BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002736
(886 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 122/255 (47%), Gaps = 29/255 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 115
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H VW + FS D +AS SDD +VKLW+ N +L
Sbjct: 116 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLL 173
Query: 696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT 755
G S ++V V F D G+++A S D + ++ RN ++ L TL GH+ +
Sbjct: 174 QTLTGHS-------SSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSS 223
Query: 756 VSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGY 814
V V F D T+ SAS D T+KLW+ + L + TGH++ N V
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-------LQTLTGHSSSVNGVAFRPDGQT 276
Query: 815 VATGSETNEVFVYHK 829
+A+ S+ V ++++
Sbjct: 277 IASASDDKTVKLWNR 291
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 22/206 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 402
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H VW + FS D T+ AS SDD +VKLW+ N +L
Sbjct: 403 ASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWNRNGQLL 460
Query: 696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT 755
G S ++V V F D G+++A S D + ++ RN ++ L TL GH+ +
Sbjct: 461 QTLTGHS-------SSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSS 510
Query: 756 VSYVKFV-DATTLVSASTDNTLKLWD 780
V V F D T+ SAS D T+KLW+
Sbjct: 511 VRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 103/209 (49%), Gaps = 28/209 (13%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWN---SYIKSQ 632
F DG+ A+A +K +K++ + + + H SS W S
Sbjct: 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH------------SSSVWGVAFSPDDQT 440
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
IAS++ + V++W+ Q+L + H V + FS D +AS SDD +VKLW+ N
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNG 498
Query: 693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
+L G S ++V V F D G+++A S D + ++ RN ++ L TL GH
Sbjct: 499 QLLQTLTGHS-------SSVRGVAFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGH 548
Query: 753 NKTVSYVKFV-DATTLVSASTDNTLKLWD 780
+ +V V F D T+ SAS+D T+KLW+
Sbjct: 549 SSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 29/255 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+A +K +K++ + + + H V + S IAS
Sbjct: 188 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT---------IAS 238
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
++ + V++W+ Q+L + H V + F D +AS SDD +VKLW+ N +L
Sbjct: 239 ASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWNRNGQLL 296
Query: 696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT 755
G S ++V V F D G+++A S D + ++ RN + L TL GH+ +
Sbjct: 297 QTLTGHS-------SSVWGVAFSPD-GQTIASASDDKTVKLWN-RNGQ-HLQTLTGHSSS 346
Query: 756 VSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGY 814
V V F D T+ SAS D T+KLW+ + L + TGH++ V S
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-------LQTLTGHSSSVRGVAFSPDGQT 399
Query: 815 VATGSETNEVFVYHK 829
+A+ S+ V ++++
Sbjct: 400 IASASDDKTVKLWNR 414
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
+ H V + FS D +AS SDD +VKLW+ N +L G S ++V V
Sbjct: 12 LEAHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHS-------SSVWGV 63
Query: 716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDN 774
F D G+++A S D + ++ RN ++ L TL GH+ +V V F D T+ SAS D
Sbjct: 64 AFSPD-GQTIASASDDKTVKLWN-RNGQL-LQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 775 TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHK 829
T+KLW+ + L + TGH++ V S +A+ S+ V ++++
Sbjct: 121 TVKLWNRNGQL-------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE AA+ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLAASSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 142 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 224 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 278
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F +G LA SAD I + + K T+ GH +S V + D+
Sbjct: 26 TKA-VSSVKFS-PNGEWLAASSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 82
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
LVSAS D TLK+WD+S L + GH+N + + +GS V +
Sbjct: 83 LVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 827 YHKAF-----PMPALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
+ +PA H+DP+S + I S + G
Sbjct: 137 WDVKTGKCLKTLPA------HSDPVSAVHFNRDGSLIVSSSYDG 174
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 123/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G+ + T+ ++ V V F D G + S D +D + + + N
Sbjct: 142 ----GMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNMVYIWN 268
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 224 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI-VQKL 278
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNF 840
+S L + GH+N + + +GS V ++ M L
Sbjct: 97 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-CLKTLP 149
Query: 841 NHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 30/259 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 55 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 108 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 162
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH-N 753
G + T+ ++ V V F D G + S D +D + + L TLI N
Sbjct: 163 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDN 216
Query: 754 KTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSV 810
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSV 270
Query: 811 WDG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 271 TGGKWIVSGSEDNLVYIWN 289
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 204
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 205 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 255
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 256 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 305
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 244
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 245 YSKGKCLK----TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 299
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 300 QGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F + G LA SAD I + + K T+ GH +S V + D+
Sbjct: 47 TKA-VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 103
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
LVSAS D TLK+WD+S L + GH+N + + +GS V +
Sbjct: 104 LVSASDDKTLKIWDVSSGKC------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 827 YH-------KAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
+ K P H+DP+S + I S + G
Sbjct: 158 WDVKTGKCLKTLPA--------HSDPVSAVHFNRDGSLIVSSSYDG 195
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 30/259 (11%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 53 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 106 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 160
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH-N 753
G + T+ ++ V V F D G + S D +D + + L TLI N
Sbjct: 161 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDN 214
Query: 754 KTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSV 810
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC------LKTYTGHKNEKYCIFANFSV 268
Query: 811 WDG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 269 TGGKWIVSGSEDNLVYIWN 287
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 202
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 203 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 253
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 254 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 303
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 242
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 243 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 297
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 298 QGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F + G LA SAD I + + K T+ GH +S V + D+
Sbjct: 45 TKA-VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 101
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
LVSAS D TLK+WD+S L + GH+N + + +GS V +
Sbjct: 102 LVSASDDKTLKIWDVSSGKC------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 827 YH-------KAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
+ K P H+DP+S + I S + G
Sbjct: 156 WDVKTGKCLKTLPA--------HSDPVSAVHFNRDGSLIVSSSYDG 193
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 144
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 145 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 253
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 187 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 237
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 238 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 287
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 227 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 281
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-------KAFPM 833
+S L + GH+N + + +GS V ++ K P
Sbjct: 100 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 154 --------HSDPVSAVHFNRDGSLIVSSSYDG 177
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 48 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 101 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 155
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 156 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 264
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 265 GGKWIVSGSEDNLVYIWN 282
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 197
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 198 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 248
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 249 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 298
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 237
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 238 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 292
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 293 QGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F +G LA SAD I + + K T+ GH +S V + D+
Sbjct: 40 TKA-VSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 96
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
LVSAS D TLK+WD+S L + GH+N + + +GS V +
Sbjct: 97 LVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 827 YH-------KAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
+ K P H+DP+S + I S + G
Sbjct: 151 WDVKTGKCLKTLPA--------HSDPVSAVHFNRDGSLIVSSSYDG 188
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 142 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 184 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 234
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 224 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 278
Query: 750 IGHNKTV 756
GH V
Sbjct: 279 QGHTDVV 285
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F +G LA SAD I + + K T+ GH +S V + D+
Sbjct: 26 TKA-VSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 82
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
LVSAS D TLK+WD+S L + GH+N + + +GS V +
Sbjct: 83 LVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 827 YHKAF-----PMPALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
+ +PA H+DP+S + I S + G
Sbjct: 137 WDVKTGKCLKTLPA------HSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 144
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 145 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 253
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 187 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 237
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 238 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 287
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 227 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 281
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 41 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 99
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-------KAFPM 833
+S L + GH+N + + +GS V ++ K P
Sbjct: 100 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 153
Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 154 --------HSDPVSAVHFNRDGSLIVSSSYDG 177
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 142 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNLVYIWN 268
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 183
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 184 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 234
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 235 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 284
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 223
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 224 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 278
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KL+
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F +G LA SAD I + + K T+ GH +S V + D+
Sbjct: 26 TKA-VSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 82
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFV 826
LVSAS D TLK+WD+S L + GH+N + + +GS V +
Sbjct: 83 LVSASDDKTLKIWDVSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 827 YHKAF-----PMPALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
+ +PA H+DP+S + I S + G
Sbjct: 137 WDVKTGKCLKTLPA------HSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 30 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 83 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 137
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 138 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 192
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 246
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 247 GGKWIVSGSEDNLVYIWN 264
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 179
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 180 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 230
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 231 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 280
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 219
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 220 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 274
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 275 QGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 34 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 92
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-------KAFPM 833
+S L + GH+N + + +GS V ++ K P
Sbjct: 93 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 146
Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 147 --------HSDPVSAVHFNRDGSLIVSSSYDG 170
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 36 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 89 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 143
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 144 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 198
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 252
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 253 GGKWIVSGSEDNLVYIWN 270
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 185
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 186 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 236
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 237 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 286
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 225
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 226 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 280
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 281 QGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F + G LA SAD I + + K T+ GH +S V + D+
Sbjct: 28 TKA-VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 84
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
LVSAS D TLK+WD+S L + GH+N
Sbjct: 85 LVSASDDKTLKIWDVSS------GKCLKTLKGHSN 113
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 84 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 138
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 139 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 247
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 248 GGKWIVSGSEDNLVYIWN 265
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 180
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 181 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 231
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 232 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 281
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 220
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 221 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 275
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-------KAFPM 833
+S L + GH+N + + +GS V ++ K P
Sbjct: 94 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 148 --------HSDPVSAVHFNRDGSLIVSSSYDG 171
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 27 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 80 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 134
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 135 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 189
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 243
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 244 GGKWIVSGSEDNLVYIWN 261
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 176
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F +G+ + + D+ + +D K L T
Sbjct: 177 -------GQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKGKC-LKTYT 227
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 228 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 277
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 216
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 217 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 271
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 272 QGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 31 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 89
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-------KAFPM 833
+S L + GH+N + + +GS V ++ K P
Sbjct: 90 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 143
Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 144 --------HSDPVSAVHFNRDGSLIVSSSYDG 167
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 31 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 84 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 138
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 139 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 193
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 247
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 248 GGKWIVSGSEDNLVYIWN 265
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 180
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 181 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 231
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 232 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 281
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 220
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 221 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 275
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 23/152 (15%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 35 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYH-------KAFPM 833
+S L + GH+N + + +GS V ++ K P
Sbjct: 94 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA 147
Query: 834 PALSFNFNHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 148 --------HSDPVSAVHFNRDGSLIVSSSYDG 171
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 37 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 90 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 144
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 145 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 199
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 253
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 254 GGKWIVSGSEDNLVYIWN 271
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 186
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 187 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 237
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 238 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 287
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 226
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 227 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 281
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 708 TKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATT 766
TKA V V+F + G LA SAD I + + K T+ GH +S V + D+
Sbjct: 29 TKA-VSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNL 85
Query: 767 LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
LVSAS D TLK+WD+S L + GH+N
Sbjct: 86 LVSASDDKTLKIWDVSS------GKCLKTLKGHSN 114
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 32 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 85 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 139
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G + T+ ++ V V F D G + S D +D + + + N
Sbjct: 140 ----GKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 194
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DNTLKLWD S L ++TGH N K F SV
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 248
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 249 GGKWIVSGSEDNLVYIWN 266
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 24/177 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S +F+ V++WDV + L + H V ++ F+ D +L+ S S DG ++W
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTAS 181
Query: 693 AILLLHLGVSIGTIKTKAN--VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ N V V+F + G+ + + D+ + +D K L T
Sbjct: 182 -------GQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKGKC-LKTYT 232
Query: 751 GHNKTVSYVKFVDATT-----LVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNV 802
GH K Y F + + +VS S DN + +W+L T ++ GHT+V
Sbjct: 233 GH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--TKEIV----QKLQGHTDV 282
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D ++KLW
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWD 221
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 222 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKL 276
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 277 QGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F +GE A++ +K IK++ D + + +S + W+S +++
Sbjct: 34 FSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
S+ + +++WDVS + L ++ H V+ +F+ L+ SGS D SV++W +
Sbjct: 87 SD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKT--- 141
Query: 696 LLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
G+ + T+ ++ V V F D G + S D +D + + + N
Sbjct: 142 ----GMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKN--FVGLSVW 811
VS+VKF + +++A+ DN LKLWD S L ++TGH N K F SV
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSK------GKCLKTYTGHKNEKYCIFANFSVT 250
Query: 812 DG-YVATGSETNEVFVYH 828
G ++ +GSE N V++++
Sbjct: 251 GGKWIVSGSEDNMVYIWN 268
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVL-TEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
S I SS+++G+ ++WD + Q L T + + V + FS +LA+ + D +KLW
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWD 223
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
++ L + K + F + G+ + GS D+ +Y ++L+ +I + L
Sbjct: 224 YSKGKCL----KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEI-VQKL 278
Query: 750 IGHNKTVSYVKFVDATTLVSAST---DNTLKLW 779
GH V +++++ D T+KLW
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 722 GRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWD 780
G LA SAD I + + K T+ GH +S V + D+ LVSAS D TLK+WD
Sbjct: 38 GEWLASSSADKLIKIWGAYDGKFEK-TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 96
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNF 840
+S L + GH+N + + +GS V ++ M L
Sbjct: 97 VSS------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-CLKTLP 149
Query: 841 NHADPLSGPETDDAAQFISSVCWRG 865
H+DP+S + I S + G
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDG 174
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 748 TLIGHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
TL GH K VS VKF + L S+S D +K+W
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 53
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 97/264 (36%), Gaps = 92/264 (34%)
Query: 67 SLRQWL------DKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSF 118
+L+ W+ ++ +RSV CLHIF QI E V HS+G++ +++PS F M
Sbjct: 101 NLKDWMNGRCTIEERERSV----CLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDV 156
Query: 119 NHVSFIEXXXXXXXXXXXHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPT 178
V D LVTA
Sbjct: 157 VKVG-----------------------------------------------DFGLVTAMD 169
Query: 179 NDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWY 238
D E + + AY H V T Y
Sbjct: 170 QDEEEQTVLTPMPAYARHTGQVG---------------------------------TKLY 196
Query: 239 ASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKE 298
SPE++ G S DI+ LG++LFEL PFST E+ RT++ +R+ PP K+P E
Sbjct: 197 MSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCE 256
Query: 299 ASFCLWLLHPEPSGRPKMGELLQS 322
+L P P RP+ ++++
Sbjct: 257 YVMVQDMLSPSPMERPEAINIIEN 280
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 36/286 (12%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC-----------DAIINENRDIHYPVVEMASRSKLSSIC 624
F DGE + A G NK +V+ D+ N++ + +S + S+C
Sbjct: 72 FSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 625 WNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSID-FSSADPTLLASGSDDG 683
++ K +A+ + ++++WD+ +++ ++ HE+ ++S+D F S D L SGS D
Sbjct: 131 FSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDR 187
Query: 684 SVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
+V++W + L L + G V V G+ +A GS D + +D
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDG-------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 744 I------PLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS- 795
+ + GH +V V F D ++VS S D ++KLW+L ++ +S
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 796 -----FTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPAL 836
+ GH + V + D Y+ +GS+ V + K P L
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 86/261 (32%)
Query: 67 SLRQWLDKPKRSVDVYE---CLHIFRQIVEIVYAAHSQGIVVHNVRPS--CFVMSSFNHV 121
+L+ W+++ + S++ E CLHIF QI E V HS+G++ +++PS F M V
Sbjct: 147 NLKDWMNR-RCSLEDREHGVCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKV 205
Query: 122 SFIEXXXXXXXXXXXHEEGLNTQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDL 181
D LVTA D
Sbjct: 206 G-----------------------------------------------DFGLVTAMDQDE 218
Query: 182 SEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASP 241
E + + AY TH V T Y SP
Sbjct: 219 EEQTVLTPMPAYATHXGQVG---------------------------------TKLYMSP 245
Query: 242 EELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPKEASF 301
E++ G S DI+ LG++LFEL FST E+ R ++ +R+ P K+P+E
Sbjct: 246 EQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMM 305
Query: 302 CLWLLHPEPSGRPKMGELLQS 322
+L P P+ RP+ +++++
Sbjct: 306 VQDMLSPSPTERPEATDIIEN 326
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+IAS + +QV+ + L +++ HE V FSS D + +A+ S D VK+W
Sbjct: 636 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSA 694
Query: 692 QAILLLHLGVSIGTIKTKANVCCVQFPLDSGR-SLAFGSADHRIYYYDLRNSKIPLCTLI 750
L+ + V C F S LA GS D + +DL N K T+
Sbjct: 695 TGKLVHTYD------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMF 747
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSR 787
GH +V++ +F D L S S D TL+LWD+ R
Sbjct: 748 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 54/330 (16%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
F DG F A ++ I+V+E D + EN + V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 612 ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
++ +++S C + +++ +A + +G +++ ++ ++V + H++ V
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 666 IDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSL 725
I F +AD L S S+D +++W+ + L T+K F L L
Sbjct: 1016 IQF-TADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK--------DFRLLQDSRL 1065
Query: 726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
S D + +++ +I +S DAT S S D T K+W +
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL- 1124
Query: 786 SRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADP 845
+PLH GH S+ +ATG + E+ +++ + + P
Sbjct: 1125 -----SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-----LHSCAP 1174
Query: 846 LSGPE-TDDAAQFISSVCWRGQSSNTLVAA 874
+S E T +++ VC+ S TLV+A
Sbjct: 1175 ISVEEGTATHGGWVTDVCF-SPDSKTLVSA 1203
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW+V ++ + H+ V S SS D T +S S D + K+WS
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1121
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-----P 745
+ L L G ++ C F LD G LA G + I +++ + ++ P
Sbjct: 1122 DLLSPLHELKGHNGCVR------CSAFSLD-GILLATGDDNGEIRIWNVSDGQLLHSCAP 1174
Query: 746 LCTLIG---HNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
+ G H V+ V F D+ TLVSA LK W+++ D+ +T TN
Sbjct: 1175 ISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG-----DSSQTFYTNGTN 1227
Query: 802 VKNF 805
+K
Sbjct: 1228 LKKI 1231
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 19/215 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFE-CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
F D A +KK+K+++ + D H V + S+ ++
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-----HLLLATG 726
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA- 693
S++F +++WD+++ + M H V FS D LLAS S DG+++LW + A
Sbjct: 727 SNDF--FLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSAN 783
Query: 694 ------ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
+ L + V C + D + + +A +++ +D+ S +
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV--AAKNKVLLFDIHTSGLLAE 841
Query: 748 TLIGHNKTVSYVKFVDATTL-VSASTDNTLKLWDL 781
GH+ T+ Y F L V A + ++LW++
Sbjct: 842 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 876
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 10/158 (6%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+IAS + +QV+ + L +++ HE V FSS D + +A+ S D VK+W
Sbjct: 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSA 687
Query: 692 QAILLLHLGVSIGTIKTKANVCCVQFPLDSGR-SLAFGSADHRIYYYDLRNSKIPLCTLI 750
L+ + V C F S LA GS D + +DL N K T+
Sbjct: 688 TGKLVHTYD------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMF 740
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSR 787
GH +V++ +F D L S S D TL+LWD+ R
Sbjct: 741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 128/330 (38%), Gaps = 54/330 (16%)
Query: 576 FDRDGELFAAAGVNKKIKVFEC---------------DAIINENRDIHYPV--------- 611
F DG F A ++ I+V+E D + EN + V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 612 ------VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWS 665
++ +++S C + +++ +A + +G +++ ++ ++V + H++ V
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLE-YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 666 IDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSL 725
I F +AD L S S+D +++W+ + L T+K F L L
Sbjct: 1009 IQF-TADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVK--------DFRLLQDSRL 1058
Query: 726 AFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
S D + +++ +I +S DAT S S D T K+W +
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL- 1117
Query: 786 SRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADP 845
+PLH GH S+ +ATG + E+ +++ + + P
Sbjct: 1118 -----SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL-----LHSCAP 1167
Query: 846 LSGPE-TDDAAQFISSVCWRGQSSNTLVAA 874
+S E T +++ VC+ S TLV+A
Sbjct: 1168 ISVEEGTATHGGWVTDVCF-SPDSKTLVSA 1196
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW+V ++ + H+ V S SS D T +S S D + K+WS
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSF 1114
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI-----P 745
+ L L G ++ C F LD G LA G + I +++ + ++ P
Sbjct: 1115 DLLSPLHELKGHNGCVR------CSAFSLD-GILLATGDDNGEIRIWNVSDGQLLHSCAP 1167
Query: 746 LCTLIG---HNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
+ G H V+ V F D+ TLVSA LK W+++ D+ +T TN
Sbjct: 1168 ISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG-----DSSQTFYTNGTN 1220
Query: 802 VKNF 805
+K
Sbjct: 1221 LKKI 1224
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 19/215 (8%)
Query: 576 FDRDGELFAAAGVNKKIKVFE-CDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIA 634
F D A +KK+K+++ + D H V + S+ ++
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN-----HLLLATG 719
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA- 693
S++F +++WD+++ + M H V FS D LLAS S DG+++LW + A
Sbjct: 720 SNDF--FLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSAN 776
Query: 694 ------ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
+ L + V C + D + + +A +++ +D+ S +
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV--AAKNKVLLFDIHTSGLLAE 834
Query: 748 TLIGHNKTVSYVKFVDATTL-VSASTDNTLKLWDL 781
GH+ T+ Y F L V A + ++LW++
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 23/219 (10%)
Query: 612 VEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSA 671
++ + +++S C + +++ IA + G +++ ++ +++ +H++ VW I F++
Sbjct: 962 IDYLTEAQVSCCCLSPHLQ-YIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 672 DPTLLASGSDDGSVKLWS--INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
+ TL++S SDD +++W+ +++ I L G +T + F L L S
Sbjct: 1021 EKTLISS-SDDAEIQVWNWQLDKCIFLR------GHQETVKD-----FRLLKNSRLLSWS 1068
Query: 730 ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRV 788
D + +++ + H TV DAT S S D T K+W +
Sbjct: 1069 FDGTVKVWNIITGNKEK-DFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL---- 1123
Query: 789 IDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVY 827
PLH GH SV +ATG + E+ ++
Sbjct: 1124 --LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 60/214 (28%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F DG+ A+ G +K ++VF+ + ++E+ + C S IA+
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAET--------GEKLLEIKAHEDEVLCCAFSTDDRFIAT 680
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSINQAI 694
+ + V++W+ +++ EH +V F+ S+ LLA+GS D +KLW +NQ
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK- 739
Query: 695 LLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNK 754
+ RN T+ GH
Sbjct: 740 -------------------------------------------ECRN------TMFGHTN 750
Query: 755 TVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSR 787
+V++ +F D L S S D TLKLWD + R
Sbjct: 751 SVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 17/213 (7%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
F D A V+KK+K++ +++ E + E + + NS +A+
Sbjct: 671 FSTDDRFIATCSVDKKVKIW--NSMTGELVHTYDEHSEQVNCCHFT----NSSHHLLLAT 724
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA-- 693
+ + +++WD+++ + M H V FS D LLAS S DG++KLW A
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFS-PDDKLLASCSADGTLKLWDATSANE 783
Query: 694 -----ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT 748
+ L + + V C + D R + +A ++I+ +D+ S +
Sbjct: 784 RKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMV--AAKNKIFLFDIHTSGLLGEI 841
Query: 749 LIGHNKTVSYVKFVDATTL-VSASTDNTLKLWD 780
GH+ T+ Y F L V A + ++LW+
Sbjct: 842 HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
S++ S +F+G V+VW++ + H+ V S D S D T +S S D + K+WS
Sbjct: 1062 SRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISH-DATKFSSTSADKTAKIWSF 1120
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK-IPLCTL 749
+ + L L G ++ C F +DS LA G + I +++ N + + LC
Sbjct: 1121 DLLLPLHELRGHNGCVR------CSAFSVDSTL-LATGDDNGEIRIWNVSNGELLHLCAP 1173
Query: 750 IGHNKTVSYVKFV-------DATTLVSASTDNTLKLWDL 781
+ ++ +V D L+SA +K W++
Sbjct: 1174 LSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNV 1210
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 624 CWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDG 683
C S+ ++ +S++ + ++W L E+R H V FS D TLLA+G D+G
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS-VDSTLLATGDDNG 1155
Query: 684 SVKLWSINQAILL 696
+++W+++ LL
Sbjct: 1156 EIRIWNVSNGELL 1168
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT 748
S+ Q+ ++ T + + +PL + S D I +D + +K + T
Sbjct: 169 SLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT 223
Query: 749 LIGHNKTVSYVKFVDA-TTLVSASTDNTLKLWDLS 782
L GH VS+ F ++S S D TLK+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 7/155 (4%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCT 748
S+ Q+ ++ T + + +PL + S D I +D + +K + T
Sbjct: 169 SLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT 223
Query: 749 LIGHNKTVSYVKFVDA-TTLVSASTDNTLKLWDLS 782
L GH VS+ F ++S S D TLK+W+ S
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 23/160 (14%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y ++ S ++ +V+VWD L ++ H RV+S+ F D + SGS D S+++
Sbjct: 247 YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRV 303
Query: 688 WSINQA----ILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSK 743
W + L H ++ G ++ K N+ L G+AD + +D++ +
Sbjct: 304 WDVETGNCIHTLTGHQSLTSG-MELKDNI------------LVSGNADSTVKIWDIKTGQ 350
Query: 744 IPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDL 781
L TL G NK S V + + ++++S D T+KLWDL
Sbjct: 351 C-LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 104/261 (39%), Gaps = 44/261 (16%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
+ ++I S + + ++VW + L + H VWS S ++ SGS D ++K+
Sbjct: 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKV 183
Query: 688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
W+ + L T++ C+ + + GS D + +D+ + L
Sbjct: 184 WNAETGECIHTLYGHTSTVR------CMHL---HEKRVVSGSRDATLRVWDIETGQC-LH 233
Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN---VKN 804
L+GH V V++ D +VS + D +K+WD +T LH+ GHTN
Sbjct: 234 VLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPET------ETCLHTLQGHTNRVYSLQ 286
Query: 805 FVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWR 864
F G+ V G + T +V + + H SG E D
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTG------HQSLTSGMELKD----------- 329
Query: 865 GQSSNTLVAANSSGNIKILEM 885
N LV+ N+ +KI ++
Sbjct: 330 ----NILVSGNADSTVKIWDI 346
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMR---EHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
+ S N + V++WD+ Q L ++ +H+ V + F + + + SDDG+VKLW
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWD 388
Query: 690 INQAILLLHL 699
+ + +L
Sbjct: 389 LKTGEFIRNL 398
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
S+ Q+ L T + V V +PL + S D I +D + +K +
Sbjct: 169 SLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVA 222
Query: 748 TLIGHNKTVSYVKFVDAT-TLVSASTDNTLKLWDLS 782
TL GH VS+ F ++S S D TLK+W+ S
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 10/155 (6%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+ ++ + G V++W+ + ++ E V + F A + GSDD +++++ N
Sbjct: 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI-ARKNWIIVGSDDFRIRVFNYNT 86
Query: 693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
++ I++ A + L GS D + ++ N+ T GH
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLS-------GSDDLTVKLWNWENNWALEQTFEGH 139
Query: 753 NKTVSYVKF--VDATTLVSASTDNTLKLWDLSMCT 785
V V F D +T S D T+K+W L T
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
+ WNS + + S++ + V +WD++ ++ + H V + + +L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 676 LASGSDDGSVKLWSI--NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
S +DD + +W N HL V T A V C+ F S LA GSAD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHL-VDAHT----AEVNCLSFNPYSEFILATGSADKT 299
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
+ +DLRN K+ L T H + V + + T L S+ TD L +WDLS
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
+ WNS + + S++ + V +WD++ ++ + H V + + +L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 676 LASGSDDGSVKLWSI--NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
S +DD + +W N HL V T A V C+ F S LA GSAD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHL-VDAHT----AEVNCLSFNPYSEFILATGSADKT 299
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
+ +DLRN K+ L T H + V + + T L S+ TD L +WDLS
Sbjct: 300 VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 333 TILASSGTDRRLNVWDLSK 351
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 9/156 (5%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMRE-HERRVWSIDFSSADPTLLASGSDDGSVKLW 688
K + S + + V++W+ + L + E HE V + F+ DP+ ASG D +VK+W
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 689 SINQAILLLHLGVSIGTIKTKANVCCVQ-FPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
S+ Q+ L T + V V +PL + S D I +D + +K +
Sbjct: 169 SLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVA 222
Query: 748 TLIGHNKTVSYVKFVDAT-TLVSASTDNTLKLWDLS 782
TL GH VS+ F ++S S D TLK+W+ S
Sbjct: 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VWD++ +++T+++ H V S+ S D +L AS DG +LW + +
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS-PDGSLCASSDKDGVARLWDLTK 227
Query: 693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
L + A Q R + + I +DL N I + H
Sbjct: 228 GEALSEMA---------AGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEH 278
Query: 753 NKT-------VSYVKFVDATTLVSASTDNTLKLWDLS 782
+ VS D +TL S TDN +++W +S
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
S++++ +++W++ Q + H + V S+ F S D + SG D ++++W++
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF-SPDNRQIVSGGRDNALRVWNVK--- 139
Query: 695 LLLHLGVSIGTIKTKAN---VCCVQF-PLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
G + T+ A+ V CV+F P + G D+ + +DL ++ + L
Sbjct: 140 -----GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL-VTDLK 193
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
GH V+ V D + S+ D +LWDL+
Sbjct: 194 GHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 678 SGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYY 737
S S D S++LW++ +G K +V V F D+ R + G D+ + +
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKF---LGHTK---DVLSVAFSPDN-RQIVSGGRDNALRVW 136
Query: 738 DLRNSKIPLCTLIGHNKTVSYVKF---VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLH 794
+++ + + H VS V+F +DA +VS DN +K+WDL+ T R++
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA--TGRLVT---- 190
Query: 795 SFTGHTNVKNFVGLSVWDGYVATGSETNEV 824
GHTN V +S DG + S+ + V
Sbjct: 191 DLKGHTNYVTSVTVSP-DGSLCASSDKDGV 219
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS----RSQVL---TEMREHERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD+S +V+ T H V + + +L
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 676 LASGSDDGSVKLWSI--NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
S +DD + +W N H V T A V C+ F S LA GSAD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSH-SVDAHT----AEVNCLSFNPYSEFILATGSADKT 297
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
+ +DLRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 298 VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 615 ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADP 673
A ++++ + +N Y + +A+ + + V +WD+ ++ L H+ ++ + +S +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 330
Query: 674 TLLASGSDDGSVKLWSINQ 692
T+LAS D + +W +++
Sbjct: 331 TILASSGTDRRLNVWDLSK 349
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 21/157 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S++ + ++VW+ S + + + H+R + + + L+ SGS D +++LW I
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC 325
Query: 693 AILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIP------L 746
L L ++ C++F + + G+ D +I +DL + P L
Sbjct: 326 GACLRVLEGHEELVR------CIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376
Query: 747 C--TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDL 781
C TL+ H+ V ++F D +VS+S D+T+ +WD
Sbjct: 377 CLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDF 412
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 43/212 (20%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y +I S + +++WD + + + H V + + D ++ +GS D +V++
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRV 197
Query: 688 WSINQAILL----------LHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYY 737
W +N +L LHL + G + T S D I +
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT-------------------CSKDRSIAVW 238
Query: 738 DLRN-SKIPLC-TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHS 795
D+ + + I L L+GH V+ V F D +VSAS D T+K+W+ S C + +
Sbjct: 239 DMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEF------VRT 291
Query: 796 FTGHTNVKNFVGLSVWDGYVATGSETNEVFVY 827
GH + L D V +GS N + ++
Sbjct: 292 LNGHK--RGIACLQYRDRLVVSGSSDNTIRLW 321
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 628 YIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKL 687
Y + I + + + V+VWDV+ ++L + H V + F++ ++ + S D S+ +
Sbjct: 181 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAV 237
Query: 688 WSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
W + + V +G +A V V F + + S D I ++ + +
Sbjct: 238 WDMASPTDITLRRVLVGH---RAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF-VR 290
Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDL 781
TL GH + ++ +++ D +VS S+DNT++LWD+
Sbjct: 291 TLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDI 323
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 18/166 (10%)
Query: 670 SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
S+D SGS DG ++LW + + +G K +V V F LD+ R + S
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRF---VGHTK---DVLSVAFSLDN-RQIVSAS 491
Query: 730 ADHRIYYYD-LRNSKIPLCTLI-GHNKTVSYVKFVDAT---TLVSASTDNTLKLWDLSMC 784
D I ++ L K + GH VS V+F T T+VSAS D T+K+W+LS C
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 785 TSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKA 830
R + GHT + V +S A+G + V ++ A
Sbjct: 552 KLR------STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 40/230 (17%)
Query: 576 FDRDGELFAAAGVNKKIKVF----ECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKS 631
F D +A ++ IK++ EC I+E + H V S + ++
Sbjct: 480 FSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP-------NTLQP 532
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
I S++++ V+VW++S ++ + + H V ++ S D +L ASG DG V LW +
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLA 591
Query: 692 QAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKI------- 744
+ L L +AN R + +H I +DL + I
Sbjct: 592 EGKKLYSL---------EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642
Query: 745 ------------PLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLS 782
P T S D +TL S TD +++W +
Sbjct: 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
S +++G +++WD++ H + V S+ FSS D + SGS D ++KLW+
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT---- 134
Query: 695 LLLHLGVSIGTIKTKAN---VCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLI 750
LGV T++ +++ V CV+F +S + D + ++L N K+ I
Sbjct: 135 ----LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHI 189
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
GH ++ V D + S D LWDL+
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 11/158 (6%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VW+++ ++ T H + ++ S D +L ASG DG LW +N+
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 223
Query: 693 AILLLHL--GVSIGTIKTKAN---VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
L L G I + N +C P S+ + +I +L+ I
Sbjct: 224 GKHLYTLDGGDIINALCFSPNRYWLCAATGP-----SIKIWDLEGKIIVDELKQEVISTS 278
Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
+ + S D TL + TDN +++W +++ T
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 316
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
++ H V I + P ++ S S D ++ +W + + + G+ ++ ++
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD--ETNYGIPQRALRGHSHFVSD 68
Query: 716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDN 774
G+ GS D + +DL +GH K V V F D +VS S D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTR-RFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 775 TLKLWD-LSMCTSRVID 790
T+KLW+ L +C V D
Sbjct: 128 TIKLWNTLGVCKYTVQD 144
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 738 DLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF 796
D N IP L GH+ VS V D +S S D TL+LWDL+ T+ F
Sbjct: 48 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT------RRF 101
Query: 797 TGHT 800
GHT
Sbjct: 102 VGHT 105
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 635 SSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAI 694
S +++G +++WD++ H + V S+ FSS D + SGS D ++KLW+
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT---- 157
Query: 695 LLLHLGVSIGTIKTKAN---VCCVQFPLDSGRSLAFGSA-DHRIYYYDLRNSKIPLCTLI 750
LGV T++ +++ V CV+F +S + D + ++L N K+ I
Sbjct: 158 ----LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK-TNHI 212
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
GH ++ V D + S D LWDL+
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 11/158 (6%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
I S ++ +V+VW+++ ++ T H + ++ S D +L ASG DG LW +N+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGKDGQAMLWDLNE 246
Query: 693 AILLLHL--GVSIGTIKTKAN---VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLC 747
L L G I + N +C P S+ + +I +L+ I
Sbjct: 247 GKHLYTLDGGDIINALCFSPNRYWLCAATGP-----SIKIWDLEGKIIVDELKQEVISTS 301
Query: 748 TLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCT 785
+ + S D TL + TDN +++W +++ T
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
++ H V I + P ++ S S D ++ +W + + + G+ ++ ++
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRD--ETNYGIPQRALRGHSHFVSD 91
Query: 716 QFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDN 774
G+ GS D + +DL +GH K V V F D +VS S D
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTR-RFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 775 TLKLWD-LSMCTSRVID 790
T+KLW+ L +C V D
Sbjct: 151 TIKLWNTLGVCKYTVQD 167
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 738 DLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF 796
D N IP L GH+ VS V D +S S D TL+LWDL+ T+ F
Sbjct: 71 DETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT------RRF 124
Query: 797 TGHT 800
GHT
Sbjct: 125 VGHT 128
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 644 VWDVSRSQVLTEMREHERRVWSIDFS-SADPTLLASGSDDGSVKLWSIN---QAILLLHL 699
VWD+ Q + HE V S+ + S D ASGSDD + +L+ + + +
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADREVAIYSKE 281
Query: 700 GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD-LRNSKIPLCTLIGHNKTVSY 758
+ G V F L SGR L G D+ I +D L+ S++ + L GH VS
Sbjct: 282 SIIFGASS-------VDFSL-SGRLLFAGYNDYTINVWDVLKGSRVSI--LFGHENRVST 331
Query: 759 VKFV-DATTLVSASTDNTLKLW 779
++ D T S S D+TL++W
Sbjct: 332 LRVSPDGTAFCSGSWDHTLRVW 353
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 641 VVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
+ VWDV + ++ + HE RV ++ S D T SGS D ++++W+
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRV-SPDGTAFCSGSWDHTLRVWA 354
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD++ + + + + H V + + +L
Sbjct: 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 246
Query: 676 LASGSDDGSVKLWSI-NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
S +DD + +W N V T A V C+ F S LA GSAD +
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSADKTV 302
Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
+DLRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 303 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
+R H++ + + ++ L S SDD ++ LW IN A H + I T
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVE 235
Query: 716 QFPLDSGRSLAFGSA--DHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKF--VDATTLVS 769
FGS D ++ +D RN+ P T+ H V+ + F L +
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 295
Query: 770 ASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
S D T+ LWDL R + LHSF H +
Sbjct: 296 GSADKTVALWDL-----RNLKLKLHSFESHKD 322
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 246 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD++ + + + + H V + + +L
Sbjct: 189 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 248
Query: 676 LASGSDDGSVKLWSI-NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
S +DD + +W N V T A V C+ F S LA GSAD +
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSADKTV 304
Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
+DLRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 305 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
+R H++ + + ++ L S SDD ++ LW IN A H + I T
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVE 237
Query: 716 QFPLDSGRSLAFGSA--DHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKF--VDATTLVS 769
FGS D ++ +D RN+ P T+ H V+ + F L +
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 297
Query: 770 ASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
S D T+ LWDL R + LHSF H +
Sbjct: 298 GSADKTVALWDL-----RNLKLKLHSFESHKD 324
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 248 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVS---RSQVLTEMRE----HERRVWSIDFSSADPTL 675
+ WN + + S++ + + +WD++ + + + + H V + + +L
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESL 250
Query: 676 LASGSDDGSVKLWSI-NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRI 734
S +DD + +W N V T A V C+ F S LA GSAD +
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHT----AEVNCLSFNPYSEFILATGSADKTV 306
Query: 735 YYYDLRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWDLS 782
+DLRN K+ L + H + V++ + T L S+ TD L +WDLS
Sbjct: 307 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 12/152 (7%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCV 715
+R H++ + + ++ L S SDD ++ LW IN A H + I T
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN-ATPKEHRVIDAKNIFTGHTAVVE 239
Query: 716 QFPLDSGRSLAFGSA--DHRIYYYDLRNSKI--PLCTLIGHNKTVSYVKF--VDATTLVS 769
FGS D ++ +D RN+ P T+ H V+ + F L +
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 770 ASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTN 801
S D T+ LWDL R + LHSF H +
Sbjct: 300 GSADKTVALWDL-----RNLKLKLHSFESHKD 326
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEM-ASRSKLSSICWNSYIKSQIASSNFEG 640
LF + ++K+ +++ N + P + A ++++ + +N Y + +A+ + +
Sbjct: 250 LFGSVADDQKLMIWDT-----RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 641 VVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
V +WD+ ++ L H+ ++ + +S + T+LAS D + +W +++
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 771
+ C+QF + G+ D I YD N K L L GH+ V +K+ LVS S
Sbjct: 125 ITCLQFE---DNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 772 TDNTLKLWDL--SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNEVFVY 827
TD T+++WD+ CT H F GH + + + + Y+ TGS N + V+
Sbjct: 181 TDRTVRVWDIKKGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 40/226 (17%)
Query: 665 SIDFSSADPTLLASGSDDGSVKLWSINQA----ILLLHLGVSIGTIKTKANVCCVQFPLD 720
S+ S ++ SGS D ++ +W + Q IL H TI C+
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS---- 327
Query: 721 SGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWD 780
S D I +DL N ++ + TL GH V ++ D LVSA+ D +++ WD
Sbjct: 328 -------ASMDTTIRIWDLENGEL-MYTLQGHTALVGLLRLSDKF-LVSAAADGSIRGWD 378
Query: 781 LSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNF 840
+ + + H HTN+ V D + +GSE N+ +Y+ S
Sbjct: 379 ANDYSRKF---SYH----HTNLSAITTFYVSDNILVSGSE-NQFNIYN------LRSGKL 424
Query: 841 NHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
HA+ L DA Q I SV ++G+ TLVAA LE++
Sbjct: 425 VHANILK-----DADQ-IWSVNFKGK---TLVAAVEKDGQSFLEIL 461
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 36/185 (19%)
Query: 639 EGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLH 698
+ +++V+D + L ++ H+ VW++ + A +L SGS D +V++W I +
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHV 198
Query: 699 LGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDL-RNSKIP------------ 745
T++ C + + + GS D+ ++ + L + S +P
Sbjct: 199 FEGHNSTVR-----CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253
Query: 746 ---------LCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSF 796
+ L GH +V V +VS S DNTL +WD++ L+
Sbjct: 254 HTPEENPYFVGVLRGHMASVRTVS-GHGNIVVSGSYDNTLIVWDVAQMKC------LYIL 306
Query: 797 TGHTN 801
+GHT+
Sbjct: 307 SGHTD 311
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 27/195 (13%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDF-SSADPTLLASGSDDGSVKLWSI- 690
+ S + + V+VWD+ + H V +D + + +GS D ++ +W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 691 -----------NQAILLLHLG----VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIY 735
+ L+ H +G ++ ++ V+ G + GS D+ +
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 736 YYDLRNSKIPLCTLIGH-NKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLH 794
+D+ K L L GH ++ S + + +SAS D T+++WDL ++
Sbjct: 294 VWDVAQMKC-LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN------GELMY 346
Query: 795 SFTGHTNVKNFVGLS 809
+ GHT + + LS
Sbjct: 347 TLQGHTALVGLLRLS 361
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 771
+ C+QF + G+ D I YD N K L L GH+ V +K+ LVS S
Sbjct: 125 ITCLQFE---DNYVITGADDKXIRVYDSINKKF-LLQLSGHDGGVWALKYAHGGILVSGS 180
Query: 772 TDNTLKLWDL--SMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDG--YVATGSETNEVFVY 827
TD T+++WD+ CT H F GH + + + + Y+ TGS N + V+
Sbjct: 181 TDRTVRVWDIKKGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 98/235 (41%), Gaps = 43/235 (18%)
Query: 656 MREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA----ILLLHLGVSIGTIKTKAN 711
+R H V ++ S ++ SGS D ++ +W + Q IL H TI
Sbjct: 266 LRGHXASVRTV---SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER 322
Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSAS 771
C+ S D I +DL N ++ TL GH V ++ D LVSA+
Sbjct: 323 KRCIS-----------ASXDTTIRIWDLENGELXY-TLQGHTALVGLLRLSDKF-LVSAA 369
Query: 772 TDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAF 831
D +++ WD + + + H HTN+ V D + +GSE N+ +Y+
Sbjct: 370 ADGSIRGWDANDYSRKF---SYH----HTNLSAITTFYVSDNILVSGSE-NQFNIYN--- 418
Query: 832 PMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEMV 886
S HA+ L DA Q I SV ++G+ TLVAA LE++
Sbjct: 419 ---LRSGKLVHANILK-----DADQ-IWSVNFKGK---TLVAAVEKDGQSFLEIL 461
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 36/182 (19%)
Query: 642 VQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGV 701
++V+D + L ++ H+ VW++ + A +L SGS D +V++W I +
Sbjct: 144 IRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFEG 201
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDL-RNSKIP--------------- 745
T++ C + + + GS D+ ++ + L + S +P
Sbjct: 202 HNSTVR-----CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256
Query: 746 ------LCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH 799
+ L GH +V V +VS S DNTL +WD++ L+ +GH
Sbjct: 257 EENPYFVGVLRGHXASVRTVS-GHGNIVVSGSYDNTLIVWDVAQXKC------LYILSGH 309
Query: 800 TN 801
T+
Sbjct: 310 TD 311
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDF-SSADPTLLASGSDDGSVKLWSI- 690
+ S + + V+VWD+ + H V +D + + +GS D ++ +W +
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 691 -----------NQAILLLHLG----VSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIY 735
+ L+ H +G ++ + V+ G + GS D+ +
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 736 YYDLRNSKIPLCTLIGH-NKTVSYVKFVDATTLVSASTDNTLKLWDL 781
+D+ K L L GH ++ S + + +SAS D T+++WDL
Sbjct: 294 VWDVAQXKC-LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
V +W S +L +M + + S+ + + LA G+ V+LW + Q L ++
Sbjct: 138 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
Query: 700 ---GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 756
+G++ + + L+ GS I+++D+R ++ + TL GH++ V
Sbjct: 197 TSHSARVGSLSWNSYI------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 244
Query: 757 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
+++ D L S DN + +W + + PL +FT H V W V
Sbjct: 245 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNV 302
Query: 816 -ATGSETNEVFV 826
ATG T++ +
Sbjct: 303 LATGGGTSDRHI 314
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%)
Query: 632 QIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASG--SDDGSV 685
+AS + +V VW + + L +H+ V ++ + +LA+G + D +
Sbjct: 255 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 686 KLWSINQAILLLHLGVSIGTIKTKANVCCVQFP-----LDSGRSLAFGSADHRIYYYDLR 740
++W++ G + + + VC + + L SG F I+ Y
Sbjct: 315 RIWNVCS-------GACLSAVDAHSQVCSILWSPHYKELISGH--GFAQNQLVIWKYP-- 363
Query: 741 NSKIPLCTLIGH-NKTVSYVKFVDATTLVSASTDNTLKLW 779
+ + L GH ++ +S D T+ SA+ D TL+LW
Sbjct: 364 -TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 22/192 (11%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
V +W S +L +M + + S+ + + LA G+ V+LW + Q L ++
Sbjct: 127 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
Query: 700 ---GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 756
+G++ + + L+ GS I+++D+R ++ + TL GH++ V
Sbjct: 186 TSHSARVGSLSWNSYI------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233
Query: 757 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
+++ D L S DN + +W + + PL +FT H V W V
Sbjct: 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNV 291
Query: 816 -ATGSETNEVFV 826
ATG T++ +
Sbjct: 292 LATGGGTSDRHI 303
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%)
Query: 632 QIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASG--SDDGSV 685
+AS + +V VW + + L +H+ V ++ + +LA+G + D +
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 686 KLWSINQAILLLHLGVSIGTIKTKANVCCVQFP-----LDSGRSLAFGSADHRIYYYDLR 740
++W++ G + + + VC + + L SG F I+ Y
Sbjct: 304 RIWNVCS-------GACLSAVDAHSQVCSILWSPHYKELISGH--GFAQNQLVIWKYP-- 352
Query: 741 NSKIPLCTLIGH-NKTVSYVKFVDATTLVSASTDNTLKLW 779
+ + L GH ++ +S D T+ SA+ D TL+LW
Sbjct: 353 -TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 104/260 (40%), Gaps = 64/260 (24%)
Query: 576 FDRDGELFAAAGVNKKIKV-----FEC--------------------DAIINENRDIHYP 610
FD G+L A+ + IK+ FEC D I++ +RD
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 611 VVEMASRSKLSSIC----WNSYIK-----SQIASSNFEGVVQVWDVSRSQVLTEMREHER 661
+ E+ + + + W ++ + IAS + + V+VW V+ + E+REH
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 662 RVWSIDFS------------------SADP-TLLASGSDDGSVKLWSINQAILLLHLGVS 702
V I ++ S P L SGS D ++K+W ++ + L+ L
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL--- 334
Query: 703 IGTIKTKANVCCVQFPLDSGRSLAFGSADHR-IYYYDLRNSKIPLCTLIGHNKTVSYVKF 761
+G V SG AD + + +D +N + + TL H V+ + F
Sbjct: 335 VGHDNWVRGVL-----FHSGGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDF 388
Query: 762 -VDATTLVSASTDNTLKLWD 780
A +V+ S D T+K+W+
Sbjct: 389 HKTAPYVVTGSVDQTVKVWE 408
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 674 TLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHR 733
+++ S S+D ++K+W L +++ + F SG+ LA SAD
Sbjct: 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD------ISFD-HSGKLLASCSADMT 173
Query: 734 IYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTP 792
I +D + + + T+ GH+ VS V + + +VSAS D T+K+W++ T + T
Sbjct: 174 IKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ--TGYCVKT- 229
Query: 793 LHSFTGH 799
FTGH
Sbjct: 230 ---FTGH 233
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 634 ASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQA 693
ASS+ + +++WD+ + + + W++ F S D LA+G+ G V ++ +
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAF-SPDSQYLATGTHVGKVNIFGVES- 153
Query: 694 ILLLHLGVSIGTIKTKAN-VCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGH 752
G ++ T+ + + + D G+ LA G+ D I +D+ K+ L TL GH
Sbjct: 154 ------GKKEYSLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKL-LHTLEGH 205
Query: 753 NKTVSYVKFV-DATTLVSASTDNTLKLWDL 781
+ + F D+ LV+AS D +K++D+
Sbjct: 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
+ V S+D +++ SGS D ++K+W+I L LG + ++ V +
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
D ++ D + ++L +I IGHN ++ + D T + SA D + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
W+L+
Sbjct: 223 WNLA 226
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+A+ L + ++ N + +G + S D + DLR
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPE------FA 279
Query: 751 GHNK-----TVSYVKFVDATTLVSASTDNTLKLW 779
G++K VS D TL + TDN +++W
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 748 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT-GDDQKFGVPVRSFKGHSHIVQD 70
Query: 806 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 833
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
+ V S+D +++ SGS D ++K+W+I L LG + ++ V +
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
D ++ D + ++L +I IGHN ++ + D T + SA D + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
W+L+
Sbjct: 223 WNLA 226
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+A+ L + ++ N + +G + S D + DLR + +
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLR-PEFAGYSAA 284
Query: 751 GHNKTVSYVKFVDATTLVSASTDNTLKLWDL 781
VS D TL + TDN +++W +
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 748 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 806 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 833
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
+ V S+D +++ SGS D ++K+W+I L LG + ++ V +
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
D ++ D + ++L +I IGHN ++ + D T + SA D + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
W+L+
Sbjct: 223 WNLA 226
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+A+ L + ++ N + +G + S D + DLR
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPE------FA 279
Query: 751 GHNK-----TVSYVKFVDATTLVSASTDNTLKLWDL 781
G++K VS D TL + TDN +++W +
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 748 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 806 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 833
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 41 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
+ V S+D +++ SGS D ++K+W+I L LG + ++ V +
Sbjct: 101 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 157
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
D ++ D + ++L +I IGHN ++ + D T + SA D + L
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 216
Query: 779 WDLS 782
W+L+
Sbjct: 217 WNLA 220
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 221
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+A+ L + ++ N + +G + S D + DLR
Sbjct: 222 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPE------FA 273
Query: 751 GHNK-----TVSYVKFVDATTLVSASTDNTLKLWDL 781
G++K VS D TL + TDN +++W +
Sbjct: 274 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 748 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 64
Query: 806 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 833
L+ +WD VATG ET + FV HK+ M
Sbjct: 65 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 105
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
+ V S+D +++ SGS D ++K+W+I L LG + ++ V +
Sbjct: 107 KSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
D ++ D + ++L +I IGHN ++ + D T + SA D + L
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIML 222
Query: 779 WDLS 782
W+L+
Sbjct: 223 WNLA 226
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
I S+ + +V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIMLWNLAA 227
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+A+ L + ++ N + +G + S D + DLR
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPE------FA 279
Query: 751 GHNK-----TVSYVKFVDATTLVSASTDNTLKLWDL 781
G++K VS D TL + TDN +++W +
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 748 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 806 VGLS----------------VWDGYVATGSETNEVFVYHKAFPM 833
L+ +WD VATG ET + FV HK+ M
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKSDVM 111
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 22/189 (11%)
Query: 642 VQVWDVSRSQVLT--EMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHL 699
V +W S +L +M + + S+ + + LA G+ V+LW + Q L ++
Sbjct: 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNM 105
Query: 700 ---GVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTV 756
+G++ + + L+ GS I+++D+R ++ + TL GH++ V
Sbjct: 106 TSHSARVGSLSWNSYI------------LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 153
Query: 757 SYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVWDGYV 815
+++ D L S DN + +W + + PL +FT H V W V
Sbjct: 154 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNV 211
Query: 816 -ATGSETNE 823
ATG T++
Sbjct: 212 LATGGGTSD 220
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 24/160 (15%)
Query: 632 QIASSNFEGVVQVWDVSRSQ----VLTEMREHERRVWSIDFSSADPTLLASG--SDDGSV 685
+AS + +V VW + + L +H+ V ++ + +LA+G + D +
Sbjct: 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 686 KLWSINQAILLLHLGVSIGTIKTKANVCCVQFP-----LDSGRSLAFGSADHRIYYYDLR 740
++W++ G + + + VC + + L SG F I+ Y
Sbjct: 224 RIWNVCS-------GACLSAVDAHSQVCSILWSPHYKELISGH--GFAQNQLVIWKYP-- 272
Query: 741 NSKIPLCTLIGH-NKTVSYVKFVDATTLVSASTDNTLKLW 779
+ + L GH ++ +S D T+ SA+ D TL+LW
Sbjct: 273 -TMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D+Y LG++ FE+ PFSTG E+ + LR + PP
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D+Y LG++ FE+ PFSTG E+ + LR + PP
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 38/210 (18%)
Query: 595 FECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLT 654
+ C A+ + RD +P V R + ++ W + SS+F+ ++VWD + Q
Sbjct: 82 YTCKAVCSIGRD--HPDVH---RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-A 135
Query: 655 EMREHERRVWSIDFS--SADPTLLASGSDDGSVKLWSINQA----ILLLHLGVSIGTIKT 708
++ E V+S S S L+A G+ V+L + IL H
Sbjct: 136 DVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH---------- 185
Query: 709 KANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL---------------IGHN 753
+ + V + LA SAD R+ +D+R + L TL HN
Sbjct: 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245
Query: 754 KTVSYVKFV-DATTLVSASTDNTLKLWDLS 782
V+ + F D L++ TDN ++LW+ S
Sbjct: 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
V R Q+ T +R H +++++ + + D LL S S DG + +W + N+ V
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
+++ + C P SG +A G D+ Y+L+ N ++ L GH +S
Sbjct: 91 HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
+F+D +V++S D T LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+ + + ++ N C FP +G + A GS D +DLR + L T
Sbjct: 214 REGMCRQ----TFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYS 265
Query: 751 GHNKT--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
N ++ V F + L+ A D+ +WD ++ R GH N + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLG 319
Query: 808 LSVWDGYVATGS 819
++ VATGS
Sbjct: 320 VTDDGMAVATGS 331
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
V R Q+ T +R H +++++ + + D LL S S DG + +W + N+ V
Sbjct: 51 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK--------V 101
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
+++ + C P SG +A G D+ Y+L+ N ++ L GH +S
Sbjct: 102 HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 158
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
+F+D +V++S D T LWD+
Sbjct: 159 CCRFLDDNQIVTSSGDTTCALWDI 182
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 224
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+ + + ++ N C FP +G + A GS D +DLR + L T
Sbjct: 225 REGMCR----QTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYS 276
Query: 751 GHNKT--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
N ++ V F + L+ A D+ +WD ++ R GH N + +G
Sbjct: 277 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLG 330
Query: 808 LSVWDGYVATGS 819
++ VATGS
Sbjct: 331 VTDDGMAVATGS 342
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
V R Q+ T +R H +++++ + + D LL S S DG + +W + N+ V
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
+++ + C P SG +A G D+ Y+L+ N ++ L GH +S
Sbjct: 91 HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
+F+D +V++S D T LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+ + + ++ N C FP +G + A GS D +DLR + L T
Sbjct: 214 REGMCRQ----TFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYS 265
Query: 751 GHNKT--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
N ++ V F + L+ A D+ +WD ++ R GH N + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLG 319
Query: 808 LSVWDGYVATGS 819
++ VATGS
Sbjct: 320 VTDDGMAVATGS 331
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 80/184 (43%), Gaps = 5/184 (2%)
Query: 600 IINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREH 659
+ +++ PV S + C + + S++++ +++WDV+ + H
Sbjct: 47 LTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 660 ERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL 719
+ V S+D ++ SGS D ++K+W+I L LG + ++ V +
Sbjct: 107 KSDVXSVDIDKKASXII-SGSRDKTIKVWTIKGQCLATLLGHN--DWVSQVRVVPNEKAD 163
Query: 720 DSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKL 778
D ++ D + ++L +I IGHN ++ + D T + SA D + L
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIXL 222
Query: 779 WDLS 782
W+L+
Sbjct: 223 WNLA 226
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 68/159 (42%), Gaps = 16/159 (10%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI-- 690
I S+ + V+ W++++ Q+ + H + ++ +S D TL+AS DG + LW++
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT-ASPDGTLIASAGKDGEIXLWNLAA 227
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+A L + ++ N + +G + S D + DLR
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPE------FA 279
Query: 751 GHNK-----TVSYVKFVDATTLVSASTDNTLKLWDLSMC 784
G++K VS D TL + TDN +++W +
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 22/101 (21%)
Query: 748 TLIGHNKTVSYVKFVDA--TTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNF 805
TL GHN V+ + L+SAS D TL W L+ + P+ SF GH+++
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK-FGVPVRSFKGHSHIVQD 70
Query: 806 VGLS----------------VWDGYVATGSETNEVFVYHKA 830
L+ +WD VATG ET + FV HK+
Sbjct: 71 CTLTADGAYALSASWDKTLRLWD--VATG-ETYQRFVGHKS 108
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
V R Q+ T +R H +++++ + + D LL S S DG + +W + N+ V
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
+++ + C P SG +A G D+ Y+L+ N ++ L GH +S
Sbjct: 91 HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
+F+D +V++S D T LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+ + + ++ N C FP +G + A GS D +DLR + L T
Sbjct: 214 REGMCR----QTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYS 265
Query: 751 GHNKT--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
N ++ V F + L+ A D+ +WD ++ R GH N + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLG 319
Query: 808 LSVWDGYVATGS 819
++ VATGS
Sbjct: 320 VTDDGMAVATGS 331
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 21/144 (14%)
Query: 647 VSRSQVLTE--MREHERRVWSIDFSSADPTLLASGSDDGSVKLW---SINQAILLLHLGV 701
V R Q+ T +R H +++++ + + D LL S S DG + +W + N+ V
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNK--------V 90
Query: 702 SIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR----NSKIPLCTLIGHNKTVS 757
+++ + C P SG +A G D+ Y+L+ N ++ L GH +S
Sbjct: 91 HAIPLRSSWVMTCAYAP--SGNYVACGGLDNICSIYNLKTREGNVRVSR-ELAGHTGYLS 147
Query: 758 YVKFVDATTLVSASTDNTLKLWDL 781
+F+D +V++S D T LWD+
Sbjct: 148 CCRFLDDNQIVTSSGDTTCALWDI 171
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+QI +S+ + +WD+ Q T H V S+ + D L SG+ D S KLW +
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 691 NQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLI 750
+ + + ++ N C FP +G + A GS D +DLR + L T
Sbjct: 214 REGMCR----QTFTGHESDINAICF-FP--NGNAFATGSDDATCRLFDLRADQ-ELMTYS 265
Query: 751 GHNKT--VSYVKFVDATTLVSASTDN-TLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVG 807
N ++ V F + L+ A D+ +WD ++ R GH N + +G
Sbjct: 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-ALKADRA-----GVLAGHDNRVSCLG 319
Query: 808 LSVWDGYVATGS 819
++ VATGS
Sbjct: 320 VTDDGMAVATGS 331
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 23/182 (12%)
Query: 618 SKLSSICWNSYIKSQIASSNFEGVVQVWDVSR-------------SQVLTEMREHERRVW 664
S + ++ +N+ + +AS G + +WD+++ Q ++ + E W
Sbjct: 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173
Query: 665 SIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQF-PLDSGR 723
+ + + AS +W + ++HL + K + V++ P +S R
Sbjct: 174 NQSLAH----VFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229
Query: 724 -SLAFGS-ADHRIYYYDLRNSKIPLCTL-IGHNKTVSYVKFV--DATTLVSASTDNTLKL 778
+ A GS D I +DLRN+ PL TL GH K + + + D L+S+ DNT+ L
Sbjct: 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289
Query: 779 WD 780
W+
Sbjct: 290 WN 291
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 582 LFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS---SNF 638
+FA+AG + +++ A E + Y + +LS + W+ +++A+ S+
Sbjct: 180 VFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238
Query: 639 EGVVQVWDV--SRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILL 696
+ + +WD+ + + + T + H++ + S+D+ D LL S D +V LW+ A L
Sbjct: 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
Query: 697 LHLGVSIGTIKTKANVCC-VQFPLDSGRSLAFGSADHRIYYYDLRN 741
+ N C +F ++ A S D++I L+N
Sbjct: 299 SQF-------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 235 TNWYASPEELAG-APVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL--PPQL 291
T Y + E L G + D Y LG++ FE PFSTG E+ + LR + PP
Sbjct: 193 TAXYVATEVLDGTGHYNEKIDXYSLGIIFFEXIYPFSTGXERVNILKKLRSVSIEFPPDF 252
Query: 292 -LLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
K E L+ +P+ RP LL S +L
Sbjct: 253 DDNKXKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 83 ECLHIFRQIVEIVYAAHSQGIVVHNVRP-SCFVMSSFN 119
E +FRQI+E + HSQGI+ N++P + F+ S N
Sbjct: 117 EYWRLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRN 154
>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
Catalytic Domain Apo Form
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
Mutant In Complex With Sp600125 Inhibitor
Length = 390
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
Length = 343
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 81 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 139
Query: 114 VM 115
++
Sbjct: 140 LI 141
>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With Atp
pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With The Inhibitor Staurosporine
pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With A Quinazolin Ligand Compound 4
Length = 342
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 128 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 186
Query: 114 VM 115
++
Sbjct: 187 LI 188
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y SPE+++ D+Y LG++L EL T E ++ + LR ++ + K
Sbjct: 187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD---IFDKK 243
Query: 298 EASFCLWLLHPEPSGRPKMGELLQS 322
E + LL +P RP E+L++
Sbjct: 244 EKTLLQKLLSKKPEDRPNTSEILRT 268
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y SPE+++ D+Y LG++L EL T E ++ + LR ++ + K
Sbjct: 201 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISD---IFDKK 257
Query: 298 EASFCLWLLHPEPSGRPKMGELLQS 322
E + LL +P RP E+L++
Sbjct: 258 EKTLLQKLLSKKPEDRPNTSEILRT 282
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 676 LASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRS-LAFGSADHRI 734
+AS S DG+V+LWS + LG + T + N C DS + L FG D I
Sbjct: 32 VASVSRDGTVRLWSKDDQ----WLGTVVYTGQGFLNSVC----YDSEKELLLFGGKDTXI 83
Query: 735 YYYDL--RNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 779
L + + PL TLIGH V + F D ++S S D T K+W
Sbjct: 84 NGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG-VVISGSWDKTAKVW 129
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 12/158 (7%)
Query: 622 SICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD 681
++C S+ + S +++ +VW ++ ++ H VW S + S
Sbjct: 106 NVCSLSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163
Query: 682 DGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRN 741
D ++KLW N ++ G+ ++ A V D G ++ S D I D
Sbjct: 164 DKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVV-------DDGHFISC-SNDGLIKLVDXHT 214
Query: 742 SKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLW 779
+ L T GH V +K + +VS D T+++W
Sbjct: 215 GDV-LRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW 251
>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(ttk)
pdb|3GFW|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrolo-Pyridin Ligand
Length = 313
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 100 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158
Query: 114 VM 115
++
Sbjct: 159 LI 160
>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
Length = 317
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 84 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 142
Query: 114 VM 115
++
Sbjct: 143 LI 144
>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase
(Ttk) In Complex With A Pyrimido-Diazepin Ligand
Length = 313
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 100 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 158
Query: 114 VM 115
++
Sbjct: 159 LI 160
>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2-
Yl)amino]benzamide
Length = 320
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 55 DPFVHAI-EWGDVSLRQWLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCF 113
D +++ + E G++ L WL K K+S+D +E ++ ++E V+ H GIV +++P+ F
Sbjct: 80 DQYIYMVMECGNIDLNSWLKK-KKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANF 138
Query: 114 VM 115
++
Sbjct: 139 LI 140
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 717 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVD-ATTLVSASTDNT 775
FP SG +L S D ++ + +++ P TLIGH TV+ + +D ++SAS D T
Sbjct: 145 FP--SGEALISSSQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIIDRGRNVLSASLDGT 201
Query: 776 LKLWDLSMCTSRVIDTPLHSF 796
++LW+ T+ +H+F
Sbjct: 202 IRLWECGTGTT------IHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 717 FPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVD-ATTLVSASTDNT 775
FP SG +L S D ++ + +++ P TLIGH TV+ + +D ++SAS D T
Sbjct: 148 FP--SGEALISSSQDMQLKIWSVKDGSNPR-TLIGHRATVTDIAIIDRGRNVLSASLDGT 204
Query: 776 LKLWDLSMCTSRVIDTPLHSF 796
++LW+ T+ +H+F
Sbjct: 205 IRLWECGTGTT------IHTF 219
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 633 IASSNFEGVVQVWDVSRSQV-LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+A+ +G++ +WDV + + ++ ++ HE +W + F ++P L + S+DGS+ W
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 12 GVRGDDSNDFELRKHSD---GVELTHGDHLRNQG--GLSGVCENEAA--IDPFVHAIEWG 64
G + + + F + +H D G+ L+HG HL + SGV N A +DP H I++
Sbjct: 94 GAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYD 153
Query: 65 DVSLRQWLDKPKRSVDVYEC------LHIFRQIVEIVYA------AHSQGIVVHNVRPSC 112
DV + L +PK V FR+I + V A AH G+V + P+
Sbjct: 154 DVREKARLHRPKLIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNP 213
Query: 113 FVMSSF 118
+ F
Sbjct: 214 VPYAHF 219
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 227 MKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRV 286
+K+ + T ++ +PE + + +DI+ LG+ EL + GE M +R
Sbjct: 175 IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIEL----AKGEPPNSDMHPMRVLF 230
Query: 287 L-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSEFL 325
L PP L+ F K F L+ +PS RP ELL+ +F+
Sbjct: 231 LIPKNNPPTLVGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFI 275
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 611 VVEMASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSS 670
+ E + ++S+ W S+ S ++ G+V ++DV L M H+ RV + ++
Sbjct: 128 LAETDESTYVASVKW-SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR 186
Query: 671 ADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSA 730
+L+SGS G++ + A IGT++ ++ C G LA G
Sbjct: 187 H---VLSSGSRSGAIHHHDVRIA------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237
Query: 731 DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKF 761
D+ + +D R+S IP T HN V V +
Sbjct: 238 DNVVQIWDARSS-IPKFTKTNHNAAVKAVAW 267
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 638 FEGVVQVWDVSRSQV--LTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
E V VW+ V L E E V S+ +S D + L+ G +G V ++ +
Sbjct: 111 LERNVYVWNADSGSVSALAETDE-STYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTK 168
Query: 696 LLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTLIGHNKT 755
L + +A V C+ + + L+ GS I+++D+R + + TL GH+
Sbjct: 169 LRTMA------GHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219
Query: 756 VSYVKF-VDATTLVSASTDNTLKLWD 780
V + + D L S DN +++WD
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWD 245
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 12/153 (7%)
Query: 632 QIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSD--DGSVKLWS 689
Q+AS + VVQ+WD S H V ++ + LLA+G D + W
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW- 289
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLA-FGSADHRIYYYDLRNSKIPLCT 748
N A G + T+ + V + + S ++ G D+ + + +S +
Sbjct: 290 -NAAT-----GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343
Query: 749 LI-GHNKTVSYVKFV-DATTLVSASTDNTLKLW 779
I H+ V Y D L +A++D LK W
Sbjct: 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 761 FVDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLSVW-DGYVATGS 819
F D T VS D ++K+WDLS L S+ H++ N V D +
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQ------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 820 ETNEVFVYHKAFPMPALSFNFNHADPLSGPETDDAAQFISSVCWRGQSSNTLVAANSSGN 879
E + ++ P PA +F +D + +SV W + +T + +GN
Sbjct: 202 EDGRILLWDTRKPKPATRIDFCASDTIP-----------TSVTWHPEKDDTFACGDETGN 250
Query: 880 IKILEM 885
+ ++ +
Sbjct: 251 VSLVNI 256
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
+Q S + V+VWD+S+ VL H V + T+ S +DG + LW
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 614 MASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMR----EHERRVWSIDFS 669
+ + + ++ + W S +AS + G V++W++ + L + EH+ V ++
Sbjct: 91 VQTEAGVTDVAWVSEKGILVASDS--GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF 148
Query: 670 SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
S D T SG D SVK+W ++Q +L + C P G+ F S
Sbjct: 149 S-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-----CVAACP---GKDTIFLS 199
Query: 730 A--DHRIYYYDLRNSK 743
D RI +D R K
Sbjct: 200 CGEDGRILLWDTRKPK 215
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 576 FDRDGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIAS 635
+ DG A +K + ++E D E I V++ S+ + + W+ ++ +AS
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECI--SVLQEHSQD-VKHVIWHPS-EALLAS 170
Query: 636 SNFEGVVQVWDVSRS--QVLTEMREHERRVWSIDFSSADPTL-LASGSDDGSVKLW 688
S+++ V++W + + + HE VWS DF + L SGSDD +V++W
Sbjct: 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 652 VLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKAN 711
++ ++ ++ ++WS DFS +LA+GS D +KL S+ L + V T KA
Sbjct: 6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL-IDVLDETAHKKAI 61
Query: 712 VCCVQFPLDSGRSLAFGSADHRIYYYDL-----RNSKIPLCTLI-GHNKTVSYVKFV-DA 764
P S LA GS D + + R ++ L +I GH V V + D
Sbjct: 62 RSVAWRPHTS--LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 765 TTLVSASTDNTLKLWD 780
L + S D ++ +W+
Sbjct: 120 YYLATCSRDKSVWIWE 135
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 176 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 234
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 235 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 273
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 187 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 245
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 246 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 284
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 180 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 238
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 239 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 277
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 16/186 (8%)
Query: 630 KSQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWS 689
K+ I S++ +G + VW+ SQ ++ H V F+ ++ G D
Sbjct: 78 KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137
Query: 690 INQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLR--------N 741
+QA ++ VS K Q+ D L GS D +D+
Sbjct: 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG 197
Query: 742 SKIPLCTLIGHNKTVSYVKF--VDATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGH 799
S+ P GH V + ++A +S S D T++LWDL + TSR + T H G
Sbjct: 198 SEFP----SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI-TSRAVRT-YHGHEGD 251
Query: 800 TNVKNF 805
N F
Sbjct: 252 INSVKF 257
>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase
In Yeast
pdb|2JD5|A Chain A, Sky1p Bound To Npl3p-Derived Substrate Peptide
pdb|2JD5|B Chain B, Sky1p Bound To Npl3p-Derived Substrate Peptide
Length = 373
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC 267
++T Y SPE L GAP C +DI+ L+FEL
Sbjct: 196 IQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 185 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 243
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 244 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 282
>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Y|B Chain B, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With
Bound Adp
pdb|1Q8Z|A Chain A, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q8Z|B Chain B, The Apoenzyme Structure Of The Yeast Sr Protein Kinase,
Sky1p
pdb|1Q97|A Chain A, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q97|B Chain B, The Structure Of The Saccharomyces Cerevisiae Sr Protein
Kinase, Sky1p, With Bound Atp
pdb|1Q99|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
pdb|1Q99|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Sr
Protein Kinsae, Sky1p, Complexed With The
Non-Hydrolyzable Atp Analogue, Amp-Pnp
Length = 373
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC 267
++T Y SPE L GAP C +DI+ L+FEL
Sbjct: 196 IQTREYRSPEVLLGAPWGCGADIWSTACLIFELIT 230
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPDSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS 253
T +LVE KI D + + + + K+ F +K+ WYA PE L + S AS
Sbjct: 141 ATRNILVENENRVKIGDFGL-TKVLPQDKEFFKVKEPGESPIFWYA-PESLTESKFSVAS 198
Query: 254 DIYRLGVLLFELF 266
D++ GV+L+ELF
Sbjct: 199 DVWSFGVVLYELF 211
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 24/188 (12%)
Query: 609 YPVVEMASRSKLSSICWNSYIKSQIASSN---FEGV------VQVWDVSRSQVLTEMRE- 658
Y + + S KL+ + SY S +A SN F V V V+ +S + V +E++
Sbjct: 431 YKHIAIYSHGKLTEVPI-SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV-SEVKTI 488
Query: 659 -HERRVWSIDFSSADPTLLASGSDDGSVKL--WSINQAILLLHLGVSIGTIKTKANVCCV 715
H + S+ FS+ L+A+ D S K+ +S+ L H + T T A V CV
Sbjct: 489 VHPAEITSVAFSNNGAFLVAT---DQSRKVIPYSVANNFELAH--TNSWTFHT-AKVACV 542
Query: 716 QFPLDSGRSLAFGSADHRIYYYDL-RNSKIPLCTLIGHN-KTVSYVKFVDATTLVSASTD 773
+ D+ R LA GS D+ + +++ + S P+ H +V+ V +++ TT+VSA D
Sbjct: 543 SWSPDNVR-LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 601
Query: 774 NTLKLWDL 781
+ +K W++
Sbjct: 602 SNIKFWNV 609
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 670 SADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS 729
S+ P LA S DG + + + + I + G + + N CV D + +A G
Sbjct: 411 SSQPLGLAV-SADGDIAVAACYKHIAIYSHG-KLTEVPISYNSSCVALSNDK-QFVAVGG 467
Query: 730 ADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSMCTSRVI 789
D +++ Y L + + I H ++ V F + + A TD + K+ S+ + +
Sbjct: 468 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA-TDQSRKVIPYSVANNFEL 526
Query: 790 DTPLHSFTGHTNVKNFVGLSVWDGYVATGSETNEVFVYHKAFPMPALSFNFNHADPLSGP 849
+S+T HT V S + +ATGS N V V++ P +H + G
Sbjct: 527 -AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS-------DHPIIIKGA 578
Query: 850 ETDDAAQFISSVCWRGQSSNTLVAANSSGNIKILEM 885
A ++SV W ++ T+V+A NIK +
Sbjct: 579 H---AMSSVNSVIWLNET--TIVSAGQDSNIKFWNV 609
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 230 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 288
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 289 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 327
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 186 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 245
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 246 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 281
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 196 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 255
Query: 289 P 289
P
Sbjct: 256 P 256
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRVLPP 289
L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R LPP
Sbjct: 307 LVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDN-LPP 365
Query: 290 QL--LLKF-PKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
+L L K P F LL +P+ R ELL+ FL
Sbjct: 366 RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFL 404
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L S DI+ LG +L+ L PF T K + ++
Sbjct: 202 LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIRIKKNEYSV 261
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P ++ +LH +P+ RP + ELL EF
Sbjct: 262 PRHI--NPVASALIRRMLHADPTLRPSVAELLTDEFFT 297
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071
Length = 360
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ L K
Sbjct: 186 YIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIMEHNVSYPKSLSK 245
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ S C L+ P+ R
Sbjct: 246 --EAVSICKGLMTKHPAKR 262
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
++ T Y SPE+ G V SD+Y LG +L+E+ PF+ + +R +P
Sbjct: 179 VIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIP 238
Query: 289 P 289
P
Sbjct: 239 P 239
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELF 211
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 182 WYA-PESLTESKFSVASDVWSFGVVLYELF 210
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 194 GTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCAS 253
T +LVE KI D + + + + K+ + +K+ WYA PE L + S AS
Sbjct: 142 ATRNILVENENRVKIGDFGL-TKVLPQDKEYYKVKEPGESPIFWYA-PESLTESKFSVAS 199
Query: 254 DIYRLGVLLFELF 266
D++ GV+L+ELF
Sbjct: 200 DVWSFGVVLYELF 212
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELF 229
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 201 WYA-PESLTESKFSVASDVWSFGVVLYELF 229
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 181 WYA-PESLTESKFSVASDVWSFGVVLYELF 209
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 214 WYA-PESLTESKFSVASDVWSFGVVLYELF 242
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 188 WYA-PESLTESKFSVASDVWSFGVVLYELF 216
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 183 WYA-PESLTESKFSVASDVWSFGVVLYELF 211
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 190 WYA-PESLTESKFSVASDVWSFGVVLYELF 218
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 187 WYA-PESLTESKFSVASDVWSFGVVLYELF 215
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 189 WYA-PESLTESKFSVASDVWSFGVVLYELF 217
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L + S ASD++ GV+L+ELF
Sbjct: 186 WYA-PESLTESKFSVASDVWSFGVVLYELF 214
>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
pdb|2I0E|B Chain B, Structure Of Catalytic Domain Of Human Protein Kinase C
Beta Ii Complexed With A Bisindolylmaleimide Inhibitor
Length = 353
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ + K
Sbjct: 187 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSK 246
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ + C L+ P R
Sbjct: 247 --EAVAICKGLMTKHPGKR 263
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 171 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 230
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 231 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 270
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 200 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 259
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 260 AHILDQAPKARKF 272
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 279 AHILDQAPKARKF 291
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 233 METNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHRV-LPP 289
+++ +Y SPE L G P A D++ LG +L E+ P +G + M+ + + +PP
Sbjct: 219 IQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPP 278
Query: 290 -QLLLKFPKEASF 301
+L + PK F
Sbjct: 279 AHILDQAPKARKF 291
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 195 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 254
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 255 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 294
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRH 284
++ +L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 197 RKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN 256
Query: 285 RVLPPQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 257 EYSIPKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 296
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF---CPFSTGEEKTRTMSSLRHRVLPPQLLLK 294
Y +PE +A P + D + GVLL+E+ PF +E S + H V P+ + K
Sbjct: 508 YIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSK 567
Query: 295 FPKEASFCLWLLHPEPSGR 313
+ + C L+ P R
Sbjct: 568 --EAVAICKGLMTKHPGKR 584
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
I W + + IAS + + V VW++ ++ +RE H +RV + + +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 676 LASGSDDGSVKLWSINQAILLLHLGVSI 703
L S D + +W + +L LG +
Sbjct: 147 LLSAGXDNVILVWDVGTGAAVLTLGPDV 174
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 725 LAFGSADHRIYYYDLRNSKI------PLCTLIGHNKTVSYVKF--VDATTLVSASTDNTL 776
+A GS D + +++ + + P+ TL GH K V V + L+SA DN +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 777 KLWDLS 782
+WD+
Sbjct: 157 LVWDVG 162
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 596 ECDAIINENRD------IHYPVVEMASRSK-LSSICWNSYIKSQIASSNFEGVVQVWDVS 648
+C ++ E D + PV+ + +K + + W+ ++ + S+ + V+ VWDV
Sbjct: 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG 162
Query: 649 RSQVLTEMRE--HERRVWSIDFSSADPTLLASGSDDGSVKL 687
+ + H ++S+D+S D L+ + D V++
Sbjct: 163 TGAAVLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRV 202
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 177 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 236
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 237 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 272
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 177 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 236
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 237 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 272
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLP 288
L T Y +PE L+ S D++ +G +++ L PF T K + ++
Sbjct: 181 LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSI 240
Query: 289 PQLLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFLN 326
P+ + P AS +L +P+ RP + ELL EF
Sbjct: 241 PKHI--NPVAASLIQKMLQTDPTARPTINELLNDEFFT 276
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVL----PPQ 290
T +Y SPE P + SDI+ LG +L+EL C E +M +L +++ PP
Sbjct: 188 TPYYLSPEICENKPYNNKSDIWALGCVLYEL-CTLKHAFE-AGSMKNLVLKIISGSFPPV 245
Query: 291 LLLKFPKEASFCLWLLHPEPSGRPKMGELLQSEFL 325
L S L P RP + +L+ F+
Sbjct: 246 SLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFI 280
>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution
Length = 543
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4X|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.9a
pdb|3C4Y|A Chain A, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Y|B Chain B, Crystal Structure Of Apo Form Of G Protein Coupled
Receptor Kinase 1 At 7.51a
pdb|3C4Z|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 1.84a
pdb|3C50|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C50|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 2.6a
pdb|3C51|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
pdb|3C51|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Adp And Magnesium Chloride At 3.55a
Length = 543
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
pdb|3C4W|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 1
Bound To Atp And Magnesium Chloride At 2.7a
Length = 543
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 631 SQIASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSI 690
+Q S + + ++VWD+++ VL+ R H +V + S ++ S S+D + LW
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 691 NQAILLLHLGVSI-GTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYDLRNSKIPLCTL 749
+G S G + T + + FG + + D +++ L +
Sbjct: 200 RCPKPASQIGCSAPGYLPTS-----LAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA 254
Query: 750 IGHNKTVSYVKFVDATT--LVSASTDNTLKLWDLSM 783
+ H++ V+ + F + L S S D +L + D S+
Sbjct: 255 V-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 679 GSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSADHRIYYYD 738
SD G+V+LW +++ L+ VS ++ L SG GS D I +D
Sbjct: 99 ASDSGAVELWELDENETLI---VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 739 LRNSKIPLCTLIGHNKTVSYVKFV--DATTLVSASTDNTLKLWD 780
L ++ L + H V+ V + +S S DN + LWD
Sbjct: 156 LAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 623 ICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE-------HERRVWSIDFSSADPTL 675
I W + + IAS + + V VW++ ++ +RE H +RV + + +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 676 LASGSDDGSVKLWSINQAILLLHLGVSI 703
L S D + +W + +L LG +
Sbjct: 147 LLSAGCDNVILVWDVGTGAAVLTLGPDV 174
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 21/134 (15%)
Query: 664 WSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPL---- 719
W F + +P +A + S A L+L LG + K VC P+
Sbjct: 35 WDSGFCAVNPKFMALICEA------SGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA 88
Query: 720 ---DSGRSLAFGSADHRIYYYDLRNSKI------PLCTLIGHNKTVSYVKF--VDATTLV 768
+ +A GS D + +++ + + P+ TL GH K V V + L+
Sbjct: 89 WCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148
Query: 769 SASTDNTLKLWDLS 782
SA DN + +WD+
Sbjct: 149 SAGCDNVILVWDVG 162
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 610 PVVEMASRSK-LSSICWNSYIKSQIASSNFEGVVQVWDVSRSQVLTEMRE--HERRVWSI 666
PV+ + +K + + W+ ++ + S+ + V+ VWDV + + H ++S+
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 667 DFSSADPTLLASGSDDGSVKL 687
D+S D L+ + D V++
Sbjct: 183 DWSR-DGALICTSCRDKRVRV 202
>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|B Chain B, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|C Chain C, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
pdb|3QC9|D Chain D, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C
DOUBLE MUTANT Complexed With Adp And Mg
Length = 543
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEEKTRTMSSLRHRVLPPQL 291
T + +PE L G + D + LGV L+E+ PF EK L+ RVL +
Sbjct: 352 TPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVEN-KELKQRVLEQAV 410
Query: 292 LL--KF-PKEASFCLWLLHPEPSGR 313
KF P FC LL +P R
Sbjct: 411 TYPDKFSPASKDFCEALLQKDPEKR 435
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFE---LFCPFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+E L PF+ +K
Sbjct: 165 ILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQLLLKFPK 297
Y +PE L G+ A+D++ LG+ + E+ C LR LPP+
Sbjct: 222 YMAPELLQGS-YGTAADVFSLGLTILEVACNMEL-PHGGEGWQQLRQGYLPPEFTAGLSS 279
Query: 298 EA-SFCLWLLHPEPSGRPKMGELLQSEFLNEP 328
E S + +L P+P R LL L +P
Sbjct: 280 ELRSVLVMMLEPDPKLRATAEALLALPVLRQP 311
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFE---LFCPFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+E L PF+ +K
Sbjct: 165 ILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 228 KQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC--PFSTGEEKTRTMSSLRHR 285
K+ L+ T ++ +PE ++ P DI+ LG+++ E+ P E + M +R
Sbjct: 197 KRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRIRDS 256
Query: 286 VLPPQL--LLKFPKEA-SFCLWLLHPEPSGRPKMGELLQSEFLN 326
LPP++ L K F +L EPS R ELL FL
Sbjct: 257 -LPPRVKDLHKVSSVLRGFLDLMLVREPSQRATAQELLGHPFLK 299
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 171 LQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKI-LDNRVNVEQVEEKKQPFPMKQ 229
L+++T T L E C + S G H VL ++ + LD + NV K F + +
Sbjct: 114 LRVMTQLTLALKE--CHRRSD--GGHTVLHRDLKPANVFLDGKQNV-----KLGDFGLAR 164
Query: 230 IL---------LMETNWYASPEELAGAPVSCASDIYRLGVLLFE---LFCPFSTGEEK 275
IL + T +Y SPE++ + SDI+ LG LL+E L PF+ +K
Sbjct: 165 ILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK 222
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 651 QVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLW 688
++L+E +H VWS+ ++ T+L+S DDG V+LW
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLW 331
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 22/151 (14%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 155 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 207
Query: 258 LGVLLFELFC---PFSTGEEKTRTMSSLRHRV--LPPQL-----LLKFPKEASFCLWLLH 307
+G+ L E+ P +G L + V PP+L L+F + CL
Sbjct: 208 MGLSLVEMAVGRYPIGSGSGSMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLI--- 264
Query: 308 PEPSGRPKMGELLQSEFLNEPRDSMEEREAA 338
P+ R + +L+ F+ R EE + A
Sbjct: 265 KNPAERADLKQLMVHAFIK--RSDAEEVDFA 293
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRT 278
T Y +PE LA P S A D + +GV+ + L C + E+T +
Sbjct: 170 TPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETES 213
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFST-GEEKTRTMSSLR------------H 284
Y PE ++ SD+Y GV+LFE+ C S + R M +L
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 285 RVLPPQL--------LLKFPKEASFCLWLLHPEPSGRPKMGELL 320
+++ P L L KF A CL L RP MG++L
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLAL---SSEDRPSMGDVL 307
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 94 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 146
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 147 DFGVAGQLTDTQ-----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 197
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 198 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 257
Query: 324 FL 325
F+
Sbjct: 258 FI 259
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 109 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 161
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 162 DFGVAGQLTDTQ-----IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 212
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 213 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272
Query: 324 FL 325
F+
Sbjct: 273 FI 274
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 94 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 146
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 147 DFGVAGQLTDTQ-----IKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 197
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 198 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 257
Query: 324 FL 325
F+
Sbjct: 258 FI 259
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 24/104 (23%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFCPFST-GEEKTRTMSSLR------------H 284
Y PE ++ SD+Y GV+LFE+ C S + R M +L
Sbjct: 207 YIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266
Query: 285 RVLPPQL--------LLKFPKEASFCLWLLHPEPSGRPKMGELL 320
+++ P L L KF A CL L RP MG++L
Sbjct: 267 QIVDPNLADKIRPESLRKFGDTAVKCLAL---SSEDRPSMGDVL 307
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 150 DLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEGMQEHKIL 209
DL P PLD Q T LR +++ SE + A VL+ E K+
Sbjct: 114 DLLEPGPLDETQIATILR----EILKGLDYLHSEKKIHRDIKAAN---VLLSEHGEVKLA 166
Query: 210 DNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
D V + + + +K+ + T ++ +PE + + +DI+ LG+ EL
Sbjct: 167 DFGVAGQLTDTQ-----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL---- 217
Query: 270 STGEEKTRTMSSLRHRVL-----PPQLLLKFPKE-ASFCLWLLHPEPSGRPKMGELLQSE 323
+ GE + ++ L PP L + K F L+ EPS RP ELL+ +
Sbjct: 218 ARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 277
Query: 324 FL 325
F+
Sbjct: 278 FI 279
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 725 LAFGSADHRIYYYDLRNSK------IPLCTLIGHNKTVSYVKFVDATTL-VSASTDNTLK 777
L GS D + + L + IP L GHN VS + +S+S D TL+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 778 LWDLSMCTSRVIDTPLHSFTGH 799
LWDL T+ F GH
Sbjct: 102 LWDLRTGTT------YKRFVGH 117
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 672 DPTLLASGSDDGSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGSA- 730
D +L SGS D +V +W + + + G+ + T N L A S+
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAISSSW 96
Query: 731 DHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFV-DATTLVSASTDNTLKLWDL 781
D + +DLR + +GH V V F D ++SA + +KLW++
Sbjct: 97 DKTLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++E F + T Y SPE L G S SDI+
Sbjct: 139 ILVNSRGEIKLCDFGVSGQLIDEMANEF-------VGTRSYMSPERLQGTHYSVQSDIWS 191
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 192 MGLSLVEM 199
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 186 IVGTTAYXAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 233
Query: 292 LL 293
LL
Sbjct: 234 LL 235
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 195 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 242
Query: 292 LL 293
LL
Sbjct: 243 LL 244
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 195 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 242
Query: 292 LL 293
LL
Sbjct: 243 LL 244
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 29/107 (27%)
Query: 30 VELTHGDHLRNQGGL-----SGVCE--------------NEAAIDPFVHAIEWGDVSLRQ 70
+EL HG HL ++ + +G C NE AI+ +H R+
Sbjct: 107 MELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHG-------FRE 159
Query: 71 WLDKPKRSVDVYECLHIFRQIVEIVYAAHSQGIVVHNVRPSCFVMSS 117
LD +R + +I RQI ++ H+QGI +++P F+ S+
Sbjct: 160 SLDFVQREKLIS---NIMRQIFSALHYLHNQGICHRDIKPENFLFST 203
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFCPFSTGEEKTRTMSSLRHRVLPPQL 291
++ T Y +PE L G ++ SDIY GV+L E+ +E HR PQL
Sbjct: 189 IVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDE---------HR--EPQL 236
Query: 292 LL 293
LL
Sbjct: 237 LL 238
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLWSINQAILLLHLGVSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLR-NS 742
V +W +++ + + A+V VQ+ P + G L S+D ++ + + N
Sbjct: 79 VLIWKEENG---RWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134
Query: 743 KIPLCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLWDL-SMCTSR 787
+ H V+ + AT V+ DN +K+W S +
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 788 VIDTPLHSFTGHTN 801
V+++ L GH++
Sbjct: 195 VLESTLE---GHSD 205
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 70 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 126
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 127 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 186
Query: 696 LLHLG 700
+ G
Sbjct: 187 VAIFG 191
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 73/177 (41%), Gaps = 35/177 (19%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLWSINQ------AILLLHLGVSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYY 737
V +W A+ +H A+V VQ+ P + G L S+D ++
Sbjct: 79 VMIWKEENGRWSQIAVHAVH----------SASVNSVQWAPHEYGPMLLVASSDGKVSVV 128
Query: 738 DLR-NSKIPLCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLW 779
+ + N + H V+ + AT V+ DN +K+W
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 41/177 (23%)
Query: 651 QVLTEMREHERRVWSIDFSSADP---TLLASGSDDGSVKLWSINQ------AILLLHLGV 701
+++ + HE VW +D+ A P T+LAS S DG V +W A+ +H
Sbjct: 44 KLIDTLTGHEGPVWRVDW--AHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVH--- 98
Query: 702 SIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYYDLR-NSKIPLCTLIGHNKTVSYV 759
A+V VQ+ P + G L S+D ++ + + N + H V+
Sbjct: 99 -------SASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151
Query: 760 KFVDATT--------------LVSASTDNTLKLWDL-SMCTSRVIDTPLHSFTGHTN 801
+ AT V+ DN +K+W S + V+++ L GH++
Sbjct: 152 SWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE---GHSD 205
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80
Query: 685 VKLWSINQ------AILLLHLGVSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYY 737
V +W A+ +H A+V VQ+ P + G L S+D ++
Sbjct: 81 VLIWKEENGRWSQIAVHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVV 130
Query: 738 DLR-NSKIPLCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLWDL- 781
+ + N + H V+ + AT V+ DN +K+W
Sbjct: 131 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 190
Query: 782 SMCTSRVIDTPLHSFTGHTN 801
S + V+++ L GH++
Sbjct: 191 SDAQTYVLESTLE---GHSD 207
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPFS--TGEEKTRTMSSLRHRVLPPQL 291
+++PE S SD++ G+L++E+F P+ T E +S HR+ P L
Sbjct: 171 WSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQ-GHRLYRPHL 229
Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQS 322
+ + W H P RP +LL S
Sbjct: 230 ASDTIYQIMYSCW--HELPEKRPTFQQLLSS 258
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 26/203 (12%)
Query: 639 EGVVQVWDVSR-------SQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSIN 691
+G V+VWD+S SQ+ R++ R + D L G + ++ +W +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL---LPDGCTLIVGGEASTLSIWDLA 127
Query: 692 QAILLLHLGVSIGTIKTKANVCCVQFPLDSGRSLAFGS-ADHRIYYYDLRNSKIPLCTLI 750
+ + T + C + + F +D I +DL N + +
Sbjct: 128 APTPRIKAEL------TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQ 180
Query: 751 GHNKTVSYVKFV-DATTLVSASTDNTLKLWDLSMCTSRVIDTPLHSFTGHTNVKNFVGLS 809
GH S + D T L + DNT++ WDL R + H FT +
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR--EGRQLQQ--HDFTSQIFSLGYCPTG 236
Query: 810 VWDGYVATGSETNEVFVYHKAFP 832
W +A G E++ V V H P
Sbjct: 237 EW---LAVGMESSNVEVLHVNKP 256
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 185 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 219
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELF----CPFSTGEEKTRTMSSLRH--RVLPPQL 291
+ +PE + S SD++ GVLL+E+F P+ + S LR R+ P+
Sbjct: 267 WMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPE- 325
Query: 292 LLKFPKEASFCLWLLHPEPSGRPKMGELLQ 321
P+ L H +P RP+ EL++
Sbjct: 326 -YSTPEIYQIMLDCWHRDPKERPRFAELVE 354
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 580 GELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQIASSNFE 639
G L A +K + V+E ++E + V + + + W+ + +AS++++
Sbjct: 117 GNLLATCSRDKSVWVWE----VDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASYD 171
Query: 640 GVVQVWDVSRSQ--VLTEMREHERRVWSIDFSSADPT--LLASGSDDGSVKLW 688
V+++ + HE VWS+ F DP+ LAS SDD +V++W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAF---DPSGQRLASCSDDRTVRIW 221
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 33 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 696 LLHLG 700
+ G
Sbjct: 150 VAIFG 154
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 33 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 89
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 696 LLHLG 700
+ G
Sbjct: 150 VAIFG 154
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 633 IASSNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQ 692
+A + G++++ + Q + H + + F DP LL S S D +++LW+I
Sbjct: 88 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Query: 693 AILLLHLG 700
L+ G
Sbjct: 148 DTLVAIFG 155
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 579 DGELFAAAGVNKKIKVFECDAIINENRDIHYPVVEMASRSKLSSICWNSYIKSQ---IAS 635
D +FA G N+ + ++EC + E R + V+ + + W + +A
Sbjct: 29 DPLVFATVGSNR-VTLYECHSQ-GEIRLLQ-SYVDADADENFYTCAWTYDSNTSHPLLAV 85
Query: 636 SNFEGVVQVWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAIL 695
+ G++++ + Q + H + + F DP LL S S D +++LW+I L
Sbjct: 86 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 145
Query: 696 LLHLG 700
+ G
Sbjct: 146 VAIFG 150
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFCPF 269
T Y +PE LA P S A D + +GV+ + L C +
Sbjct: 181 TPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGY 215
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 177 PTNDLSEASCMQSSSAYGTHVVLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLME-- 234
P+N L A C + +G L + + N + + + E + F Q +L +
Sbjct: 137 PSNILLNAECHVKVADFG----LSRSFVNIRRVTNNIPL-SINENTENFDDDQPILTDYV 191
Query: 235 -TNWYASPEELAGA-PVSCASDIYRLGVLLFELFC 267
T WY +PE L G+ + D++ LG +L E+ C
Sbjct: 192 ATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILC 226
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PF-STGEEKTRTMSSLRHRVLPPQLLL 293
+ +PE G+ S D++ G++L+E+ PF G R M ++ + PP L+
Sbjct: 169 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP-LIK 227
Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
PK S +PS RP M E+++
Sbjct: 228 NLPKPIESLMTRCWSKDPSQRPSMEEIVK 256
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 238 YASPEELAGAPVSCASDIYRLGVLLFELFC---PF-STGEEKTRTMSSLRHRVLPPQLLL 293
+ +PE G+ S D++ G++L+E+ PF G R M ++ + PP L+
Sbjct: 170 WMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP-LIK 228
Query: 294 KFPKEA-SFCLWLLHPEPSGRPKMGELLQ 321
PK S +PS RP M E+++
Sbjct: 229 NLPKPIESLMTRCWSKDPSQRPSMEEIVK 257
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 628 YIKSQIASSNFEGVVQVWDVS--RSQVLTEMREHERRVWSIDFSSAD-PTLLASGSDDGS 684
Y ++A+ + + +++++V +++ + HE VW +D++ T+LAS S DG
Sbjct: 19 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78
Query: 685 VKLWSINQ------AILLLHLGVSIGTIKTKANVCCVQF-PLDSGRSLAFGSADHRIYYY 737
V +W A+ +H A+V VQ+ P + G L S+D ++
Sbjct: 79 VLIWKEENGRWSQIAVHAVH----------SASVNSVQWAPHEYGPLLLVASSDGKVSVV 128
Query: 738 DLR-NSKIPLCTLIGHNKTVSYVKFVDATT--------------LVSASTDNTLKLWDL- 781
+ + N + H V+ + AT V+ DN +K+W
Sbjct: 129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188
Query: 782 SMCTSRVIDTPLHSFTGHTN 801
S + V+++ L GH++
Sbjct: 189 SDAQTYVLESTLE---GHSD 205
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 683 GSVKLWSINQAILLLHLGVSIGTIKTKANVCCVQFPLDS--GRSLAFGSADHRIYYYDLR 740
G ++L+ I L L + I+ + C F S R LA G ++ ++L
Sbjct: 44 GVIQLYEIQHGDLKL-----LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98
Query: 741 NSKIPLCTLIGHNKTVS-------YVKFVDATTLVSASTDNTLKLWD 780
++P+ ++ GH + ++ A +V+ S D T+K+WD
Sbjct: 99 APEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD 145
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 720 DSGRSLAFGSADHRIYYYDLR-NSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKL 778
D G + S D +DL N I + KT+ ++K + + +++ S D TLK
Sbjct: 96 DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 779 WD 780
WD
Sbjct: 156 WD 157
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSM 783
+A GS D I+ Y ++ + L H V+ + + +TLVS+ D +K W++ +
Sbjct: 556 VATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 183 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 211
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 196 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 224
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 136 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 188
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 189 MGLSLVEM 196
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 725 LAFGSADHRIYYYDLRNSKIPLCTLIGHNKTVSYVKFVDATTLVSASTDNTLKLWDLSM 783
+A GS D I+ Y ++ + L H V+ + + +TLVS+ D +K W++ +
Sbjct: 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNVVL 614
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 184 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 212
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 84 CLHIFRQIVEIVYAAHSQGIVVHNV-RPSCFVMSSFNHVSFIEXXXXXXXXXXXHEEGLN 142
L R+I + + H I + N+ RP F +FN V I+ + L+
Sbjct: 53 ALRTLREIKILKHFKHENIITIFNIQRPDSF--ENFNEVYIIQELMQTDLHRVISTQMLS 110
Query: 143 TQNMETKDLSSPLPLDMLQRRTRLRREDLQLVTAPTNDLSEASCMQSSSAYGTHVVLVEG 202
+++ + + +L + R DL+ P+N L ++C +G ++ E
Sbjct: 111 DDHIQYFIYQTLRAVKVLHGSNVIHR-DLK----PSNLLINSNCDLKVCDFGLARIIDES 165
Query: 203 MQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPE-ELAGAPVSCASDIYRLGVL 261
+ N E ++ + + T WY +PE L A S A D++ G +
Sbjct: 166 AAD--------NSEPTGQQS-----GMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212
Query: 262 LFELF 266
L ELF
Sbjct: 213 LAELF 217
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 237 WYASPEELAGAPVSCASDIYRLGVLLFELF 266
WYA PE L+ S SD++ GV+L+ELF
Sbjct: 180 WYA-PESLSDNIFSRQSDVWSFGVVLYELF 208
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 198 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 250
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 251 MGLSLVEM 258
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 232 LMETNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFS 270
++ T Y SPE+ G +DIY +G++L+E+ PF+
Sbjct: 172 VLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFN 213
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y SPE L G S SDI+
Sbjct: 163 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMSPERLQGTHYSVQSDIWS 215
Query: 258 LGVLLFEL 265
+G+ L E+
Sbjct: 216 MGLSLVEM 223
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 235 TNWYASPEELAGAPVSCASDIYRLGVLLFELFC---PFSTGEE 274
T Y SPE L S +SD++ LG ++++L PF G E
Sbjct: 197 TAQYVSPELLTEKSASKSSDLWALGCIIYQLVAGLPPFRAGNE 239
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 198 VLVEGMQEHKILDNRVNVEQVEEKKQPFPMKQILLMETNWYASPEELAGAPVSCASDIYR 257
+LV E K+ D V+ + ++ F + T Y +PE L G S SDI+
Sbjct: 146 ILVNSRGEIKLCDFGVSGQLIDSMANSF-------VGTRSYMAPERLQGTHYSVQSDIWS 198
Query: 258 LGVLLFEL 265
+G+ L EL
Sbjct: 199 MGLSLVEL 206
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 644 VWDVSRSQVLTEMREHERRVWSIDFSSADPTLLASGSDDGSVKLWSINQAILLLHLGVSI 703
VW + L + H +WSID +GS D S+KLW ++ G +
Sbjct: 58 VWYSLNGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSN-------GQCV 109
Query: 704 GTIKTKANVCCVQF 717
T K+ V V+F
Sbjct: 110 ATWKSPVPVKRVEF 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,729,928
Number of Sequences: 62578
Number of extensions: 986684
Number of successful extensions: 3598
Number of sequences better than 100.0: 220
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 2833
Number of HSP's gapped (non-prelim): 539
length of query: 886
length of database: 14,973,337
effective HSP length: 107
effective length of query: 779
effective length of database: 8,277,491
effective search space: 6448165489
effective search space used: 6448165489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)