEDQLP-------PLAI------FRSEMKR-------CCESMHIALE---NYLTPED 100
+ LP P + R + C+ + +E N L P +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 101 VRSLDVWRKLQRLKNVCYD--SGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSEVTF 158
R +D S FP P L W D+ D
Sbjct: 371 YRK-------------MFDRLSVFPPSAHIPTILLSLIWF---------DVIKSDVM--- 405
Query: 159 CRGGQVTEEGLKW-LMEKGYK----TIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 213
V + K+ L+EK K +I I E E A+ +I+
Sbjct: 406 ----VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 214 EVRTAP---------------TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWR 258
+ P +E E+ + ++L R+
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMVFLD------------FRFL 503
Query: 259 QYMARCASQISGQTITSNDVLL-----------KDSTRTRKLKASAGKFLLEEKYETV-- 305
+ R S + + + L D R + A FL K E
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA-ILDFL--PKIEENLI 560
Query: 306 -KENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVD 353
+ D ++ L + ++ E+ K+V
Sbjct: 561 CSKYTDLLR-------IALM------AEDEAIFE--------EAHKQVQ 588
Score = 38.3 bits (88), Expect = 0.013
Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 91/338 (26%)
Query: 604 YHQEKMNILV-EPDVH--DIFARIPGF--GFVQTFYLQDTSDL------HERVDFVACLG 652
+H M+ E DI + F FV F +D D+ E +D +
Sbjct: 2 HHHHHMDFETGEHQYQYKDI---LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 653 GD--------GVIL-HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ---------DL 694
+L + + V V+ N FL S + RQ +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 695 RQVIYGNNTL---DGV-----YITLRMRLCCE------IFRNGKAMP--GK---VFDVL- 734
R +Y +N + V Y+ LR L E + +G + GK DV
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDG--VLGSGKTWVALDVCL 172
Query: 735 NEVVVDRGSNP--YLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVP 792
+ V + +L+ C + ++ +Q +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------------KLLYQIDPNWTSRSDHS 220
Query: 793 CMLFTPICPHSLSFRPVILPDSARLE--LKIPDDARS-NAWVSFDGK-------RRQQLS 842
+ I HS+ L S E L + + ++ AW +F+ R +Q++
Sbjct: 221 SNIKLRI--HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 843 R---GDSVRIFMSEHPIPTVNKSDQTGDWFHSLVRCLN 877
+ +H T+ D+ ++ L+
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP-DEVKSLL---LKYLD 312
Score = 35.6 bits (81), Expect = 0.087
Identities = 56/447 (12%), Positives = 115/447 (25%), Gaps = 120/447 (26%)
Query: 481 LLTSVTKNLDEQVISSSVRDVQRSN--GKPSNSGDDDLGP--IVGNMCASSTGVVRVQSR 536
+ N D + + + + S D G + + + +V
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV----- 79
Query: 537 KKAEMFL---VRTD-GF--SCNREKVTESSLAFTHPSTQQQMLMWKT----TPRTVLVLK 586
+ F+ +R + F S + + + S+ Q+ L + V
Sbjct: 80 ---QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNV---- 131
Query: 587 KPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG----FVQTFYLQDTSDLH 642
+ ++ L ++ + + G G + +
Sbjct: 132 -SRLQPYLKLRQA---LLELRPAKNVL---IDGV----LGSGKTWVALDV--CLS-YKVQ 177
Query: 643 ERVDF------VA-CLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLR 695
++DF + C + V+ L P S + +LR
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELR 235
Query: 696 QVI----YGNN--TLDGVYITLRMRLCCEIFRNGKAMPGKVFD----VL----NEVVVDR 741
+++ Y N L V N KA F+ +L + V D
Sbjct: 236 RLLKSKPYENCLLVLLNVQ-------------NAKAW--NAFNLSCKILLTTRFKQVTDF 280
Query: 742 GSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICP 801
S + I H +T + ++ +P ++ I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 802 HSLSFRPVILPDSARLELKI--------PDDARSNAWVSFDGKRRQQLSRGDSVRIFMSE 853
++ + +L I P + R K +LS +F
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR---------KMFDRLS------VFPPS 384
Query: 854 HPIPTVNKSDQTGDWFHSLVRCLNWNE 880
IPT+ + L W +
Sbjct: 385 AHIPTI-------------LLSLIWFD 398
>2f46_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria
meningitidis Z2491}
Length = 156
Score = 57.7 bits (139), Expect = 6e-10
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 3/113 (2%)
Query: 157 TFCRGGQVTEEGLKWLMEKGYKTIVDIRAER-VKDNFYEAAIDDAILSGKVELIKIPVEV 215
Q+T+ + + + G KTI+ R +R + A I + V
Sbjct: 23 HLYISPQLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVT 82
Query: 216 RTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 268
VE F L+ ++ P+ + + G R + R +I
Sbjct: 83 ARDIQKHDVETFRQLI-GQAEYPVLAYCRTG-TRCSLLWGFRRAAEGMPVDEI 133
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG
for eukaryotic structural genomics, phosphoprote
phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1
PDB: 2q47_A
Length = 151
Score = 54.4 bits (130), Expect = 9e-09
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 160 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 219
R G +L G ++I+ + E ++ + + I L + +E P
Sbjct: 17 RSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-----RLFQFGIEGNKEP 71
Query: 220 TM----EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 268
+ ++ ++ + P+ +H K G RT +V R+ C + I
Sbjct: 72 FVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSI 124
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 38.9 bits (91), Expect = 0.001
Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 165 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQV 224
++L++ G + +V + + + L ++ + P +Q+
Sbjct: 25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGL---------TLHRLRIPDFCPPAPDQI 75
Query: 225 EKFASLV--SNSSKKPLYLHSKEGVWRTYAMVSRW 257
++F +V +N+ + + +H G RT M++ +
Sbjct: 76 DRFVQIVDEANARGEAVGVHCALGFGRTGTMLACY 110
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine
phosphatase, P-loop, hydrolase; HET: PO4; 1.50A
{Autographa californicanucleopolyhedrovirus}
Length = 169
Score = 37.2 bits (86), Expect = 0.007
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 173 MEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLV- 231
I+D+ +Y+ L + KI V +T P V++F V
Sbjct: 52 QNPSIGAIIDLTNT---SKYYDG---VHFLRAGLLYKKIQVPGQTLPPESIVQEFIDTVK 105
Query: 232 ---SNSSKKPLYLHSKEGVWRTYAMVSRW 257
+ +H G+ RT MV R+
Sbjct: 106 EFTEKCPGMLVGVHCTHGINRTGYMVCRY 134
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 38.2 bits (88), Expect = 0.012
Identities = 28/202 (13%), Positives = 64/202 (31%), Gaps = 14/202 (6%)
Query: 203 SGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHSKEGVWRT------YAMVS 255
++ ++ P V+KF + K L+ H G+ RT + ++
Sbjct: 198 QHGANYFRLTLQDHFRPDDPDVDKFLEFYKSLPKDAWLHYHCYAGMGRTTIFMVMHDILK 257
Query: 256 RWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEK-YETVKENQDEIQT 314
+ Q + + D + KA ++ + Y+ VKEN D
Sbjct: 258 NAKDVSFDDIIQRQKLIGIVDLSEIPDKKKNYGRKAYIERYQFVQHFYDYVKENPDLKTP 317
Query: 315 KNGVFGFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPFKAQV 374
+ + +K N Y G + ++ ++ + F + + K
Sbjct: 318 ------YSVWAKKNKVNSWEPDYNGYIWRLDTKDRNQLPRNFRTMNSAFRTDVNVKKTGK 371
Query: 375 PPSNFVSKKEMSRFFRSKTTSP 396
+ ++K + + S +
Sbjct: 372 GFTPTPTRKGLDTLYMSGSAEF 393
Score = 29.4 bits (65), Expect = 6.7
Identities = 22/164 (13%), Positives = 56/164 (34%), Gaps = 17/164 (10%)
Query: 163 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAID--------DAILSGKVELIKIPVE 214
+V ++ L K+++ ++ K + + + +I
Sbjct: 448 EVLKDENSRLNAARGKSLIVAELDKDKMPIDPKPVKIESVMTEQQLVEKNGLHYYRIAAT 507
Query: 215 VRTAPTMEQVEKFASLVSNSSKKP-LYLHSKEGVWRT---YAMVSRWRQYMARCASQISG 270
P+ +++F + L+ H + G RT AM + +S
Sbjct: 508 DHIWPSAANIDEFINFTRTMPANAWLHFHCQAGAGRTTAYMAMYDMMKNPDVSLGDILSR 567
Query: 271 QTITSNDVLLKDSTRTRKLKASAGKF-----LLEEKYETVKENQ 309
Q + + + + + + + A + ++E+ Y+ V+EN
Sbjct: 568 QYLLGGNYVAYEIAKPKPDQWKADYYHQKAHMIEKFYQYVQENH 611
>1vee_A Proline-rich protein family; hypothetical protein, structural
genomics, rhodanese domain, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} PDB: 2dcq_A
Length = 134
Score = 34.6 bits (79), Expect = 0.043
Identities = 10/90 (11%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 100 DVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIASKDSE---- 155
D+R+ +R+ G P + ++ ++ K +
Sbjct: 26 DIRATADFRQ----------VGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENT 75
Query: 156 --VTFCRGGQVTEEGLKWLMEKGYKTIVDI 183
+ +E + + G+K+ I
Sbjct: 76 TLYILDKFDGNSELVAELVALNGFKSAYAI 105
>3mmj_A MYO-inositol hexaphosphate phosphohydrolase; phytase, protein
tyrosine phosphatase, inositol phosphate, I phosphatase;
HET: IHP; 1.60A {Selenomonas ruminantium} PDB: 1u24_A
1u25_A* 1u26_A* 3o3l_A* 3moz_A* 2pt0_A 2psz_A 3d1h_A
3d1o_A 3d1q_A 2b4u_A 2b4p_A 2b4o_A
Length = 314
Score = 33.6 bits (76), Expect = 0.28
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 10/116 (8%)
Query: 206 VELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSKEGVWRT------YAMVSRWR 258
+ +I PT E +++F + + L+ HS+ GV RT M+
Sbjct: 182 MRYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHSEAGVGRTTAFMVMTDMLKNPS 241
Query: 259 QYMARCAS---QISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDE 311
+ +I G + KD + ++E+ Y V+EN+ +
Sbjct: 242 VSLKDILYRQHEIGGFYYGEFPIKTKDKDSWKTKYYREKIVMIEQFYRYVQENRAD 297
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 32.0 bits (72), Expect = 0.41
Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 22/96 (22%)
Query: 100 DVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPV-----------YLSNSKDD 148
DVR WR G P ++ W+ D
Sbjct: 26 DVRCEAEWRF----------VGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPAD 75
Query: 149 IASKDSEVTF-CRGGQVTEEGLKWLMEKGYKTIVDI 183
+ V F CR G + + E G ++
Sbjct: 76 ADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNV 111
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 31.2 bits (70), Expect = 1.0
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 173 MEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP-VEVRTAPTMEQVEKFASLV 231
++ +VD+ FY+ + I ++ IK+ PT E E F L
Sbjct: 79 LKVKMGLLVDLTNT---SRFYD---RNDIEKEGIKYIKLQCKGHGECPTTENTETFIRLC 132
Query: 232 ----SNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 264
+ + + +H G RT ++ +
Sbjct: 133 ERFNERNPPELIGVHCTHGFNRTGFLICAFLVEKMDW 169
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 1.2
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 19/67 (28%)
Query: 254 VSRWR-QYMARCASQISGQTITSNDVLLKDSTRTRK---LKASAGKFLLEEKYETVKENQ 309
+ +WR + R D+ + A K L EE + E
Sbjct: 87 IRKWREEQRKRLQE--------------LDAASKVMEQEWREKAKKDL-EEWNQRQSEQV 131
Query: 310 DEIQTKN 316
++ + N
Sbjct: 132 EKNKINN 138
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 30.8 bits (69), Expect = 1.5
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 166 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE 225
++ + L G + I + + D + P+ P +
Sbjct: 61 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCC 120
Query: 226 KFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCAS 266
+ ++ + + +HS G+ R+ + + Y++ S
Sbjct: 121 EIMEELTTCLKNYRKTLIHSYGGLGRSCLVAACLLLYLSDTIS 163
>3v0d_A Voltage-sensor containing phosphatase; PTP, hydrolase; HET: PO4;
1.10A {Ciona intestinalis} PDB: 3v0f_A* 3v0g_A 3v0h_A*
3awf_A 3v0j_A 3awe_A 3awg_A 3v0e_A 3v0i_A
Length = 339
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 198 DDAILSGKVELIKIPVEVRTAPTMEQVEKFASLV----SNSSKKPLYLHSKEGVWRTYAM 253
D+ V + I PT+ + KF ++ + +HSK G RT +
Sbjct: 79 DETKFDNHVYRVMIDD--HNVPTLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTL 136
Query: 254 VSRWRQYMARCAS 266
VS W + +
Sbjct: 137 VSSWLLEDGKFDT 149
>3e0r_A C3-degrading proteinase (CPPA protein); MCSG, PSI, SAD, structural
GE protein structure initiative; 2.30A {Streptococcus
pneumoniae}
Length = 244
Score = 29.6 bits (66), Expect = 4.0
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 530 VVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTP----RTVLVL 585
++ +RK E F + T G E ES+ T + L+ + P R V
Sbjct: 15 TLKANNRKLNETFYIETLGMKALLE---ESAFLSLGDQTGLEKLVLEEAPSMRTRKVEGR 71
Query: 586 KKPGPALM--EEAKEVASFLYHQEKMNIL 612
KK ++ E E+ L + ++ L
Sbjct: 72 KKLARLIVKVENPLEIEGILSKTDSIHRL 100
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic
resolution, double layered particle, de novo,
infectious, icosah virus; HET: NAG; 3.80A {Simian
rotavirus A} PDB: 1kri_A
Length = 776
Score = 30.0 bits (67), Expect = 4.7
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 147 DDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSG 204
DDI++ + R Q++ L ++ + + + RA RV D +EA D +
Sbjct: 634 DDISAAVLKTKIDRSTQISPNTLPDIVTEASEKFIPNRAYRVINNDEVFEAGTDGRFFAY 693
Query: 205 KVE-LIKIPVEVRTAPTMEQVEKFASLVSNS 234
+VE +IP +V +KFA LV++S
Sbjct: 694 RVETFDEIPFDV---------QKFADLVTDS 715
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress
response, sigma factor, periplasm, membrane,
transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A
2v43_A 2v42_A
Length = 295
Score = 28.9 bits (64), Expect = 7.4
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 813 DSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSL 872
+S R D+ + DG RR+ + RG+ + F P D D SL
Sbjct: 33 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLE-PFTLNGDYIVDSLPSL 91
Query: 873 VR 874
+
Sbjct: 92 IY 93
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 28.3 bits (64), Expect = 9.7
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 145 SKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTI 180
+ D I E+ +++ + L L + G+K I
Sbjct: 151 AXDYIDESTGELICAANMELSLDLLAXLSQSGHKRI 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,302,124
Number of extensions: 810126
Number of successful extensions: 1835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 41
Length of query: 887
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 785
Effective length of database: 3,853,851
Effective search space: 3025273035
Effective search space used: 3025273035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)