Query 002737
Match_columns 886
No_of_seqs 355 out of 838
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 21:09:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002737.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_104-107//hhsearch_pdb/002737hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 1.0 1 1 214.4 13.7 116 106-221 4-121 (130)
2 4i1k_A B3 domain-containing tr 1.0 1 1 140.8 11.8 98 112-219 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 1.0 1 1 112.1 10.6 96 112-218 7-102 (104)
4 1na6_A Ecorii, restriction end 1.0 1 1 41.5 8.0 93 112-205 17-123 (404)
5 4b8c_D Glucose-repressible alc 1.0 1 1 33.4 3.7 97 459-560 30-126 (727)
6 2ktr_A Sequestosome-1; autopha 1.0 1 1 31.7 4.1 62 750-817 17-94 (117)
7 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 31.6 4.3 63 750-818 2-80 (102)
8 1vd2_A Protein kinase C, IOTA 1.0 1 1 28.6 7.7 54 753-813 6-59 (89)
9 1oey_J P40-PHOX, neutrophil cy 1.0 1 1 26.1 5.2 56 763-844 18-77 (107)
10 3iot_A Maltose-binding protein 1.0 1 1 25.7 0.9 62 500-573 377-438 (449)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=214.42 Aligned_cols=116 Identities=29% Similarity=0.494 Sum_probs=106.5
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCC
Q ss_conf 99999974048996143569988932450110633099999999999629999856999179899992899711661462
Q 002737 106 GAPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGW 185 (886)
Q Consensus 106 ~~~~~~~~~~F~K~LT~SDV~~~GrlsVPkr~AE~~FP~Ld~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGW 185 (886)
+...+...++|+|+||+|||++++||+||+++|++|||+++..+..++++|.++|.+|++|+|||+||+++++|+||+||
T Consensus 4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW 83 (130)
T 1wid_A 4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGW 83 (130)
T ss_dssp ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSH
T ss_pred CCCCCCCCCEEEEEEEHHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCH
T ss_conf 77899986249999855771897779967899996688654445788389999958999999999997899963883774
Q ss_pred CHHHCCCCCCCCCEEEEEECC--CCEEEEEEEECCCCC
Q ss_conf 002102578679879999814--980999998358999
Q 002737 186 SVFVSAKRLVAGDSVLFIWNE--KNQLLLGIRRATRPQ 221 (886)
Q Consensus 186 s~FV~~KkL~aGDsVvF~R~e--~G~L~VGIRRa~r~~ 221 (886)
+.||++|+|++||.|+|++.+ +++|+|++||+.++.
T Consensus 84 ~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 84 SRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCC
T ss_conf 88778719988989999995389968999999899998
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=140.79 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=86.3
Q ss_pred CCEEEEEEECCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCCHHHCC
Q ss_conf 74048996143569988932450110633099999999999629999856999179899992899711661462002102
Q 002737 112 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 191 (886)
Q Consensus 112 ~~~~F~K~LT~SDV~~~GrlsVPkr~AE~~FP~Ld~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FV~~ 191 (886)
..++|.|+||+||+.++.+|.||+++++.+||..+ ..+.+.|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECCHHCCCCCEEEECHHHHHHHCCCCC-------EEEEEEEC-CCEEEEEEEEECC--CEEECCCHHHHHHH
T ss_conf 99989999785661898679909999997488888-------37999979-9478989999589--07877763898887
Q ss_pred CCCCCCCEEEEEECCCC--EEEEEEEECCC
Q ss_conf 57867987999981498--09999983589
Q 002737 192 KRLVAGDSVLFIWNEKN--QLLLGIRRATR 219 (886)
Q Consensus 192 KkL~aGDsVvF~R~e~G--~L~VGIRRa~r 219 (886)
++|++||.|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred CCCCCCCEEEEEEECCCCEEEEEEEEECCC
T ss_conf 599989899999936986599999994457
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=1.00 E-value=1 Score=112.09 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=82.6
Q ss_pred CCEEEEEEECCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEECCCCCHHHCC
Q ss_conf 74048996143569988932450110633099999999999629999856999179899992899711661462002102
Q 002737 112 PTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQTPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSA 191 (886)
Q Consensus 112 ~~~~F~K~LT~SDV~~~GrlsVPkr~AE~~FP~Ld~~~~~p~q~L~v~Dl~G~~W~FR~iyrg~pkrhlLTtGWs~FV~~ 191 (886)
..+.|.|+|+++|. ..++.||+++++.+.+.+ ...+.++|..|++|++++.+++ ++..|+.||..||++
T Consensus 7 ~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCC--CCEEECCHHHHHHCCCCC-------CCEEEEECCCCCEEEEEEEEEC--CCEEECCCHHHHHHH
T ss_conf 89878999877775--531888999998648669-------9889999799999999999989--949986294999997
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEEECC
Q ss_conf 578679879999814980999998358
Q 002737 192 KRLVAGDSVLFIWNEKNQLLLGIRRAT 218 (886)
Q Consensus 192 KkL~aGDsVvF~R~e~G~L~VGIRRa~ 218 (886)
++|++||.++|...++..+.|.|-|.+
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~s 102 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGHN 102 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECSS
T ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC
T ss_conf 599989899999858976999997898
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=1.00 E-value=1 Score=41.53 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=67.9
Q ss_pred CCEEEEEEECCCCCCCC----CCEEEECCHHHHHCCCCC-CCCCCCCEEEEEE--ECCCCEEEEEEEEEC------CCCC
Q ss_conf 74048996143569988----932450110633099999-9999996299998--569991798999928------9971
Q 002737 112 PTNYFCKTLTASDTSTH----GGFSVPRRAAEKVFPPLD-YSQTPPAQELIAR--DLHDNEWKFRHIFRG------QPKR 178 (886)
Q Consensus 112 ~~~~F~K~LT~SDV~~~----GrlsVPkr~AE~~FP~Ld-~~~~~p~q~L~v~--Dl~G~~W~FR~iyrg------~pkr 178 (886)
....|+|.|++-|++.. .+|.+|+..+...||.|+ .....+...+.+. |...-++.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred CCHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCC
T ss_conf 60413577224457887776444578568999863548986556776315778416888427789998326466898874
Q ss_pred EEECCCCC-HHHCCCCCCCCCEEEEEEC
Q ss_conf 16614620-0210257867987999981
Q 002737 179 HLLTTGWS-VFVSAKRLVAGDSVLFIWN 205 (886)
Q Consensus 179 hlLTtGWs-~FV~~KkL~aGDsVvF~R~ 205 (886)
|.||. |. .+.-.....+||.++|.+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEE-CCCCCCCCCCCCCCCEEEEEEE
T ss_conf 58840-2789865466888788999872
No 5
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=33.41 Aligned_cols=97 Identities=15% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 74323688898503566666878898643437768999999999988412035888989999985431004446666852
Q 002737 459 SQNVSNGTASMIPRQMLQQSQAQNALLQSFQENQASAQAQLLQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNV 538 (886)
Q Consensus 459 p~~~~~~~~~~~~~q~~qq~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 538 (886)
|.+....-.+.+-....++.+.|....+..++.+.+.+.+-.+++.++++ +++||||+|++++++.+..++....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----q~q~~~qqq~~~q~~~~~~~~~~~~ 104 (727)
T 4b8c_D 30 PLLHPHLDDPSLLNNPIWKLQLHLAAVSAQSLGQPNIYARQNAMKKYLAT-----QQAQQAQQQAQQQAQQQVPGPFGPG 104 (727)
T ss_dssp TTTSGGGTSCCCTTSHHHHHHHHHHHHHHHSTTSTTHHHHHHHHHHHC--------------------------------
T ss_pred CCCCCCCCCCHHCCCCHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 55567778802104822777778876331212660499999999988750-----1306678887760667666765668
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4555444577899999766765
Q 002737 539 ISTLPHLASSSQSQPPTLQTVA 560 (886)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~ 560 (886)
.....+..+..+.+.+..+..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~s 126 (727)
T 4b8c_D 105 PQAAPPALQPTDFQQSHIAEAS 126 (727)
T ss_dssp ----------------------
T ss_pred CCCCCCCHHHHHHCCCCCCCHH
T ss_conf 6667520002321265665333
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=31.68 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCCCCEEEEEECC-----CCEEEECCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9975617994036-----411443169-----------999979999999998446787789999850999980689657
Q 002737 750 PPTRTFVKVHKSG-----SFGRSLDIS-----------KFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 813 (886)
Q Consensus 750 ~~~~~fVKV~m~G-----~igRkIDL~-----------~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~m 813 (886)
+...+-||+|..| .--|..-|. .-.+|++|+..+.++|.. + .+..|++.|.|.|||..
T Consensus 17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~---L---~~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA---L---RPGGFQAHYRAERGDLV 90 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S---CSSCEEEEEECTTCCEE
T ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C---CCCCEEEEEECCCCCEE
T ss_conf 44528999998067778872799884267774311245677799999999997345---5---89838999998999989
Q ss_pred ECCC
Q ss_conf 6278
Q 002737 814 LLGD 817 (886)
Q Consensus 814 LvGD 817 (886)
-...
T Consensus 91 tISs 94 (117)
T 2ktr_A 91 AFSS 94 (117)
T ss_dssp EECS
T ss_pred EECC
T ss_conf 7638
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=31.63 Aligned_cols=63 Identities=22% Similarity=0.276 Sum_probs=43.7
Q ss_pred CCCCCEEEEEECC-----CCEEEECCCC-----------CCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 9975617994036-----4114431699-----------99979999999998446787789999850999980689657
Q 002737 750 PPTRTFVKVHKSG-----SFGRSLDISK-----------FSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 813 (886)
Q Consensus 750 ~~~~~fVKV~m~G-----~igRkIDL~~-----------~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~m 813 (886)
|..++-||+|..| .--|..-|.. -.+|++|+..+.++|.. + .+..|++.|.|.|||..
T Consensus 2 ~~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l---~~~~f~l~Y~DedGDlI 75 (102)
T 2kkc_A 2 PHMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---L---RPGGFQAHYRAERGDLV 75 (102)
T ss_dssp -CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---S---CSSCEEEEEECTTCCEE
T ss_pred CCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---C---CCCCEEEEEECCCCCEE
T ss_conf 97469999998167777872699883367775422244666699999999997544---5---79838999998999989
Q ss_pred ECCCC
Q ss_conf 62786
Q 002737 814 LLGDD 818 (886)
Q Consensus 814 LvGDv 818 (886)
-..++
T Consensus 76 tiSsD 80 (102)
T 2kkc_A 76 AFSSD 80 (102)
T ss_dssp EECSH
T ss_pred EECCH
T ss_conf 76488
No 8
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=28.64 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEE
Q ss_conf 5617994036411443169999979999999998446787789999850999980689657
Q 002737 753 RTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVL 813 (886)
Q Consensus 753 ~~fVKV~m~G~igRkIDL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~m 813 (886)
..=||++-.|. .|.+.+..--+|++|...+..+|.+.. ...+++.|.|-|||+.
T Consensus 6 ~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~------~~~f~lky~DEeGD~i 59 (89)
T 1vd2_A 6 QVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDN------EQLFTMKWIDEEGDPC 59 (89)
T ss_dssp CEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCS------SCCEEEEECCSSSCCE
T ss_pred EEEEEEEECCE-EEEEECCCCCCHHHHHHHHHHHHCCCC------CCEEEEEEECCCCCCC
T ss_conf 18999994785-999987999899999999999968898------9827999998997950
No 9
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=26.11 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=46.2
Q ss_pred CCEEEE----CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCHHHHHCCEEEEEEECHHHH
Q ss_conf 411443----1699999799999999984467877899998509999806896576278644544103017798092766
Q 002737 763 SFGRSL----DISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVGYIKILSPLEV 838 (886)
Q Consensus 763 ~igRkI----DL~~~~sY~eL~~~L~~MF~~eg~l~d~~~s~~~lvYeD~EGD~mLvGDvPWe~Fv~svkri~Il~~~e~ 838 (886)
.-.|.| ||+.--.|.+|..-..+-|.. .+-.|-|.|.|||+ ||||+.+++
T Consensus 18 ~~irdI~veedl~~~P~ykdLl~lmr~~F~~---------~DIaLNYrD~eGDL-----------------IrilddeDv 71 (107)
T 1oey_J 18 STIKDIAVEEDLSSTPLLKDLLELTRREFQR---------EDIALNYRDAEGDL-----------------VRLLSDEDV 71 (107)
T ss_dssp EEEEEEEECSCTTCCCCHHHHHHHHHHHHCC---------SSEEEEEECTTSCE-----------------EECCSHHHH
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHCC---------CCEEEEEECCCCCE-----------------EEECCHHHH
T ss_conf 3420388715646697789999999987341---------00466303688998-----------------998165778
Q ss_pred HHCCCC
Q ss_conf 300247
Q 002737 839 QQMGKG 844 (886)
Q Consensus 839 ~~m~~~ 844 (886)
.-|-++
T Consensus 72 ~lmi~~ 77 (107)
T 1oey_J 72 ALMVRQ 77 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 10
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=25.72 Aligned_cols=62 Identities=26% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998841203588898999998543100444666685245554445778999997667653223565678999
Q 002737 500 LQQQLQRQHSYNEQRQQQQQVQQSQQLHQLSVQPQISNVISTLPHLASSSQSQPPTLQTVASQCQQSNFSDSLG 573 (886)
Q Consensus 500 ~~q~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (886)
+.++.++++++.+|+|+++||+|+++++......+.+ .+...++-+...+..+++.+.-+++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (449)
T 3iot_A 377 LMKAFESLKSFQQQQQQQQQQQQQQQQQPPPPPPPPP------------PPQLPQPPPQAQPLLPQQSYQITAG 438 (449)
T ss_dssp HHHHHHHHHHTC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9999999986464323656788899998798978887------------6999999798999999887555778
Done!