Query 002735
Match_columns 887
No_of_seqs 172 out of 257
Neff 4.7
Searched_HMMs 13730
Date Tue Mar 26 21:59:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002735.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H2_99-103//hhsearch_scop/002735hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qpva1 d.129.3.8 (A:1-133) Un 24.9 10 0.00074 13.6 0.8 13 284-296 121-133 (133)
2 d2etda1 a.29.9.1 (A:35-183) Hy 6.8 47 0.0034 9.4 0.7 31 841-871 95-127 (149)
3 d1q60a_ d.288.1.1 (A:) General 5.5 63 0.0046 8.6 1.6 13 685-697 62-74 (99)
4 d2ch1a1 c.67.1.3 (A:2-389) 3-h 4.9 73 0.0053 8.2 1.6 10 279-288 40-49 (388)
5 d2fx0a2 a.121.1.1 (A:77-198) H 4.6 78 0.0057 8.0 1.6 16 757-772 64-79 (122)
6 d1azta1 a.66.1.1 (A:88-201) Tr 4.6 78 0.0057 8.0 2.5 10 719-728 56-65 (114)
7 d1v95a_ c.51.1.1 (A:) Nuclear 3.5 1.1E+02 0.008 7.1 1.5 18 685-702 23-40 (130)
8 d1t1ja_ c.23.14.2 (A:) Hypothe 3.5 78 0.0056 8.0 -0.8 75 761-854 23-99 (119)
9 d1zcba1 a.66.1.1 (A:76-201) Tr 3.1 1.2E+02 0.0091 6.7 2.6 23 265-304 11-33 (126)
10 d1zcaa1 a.66.1.1 (A:83-204) Tr 3.1 1.3E+02 0.0092 6.7 2.5 23 265-304 11-33 (122)
No 1
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=24.89 E-value=10 Score=13.57 Aligned_cols=13 Identities=54% Similarity=0.698 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 4019999999999
Q 002735 284 GKDLRTLKQILEA 296 (887)
Q Consensus 284 ~KDLRaLkqILea 296 (887)
.+||+.||++|||
T Consensus 121 ~~dL~rlK~l~Ea 133 (133)
T d2qpva1 121 TADLEMLKSLLEA 133 (133)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998639
No 2
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=6.84 E-value=47 Score=9.36 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 520149799999--9999999899999999760
Q 002735 841 NCSSEITWLVLD--VERLIFKDLISEIVRDETG 871 (887)
Q Consensus 841 dl~~EveeIglE--IErlIfkDLVdEvV~DL~~ 871 (887)
++..++.++-.+ ..|..|.+-|.+.=..+..
T Consensus 95 ~l~~~l~~~E~~Ia~aR~~YN~~V~~yN~~i~~ 127 (149)
T d2etda1 95 QLMDELAGTENRIAVARRDYNEAVKKYNTAIKK 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999989996
No 3
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.48 E-value=63 Score=8.58 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 0279999999829
Q 002735 685 NHRYISEILLASG 697 (887)
Q Consensus 685 D~~YI~EIL~ASG 697 (887)
+..-...||.++.
T Consensus 62 gi~~Le~IL~~~~ 74 (99)
T d1q60a_ 62 GIPRLEKILRNKA 74 (99)
T ss_dssp CHHHHHHHHHTTT
T ss_pred CHHHHHHHHHCCC
T ss_conf 7899999997157
No 4
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Probab=4.87 E-value=73 Score=8.18 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=4.9
Q ss_pred CCCCCCCCHH
Q ss_conf 0012640199
Q 002735 279 EFKKSGKDLR 288 (887)
Q Consensus 279 ef~~s~KDLR 288 (887)
.+.+=+++++
T Consensus 40 ~~~hr~~ef~ 49 (388)
T d2ch1a1 40 VLSNFHAELF 49 (388)
T ss_dssp CCCTTCHHHH
T ss_pred CCCCCCHHHH
T ss_conf 7887889999
No 5
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=4.62 E-value=78 Score=7.99 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 1456679999999965
Q 002735 757 RKLVFDAVNEILVHKL 772 (887)
Q Consensus 757 RKLLFDlVNEiL~eil 772 (887)
+-.=|+.||-++--|.
T Consensus 64 gvfhF~Svn~tv~~I~ 79 (122)
T d2fx0a2 64 GVFHFFSINHTIHWIT 79 (122)
T ss_dssp TSCCCSCHHHHHHHHH
T ss_pred CEEEEEEHHHHHHHHH
T ss_conf 8267531147999988
No 6
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.61 E-value=78 Score=7.99 Aligned_cols=10 Identities=10% Similarity=0.281 Sum_probs=3.9
Q ss_pred CCHHHHHHHC
Q ss_conf 9048999830
Q 002735 719 NPNLFFILEQ 728 (887)
Q Consensus 719 dPsLFe~LEq 728 (887)
.|.+.+.+..
T Consensus 56 ~~e~~~~i~~ 65 (114)
T d1azta1 56 PPEFYEHAKA 65 (114)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 7999999999
No 7
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.50 E-value=1.1e+02 Score=7.05 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHCCCCCCC
Q ss_conf 027999999982997533
Q 002735 685 NHRYISEILLASGFLRDF 702 (887)
Q Consensus 685 D~~YI~EIL~ASGLl~d~ 702 (887)
.-.||-.-|..-|+.-|+
T Consensus 23 YAe~Ie~rL~~~Gl~vd~ 40 (130)
T d1v95a_ 23 YAESVGRKVRDLGMVVDL 40 (130)
T ss_dssp HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHCCCEEEE
T ss_conf 789999999864977889
No 8
>d1t1ja_ c.23.14.2 (A:) Hypothetical protein PA1492 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.48 E-value=78 Score=8.00 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHCCCC-CCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 679999999965112687-77777742-3568994325999999999862206888888899526869999832049999
Q 002735 761 FDAVNEILVHKLVLQESS-KKWFSPSK-LARGRSSGEQLLRDLCSEVDCLQANNSNCNLDGDDDSMTSIIWKDLKHGSTD 838 (887)
Q Consensus 761 FDlVNEiL~eil~~~~s~-~PW~ss~~-~~~~~~sGq~LLeEVwseI~~l~~~~s~csleded~sLd~IV~kDL~~~~~~ 838 (887)
|-.-|++-+++...-... .+-..+.. ...-...++..+.++|..|+..--.. | +.||.-|+ .+
T Consensus 23 f~~c~~~AA~li~~G~a~fSqismSHPIn~~la~~d~~~~g~~Wa~vd~~fm~~--~---------eeLIvL~L----pG 87 (119)
T d1t1ja_ 23 FRACNEVAATIVRAGHVVFSQVSMSHPINLCLAELDRAAIGRLWAPVDAFYMDH--L---------EELIVLDL----PG 87 (119)
T ss_dssp HHHHHHHHHHHHHTTCEEEEHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHH--C---------SEEEECCC----TT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH--H---------HHCEEEEC----CC
T ss_conf 999999999999817731133222570889984238577753104525999998--3---------20037756----88
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 7752014979999999
Q 002735 839 WTNCSSEITWLVLDVE 854 (887)
Q Consensus 839 W~dl~~EveeIglEIE 854 (887)
|- +..+|-.|||
T Consensus 88 We----~S~Gik~EiE 99 (119)
T d1t1ja_ 88 WR----DSAGIRREME 99 (119)
T ss_dssp GG----GCHHHHHHHH
T ss_pred CC----CCCCHHHHHH
T ss_conf 43----3303899999
No 9
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.15 E-value=1.2e+02 Score=6.69 Aligned_cols=23 Identities=13% Similarity=0.510 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3058999999732100126401999999999997545655
Q 002735 265 LSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEIL 304 (887)
Q Consensus 265 ~svy~eIEkRl~~lef~~s~KDLRaLkqILeamq~k~~~l 304 (887)
+.||..| +.++|.||+||..- |+
T Consensus 11 ~~I~~Ni---------------i~~m~~ll~a~~~l--~i 33 (126)
T d1zcba1 11 PTIYSNV---------------IKGMRVLVDAREKL--HI 33 (126)
T ss_dssp HHHHHHH---------------HHHHHHHHHHHHHT--TC
T ss_pred HHHHHHH---------------HHHHHHHHHHHHHC--CC
T ss_conf 8999999---------------99999999999985--99
No 10
>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.12 E-value=1.3e+02 Score=6.67 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 3058999999732100126401999999999997545655
Q 002735 265 LSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEIL 304 (887)
Q Consensus 265 ~svy~eIEkRl~~lef~~s~KDLRaLkqILeamq~k~~~l 304 (887)
+.||+.| +.++|.||+||..- |+
T Consensus 11 ~~I~~Ni---------------i~~~~~Li~am~~l--~i 33 (122)
T d1zcaa1 11 DTIFDNI---------------LKGSRVLVDARDKL--GI 33 (122)
T ss_dssp HHHHHHH---------------HHHHHHHHHHHHHT--CC
T ss_pred HHHHHHH---------------HHHHHHHHHHHHHC--CC
T ss_conf 9999999---------------99999999999983--99
Done!