Citrus Sinensis ID: 002739

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880------

MSSSSKICFNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG

cccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHcccccccccccccEEEEcccccccccccEEEEHHHHHHHcccccccccccEEEEcccccEEEEEEEEEccccccEEEEcccHHHHHccccccccEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc

cccccEEEEccccccccccccccccccccccHHHHHHHcccHHHcccHHHHHccccccccccccccccEcEEEEEEHHHEEEEcccccEEHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHEEccHccccccccEEEcHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEEcccEEEEEcccccccEEEEcccccHcccccccEEcccccccccccccccccccccHHHccHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHcccccccccccccccccccccccccccccccHHcccccccccccEEcccccccHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccc

msssskicfNKECKelkserprkgwllrggEFAELCDRcgsiyeegrfcdtfhvnasgwrccescgkrvhcgcitsvhaftlldaggiecmtcarknvlvaptpswppslfyqtpfperikdlsvknwtqlagsgpvpwrqapslfnssipqpelrprlpyevdlsagidrinaserlsvpslekrKLEDFSERLMngglksgsrdipenanagsncdmqpssclnkpqqsstlkddsstphfglavsyaspsetnsqigvsgshlrpvvqpplvkqfhgnlpngadslgetqvrngrprvdargrsqllprywprftdqdlqqisgdsnsvITPLFEKMLsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvgekiqwvqcedcskwrkvpanarlpskwtcsgnlwdpersVCSVAQELREEQLEdliapnnpasskklkaakqepDCVEALEGLDTLANLAIlgegegltassqattkhprhrpgcscivciqppsgkgpkhkqtctcnvcltvKRRFHTLMLRREKKQSEKDAETSRKKQqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQrlsssgvntssvdneglqggvtgekisngitldgshqdtdedhhgslsvkasaSISATG

msssskicfnkeckelkserprkgwllrggeFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFnssipqpelrPRLPYEVDLSAGIdrinaserlsvpslekrkledFSERLmngglksgsrdiPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPngadslgetqvrngrprvdargrsqllprywPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAyfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWrkvpanarlpskwtcsgnlwdpeRSVCSVAQELREEQLedliapnnpasskklKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPpsgkgpkhkqtctcnvcltvkRRFHTLMLrrekkqsekdaetsrkkqqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQRlsssgvntssvdneglqggvTGEKISNGITLDGSHQdtdedhhgslsvkasasisatg

MSSSSKICFNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG

**********************KGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWR************************************************************************************************************************************************************************LLPRYWPRFTDQDLQQI****NSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSV********************************CVEALEGLDTLANLAILGE*******************GCSCIVCIQ*********KQTCTCNVCLTVKRRFHTLML************************************************************************************************************************************************************************

****SKI*FNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCA************************************************************************************************************************************************************************************************************************************************PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMG**************************GHAELADPSSWSKVDKSGYIA******************************EDVIELKLTWEEAQGLL*********VV****Y***************IFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWD***********************************************************************************************************************************************************************************************************************QDATE*****************************************************************

MSSSSKICFNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCD*********************TPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPA***********PDCVEALEGLDTLANLAILGEGEGL**************PGCSCIVCIQPP*********TCTCNVCLTVKRRFHTLMLR*******************************************************************FKGQIDLNIQPE***********GSMIRLLQDATEKYLRQ*************DNEGLQGGVTGEKISNGITLDGS************************

****SKICFNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANA**************************************************************************************************RYWPRFTDQ********SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS****************************************************************SKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLK************EGLDTLANLAILGE*****************RPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK******************************************************************QI***IQPERE****PGSDSGSMIRLLQDATEKYLRQQRL*********************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSSSSKICFNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRxxxxxxxxxxxxxxxxxxxxxLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		886	2.2.26 [Sep-21-2011]
Q0D5G4		955	B3 domain-containing prot	yes	no	0.892	0.828	0.508	0.0
Q8W4L5		790	B3 domain-containing tran	yes	no	0.795	0.892	0.423	1e-152
Q5CCK4		780	B3 domain-containing tran	no	no	0.591	0.671	0.464	1e-140
Q6Z3U3		949	B3 domain-containing prot	no	no	0.582	0.543	0.479	1e-135
O65420		713	B3 domain-containing tran	no	no	0.586	0.729	0.449	1e-122
Q7XKC4		438	Putative B3 domain-contai	no	no	0.120	0.244	0.444	2e-18
Q9LW31		313	B3 domain-containing tran	no	no	0.126	0.357	0.407	5e-18
Q7XKC5		433	B3 domain-containing prot	no	no	0.115	0.235	0.456	6e-18
Q6Z1Z3		362	B3 domain-containing prot	no	no	0.115	0.281	0.407	1e-15
A4LBC0		402	B3 domain-containing prot	no	no	0.121	0.268	0.381	2e-15

>sp\|Q0D5G4\|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2	Back alignment and function desciption

 Score =  798 bits (2060), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/889 (50%), Positives = 568/889 (63%), Gaps = 98/889 (11%)

Query: 6   KICFNKECKELKSERPRK-GWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCES 64
           +ICFN  CK+ KS+ PR+ GW LR G+FAELCDRC   +E G FC+TFH+  +GWR CES
Sbjct: 81  RICFNAHCKDPKSDGPRRRGWRLRNGDFAELCDRCYHSFEHGGFCETFHLEVAGWRNCES 140

Query: 65  CGKRVHCGCITSVHAFTLLDAGGIECMTCARK-NVLVAPTPSWPPSLFYQTPFPERIKDL 123
           CGKR+HCGCI SVHAF  LDAGG+EC+ CARK +  +AP+  W  S+       +R KD 
Sbjct: 141 CGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMAPSQIWSSSMHMAQNVADR-KDN 199

Query: 124 SVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSL 183
            VK+W   AG     WRQ  ++++ S  Q +L+ RL +E D  +G +++    R  + + 
Sbjct: 200 FVKSWRPPAGQFSSQWRQN-NMWSMSTMQSDLQQRLAFEFDRPSGSEKLLPG-RTFIHAH 257

Query: 184 EKRKLEDFS--------------ERLMNGGLKSGSRDIPENA------------------ 211
           EK K +D                ER  NG  +  + D P  A                  
Sbjct: 258 EK-KFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLD-PTYAYTLYHREGTNPNLHDHSH 315

Query: 212 NAGSN-------------CDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQ 258
           +AG N             C    ++        S LKDD S    GL+ +++S +     
Sbjct: 316 HAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDDPSAVPAGLSSNFSSANGPKDH 375

Query: 259 IGVSGSHLRP-VVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRF 317
           I +  +  +  +    L KQF+ +  +  D+  + Q+RNGRPR+DA+ RSQLLPRYWPR 
Sbjct: 376 IRIGPTQQQQQMASSSLQKQFYSH--SVIDNDFQAQLRNGRPRMDAKARSQLLPRYWPRI 433

Query: 318 TDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQ 377
           TDQ+LQ +SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP ISQ EGLPLKVQ
Sbjct: 434 TDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPAISQAEGLPLKVQ 493

Query: 378 DSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 437
           D+ GKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR++PEGKLVMGFRKA
Sbjct: 494 DATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRIDPEGKLVMGFRKA 553

Query: 438 SSASASDQDNEANKAGTGIP---ANGHAELADPS------------------------SW 470
           ++ SA +QD     A   +P   AN    + D S                        + 
Sbjct: 554 TNLSA-EQDQPTKPANGVLPPPEANNKVVVPDSSPNAAVPRPIKVNTESKSSSPVEQATA 612

Query: 471 SKVDKSGYIATEALGAKSS--ISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLR 528
            K+DK      E  G  SS  +  KRK T++G K KR  +++E+ +ELK+TWEEAQ LLR
Sbjct: 613 CKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFHMDSEESMELKITWEEAQELLR 672

Query: 529 PPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANAR 588
           PPP   PS+VV++G+EFEEYE+ PILG+ T F TD  GE  QW QCEDCSKWRK+P +A 
Sbjct: 673 PPP-KAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGENHQWAQCEDCSKWRKLPVDAL 731

Query: 589 LPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEG 648
           LPSKWTCS N WD ERS C  AQE+  E+L ++I P  P ++KK K  K + D ++  +G
Sbjct: 732 LPSKWTCSDNKWDSERSSCDSAQEINMEELGEMI-PIKPGAAKKTK-GKVDTDNIDVSDG 789

Query: 649 LDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLT 708
           LDTLANLAILGEGE L   SQ TT+HPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVC+T
Sbjct: 790 LDTLANLAILGEGESL--PSQPTTRHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCMT 847

Query: 709 VKRRFHTLMLRREKK-QSEKDAETSRKKQQ-QQKLPVPEKSADDDPLSCSKTGNNSPNEK 766
           V+RRF TLM+RREK+ QSEKD+   RK++  Q   PVP+  +   P S S     SP+++
Sbjct: 848 VRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQSGSGAHPTSTS-----SPHQR 902

Query: 767 KVVS-EGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIR 814
              + EG +D S   K ++SP K QIDLN QPERE+E SP SD+  ++R
Sbjct: 903 ADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQSPKSDATRLLR 951

Oryza sativa subsp. japonica (taxid: 39947)

>sp\|Q8W4L5\|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1	Back alignment and function description

>sp\|Q5CCK4\|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1	Back alignment and function description

>sp\|Q6Z3U3\|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1	Back alignment and function description

>sp\|O65420\|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3	Back alignment and function description

>sp\|Q7XKC4\|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2	Back alignment and function description

>sp\|Q9LW31\|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2	Back alignment and function description

>sp\|Q7XKC5\|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1	Back alignment and function description

>sp\|Q6Z1Z3\|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1	Back alignment and function description

>sp\|A4LBC0\|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		886
449433878		896	PREDICTED: B3 domain-containing protein	0.985	0.974	0.698	0.0
224076806		918	predicted protein [Populus trichocarpa]	0.970	0.936	0.698	0.0
449479362		899	PREDICTED: LOW QUALITY PROTEIN: B3 domai	0.988	0.974	0.695	0.0
255560846		854	transcription factor, putative [Ricinus	0.952	0.988	0.709	0.0
356549413		855	PREDICTED: B3 domain-containing protein	0.949	0.983	0.668	0.0
356549411		889	PREDICTED: B3 domain-containing protein	0.975	0.971	0.668	0.0
357446313		888	B3 domain-containing transcription repre	0.968	0.966	0.679	0.0
356555034		854	PREDICTED: B3 domain-containing protein	0.942	0.977	0.668	0.0
224116220		842	predicted protein [Populus trichocarpa]	0.734	0.773	0.711	0.0
302144200		601	unnamed protein product [Vitis vinifera]	0.664	0.980	0.721	0.0

>gi\|449433878\|ref\|XP_004134723.1\| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1262 bits (3265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/883 (69%), Positives = 720/883 (81%), Gaps = 10/883 (1%)

Query: 8   CFNKECKELKSERPRKGWLLRGGEFAELCDRCGSIYEEGRFCDTFHVNASGWRCCESCGK 67
           C+N +CKEL+ +R RKGW LR G+FAELCDRC S YEEGRFC+TFH+NASGWRCCESCGK
Sbjct: 20  CYNSDCKELRPDRSRKGWRLRTGDFAELCDRCASAYEEGRFCETFHLNASGWRCCESCGK 79

Query: 68  RVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKN 127
           RVHCGCI S HAFTLLD GGIECMTCARKNV++   P+WPPSL + +  P+R+K+LSVKN
Sbjct: 80  RVHCGCIVSAHAFTLLDPGGIECMTCARKNVILPLNPAWPPSLLFHSALPDRLKELSVKN 139

Query: 128 WTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRK 187
           W+QLAGSGPVPWRQAPS+FNSS+P  EL  R PYEVD+SA ++++N SERL V SLEKRK
Sbjct: 140 WSQLAGSGPVPWRQAPSMFNSSLPSGELHHRAPYEVDISAALNKLNTSERLPV-SLEKRK 198

Query: 188 LEDFSERLMNGGLK-SGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLA 246
            EDFSER +NG LK  GS  +      G  CD +PSSC N P+QSS +K+DSST  +GL 
Sbjct: 199 NEDFSERFLNGSLKPCGSVLV---VMRGIKCDDKPSSCSNMPKQSSFVKEDSSTMQYGLN 255

Query: 247 VSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGR 306
           + YA P+E +++  +SG+HLRP     L KQ H NL NGADS  ETQ+RNGRPR ++RG+
Sbjct: 256 IPYAPPNEPSARGRISGTHLRPTPLSSLPKQIHTNLQNGADSSNETQLRNGRPRGESRGK 315

Query: 307 SQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPI 366
           + LLPRYWPRFTDQ+LQQIS DSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP I
Sbjct: 316 NYLLPRYWPRFTDQELQQISVDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPSI 375

Query: 367 SQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEP 426
           SQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSRLEP
Sbjct: 376 SQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEP 435

Query: 427 EGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGA 486
           EGKLVMGFRKAS  + +DQ+NE NK   G P +G AELADP+SW+KVDKSGYIA E LGA
Sbjct: 436 EGKLVMGFRKAS--ATADQENETNKTKNGAPVHGDAELADPNSWTKVDKSGYIAKEVLGA 493

Query: 487 KSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFE 546
           K SISRKRKN+TLGSKSKRL+I+NED+IELK+TWEEAQGLLRPPPN VP+++VIEG+EFE
Sbjct: 494 KPSISRKRKNSTLGSKSKRLRIDNEDMIELKITWEEAQGLLRPPPNQVPNILVIEGFEFE 553

Query: 547 EYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSV 606
            YE+AP+LGKP+I   DN GE+IQW QCEDC KWRK+PA+A LPSKWTCS N W+PERS 
Sbjct: 554 AYEEAPVLGKPSIIPPDNTGERIQWTQCEDCLKWRKLPASALLPSKWTCSDNSWEPERSF 613

Query: 607 CSVAQELREEQLEDLIAPNNP-ASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLT 665
           CS  QEL  EQLE+L++P N  A  KK+KAAK EPD VEALEGLDTLANLAILGEGE   
Sbjct: 614 CSAPQELSTEQLEELLSPGNSVAPVKKMKAAKLEPDNVEALEGLDTLANLAILGEGEASQ 673

Query: 666 ASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQS 725
              QATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRF TLMLRREKKQ 
Sbjct: 674 TPGQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQF 733

Query: 726 EKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTS 785
           EK+AET R++ + Q    P++S D++ L+CS T  +   E+  +++GSD+D +R K STS
Sbjct: 734 EKEAETMRQRHKFQDEMFPDRSMDEESLTCSNTSTSKLMEEGKMNDGSDEDPNRNKPSTS 793

Query: 786 PFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVD--NEG 843
           PFKGQIDLN+QPEREEELSPGSDSGSM+++LQD  +++L QQR +S G  +SS D    G
Sbjct: 794 PFKGQIDLNMQPEREEELSPGSDSGSMMKMLQDTGDRFLEQQRSNSGGTRSSSSDPLEPG 853

Query: 844 LQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG 886
            +    GE  SN I L  ++ D D+DH  +LS+  SAS+S TG
Sbjct: 854 GEREHKGESSSNVIDLSSNNLDADKDHPATLSLNPSASMSTTG 896

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224076806\|ref\|XP_002305001.1\| predicted protein [Populus trichocarpa] gi\|222847965\|gb\|EEE85512.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449479362\|ref\|XP_004155579.1\| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255560846\|ref\|XP_002521436.1\| transcription factor, putative [Ricinus communis] gi\|223539335\|gb\|EEF40926.1\| transcription factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356549413\|ref\|XP_003543088.1\| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|356549411\|ref\|XP_003543087.1\| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|357446313\|ref\|XP_003593434.1\| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi\|355482482\|gb\|AES63685.1\| B3 domain-containing transcription repressor VAL2 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356555034\|ref\|XP_003545844.1\| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max]	Back alignment and taxonomy information

>gi\|224116220\|ref\|XP_002317242.1\| predicted protein [Populus trichocarpa] gi\|222860307\|gb\|EEE97854.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302144200\|emb\|CBI23327.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		886
TAIR\|locus:2116592		780	HSL1 "HSI2-like 1" [Arabidopsi	0.555	0.630	0.502	6.7e-161
TAIR\|locus:2064417		790	HSI2 "high-level expression of	0.690	0.774	0.429	8.8e-153
TAIR\|locus:2088439		313	FUS3 "FUSCA 3" [Arabidopsis th	0.125	0.354	0.412	1.5e-16
TAIR\|locus:2039165		244	ABS2 "ABNORMAL SHOOT 2" [Arabi	0.138	0.504	0.382	3.2e-15
UNIPROTKB\|Q6Z1Z3		362	IDEF1 "B3 domain-containing pr	0.213	0.522	0.326	3.9e-15
UNIPROTKB\|Q7XKC5		433	LOC_Os04g58000 "B3 domain-cont	0.115	0.235	0.456	5e-15
UNIPROTKB\|A4LBC0		402	LFL1 "B3 domain-containing pro	0.243	0.537	0.293	3e-14
TAIR\|locus:2032170		363	LEC2 "LEAFY COTYLEDON 2" [Arab	0.203	0.495	0.308	2.7e-13
TAIR\|locus:2093166		720	ABI3 "AT3G24650" [Arabidopsis	0.174	0.215	0.331	2.8e-13
TAIR\|locus:2164215		282	DPA4 "DEVELOPMENT-RELATED PcG	0.190	0.599	0.293	1.8e-12

TAIR\|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1260 (448.6 bits), Expect = 6.7e-161, Sum P(3) = 6.7e-161
 Identities = 259/515 (50%), Positives = 341/515 (66%)

Query:   253 SETNS--QIGVSGSHL--RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQ 308
             S+TNS  Q+      L  +P    P+     G  P+G  SL  +Q+   RP  + RG++Q
Sbjct:   200 SKTNSIFQLAPRSRQLLPKPANSAPIAA---GMEPSG--SL-VSQIHVARPPPEGRGKTQ 253

Query:   309 LLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP 364
             LLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP
Sbjct:   254 LLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFP 313

Query:   365 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 424
             PIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR 
Sbjct:   314 PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRT 373

Query:   425 EPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEAL 484
             EPEGKLVMG+RKA++++A+     +++    + +N         +WSK++KS  +A + L
Sbjct:   374 EPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNL 433

Query:   485 GAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGY 543
               +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ LLR           +E  
Sbjct:   434 FLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQ 493

Query:   544 EFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPE 603
             +FEEY++ P+ GK T+F +   GE+ QWVQC+ C KWR++P +  LP KW+CS NL DP 
Sbjct:   494 DFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPG 553

Query:   604 RSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEG 663
             RS CS   EL   + + L+  +     ++L ++ ++ +  +    L++L N  I   GE 
Sbjct:   554 RSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGITTTGEQ 613

Query:   664 LTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK 723
                +  ATTKHPRHR GCSCIVC QPPSGKG KHK +CTC VC  VKRRF TLMLR+  K
Sbjct:   614 GEITVAATTKHPRHRAGCSCIVCSQPPSGKG-KHKPSCTCTVCEAVKRRFRTLMLRKRNK 672

Query:   724 ----QSEKDAETS---RKKQQQQKLPVPEKSADDD 751
                 Q+ + A++    R + + + +P  E +A ++
Sbjct:   673 GEAGQASQQAQSQSECRDETEVESIPAVELAAGEN 707

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010030 "positive regulation of seed germination" evidence=IGI

GO:2000034 "regulation of seed maturation" evidence=IGI

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009790 "embryo development" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048316 "seed development" evidence=RCA

GO:0048366 "leaf development" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0051301 "cell division" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR\|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164215 DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0D5G4	Y7633_ORYSJ	No assigned EC number	0.5084	0.8927	0.8282	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		886
cd10017		98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	7e-22
pfam02362		97	pfam02362, B3, B3 DNA binding domain	2e-19
smart01019		96	smart01019, B3, B3 DNA binding domain	6e-17
pfam07496		50	pfam07496, zf-CW, CW-type Zinc Finger	1e-11
cd10015		109	cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o	3e-08

>gnl\|CDD\|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain	Back alignment and domain information

 Score = 90.5 bits (225), Expect = 7e-22
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 335 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 394
           PLF K+L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 395 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 436
             RM +  G    ++   L+ GD + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl\|CDD\|216995 pfam02362, B3, B3 DNA binding domain	Back alignment and domain information

>gnl\|CDD\|214977 smart01019, B3, B3 DNA binding domain	Back alignment and domain information

>gnl\|CDD\|219431 pfam07496, zf-CW, CW-type Zinc Finger	Back alignment and domain information

>gnl\|CDD\|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		886
PF02362		100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.63
PF07496		50	zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi	99.55
PF03754		114	DUF313: Domain of unknown function (DUF313) ; Inte	97.85
PF09217		156	EcoRII-N: Restriction endonuclease EcoRII, N-termi	97.58
PF00320		36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	88.28
cd00202		54	ZnF_GATA Zinc finger DNA binding domain; binds spe	88.22
smart00401		52	ZnF_GATA zinc finger binding to DNA consensus sequ	83.57

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species	Back alignment and domain information

Probab=99.63  E-value=1.5e-15  Score=134.08  Aligned_cols=98  Identities=24%  Similarity=0.437  Sum_probs=70.0

Q ss_pred             EEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccc-cCchhhhhccCCCC
Q 002739          337 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQA  415 (886)
Q Consensus       337 F~KvLT~SDVgslgRLVIPKk~AEs~FPpL~~~eG~~L~v~D~~GK~W~FRfryw~Nn~SR~YVL-eGWs~FVRsK~Lqa  415 (886)
                      |.|+|+++|+....+|+||++.++.|.  +....++.|.++|..|+.|.+++.++. +..+ |+| .||..||++++|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~-~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYRK-NSGR-YYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEEC-CTTE-EEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCe-EEECCCHHHHHHHcCCCC
Confidence            899999999998889999999999982  122357899999999999999999883 3334 555 69999999999999


Q ss_pred             CCEEEEEEec-CCCeEEEEEEeCC
Q 002739          416 GDIVTFSRLE-PEGKLVMGFRKAS  438 (886)
Q Consensus       416 GDtVvF~R~e-~~GkL~IGVRRas  438 (886)
                      ||+|+|+... ...++.|.+.|++
T Consensus        77 GD~~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   77 GDVCVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             T-EEEEEE-SSSCE-EEEEEE---
T ss_pred             CCEEEEEEecCCCceEEEEEEECc
Confidence            9999999975 3446699988763

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function	Back alignment and domain information

>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV	Back alignment and domain information

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C	Back alignment and domain information

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		886
1wid_A		130	Solution Structure Of The B3 Dna-Binding Domain Of		1e-13
2l7p_A		100	Ashh2 A Cw Domain Length = 100		1e-04

>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130

Back alignment and structure

Iteration: 1

Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 10/116 (8%) Query: 336 LFEKMLSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWP 392 LFEK ++ SD G++ RLV+PK AE +FP P S +G+ L +D GK W F++ +W Sbjct: 13 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71 Query: 393 NNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQD 446 N+S+ YVL +G + ++ L+AGD+V+FSR + +L +G++ S S SD D Sbjct: 72 -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLD 123

PyMOL of 1wid

>pdb|2L7P|A Chain A, Ashh2 A Cw Domain Length = 100

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		886
1wid_A		130	DNA-binding protein RAV1; DNA-binding domain, stru	4e-27
2l7p_A		100	Histone-lysine N-methyltransferase ASHH2; CW-domai	5e-15
2e61_A		69	Zinc finger CW-type PWWP domain protein 1; ZF-CW d	2e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130	Back alignment and structure

 Score =  105 bits (264), Expect = 4e-27
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 326 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGK 382
           SG S      LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 383 EWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA 440
            W F++ +W  N+S+ YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 441 SAS 443
              
Sbjct: 121 DLD 123

PyMOL of 1wid

>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100	Back alignment and structure

>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 71.4 bits (174), Expect = 1e-12
 Identities = 91/667 (13%), Positives = 188/667 (28%), Gaps = 212/667 (31%)

Query: 112 YQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAG--- 168
           ++  F   + +   K+  Q      +   +   +  S            +   LS     
Sbjct: 25  FEDAF---VDNFDCKD-VQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEM 78

Query: 169 -------IDRINAS---ERLSV----PSLEKRKLEDFSERLMNGGLKSGSRDIP--ENAN 212
                  + RIN       +      PS+  R   +  +RL N        ++   +   
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 213 AGSNC--DMQPS-------------SCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNS 257
                  +++P+             + +                     + + +    NS
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 258 QIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVR----NGRPR---VDARGRSQLL 310
                 + L  + +  L+ Q   N  + +D     ++R        R         + LL
Sbjct: 195 ----PETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 311 -------PRYWPRF--------TDQDLQ---QISGDSNSVI---------TP-----LFE 338
                   + W  F        T +  Q    +S  + + I         TP     L  
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 339 KML--SASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIF--QFRFWPN- 393
           K L     D        LP+   E            P ++        I     R     
Sbjct: 309 KYLDCRPQD--------LPR---EV-------LTTNPRRLS-------IIAESIRDGLAT 343

Query: 394 -NNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEG------KLVMGFRKASSASASDQD 446
            +N +    + +T  I+          + + LEP        +L + F            
Sbjct: 344 WDNWKHVNCDKLTTIIE---------SSLNVLEPAEYRKMFDRLSV-FPP---------- 383

Query: 447 NEANKAGTGIPANGHAELADPSSWSKVDKS--GYIATEALGAKSSISRKRKNTTLG---- 500
                    IP    + +     W  V KS    +  + L   S + ++ K +T+     
Sbjct: 384 ------SAHIPTILLSLI-----WFDVIKSDVMVVVNK-LHKYSLVEKQPKESTISIPSI 431

Query: 501 SKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEF----------EEYED 550
               ++K+ENE  +   +   +   + +   ++      ++ Y +          E  E 
Sbjct: 432 YLELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 551 APILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVA 610
             +     +F  D      ++++     K R                  W+   S+ +  
Sbjct: 490 MTLF--RMVF-LD-----FRFLE----QKIRH-------------DSTAWNASGSILNTL 524

Query: 611 QELREEQLEDLIAPNNPASSKKLKA-----AKQEPDCVEALEGLDTLANLAILGEGEGL- 664
           Q+L+    +  I  N+P   + + A      K E + + + +  D L  +A++ E E + 
Sbjct: 525 QQLK--FYKPYICDNDPKYERLVNAILDFLPKIEENLICS-KYTD-LLRIALMAEDEAIF 580

Query: 665 -TASSQA 670
             A  Q 
Sbjct: 581 EEAHKQV 587

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		886
d1wida_		117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	2e-29
d1na6a1		175	b.142.1.1 (A:4-178) Restriction endonuclease EcoRI	3e-22
d1yela1		102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	3e-12

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117	Back information, alignment and structure


class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (277), Expect = 2e-29
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 334 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRF 390
             LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +
Sbjct: 4   EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 63

Query: 391 WPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 441
           W ++ S +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 64  WNSSQSYVL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114

PyMOL of d1wida_

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175	Back information, alignment and structure

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		886
d1wida_		117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.88
d1na6a1		175	Restriction endonuclease EcoRII, N-terminal domain	99.59
d1yela1		102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.2
d1y0ja1		39	Erythroid transcription factor GATA-1 {Mouse (Mus	90.66
d3gata_		66	Erythroid transcription factor GATA-1 {Chicken (Ga	86.81
d2vuti1		42	Erythroid transcription factor GATA-1 {Emericella	82.41

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=2.4e-22  Score=172.02  Aligned_cols=107  Identities=38%  Similarity=0.752  Sum_probs=94.0

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEHHHHHHCCCCCCC---CCCCEEEEEECCCCEEEEEEEECCCCCCCCCCC-CCCHHHH
Q ss_conf             011099845504479999598302335310999999---999339999699993999999929999855012-3822364
Q 002739          333 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCI  408 (886)
Q Consensus       333 ~~~LF~KvLT~SDVgslgRLVIPKk~AEa~FPpL~~---~egi~L~V~D~~GK~W~FRfsyw~NN~SR~YVL-tGW~~FV  408 (886)
                      ..++|+|+||+|||++.+||+||+.+|++|||+++.   .+++.|.+.|..|++|.|+|++|.  +.+.|++ .||..||
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~--~~~~~~l~~GW~~Fv   80 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN--SSQSYVLTKGWSRFV   80 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEET--TTTEEEEESSHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEC--CCCCEEEECCHHHHH
T ss_conf             764799991112008988899778999973895434567770799999599999999999988--998347745779988


Q ss_pred             HCCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCC
Q ss_conf             20588789889999745-9982999999579976
Q 002739          409 QNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSAS  441 (886)
Q Consensus       409 RsK~LkaGDtVvF~R~e-~~GkL~IGVRRa~~~~  441 (886)
                      ++++|++||+|+|++.+ .+++|+|++||+....
T Consensus        81 ~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~~  114 (117)
T d1wida_          81 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  114 (117)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHCCCCCCCEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf             8749997999999998189988999999999999

PyMOL of d1wida_

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure