RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002733
(887 letters)
>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 302
Score = 164 bits (415), Expect = 9e-46
Identities = 74/308 (24%), Positives = 124/308 (40%), Gaps = 16/308 (5%)
Query: 580 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-- 636
R+VL++ G E A+ V L + ++ + D + ++ ++
Sbjct: 1 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIE 60
Query: 637 ---DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 693
+ + V LGGDG L A+ L R A PV+ NLG +GFL E
Sbjct: 61 VVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAV 120
Query: 694 LRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 753
L V+ + Y + R G LNEV +++G + +
Sbjct: 121 LEHVVAQD------YRVEDRLTLDVVVRQGG-RIVNRGWALNEVSLEKGPRLGVLGVVVE 173
Query: 754 EHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPD 813
R ++ DGV+V+TPTGSTAY+ +AGG ++ P++ +L P H+L RP++
Sbjct: 174 IDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSP 233
Query: 814 SARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWFHSLV 873
A + ++I D +A V DG+R + G + + + + LV
Sbjct: 234 EATIAIEIEADGH-DALVFCDGRREMLIPAGSRLEVTRCVTSVKWARLDSA--PFTDRLV 290
Query: 874 RCLNWNER 881
R
Sbjct: 291 RKFRLPVT 298
>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 139 bits (351), Expect = 1e-37
Identities = 57/249 (22%), Positives = 96/249 (38%), Gaps = 26/249 (10%)
Query: 630 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 689
V+ S+ E DF+ +GGDG IL + PP+ N G +G LT E+
Sbjct: 25 VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKR-CPPIFGINTGRVGLLTHASPEN 83
Query: 690 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 749
+ +L++ + + E F LNE+ V +
Sbjct: 84 FEVELKKAV--------------EKFEVERFPRVSCSAMPDVLALNEIAVLSRKPAKMID 129
Query: 750 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 809
+ + +++ DG IVAT GST Y+ +AGG +V P + C + PI P ++P
Sbjct: 130 VALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPY 189
Query: 810 ILPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSVRIFMSEHPIPTVNKSDQTGDWF 869
++ ++E+ A V DG++ + + I SE P F
Sbjct: 190 VVSMERKIEVIAEK-----AIVVADGQKS--VDFDGEITIEKSEFPAVFFKNE----KRF 238
Query: 870 HSLVRCLNW 878
+L +
Sbjct: 239 RNLFGKVRS 247
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 151
Score = 55.2 bits (132), Expect = 2e-09
Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 160 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 219
R G +L G ++I+ + E ++ + + I L + +E P
Sbjct: 17 RSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-----RLFQFGIEGNKEP 71
Query: 220 TM----EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 268
+ ++ ++ + P+ +H K G RT +V R+ C + I
Sbjct: 72 FVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSI 124
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 31.1 bits (70), Expect = 0.26
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 757 RLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTP---ICPHSLSFR---PVI 810
+ + + +IV + +G+T S PN P +L T S +R P +
Sbjct: 22 AAVFEQKAKAIIVLSTSGTTPRLV----SKYRPNCPIILVTRCPRAARFSHLYRGVFPFV 77
Query: 811 LPDSARLELKIPDDARSNAWVSFDGKRRQQLSRGDSV 847
+ +AR N + K L +GD+
Sbjct: 78 FEKEPVSDWTDDVEARINFGIEK-AKEFGILKKGDTY 113
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor
domain {Bacillus subtilis [TaxId: 1423]}
Length = 169
Score = 30.3 bits (68), Expect = 0.63
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 569 QQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG 628
++Q+ M + + VL++ P + E + Y + E + DI
Sbjct: 26 KKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKN----LDHESSLMDIINDHSSVD 81
Query: 629 FVQTFYLQ 636
++ +
Sbjct: 82 RLKQTLKR 89
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 29.3 bits (65), Expect = 2.0
Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 24/178 (13%)
Query: 32 SVLGCMLSLLNKGREDVLSGRS-SIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHI 90
V +L +L+ GR GR+ N + ++ + +R + +
Sbjct: 140 DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFK 199
Query: 91 ALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIA 150
L+ + PE L RL + F I + LS + +A
Sbjct: 200 VLQQHFRPEF---------LNRLDEIVV---FRPLTKEQIR----QIVEIQLSYLRARLA 243
Query: 151 SKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRA-ERVKDNFYEAAIDDAILSGKVE 207
K + TE +L E+GY + R RV E + IL+G+V+
Sbjct: 244 EKRISLEL------TEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVK 295
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 132
Score = 26.7 bits (59), Expect = 6.6
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 201 ILSGKVELIKIPVEVRTAPTM--------EQVEKFASLVSNSSKKPLYLHSKEGVWR 249
I++ K +I I +E+++ + EQ E S K GV +
Sbjct: 35 IIALKNGVI-ILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLK 90
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.3 bits (59), Expect = 7.4
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 684 SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNG 723
++ +YR ++ + + LDG+ + + R + R G
Sbjct: 159 NNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARGG 198
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 272
Score = 27.1 bits (59), Expect = 8.5
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 7/108 (6%)
Query: 164 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV--EVRTAPTM 221
+ + G L G + D+R+ R + D I V L+ P + +
Sbjct: 33 LDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGI---DVHLLPFPDLADDDADDSA 89
Query: 222 EQVEKFASLVSNSSKKPLYLHSKEGVWRTYA--MVSRWRQYMARCASQ 267
F L++N S + + M +RQ+ R +Q
Sbjct: 90 PHETAFKRLLTNDGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQ 137
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 27.4 bits (60), Expect = 10.0
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 84 CCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLS 143
+H A E + PE L + K + + DD + T F W
Sbjct: 255 LDHLLHRAKELFENPEFDYDLQASLLVPFFKGDFTLQEYLKLDDGVLSTYFTQW-----M 309
Query: 144 NSKDDIASK 152
+ D I
Sbjct: 310 DVPDSILGD 318
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,222,809
Number of extensions: 151192
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 10
Length of query: 887
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 794
Effective length of database: 1,130,706
Effective search space: 897780564
Effective search space used: 897780564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)