Query 002740
Match_columns 885
No_of_seqs 571 out of 4258
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:09:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 8.4E-79 1.8E-83 599.9 17.3 284 531-838 3-286 (303)
2 KOG0374 Serine/threonine speci 100.0 1.1E-73 2.4E-78 617.5 26.9 295 531-838 9-304 (331)
3 KOG0373 Serine/threonine speci 100.0 1.7E-71 3.7E-76 538.5 17.1 286 531-840 6-292 (306)
4 PTZ00480 serine/threonine-prot 100.0 3.5E-69 7.5E-74 580.9 30.6 294 531-840 11-304 (320)
5 cd07420 MPP_RdgC Drosophila me 100.0 2.1E-68 4.7E-73 575.9 31.5 285 530-834 6-320 (321)
6 cd07419 MPP_Bsu1_C Arabidopsis 100.0 5.5E-68 1.2E-72 577.4 29.9 303 534-836 1-311 (311)
7 PTZ00244 serine/threonine-prot 100.0 1.1E-67 2.3E-72 567.1 29.2 291 529-835 2-292 (294)
8 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 1.6E-67 3.5E-72 564.8 30.2 283 531-837 2-284 (285)
9 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.7E-67 3.6E-72 566.8 29.1 290 531-836 2-291 (293)
10 PTZ00239 serine/threonine prot 100.0 3.8E-67 8.3E-72 564.3 30.6 285 531-839 3-288 (303)
11 cd07417 MPP_PP5_C PP5, C-termi 100.0 6.7E-66 1.5E-70 558.6 29.9 291 527-841 12-308 (316)
12 cd07416 MPP_PP2B PP2B, metallo 100.0 3.8E-65 8.2E-70 552.3 31.6 286 532-840 4-300 (305)
13 smart00156 PP2Ac Protein phosp 100.0 5.8E-65 1.3E-69 543.7 29.4 269 554-836 1-269 (271)
14 cd07418 MPP_PP7 PP7, metalloph 100.0 1.5E-62 3.3E-67 536.8 31.5 299 527-835 8-364 (377)
15 KOG0371 Serine/threonine prote 100.0 4.7E-63 1E-67 491.4 12.8 286 531-840 20-305 (319)
16 KOG0375 Serine-threonine phosp 100.0 1E-62 2.2E-67 507.2 12.1 271 553-836 60-341 (517)
17 KOG0377 Protein serine/threoni 100.0 6E-53 1.3E-57 444.6 15.5 280 531-831 121-426 (631)
18 KOG0376 Serine-threonine phosp 100.0 2.9E-46 6.3E-51 406.8 14.1 274 553-840 182-461 (476)
19 PLN02193 nitrile-specifier pro 100.0 1.3E-36 2.9E-41 352.6 39.0 304 17-362 150-469 (470)
20 PLN02153 epithiospecifier prot 100.0 2.3E-36 5.1E-41 337.9 37.4 306 15-361 4-339 (341)
21 KOG4693 Uncharacterized conser 100.0 2.4E-36 5.2E-41 302.4 25.1 290 19-347 3-312 (392)
22 PLN02193 nitrile-specifier pro 100.0 1.9E-32 4.1E-37 318.0 36.9 281 45-368 120-417 (470)
23 KOG4152 Host cell transcriptio 100.0 5.1E-34 1.1E-38 306.3 20.8 303 22-362 25-364 (830)
24 KOG1230 Protein containing rep 100.0 9.3E-34 2E-38 299.3 22.1 325 19-364 56-474 (521)
25 KOG4441 Proteins containing BT 100.0 3.8E-32 8.2E-37 319.4 30.8 269 45-367 284-552 (571)
26 KOG4441 Proteins containing BT 100.0 1.2E-31 2.6E-36 315.2 28.3 256 6-306 299-556 (571)
27 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-30 2.2E-35 293.2 32.9 279 24-359 2-344 (346)
28 KOG4693 Uncharacterized conser 100.0 1.2E-31 2.6E-36 268.8 20.6 242 12-279 48-313 (392)
29 KOG0379 Kelch repeat-containin 100.0 1.1E-30 2.5E-35 302.4 30.4 296 23-362 54-358 (482)
30 PRK14131 N-acetylneuraminic ac 100.0 2.5E-30 5.4E-35 292.8 31.7 288 18-362 17-369 (376)
31 PHA02713 hypothetical protein; 100.0 1.7E-30 3.8E-35 306.6 31.5 252 74-368 271-540 (557)
32 PHA02713 hypothetical protein; 100.0 6.5E-31 1.4E-35 310.2 26.9 252 10-307 274-544 (557)
33 PLN02153 epithiospecifier prot 100.0 6.5E-30 1.4E-34 285.9 33.3 262 83-368 5-291 (341)
34 TIGR03548 mutarot_permut cycli 100.0 9E-30 1.9E-34 282.7 32.1 274 28-347 2-313 (323)
35 cd00144 MPP_PPP_family phospho 100.0 9.8E-31 2.1E-35 275.2 19.9 218 584-822 1-224 (225)
36 KOG0379 Kelch repeat-containin 100.0 2.4E-28 5.3E-33 283.0 27.5 253 91-368 52-308 (482)
37 PHA03098 kelch-like protein; P 100.0 5.5E-28 1.2E-32 286.7 30.4 254 11-308 267-523 (534)
38 PHA03098 kelch-like protein; P 100.0 9.7E-28 2.1E-32 284.6 30.7 254 75-367 264-517 (534)
39 TIGR03548 mutarot_permut cycli 100.0 2.2E-26 4.7E-31 255.6 28.1 230 19-281 52-316 (323)
40 KOG1230 Protein containing rep 99.9 3.4E-27 7.4E-32 249.8 16.6 219 9-243 99-342 (521)
41 PRK14131 N-acetylneuraminic ac 99.9 4E-25 8.7E-30 250.3 27.8 257 12-302 54-374 (376)
42 PHA02790 Kelch-like protein; P 99.9 9.6E-25 2.1E-29 254.3 29.8 208 45-304 271-478 (480)
43 TIGR03547 muta_rot_YjhT mutatr 99.9 1.1E-24 2.5E-29 244.2 27.6 248 11-293 32-343 (346)
44 KOG4152 Host cell transcriptio 99.9 1.9E-25 4.2E-30 240.5 17.8 260 11-296 60-363 (830)
45 PHA02790 Kelch-like protein; P 99.9 2E-23 4.4E-28 243.2 29.0 209 105-366 267-475 (480)
46 cd07425 MPP_Shelphs Shewanella 99.9 1.5E-22 3.3E-27 209.3 14.6 185 584-807 1-196 (208)
47 PRK13625 bis(5'-nucleosyl)-tet 99.9 3.2E-22 7E-27 212.4 12.6 131 582-714 2-146 (245)
48 cd07422 MPP_ApaH Escherichia c 99.8 5.2E-21 1.1E-25 202.5 10.6 160 583-761 1-169 (257)
49 cd07423 MPP_PrpE Bacillus subt 99.8 9.6E-21 2.1E-25 200.2 11.7 130 581-713 1-142 (234)
50 cd07413 MPP_PA3087 Pseudomonas 99.8 5.2E-20 1.1E-24 192.5 16.6 123 584-711 2-143 (222)
51 PRK00166 apaH diadenosine tetr 99.8 7.7E-20 1.7E-24 195.7 16.5 121 582-714 2-127 (275)
52 TIGR00668 apaH bis(5'-nucleosy 99.8 3.4E-20 7.3E-25 196.0 11.7 127 582-722 2-134 (279)
53 cd07421 MPP_Rhilphs Rhilph pho 99.8 8.9E-19 1.9E-23 184.8 19.2 158 582-745 3-243 (304)
54 PRK11439 pphA serine/threonine 99.8 6.4E-19 1.4E-23 184.1 12.0 120 581-711 17-146 (218)
55 cd07424 MPP_PrpA_PrpB PrpA and 99.8 1.8E-18 3.8E-23 179.6 13.2 122 581-713 1-132 (207)
56 PHA02239 putative protein phos 99.8 3.2E-18 6.9E-23 179.7 14.8 140 582-744 2-184 (235)
57 PRK09968 serine/threonine-spec 99.7 1.8E-17 3.8E-22 173.0 10.8 120 581-711 15-144 (218)
58 COG3055 Uncharacterized protei 99.7 8.3E-15 1.8E-19 155.0 23.7 284 21-360 28-373 (381)
59 KOG2437 Muskelin [Signal trans 99.6 3.2E-16 7E-21 169.9 2.8 314 25-362 256-613 (723)
60 COG3055 Uncharacterized protei 99.5 6.4E-13 1.4E-17 140.8 19.3 239 16-283 68-364 (381)
61 KOG2437 Muskelin [Signal trans 99.4 1E-13 2.2E-18 150.7 5.8 207 138-358 239-468 (723)
62 PF00149 Metallophos: Calcineu 99.0 3.4E-09 7.4E-14 104.5 11.2 162 582-789 2-199 (200)
63 COG0639 ApaH Diadenosine tetra 98.8 9.3E-09 2E-13 100.0 6.6 147 659-812 2-155 (155)
64 PF13964 Kelch_6: Kelch motif 98.7 3E-08 6.5E-13 78.1 6.5 50 29-100 1-50 (50)
65 cd00841 MPP_YfcE Escherichia c 98.7 3.6E-07 7.9E-12 90.2 15.5 60 582-659 1-60 (155)
66 PF13964 Kelch_6: Kelch motif 98.7 4.5E-08 9.8E-13 77.1 6.4 50 99-153 1-50 (50)
67 PRK09453 phosphodiesterase; Pr 98.6 1E-07 2.3E-12 96.9 9.2 68 582-659 2-77 (182)
68 PLN02772 guanylate kinase 98.6 1.8E-07 3.8E-12 103.9 11.5 89 97-189 22-110 (398)
69 PF13415 Kelch_3: Galactose ox 98.6 8E-08 1.7E-12 75.3 6.2 49 45-108 1-49 (49)
70 PLN02772 guanylate kinase 98.6 2.4E-07 5.1E-12 102.9 11.4 91 147-243 19-110 (398)
71 PF12850 Metallophos_2: Calcin 98.6 7.9E-07 1.7E-11 87.5 13.5 60 582-659 2-61 (156)
72 PF13415 Kelch_3: Galactose ox 98.5 2.1E-07 4.6E-12 72.9 6.1 48 109-161 1-49 (49)
73 TIGR00040 yfcE phosphoesterase 98.5 3.2E-06 6.9E-11 83.9 14.9 62 582-658 2-64 (158)
74 PF07646 Kelch_2: Kelch motif; 98.5 4.4E-07 9.6E-12 71.1 6.4 49 29-94 1-49 (49)
75 PF07646 Kelch_2: Kelch motif; 98.5 4.5E-07 9.8E-12 71.1 6.4 48 258-306 1-48 (49)
76 PF03089 RAG2: Recombination a 98.4 3E-05 6.6E-10 80.6 20.6 167 111-282 40-233 (337)
77 cd07379 MPP_239FB Homo sapiens 98.4 2E-06 4.2E-11 83.0 11.2 118 582-794 1-120 (135)
78 PF13418 Kelch_4: Galactose ox 98.4 3.8E-07 8.2E-12 71.5 4.3 45 152-198 1-46 (49)
79 cd07388 MPP_Tt1561 Thermus the 98.4 3.3E-06 7.2E-11 88.2 12.5 70 582-658 6-75 (224)
80 PF01344 Kelch_1: Kelch motif; 98.3 4.9E-07 1.1E-11 70.0 4.3 46 29-93 1-46 (47)
81 cd07397 MPP_DevT Myxococcus xa 98.3 2.8E-06 6.1E-11 88.9 10.9 113 582-713 2-160 (238)
82 PF01344 Kelch_1: Kelch motif; 98.3 8.8E-07 1.9E-11 68.6 4.9 46 258-306 1-46 (47)
83 PF13854 Kelch_5: Kelch motif 98.3 1.3E-06 2.7E-11 66.1 5.2 39 325-363 2-42 (42)
84 PF13418 Kelch_4: Galactose ox 98.3 9E-07 1.9E-11 69.3 4.5 47 99-150 1-48 (49)
85 PF13854 Kelch_5: Kelch motif 98.2 2E-06 4.3E-11 65.0 5.4 40 96-135 1-41 (42)
86 cd00838 MPP_superfamily metall 98.2 1.1E-05 2.3E-10 76.0 11.4 117 584-794 1-119 (131)
87 cd07394 MPP_Vps29 Homo sapiens 98.0 0.00018 4E-09 72.8 16.7 59 582-658 1-65 (178)
88 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00028 6E-09 74.3 18.3 153 128-309 48-211 (243)
89 cd07392 MPP_PAE1087 Pyrobaculu 98.0 0.00014 3.1E-09 73.8 14.6 65 583-659 1-66 (188)
90 PF03089 RAG2: Recombination a 97.9 0.0015 3.2E-08 68.3 21.0 184 25-229 18-232 (337)
91 smart00612 Kelch Kelch domain. 97.9 1.7E-05 3.7E-10 60.9 4.7 47 47-110 1-47 (47)
92 smart00612 Kelch Kelch domain. 97.7 4.9E-05 1.1E-09 58.3 5.1 45 165-214 1-45 (47)
93 cd07403 MPP_TTHA0053 Thermus t 97.7 0.00028 6.1E-09 67.4 11.4 56 584-656 1-56 (129)
94 PF07250 Glyoxal_oxid_N: Glyox 97.7 0.0012 2.7E-08 69.5 16.7 163 75-260 46-214 (243)
95 PRK05340 UDP-2,3-diacylglucosa 97.6 0.00016 3.4E-09 77.1 8.1 206 582-826 2-231 (241)
96 TIGR01854 lipid_A_lpxH UDP-2,3 97.6 0.00046 1E-08 73.0 10.8 207 583-826 1-229 (231)
97 KOG0376 Serine-threonine phosp 97.5 1.8E-05 3.8E-10 88.5 -0.2 243 553-812 14-299 (476)
98 cd07399 MPP_YvnB Bacillus subt 97.5 0.0053 1.2E-07 64.1 18.2 71 765-836 135-213 (214)
99 cd07400 MPP_YydB Bacillus subt 97.5 0.0016 3.5E-08 63.2 13.3 29 766-794 101-129 (144)
100 cd07404 MPP_MS158 Microscilla 97.5 9.3E-05 2E-09 73.9 4.3 67 583-658 1-68 (166)
101 PRK11340 phosphodiesterase Yae 97.4 0.00033 7.2E-09 75.9 7.7 70 581-658 50-125 (271)
102 TIGR01640 F_box_assoc_1 F-box 97.3 0.042 9E-07 57.9 21.9 203 75-298 14-230 (230)
103 cd07385 MPP_YkuE_C Bacillus su 97.3 0.00041 8.9E-09 72.7 6.3 70 582-659 3-77 (223)
104 COG0622 Predicted phosphoester 97.2 0.013 2.7E-07 58.8 16.1 64 582-659 3-66 (172)
105 PRK11138 outer membrane biogen 97.1 0.33 7.1E-06 55.6 28.4 219 75-362 79-313 (394)
106 TIGR03729 acc_ester putative p 97.0 0.0013 2.8E-08 69.9 7.4 68 582-658 1-74 (239)
107 PRK11138 outer membrane biogen 97.0 0.29 6.3E-06 56.0 27.1 217 75-362 130-354 (394)
108 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0026 5.5E-08 63.8 8.6 40 616-660 45-84 (168)
109 TIGR01640 F_box_assoc_1 F-box 96.9 0.12 2.5E-06 54.5 20.8 188 10-224 16-215 (230)
110 cd07395 MPP_CSTP1 Homo sapiens 96.8 0.047 1E-06 58.8 17.4 59 767-827 195-254 (262)
111 cd00844 MPP_Dbr1_N Dbr1 RNA la 96.8 0.0023 5E-08 68.7 7.0 70 583-658 1-86 (262)
112 cd07396 MPP_Nbla03831 Homo sap 96.8 0.0031 6.7E-08 68.2 8.1 73 582-660 2-88 (267)
113 cd00840 MPP_Mre11_N Mre11 nucl 96.8 0.0026 5.6E-08 66.4 6.9 73 582-660 1-91 (223)
114 PRK04036 DNA polymerase II sma 96.7 0.0068 1.5E-07 71.4 10.0 120 580-710 243-388 (504)
115 cd07391 MPP_PF1019 Pyrococcus 96.6 0.0042 9E-08 62.5 6.7 44 616-659 44-89 (172)
116 cd07398 MPP_YbbF-LpxH Escheric 96.6 0.005 1.1E-07 64.2 7.1 28 765-792 176-203 (217)
117 PHA02546 47 endonuclease subun 96.5 0.0049 1.1E-07 69.1 7.3 72 582-659 2-90 (340)
118 cd07402 MPP_GpdQ Enterobacter 96.5 0.0086 1.9E-07 63.4 8.3 69 582-658 1-83 (240)
119 KOG0918 Selenium-binding prote 96.5 0.00026 5.7E-09 76.9 -3.3 209 614-836 48-262 (476)
120 TIGR03300 assembly_YfgL outer 96.4 2.3 4.9E-05 48.3 28.2 183 75-302 115-305 (377)
121 PF13360 PQQ_2: PQQ-like domai 96.4 1.5 3.4E-05 45.7 28.5 215 75-362 3-231 (238)
122 COG1409 Icc Predicted phosphoh 96.4 0.095 2.1E-06 57.0 16.1 73 582-662 2-82 (301)
123 TIGR00619 sbcd exonuclease Sbc 96.3 0.0081 1.8E-07 64.4 7.0 72 582-659 2-89 (253)
124 TIGR00024 SbcD_rel_arch putati 96.2 0.015 3.2E-07 61.1 8.1 69 581-659 15-103 (225)
125 cd08165 MPP_MPPE1 human MPPE1 96.1 0.0083 1.8E-07 59.4 5.5 44 616-659 41-90 (156)
126 cd07386 MPP_DNA_pol_II_small_a 96.1 0.018 3.8E-07 61.4 8.4 42 616-659 38-95 (243)
127 PF13360 PQQ_2: PQQ-like domai 96.1 2.2 4.7E-05 44.6 28.5 183 74-299 45-233 (238)
128 PRK11148 cyclic 3',5'-adenosin 96.1 0.016 3.5E-07 63.0 8.0 70 581-658 15-98 (275)
129 PRK10966 exonuclease subunit S 96.0 0.012 2.7E-07 67.3 7.1 71 582-659 2-88 (407)
130 cd00839 MPP_PAPs purple acid p 96.0 0.035 7.5E-07 60.8 10.2 37 766-802 181-217 (294)
131 cd07393 MPP_DR1119 Deinococcus 95.9 0.02 4.3E-07 60.6 7.4 46 766-813 181-229 (232)
132 cd07383 MPP_Dcr2 Saccharomyces 95.9 0.025 5.4E-07 58.3 7.9 41 616-656 44-87 (199)
133 TIGR03300 assembly_YfgL outer 95.9 2.9 6.3E-05 47.4 25.5 180 75-299 155-341 (377)
134 TIGR00583 mre11 DNA repair pro 95.6 0.031 6.8E-07 63.7 8.0 72 582-659 5-124 (405)
135 cd08163 MPP_Cdc1 Saccharomyces 95.6 0.31 6.7E-06 52.4 15.1 36 753-788 188-226 (257)
136 cd00216 PQQ_DH Dehydrogenases 95.4 7.7 0.00017 45.8 28.7 203 74-302 174-432 (488)
137 cd07401 MPP_TMEM62_N Homo sapi 95.2 0.04 8.7E-07 59.2 6.9 27 770-796 190-216 (256)
138 COG2129 Predicted phosphoester 94.9 2.6 5.7E-05 43.6 18.5 205 581-826 4-217 (226)
139 COG2908 Uncharacterized protei 94.9 0.11 2.3E-06 54.1 8.5 196 585-828 2-229 (237)
140 PF07893 DUF1668: Protein of u 94.8 0.59 1.3E-05 52.5 15.1 124 161-306 74-217 (342)
141 cd07384 MPP_Cdc1_like Saccharo 94.5 0.078 1.7E-06 53.3 6.3 44 616-659 48-101 (171)
142 PF12768 Rax2: Cortical protei 94.2 2.1 4.7E-05 46.4 16.9 126 50-198 2-130 (281)
143 cd08166 MPP_Cdc1_like_1 unchar 94.0 0.061 1.3E-06 54.9 4.4 43 616-658 45-93 (195)
144 cd07380 MPP_CWF19_N Schizosacc 93.9 0.14 3E-06 50.3 6.4 68 584-656 1-68 (150)
145 COG1408 Predicted phosphohydro 93.9 0.13 2.9E-06 55.9 7.0 71 581-659 45-119 (284)
146 COG1407 Predicted ICC-like pho 93.7 0.24 5.3E-06 51.7 8.1 71 580-660 19-112 (235)
147 cd00845 MPP_UshA_N_like Escher 93.0 0.17 3.7E-06 54.1 6.1 66 582-657 2-81 (252)
148 cd00216 PQQ_DH Dehydrogenases 92.9 24 0.00053 41.6 30.0 123 75-197 120-274 (488)
149 COG4186 Predicted phosphoester 92.8 0.46 1E-05 45.9 7.7 41 616-660 48-88 (186)
150 cd08164 MPP_Ted1 Saccharomyces 92.7 0.24 5.3E-06 50.4 6.3 66 588-658 24-111 (193)
151 COG1311 HYS2 Archaeal DNA poly 91.3 3.3 7.2E-05 47.5 13.7 200 581-825 226-460 (481)
152 PF14582 Metallophos_3: Metall 91.1 0.28 6.1E-06 50.5 4.6 73 581-659 6-103 (255)
153 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.5 45 0.00098 39.8 24.7 113 75-197 79-199 (527)
154 PLN02533 probable purple acid 90.4 0.41 9E-06 55.3 5.8 70 581-659 140-212 (427)
155 PRK13684 Ycf48-like protein; P 88.9 44 0.00095 37.4 23.6 182 77-305 111-297 (334)
156 cd07410 MPP_CpdB_N Escherichia 88.8 0.67 1.5E-05 50.3 5.6 21 769-789 208-229 (277)
157 COG0420 SbcD DNA repair exonuc 88.7 1.1 2.4E-05 51.2 7.7 73 582-660 2-90 (390)
158 PF12768 Rax2: Cortical protei 88.4 6.1 0.00013 43.0 12.6 125 113-253 2-130 (281)
159 PF07893 DUF1668: Protein of u 88.2 16 0.00036 40.9 16.3 122 8-158 86-226 (342)
160 PF06874 FBPase_2: Firmicute f 87.0 0.59 1.3E-05 54.9 4.0 57 766-823 507-573 (640)
161 PF08321 PPP5: PPP5 TPR repeat 86.9 2.2 4.7E-05 38.4 6.6 43 527-579 53-95 (95)
162 KOG2055 WD40 repeat protein [G 85.8 35 0.00076 38.9 16.5 181 45-276 224-406 (514)
163 PF08450 SGL: SMP-30/Gluconola 85.1 54 0.0012 34.5 23.6 191 74-304 21-221 (246)
164 cd07378 MPP_ACP5 Homo sapiens 84.7 1.9 4E-05 46.7 6.3 23 767-789 190-212 (277)
165 KOG3662 Cell division control 83.8 2.1 4.5E-05 48.4 6.2 42 616-657 96-143 (410)
166 PF14583 Pectate_lyase22: Olig 83.3 58 0.0013 36.9 17.1 238 45-347 46-303 (386)
167 cd07412 MPP_YhcR_N Bacillus su 83.3 1.7 3.7E-05 47.5 5.3 66 582-657 2-87 (288)
168 cd07408 MPP_SA0022_N Staphyloc 82.2 2.4 5.2E-05 45.5 5.8 65 582-657 2-81 (257)
169 cd07387 MPP_PolD2_C PolD2 (DNA 80.4 53 0.0011 35.3 15.1 176 616-832 45-255 (257)
170 COG1520 FOG: WD40-like repeat 80.4 1.1E+02 0.0023 34.6 27.8 195 74-305 77-279 (370)
171 PRK05137 tolB translocation pr 79.4 1.3E+02 0.0028 34.9 24.6 147 126-304 226-374 (435)
172 cd07411 MPP_SoxB_N Thermus the 79.1 4.1 8.8E-05 43.9 6.3 35 617-657 55-94 (264)
173 PF08268 FBA_3: F-box associat 78.5 32 0.0007 32.4 11.7 86 106-198 2-89 (129)
174 PLN00033 photosystem II stabil 78.3 1.3E+02 0.0029 34.5 24.4 186 77-305 158-365 (398)
175 KOG1378 Purple acid phosphatas 77.7 5.8 0.00013 45.4 7.1 34 768-801 322-355 (452)
176 TIGR03866 PQQ_ABC_repeats PQQ- 75.4 1.1E+02 0.0025 32.2 22.3 121 75-225 11-134 (300)
177 PLN00033 photosystem II stabil 74.7 1.7E+02 0.0036 33.7 26.1 101 77-196 112-214 (398)
178 COG1768 Predicted phosphohydro 73.4 6.3 0.00014 39.2 5.2 40 616-659 46-87 (230)
179 cd00094 HX Hemopexin-like repe 72.6 1.2E+02 0.0025 31.0 17.1 151 104-299 11-178 (194)
180 cd00842 MPP_ASMase acid sphing 72.1 7.4 0.00016 42.6 6.2 46 616-661 71-125 (296)
181 KOG3325 Membrane coat complex 71.0 15 0.00034 35.4 7.0 104 583-729 3-108 (183)
182 COG3855 Fbp Uncharacterized pr 70.1 5.1 0.00011 45.3 4.1 39 616-659 193-231 (648)
183 TIGR03075 PQQ_enz_alc_DH PQQ-d 69.9 2.2E+02 0.0047 34.1 18.3 132 104-252 64-201 (527)
184 COG4880 Secreted protein conta 69.6 60 0.0013 36.8 12.1 91 73-175 404-494 (603)
185 PLN00181 protein SPA1-RELATED; 69.5 3E+02 0.0065 34.7 20.5 22 163-189 587-608 (793)
186 KOG0649 WD40 repeat protein [G 69.4 1.6E+02 0.0034 31.2 16.0 159 84-275 98-263 (325)
187 PRK09419 bifunctional 2',3'-cy 68.9 7.1 0.00015 51.3 6.0 66 582-657 662-735 (1163)
188 PF10282 Lactonase: Lactonase, 68.6 2E+02 0.0043 32.1 19.3 198 75-307 13-235 (345)
189 cd07409 MPP_CD73_N CD73 ecto-5 68.5 11 0.00024 40.9 6.6 24 766-789 193-217 (281)
190 PRK11028 6-phosphogluconolacto 67.7 2E+02 0.0042 31.7 23.4 143 75-244 12-159 (330)
191 PF14870 PSII_BNR: Photosynthe 66.4 2.1E+02 0.0046 31.5 24.5 185 77-306 83-271 (302)
192 KOG2055 WD40 repeat protein [G 66.1 78 0.0017 36.2 12.2 104 166-298 272-376 (514)
193 TIGR02800 propeller_TolB tol-p 63.6 2.6E+02 0.0057 31.7 22.3 146 126-304 214-362 (417)
194 PF04042 DNA_pol_E_B: DNA poly 62.5 12 0.00026 38.6 5.1 72 583-660 1-93 (209)
195 KOG0310 Conserved WD40 repeat- 62.4 3E+02 0.0065 31.9 17.9 66 108-189 121-186 (487)
196 PF14870 PSII_BNR: Photosynthe 62.2 2.5E+02 0.0054 31.0 24.1 242 18-347 6-253 (302)
197 PF08268 FBA_3: F-box associat 61.8 76 0.0016 29.9 10.1 73 176-251 17-89 (129)
198 PRK04792 tolB translocation pr 60.3 3.3E+02 0.0072 31.7 20.3 142 75-243 242-384 (448)
199 cd00200 WD40 WD40 domain, foun 59.9 2E+02 0.0044 29.2 22.8 63 110-189 63-125 (289)
200 cd07406 MPP_CG11883_N Drosophi 59.4 18 0.00038 38.9 5.9 57 591-657 21-82 (257)
201 TIGR03074 PQQ_membr_DH membran 57.9 3.7E+02 0.0079 33.8 17.5 167 106-299 191-388 (764)
202 PRK03629 tolB translocation pr 57.6 3.5E+02 0.0077 31.2 23.9 149 126-305 223-372 (429)
203 PF12217 End_beta_propel: Cata 57.4 1E+02 0.0022 32.8 10.5 99 73-173 215-334 (367)
204 PRK13684 Ycf48-like protein; P 56.9 3.2E+02 0.0069 30.5 23.5 198 18-276 35-233 (334)
205 PF10282 Lactonase: Lactonase, 56.2 3.1E+02 0.0067 30.6 15.5 174 101-305 145-333 (345)
206 PRK04792 tolB translocation pr 56.1 3.8E+02 0.0083 31.2 23.5 146 126-304 242-390 (448)
207 cd00094 HX Hemopexin-like repe 55.0 2.4E+02 0.0053 28.6 17.2 156 158-363 12-177 (194)
208 TIGR03866 PQQ_ABC_repeats PQQ- 54.6 2.8E+02 0.0061 29.1 27.5 93 75-189 53-147 (300)
209 TIGR02800 propeller_TolB tol-p 54.1 3.7E+02 0.0081 30.4 21.5 141 75-242 214-355 (417)
210 KOG0646 WD40 repeat protein [G 53.7 2.3E+02 0.005 32.6 13.2 126 74-227 102-239 (476)
211 KOG2476 Uncharacterized conser 53.3 30 0.00065 39.5 6.3 71 580-655 5-75 (528)
212 cd00200 WD40 WD40 domain, foun 53.2 2.6E+02 0.0056 28.3 22.8 94 75-189 73-167 (289)
213 PF02897 Peptidase_S9_N: Proly 52.9 4E+02 0.0086 30.4 17.5 205 74-304 149-366 (414)
214 TIGR00282 metallophosphoestera 52.8 26 0.00057 37.8 5.8 67 582-658 2-71 (266)
215 PRK04922 tolB translocation pr 52.4 4.2E+02 0.0092 30.5 23.4 146 125-304 227-376 (433)
216 PRK11028 6-phosphogluconolacto 52.2 3.5E+02 0.0077 29.6 24.6 98 75-189 57-158 (330)
217 KOG0643 Translation initiation 51.6 2.8E+02 0.006 29.9 12.6 127 73-227 118-254 (327)
218 cd07405 MPP_UshA_N Escherichia 51.1 22 0.00048 38.8 5.0 19 772-790 200-221 (285)
219 KOG1432 Predicted DNA repair e 50.9 40 0.00087 37.2 6.7 44 616-659 103-148 (379)
220 PF13088 BNR_2: BNR repeat-lik 50.9 3.3E+02 0.0071 28.9 16.8 157 106-273 115-275 (275)
221 PRK01742 tolB translocation pr 50.6 4.5E+02 0.0097 30.3 22.7 139 126-304 228-369 (429)
222 COG1520 FOG: WD40-like repeat 50.1 4.2E+02 0.009 29.8 17.8 156 74-240 162-319 (370)
223 PTZ00235 DNA polymerase epsilo 49.7 53 0.0011 35.7 7.4 76 581-658 28-122 (291)
224 COG4946 Uncharacterized protei 49.5 4.1E+02 0.0088 30.9 14.2 188 124-362 57-257 (668)
225 PRK04922 tolB translocation pr 48.9 4.8E+02 0.01 30.1 21.9 190 75-303 228-418 (433)
226 cd07407 MPP_YHR202W_N Saccharo 48.6 26 0.00056 38.2 5.0 38 616-658 53-97 (282)
227 PF08450 SGL: SMP-30/Gluconola 48.2 3.4E+02 0.0074 28.3 14.0 155 77-251 62-222 (246)
228 COG0737 UshA 5'-nucleotidase/2 47.9 27 0.00058 41.7 5.4 72 580-658 26-115 (517)
229 KOG2863 RNA lariat debranching 46.3 20 0.00044 39.5 3.6 72 582-659 2-89 (456)
230 PRK05137 tolB translocation pr 45.1 5.4E+02 0.012 29.7 21.1 149 124-304 180-330 (435)
231 KOG2321 WD40 repeat protein [G 44.1 1.9E+02 0.0041 34.3 10.9 102 73-189 153-260 (703)
232 KOG0316 Conserved WD40 repeat- 43.7 4.2E+02 0.0092 28.1 15.8 176 75-299 81-260 (307)
233 PF05096 Glu_cyclase_2: Glutam 41.8 1.7E+02 0.0038 31.5 9.7 159 45-252 55-214 (264)
234 KOG0306 WD40-repeat-containing 41.4 5.3E+02 0.011 31.8 14.2 78 75-175 394-477 (888)
235 KOG0643 Translation initiation 41.4 4.9E+02 0.011 28.1 14.5 180 10-229 27-214 (327)
236 PRK00178 tolB translocation pr 40.7 6.1E+02 0.013 29.0 24.7 146 126-305 223-372 (430)
237 KOG0308 Conserved WD40 repeat- 39.6 3.3E+02 0.0071 32.8 12.1 121 109-252 129-265 (735)
238 cd08162 MPP_PhoA_N Synechococc 39.4 51 0.0011 36.5 5.6 69 583-657 3-90 (313)
239 KOG2048 WD40 repeat protein [G 39.1 7.9E+02 0.017 29.9 18.9 90 256-373 425-517 (691)
240 KOG0281 Beta-TrCP (transducin 38.5 1.4E+02 0.0031 32.9 8.4 209 35-349 202-421 (499)
241 cd07382 MPP_DR1281 Deinococcus 38.0 77 0.0017 34.0 6.5 67 582-658 1-70 (255)
242 PRK09420 cpdB bifunctional 2', 38.0 48 0.001 40.7 5.6 69 579-657 24-121 (649)
243 TIGR01390 CycNucDiestase 2',3' 36.2 48 0.001 40.5 5.2 66 582-657 4-98 (626)
244 PRK09419 bifunctional 2',3'-cy 35.2 51 0.0011 43.5 5.5 23 767-789 256-279 (1163)
245 PRK02889 tolB translocation pr 34.6 7.6E+02 0.017 28.4 23.6 147 126-304 220-368 (427)
246 KOG0296 Angio-associated migra 32.0 7.8E+02 0.017 27.7 17.9 122 75-225 86-210 (399)
247 PF06433 Me-amine-dh_H: Methyl 31.7 7.8E+02 0.017 27.6 13.2 107 74-189 16-128 (342)
248 KOG3947 Phosphoesterases [Gene 31.7 64 0.0014 34.6 4.5 65 581-659 62-127 (305)
249 KOG3339 Predicted glycosyltran 30.7 1.9E+02 0.0042 29.3 7.3 89 615-708 40-140 (211)
250 PF09910 DUF2139: Uncharacteri 30.3 7.7E+02 0.017 27.1 12.8 59 119-187 166-230 (339)
251 PF09637 Med18: Med18 protein; 29.8 57 0.0012 34.9 3.9 42 766-810 139-180 (250)
252 PTZ00421 coronin; Provisional 29.6 1E+03 0.022 28.2 17.7 52 165-227 139-190 (493)
253 PF09910 DUF2139: Uncharacteri 29.5 8E+02 0.017 27.0 19.5 159 47-224 47-222 (339)
254 PRK04043 tolB translocation pr 29.3 9.3E+02 0.02 27.8 20.4 192 75-305 213-409 (419)
255 PF02191 OLF: Olfactomedin-lik 29.1 7.3E+02 0.016 26.5 15.2 43 96-144 65-108 (250)
256 PRK05583 ribosomal protein L7A 28.9 56 0.0012 29.9 3.1 69 758-827 13-90 (104)
257 PRK00178 tolB translocation pr 28.6 9.2E+02 0.02 27.5 21.7 102 179-304 223-327 (430)
258 PF02191 OLF: Olfactomedin-lik 28.4 7.5E+02 0.016 26.4 15.5 171 109-304 30-211 (250)
259 PRK04043 tolB translocation pr 28.3 9.7E+02 0.021 27.6 24.0 151 127-306 214-367 (419)
260 KOG0646 WD40 repeat protein [G 28.1 2.5E+02 0.0054 32.4 8.5 59 156-228 85-146 (476)
261 KOG4649 PQQ (pyrrolo-quinoline 27.8 8E+02 0.017 26.5 13.9 59 126-197 33-91 (354)
262 KOG0306 WD40-repeat-containing 27.3 6.7E+02 0.014 30.9 12.1 123 80-227 341-476 (888)
263 PRK11907 bifunctional 2',3'-cy 26.3 95 0.002 39.1 5.4 68 580-657 115-212 (814)
264 COG0634 Hpt Hypoxanthine-guani 26.2 4.1E+02 0.009 26.8 8.7 84 551-638 9-117 (178)
265 PF02239 Cytochrom_D1: Cytochr 25.8 4.7E+02 0.01 29.7 10.6 141 125-298 15-160 (369)
266 TIGR01530 nadN NAD pyrophospha 25.5 1.3E+02 0.0028 36.1 6.3 37 616-657 52-93 (550)
267 PF03178 CPSF_A: CPSF A subuni 25.4 6.8E+02 0.015 27.4 11.7 97 46-168 42-144 (321)
268 PTZ00420 coronin; Provisional 25.3 1.3E+03 0.027 28.0 20.6 61 111-189 139-199 (568)
269 PTZ00421 coronin; Provisional 25.2 1.2E+03 0.026 27.6 20.1 63 110-189 138-200 (493)
270 PF15525 DUF4652: Domain of un 25.1 7.5E+02 0.016 25.3 11.0 62 73-137 86-151 (200)
271 PF13258 DUF4049: Domain of un 24.3 1.3E+02 0.0027 31.6 4.9 60 645-713 127-187 (318)
272 PRK09558 ushA bifunctional UDP 23.5 1E+02 0.0022 37.0 5.0 19 771-789 235-256 (551)
273 TIGR00282 metallophosphoestera 23.5 93 0.002 33.6 4.1 53 616-674 2-55 (266)
274 PTZ00422 glideosome-associated 23.0 1.4E+02 0.003 34.2 5.5 21 769-789 239-259 (394)
275 PF02897 Peptidase_S9_N: Proly 22.8 1.1E+03 0.025 26.6 17.7 191 125-361 149-357 (414)
276 KOG0310 Conserved WD40 repeat- 21.8 1.3E+03 0.028 26.9 13.7 128 45-226 165-300 (487)
277 PF02875 Mur_ligase_C: Mur lig 21.1 3.6E+02 0.0077 23.4 6.8 70 581-655 12-82 (91)
278 PF13088 BNR_2: BNR repeat-lik 20.8 9.9E+02 0.021 25.1 19.2 212 84-308 29-254 (275)
279 PF05567 Neisseria_PilC: Neiss 20.5 1.2E+03 0.026 26.0 14.0 56 125-188 180-240 (335)
280 PRK03629 tolB translocation pr 20.1 1.3E+03 0.029 26.4 20.8 191 75-304 223-414 (429)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-79 Score=599.91 Aligned_cols=284 Identities=41% Similarity=0.724 Sum_probs=272.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.|.+.. .+.+.++..||.++.+||.+|++++.++.|++|||||||||.||+.+|+..|.++..
T Consensus 3 ldr~ie~L~~~~----------li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t- 71 (303)
T KOG0372|consen 3 LDRQIEQLRRCE----------LIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPET- 71 (303)
T ss_pred HHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCC-
Confidence 478899998873 689999999999999999999999999999999999999999999999999988877
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|+|||||||||.+|+|++.||++||++||++|+|||||||++.++..|||++||++||+. ..+|+.+.++|
T Consensus 72 -----~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~---~~vWr~c~eiF 143 (303)
T KOG0372|consen 72 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGS---ANVWRYCTEIF 143 (303)
T ss_pred -----ceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCC---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999985 47999999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|+|+++|||||||++|++.++|||+.+.|-.++|.++ .++|||||||.+ ..||.-++||+| +.||.+++
T Consensus 144 dyL~l~aiid~kifCVHGGlSP~i~~lDqIr~lDR~~Eiph~g-~m~DllWSDPee---~~g~~~SPRGaG-ylFG~dvv 218 (303)
T KOG0372|consen 144 DYLSLAAIIDGKIFCVHGGLSPSIQTLDQIRVLDRKQEVPHDG-AMCDLLWSDPEE---GPGWGLSPRGAG-YLFGEDVV 218 (303)
T ss_pred HhhhHhheecCcEEEEcCCCCcchhhHHHHHHhhccccCCCCC-cchheeccCccc---CCCcccCCCCcc-ccccHHHH
Confidence 9999999999999999999999999999999999999999887 899999999987 369999999999 78999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 838 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 838 (885)
++||+.||+++|+||||.|++||++.++++|+|||||||||++++|.||||.++++..-.+++|...+
T Consensus 219 ~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~ 286 (303)
T KOG0372|consen 219 ESFLEANGLSLICRAHQLVMEGYKWHFDEKVVTVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAP 286 (303)
T ss_pred HHHHHhCChHHHHHHHHHHHhhHHHhcCCceEEEecCCchhhhcCChHHheeeccccCcceEeeecch
Confidence 99999999999999999999999999999999999999999999999999999999999999997654
No 2
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.1e-73 Score=617.46 Aligned_cols=295 Identities=52% Similarity=0.931 Sum_probs=276.5
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhC-CCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYG-FPSTA 609 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g-~~~~~ 609 (885)
.+++|..++..............|+++||.+||..+.++|..+|+++++++||+|||||||||.||+++|+..| +|++.
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~~~~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~ 88 (331)
T KOG0374|consen 9 LDELIRKLLSVGNKKTEKKRQVPLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQ 88 (331)
T ss_pred HHHHHHHHhhccccCCCcccceeccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcc
Confidence 56777777766543333333456999999999999999999999999999999999999999999999999999 89877
Q ss_pred CCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhh
Q 002740 610 GDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQL 689 (885)
Q Consensus 610 ~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~ 689 (885)
+|||||||||||++|+|++.||+++|++||+++++||||||++.+|..|||++||.++|+. ..+|+.|+++
T Consensus 89 ------~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~---~~~w~~F~~~ 159 (331)
T KOG0374|consen 89 ------NYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGE---IKLWKAFNDA 159 (331)
T ss_pred ------cEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceeeeHHHHHHhcch---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964 5799999999
Q ss_pred ccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHH
Q 002740 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDR 769 (885)
Q Consensus 690 f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~ 769 (885)
|++||++|+|+++|+|+||||+|.+.++++|+.|.||.+.++.+ +++|||||||+. .+.||.+|.||.+ +.||+++
T Consensus 160 f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i~~i~rp~~~~~~g-ll~DLlWsdp~~--~~~g~~~n~Rg~s-~~fg~~~ 235 (331)
T KOG0374|consen 160 FNCLPLAALIDGKILCMHGGLSPHLKSLDQIRAIPRPTDSPDKG-LLCDLLWSDPDD--DVPGWEENDRGVS-FTFGPAV 235 (331)
T ss_pred HhhCchhheecceEEEecCCCChhhcChHHHhhccCCcCCCccc-eeeeeeecCCCC--CCCCcccCCCcee-eEecHHH
Confidence 99999999999999999999999999999999999998888776 999999999986 3789999999999 8999999
Q ss_pred HHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCC
Q 002740 770 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLP 838 (885)
Q Consensus 770 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~ 838 (885)
+++||+++++++||||||+|+|||++|++++++||||||+|||.++|+||+|.|++++.+++++++|..
T Consensus 236 v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~~ 304 (331)
T KOG0374|consen 236 VEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPEG 304 (331)
T ss_pred HHHHHHHhCcceEEEcCccccccceEecCceEEEEecCchhccccCCceEEEEECCCCeEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999953
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-71 Score=538.47 Aligned_cols=286 Identities=38% Similarity=0.707 Sum_probs=270.5
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
.++.|+...+.+ .|++.|+..||+.++++|..|.+++.++.|+.|||||||||.||+++|+..|-.|+.
T Consensus 6 ~d~wi~~vk~ck----------yLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~t- 74 (306)
T KOG0373|consen 6 LDQWIETVKKCK----------YLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDT- 74 (306)
T ss_pred HHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCc-
Confidence 356666665553 689999999999999999999999999999999999999999999999999987765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|+|+|||||||.+|+|++.+|+.||.+||.+|.|||||||.+.+...|||++||..|||.. ..|+.+.++|
T Consensus 75 -----nYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGna---n~wkycckVF 146 (306)
T KOG0373|consen 75 -----NYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNA---NVWKYCCKVF 146 (306)
T ss_pred -----ceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCc---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999864 7999999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
+.|+++|+|+++|||||||+||++.++|||+.|.|..++|.++ .+|||+||||++ ++.|.-++||+| +.||.+++
T Consensus 147 D~LtlaAiID~~vLCVHGGLSPdirtlDqir~i~R~qEiPh~G-~fcDlmWSDPed---ve~W~vSpRGAG-wlFGskVt 221 (306)
T KOG0373|consen 147 DFLTLAAIIDEKVLCVHGGLSPDIRTLDQIRLIERNQEIPHEG-PFCDLMWSDPED---VETWAVSPRGAG-WLFGSKVT 221 (306)
T ss_pred hhhhHHHHhcCcEEEEcCCCCccceeHHHHHhHHhhccCCCCC-CccceeccChhh---hhhheeCCCCcc-eeechhhh
Confidence 9999999999999999999999999999999999999999988 799999999985 789999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCe-EEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQ-LITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~-~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
.+|+..|+|++|+|+||.|++||++.+++| |+|||||||||.+++|.|+||.++.+++-++|+|..+|..
T Consensus 222 ~eF~~iN~L~LicRaHQLV~EG~KymF~eK~lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 222 TEFNHINNLNLICRAHQLVQEGFKYMFDEKGLVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred HHHHhccchHHHHhHHHHHHhhHHhccCCCCEEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 999999999999999999999999999888 9999999999999999999999999999999999876543
No 4
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=3.5e-69 Score=580.88 Aligned_cols=294 Identities=47% Similarity=0.860 Sum_probs=275.0
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.+.+++. ....|++++|.+||++|+++|++||+++++.+|++||||||||+.+|.++|+..++++.+
T Consensus 11 ~~~~i~~~~~~~~~~~~--~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~- 87 (320)
T PTZ00480 11 VDNIIERLLSVRGSKPG--KNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPES- 87 (320)
T ss_pred HHHHHHHHHhccccCcc--ccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcc-
Confidence 68899999987765532 224689999999999999999999999999999999999999999999999999998876
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|+++|+.+|.++++||||||...++..|||..||..+|+ ..+|..++++|
T Consensus 88 -----~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~----~~l~~~~~~~F 158 (320)
T PTZ00480 88 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT----IKLWKTFTDCF 158 (320)
T ss_pred -----eEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999994 46999999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||+||+|++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 159 ~~LPlaAiI~~~i~cvHGGI~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWSDP~~--~~~~~~~s~RG~g-~~FG~~~~ 234 (320)
T PTZ00480 159 NCLPVAALIDEKILCMHGGLSPELSNLEQIRRIMRPTDVPDTG-LLCDLLWSDPDK--DVQGWADNERGVS-YVFSQEIV 234 (320)
T ss_pred HhccHhheecCcEEEEcCCcCcccCCHHHHhcccCCCCCCccc-hhhheeecCccc--ccCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887655 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++.+.++.|.|.+..
T Consensus 235 ~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~iTvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 235 QVFLKKHELDLICRAHQVVEDGYEFFSKRQLVTLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred HHHHHhCCCcEEEEcCccccCceEEeCCCcEEEEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999876543
No 5
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=2.1e-68 Score=575.88 Aligned_cols=285 Identities=33% Similarity=0.587 Sum_probs=256.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEecCCCCHHHHHHHHHHhCC
Q 002740 530 LHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGF 605 (885)
Q Consensus 530 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~----~i~vvGDiHG~~~~L~~il~~~g~ 605 (885)
.++++|+.+++.. .|+++++.+||++|+++|++||+++++.. |++|||||||||.+|+++|+..|+
T Consensus 6 ~~~~~i~~~~~~~----------~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~ 75 (321)
T cd07420 6 HIDALIEAFKEKQ----------LLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGL 75 (321)
T ss_pred HHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCC
Confidence 3688999998753 47899999999999999999999999986 899999999999999999999998
Q ss_pred CCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhh
Q 002740 606 PSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTR 685 (885)
Q Consensus 606 ~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~ 685 (885)
|+... +|||||||||||++|+||+.+|++||++||++|++||||||.+.++..|||..||..+|+.. ...+|+.
T Consensus 76 ~~~~~-----~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~-~~~l~~~ 149 (321)
T cd07420 76 PSPEN-----PYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLH-GKKILRL 149 (321)
T ss_pred CCccc-----eEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCcc-HHHHHHH
Confidence 86532 79999999999999999999999999999999999999999999999999999999999753 4679999
Q ss_pred hhhhccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCccc-----CC---------------------CCcchhcc
Q 002740 686 FNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM-----DA---------------------GSIILMDL 739 (885)
Q Consensus 686 ~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~-----~~---------------------~~~~~~dl 739 (885)
++++|++||+||+|++++|||||||++ ..++++|+.|+|+... +. ...+++|+
T Consensus 150 ~~~~F~~LPlaaii~~~i~cvHGGi~~-~~~l~~i~~i~r~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 228 (321)
T cd07420 150 LEDVFSWLPLATIIDNKILVVHGGISD-STDLDLLDKIDRHKYVSVLRPPLRKGMEELTGEEEDPSEPLDKTEWRQILDI 228 (321)
T ss_pred HHHHHHhCCceEEEcCCEEEEeCCCCC-ccCHHHHHhhhccccccccCCCccccccccccccccccccccccccchhhee
Confidence 999999999999999999999999997 5799999999884211 11 01367899
Q ss_pred ccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEE
Q 002740 740 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA 819 (885)
Q Consensus 740 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga 819 (885)
|||||.+. ...|.+++||.| +.||++++++||++|++++||||||++++||+++++++|||||||||||+..+|+||
T Consensus 229 LWSDP~~~--~~~~~~~~RG~g-~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N~ga 305 (321)
T cd07420 229 LWSDPKAQ--KGCKPNTFRGGG-CYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSNRGA 305 (321)
T ss_pred eecCCccC--CCCCccCCCCCc-cccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCccEE
Confidence 99999853 233666789999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCcceEEeEEe
Q 002740 820 ILVVGRGLVVVPKLI 834 (885)
Q Consensus 820 ~l~~~~~~~~~~~~~ 834 (885)
+|.+++++.+.++.|
T Consensus 306 vl~i~~~~~~~f~~~ 320 (321)
T cd07420 306 YIKLGPDLTPHFVQY 320 (321)
T ss_pred EEEECCCCceeEEEe
Confidence 999999988877665
No 6
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=5.5e-68 Score=577.38 Aligned_cols=303 Identities=74% Similarity=1.267 Sum_probs=279.3
Q ss_pred HHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCC--CC
Q 002740 534 IISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTA--GD 611 (885)
Q Consensus 534 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~--~~ 611 (885)
+|++|++|+.|+++...++.|+++++.+||++|+++|++||+++++.+|++|||||||||++|+++|+.+++++.. ++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~ 80 (311)
T cd07419 1 IITHLLKPRIWKPPTDRRFFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGD 80 (311)
T ss_pred ChHHhcCcccccCccccccCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCC
Confidence 4788999999999888888999999999999999999999999999999999999999999999999999988652 12
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCC--cchhhhhhhhhh
Q 002740 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGEN--DGIWAWTRFNQL 689 (885)
Q Consensus 612 ~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~--~~~~~~~~~~~~ 689 (885)
....+|||||||||||++|+|||.+|++||+.+|.++++||||||.+.++..|||..||..+|+.. ++..+|..++++
T Consensus 81 ~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~ 160 (311)
T cd07419 81 IEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRL 160 (311)
T ss_pred CcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHH
Confidence 222379999999999999999999999999999999999999999999999999999999999762 335699999999
Q ss_pred ccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCC---CCCce-EEe
Q 002740 690 FNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNA---RGPGL-VTF 765 (885)
Q Consensus 690 f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~---rg~~~-~~f 765 (885)
|++||++++++++++||||||+|.+.++++|+.+.||...+....+++|+|||||...+...+|.+|+ ||.|. +.|
T Consensus 161 f~~LPl~avi~~~~l~vHgGi~p~~~~l~~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~f 240 (311)
T cd07419 161 FEWLPLAAIIEDKILCMHGGIGRSINHVSEIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKF 240 (311)
T ss_pred HHhCchhheecccEEEEccCCCCCCCcHHHHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeE
Confidence 99999999999999999999999999999999999998544444589999999999765567888887 99995 799
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002740 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
|++++++||++||+++||||||++++||+++++++|||||||||||+.++|+||+|++++++.++|++|+|
T Consensus 241 g~~~~~~Fl~~n~l~~iiRgHe~~~~G~~~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 241 GPDRVHRFLEENDLQMIIRAHECVMDGFERFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred CHHHHHHHHHHCCCeEEEEechhhhCCeEEeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.1e-67 Score=567.10 Aligned_cols=291 Identities=41% Similarity=0.778 Sum_probs=270.8
Q ss_pred hHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCC
Q 002740 529 GLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST 608 (885)
Q Consensus 529 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~ 608 (885)
++++++|.++++...+. ......++.++|.+||++|+++|++||+++++.+|++||||||||+.+|+++|+..++++.
T Consensus 2 ~~~~~~i~~~~~~~~~~--~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~ 79 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNR--TQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPY 79 (294)
T ss_pred chHHHHHHHHHhcccCC--CccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCc
Confidence 35688899999865443 2233478999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhh
Q 002740 609 AGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQ 688 (885)
Q Consensus 609 ~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~ 688 (885)
+ +|||||||||||++|+||+.+|+++|+.+|.++++||||||.+.++..|||..|+..+|+ ..+|..+++
T Consensus 80 ~------~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~ 149 (294)
T PTZ00244 80 S------NYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN----IKLFKAFTD 149 (294)
T ss_pred c------cEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh----HHHHHHHHH
Confidence 6 899999999999999999999999999999999999999999999999999999999995 469999999
Q ss_pred hccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHH
Q 002740 689 LFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPD 768 (885)
Q Consensus 689 ~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~ 768 (885)
+|+.||++|++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++
T Consensus 150 ~f~~lPlaaii~~~il~vHgGi~p~~~~l~~i~~i~rp~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~ 225 (294)
T PTZ00244 150 VFNTMPVCCVISEKIICMHGGLSPDLTSLASVNEIERPCDVPDRG-ILCDLLWADPED--EVRGFLESDRGVS-YLFGED 225 (294)
T ss_pred HHHhCchheEecCeeEEEcCCCCchhhHHHHhhhhccccCCCccc-hhheeeecCccc--ccCCCCcCCCCCc-cccCHH
Confidence 999999999999999999999999999999999999999887654 899999999985 3578999999999 789999
Q ss_pred HHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEec
Q 002740 769 RVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIH 835 (885)
Q Consensus 769 ~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~ 835 (885)
++++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|.
T Consensus 226 ~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~ 292 (294)
T PTZ00244 226 IVNDFLDMVDMDLIVRAHQVMERGYGFFASRQLVTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIP 292 (294)
T ss_pred HHHHHHHHcCCcEEEEcCccccCceEEcCCCeEEEEeCCccccCCCCceEEEEEECCCCcEeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999999888764
No 8
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=1.6e-67 Score=564.79 Aligned_cols=283 Identities=42% Similarity=0.754 Sum_probs=267.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.. .|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~- 70 (285)
T cd07415 2 LDKWIEQLKKCE----------LLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDT- 70 (285)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCC-
Confidence 467888888643 478999999999999999999999999999999999999999999999999988766
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..|||..||..+|+. ..+|+.++++|
T Consensus 71 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~---~~l~~~~~~~f 142 (285)
T cd07415 71 -----NYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGN---ANVWKYCTDLF 142 (285)
T ss_pred -----eEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCc---hHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999964 36999999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|++++++|||||||+|.+.++++|+.|+||.+++..+ +++|+|||||.+. .+|.+|+||.| +.||++++
T Consensus 143 ~~lPlaaii~~~i~cvHgGi~p~~~~~~~i~~i~r~~~~~~~~-~~~dllWsDP~~~---~~~~~~~Rg~g-~~fg~~~~ 217 (285)
T cd07415 143 DYLPLAALIDNQIFCVHGGLSPSIDTLDQIRAIDRFQEVPHEG-PMCDLLWSDPDDI---EGWGISPRGAG-YLFGQDVV 217 (285)
T ss_pred HHhHHHhEeCCeEEEEcCCCCCCcccHHHhhcccCCCCCCCCC-CccceEecCCCcc---CCCCcCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887665 7899999999863 68999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPL 837 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~ 837 (885)
++||++||+++||||||++++||+++++++|||||||||||+..+|+||+|.|++++++.++.|.|.
T Consensus 218 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~ 284 (285)
T cd07415 218 EEFNHNNGLTLICRAHQLVMEGYQWMFDDKLVTVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAA 284 (285)
T ss_pred HHHHHHCCCeEEEEcCccccceEEEecCCcEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 9
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.7e-67 Score=566.81 Aligned_cols=290 Identities=49% Similarity=0.900 Sum_probs=270.9
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.+.++. .....|+++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..++++.+
T Consensus 2 ~~~~i~~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~- 78 (293)
T cd07414 2 IDSIIERLLEVRGSRP--GKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPES- 78 (293)
T ss_pred HHHHHHHHHhccccCC--cccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcc-
Confidence 4678888888765543 2334689999999999999999999999999999999999999999999999999998776
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|+++|+.+|.++++||||||.+.++..|||..|+..+|+ ..+|..++++|
T Consensus 79 -----~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~----~~l~~~~~~~f 149 (293)
T cd07414 79 -----NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN----IKLWKTFTDCF 149 (293)
T ss_pred -----eEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh----HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999984 46999999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|++++++||||||++|.+.++++|+.++||.+.+..+ +++|+|||||.. ...+|.+|+||.| +.||++++
T Consensus 150 ~~lPlaa~i~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~ 225 (293)
T cd07414 150 NCLPVAAIIDEKIFCMHGGLSPDLQSMEQIRRIMRPTDVPDQG-LLCDLLWSDPDK--DVQGWGENDRGVS-FTFGKDVV 225 (293)
T ss_pred HHhHHHHhhCCcEEEEccCCCcccCcHHHHhcccCCCCCCchh-hHhhhhccCccc--ccCCCccCCCCcc-eecCHHHH
Confidence 9999999999999999999999999999999999999887655 899999999986 3578999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
++||++||+++||||||++++||+++++++||||||||||||..+|+||+|.|++++.+.++.|+|
T Consensus 226 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~ 291 (293)
T cd07414 226 AKFLNKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKP 291 (293)
T ss_pred HHHHHHcCCeEEEECCccccCeEEEeCCCcEEEEecCCcccCCCCceEEEEEECCCCcEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999998876
No 10
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=3.8e-67 Score=564.34 Aligned_cols=285 Identities=41% Similarity=0.769 Sum_probs=266.2
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++++|+.+++.. .|+++++.+||++|+++|++||+++++.+|++||||||||+.+|+++|+..+.++..
T Consensus 3 ~~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~- 71 (303)
T PTZ00239 3 IDRHIATLLNGG----------CLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNA- 71 (303)
T ss_pred HHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc-
Confidence 477888887642 478999999999999999999999999999999999999999999999999987765
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|||||||||||++++||+.+|+++|+.+|.++++||||||.+.++..|||..|+..+|+.. .+|+.++++|
T Consensus 72 -----~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~---~~~~~~~~~f 143 (303)
T PTZ00239 72 -----NYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNS---NPWRLFMDVF 143 (303)
T ss_pred -----eEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcCh---hHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999753 5899999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
++||++|++++++|||||||+|.+.++++|+.++||.+++..+ .++|+|||||.+ ..+|.+|+||.| +.||++++
T Consensus 144 ~~LPlaaii~~~i~cvHgGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~~~Rg~g-~~fg~~~~ 218 (303)
T PTZ00239 144 DCLPLAALIEGQILCVHGGLSPDMRTIDQIRTIDRKIEIPHEG-PFCDLMWSDPEE---VEYWAVNSRGAG-YLFGAKVT 218 (303)
T ss_pred HhCchheEEcCeEEEEcCccCcccccHhhhccccCCCCCCCCC-CceeeEecCccc---cCCCccCCCCCc-cccCHHHH
Confidence 9999999999999999999999999999999999999887766 789999999985 468999999999 68999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecC-CeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCCC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQ-GQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPP 839 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~-~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~ 839 (885)
++||++||+++||||||++++||+++++ ++|||||||||||+..+|+||+|.+++++.+.++.|.|.+.
T Consensus 219 ~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~ 288 (303)
T PTZ00239 219 KEFCRLNDLTLICRAHQLVMEGYKYWFPDQNLVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPE 288 (303)
T ss_pred HHHHHHCCCcEEEEcChhhccceEEEeCCCeEEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCc
Confidence 9999999999999999999999998765 45999999999999999999999999999999999988754
No 11
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=6.7e-66 Score=558.61 Aligned_cols=291 Identities=35% Similarity=0.639 Sum_probs=268.6
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEecCCCCHHHHHHHHHH
Q 002740 527 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDE 602 (885)
Q Consensus 527 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~----i~vvGDiHG~~~~L~~il~~ 602 (885)
+..+++++++.+.+.+ .|+.+++.+||++|+++|++||+++++..| ++|||||||||.+|+++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~----------~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~ 81 (316)
T cd07417 12 TLEFVKEMIEWFKDQK----------KLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFEL 81 (316)
T ss_pred CHHHHHHHHHHHHccC----------CCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHh
Confidence 4567889999998753 478999999999999999999999999877 99999999999999999999
Q ss_pred hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhh
Q 002740 603 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 682 (885)
Q Consensus 603 ~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 682 (885)
.|+++..+ +|||||||||||++|+|||.+|++||+.+|.++++||||||.+.++..|||..|+..+|+ ..+
T Consensus 82 ~g~~~~~~-----~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~----~~l 152 (316)
T cd07417 82 NGLPSETN-----PYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN----EQM 152 (316)
T ss_pred cCCCCccC-----eEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc----HHH
Confidence 99886542 799999999999999999999999999999999999999999999999999999999885 468
Q ss_pred hhhhhhhccCCceEEEEeCeEEEecCCC-CCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCc
Q 002740 683 WTRFNQLFNCLPLAALIEKKIICMHGGI-GRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG 761 (885)
Q Consensus 683 ~~~~~~~f~~LP~~~~i~~~il~vHgGi-~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~ 761 (885)
|+.+.++|++||+++++++++||||||| ++.+.++++|++++||.+.+..+ +++|+|||||.+ ..+|.+|+||.|
T Consensus 153 ~~~~~~~f~~LPlaaii~~~~~~vHgGi~~~~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~---~~~~~~s~Rg~g 228 (316)
T cd07417 153 FDLFSEVFNWLPLAHLINGKVLVVHGGLFSDDGVTLDDIRKIDRFRQPPDSG-LMCELLWSDPQP---QPGRSPSKRGVG 228 (316)
T ss_pred HHHHHHHHHhchHhheeCCeEEEEccccccCCCccHHHhhcccCCCCCCccc-cceeeeecCCCC---CCCCCccCCCCc
Confidence 9999999999999999999999999999 56789999999999998776554 899999999986 358999999999
Q ss_pred eEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcC-cceEEeEEecCCCCC
Q 002740 762 LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR-GLVVVPKLIHPLPPP 840 (885)
Q Consensus 762 ~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~-~~~~~~~~~~~~~~~ 840 (885)
+.||++++++||++||+++||||||++++||+++++++|+|||||||||+..+|+||+|.|++ ++.+.++.|.|.+..
T Consensus 229 -~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 229 -CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCITVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred -eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEEEEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999 899999999877654
Q ss_pred C
Q 002740 841 L 841 (885)
Q Consensus 841 ~ 841 (885)
.
T Consensus 308 ~ 308 (316)
T cd07417 308 N 308 (316)
T ss_pred C
Confidence 3
No 12
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=3.8e-65 Score=552.30 Aligned_cols=286 Identities=37% Similarity=0.649 Sum_probs=261.0
Q ss_pred HHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCC
Q 002740 532 KKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGD 611 (885)
Q Consensus 532 ~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~ 611 (885)
+-+++.+.+.. .|+++++.+||++|+++|++||+++++.+|++||||||||+.+|.++|+..+.++.+
T Consensus 4 ~~~~~~~~~~~----------~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~-- 71 (305)
T cd07416 4 DVLKAHFMREG----------RLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANT-- 71 (305)
T ss_pred HHHHHHHHcCC----------CCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCc--
Confidence 45666666543 478999999999999999999999999999999999999999999999999988766
Q ss_pred cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhcc
Q 002740 612 ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFN 691 (885)
Q Consensus 612 ~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~ 691 (885)
+|||||||||||++|+||+.+|++||+.+|.++++||||||.+.++..|||..|+..+|+ ..+|..++++|+
T Consensus 72 ----~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y~----~~l~~~~~~~f~ 143 (305)
T cd07416 72 ----RYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYS----ERVYDACMEAFD 143 (305)
T ss_pred ----eEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhcc----HHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999884 468999999999
Q ss_pred CCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCC----CCcccC-CCCCceEEeC
Q 002740 692 CLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSI----EGLRPN-ARGPGLVTFG 766 (885)
Q Consensus 692 ~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~----~~~~~n-~rg~~~~~fg 766 (885)
.||+++++++++|||||||+|.+.++++|+.++||.+.+..+ +++|+|||||...+.. .+|.+| +||.| +.||
T Consensus 144 ~LPlaaii~~~i~~vHGGi~p~~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g-~~fG 221 (305)
T cd07416 144 CLPLAALMNQQFLCVHGGLSPELKTLDDIRKLDRFREPPAFG-PMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCS-YFYS 221 (305)
T ss_pred hccceeEEcCCEEEEcCCCCcccccHHHhcccCCCCCCCCCC-cceeeeecCcccccccccccccccccCCCCCc-eecC
Confidence 999999999999999999999999999999999998877665 8899999999864321 358776 89999 7999
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCC------eEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002740 767 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 767 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
++++++||++||+++||||||++++||++++++ +|||||||||||+..+|+||+|.++++. +.++.|.+.|-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~~ 300 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 300 (305)
T ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCCC
Confidence 999999999999999999999999999998887 9999999999999999999999999985 678888776543
No 13
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=5.8e-65 Score=543.75 Aligned_cols=269 Identities=48% Similarity=0.880 Sum_probs=255.5
Q ss_pred cCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHH
Q 002740 554 LDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET 633 (885)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~ev 633 (885)
++++++.+||++|+++|++||+++++..|++||||||||+.+|+++|+..+.++.+ +|||||||||||++++||
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~------~~vfLGD~VDrG~~s~e~ 74 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDT------NYVFLGDYVDRGPFSIEV 74 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCc------eEEEeCCccCCCCChHHH
Confidence 35789999999999999999999999999999999999999999999999987766 899999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCCC
Q 002740 634 ITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRS 713 (885)
Q Consensus 634 l~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~ 713 (885)
+.+|++||+.+|.++++||||||.+.++..|||..|+..+|+ ..+|+.+.++|++||+++++++++|||||||+|.
T Consensus 75 l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~----~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~ 150 (271)
T smart00156 75 ILLLFALKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG----EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPD 150 (271)
T ss_pred HHHHHHHHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC----HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCc
Confidence 999999999999999999999999999999999999999985 4699999999999999999999999999999999
Q ss_pred CcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccce
Q 002740 714 IHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGF 793 (885)
Q Consensus 714 ~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~ 793 (885)
+.++++|+.++||.+.+... +++|+|||||.. ...+|.+|+||.| +.||++++++||++||+++||||||++++||
T Consensus 151 ~~~l~~i~~i~r~~~~~~~~-~~~dllWsDP~~--~~~~~~~~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~ 226 (271)
T smart00156 151 LTTLDDIRKLKRPQEPPDEG-LLIDLLWSDPDQ--PVDGFQPSIRGAS-YYFGPDAVDEFLKKNNLKLIIRAHQVVDDGY 226 (271)
T ss_pred cCCHHHHhcccCCCCCCchh-hhhheeecCCCc--ccCCCccCCCCCc-cccCHHHHHHHHHHCCCeEEEecCcccCCcE
Confidence 99999999999998876654 899999999974 3579999999999 6899999999999999999999999999999
Q ss_pred EEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002740 794 ERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 794 ~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
+++++++|||||||||||+..+|+||+|.+++++.+.++.+.|
T Consensus 227 ~~~~~~~~~TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~ 269 (271)
T smart00156 227 EFFHDRKLVTIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKP 269 (271)
T ss_pred EEecCCcEEEEECCcccccCCCceEEEEEECCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999988876
No 14
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=1.5e-62 Score=536.82 Aligned_cols=299 Identities=33% Similarity=0.586 Sum_probs=257.5
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEecCCCCHHHHHHHHHH
Q 002740 527 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDE 602 (885)
Q Consensus 527 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~----~~i~vvGDiHG~~~~L~~il~~ 602 (885)
+....+.+|..+.....--++......|+.+++.+||++|+++|++||+++++. .|++||||||||+.+|+++|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 344567778777543211123333456899999999999999999999999998 8999999999999999999999
Q ss_pred hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhh
Q 002740 603 YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWA 682 (885)
Q Consensus 603 ~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~ 682 (885)
.|+++.+. +|||||||||||++|+|||.+|++||+.+|.+|++||||||.+.++..|||..|+..+|+.. +..+
T Consensus 88 ~g~~~~~~-----~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~-~~~l 161 (377)
T cd07418 88 AGFPDQNR-----FYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDK-GKHV 161 (377)
T ss_pred hCCCCCCc-----eEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCch-HHHH
Confidence 99886542 69999999999999999999999999999999999999999999999999999999999754 4579
Q ss_pred hhhhhhhccCCceEEEEeCeEEEecCCC---------------------------CCCCcCHHHhhcccCCc-ccCCCC-
Q 002740 683 WTRFNQLFNCLPLAALIEKKIICMHGGI---------------------------GRSIHSVEQIEKLERPI-TMDAGS- 733 (885)
Q Consensus 683 ~~~~~~~f~~LP~~~~i~~~il~vHgGi---------------------------~~~~~~~~~i~~~~rp~-~~~~~~- 733 (885)
|++++++|++||+++++++++||||||| +|.+.++++|+.++||. +.+..+
T Consensus 162 ~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~~~~~~~~~~ 241 (377)
T cd07418 162 YRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRSVLDPPGEGS 241 (377)
T ss_pred HHHHHHHHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCCCCCCCCCCc
Confidence 9999999999999999999999999999 45578999999999985 444332
Q ss_pred -cchhccccCCCCCCCCCCCcccC-CCCCceEEeCHHHHHHHHHHcCCeEEEEeccc------------cccceEEecC-
Q 002740 734 -IILMDLLWSDPTENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHEC------------VMDGFERFAQ- 798 (885)
Q Consensus 734 -~~~~dllWsdP~~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~------------~~~G~~~~~~- 798 (885)
.+++|||||||.. ..+|.+| .||.| +.||++++++||++|++++||||||+ +++||+++++
T Consensus 242 ~~i~~dlLWSDP~~---~~g~~~~~~RG~g-~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~~~v~~Gy~~~~~~ 317 (377)
T cd07418 242 NLIPGDVLWSDPSL---TPGLSPNKQRGIG-LLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGLAGMNKGYTVDHDV 317 (377)
T ss_pred cccceeeEeeCCcc---CCCCCccCCCCCc-cccCHHHHHHHHHHcCCcEEEECCCCcccccccccchhhhCceEEeccC
Confidence 2578999999986 3577777 79999 68999999999999999999999996 6899999887
Q ss_pred --CeEEEEeeccccc------CCCCCeEEEEEEcCcc--eEEeEEec
Q 002740 799 --GQLITLFSATNYC------GTANNAGAILVVGRGL--VVVPKLIH 835 (885)
Q Consensus 799 --~~~itvfSa~~y~------~~~~n~ga~l~~~~~~--~~~~~~~~ 835 (885)
++||||||||||| +..+|+||+++++.+- ...++.|.
T Consensus 318 ~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~ 364 (377)
T cd07418 318 ESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFE 364 (377)
T ss_pred CCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEee
Confidence 9999999999999 5789999999996643 44555554
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-63 Score=491.43 Aligned_cols=286 Identities=41% Similarity=0.722 Sum_probs=270.4
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAG 610 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~ 610 (885)
++..|..|.+.+ .+++.++..||+.|+++|.+|.++..++.|++||||+||||+||+++|+..|..++.
T Consensus 20 vd~~ie~L~~ck----------~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdt- 88 (319)
T KOG0371|consen 20 VDPWIEQLYKCK----------PLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDT- 88 (319)
T ss_pred cccchHHHHhcC----------CCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCc-
Confidence 466788887764 578899999999999999999999999999999999999999999999888887766
Q ss_pred CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhc
Q 002740 611 DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLF 690 (885)
Q Consensus 611 ~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f 690 (885)
+|+|+|||||||++|+|++.+|.++|++||++|-+||||||.+.+...|||++||.+|||.. .+|+.|.+.|
T Consensus 89 -----nylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~a---nvw~~Ftdlf 160 (319)
T KOG0371|consen 89 -----NYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNA---NVWKYFTDLF 160 (319)
T ss_pred -----ceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccc---cchHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999864 6999999999
Q ss_pred cCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHH
Q 002740 691 NCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRV 770 (885)
Q Consensus 691 ~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~ 770 (885)
+++|+.|+|+++|||+|||++|++.+++.++.+.|-.++|.++ .+||||||||++ ..||..++||+| +.||.+..
T Consensus 161 dy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg-pmcDlLwsdpdd---r~gwg~sprgag-~tfg~di~ 235 (319)
T KOG0371|consen 161 DYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG-PMCDLLWSDPDD---RCGWGISPRGAG-YTFGQDIS 235 (319)
T ss_pred hccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC-ChhheeccCccc---CCCCCCCCCCCC-cccchhhH
Confidence 9999999999999999999999999999999999988888877 688999999985 689999999999 79999999
Q ss_pred HHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecCCCCC
Q 002740 771 SDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHPLPPP 840 (885)
Q Consensus 771 ~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~~~~~ 840 (885)
++|-.+||+++|-|+||.+++||.+.+...++|||||||||..++|.+|+|.+++.....+..|.|.|..
T Consensus 236 ~~fn~~n~lslisRahqlvm~g~nW~~~~~~vtiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k 305 (319)
T KOG0371|consen 236 EQFNHKNGLSLISRAHQLVMEGYNWYHLWNVVTIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRK 305 (319)
T ss_pred HHhhccCCchHhHHHHHHHhcccceeeecceeEEccCCchhhccccHHHHhhhhhccCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999986544
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=1e-62 Score=507.22 Aligned_cols=271 Identities=38% Similarity=0.663 Sum_probs=249.7
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHH
Q 002740 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLE 632 (885)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~e 632 (885)
.|+++...+|+.++..+|++|++++++++||.|||||||||.||+++|+..|.|... +|+|||||||||.+|+|
T Consensus 60 rl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t------~YLFLGDYVDRGyFSiE 133 (517)
T KOG0375|consen 60 RLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANT------RYLFLGDYVDRGYFSIE 133 (517)
T ss_pred chhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccc------eeEeeccccccceeeee
Confidence 378899999999999999999999999999999999999999999999999888766 99999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCC
Q 002740 633 TITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGR 712 (885)
Q Consensus 633 vl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~ 712 (885)
|+.+|.+||+.||..++|||||||++.+...|.|..||..||.+ .+|+.+.+.|++||+||+.++++||||||+||
T Consensus 134 CvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKYse----~vYdaCmesFd~LPLAAlmNqQflCVHGGlSP 209 (517)
T KOG0375|consen 134 CVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE----RVYDACMESFDCLPLAALMNQQFLCVHGGLSP 209 (517)
T ss_pred hHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhccH----HHHHHHHHHhccchHHHHhcCceEEecCCCCc
Confidence 99999999999999999999999999999999999999999954 69999999999999999999999999999999
Q ss_pred CCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCC----CCCcccC-CCCCceEEeCHHHHHHHHHHcCCeEEEEecc
Q 002740 713 SIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS----IEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 787 (885)
Q Consensus 713 ~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~----~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 787 (885)
.+.+++||++|.|..++|..+ .+||||||||.++.+ -+.|.+| .||++ |.|.-.++.+||+.|||--|||+||
T Consensus 210 Ei~tl~DIr~l~RF~EpPa~G-pmCDLLWsDPlEdfgnek~~e~f~hNsvRGCS-yfysy~A~C~FLq~nnLLSIiRAHE 287 (517)
T KOG0375|consen 210 EIHTLDDIRKLDRFKEPPAFG-PMCDLLWSDPLEDFGNEKTSEHFTHNSVRGCS-YFYSYPAVCEFLQNNNLLSIIRAHE 287 (517)
T ss_pred ccccHHHHHhhhhccCCCccC-cchhhhccChhhhccccccccccccCcccccc-ceechHHHHHHHHhCCchhhhhhhh
Confidence 999999999999999999887 899999999987422 2456666 79999 7899999999999999999999999
Q ss_pred ccccceEEecCC------eEEEEeecccccCCCCCeEEEEEEcCcceEEeEEecC
Q 002740 788 CVMDGFERFAQG------QLITLFSATNYCGTANNAGAILVVGRGLVVVPKLIHP 836 (885)
Q Consensus 788 ~~~~G~~~~~~~------~~itvfSa~~y~~~~~n~ga~l~~~~~~~~~~~~~~~ 836 (885)
.+..||+.+... .||||||||||-+.++|++|||...++. +..+.|.-
T Consensus 288 AQDaGYRMYrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNV-MNIRQFnc 341 (517)
T KOG0375|consen 288 AQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNC 341 (517)
T ss_pred hhhhhhhhhhcccccCCchheeeecCCchhhhhccHHHHhhhhccc-ceeeccCC
Confidence 999999987665 4899999999999999999999987654 34455543
No 17
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=100.00 E-value=6e-53 Score=444.59 Aligned_cols=280 Identities=33% Similarity=0.613 Sum_probs=248.0
Q ss_pred HHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeeec----CCeEEEecCCCCHHHHHHHHHHhCCC
Q 002740 531 HKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQLR----APVKVFGDLHGQFGDLMRLFDEYGFP 606 (885)
Q Consensus 531 ~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~----~~i~vvGDiHG~~~~L~~il~~~g~~ 606 (885)
++.+|+.+-.. ..|....+..|+.+|+++|++-|++-++. ..|.||||+||.++||+-||-+.|+|
T Consensus 121 i~~lieaFk~k----------q~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlP 190 (631)
T KOG0377|consen 121 IDLLIEAFKKK----------QRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLP 190 (631)
T ss_pred HHHHHHHHHHh----------hhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCC
Confidence 45666665432 25788899999999999999999999875 46999999999999999999999999
Q ss_pred CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhh
Q 002740 607 STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRF 686 (885)
Q Consensus 607 ~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~ 686 (885)
+.++ .|||.||+||||.+|+|||++|+++-+.||..+||-|||||+..+|..|||..|...+|... +..+...+
T Consensus 191 S~~n-----pYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~-~k~Ilr~l 264 (631)
T KOG0377|consen 191 SSSN-----PYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRH-GKRILRFL 264 (631)
T ss_pred CCCC-----CeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhc-ccHHHHHH
Confidence 9875 79999999999999999999999999999999999999999999999999999999999876 67788899
Q ss_pred hhhccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcc-----cCC----------------CCcchhccccCCCC
Q 002740 687 NQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPIT-----MDA----------------GSIILMDLLWSDPT 745 (885)
Q Consensus 687 ~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~-----~~~----------------~~~~~~dllWsdP~ 745 (885)
.++|.|||++.+|+.+||+||||||.. ++++-|.+|+|-.. .|. +-+.+.|+|||||.
T Consensus 265 eevy~WLPi~tiid~~ilvvHGGiSd~-Tdl~ll~kIeR~k~~Svlrpp~ek~~d~e~~s~~vg~dEW~Qi~DImWSDP~ 343 (631)
T KOG0377|consen 265 EEVYRWLPIGTIIDSRILVVHGGISDS-TDLDLLDKIERGKYVSVLRPPTEKGRDGEKLSKAVGVDEWQQIFDIMWSDPQ 343 (631)
T ss_pred HHHHHhcchhhhcccceEEEecCcccc-hhHHHHhhhhccceeEEecCCcccCccCCchhhhcChHHHHHHHHHHhcCcc
Confidence 999999999999999999999999976 77777777766321 010 11357899999998
Q ss_pred CCCCCCCcccC-CCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEc
Q 002740 746 ENDSIEGLRPN-ARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG 824 (885)
Q Consensus 746 ~~~~~~~~~~n-~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~ 824 (885)
.. .|..|| .||.| ++||+|++.+||++++++++||+|||.++|||+.++++|+|||||+||.....|+||++.+.
T Consensus 344 ~~---~GC~pNt~RGgG-~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GSNrGAYikl~ 419 (631)
T KOG0377|consen 344 AT---MGCVPNTLRGGG-CYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGSNRGAYIKLG 419 (631)
T ss_pred cc---cCCCcccccCCc-ceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecCCCceEEEeC
Confidence 63 677888 79999 58999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcceEEe
Q 002740 825 RGLVVVP 831 (885)
Q Consensus 825 ~~~~~~~ 831 (885)
+.++.-+
T Consensus 420 ~~~~Phf 426 (631)
T KOG0377|consen 420 NQLTPHF 426 (631)
T ss_pred CCCCchH
Confidence 8775433
No 18
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=100.00 E-value=2.9e-46 Score=406.79 Aligned_cols=274 Identities=38% Similarity=0.664 Sum_probs=250.4
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecCC----eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 002740 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRAP----VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 628 (885)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~----i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~ 628 (885)
.+...-...|+..+.+++.++|+++++..| +.|+||+|||+.||+++|+..|.|+... .|+|.||+||||.
T Consensus 182 ~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~-----~ylfngdfv~rgs 256 (476)
T KOG0376|consen 182 KLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETN-----PYLFNGDFVDRGS 256 (476)
T ss_pred ccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCcc-----cccccCceeeecc
Confidence 355666778999999999999999998754 8999999999999999999999998764 8999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecC
Q 002740 629 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 708 (885)
Q Consensus 629 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHg 708 (885)
.|.|++..+++.|+.+|+++|++|||||...++..|||..++..+|.+ ..+..+.++|.+||++.+|+++++.+||
T Consensus 257 ~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte----~~~~~f~~~f~~LPl~~~i~~~~~~~hg 332 (476)
T KOG0376|consen 257 WSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE----EMFNLFSEVFIWLPLAHLINNKVLVMHG 332 (476)
T ss_pred cceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH----HHHHhhhhhhccccchhhhcCceEEEec
Confidence 999999999999999999999999999999999999999999999965 4677777999999999999999999999
Q ss_pred CCC-CCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEecc
Q 002740 709 GIG-RSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHE 787 (885)
Q Consensus 709 Gi~-~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~ 787 (885)
|+. +.-.+++||++|.|+...+..+ .++|+|||||.. ..|..++.||.| ..||+|+.++||+.|++++|||+||
T Consensus 333 glf~~~~v~l~d~r~i~r~~~~~~~~-~~~~~lws~pq~---~~g~s~S~r~~g-~~fG~d~t~~f~~~n~l~~i~rshe 407 (476)
T KOG0376|consen 333 GLFSPDGVTLEDFRNIDRFEQPPEEG-LMCELLWSDPQP---ANGRSPSKRGVG-LQFGPDVTERFLQDNNLDKIIRSHE 407 (476)
T ss_pred CcCCCCCccHHHHHhhhhccCCcccc-cccccccCCCcc---ccCCCccccCce-eeeCCCchhhHHhhcchHHHhhccc
Confidence 985 4557899999999995555444 899999999986 478999999999 5899999999999999999999999
Q ss_pred ccccceEEecCCeEEEEeecccccCCCCCeEEEEEEc-CcceEEeEEecCCCCC
Q 002740 788 CVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVG-RGLVVVPKLIHPLPPP 840 (885)
Q Consensus 788 ~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~-~~~~~~~~~~~~~~~~ 840 (885)
+.+.||++.++|+|+|||||||||...+|.||++.++ ++++..+..|.++|-.
T Consensus 408 ~~d~gy~~eh~g~l~tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~ 461 (476)
T KOG0376|consen 408 VKDEGYEVEHSGKLITVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHP 461 (476)
T ss_pred cCCCceeeecCCcEEEEecCcchhhhcCCcceEEEecCCCCccceeecccCCCC
Confidence 9999999999999999999999999999999999998 7788888888877644
No 19
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.3e-36 Score=352.63 Aligned_cols=304 Identities=22% Similarity=0.334 Sum_probs=243.5
Q ss_pred cceEecCCC---CCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC
Q 002740 17 ETYWDTDED---APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (885)
Q Consensus 17 ~~~w~~~~~---~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~ 93 (885)
.++|..... +|.||.+|+++++ +++||+|||....... ..+++|+||+.+++|+.++.+
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~~------------~~~~v~~yD~~~~~W~~~~~~ 211 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQV------GNKIYSFGGEFTPNQP------------IDKHLYVFDLETRTWSISPAT 211 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEE------CCEEEEECCcCCCCCC------------eeCcEEEEECCCCEEEeCCCC
Confidence 378986654 6899999999999 8999999998643321 458899999999999998877
Q ss_pred CCCCc-ccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecC
Q 002740 94 GEPPS-PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGN 172 (885)
Q Consensus 94 ~~~P~-~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~ 172 (885)
+..|. +|.+|++++++++|||+||... ...++++|+||+.+ .+|.++...+..|.+|++|+++++++ +||||||.
T Consensus 212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t--~~W~~l~~~~~~P~~R~~h~~~~~~~-~iYv~GG~ 287 (470)
T PLN02193 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTT--NEWKLLTPVEEGPTPRSFHSMAADEE-NVYVFGGV 287 (470)
T ss_pred CCCCCCcccceEEEEECCEEEEECCCCC-CCCCccEEEEECCC--CEEEEcCcCCCCCCCccceEEEEECC-EEEEECCC
Confidence 66665 4678999999999999999764 34679999999998 45999865555589999999988876 89999999
Q ss_pred CCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC
Q 002740 173 DGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP 252 (885)
Q Consensus 173 ~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~ 252 (885)
+....++++++||+.++ +|+.+...+.+|.+|..|+++++ ++++|++||.++. .++++|.|+..++ +|..++
T Consensus 288 ~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~--~~~dv~~yD~~t~---~W~~~~ 359 (470)
T PLN02193 288 SATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGC--EVDDVHYYDPVQD---KWTQVE 359 (470)
T ss_pred CCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCC--ccCceEEEECCCC---EEEEec
Confidence 88888999999999999 99999877777889999888765 6689999997543 4799999999877 555554
Q ss_pred --CCCCCccceeEEEEECCEEEEEcccCCCCC-----CccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCc
Q 002740 253 --GVAPSPRYQHAAVFVGARLHVTGGALRGGR-----AIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLEL 325 (885)
Q Consensus 253 --~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~-----~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p 325 (885)
+..|.+|..|+++.++++||||||...... .....+++++||+.+++|+.+..++.. ...|
T Consensus 360 ~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~------------~~~P 427 (470)
T PLN02193 360 TFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE------------EETP 427 (470)
T ss_pred cCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC------------CCCC
Confidence 456889999999999999999999864211 011256899999999999999866421 1235
Q ss_pred ccccceEEE--EE-C-CEEEEEcCCCC-CCCCCcEEEeeCCC
Q 002740 326 MRRCRHASA--SI-G-VRIYIYGGLKG-DILLDDFLVAENSP 362 (885)
Q Consensus 326 ~~R~~hs~~--~~-~-~~IyI~GG~~~-~~~~~D~~~ld~~~ 362 (885)
.+|..|+++ .+ + +.|++|||+++ +..++|+|.|++++
T Consensus 428 ~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 428 SSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred CCCccccceeeEEcCCceEEEEcCCCCccccccceEEEecCC
Confidence 677666532 23 3 45999999974 58899999998764
No 20
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.3e-36 Score=337.91 Aligned_cols=306 Identities=22% Similarity=0.281 Sum_probs=235.5
Q ss_pred cccceEecCCC----CCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEe
Q 002740 15 TLETYWDTDED----APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRI 90 (885)
Q Consensus 15 ~~~~~w~~~~~----~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l 90 (885)
+.+..|.++.. +|.||.+|+++++ +++||||||....... ..+++|+||+.+++|+++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~------~~~iyv~GG~~~~~~~------------~~~~~~~yd~~~~~W~~~ 65 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVV------GDKLYSFGGELKPNEH------------IDKDLYVFDFNTHTWSIA 65 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEE------CCEEEEECCccCCCCc------------eeCcEEEEECCCCEEEEc
Confidence 45677987654 7999999999999 8899999998643221 468999999999999999
Q ss_pred cCCCCCCcc-cCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeec--CCCCCCccccEEEEECCcEEE
Q 002740 91 RPAGEPPSP-RAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ--GQGPGPRYGHVMDLVSQRYLV 167 (885)
Q Consensus 91 ~~~~~~P~~-R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~--~~~p~~R~~h~~~~~~~~~ly 167 (885)
++++..|.. +.+|++++++++||+|||.... ...+++++||+.+ .+|..+... ...|.+|.+|+++++++ +||
T Consensus 66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~-~iy 141 (341)
T PLN02153 66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEK-REFSDFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDEN-HVY 141 (341)
T ss_pred CccCCCCCCccCceEEEEECCEEEEECCCCCC-CccCcEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEEECC-EEE
Confidence 887655543 5589999999999999997543 4578999999998 459988421 12388999999988876 899
Q ss_pred EEecCCCC------cccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCC-------CCcccc
Q 002740 168 SVSGNDGK------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS-------GAPLAD 234 (885)
Q Consensus 168 v~GG~~~~------~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~-------~~~l~d 234 (885)
||||.+.. ..++++++||+.++ +|..+...+.+|.+|..|++++ .++++|++||.+.. ...+++
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~ 218 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNA 218 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCc
Confidence 99998643 24689999999999 9999988777778899998776 56689999886421 123688
Q ss_pred eEEEEcCCCCeeEEEeCC--CCCCCccceeEEEEECCEEEEEcccCCCC-----CCccCCCcEEEEECCCCeEEEccCCc
Q 002740 235 AYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGGALRGG-----RAIEGEAAVAVLDTAAGVWLDRNGLV 307 (885)
Q Consensus 235 v~~l~~~~~~~W~w~~~~--~~~P~~R~~hs~~~~~~~i~V~GG~~~~~-----~~~~~~~~v~~yD~~t~~W~~v~~~~ 307 (885)
++.|+..++ +|.++. +..|.+|..|++++++++||||||..... ......+++++||+++++|+.+....
T Consensus 219 v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 219 VQFFDPASG---KWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECG 295 (341)
T ss_pred eEEEEcCCC---cEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCC
Confidence 999999877 566554 45688999999999999999999974211 01112568999999999999987542
Q ss_pred ccCCCCCCCCCCCCCcCcccccceEEEEE--CCEEEEEcCCCCC-CCCCcEEEeeCC
Q 002740 308 TSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGD-ILLDDFLVAENS 361 (885)
Q Consensus 308 ~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~IyI~GG~~~~-~~~~D~~~ld~~ 361 (885)
. .+.|..|+.++++.+ +++||||||+++. ..++|+|.++..
T Consensus 296 ~-------------~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 296 E-------------PAMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred C-------------CCCCCccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 1 122345555555554 3489999999764 688999998753
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=302.40 Aligned_cols=290 Identities=24% Similarity=0.381 Sum_probs=240.6
Q ss_pred eEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC-----
Q 002740 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA----- 93 (885)
Q Consensus 19 ~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~----- 93 (885)
.|..--+--+.|.+|+++.+ +.+||-|||+...+..... -.-||++++..+..|+++++.
T Consensus 3 ~WTVHLeGGPrRVNHAavaV------G~riYSFGGYCsGedy~~~---------~piDVH~lNa~~~RWtk~pp~~~ka~ 67 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAV------GSRIYSFGGYCSGEDYDAK---------DPIDVHVLNAENYRWTKMPPGITKAT 67 (392)
T ss_pred eEEEEecCCcccccceeeee------cceEEecCCcccccccccC---------CcceeEEeeccceeEEecCccccccc
Confidence 46533333467899999999 9999999999876542111 245899999999999999872
Q ss_pred -----CCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEE
Q 002740 94 -----GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVS 168 (885)
Q Consensus 94 -----~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv 168 (885)
.-.|.-|++|+.+.+++++||.||.+......|-+++||+.+ .+|.+..+.|..|.+|.||+++++++ .+|+
T Consensus 68 i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t--~~W~~p~v~G~vPgaRDGHsAcV~gn-~Myi 144 (392)
T KOG4693|consen 68 IESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPET--NVWKKPEVEGFVPGARDGHSACVWGN-QMYI 144 (392)
T ss_pred ccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccc--ccccccceeeecCCccCCceeeEECc-EEEE
Confidence 114677999999999999999999988777889999999999 56999999999999999999999998 9999
Q ss_pred EecCCC--CcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCC--------CcccceEEE
Q 002740 169 VSGNDG--KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG--------APLADAYGL 238 (885)
Q Consensus 169 ~GG~~~--~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~--------~~l~dv~~l 238 (885)
|||+.. +.+.+|++++|+.|. +|..+...+.+|.-|.+|+++++. +++|||||+.... ..-+.+..+
T Consensus 145 FGGye~~a~~FS~d~h~ld~~Tm--tWr~~~Tkg~PprwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~l 221 (392)
T KOG4693|consen 145 FGGYEEDAQRFSQDTHVLDFATM--TWREMHTKGDPPRWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMAL 221 (392)
T ss_pred ecChHHHHHhhhccceeEeccce--eeeehhccCCCchhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEE
Confidence 999854 567899999999998 999999999999999999998765 8999999985332 122233445
Q ss_pred EcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCC
Q 002740 239 LMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGE 318 (885)
Q Consensus 239 ~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~ 318 (885)
+.. ++.|......++.|..|..|++.+.+++||+|||+++.-. ...+++|+||+.+..|..+..-..
T Consensus 222 d~~-T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln--~HfndLy~FdP~t~~W~~I~~~Gk---------- 288 (392)
T KOG4693|consen 222 DLA-TGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLN--VHFNDLYCFDPKTSMWSVISVRGK---------- 288 (392)
T ss_pred ecc-ccccccCCCCCcCCCcccccceEEEcceEEEecccchhhh--hhhcceeecccccchheeeeccCC----------
Confidence 554 5566666666888999999999999999999999976543 237899999999999999986643
Q ss_pred CCCCcCcccccceEEEEECCEEEEEcCCC
Q 002740 319 HDPSLELMRRCRHASASIGVRIYIYGGLK 347 (885)
Q Consensus 319 ~~~~~~p~~R~~hs~~~~~~~IyI~GG~~ 347 (885)
.|.+|.++++++.++++|+|||..
T Consensus 289 -----~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 289 -----YPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred -----CCCcccceeEEEECCEEEEecCCC
Confidence 377999999999999999999975
No 22
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.9e-32 Score=317.98 Aligned_cols=281 Identities=23% Similarity=0.323 Sum_probs=228.8
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCC----CcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCC
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT----RKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGP 120 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t----~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~ 120 (885)
+++|+.|+|.....- ..-.+|.+++.+ ++|.++++++..|.||++|+++++++.|||+||...
T Consensus 120 ~~~ivgf~G~~~~~~-------------~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~ 186 (470)
T PLN02193 120 GGKIVGFHGRSTDVL-------------HSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFT 186 (470)
T ss_pred CCeEEEEeccCCCcE-------------EeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCC
Confidence 889999999875431 112245557655 799999988888999999999999999999999753
Q ss_pred C-CCccccEEEEEecCCccEEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCC
Q 002740 121 A-GHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (885)
Q Consensus 121 ~-~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~-~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~ 198 (885)
. ....+++|+||+.++ +|..+...+..|. +|.+|+++++++ +||||||.+....++++|+||+.++ +|+++.+
T Consensus 187 ~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~~-~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~ 261 (470)
T PLN02193 187 PNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIGS-TLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTP 261 (470)
T ss_pred CCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEECC-EEEEECCCCCCCCCccEEEEECCCC--EEEEcCc
Confidence 3 335578999999994 5998866666665 467899988886 8999999988788999999999999 9999988
Q ss_pred CCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC--CCCCCccceeEEEEECCEEEEEcc
Q 002740 199 EGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSPRYQHAAVFVGARLHVTGG 276 (885)
Q Consensus 199 ~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~--~~~P~~R~~hs~~~~~~~i~V~GG 276 (885)
.+..|.+|.+|++++ .+++|||+||.+.. ..+++++.|+..++ +|..++ +..|.+|.+|++++++++|||+||
T Consensus 262 ~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~-~~~~~~~~yd~~t~---~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG 336 (470)
T PLN02193 262 VEEGPTPRSFHSMAA-DEENVYVFGGVSAT-ARLKTLDSYNIVDK---KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYG 336 (470)
T ss_pred CCCCCCCccceEEEE-ECCEEEEECCCCCC-CCcceEEEEECCCC---EEEeCCCCCCCCCCCCCcEEEEECCcEEEEEC
Confidence 777789999998876 56789999998654 34789999999877 555554 445789999999999999999999
Q ss_pred cCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCC--------
Q 002740 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------- 348 (885)
Q Consensus 277 ~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~-------- 348 (885)
..+. ..+++++||+.+++|+.+..+.. .|.+|..|++++++++||||||...
T Consensus 337 ~~g~-----~~~dv~~yD~~t~~W~~~~~~g~---------------~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 396 (470)
T PLN02193 337 FNGC-----EVDDVHYYDPVQDKWTQVETFGV---------------RPSERSVFASAAVGKHIVIFGGEIAMDPLAHVG 396 (470)
T ss_pred CCCC-----ccCceEEEECCCCEEEEeccCCC---------------CCCCcceeEEEEECCEEEEECCccCCccccccC
Confidence 7532 15789999999999999986532 2568999999999999999999753
Q ss_pred -CCCCCcEEEeeCCCCCcCCC
Q 002740 349 -DILLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 349 -~~~~~D~~~ld~~~~~~~~~ 368 (885)
...++|+|.||..+.++...
T Consensus 397 ~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 397 PGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccceeccEEEEEcCcCEEEEc
Confidence 24568999999998888643
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.1e-34 Score=306.29 Aligned_cols=303 Identities=26% Similarity=0.445 Sum_probs=254.7
Q ss_pred cCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccC
Q 002740 22 TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRA 101 (885)
Q Consensus 22 ~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~ 101 (885)
..++.|-||.||-++++ ..-|++|||-... +.+++++|+..+|+|..-...|+.|.+.+
T Consensus 25 ~tGPvPrpRHGHRAVai------kELiviFGGGNEG---------------iiDELHvYNTatnqWf~PavrGDiPpgcA 83 (830)
T KOG4152|consen 25 STGPVPRPRHGHRAVAI------KELIVIFGGGNEG---------------IIDELHVYNTATNQWFAPAVRGDIPPGCA 83 (830)
T ss_pred ccCCCCCccccchheee------eeeEEEecCCccc---------------chhhhhhhccccceeecchhcCCCCCchh
Confidence 35788999999999999 8899999997632 68999999999999999999999999999
Q ss_pred ccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEee----cCCCCCCccccEEEEECCcEEEEEecCCC---
Q 002740 102 AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVV----QGQGPGPRYGHVMDLVSQRYLVSVSGNDG--- 174 (885)
Q Consensus 102 ~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~----~~~~p~~R~~h~~~~~~~~~lyv~GG~~~--- 174 (885)
+|..++.+++||+|||.-+-+.++||+|.+-... |.|+++.. +|.+|.||.||+.+++++ +.|+|||-..
T Consensus 84 A~GfvcdGtrilvFGGMvEYGkYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdse 160 (830)
T KOG4152|consen 84 AFGFVCDGTRILVFGGMVEYGKYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSE 160 (830)
T ss_pred hcceEecCceEEEEccEeeeccccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEecccccccc
Confidence 9999999999999999988899999998766655 99999864 688999999999998886 8999999522
Q ss_pred ------CcccCcEEEEeCCCC--CeeEEEcCCCCCCCCccccceEEEe--c---CCEEEEEccCCCCCCcccceEEEEcC
Q 002740 175 ------KRVLSDAWALDTAQK--PYVWQRLNPEGDRPSARMYATASAR--S---DGMFLLCGGRDASGAPLADAYGLLMH 241 (885)
Q Consensus 175 ------~~~~ndv~~~d~~t~--~~~W~~l~~~g~~P~~r~~hsa~~~--~---~~~l~v~GG~~~~~~~l~dv~~l~~~ 241 (885)
..++||+|++++.-. -..|......|..|++|-.|+++++ . ..+|||+||.++ ..+.|+|.+|.+
T Consensus 161 DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 161 DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLD 238 (830)
T ss_pred CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecc
Confidence 257999999988743 3569999999999999999999987 2 238999999754 589999999998
Q ss_pred CCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCC---C-------CCccCCCcEEEEECCCCeEEEccCCcccCC
Q 002740 242 RNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRG---G-------RAIEGEAAVAVLDTAAGVWLDRNGLVTSSR 311 (885)
Q Consensus 242 ~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~---~-------~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~ 311 (885)
+- .|...+..|..|.||.-|++..+|++||||||+.-. . ..-...+++-++|+.+..|..+-.-.
T Consensus 239 Tl-~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~---- 313 (830)
T KOG4152|consen 239 TL-TWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDT---- 313 (830)
T ss_pred ee-ecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecc----
Confidence 55 777777789999999999999999999999998511 1 00112667889999999999876432
Q ss_pred CCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCC-------CCCCCcEEEeeCCC
Q 002740 312 TSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-------DILLDDFLVAENSP 362 (885)
Q Consensus 312 ~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~-------~~~~~D~~~ld~~~ 362 (885)
.+++..|.+|.+||+++++.++||..|.++ ..-..|+|.||+..
T Consensus 314 -------~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 314 -------LEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred -------ccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhcccC
Confidence 234557899999999999999999999886 24468999999765
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=9.3e-34 Score=299.29 Aligned_cols=325 Identities=26% Similarity=0.404 Sum_probs=256.0
Q ss_pred eEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCc
Q 002740 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPS 98 (885)
Q Consensus 19 ~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~ 98 (885)
..+...+.|.||.+.++++.|. .+.|+||||-..++... .++||+|+||+.++.|+++... +.|.
T Consensus 56 ~~e~~~~~PspRsn~sl~~nPe----keELilfGGEf~ngqkT----------~vYndLy~Yn~k~~eWkk~~sp-n~P~ 120 (521)
T KOG1230|consen 56 VVETSVPPPSPRSNPSLFANPE----KEELILFGGEFYNGQKT----------HVYNDLYSYNTKKNEWKKVVSP-NAPP 120 (521)
T ss_pred eeeccCCCCCCCCCcceeeccC----cceeEEecceeecceeE----------EEeeeeeEEeccccceeEeccC-CCcC
Confidence 3455567899999999998865 55999999988776432 2789999999999999999754 5778
Q ss_pred ccCccEEEEEC-CEEEEEcCcCCC-----CCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecC
Q 002740 99 PRAAHAAAAVG-TMVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGN 172 (885)
Q Consensus 99 ~R~~ha~~~~~-~~iyv~GG~~~~-----~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~ 172 (885)
||++|.++++. +.+|+|||.... -..+.|+|+||+.+++ |.++...| .|.+|+||.|+++.. +|++|||.
T Consensus 121 pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trk--weql~~~g-~PS~RSGHRMvawK~-~lilFGGF 196 (521)
T KOG1230|consen 121 PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRK--WEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGF 196 (521)
T ss_pred CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccch--heeeccCC-CCCCCccceeEEeee-eEEEEcce
Confidence 99999999996 899999996421 1457899999999965 99997644 899999999999987 89999997
Q ss_pred CC----CcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCC--------CCCcccceEEEEc
Q 002740 173 DG----KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA--------SGAPLADAYGLLM 240 (885)
Q Consensus 173 ~~----~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~--------~~~~l~dv~~l~~ 240 (885)
.. ..++||||+||+.+ |+|+++.+.|..|.||.+|+..+..++.|||+||++. .+...+|+|.++.
T Consensus 197 hd~nr~y~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p 274 (521)
T KOG1230|consen 197 HDSNRDYIYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKP 274 (521)
T ss_pred ecCCCceEEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecC
Confidence 43 34799999999988 5999999999999999999999998999999999853 2567999999988
Q ss_pred CC--CCeeEEEeCC--CCCCCccceeEEEEE-CCEEEEEcccCCCC-----CCccCCCcEEEEECCCCeEEEccCCcccC
Q 002740 241 HR--NGQWEWTLAP--GVAPSPRYQHAAVFV-GARLHVTGGALRGG-----RAIEGEAAVAVLDTAAGVWLDRNGLVTSS 310 (885)
Q Consensus 241 ~~--~~~W~w~~~~--~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~-----~~~~~~~~v~~yD~~t~~W~~v~~~~~~~ 310 (885)
.. ..+|.|.++. +..|.||.+.++++. +++-+.|||...-. -...+.++++.||+..++|+........+
T Consensus 275 ~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S 354 (521)
T KOG1230|consen 275 EDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQLQGKKS 354 (521)
T ss_pred CcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhhccCCC
Confidence 75 4589999986 788999999999998 56999999986521 11124789999999999998764332221
Q ss_pred C-----CCC--------------C--CC-----------------------------------------CCCCCcCcccc
Q 002740 311 R-----TSK--------------G--HG-----------------------------------------EHDPSLELMRR 328 (885)
Q Consensus 311 ~-----~~~--------------~--~~-----------------------------------------~~~~~~~p~~R 328 (885)
. ..+ . +. +..+..-+.+|
T Consensus 355 ~~~~~r~~~Kd~~k~~~~~~~G~~tkd~e~~~v~k~v~~~~d~l~i~v~v~~~g~~~~p~s~~e~s~~~~~e~~~~~~pr 434 (521)
T KOG1230|consen 355 PATSRRRSRKDQEKELQRPTVGPNTKDLEVQAVDKAVCPTTDSLFIYVGVWEPGEADYPESEDEASREGDREPDEGEFPR 434 (521)
T ss_pred CccccccccccccccccCcccCCCcccccceecceeeeecCCceEEEeecCCCCCCCCcccccccccccCCCCCCCCCcc
Confidence 1 000 0 00 11233556778
Q ss_pred cceEEEEECCEEEEEcCCC----CCCCCCcEEEeeCCCCC
Q 002740 329 CRHASASIGVRIYIYGGLK----GDILLDDFLVAENSPFQ 364 (885)
Q Consensus 329 ~~hs~~~~~~~IyI~GG~~----~~~~~~D~~~ld~~~~~ 364 (885)
.....++-.+.+||+||.- -...+.|+|.+|+...+
T Consensus 435 ~d~~~~v~~G~~~i~gGi~ee~d~q~tl~dfyal~~hr~~ 474 (521)
T KOG1230|consen 435 MDDELSVKVGVLYIGGGIFEERDWQPTLRDFYALDLHRNE 474 (521)
T ss_pred CCCccCcccceEEecCCCcccccccchHHHHhhhhhhhhh
Confidence 8778888888999999853 23668888888876654
No 25
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.8e-32 Score=319.42 Aligned_cols=269 Identities=20% Similarity=0.317 Sum_probs=238.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~ 124 (885)
.+.||++||...... ..+.+..||+.++.|..++. +|.+|..++++++++.||++||.+.+...
T Consensus 284 ~~~l~~vGG~~~~~~-------------~~~~ve~yd~~~~~w~~~a~---m~~~r~~~~~~~~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQ-------------SLRSVECYDPKTNEWSSLAP---MPSPRCRVGVAVLNGKLYVVGGYDSGSDR 347 (571)
T ss_pred CCeEEEECCCCCCCc-------------ccceeEEecCCcCcEeecCC---CCcccccccEEEECCEEEEEccccCCCcc
Confidence 678999999997332 57999999999999999884 45899999999999999999998756778
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
++++|+||+.+++ |..+ .+|..+|.+++++++++ .||++||.++...++++++||+.++ +|+.+.++ +.
T Consensus 348 l~~ve~YD~~~~~--W~~~---a~M~~~R~~~~v~~l~g-~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m---~~ 416 (571)
T KOG4441|consen 348 LSSVERYDPRTNQ--WTPV---APMNTKRSDFGVAVLDG-KLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPM---LT 416 (571)
T ss_pred cceEEEecCCCCc--eecc---CCccCccccceeEEECC-EEEEEeccccccccccEEEecCCCC--cccccCCC---Cc
Confidence 8999999999955 9998 89999999999999997 9999999999999999999999999 99999776 56
Q ss_pred ccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002740 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (885)
+|.+|+++ ..+++||++||.+.....++.+..||+.++ +|...+++ +.+|.++++++++++||++||.++..
T Consensus 417 ~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M-~~~R~~~g~a~~~~~iYvvGG~~~~~--- 488 (571)
T KOG4441|consen 417 RRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM-NTRRSGFGVAVLNGKIYVVGGFDGTS--- 488 (571)
T ss_pred ceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc-ccccccceEEEECCEEEEECCccCCC---
Confidence 66666555 578899999999988778999999999999 99999888 69999999999999999999988722
Q ss_pred cCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCCCCCcEEEeeCCCCC
Q 002740 285 EGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQ 364 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~~~ 364 (885)
...++++||+.+++|+.+..+.. +|..+++++++++||++||+++...++.+..+|-.+-+
T Consensus 489 -~~~~VE~ydp~~~~W~~v~~m~~------------------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 489 -ALSSVERYDPETNQWTMVAPMTS------------------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred -ccceEEEEcCCCCceeEcccCcc------------------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 25679999999999999988854 99999999999999999999999999999988866666
Q ss_pred cCC
Q 002740 365 SDV 367 (885)
Q Consensus 365 ~~~ 367 (885)
|..
T Consensus 550 W~~ 552 (571)
T KOG4441|consen 550 WTE 552 (571)
T ss_pred eee
Confidence 543
No 26
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=315.17 Aligned_cols=256 Identities=23% Similarity=0.397 Sum_probs=228.4
Q ss_pred CCCCCCCcccccceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCC-CCCCCCCCCCCcccccccCcEEEEECCC
Q 002740 6 WLHPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATA-IEGGATSSAPGIRLAGVTNSVHLYDVLT 84 (885)
Q Consensus 6 ~~~~~~~y~~~~~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~-~~~~~~~~~~~~~~~~~~~dv~~yD~~t 84 (885)
......+||+.++.|...+++|.+|..|+++++ +++||++||... .. ..+++++||+.+
T Consensus 299 ~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~------~~~lYv~GG~~~~~~--------------~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 299 SLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL------NGKLYVVGGYDSGSD--------------RLSSVERYDPRT 358 (571)
T ss_pred ccceeEEecCCcCcEeecCCCCcccccccEEEE------CCEEEEEccccCCCc--------------ccceEEEecCCC
Confidence 345678999999999999999999999999999 999999999995 22 579999999999
Q ss_pred CcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCc
Q 002740 85 RKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQR 164 (885)
Q Consensus 85 ~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~ 164 (885)
++|+.+++|. .+|..++++++++.||++||.+ +....+++++||+.+++ |..+ ++++.+|++|+++++++
T Consensus 359 ~~W~~~a~M~---~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~--W~~v---a~m~~~r~~~gv~~~~g- 428 (571)
T KOG4441|consen 359 NQWTPVAPMN---TKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNK--WTPV---APMLTRRSGHGVAVLGG- 428 (571)
T ss_pred CceeccCCcc---CccccceeEEECCEEEEEeccc-cccccccEEEecCCCCc--cccc---CCCCcceeeeEEEEECC-
Confidence 9999988665 8999999999999999999986 66688999999999955 9999 88999999999999997
Q ss_pred EEEEEecCCCCc-ccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCC
Q 002740 165 YLVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN 243 (885)
Q Consensus 165 ~lyv~GG~~~~~-~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~ 243 (885)
+||++||.++.. +++.|++||+.++ +|+.++++ +.+|.+|.++ ..+++||++||.++ ...+..++.|++.++
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M---~~~R~~~g~a-~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPM---NTRRSGFGVA-VLNGKIYVVGGFDG-TSALSSVERYDPETN 501 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCC--ceeecCCc---ccccccceEE-EECCEEEEECCccC-CCccceEEEEcCCCC
Confidence 999999999887 9999999999999 99999877 6778777755 46789999999988 455777999999999
Q ss_pred CeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCC
Q 002740 244 GQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 244 ~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
+|..++.+ +.+|..++++..++++|++||.++... .+++++||+++++|+....+
T Consensus 502 ---~W~~v~~m-~~~rs~~g~~~~~~~ly~vGG~~~~~~----l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 502 ---QWTMVAPM-TSPRSAVGVVVLGGKLYAVGGFDGNNN----LNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred ---ceeEcccC-ccccccccEEEECCEEEEEecccCccc----cceeEEcCCCCCceeeCCCc
Confidence 88888655 699999999999999999999766543 78999999999999999983
No 27
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1e-30 Score=293.17 Aligned_cols=279 Identities=21% Similarity=0.289 Sum_probs=210.6
Q ss_pred CCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEEC--CCCcEEEecCCCCCC-ccc
Q 002740 24 EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDV--LTRKWTRIRPAGEPP-SPR 100 (885)
Q Consensus 24 ~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~--~t~~W~~l~~~~~~P-~~R 100 (885)
+++|.+|..++++++ +++|||+||.. .+++++||+ .+++|++++.+ | .+|
T Consensus 2 ~~lp~~~~~~~~~~~------~~~vyv~GG~~------------------~~~~~~~d~~~~~~~W~~l~~~---p~~~R 54 (346)
T TIGR03547 2 PDLPVGFKNGTGAII------GDKVYVGLGSA------------------GTSWYKLDLKKPSKGWQKIADF---PGGPR 54 (346)
T ss_pred CCCCccccCceEEEE------CCEEEEEcccc------------------CCeeEEEECCCCCCCceECCCC---CCCCc
Confidence 578999999998899 89999999963 256899996 57899998854 4 479
Q ss_pred CccEEEEECCEEEEEcCcCCCC-----CccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC
Q 002740 101 AAHAAAAVGTMVVFQGGIGPAG-----HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK 175 (885)
Q Consensus 101 ~~ha~~~~~~~iyv~GG~~~~~-----~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~ 175 (885)
..|++++++++|||+||..... ...+++|+||+.+++ |+.+. ..+|.+|.+|+++...+++||++||.+..
T Consensus 55 ~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~ 130 (346)
T TIGR03547 55 NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKN 130 (346)
T ss_pred ccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCC--CCCCCcccceeEEEEeCCEEEEEcCcChH
Confidence 9999999999999999975322 246899999999954 99983 24677888888764444599999998642
Q ss_pred c----------------------------------ccCcEEEEeCCCCCeeEEEcCCCCCCCC-ccccceEEEecCCEEE
Q 002740 176 R----------------------------------VLSDAWALDTAQKPYVWQRLNPEGDRPS-ARMYATASARSDGMFL 220 (885)
Q Consensus 176 ~----------------------------------~~ndv~~~d~~t~~~~W~~l~~~g~~P~-~r~~hsa~~~~~~~l~ 220 (885)
. .++++++||+.++ +|+.+.++ |. +|..|+ ++..+++||
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~---p~~~r~~~~-~~~~~~~iy 204 (346)
T TIGR03547 131 IFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGEN---PFLGTAGSA-IVHKGNKLL 204 (346)
T ss_pred HHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccC---CCCcCCCce-EEEECCEEE
Confidence 1 2478999999999 99998655 54 455554 445688999
Q ss_pred EEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCcc-------ceeEEEEECCEEEEEcccCCCCCC----------
Q 002740 221 LCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPR-------YQHAAVFVGARLHVTGGALRGGRA---------- 283 (885)
Q Consensus 221 v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R-------~~hs~~~~~~~i~V~GG~~~~~~~---------- 283 (885)
|+||....+....+++.|+...+ ..+|...+.+ |.+| .+|+++.++++|||+||....+..
T Consensus 205 v~GG~~~~~~~~~~~~~y~~~~~-~~~W~~~~~m-~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~ 282 (346)
T TIGR03547 205 LINGEIKPGLRTAEVKQYLFTGG-KLEWNKLPPL-PPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYA 282 (346)
T ss_pred EEeeeeCCCccchheEEEEecCC-CceeeecCCC-CCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccc
Confidence 99998655444566777765211 2267777665 3443 567788899999999998632210
Q ss_pred ---ccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCC-CCCCCcEEEee
Q 002740 284 ---IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DILLDDFLVAE 359 (885)
Q Consensus 284 ---~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~-~~~~~D~~~ld 359 (885)
......+++||+++++|+.+..++. +|..+++++++++|||+||.+. ...++|++.+-
T Consensus 283 ~~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 283 HEGLIKAWSSEVYALDNGKWSKVGKLPQ------------------GLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred cCCCCceeEeeEEEecCCcccccCCCCC------------------CceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 0012468999999999999998844 8888999999999999999875 46788887653
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.98 E-value=1.2e-31 Score=268.81 Aligned_cols=242 Identities=23% Similarity=0.381 Sum_probs=212.9
Q ss_pred CcccccceEecCCC-------------CCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEE
Q 002740 12 SYRTLETYWDTDED-------------APGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVH 78 (885)
Q Consensus 12 ~y~~~~~~w~~~~~-------------~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~ 78 (885)
.++..+-+|.+.++ .|-.|.||+.+.+ ++++||+||...+++ .-|-+|
T Consensus 48 ~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y------~d~~yvWGGRND~eg-------------aCN~Ly 108 (392)
T KOG4693|consen 48 VLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY------QDKAYVWGGRNDDEG-------------ACNLLY 108 (392)
T ss_pred EeeccceeEEecCcccccccccCCCCccchhhcCceEEEE------cceEEEEcCccCccc-------------ccceee
Confidence 34556667775543 5668999999999 999999999998776 679999
Q ss_pred EEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcC-CCCCccccEEEEEecCCccEEEEEeecCCCCCCccccE
Q 002740 79 LYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHV 157 (885)
Q Consensus 79 ~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~-~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~ 157 (885)
.||+++++|.+....|..|.+|.+|+++++++.+|||||.. .....++|++++|+++ ++|..+-+.+.+|.-|..|+
T Consensus 109 ~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~T--mtWr~~~Tkg~PprwRDFH~ 186 (392)
T KOG4693|consen 109 EFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFAT--MTWREMHTKGDPPRWRDFHT 186 (392)
T ss_pred eeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccc--eeeeehhccCCCchhhhhhh
Confidence 99999999999999999999999999999999999999975 4567889999999999 77999999999999999999
Q ss_pred EEEECCcEEEEEecCCCC---------cccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCC
Q 002740 158 MDLVSQRYLVSVSGNDGK---------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDAS 228 (885)
Q Consensus 158 ~~~~~~~~lyv~GG~~~~---------~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~ 228 (885)
++++++ .+|+|||.... .+-+.+-.+|+.|+ .|....+.+..|..|+.|++.+ .|+++|+|||..+.
T Consensus 187 a~~~~~-~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fv-Yng~~Y~FGGYng~ 262 (392)
T KOG4693|consen 187 ASVIDG-MMYIFGGRSDESGPFHSIHEQYCDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFV-YNGKMYMFGGYNGT 262 (392)
T ss_pred hhhccc-eEEEeccccccCCCccchhhhhcceeEEEecccc--ccccCCCCCcCCCcccccceEE-EcceEEEecccchh
Confidence 999995 99999997542 24467888999999 9999988888899999999986 57899999999765
Q ss_pred C-CcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCC
Q 002740 229 G-APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALR 279 (885)
Q Consensus 229 ~-~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~ 279 (885)
- ..++|+|.|+..+. .|..+.+.+..|.+|..+++++.+++||+|||...
T Consensus 263 ln~HfndLy~FdP~t~-~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 263 LNVHFNDLYCFDPKTS-MWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred hhhhhcceeecccccc-hheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 3 56999999998865 88888899999999999999999999999999763
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=1.1e-30 Score=302.39 Aligned_cols=296 Identities=29% Similarity=0.459 Sum_probs=246.6
Q ss_pred CCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccC-cEEEEECCCCcEEEecCCCCCCcccC
Q 002740 23 DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTN-SVHLYDVLTRKWTRIRPAGEPPSPRA 101 (885)
Q Consensus 23 ~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~-dv~~yD~~t~~W~~l~~~~~~P~~R~ 101 (885)
.+..|.+|.+|+++.+ ++++|||||....... .+ |+|++|..+..|......+..|.+|+
T Consensus 54 ~~~~p~~R~~hs~~~~------~~~~~vfGG~~~~~~~-------------~~~dl~~~d~~~~~w~~~~~~g~~p~~r~ 114 (482)
T KOG0379|consen 54 LGVGPIPRAGHSAVLI------GNKLYVFGGYGSGDRL-------------TDLDLYVLDLESQLWTKPAATGDEPSPRY 114 (482)
T ss_pred CCCCcchhhccceeEE------CCEEEEECCCCCCCcc-------------ccceeEEeecCCcccccccccCCCCCccc
Confidence 3568899999999999 8999999999877642 22 69999999999999999999999999
Q ss_pred ccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc-ccCc
Q 002740 102 AHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSD 180 (885)
Q Consensus 102 ~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~-~~nd 180 (885)
+|++++++++||+|||........++++.||+.+++ |..+...+.+|.+|.+|+++++++ ++|||||.+... .+||
T Consensus 115 g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~-~l~vfGG~~~~~~~~nd 191 (482)
T KOG0379|consen 115 GHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGT-KLVVFGGIGGTGDSLND 191 (482)
T ss_pred ceeEEEECCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECC-EEEEECCccCcccceee
Confidence 999999999999999987666778999999999955 999999999999999999999995 999999998866 8999
Q ss_pred EEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC--CCCCCc
Q 002740 181 AWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP--GVAPSP 258 (885)
Q Consensus 181 v~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~--~~~P~~ 258 (885)
+|+||+++. +|.++...++.|.||.+|+++++.+. ++++||.+.....++|+|.|+..+ |.|.... +..|.+
T Consensus 192 l~i~d~~~~--~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~---~~W~~~~~~g~~p~~ 265 (482)
T KOG0379|consen 192 LHIYDLETS--TWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLST---WEWKLLPTGGDLPSP 265 (482)
T ss_pred eeeeccccc--cceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeeccc---ceeeeccccCCCCCC
Confidence 999999999 89999999999999999999987765 555555555557799999999986 6777554 778999
Q ss_pred cceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECC
Q 002740 259 RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGV 338 (885)
Q Consensus 259 R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~ 338 (885)
|++|+.+..+.+++++||..... .....++|.||+++..|..+..... ..|.+|..|+.+....
T Consensus 266 R~~h~~~~~~~~~~l~gG~~~~~--~~~l~~~~~l~~~~~~w~~~~~~~~--------------~~~~~~~~~~~~~~~~ 329 (482)
T KOG0379|consen 266 RSGHSLTVSGDHLLLFGGGTDPK--QEPLGDLYGLDLETLVWSKVESVGV--------------VRPSPRLGHAAELIDE 329 (482)
T ss_pred cceeeeEEECCEEEEEcCCcccc--cccccccccccccccceeeeecccc--------------ccccccccccceeecc
Confidence 99999999999999999976541 1236789999999999999998751 2256888888887754
Q ss_pred ----EEEEEcCCCC-CCCCCcEEEeeCCC
Q 002740 339 ----RIYIYGGLKG-DILLDDFLVAENSP 362 (885)
Q Consensus 339 ----~IyI~GG~~~-~~~~~D~~~ld~~~ 362 (885)
.+.++||... ....++++.+....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (482)
T KOG0379|consen 330 LGKDGLGILGGNQILGERLADVFSLQIKL 358 (482)
T ss_pred CCccceeeecCccccccchhhcccccccc
Confidence 3555555322 24455555555443
No 30
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=2.5e-30 Score=292.76 Aligned_cols=288 Identities=18% Similarity=0.219 Sum_probs=216.5
Q ss_pred ceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECC--CCcEEEecCCCC
Q 002740 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVL--TRKWTRIRPAGE 95 (885)
Q Consensus 18 ~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~--t~~W~~l~~~~~ 95 (885)
-.++..+++|.||..++.+++ +++|||+||.. .+.+++||+. ++.|.+++.+.
T Consensus 17 ~~~~~l~~lP~~~~~~~~~~~------~~~iyv~gG~~------------------~~~~~~~d~~~~~~~W~~l~~~p- 71 (376)
T PRK14131 17 ANAEQLPDLPVPFKNGTGAID------NNTVYVGLGSA------------------GTSWYKLDLNAPSKGWTKIAAFP- 71 (376)
T ss_pred eecccCCCCCcCccCCeEEEE------CCEEEEEeCCC------------------CCeEEEEECCCCCCCeEECCcCC-
Confidence 356778899999999999988 89999999963 1348899986 47899887542
Q ss_pred CCcccCccEEEEECCEEEEEcCcCC-C----CCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEe
Q 002740 96 PPSPRAAHAAAAVGTMVVFQGGIGP-A----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 170 (885)
Q Consensus 96 ~P~~R~~ha~~~~~~~iyv~GG~~~-~----~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~G 170 (885)
..+|..|++++++++|||+||... . ....+++|+||+.++ +|..+.. ..|.+|.+|+++++.+++||++|
T Consensus 72 -~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~G 146 (376)
T PRK14131 72 -GGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDT--RSPVGLAGHVAVSLHNGKAYITG 146 (376)
T ss_pred -CCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCC--CCCCcccceEEEEeeCCEEEEEC
Confidence 147999999999999999999753 1 134689999999984 5999842 35778888888774556999999
Q ss_pred cCCCC----------------------------------cccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecC
Q 002740 171 GNDGK----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSD 216 (885)
Q Consensus 171 G~~~~----------------------------------~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~ 216 (885)
|.+.. ...+++++||+.++ +|..+.+. |.++..+++++..+
T Consensus 147 G~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~--~W~~~~~~---p~~~~~~~a~v~~~ 221 (376)
T PRK14131 147 GVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTN--QWKNAGES---PFLGTAGSAVVIKG 221 (376)
T ss_pred CCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCC--eeeECCcC---CCCCCCcceEEEEC
Confidence 97542 12578999999999 99998654 55334444555668
Q ss_pred CEEEEEccCCCCCCcccceEEEEc--CCCCeeEEEeCCCCCCCccc--------eeEEEEECCEEEEEcccCCCCCC---
Q 002740 217 GMFLLCGGRDASGAPLADAYGLLM--HRNGQWEWTLAPGVAPSPRY--------QHAAVFVGARLHVTGGALRGGRA--- 283 (885)
Q Consensus 217 ~~l~v~GG~~~~~~~l~dv~~l~~--~~~~~W~w~~~~~~~P~~R~--------~hs~~~~~~~i~V~GG~~~~~~~--- 283 (885)
++||++||....+....++|.++. ..+ +|..++.+ |.+|. ++.+++++++|||+||.......
T Consensus 222 ~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~~~~-p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~ 297 (376)
T PRK14131 222 NKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKLPDL-PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENY 297 (376)
T ss_pred CEEEEEeeeECCCcCChhheEEEecCCCc---ceeecCCC-CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhh
Confidence 899999998655555667776654 333 67777755 44442 33467789999999998642210
Q ss_pred ----------ccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCC-CCCC
Q 002740 284 ----------IEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKG-DILL 352 (885)
Q Consensus 284 ----------~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~-~~~~ 352 (885)
......+++||+++++|+.+..++. +|..+++++++++|||+||... ...+
T Consensus 298 ~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~------------------~r~~~~av~~~~~iyv~GG~~~~~~~~ 359 (376)
T PRK14131 298 QNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQ------------------GLAYGVSVSWNNGVLLIGGETAGGKAV 359 (376)
T ss_pred hcCCcccccCCcceeehheEEecCCcccccCcCCC------------------CccceEEEEeCCEEEEEcCCCCCCcEe
Confidence 0011357899999999999987744 8899999999999999999864 3678
Q ss_pred CcEEEeeCCC
Q 002740 353 DDFLVAENSP 362 (885)
Q Consensus 353 ~D~~~ld~~~ 362 (885)
+|++.++...
T Consensus 360 ~~v~~~~~~~ 369 (376)
T PRK14131 360 SDVTLLSWDG 369 (376)
T ss_pred eeEEEEEEcC
Confidence 8999888654
No 31
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=1.7e-30 Score=306.63 Aligned_cols=252 Identities=13% Similarity=0.123 Sum_probs=212.3
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 74 ~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
...+++||+.+++|..+++ +|.+|..|+++++++.||++||........+++++||+.++ +|..+ +++|.+|
T Consensus 271 ~~~v~~yd~~~~~W~~l~~---mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n--~W~~~---~~m~~~R 342 (557)
T PHA02713 271 NPCILVYNINTMEYSVIST---IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENK--IHVEL---PPMIKNR 342 (557)
T ss_pred CCCEEEEeCCCCeEEECCC---CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCC--eEeeC---CCCcchh
Confidence 3578999999999999874 45789999999999999999997544456789999999995 49988 8899999
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCC----
Q 002740 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG---- 229 (885)
Q Consensus 154 ~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~---- 229 (885)
.+++++++++ +||++||.++...++++++||+.++ +|..+.++ |.+|..|++++ .+++||++||.+...
T Consensus 343 ~~~~~~~~~g-~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~m---p~~r~~~~~~~-~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 343 CRFSLAVIDD-TIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDM---PIALSSYGMCV-LDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred hceeEEEECC-EEEEECCcCCCCCCceEEEEECCCC--eEEECCCC---CcccccccEEE-ECCEEEEEeCCCccccccc
Confidence 9999999987 9999999988778899999999999 99998765 78888887775 578999999986431
Q ss_pred -------------CcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECC
Q 002740 230 -------------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA 296 (885)
Q Consensus 230 -------------~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~ 296 (885)
..++.++.|++.++ +|..++.+ +.+|.++++++++++|||+||..+... ..+.+++||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td---~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~---~~~~ve~Ydp~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNN---IWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKN---VKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCC---eEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCc---cceeEEEecCC
Confidence 13678999999988 88888766 689999999999999999999864321 13468999999
Q ss_pred C-CeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCCCCCcEEEeeCCCCCcCCC
Q 002740 297 A-GVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 297 t-~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~~~~~~~ 368 (885)
+ ++|+.+++++. +|..+++++++++||++||+++. .++..+|..+-+|...
T Consensus 489 ~~~~W~~~~~m~~------------------~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 489 TYNGWELITTTES------------------RLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHI 540 (557)
T ss_pred CCCCeeEccccCc------------------ccccceeEEECCEEEEEeeecce---eehhhcCcccccccch
Confidence 9 89999998854 99999999999999999999883 3566777777776543
No 32
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=310.23 Aligned_cols=252 Identities=12% Similarity=0.119 Sum_probs=213.0
Q ss_pred CCCcccccceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEE
Q 002740 10 APSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTR 89 (885)
Q Consensus 10 ~~~y~~~~~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~ 89 (885)
..+||+.++.|...+++|.+|.+|+++++ +++||++||...... ..+++++||+.+++|..
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l------~~~IYviGG~~~~~~-------------~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIV------DNEIIIAGGYNFNNP-------------SLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEE------CCEEEEEcCCCCCCC-------------ccceEEEEECCCCeEee
Confidence 46799999999999999999999999999 999999999753221 46899999999999998
Q ss_pred ecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEE
Q 002740 90 IRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (885)
Q Consensus 90 l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~ 169 (885)
+++ +|.+|..|++++++++||++||... ....+++++||+.+++ |..+ +++|.+|.+++++++++ +||++
T Consensus 335 ~~~---m~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~--W~~~---~~mp~~r~~~~~~~~~g-~IYvi 404 (557)
T PHA02713 335 LPP---MIKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDK--WKML---PDMPIALSSYGMCVLDQ-YIYII 404 (557)
T ss_pred CCC---CcchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCe--EEEC---CCCCcccccccEEEECC-EEEEE
Confidence 874 4589999999999999999999753 3457889999999954 9998 88999999999988876 99999
Q ss_pred ecCCCC------------------cccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCc
Q 002740 170 SGNDGK------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 170 GG~~~~------------------~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~ 231 (885)
||.++. ..++.+++||++++ +|+.+.++ |.+|..|++++ .+++||++||.+.....
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m---~~~r~~~~~~~-~~~~IYv~GG~~~~~~~ 478 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNF---WTGTIRPGVVS-HKDDIYVVCDIKDEKNV 478 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCC---CcccccCcEEE-ECCEEEEEeCCCCCCcc
Confidence 998642 13678999999999 99998765 77888777664 56789999998754333
Q ss_pred ccceEEEEcCC-CCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCc
Q 002740 232 LADAYGLLMHR-NGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLV 307 (885)
Q Consensus 232 l~dv~~l~~~~-~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~ 307 (885)
.+.++.|++.+ + +|..++.+ |.+|..+++++++++|||+||+++. .++++||+.+++|+.+.+..
T Consensus 479 ~~~ve~Ydp~~~~---~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~-------~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 479 KTCIFRYNTNTYN---GWELITTT-ESRLSALHTILHDNTIMMLHCYESY-------MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ceeEEEecCCCCC---CeeEcccc-CcccccceeEEECCEEEEEeeecce-------eehhhcCcccccccchhhhc
Confidence 45579999998 6 67777665 7999999999999999999998652 36899999999999998763
No 33
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=6.5e-30 Score=285.90 Aligned_cols=262 Identities=24% Similarity=0.378 Sum_probs=205.9
Q ss_pred CCCcEEEecCCC-CCCcccCccEEEEECCEEEEEcCcCC-CCCccccEEEEEecCCccEEEEEeecCCCCC-CccccEEE
Q 002740 83 LTRKWTRIRPAG-EPPSPRAAHAAAAVGTMVVFQGGIGP-AGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG-PRYGHVMD 159 (885)
Q Consensus 83 ~t~~W~~l~~~~-~~P~~R~~ha~~~~~~~iyv~GG~~~-~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~-~R~~h~~~ 159 (885)
....|.++...+ ..|.||..|++++++++|||+||... .....+++|+||+.++ +|..+...+..|. .+.+|+++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~ 82 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMV 82 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEE
Confidence 466799998754 47899999999999999999999753 2344689999999995 5998855444444 34578888
Q ss_pred EECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCC--CCCCccccceEEEecCCEEEEEccCCCCC-----Ccc
Q 002740 160 LVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEG--DRPSARMYATASARSDGMFLLCGGRDASG-----APL 232 (885)
Q Consensus 160 ~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g--~~P~~r~~hsa~~~~~~~l~v~GG~~~~~-----~~l 232 (885)
++++ +||+|||.+....++++|+||+.++ +|+.+..+. ..|.+|..|++++ .+++|||+||.+..+ ..+
T Consensus 83 ~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~ 158 (341)
T PLN02153 83 AVGT-KLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERF 158 (341)
T ss_pred EECC-EEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCccc
Confidence 8886 8999999988778899999999999 999987542 2378899998875 567899999986432 246
Q ss_pred cceEEEEcCCCCeeEEEeCCC--CCCCccceeEEEEECCEEEEEcccCCC----CCCccCCCcEEEEECCCCeEEEccCC
Q 002740 233 ADAYGLLMHRNGQWEWTLAPG--VAPSPRYQHAAVFVGARLHVTGGALRG----GRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 233 ~dv~~l~~~~~~~W~w~~~~~--~~P~~R~~hs~~~~~~~i~V~GG~~~~----~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
++++.|+..++ +|..++. .+|.+|.+|+++.++++|||+||.... +......+++++||+.+++|++++..
T Consensus 159 ~~v~~yd~~~~---~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 159 RTIEAYNIADG---KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred ceEEEEECCCC---eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 78999999877 6666654 346899999999999999999997521 11112257899999999999999864
Q ss_pred cccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCC---------CCCCCCcEEEeeCCCCCcCCC
Q 002740 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK---------GDILLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~---------~~~~~~D~~~ld~~~~~~~~~ 368 (885)
.. .|.+|..|++++++++||||||.. .....+|+|.+|..+..+...
T Consensus 236 g~---------------~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 236 GA---------------KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred CC---------------CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 32 255899999999999999999974 234568999999988777543
No 34
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=9e-30 Score=282.71 Aligned_cols=274 Identities=16% Similarity=0.208 Sum_probs=207.2
Q ss_pred CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCC--CcEEEecCCCCCCcccCccEE
Q 002740 28 GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPSPRAAHAA 105 (885)
Q Consensus 28 ~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t--~~W~~l~~~~~~P~~R~~ha~ 105 (885)
..+.+|.++++ ++.|||+||........ ....-...++++|+|+... .+|..++ ++|.+|..|++
T Consensus 2 ~~~~g~~~~~~------~~~l~v~GG~~~~~~~~----~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~ 68 (323)
T TIGR03548 2 LGVAGCYAGII------GDYILVAGGCNFPEDPL----AEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGAS 68 (323)
T ss_pred CceeeEeeeEE------CCEEEEeeccCCCCCch----hhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEE
Confidence 46778999999 99999999997653110 0001123678999996333 2698876 45688998999
Q ss_pred EEECCEEEEEcCcCCCCCccccEEEEEecCCcc--EEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEE
Q 002740 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKF--KWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA 183 (885)
Q Consensus 106 ~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~--~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~ 183 (885)
+++++.||++||... ...++++|+||+.++++ .|..+ +++|.+|..|+++++++ +|||+||......++++|+
T Consensus 69 ~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~---~~lp~~~~~~~~~~~~~-~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 69 VSVENGIYYIGGSNS-SERFSSVYRITLDESKEELICETI---GNLPFTFENGSACYKDG-TLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred EEECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEc---CCCCcCccCceEEEECC-EEEEEeCcCCCccCceEEE
Confidence 999999999999753 34578999999998663 24555 88999999999988876 9999999876667899999
Q ss_pred EeCCCCCeeEEEcCCCCCCC-CccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCC----CCCc
Q 002740 184 LDTAQKPYVWQRLNPEGDRP-SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGV----APSP 258 (885)
Q Consensus 184 ~d~~t~~~~W~~l~~~g~~P-~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~----~P~~ 258 (885)
||+.++ +|+++.+. | .+|..|+++ ..+++||++||.+.. ...|++.|+..++ +|..++.+ .|.+
T Consensus 144 yd~~~~--~W~~~~~~---p~~~r~~~~~~-~~~~~iYv~GG~~~~--~~~~~~~yd~~~~---~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 144 FNLETQ--EWFELPDF---PGEPRVQPVCV-KLQNELYVFGGGSNI--AYTDGYKYSPKKN---QWQKVADPTTDSEPIS 212 (323)
T ss_pred EcCCCC--CeeECCCC---CCCCCCcceEE-EECCEEEEEcCCCCc--cccceEEEecCCC---eeEECCCCCCCCCcee
Confidence 999999 99998754 3 356666654 467799999998643 3568899999987 66676543 2344
Q ss_pred cceeEEEEE-CCEEEEEcccCCCCC----------------------------CccCCCcEEEEECCCCeEEEccCCccc
Q 002740 259 RYQHAAVFV-GARLHVTGGALRGGR----------------------------AIEGEAAVAVLDTAAGVWLDRNGLVTS 309 (885)
Q Consensus 259 R~~hs~~~~-~~~i~V~GG~~~~~~----------------------------~~~~~~~v~~yD~~t~~W~~v~~~~~~ 309 (885)
+..++++.+ +++|||+||.+.... .....+++++||+.+++|+.++.++.
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~- 291 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF- 291 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc-
Confidence 445555444 789999999864210 01113679999999999999987642
Q ss_pred CCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCC
Q 002740 310 SRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK 347 (885)
Q Consensus 310 ~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~ 347 (885)
.+|..++++.++++||++||..
T Consensus 292 ----------------~~r~~~~~~~~~~~iyv~GG~~ 313 (323)
T TIGR03548 292 ----------------FARCGAALLLTGNNIFSINGEL 313 (323)
T ss_pred ----------------cccCchheEEECCEEEEEeccc
Confidence 2899999999999999999974
No 35
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.97 E-value=9.8e-31 Score=275.20 Aligned_cols=218 Identities=49% Similarity=0.779 Sum_probs=175.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhh
Q 002740 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINAL 663 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ 663 (885)
+|||||||++.+|.++|+.++..+.+ .+||||||||||+.+.||+.++++++.. |.++++|+||||.+.++..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d------~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~ 73 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPND------KLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFL 73 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCC------EEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhh
Confidence 58999999999999999999986655 8999999999999999999999999887 8899999999999998877
Q ss_pred cCChHHHH-----HHhCCCcchhhhhhhhhhccCCceEEEEeC-eEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchh
Q 002740 664 FGFRLECI-----ERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILM 737 (885)
Q Consensus 664 ~gf~~e~~-----~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~-~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~ 737 (885)
.++..+.. ..........++..+.++|..||+++.++. +++|||||+.|.....+++. ..+ ..+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~------~~~-~~~~~~ 146 (225)
T cd00144 74 YGFYDEDEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK------EEP-EDQLPE 146 (225)
T ss_pred cCCcchhhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh------cCc-ccccce
Confidence 77654421 111111234577888899999999999986 89999999999976655544 111 123678
Q ss_pred ccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCe
Q 002740 738 DLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNA 817 (885)
Q Consensus 738 dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ 817 (885)
+++|++|.... .....+.|+. |+++.+.|++.++.++|||||+++..|+.....++++||+|++.|++..+|.
T Consensus 147 ~~lw~r~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~~~ 219 (225)
T cd00144 147 DLLWSDPLELP--GGFGSSRRGG-----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGGNK 219 (225)
T ss_pred eeeecCCCCCC--CCCcCCCCCC-----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCCcc
Confidence 99999997532 2223334433 8999999999999999999999999998777889999999999999877777
Q ss_pred EEEEE
Q 002740 818 GAILV 822 (885)
Q Consensus 818 ga~l~ 822 (885)
.+++.
T Consensus 220 l~~~~ 224 (225)
T cd00144 220 LAALV 224 (225)
T ss_pred EEEEe
Confidence 77654
No 36
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=283.00 Aligned_cols=253 Identities=31% Similarity=0.468 Sum_probs=221.0
Q ss_pred cCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccc-cEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEE
Q 002740 91 RPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTD-DLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSV 169 (885)
Q Consensus 91 ~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~-dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~ 169 (885)
...+..|.+|+.|+++.+++++|||||.+......+ |+|+||+.+ ..|.....++..|.+|++|+++.+++ +||+|
T Consensus 52 ~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~p~~r~g~~~~~~~~-~l~lf 128 (482)
T KOG0379|consen 52 DVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDEPSPRYGHSLSAVGD-KLYLF 128 (482)
T ss_pred ccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCCCCcccceeEEEECC-eEEEE
Confidence 355677899999999999999999999865544444 699999999 45999999999999999999999996 99999
Q ss_pred ecCCC-CcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEE
Q 002740 170 SGNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEW 248 (885)
Q Consensus 170 GG~~~-~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w 248 (885)
||.+. ...++++++||+.|+ +|..+.+.+.+|++|.+|+++++. .++|||||.+..+..++|+|.|+..+. +|..
T Consensus 129 GG~~~~~~~~~~l~~~d~~t~--~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~-~W~~ 204 (482)
T KOG0379|consen 129 GGTDKKYRNLNELHSLDLSTR--TWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETS-TWSE 204 (482)
T ss_pred ccccCCCCChhheEeccCCCC--cEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccc-ccee
Confidence 99985 667899999999999 999999999999999999999876 799999999888778999999999977 4777
Q ss_pred EeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccc
Q 002740 249 TLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRR 328 (885)
Q Consensus 249 ~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R 328 (885)
..+.+..|.||++|+++.++++++||||...+.. .++++|+||+.+.+|..+..... .|.+|
T Consensus 205 ~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~---~l~D~~~ldl~~~~W~~~~~~g~---------------~p~~R 266 (482)
T KOG0379|consen 205 LDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDV---YLNDVHILDLSTWEWKLLPTGGD---------------LPSPR 266 (482)
T ss_pred cccCCCCCCCCCCceEEEECCeEEEEeccccCCc---eecceEeeecccceeeeccccCC---------------CCCCc
Confidence 7778999999999999999999999999873332 37899999999999997775543 36799
Q ss_pred cceEEEEECCEEEEEcCCCCC-C-CCCcEEEeeCCCCCcCCC
Q 002740 329 CRHASASIGVRIYIYGGLKGD-I-LLDDFLVAENSPFQSDVN 368 (885)
Q Consensus 329 ~~hs~~~~~~~IyI~GG~~~~-~-~~~D~~~ld~~~~~~~~~ 368 (885)
.+|+.+..+.+++|+||.... . .+.|+|.|+..+..+...
T Consensus 267 ~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 267 SGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred ceeeeEEECCEEEEEcCCcccccccccccccccccccceeee
Confidence 999999999999999998774 4 799999999997776544
No 37
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=5.5e-28 Score=286.69 Aligned_cols=254 Identities=17% Similarity=0.197 Sum_probs=209.3
Q ss_pred CCcccccceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEe
Q 002740 11 PSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRI 90 (885)
Q Consensus 11 ~~y~~~~~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l 90 (885)
.+|+..+.+|....+.|. +..|+++++ +++||++||...... ..+++++||+.+++|..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~lyv~GG~~~~~~-------------~~~~v~~yd~~~~~W~~~ 326 (534)
T PHA03098 267 ITNYSPLSEINTIIDIHY-VYCFGSVVL------NNVIYFIGGMNKNNL-------------SVNSVVSYDTKTKSWNKV 326 (534)
T ss_pred eecchhhhhcccccCccc-cccceEEEE------CCEEEEECCCcCCCC-------------eeccEEEEeCCCCeeeEC
Confidence 357777888988876664 445788888 899999999975432 468999999999999987
Q ss_pred cCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEe
Q 002740 91 RPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVS 170 (885)
Q Consensus 91 ~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~G 170 (885)
+. +|.+|..|++++++++||++||.. .....+++++||+.+++ |..+ .++|.+|++|+++.+++ ++|++|
T Consensus 327 ~~---~~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~--W~~~---~~lp~~r~~~~~~~~~~-~iYv~G 396 (534)
T PHA03098 327 PE---LIYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESK--WREE---PPLIFPRYNPCVVNVNN-LIYVIG 396 (534)
T ss_pred CC---CCcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCCc--eeeC---CCcCcCCccceEEEECC-EEEEEC
Confidence 74 457899999999999999999986 44567899999999855 9987 78999999999988876 999999
Q ss_pred cCCC-CcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCC--cccceEEEEcCCCCeeE
Q 002740 171 GNDG-KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA--PLADAYGLLMHRNGQWE 247 (885)
Q Consensus 171 G~~~-~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~--~l~dv~~l~~~~~~~W~ 247 (885)
|... ...++++++||+.++ +|..+.+. |.+|..|++++ .++++|++||.+.... .+++++.|+..++ +
T Consensus 397 G~~~~~~~~~~v~~yd~~t~--~W~~~~~~---p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~---~ 467 (534)
T PHA03098 397 GISKNDELLKTVECFSLNTN--KWSKGSPL---PISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN---K 467 (534)
T ss_pred CcCCCCcccceEEEEeCCCC--eeeecCCC---CccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC---c
Confidence 9643 345789999999999 99998654 78888888765 5678999999864432 3677999999988 7
Q ss_pred EEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcc
Q 002740 248 WTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (885)
Q Consensus 248 w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (885)
|..++.+ |.+|..++++.++++|||+||...... .+++++||+++++|..+...|.
T Consensus 468 W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 468 WTELSSL-NFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred eeeCCCC-CcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCCcc
Confidence 8888655 688999999999999999999875432 4689999999999999987644
No 38
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=9.7e-28 Score=284.62 Aligned_cols=254 Identities=15% Similarity=0.224 Sum_probs=212.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCcc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~ 154 (885)
..+..|+..+++|..++.. | .+..|+++++++.||++||........+++++||+.+ .+|..+ +++|.+|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~--~~W~~~---~~~~~~R~ 334 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT--KSWNKV---PELIYPRK 334 (534)
T ss_pred ceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCC--CeeeEC---CCCCcccc
Confidence 4456788888899977532 2 2556799999999999999876666778999999999 459888 78899999
Q ss_pred ccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccc
Q 002740 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (885)
Q Consensus 155 ~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~d 234 (885)
+|+++++++ ++|++||.+....++++++||+.++ +|+.+.+. |.+|..|++++ .++++|++||.......+++
T Consensus 335 ~~~~~~~~~-~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~l---p~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 335 NPGVTVFNN-RIYVIGGIYNSISLNTVESWKPGES--KWREEPPL---IFPRYNPCVVN-VNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cceEEEECC-EEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCc---CcCCccceEEE-ECCEEEEECCcCCCCcccce
Confidence 999988876 8999999987778899999999999 99988654 78898888865 57799999998766666899
Q ss_pred eEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCC
Q 002740 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSK 314 (885)
Q Consensus 235 v~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~ 314 (885)
++.|+..++ +|...+.+ |.+|++|+++.++++|||+||...... ....+.+++||+.+++|+.++.++.
T Consensus 408 v~~yd~~t~---~W~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~------ 476 (534)
T PHA03098 408 VECFSLNTN---KWSKGSPL-PISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSLNF------ 476 (534)
T ss_pred EEEEeCCCC---eeeecCCC-CccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCCCc------
Confidence 999999877 77787655 789999999999999999999864432 1124569999999999999987743
Q ss_pred CCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCCCCCcEEEeeCCCCCcCC
Q 002740 315 GHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDV 367 (885)
Q Consensus 315 ~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~~~~~~ 367 (885)
+|..++++.++++|||+||.++....++++.+|..+..|..
T Consensus 477 ------------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 477 ------------PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred ------------ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 88999999999999999999887778999999988877753
No 39
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=2.2e-26 Score=255.63 Aligned_cols=230 Identities=17% Similarity=0.253 Sum_probs=185.5
Q ss_pred eEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEE-EecCCCCCC
Q 002740 19 YWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT-RIRPAGEPP 97 (885)
Q Consensus 19 ~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~-~l~~~~~~P 97 (885)
+|...+++|.+|..|+++++ +++||++||..... ..+++++||+.+++|. ......++|
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~------~~~lyviGG~~~~~--------------~~~~v~~~d~~~~~w~~~~~~~~~lp 111 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSV------ENGIYYIGGSNSSE--------------RFSSVYRITLDESKEELICETIGNLP 111 (323)
T ss_pred eEEEcccCCccccceEEEEE------CCEEEEEcCCCCCC--------------CceeEEEEEEcCCceeeeeeEcCCCC
Confidence 79999999999999999999 88999999986433 4689999999999983 223344677
Q ss_pred cccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCC-CCccccEEEEECCcEEEEEecCCCCc
Q 002740 98 SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGNDGKR 176 (885)
Q Consensus 98 ~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p-~~R~~h~~~~~~~~~lyv~GG~~~~~ 176 (885)
.+|..|++++++++|||+||.. .....+++++||+.+++ |+.+ .++| .+|..|+++++++ +||||||.++.
T Consensus 112 ~~~~~~~~~~~~~~iYv~GG~~-~~~~~~~v~~yd~~~~~--W~~~---~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~- 183 (323)
T TIGR03548 112 FTFENGSACYKDGTLYVGGGNR-NGKPSNKSYLFNLETQE--WFEL---PDFPGEPRVQPVCVKLQN-ELYVFGGGSNI- 183 (323)
T ss_pred cCccCceEEEECCEEEEEeCcC-CCccCceEEEEcCCCCC--eeEC---CCCCCCCCCcceEEEECC-EEEEEcCCCCc-
Confidence 8999999999999999999974 33457899999999855 9998 5566 4788888877776 89999998754
Q ss_pred ccCcEEEEeCCCCCeeEEEcCCCC--CCCCccccceEEEecCCEEEEEccCCCCC-------------------------
Q 002740 177 VLSDAWALDTAQKPYVWQRLNPEG--DRPSARMYATASARSDGMFLLCGGRDASG------------------------- 229 (885)
Q Consensus 177 ~~ndv~~~d~~t~~~~W~~l~~~g--~~P~~r~~hsa~~~~~~~l~v~GG~~~~~------------------------- 229 (885)
...++++||++++ +|+.+.++. ..|..+..++++++.+++||++||.+...
T Consensus 184 ~~~~~~~yd~~~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (323)
T TIGR03548 184 AYTDGYKYSPKKN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFL 261 (323)
T ss_pred cccceEEEecCCC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhC
Confidence 3467999999999 999998753 23455556777777889999999986431
Q ss_pred ------CcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCC
Q 002740 230 ------APLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGG 281 (885)
Q Consensus 230 ------~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~ 281 (885)
...++++.||..++ +|..++..+..+|.+++++.++++|||+||....+
T Consensus 262 ~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 262 KPPEWYNWNRKILIYNVRTG---KWKSIGNSPFFARCGAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCccccCcCceEEEEECCCC---eeeEcccccccccCchheEEECCEEEEEeccccCC
Confidence 11367999999988 78888765446899999999999999999976554
No 40
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=249.78 Aligned_cols=219 Identities=30% Similarity=0.500 Sum_probs=186.5
Q ss_pred CCCCcccccceEecC--CCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCc
Q 002740 9 PAPSYRTLETYWDTD--EDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK 86 (885)
Q Consensus 9 ~~~~y~~~~~~w~~~--~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~ 86 (885)
.-.+|+...+.|+.. +..|.||++|.+++++ .+.+|||||-...-... ..--+.|+|.||+.+++
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~-----s~~l~~fGGEfaSPnq~--------qF~HYkD~W~fd~~trk 165 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVP-----SNILWLFGGEFASPNQE--------QFHHYKDLWLFDLKTRK 165 (521)
T ss_pred eeeEEeccccceeEeccCCCcCCCccceeEEec-----cCeEEEeccccCCcchh--------hhhhhhheeeeeeccch
Confidence 357899999999854 6789999999999995 35999999977544321 11247899999999999
Q ss_pred EEEecCCCCCCcccCccEEEEECCEEEEEcCcC---CCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECC
Q 002740 87 WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG---PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ 163 (885)
Q Consensus 87 W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~---~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~ 163 (885)
|+++...| -|+||++|-+++..+++++|||.. ....++||||+||+++ ++|.++.+.|..|.||+||.+++..+
T Consensus 166 weql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt--ykW~Klepsga~PtpRSGcq~~vtpq 242 (521)
T KOG1230|consen 166 WEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT--YKWSKLEPSGAGPTPRSGCQFSVTPQ 242 (521)
T ss_pred heeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc--eeeeeccCCCCCCCCCCcceEEecCC
Confidence 99998776 779999999999999999999974 4457789999999999 88999999888999999999999967
Q ss_pred cEEEEEecCCC---------CcccCcEEEEeCCC---CCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCC----
Q 002740 164 RYLVSVSGNDG---------KRVLSDAWALDTAQ---KPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA---- 227 (885)
Q Consensus 164 ~~lyv~GG~~~---------~~~~ndv~~~d~~t---~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~---- 227 (885)
+.|||+||+.. ....+|+|.+++++ ..|.|.++.+.|-.|.||.+.++++..+++-++|||..-
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEE 322 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceeccccc
Confidence 78999999853 34679999999977 238999999999999999999999999999999999732
Q ss_pred ----CCCcccceEEEEcCCC
Q 002740 228 ----SGAPLADAYGLLMHRN 243 (885)
Q Consensus 228 ----~~~~l~dv~~l~~~~~ 243 (885)
.+..+||+|.|+...+
T Consensus 323 eEsl~g~F~NDLy~fdlt~n 342 (521)
T KOG1230|consen 323 EESLSGEFFNDLYFFDLTRN 342 (521)
T ss_pred chhhhhhhhhhhhheecccc
Confidence 2457899999988766
No 41
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=4e-25 Score=250.26 Aligned_cols=257 Identities=19% Similarity=0.287 Sum_probs=189.0
Q ss_pred Ccccc--cceEecCCCCC-CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEE
Q 002740 12 SYRTL--ETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (885)
Q Consensus 12 ~y~~~--~~~w~~~~~~P-~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~ 88 (885)
.||.. ++.|.+.+++| .+|.+|+++.+ +++||||||........ ....++++|+||+.+++|+
T Consensus 54 ~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~------~~~IYV~GG~~~~~~~~--------~~~~~~~v~~YD~~~n~W~ 119 (376)
T PRK14131 54 KLDLNAPSKGWTKIAAFPGGPREQAVAAFI------DGKLYVFGGIGKTNSEG--------SPQVFDDVYKYDPKTNSWQ 119 (376)
T ss_pred EEECCCCCCCeEECCcCCCCCcccceEEEE------CCEEEEEcCCCCCCCCC--------ceeEcccEEEEeCCCCEEE
Confidence 45543 57899999988 58999999999 89999999987521100 0115789999999999999
Q ss_pred EecCCCCCCcccCccEEEE-ECCEEEEEcCcCCCC---------------------------------CccccEEEEEec
Q 002740 89 RIRPAGEPPSPRAAHAAAA-VGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDLT 134 (885)
Q Consensus 89 ~l~~~~~~P~~R~~ha~~~-~~~~iyv~GG~~~~~---------------------------------~~~~dl~~~D~~ 134 (885)
+++.. .|.+|.+|++++ .+++||++||..... ...+++++||+.
T Consensus 120 ~~~~~--~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~ 197 (376)
T PRK14131 120 KLDTR--SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPS 197 (376)
T ss_pred eCCCC--CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECC
Confidence 98742 467788888887 799999999974210 124789999999
Q ss_pred CCccEEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCc-ccCcEEE--EeCCCCCeeEEEcCCCCCCCCccc---
Q 002740 135 NDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWA--LDTAQKPYVWQRLNPEGDRPSARM--- 207 (885)
Q Consensus 135 ~~~~~W~~l~~~~~~p~-~R~~h~~~~~~~~~lyv~GG~~~~~-~~ndv~~--~d~~t~~~~W~~l~~~g~~P~~r~--- 207 (885)
+++ |..+ +++|. +|.+|+++.+++ +|||+||..... ...++|. ||++++ +|+++.++ |.+|.
T Consensus 198 t~~--W~~~---~~~p~~~~~~~a~v~~~~-~iYv~GG~~~~~~~~~~~~~~~~~~~~~--~W~~~~~~---p~~~~~~~ 266 (376)
T PRK14131 198 TNQ--WKNA---GESPFLGTAGSAVVIKGN-KLWLINGEIKPGLRTDAVKQGKFTGNNL--KWQKLPDL---PPAPGGSS 266 (376)
T ss_pred CCe--eeEC---CcCCCCCCCcceEEEECC-EEEEEeeeECCCcCChhheEEEecCCCc--ceeecCCC---CCCCcCCc
Confidence 955 9987 67775 788888877775 999999975432 3445554 566777 99999866 44442
Q ss_pred ----cceEEEecCCEEEEEccCCCCCC----------------cccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE
Q 002740 208 ----YATASARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV 267 (885)
Q Consensus 208 ----~hsa~~~~~~~l~v~GG~~~~~~----------------~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~ 267 (885)
.+..++..+++||++||.+.... ....+..|+..++ +|..+..+ |.+|..++++.+
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~r~~~~av~~ 342 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG---KWQKVGEL-PQGLAYGVSVSW 342 (376)
T ss_pred CCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC---cccccCcC-CCCccceEEEEe
Confidence 22334557889999999753211 1123557888776 67777654 789999999999
Q ss_pred CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEE
Q 002740 268 GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLD 302 (885)
Q Consensus 268 ~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~ 302 (885)
+++|||+||....+. ..+++++|+.+.+.|..
T Consensus 343 ~~~iyv~GG~~~~~~---~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 343 NNGVLLIGGETAGGK---AVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CCEEEEEcCCCCCCc---EeeeEEEEEEcCCEEEE
Confidence 999999999765432 26789999999888765
No 42
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=9.6e-25 Score=254.28 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=174.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~ 124 (885)
++.||++||..... ..+++++||+.+++|..++++ |.+|..+++++++++||++||...
T Consensus 271 ~~~lyviGG~~~~~--------------~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~---- 329 (480)
T PHA02790 271 GEVVYLIGGWMNNE--------------IHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPN---- 329 (480)
T ss_pred CCEEEEEcCCCCCC--------------cCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCC----
Confidence 88999999985432 468899999999999998854 588999999999999999999742
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
.+++++||+.++ +|..+ +++|.+|.+|+++++++ +||++||.++. .+.+++||+.++ +|+.++++ |.
T Consensus 330 ~~sve~ydp~~n--~W~~~---~~l~~~r~~~~~~~~~g-~IYviGG~~~~--~~~ve~ydp~~~--~W~~~~~m---~~ 396 (480)
T PHA02790 330 PTSVERWFHGDA--AWVNM---PSLLKPRCNPAVASINN-VIYVIGGHSET--DTTTEYLLPNHD--QWQFGPST---YY 396 (480)
T ss_pred CCceEEEECCCC--eEEEC---CCCCCCCcccEEEEECC-EEEEecCcCCC--CccEEEEeCCCC--EEEeCCCC---CC
Confidence 256999999884 59988 78999999999988886 99999998653 477999999999 99998765 78
Q ss_pred ccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002740 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (885)
+|..|++++ .+++||++||. +..|+..++ +|..++.+ |.+|..+++++++++|||+||+.....
T Consensus 397 ~r~~~~~~~-~~~~IYv~GG~---------~e~ydp~~~---~W~~~~~m-~~~r~~~~~~v~~~~IYviGG~~~~~~-- 460 (480)
T PHA02790 397 PHYKSCALV-FGRRLFLVGRN---------AEFYCESSN---TWTLIDDP-IYPRDNPELIIVDNKLLLIGGFYRGSY-- 460 (480)
T ss_pred ccccceEEE-ECCEEEEECCc---------eEEecCCCC---cEeEcCCC-CCCccccEEEEECCEEEEECCcCCCcc--
Confidence 888887765 67799999983 456777777 77787666 789999999999999999999864321
Q ss_pred cCCCcEEEEECCCCeEEEcc
Q 002740 285 EGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~ 304 (885)
.+++++||+++++|+...
T Consensus 461 --~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 461 --IDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred --cceEEEEECCCCeEEecC
Confidence 467999999999998764
No 43
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.93 E-value=1.1e-24 Score=244.21 Aligned_cols=248 Identities=20% Similarity=0.329 Sum_probs=182.2
Q ss_pred CCccc--ccceEecCCCCC-CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcE
Q 002740 11 PSYRT--LETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW 87 (885)
Q Consensus 11 ~~y~~--~~~~w~~~~~~P-~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W 87 (885)
..||. .+++|...+++| .+|.+|+++++ +++||++||........ ....++++++||+.+++|
T Consensus 32 ~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~------~~~iYv~GG~~~~~~~~--------~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 32 YKLDLKKPSKGWQKIADFPGGPRNQAVAAAI------DGKLYVFGGIGKANSEG--------SPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred EEEECCCCCCCceECCCCCCCCcccceEEEE------CCEEEEEeCCCCCCCCC--------cceecccEEEEECCCCEE
Confidence 34553 567899999999 59999999999 89999999986432100 011468999999999999
Q ss_pred EEecCCCCCCcccCccEEE-EECCEEEEEcCcCCCC---------------------------------CccccEEEEEe
Q 002740 88 TRIRPAGEPPSPRAAHAAA-AVGTMVVFQGGIGPAG---------------------------------HSTDDLYVLDL 133 (885)
Q Consensus 88 ~~l~~~~~~P~~R~~ha~~-~~~~~iyv~GG~~~~~---------------------------------~~~~dl~~~D~ 133 (885)
++++. ..|.+|.+|+++ +++++||++||..... ...+++++||+
T Consensus 98 ~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp 175 (346)
T TIGR03547 98 QKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDP 175 (346)
T ss_pred ecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEEC
Confidence 99873 356778888777 6899999999975210 12478999999
Q ss_pred cCCccEEEEEeecCCCCC-CccccEEEEECCcEEEEEecCCCCc-ccCcEEEEeC--CCCCeeEEEcCCCCCCCCcc---
Q 002740 134 TNDKFKWHRVVVQGQGPG-PRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDT--AQKPYVWQRLNPEGDRPSAR--- 206 (885)
Q Consensus 134 ~~~~~~W~~l~~~~~~p~-~R~~h~~~~~~~~~lyv~GG~~~~~-~~ndv~~~d~--~t~~~~W~~l~~~g~~P~~r--- 206 (885)
.+++ |..+ +++|. +|.+++++++++ +|||+||..... ...+++.|++ .++ +|+.+.++ |.+|
T Consensus 176 ~t~~--W~~~---~~~p~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~y~~~~~~~--~W~~~~~m---~~~r~~~ 244 (346)
T TIGR03547 176 STNQ--WRNL---GENPFLGTAGSAIVHKGN-KLLLINGEIKPGLRTAEVKQYLFTGGKL--EWNKLPPL---PPPKSSS 244 (346)
T ss_pred CCCc--eeEC---ccCCCCcCCCceEEEECC-EEEEEeeeeCCCccchheEEEEecCCCc--eeeecCCC---CCCCCCc
Confidence 9955 9998 67775 688888888876 999999986433 2345776665 555 99999776 3333
Q ss_pred ----ccceEEEecCCEEEEEccCCCCCC----------------cccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEE
Q 002740 207 ----MYATASARSDGMFLLCGGRDASGA----------------PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVF 266 (885)
Q Consensus 207 ----~~hsa~~~~~~~l~v~GG~~~~~~----------------~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~ 266 (885)
..|+++ ..+++||++||.+.... .+..+..|+...+ +|..+..+ |.+|..++++.
T Consensus 245 ~~~~~~~~a~-~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~l-p~~~~~~~~~~ 319 (346)
T TIGR03547 245 QEGLAGAFAG-ISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGKL-PQGLAYGVSVS 319 (346)
T ss_pred cccccEEeee-EECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCCC-CCCceeeEEEE
Confidence 244333 46889999999853210 1234667777777 77777665 78899999889
Q ss_pred ECCEEEEEcccCCCCCCccCCCcEEEE
Q 002740 267 VGARLHVTGGALRGGRAIEGEAAVAVL 293 (885)
Q Consensus 267 ~~~~i~V~GG~~~~~~~~~~~~~v~~y 293 (885)
++++|||+||....+.. .++|+.|
T Consensus 320 ~~~~iyv~GG~~~~~~~---~~~v~~~ 343 (346)
T TIGR03547 320 WNNGVLLIGGENSGGKA---VTDVYLL 343 (346)
T ss_pred cCCEEEEEeccCCCCCE---eeeEEEE
Confidence 99999999998765432 4566655
No 44
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.9e-25 Score=240.55 Aligned_cols=260 Identities=25% Similarity=0.412 Sum_probs=209.9
Q ss_pred CCcccccceEe---cCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcE
Q 002740 11 PSYRTLETYWD---TDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKW 87 (885)
Q Consensus 11 ~~y~~~~~~w~---~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W 87 (885)
-.|+..+++|- -.+++|.+-..|..++. +.+||+|||+..-+. .+||+|-+......|
T Consensus 60 HvYNTatnqWf~PavrGDiPpgcAA~Gfvcd------GtrilvFGGMvEYGk-------------YsNdLYELQasRWeW 120 (830)
T KOG4152|consen 60 HVYNTATNQWFAPAVRGDIPPGCAAFGFVCD------GTRILVFGGMVEYGK-------------YSNDLYELQASRWEW 120 (830)
T ss_pred hhhccccceeecchhcCCCCCchhhcceEec------CceEEEEccEeeecc-------------ccchHHHhhhhhhhH
Confidence 46899999996 34789999999999999 899999999998775 689999988877889
Q ss_pred EEecC----CCCCCcccCccEEEEECCEEEEEcCcCCC--------CCccccEEEEEecC--CccEEEEEeecCCCCCCc
Q 002740 88 TRIRP----AGEPPSPRAAHAAAAVGTMVVFQGGIGPA--------GHSTDDLYVLDLTN--DKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 88 ~~l~~----~~~~P~~R~~ha~~~~~~~iyv~GG~~~~--------~~~~~dl~~~D~~~--~~~~W~~l~~~~~~p~~R 153 (885)
+++.+ .|.+|.||.+|+...++++.|+|||...+ .++++|+|.+++.- .-.-|....+.|..|.+|
T Consensus 121 krlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pR 200 (830)
T KOG4152|consen 121 KRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPR 200 (830)
T ss_pred hhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCc
Confidence 99854 45689999999999999999999996422 26789999999983 335699999999999999
Q ss_pred cccEEEEE-----CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCC-
Q 002740 154 YGHVMDLV-----SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA- 227 (885)
Q Consensus 154 ~~h~~~~~-----~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~- 227 (885)
-.|+++++ +..++|||||.++. .+.|+|.+|+++- .|.+....|..|.||.-|++..+.| +||||||+-.
T Consensus 201 ESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl--~W~kp~~~G~~PlPRSLHsa~~IGn-KMyvfGGWVPl 276 (830)
T KOG4152|consen 201 ESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTL--TWNKPSLSGVAPLPRSLHSATTIGN-KMYVFGGWVPL 276 (830)
T ss_pred ccceeEEEEeccCCcceEEEEcccccc-cccceeEEeccee--ecccccccCCCCCCcccccceeecc-eeEEecceeee
Confidence 99999988 23489999998764 6899999999997 9999999999999999999998766 7999999721
Q ss_pred ------------CCCcccceEEEEcCCCCeeEEEeCC------CCCCCccceeEEEEECCEEEEEcccCCCCCCc---cC
Q 002740 228 ------------SGAPLADAYGLLMHRNGQWEWTLAP------GVAPSPRYQHAAVFVGARLHVTGGALRGGRAI---EG 286 (885)
Q Consensus 228 ------------~~~~l~dv~~l~~~~~~~W~w~~~~------~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~---~~ 286 (885)
.+...+.+-.++..+. .|..+- ...|.+|.+|+++.++.+||+.-|+++--+.- -.
T Consensus 277 ~~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVC 353 (830)
T KOG4152|consen 277 VMDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVC 353 (830)
T ss_pred eccccccccccceeeeccceeeeeecch---heeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccc
Confidence 1233444556666655 555432 33689999999999999999999987532111 12
Q ss_pred CCcEEEEECC
Q 002740 287 EAAVAVLDTA 296 (885)
Q Consensus 287 ~~~v~~yD~~ 296 (885)
..++|.+|++
T Consensus 354 CkDlWyLdTe 363 (830)
T KOG4152|consen 354 CKDLWYLDTE 363 (830)
T ss_pred hhhhhhhccc
Confidence 5677777764
No 45
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=2e-23 Score=243.16 Aligned_cols=209 Identities=16% Similarity=0.279 Sum_probs=175.5
Q ss_pred EEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEE
Q 002740 105 AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWAL 184 (885)
Q Consensus 105 ~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~ 184 (885)
++..++.||++||.+. ....+++++||+.++ +|..+ ++++.+|..++++++++ ++|++||.++ .+++++|
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~--~W~~~---~~m~~~r~~~~~v~~~~-~iYviGG~~~---~~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISN--NWIPI---PPMNSPRLYASGVPANN-KLYVVGGLPN---PTSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCC--EEEEC---CCCCchhhcceEEEECC-EEEEECCcCC---CCceEEE
Confidence 3458999999999753 346688999999994 59999 78999999999988876 9999999754 2679999
Q ss_pred eCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEE
Q 002740 185 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAA 264 (885)
Q Consensus 185 d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~ 264 (885)
|+.++ +|..++++ |.+|..|++++ .+++||++||.+.. .+.+..|++.++ +|...+.+ |.+|++|++
T Consensus 337 dp~~n--~W~~~~~l---~~~r~~~~~~~-~~g~IYviGG~~~~---~~~ve~ydp~~~---~W~~~~~m-~~~r~~~~~ 403 (480)
T PHA02790 337 FHGDA--AWVNMPSL---LKPRCNPAVAS-INNVIYVIGGHSET---DTTTEYLLPNHD---QWQFGPST-YYPHYKSCA 403 (480)
T ss_pred ECCCC--eEEECCCC---CCCCcccEEEE-ECCEEEEecCcCCC---CccEEEEeCCCC---EEEeCCCC-CCccccceE
Confidence 99999 99998765 78888877665 57899999998543 356888998888 78888665 789999999
Q ss_pred EEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEc
Q 002740 265 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 344 (885)
Q Consensus 265 ~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~G 344 (885)
+.++++|||+||. +++||+++++|+.+++++. +|..+++++++++||++|
T Consensus 404 ~~~~~~IYv~GG~------------~e~ydp~~~~W~~~~~m~~------------------~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 404 LVFGRRLFLVGRN------------AEFYCESSNTWTLIDDPIY------------------PRDNPELIIVDNKLLLIG 453 (480)
T ss_pred EEECCEEEEECCc------------eEEecCCCCcEeEcCCCCC------------------CccccEEEEECCEEEEEC
Confidence 9999999999982 5789999999999998844 899999999999999999
Q ss_pred CCCCCCCCCcEEEeeCCCCCcC
Q 002740 345 GLKGDILLDDFLVAENSPFQSD 366 (885)
Q Consensus 345 G~~~~~~~~D~~~ld~~~~~~~ 366 (885)
|+++...++.+..+|..+-+|.
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CcCCCcccceEEEEECCCCeEE
Confidence 9986666678888887776654
No 46
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.88 E-value=1.5e-22 Score=209.26 Aligned_cols=185 Identities=21% Similarity=0.372 Sum_probs=131.6
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCc--ceeeEEEeccccCCCCChHHHHHHHHHHHhc---CCCcEEEeccCCccc
Q 002740 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDI--TYIDYLFLGDYVDRGQHSLETITLLLALKIE---YPENVHLIRGNHEAA 658 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~--~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~---~p~~v~llrGNHE~~ 658 (885)
+||||||||++.|.++|+.+++.+....| ....+||+|||||||+++.||+.+|++|+.+ .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 58999999999999999998864322111 1228999999999999999999999999754 457899999999999
Q ss_pred chhhhcCChH-HHHHHhCCC--cchhhh---hhhhhhccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCC
Q 002740 659 DINALFGFRL-ECIERMGEN--DGIWAW---TRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAG 732 (885)
Q Consensus 659 ~~~~~~gf~~-e~~~~~~~~--~~~~~~---~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~ 732 (885)
.++..+.+.. +....+... .....+ ..+.++++.||+...++ +++|||||++|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~-~~~fvHag~~~-------------------- 139 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVN-DTLFVHGGLGP-------------------- 139 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEEC-CEEEEeCCcHH--------------------
Confidence 8875443321 111111100 001112 24578899999998887 58899999922
Q ss_pred CcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeec
Q 002740 733 SIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSA 807 (885)
Q Consensus 733 ~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa 807 (885)
+|+..-. .+... ..-+.+.++++|+.++.++||+||+.++.|....++|++|+|.+.
T Consensus 140 -------~w~r~y~-------~~~~~----~~~~~~~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 140 -------LWYRGYS-------KETSD----KECAAAHLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred -------HHhhHhh-------hhhhh----ccchHHHHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 3332110 00000 011336788999999999999999999988877899999999874
No 47
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.87 E-value=3.2e-22 Score=212.44 Aligned_cols=131 Identities=22% Similarity=0.393 Sum_probs=99.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCC---cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGD---ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~---~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+++||||||||++.|.++|+.+++...++. ....++||||||||||++|+|||.+|++|. .+.++++||||||.+
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCNK 79 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHHH
Confidence 589999999999999999999887421100 001279999999999999999999999885 446899999999998
Q ss_pred chhhhcCC-------hHHHHHHhCCC---cchhhhhhhhhhccCCceEEEEe-CeEEEecCCCCCCC
Q 002740 659 DINALFGF-------RLECIERMGEN---DGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSI 714 (885)
Q Consensus 659 ~~~~~~gf-------~~e~~~~~~~~---~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~~ 714 (885)
.++...+- ..+....|... ....+++.+.++|+.||++.+++ ++++|||||+.|..
T Consensus 80 ~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 80 LYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 87755331 12334444321 11246678899999999998774 57999999998863
No 48
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.84 E-value=5.2e-21 Score=202.51 Aligned_cols=160 Identities=23% Similarity=0.371 Sum_probs=113.7
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhh
Q 002740 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINA 662 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~ 662 (885)
++||||||||++.|+++|+.+++.+..+ .++|||||||||++|+|||.+|++++ .++++|+||||.+.++.
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D-----~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~ 71 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKD-----RLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAV 71 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCC-----EEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHH
Confidence 5899999999999999999998764332 89999999999999999999999986 58999999999998887
Q ss_pred hcCChH----HHHHHhCCCcchhhhhhhhhhccCCceEEEEeC-eEEEecCCCCCCCcCHHHhhcccCCcc----cCCCC
Q 002740 663 LFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLERPIT----MDAGS 733 (885)
Q Consensus 663 ~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~-~il~vHgGi~~~~~~~~~i~~~~rp~~----~~~~~ 733 (885)
.+|+.. +....+-. ....+.+.++++.+|+...+++ ++++|||||+|.. ++++...+.+.++ -+...
T Consensus 72 ~~g~~~~~~~~t~~~~l~---~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w-~~~~~~~~a~eve~~l~~~~~~ 147 (257)
T cd07422 72 AAGIKKPKKKDTLDDILN---APDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQW-SIEQALKLAREVEAALRGPNYR 147 (257)
T ss_pred hcCccccccHhHHHHHHh---ccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCC-CHHHHHHHHHHHHHHhcCCcHH
Confidence 666431 11111111 1123567899999999988875 7999999999985 4455433333222 11112
Q ss_pred cchhccccCCCCCCCCCCCcccCCCCCc
Q 002740 734 IILMDLLWSDPTENDSIEGLRPNARGPG 761 (885)
Q Consensus 734 ~~~~dllWsdP~~~~~~~~~~~n~rg~~ 761 (885)
.++..+.|+.|. .|.++..|..
T Consensus 148 ~~~~~my~~~p~------~W~~~l~g~~ 169 (257)
T cd07422 148 EFLKNMYGNEPD------RWSDDLTGID 169 (257)
T ss_pred HHHHHhhCCCCc------ccCcccCccH
Confidence 244455555554 2555555443
No 49
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.84 E-value=9.6e-21 Score=200.18 Aligned_cols=130 Identities=23% Similarity=0.427 Sum_probs=99.1
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCC----CcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCc
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAG----DITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~----~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.||.||||||||+.+|+++|+.+++.+.+. .....+++|||||||||++|.|||.+|++++.. .++++||||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 379999999999999999999998764320 000127999999999999999999999998754 57999999999
Q ss_pred ccchhhhcCCh-------HHHHHHhCCCcchhhhhhhhhhccCCceEEEEe-CeEEEecCCCCCC
Q 002740 657 AADINALFGFR-------LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRS 713 (885)
Q Consensus 657 ~~~~~~~~gf~-------~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~ 713 (885)
.+.++...+.. .++...+... ...+.+.+.++|+.||+...++ ++++|||||+++.
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~ 142 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAE-SEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEE 142 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhc-cHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChH
Confidence 98877543311 1223333211 2345677889999999998875 4799999998875
No 50
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.83 E-value=5.2e-20 Score=192.49 Aligned_cols=123 Identities=23% Similarity=0.329 Sum_probs=92.4
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCC--cceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchh
Q 002740 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGD--ITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~--~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
+||||||||++.|.++|+.+++....+. .....+|||||||||||+|.|||.+|++++.. .++++|+||||.+.+.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 6999999999999999999987532100 00118999999999999999999999998643 5899999999998875
Q ss_pred hhcCCh-----------------HHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCC
Q 002740 662 ALFGFR-----------------LECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIG 711 (885)
Q Consensus 662 ~~~gf~-----------------~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~ 711 (885)
...+.. .+..+.+.. ....++.+.++|+.||+....+ +++|||||+.
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~l~~lP~~~~~~-~~~~VHAg~~ 143 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFRE--HSEEHKDWLEWFKTLPLFLDLG-GVRVVHACWD 143 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhc--cchhHHHHHHHHhcCCcEEEEC-CEEEEECCcC
Confidence 433210 122223321 1234677889999999998775 6999999986
No 51
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.83 E-value=7.7e-20 Score=195.74 Aligned_cols=121 Identities=22% Similarity=0.411 Sum_probs=96.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchh
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
.++||||||||++.|.++|+.+++.+..+ .++|||||||||++|+||+.+|+++ +.++++|+||||.+.+.
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D-----~li~lGDlVdrGp~s~~vl~~l~~l----~~~~~~VlGNHD~~ll~ 72 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKD-----TLWLVGDLVNRGPDSLEVLRFVKSL----GDSAVTVLGNHDLHLLA 72 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCC-----EEEEeCCccCCCcCHHHHHHHHHhc----CCCeEEEecChhHHHHH
Confidence 48999999999999999999998754322 7999999999999999999999987 35799999999999888
Q ss_pred hhcCChH----HHHHHhCCCcchhhhhhhhhhccCCceEEEE-eCeEEEecCCCCCCC
Q 002740 662 ALFGFRL----ECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSI 714 (885)
Q Consensus 662 ~~~gf~~----e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i-~~~il~vHgGi~~~~ 714 (885)
..+|+.. +....+-. ....+.+.++++.||+...+ ++++++||||++|..
T Consensus 73 ~~~g~~~~~~~~~l~~~l~---~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~ 127 (275)
T PRK00166 73 VAAGIKRNKKKDTLDPILE---APDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQW 127 (275)
T ss_pred hhcCCccccchhHHHHHHc---cccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCC
Confidence 7776531 11222211 12345678899999998876 568999999999985
No 52
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.82 E-value=3.4e-20 Score=195.98 Aligned_cols=127 Identities=24% Similarity=0.370 Sum_probs=101.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchh
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
.++||||||||+++|.++|+.+++.+..+ .++||||||||||+|+|||.++.+++ .++++|+||||.+.++
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D-----~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~ 72 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQD-----TLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLA 72 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCC-----EEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHH
Confidence 48999999999999999999999765432 79999999999999999999999874 5688999999999998
Q ss_pred hhcCCh-----HHHHHHhCCCcchhhhhhhhhhccCCceEEEEe-CeEEEecCCCCCCCcCHHHhhc
Q 002740 662 ALFGFR-----LECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVEQIEK 722 (885)
Q Consensus 662 ~~~gf~-----~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~~~~~~~i~~ 722 (885)
..+|+. +.....+. ....+.+.++++.+|+....+ .++++|||||+|.+ ++++...
T Consensus 73 ~~~g~~~~~~~d~l~~~l~----a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w-~l~~a~~ 134 (279)
T TIGR00668 73 VFAGISRNKPKDRLDPLLE----APDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQW-DLQTAKE 134 (279)
T ss_pred HhcCCCccCchHHHHHHHH----ccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCC-cHHHHHH
Confidence 887752 11111121 124567889999999997664 46999999999985 4555443
No 53
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.81 E-value=8.9e-19 Score=184.80 Aligned_cols=158 Identities=24% Similarity=0.329 Sum_probs=108.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCC-cEEEeccCCcccch
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE-NVHLIRGNHEAADI 660 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~-~v~llrGNHE~~~~ 660 (885)
++++||||||+++.|.++|+.+.............+||||||||||++|.||+.+|++++..+|. ++++|+||||.+.+
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 69999999999999999998765321100011126999999999999999999999999999876 68999999998765
Q ss_pred hhhcC---------Ch------------------------------------------------------HHHHHHhCCC
Q 002740 661 NALFG---------FR------------------------------------------------------LECIERMGEN 677 (885)
Q Consensus 661 ~~~~g---------f~------------------------------------------------------~e~~~~~~~~ 677 (885)
..... |. .++...|+-.
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 53322 11 1122222221
Q ss_pred cchh-----hhhhhhhhccCCceEEEEeCeE-------------EEecCCCCCCCcCHHHhhccc-CCcccCCCCcchhc
Q 002740 678 DGIW-----AWTRFNQLFNCLPLAALIEKKI-------------ICMHGGIGRSIHSVEQIEKLE-RPITMDAGSIILMD 738 (885)
Q Consensus 678 ~~~~-----~~~~~~~~f~~LP~~~~i~~~i-------------l~vHgGi~~~~~~~~~i~~~~-rp~~~~~~~~~~~d 738 (885)
.+.. +-....+|++.||.....++ + +|||||+-|.+.--+|.+.+. +-... .-.|
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~~-~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~L~~~d~~~-----p~~~ 236 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEEDD-VCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKDTSI-----PKIA 236 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeCc-ccccccccccccceEEEEcccCCCCChHHhhhhhhcccccc-----cccc
Confidence 1111 11356788899999877653 5 999999999977666666543 11111 2237
Q ss_pred cccCCCC
Q 002740 739 LLWSDPT 745 (885)
Q Consensus 739 llWsdP~ 745 (885)
+||....
T Consensus 237 ~l~~R~~ 243 (304)
T cd07421 237 PLSGRKN 243 (304)
T ss_pred ccccchh
Confidence 7887754
No 54
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.78 E-value=6.4e-19 Score=184.06 Aligned_cols=120 Identities=26% Similarity=0.363 Sum_probs=89.8
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
++++||||||||++.|+++|+.+++.+..+ +++|||||||||++|.|||.+|.+ ..++.|+||||.+.+
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~~~D-----~li~lGDlvDrGp~s~~vl~~l~~------~~~~~v~GNHE~~~l 85 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDPWRD-----LLISVGDLIDRGPQSLRCLQLLEE------HWVRAVRGNHEQMAL 85 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCcccC-----EEEEcCcccCCCcCHHHHHHHHHc------CCceEeeCchHHHHH
Confidence 489999999999999999999998763322 799999999999999999999966 268899999999988
Q ss_pred hhhcCChHHHHHHhCC-------CcchhhhhhhhhhccCCceEEEEe---CeEEEecCCCC
Q 002740 661 NALFGFRLECIERMGE-------NDGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 711 (885)
Q Consensus 661 ~~~~gf~~e~~~~~~~-------~~~~~~~~~~~~~f~~LP~~~~i~---~~il~vHgGi~ 711 (885)
+...+-....+...+. ......+..+.++++.||+...++ +++++||||++
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 7543321111111110 011223456668999999997663 57999999984
No 55
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.77 E-value=1.8e-18 Score=179.57 Aligned_cols=122 Identities=30% Similarity=0.395 Sum_probs=94.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
++++|||||||++.+|.++++.+++.+..+ .++|+|||||||+++.|++.+|.. ..+++|+||||.+.+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d-----~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~ 69 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARD-----RLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAI 69 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCC-----EEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHH
Confidence 478999999999999999999987643221 799999999999999999998875 368999999999988
Q ss_pred hhhcC--ChHHHHHHhCCCc-----chhhhhhhhhhccCCceEEEEe---CeEEEecCCCCCC
Q 002740 661 NALFG--FRLECIERMGEND-----GIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIGRS 713 (885)
Q Consensus 661 ~~~~g--f~~e~~~~~~~~~-----~~~~~~~~~~~f~~LP~~~~i~---~~il~vHgGi~~~ 713 (885)
....+ +..+.+.+.+... ...+++.+.++|+.||+...++ .+++|||||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~ 132 (207)
T cd07424 70 DALRAEPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSD 132 (207)
T ss_pred hHhhCCCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcc
Confidence 77655 2233333333221 1113456788999999998875 4799999999655
No 56
>PHA02239 putative protein phosphatase
Probab=99.77 E-value=3.2e-18 Score=179.66 Aligned_cols=140 Identities=25% Similarity=0.397 Sum_probs=101.4
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
++++||||||++..|.++++.+... +.+ .+||||||||||++|.+|+.+|+++.. .+.++++|+||||.+.
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d------~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~ 74 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEE------TIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEF 74 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCC------EEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHH
Confidence 5899999999999999999988532 223 799999999999999999999999754 4568999999999986
Q ss_pred hhhhcCC--------------hHHHHHHhCCCcc---------------------------hhhhhhhhhhccCCceEEE
Q 002740 660 INALFGF--------------RLECIERMGENDG---------------------------IWAWTRFNQLFNCLPLAAL 698 (885)
Q Consensus 660 ~~~~~gf--------------~~e~~~~~~~~~~---------------------------~~~~~~~~~~f~~LP~~~~ 698 (885)
+....+. ..+++..|+-... ...+..+.++++.||+...
T Consensus 75 l~~~~~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~ 154 (235)
T PHA02239 75 YNIMENVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYK 154 (235)
T ss_pred HHHHhCchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEE
Confidence 6533211 1233445532110 0123455668899999988
Q ss_pred EeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCC
Q 002740 699 IEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDP 744 (885)
Q Consensus 699 i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP 744 (885)
.+ +++|||||+.|.. |++. +-..+++|...
T Consensus 155 ~~-~~ifVHAGi~p~~-----------~~~~----q~~~~llWiR~ 184 (235)
T PHA02239 155 ED-KYIFSHSGGVSWK-----------PVEE----QTIDQLIWSRD 184 (235)
T ss_pred EC-CEEEEeCCCCCCC-----------Chhh----CCHhHeEEecc
Confidence 76 5999999998873 2221 13468899884
No 57
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.72 E-value=1.8e-17 Score=173.00 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=86.7
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
++++||||||||++.|+++|+.+.+.+..+ .++|||||||||++|.||+.+|.+ .+++.||||||.+.+
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~~~~d-----~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~ 83 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFCPETD-----LLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMAL 83 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCCCCCC-----EEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHH
Confidence 489999999999999999999987543322 799999999999999999998864 368999999999888
Q ss_pred hhhcCChHHHHHHhCCC-------cchhhhhhhhhhccCCceEEEEe---CeEEEecCCCC
Q 002740 661 NALFGFRLECIERMGEN-------DGIWAWTRFNQLFNCLPLAALIE---KKIICMHGGIG 711 (885)
Q Consensus 661 ~~~~gf~~e~~~~~~~~-------~~~~~~~~~~~~f~~LP~~~~i~---~~il~vHgGi~ 711 (885)
.....-....+...+.. ..........++++.||+...+. .++++||||++
T Consensus 84 ~~~~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p 144 (218)
T PRK09968 84 DAFETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYP 144 (218)
T ss_pred HHHhcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCC
Confidence 65421111111111100 00112234456889999998763 47999999983
No 58
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=8.3e-15 Score=154.96 Aligned_cols=284 Identities=17% Similarity=0.212 Sum_probs=211.1
Q ss_pred ecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCC--CcEEEecCCCCCCc
Q 002740 21 DTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLT--RKWTRIRPAGEPPS 98 (885)
Q Consensus 21 ~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t--~~W~~l~~~~~~P~ 98 (885)
+..+++|.+--+-+...+ ++.+||-=|.. -...|.+|+.. ..|+++.... -.
T Consensus 28 ~~lPdlPvg~KnG~Ga~i------g~~~YVGLGs~------------------G~afy~ldL~~~~k~W~~~a~Fp--G~ 81 (381)
T COG3055 28 GQLPDLPVGFKNGAGALI------GDTVYVGLGSA------------------GTAFYVLDLKKPGKGWTKIADFP--GG 81 (381)
T ss_pred ccCCCCCcccccccccee------cceEEEEeccC------------------CccceehhhhcCCCCceEcccCC--Cc
Confidence 466788888887788888 78899876633 24577888865 5799997542 25
Q ss_pred ccCccEEEEECCEEEEEcCcCCC----CCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCC
Q 002740 99 PRAAHAAAAVGTMVVFQGGIGPA----GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDG 174 (885)
Q Consensus 99 ~R~~ha~~~~~~~iyv~GG~~~~----~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~ 174 (885)
+|.+.++++++++||||||.+.. ....+|+|+||+.+++ |+++.+ ..|..-.+++++.+++..++++||.+.
T Consensus 82 ~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~ns--W~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 82 ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNS--WHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCCh--hheecc--ccccccccceeEecCCceEEEEccccH
Confidence 79999999999999999997632 3456999999999955 999965 445568899998888889999999642
Q ss_pred C----------------------------------cccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEE
Q 002740 175 K----------------------------------RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFL 220 (885)
Q Consensus 175 ~----------------------------------~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~ 220 (885)
. ....+|+.|++.++ +|+.+- ..|....+.++++..++++.
T Consensus 158 ~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n--~W~~~G---~~pf~~~aGsa~~~~~n~~~ 232 (381)
T COG3055 158 NIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTN--QWRNLG---ENPFYGNAGSAVVIKGNKLT 232 (381)
T ss_pred HhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccc--hhhhcC---cCcccCccCcceeecCCeEE
Confidence 1 13467899999999 998874 34666666788888888888
Q ss_pred EEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCcc------ceeEEEEECCEEEEEcccCCCC-------------
Q 002740 221 LCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPR------YQHAAVFVGARLHVTGGALRGG------------- 281 (885)
Q Consensus 221 v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R------~~hs~~~~~~~i~V~GG~~~~~------------- 281 (885)
++-|.-..+-....++.++...+ .-+|.++...++... .++-.-..++.++|.||..-.+
T Consensus 233 lInGEiKpGLRt~~~k~~~~~~~-~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH 311 (381)
T COG3055 233 LINGEIKPGLRTAEVKQADFGGD-NLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAH 311 (381)
T ss_pred EEcceecCCccccceeEEEeccC-ceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccc
Confidence 88887777777778888877643 446777765433322 2222333478899999986222
Q ss_pred --CCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCC-CCCCCCcEEEe
Q 002740 282 --RAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLK-GDILLDDFLVA 358 (885)
Q Consensus 282 --~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~-~~~~~~D~~~l 358 (885)
.......+|++|| .+.|+.+..+|. +++...++..++.||++||.+ +...+..++.+
T Consensus 312 ~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~------------------~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 312 EGLSKSWNSEVYIFD--NGSWKIVGELPQ------------------GLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred cchhhhhhceEEEEc--CCceeeecccCC------------------CccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 1222367899998 899999999954 889999999999999999975 44666666665
Q ss_pred eC
Q 002740 359 EN 360 (885)
Q Consensus 359 d~ 360 (885)
-.
T Consensus 372 ~~ 373 (381)
T COG3055 372 SW 373 (381)
T ss_pred EE
Confidence 43
No 59
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.59 E-value=3.2e-16 Score=169.89 Aligned_cols=314 Identities=17% Similarity=0.254 Sum_probs=216.2
Q ss_pred CCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccE
Q 002740 25 DAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHA 104 (885)
Q Consensus 25 ~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha 104 (885)
..|.-|.||.|+.-+. ++.||++||+.+.. -..|+|.|....+.|+.++..+..|-.|++|-
T Consensus 256 ~~p~~RgGHQMV~~~~----~~CiYLYGGWdG~~--------------~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 256 NRPGMRGGHQMVIDVQ----TECVYLYGGWDGTQ--------------DLADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred cCccccCcceEEEeCC----CcEEEEecCcccch--------------hHHHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 4688999999998843 56999999999877 37999999999999999998888999999999
Q ss_pred EEEECC--EEEEEcCcCCC-----CCccccEEEEEecCCccEEEEEeec---CCCCCCccccEEEEECCc-EEEEEecCC
Q 002740 105 AAAVGT--MVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQ---GQGPGPRYGHVMDLVSQR-YLVSVSGND 173 (885)
Q Consensus 105 ~~~~~~--~iyv~GG~~~~-----~~~~~dl~~~D~~~~~~~W~~l~~~---~~~p~~R~~h~~~~~~~~-~lyv~GG~~ 173 (885)
++.... ++|+.|-.-+. ...-.|+|+||.+++. |..+.-. ...|...+.|.|++.+++ .+|||||..
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~--W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNT--WMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCce--eEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 999866 99999964321 1334799999999955 9888642 246889999999998763 699999963
Q ss_pred C--C-cccCcEEEEeCCCCCeeEEEcCCCC-------CCCCccccceEEEe-cCCEEEEEccCCCCCCcccceEEEEcCC
Q 002740 174 G--K-RVLSDAWALDTAQKPYVWQRLNPEG-------DRPSARMYATASAR-SDGMFLLCGGRDASGAPLADAYGLLMHR 242 (885)
Q Consensus 174 ~--~-~~~ndv~~~d~~t~~~~W~~l~~~g-------~~P~~r~~hsa~~~-~~~~l~v~GG~~~~~~~l~dv~~l~~~~ 242 (885)
- . ..+.-+|.||+... .|..+...- +--..|.+|++-.. .+..+|++||...... ++=.+.|++..
T Consensus 396 ~~~~e~~f~GLYaf~~~~~--~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E-l~L~f~y~I~~ 472 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQ--TWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE-LNLFFSYDIDS 472 (723)
T ss_pred ccCCCccccceEEEecCCc--cHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE-Eeehhcceecc
Confidence 2 2 35788999999988 887764211 11246778877655 5568999998755432 44445554332
Q ss_pred CCeeE---EEe-CCCCCCCccceeEEEEE---CCEEEEEcccCCCCCC--ccCCCcEEEEECCCCeEEEccCCcccCC--
Q 002740 243 NGQWE---WTL-APGVAPSPRYQHAAVFV---GARLHVTGGALRGGRA--IEGEAAVAVLDTAAGVWLDRNGLVTSSR-- 311 (885)
Q Consensus 243 ~~~W~---w~~-~~~~~P~~R~~hs~~~~---~~~i~V~GG~~~~~~~--~~~~~~v~~yD~~t~~W~~v~~~~~~~~-- 311 (885)
.+.-. -.+ .+.+.|++-+.-- +.. ...|++.-|....... ....+++|+|+..+..|..+..+...+.
T Consensus 473 E~~~~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~ 551 (723)
T KOG2437|consen 473 EHVDIISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDN 551 (723)
T ss_pred ccchhhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccC
Confidence 21000 000 1112222211111 222 3567776665432211 1135789999999999998887643211
Q ss_pred ----CCCCCCCCCCCcCcccccceEEEEE--CCEEEEEcCCCCC-----CCCCcEEEeeCCC
Q 002740 312 ----TSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGD-----ILLDDFLVAENSP 362 (885)
Q Consensus 312 ----~~~~~~~~~~~~~p~~R~~hs~~~~--~~~IyI~GG~~~~-----~~~~D~~~ld~~~ 362 (885)
......+......+.+|++|+.++. ..-+|.+||+.+. ..++|.|.++.-.
T Consensus 552 dtvfsvpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I~r 613 (723)
T KOG2437|consen 552 DTVFSVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKICR 613 (723)
T ss_pred CceeeccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhhcc
Confidence 1223445567788999999987665 4569999998764 5578999887554
No 60
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.51 E-value=6.4e-13 Score=140.83 Aligned_cols=239 Identities=19% Similarity=0.339 Sum_probs=173.1
Q ss_pred ccceEecCCCCC-CCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCC
Q 002740 16 LETYWDTDEDAP-GPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAG 94 (885)
Q Consensus 16 ~~~~w~~~~~~P-~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~ 94 (885)
....|+....-| .+|.+.+++++ +++||+|||....... ...+.+|+|+||+.+++|.++.+.
T Consensus 68 ~~k~W~~~a~FpG~~rnqa~~a~~------~~kLyvFgG~Gk~~~~---------~~~~~nd~Y~y~p~~nsW~kl~t~- 131 (381)
T COG3055 68 PGKGWTKIADFPGGARNQAVAAVI------GGKLYVFGGYGKSVSS---------SPQVFNDAYRYDPSTNSWHKLDTR- 131 (381)
T ss_pred CCCCceEcccCCCcccccchheee------CCeEEEeeccccCCCC---------CceEeeeeEEecCCCChhheeccc-
Confidence 346899999888 58999999999 9999999999877652 133799999999999999999876
Q ss_pred CCCcccCccEEEEECC-EEEEEcCcCCC---------------------------------CCccccEEEEEecCCccEE
Q 002740 95 EPPSPRAAHAAAAVGT-MVVFQGGIGPA---------------------------------GHSTDDLYVLDLTNDKFKW 140 (885)
Q Consensus 95 ~~P~~R~~ha~~~~~~-~iyv~GG~~~~---------------------------------~~~~~dl~~~D~~~~~~~W 140 (885)
.|....+++++..++ +||++||.+.. .....+++.||+.+ .+|
T Consensus 132 -sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~--n~W 208 (381)
T COG3055 132 -SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPST--NQW 208 (381)
T ss_pred -cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccccccccccc--chh
Confidence 345578889999887 99999996411 12346899999998 459
Q ss_pred EEEeecCCCC-CCccccEEEEECCcEEEEEecCCCC-cccCcEEEEeCCCCCeeEEEcCCCCCCCC---ccccceEEEec
Q 002740 141 HRVVVQGQGP-GPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLNPEGDRPS---ARMYATASARS 215 (885)
Q Consensus 141 ~~l~~~~~~p-~~R~~h~~~~~~~~~lyv~GG~~~~-~~~ndv~~~d~~t~~~~W~~l~~~g~~P~---~r~~hsa~~~~ 215 (885)
..+ +..| .++++++. ++.++.+.++-|.-.. -+...++.++...+..+|.++.....+.. ...........
T Consensus 209 ~~~---G~~pf~~~aGsa~-~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s 284 (381)
T COG3055 209 RNL---GENPFYGNAGSAV-VIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKS 284 (381)
T ss_pred hhc---CcCcccCccCcce-eecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceecccee
Confidence 988 6444 56666444 6666678888886443 24556788888777679999965522111 11112222346
Q ss_pred CCEEEEEccCCCC------------------CCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEccc
Q 002740 216 DGMFLLCGGRDAS------------------GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGA 277 (885)
Q Consensus 216 ~~~l~v~GG~~~~------------------~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~ 277 (885)
++.+++.||..-. ....+++|.++. + .|..+ +..|.++.+..++..++.||++||.
T Consensus 285 ~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~---g--~Wk~~-GeLp~~l~YG~s~~~nn~vl~IGGE 358 (381)
T COG3055 285 NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDN---G--SWKIV-GELPQGLAYGVSLSYNNKVLLIGGE 358 (381)
T ss_pred CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcC---C--ceeee-cccCCCccceEEEecCCcEEEEccc
Confidence 7788888885321 134677888883 2 56666 4557888888888999999999999
Q ss_pred CCCCCC
Q 002740 278 LRGGRA 283 (885)
Q Consensus 278 ~~~~~~ 283 (885)
..++..
T Consensus 359 ~~~Gka 364 (381)
T COG3055 359 TSGGKA 364 (381)
T ss_pred cCCCee
Confidence 887764
No 61
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.43 E-value=1e-13 Score=150.69 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=155.3
Q ss_pred cEEEEEeecC-------CCCCCccccEEEEEC-CcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccc
Q 002740 138 FKWHRVVVQG-------QGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYA 209 (885)
Q Consensus 138 ~~W~~l~~~~-------~~p~~R~~h~~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~h 209 (885)
.+|.+++.+. ..|..|.||.|+... ++.+|++||++|.+.+.|+|.|+...+ .|..+...+..|..|.+|
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~--~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKEN--QWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcc--eeEEeecCCCCCcchhhh
Confidence 5698887654 679999999998764 359999999999999999999999998 999999888889999999
Q ss_pred eEEEe-cCCEEEEEccCCCCC-----CcccceEEEEcCCCCeeEEEeCC-----CCCCCccceeEEEEECCE--EEEEcc
Q 002740 210 TASAR-SDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP-----GVAPSPRYQHAAVFVGAR--LHVTGG 276 (885)
Q Consensus 210 sa~~~-~~~~l~v~GG~~~~~-----~~l~dv~~l~~~~~~~W~w~~~~-----~~~P~~R~~hs~~~~~~~--i~V~GG 276 (885)
.++.. ...++|+.|-.-... ..-.|+|+||..++ .|..+. .--|..-+.|.+++.+.+ +|||||
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~---~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG 393 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTN---TWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG 393 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCc---eeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence 99864 334899998653221 34689999999877 555543 123788999999999877 999999
Q ss_pred cCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEE--CCEEEEEcCCCCCCCCCc
Q 002740 277 ALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASI--GVRIYIYGGLKGDILLDD 354 (885)
Q Consensus 277 ~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~--~~~IyI~GG~~~~~~~~D 354 (885)
+.-... ......++.||+....|..+..-.... ...+ ..-..|.+|++-.. ++.+|+|||....+.++=
T Consensus 394 r~~~~~-e~~f~GLYaf~~~~~~w~~l~e~~~~~----~~vv----E~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L 464 (723)
T KOG2437|consen 394 RILTCN-EPQFSGLYAFNCQCQTWKLLREDSCNA----GPVV----EDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNL 464 (723)
T ss_pred eeccCC-CccccceEEEecCCccHHHHHHHHhhc----Ccch----hHHHHHHHHHHHhcCCCCeEEeccCcccceEEee
Confidence 864332 123678999999999999877542210 0001 11237888887777 458999999877665544
Q ss_pred EEEe
Q 002740 355 FLVA 358 (885)
Q Consensus 355 ~~~l 358 (885)
++..
T Consensus 465 ~f~y 468 (723)
T KOG2437|consen 465 FFSY 468 (723)
T ss_pred hhcc
Confidence 4433
No 62
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=98.97 E-value=3.4e-09 Score=104.53 Aligned_cols=162 Identities=23% Similarity=0.228 Sum_probs=100.2
Q ss_pred CeEEEecCCCCHHHH----HHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHH--HHHHhcCCCcEEEeccCC
Q 002740 582 PVKVFGDLHGQFGDL----MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLL--LALKIEYPENVHLIRGNH 655 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L----~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll--~~lk~~~p~~v~llrGNH 655 (885)
+|+++||+|+..... ..+.........+ .+|++||++|++..+.+..... +..+...+..+++++|||
T Consensus 2 ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 2 RILVISDLHGGYDDDSDAFRKLDEIAAENKPD------FIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTS------EEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred eEEEEcCCCCCCcchhHHHHHHHHHhccCCCC------EEEeeccccccccccccchhhhccchhhhhcccccccccccc
Confidence 589999999999987 3333333222233 7899999999999988887765 556666778999999999
Q ss_pred cccchhhhcCChHHHHHHhCCC------------------------------cchhhhhhhhhhccCCceEEEEeCeEEE
Q 002740 656 EAADINALFGFRLECIERMGEN------------------------------DGIWAWTRFNQLFNCLPLAALIEKKIIC 705 (885)
Q Consensus 656 E~~~~~~~~gf~~e~~~~~~~~------------------------------~~~~~~~~~~~~f~~LP~~~~i~~~il~ 705 (885)
|.......+............. ............+............|++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 155 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEAKNDDPVIVF 155 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHEEEESEEEEE
T ss_pred ccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcccccccccccccccceeEE
Confidence 9987654433222221110000 0000001111122222333444557888
Q ss_pred ecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEe
Q 002740 706 MHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRA 785 (885)
Q Consensus 706 vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~ 785 (885)
+|.++.+........ .....+.+.+..++++.++++++-|
T Consensus 156 ~H~p~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~G 195 (200)
T PF00149_consen 156 THHPPYSSSSDSSSY----------------------------------------GNESKGREALEELLKKYNVDLVLSG 195 (200)
T ss_dssp ESSSSSTTSSSTHHH----------------------------------------SSEEEHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCCCcccccccc----------------------------------------chhhccHHHHHHHHhhCCCCEEEeC
Confidence 888887653211111 0135788999999999999999999
Q ss_pred cccc
Q 002740 786 HECV 789 (885)
Q Consensus 786 H~~~ 789 (885)
|+-.
T Consensus 196 H~H~ 199 (200)
T PF00149_consen 196 HTHR 199 (200)
T ss_dssp SSSS
T ss_pred ceec
Confidence 9753
No 63
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=98.78 E-value=9.3e-09 Score=99.97 Aligned_cols=147 Identities=35% Similarity=0.502 Sum_probs=118.0
Q ss_pred chhhhcCChHHHHHHhCCCcchhhhhh---hhhhccCCceEEEEeC-eEEEecCCCCCCC-cCHHHhhcccCCc--ccCC
Q 002740 659 DINALFGFRLECIERMGENDGIWAWTR---FNQLFNCLPLAALIEK-KIICMHGGIGRSI-HSVEQIEKLERPI--TMDA 731 (885)
Q Consensus 659 ~~~~~~gf~~e~~~~~~~~~~~~~~~~---~~~~f~~LP~~~~i~~-~il~vHgGi~~~~-~~~~~i~~~~rp~--~~~~ 731 (885)
.++..+++.+++...+... ..|.. +.++|+.||+.+++++ .++|.|+++++.+ ..+++++.+.|.. ....
T Consensus 2 ~l~~~~~~~~~~~~~~~~~---~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 78 (155)
T COG0639 2 LLTALYGFYDEKLRKYGEE---LEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLRACEVPH 78 (155)
T ss_pred hhhhhhchhHHhhhhcCCc---eeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhhcccCCC
Confidence 3456778888877777543 35666 9999999999999988 9999999999976 6788888887765 3333
Q ss_pred CCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeeccccc
Q 002740 732 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 811 (885)
Q Consensus 732 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 811 (885)
.+ ...+.+|++|... ....|.+++||.+. .| .+....|+..+....+.|+|+.+..++...+.+..+|.|++++||
T Consensus 79 ~g-~~~~~~~~~~~~~-~~~~w~~~~~g~~~-~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 79 AG-HTHDLLWSDPDGG-DRRIWNPGPRGVPR-DG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred cc-ccccccCCCCCCC-cccccccCCCCCCc-cc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 44 5566699998752 24678999999883 34 688889998888888999999999999988877899999999997
Q ss_pred C
Q 002740 812 G 812 (885)
Q Consensus 812 ~ 812 (885)
.
T Consensus 155 ~ 155 (155)
T COG0639 155 Y 155 (155)
T ss_pred C
Confidence 3
No 64
>PF13964 Kelch_6: Kelch motif
Probab=98.72 E-value=3e-08 Score=78.12 Aligned_cols=50 Identities=38% Similarity=0.767 Sum_probs=43.4
Q ss_pred CcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCccc
Q 002740 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPR 100 (885)
Q Consensus 29 ~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R 100 (885)
||.+|+++++ +++||||||...... .++++++||+.+++|+++++ +|.||
T Consensus 1 pR~~~s~v~~------~~~iyv~GG~~~~~~-------------~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVV------GGKIYVFGGYDNSGK-------------YSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEE------CCEEEEECCCCCCCC-------------ccccEEEEcCCCCcEEECCC---CCCCC
Confidence 7999999999 999999999998532 68999999999999999984 45665
No 65
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.71 E-value=3.6e-07 Score=90.19 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=48.5
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
+|.+++|+||++..+.++++.+.. .+ .++++||+++++.... ++ ....+++++||||...
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d------~ii~~GD~~~~~~~~~--------~~--~~~~~~~V~GNhD~~~ 60 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VD------LIIHAGDVLYPGPLNE--------LE--LKAPVIAVRGNCDGEV 60 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CC------EEEECCccccccccch--------hh--cCCcEEEEeCCCCCcC
Confidence 478999999999999999998754 23 7999999999998765 22 2246999999999753
No 66
>PF13964 Kelch_6: Kelch motif
Probab=98.68 E-value=4.5e-08 Score=77.09 Aligned_cols=50 Identities=30% Similarity=0.583 Sum_probs=45.1
Q ss_pred ccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 99 PRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 99 ~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
||.+|++++++++|||+||........+++++||+.+++ |.++ +++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNT--WEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCc--EEEC---CCCCCCC
Confidence 699999999999999999987657789999999999955 9999 7898887
No 67
>PRK09453 phosphodiesterase; Provisional
Probab=98.63 E-value=1e-07 Score=96.86 Aligned_cols=68 Identities=19% Similarity=0.311 Sum_probs=53.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC--------hHHHHHHHHHHHhcCCCcEEEecc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH--------SLETITLLLALKIEYPENVHLIRG 653 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~--------s~evl~ll~~lk~~~p~~v~llrG 653 (885)
++.|++|+||++..|.++++.+.....+ .++++||++|+|++ ..+++.+|..+ ...+++++|
T Consensus 2 ri~viSD~Hg~~~~~~~~l~~~~~~~~d------~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~----~~~v~~V~G 71 (182)
T PRK09453 2 KLMFASDTHGSLPATEKALELFAQSGAD------WLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAY----ADKIIAVRG 71 (182)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhcCCC------EEEEcccccccCcCCCCccccCHHHHHHHHHhc----CCceEEEcc
Confidence 5899999999999999999887433333 79999999999873 45666666543 247999999
Q ss_pred CCcccc
Q 002740 654 NHEAAD 659 (885)
Q Consensus 654 NHE~~~ 659 (885)
|||...
T Consensus 72 NhD~~~ 77 (182)
T PRK09453 72 NCDSEV 77 (182)
T ss_pred CCcchh
Confidence 999743
No 68
>PLN02772 guanylate kinase
Probab=98.63 E-value=1.8e-07 Score=103.85 Aligned_cols=89 Identities=17% Similarity=0.340 Sum_probs=78.1
Q ss_pred CcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc
Q 002740 97 PSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR 176 (885)
Q Consensus 97 P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~ 176 (885)
+.|+.+|+++++++++||+||.+..+..++++|+||..+ ++|....+.|..|.+|.||+++++++.+|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t--~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKIT--NNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCC--CcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC-
Confidence 468999999999999999999877666889999999999 66999999999999999999999988899999875443
Q ss_pred ccCcEEEEeCCCC
Q 002740 177 VLSDAWALDTAQK 189 (885)
Q Consensus 177 ~~ndv~~~d~~t~ 189 (885)
-.++|.+...|.
T Consensus 99 -~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -DDSIWFLEVDTP 110 (398)
T ss_pred -ccceEEEEcCCH
Confidence 367999988774
No 69
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.62 E-value=8e-08 Score=75.32 Aligned_cols=49 Identities=41% Similarity=0.783 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV 108 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~ 108 (885)
+++||||||....... .++|+|+||+.+++|+++ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~------------~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT------------RLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC------------EecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 4689999999852221 689999999999999988 567899999999874
No 70
>PLN02772 guanylate kinase
Probab=98.59 E-value=2.4e-07 Score=102.86 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCCCCCccccEEEEECCcEEEEEecCCCCc-ccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccC
Q 002740 147 GQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 225 (885)
Q Consensus 147 ~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~-~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~ 225 (885)
|-...++.+|+++.+++ ++|||||.+... ..+++|+||+.+. +|......|..|.+|.+|+++++.+++|+|+++.
T Consensus 19 ~~~~~~~~~~tav~igd-k~yv~GG~~d~~~~~~~v~i~D~~t~--~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 19 GFGVKPKNRETSVTIGD-KTYVIGGNHEGNTLSIGVQILDKITN--NWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred CccCCCCCcceeEEECC-EEEEEcccCCCccccceEEEEECCCC--cEecccccCCCCCCCCcceEEEECCceEEEEeCC
Confidence 44567899999999997 999999987765 7789999999999 9999999999999999999999999999999987
Q ss_pred CCCCCcccceEEEEcCCC
Q 002740 226 DASGAPLADAYGLLMHRN 243 (885)
Q Consensus 226 ~~~~~~l~dv~~l~~~~~ 243 (885)
... -.++|.+...+.
T Consensus 96 ~~~---~~~~w~l~~~t~ 110 (398)
T PLN02772 96 SAP---DDSIWFLEVDTP 110 (398)
T ss_pred CCC---ccceEEEEcCCH
Confidence 655 378999887644
No 71
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=98.58 E-value=7.9e-07 Score=87.48 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=44.3
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
+|.++||+|++...+.++++.+. ..+ .++++||++|+ .+++.++..+ .++.++||||...
T Consensus 2 ki~~~sD~H~~~~~~~~~~~~~~--~~d------~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 2 KIAVISDLHGNLDALEAVLEYIN--EPD------FVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEE--TTTHHHHHHHHHHHT--TES------EEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTH
T ss_pred EEEEEeCCCCChhHHHHHHHHhc--CCC------EEEECCCchhH----HHHHHHHhcC------CEEEEeCCccccc
Confidence 58999999999999999999982 122 68899999993 7777777555 6999999999644
No 72
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.52 E-value=2.1e-07 Score=72.90 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=42.6
Q ss_pred CCEEEEEcCcC-CCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE
Q 002740 109 GTMVVFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV 161 (885)
Q Consensus 109 ~~~iyv~GG~~-~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~ 161 (885)
+++|||+||.+ .....++|+|+||+.+ .+|+++ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~--~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDT--NTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCC--CEEEEC---CCCCCCccceEEEEC
Confidence 57999999987 5678899999999988 559998 899999999999864
No 73
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.48 E-value=3.2e-06 Score=83.88 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=47.1
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~-~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
++.|++|+||++.++..+++..... ..+ .++++||++ +.+++.+|..+. ..++.++||||..
T Consensus 2 ~i~viSD~H~~~~~~~~~~~~~~~~~~~d------~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 2 KILVISDTHGPLRATELPVELFNLESNVD------LVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred EEEEEecccCCcchhHhHHHHHhhccCCC------EEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 5899999999998777666665443 233 789999999 467777776542 3599999999983
No 74
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.45 E-value=4.4e-07 Score=71.10 Aligned_cols=49 Identities=35% Similarity=0.773 Sum_probs=40.3
Q ss_pred CcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCC
Q 002740 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAG 94 (885)
Q Consensus 29 ~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~ 94 (885)
||.+|+++++ +++||||||....... ...+++++||+.+++|+++++++
T Consensus 1 ~r~~hs~~~~------~~kiyv~GG~~~~~~~-----------~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVL------DGKIYVFGGYGTDNGG-----------SSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEE------CCEEEEECCcccCCCC-----------cccceeEEEECCCCEEeecCCCC
Confidence 6999999999 9999999999222211 16899999999999999988653
No 75
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.45 E-value=4.5e-07 Score=71.05 Aligned_cols=48 Identities=29% Similarity=0.483 Sum_probs=39.7
Q ss_pred ccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCC
Q 002740 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 258 ~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
||++|++++++++|||+||+.. .......+++++||+++.+|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~-~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGT-DNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCccc-CCCCcccceeEEEECCCCEEeecCCC
Confidence 6899999999999999999911 11223478999999999999999876
No 76
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.42 E-value=3e-05 Score=80.59 Aligned_cols=167 Identities=15% Similarity=0.212 Sum_probs=102.6
Q ss_pred EEEEEcCcCCCCCccccEEEEEecCCc------cEEEEEeecCCCCCCccccEEEEE---CCcEEEEEecCCC-------
Q 002740 111 MVVFQGGIGPAGHSTDDLYVLDLTNDK------FKWHRVVVQGQGPGPRYGHVMDLV---SQRYLVSVSGNDG------- 174 (885)
Q Consensus 111 ~iyv~GG~~~~~~~~~dl~~~D~~~~~------~~W~~l~~~~~~p~~R~~h~~~~~---~~~~lyv~GG~~~------- 174 (885)
..+|.||..+.+..+..+|++.++++. ..+.+-...|+.|.+||||++.++ ++...++|||..-
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 677889998888999999999987642 223333446999999999999887 4457899999642
Q ss_pred -------CcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCC-CcccceEEEEcCCCCee
Q 002740 175 -------KRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG-APLADAYGLLMHRNGQW 246 (885)
Q Consensus 175 -------~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~-~~l~dv~~l~~~~~~~W 246 (885)
..+...|+.+|++-+ ..+. ....++--...+|.+.+ .++.+|+.||..-.. ...-.++++...--.-=
T Consensus 120 TenWNsVvDC~P~VfLiDleFG--C~ta-h~lpEl~dG~SFHvsla-r~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS 195 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFG--CCTA-HTLPELQDGQSFHVSLA-RNDCVYILGGHSLESDSRPPRLYRLKVDLLLGS 195 (337)
T ss_pred hhhcceeccCCCeEEEEecccc--cccc-ccchhhcCCeEEEEEEe-cCceEEEEccEEccCCCCCCcEEEEEEeecCCC
Confidence 123456888898876 3333 33334455667888776 566899999985443 23445666544311000
Q ss_pred EEEeCCCCCCCccceeEEEEE---CCEEEEEcccCCCCC
Q 002740 247 EWTLAPGVAPSPRYQHAAVFV---GARLHVTGGALRGGR 282 (885)
Q Consensus 247 ~w~~~~~~~P~~R~~hs~~~~---~~~i~V~GG~~~~~~ 282 (885)
-.+.+. ..+....-.++.+. .+..+|+||+....+
T Consensus 196 P~vsC~-vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ 233 (337)
T PF03089_consen 196 PAVSCT-VLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ 233 (337)
T ss_pred ceeEEE-ECCCCceEeeeeEeecCCCceEEEecccccce
Confidence 011110 01122222222222 357888999975543
No 77
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=98.41 E-value=2e-06 Score=83.00 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=77.1
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--HHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--ETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~--evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
++.+++|+||++. .+ .....+ .++++||+++++.... +.+.++..++ . ..++++.||||...
T Consensus 1 ~i~~isD~H~~~~----~~---~~~~~D------~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~~ 64 (135)
T cd07379 1 RFVCISDTHSRHR----TI---SIPDGD------VLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLTL 64 (135)
T ss_pred CEEEEeCCCCCCC----cC---cCCCCC------EEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCcC
Confidence 4789999999987 11 112222 6888999999986532 2344444332 1 23678999999642
Q ss_pred hhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhcc
Q 002740 660 INALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDL 739 (885)
Q Consensus 660 ~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dl 739 (885)
. .-+.+++++||.+.... +.
T Consensus 65 ~-------------------------------------~~~~~ilv~H~~p~~~~-----------------------~~ 84 (135)
T cd07379 65 D-------------------------------------PEDTDILVTHGPPYGHL-----------------------DL 84 (135)
T ss_pred C-------------------------------------CCCCEEEEECCCCCcCc-----------------------cc
Confidence 1 11336999999542210 00
Q ss_pred ccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002740 740 LWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 740 lWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
++ + . ...|.+.+.+++++.+.+++|-||.-.+.|++
T Consensus 85 ~~--~----------------~-~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 85 VS--S----------------G-QRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred cc--c----------------C-cccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 00 0 0 13577889999999999999999999988876
No 78
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.38 E-value=3.8e-07 Score=71.45 Aligned_cols=45 Identities=31% Similarity=0.676 Sum_probs=30.3
Q ss_pred CccccEEEEECCcEEEEEecCCCC-cccCcEEEEeCCCCCeeEEEcCC
Q 002740 152 PRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWALDTAQKPYVWQRLNP 198 (885)
Q Consensus 152 ~R~~h~~~~~~~~~lyv~GG~~~~-~~~ndv~~~d~~t~~~~W~~l~~ 198 (885)
||++|+++.+.++.+|||||.+.. ..++|+|+||++++ +|+++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEECCC
Confidence 699999999977799999999876 69999999999999 9999943
No 79
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=98.37 E-value=3.3e-06 Score=88.17 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=56.2
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+|.+++||||++..|.++++.......+ .+|++||++++|+..-++..++..|.. .+..+++++||||..
T Consensus 6 kIl~iSDiHgn~~~le~l~~~~~~~~~D------~vv~~GDl~~~g~~~~~~~~~l~~l~~-l~~pv~~V~GNhD~~ 75 (224)
T cd07388 6 YVLATSNPKGDLEALEKLVGLAPETGAD------AIVLIGNLLPKAAKSEDYAAFFRILGE-AHLPTFYVPGPQDAP 75 (224)
T ss_pred EEEEEEecCCCHHHHHHHHHHHhhcCCC------EEEECCCCCCCCCCHHHHHHHHHHHHh-cCCceEEEcCCCChH
Confidence 5999999999999999999876433333 799999999999877777777766643 234699999999975
No 80
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.35 E-value=4.9e-07 Score=70.04 Aligned_cols=46 Identities=37% Similarity=0.697 Sum_probs=40.5
Q ss_pred CcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCC
Q 002740 29 PRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPA 93 (885)
Q Consensus 29 ~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~ 93 (885)
||.+|+++++ +++||++||...... .++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~------~~~iyv~GG~~~~~~-------------~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVV------GNKIYVIGGYDGNNQ-------------PTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEE------TTEEEEEEEBESTSS-------------BEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEE------CCEEEEEeeecccCc-------------eeeeEEEEeCCCCEEEEcCCC
Confidence 7999999999 999999999998332 689999999999999999854
No 81
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=98.33 E-value=2.8e-06 Score=88.91 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=71.3
Q ss_pred CeEEEecCCCCHHHHH-HHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 582 PVKVFGDLHGQFGDLM-RLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~-~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
+|+++|||||++.... +.++..+ + + .+||+||+++. +.+++..|..+ +..++.++||||....
T Consensus 2 rIa~isDiHg~~~~~~~~~l~~~~--p-D------~Vl~~GDi~~~---~~~~~~~l~~l----~~p~~~V~GNHD~~~~ 65 (238)
T cd07397 2 RIAIVGDVHGQWDLEDIKALHLLQ--P-D------LVLFVGDFGNE---SVQLVRAISSL----PLPKAVILGNHDAWYD 65 (238)
T ss_pred EEEEEecCCCCchHHHHHHHhccC--C-C------EEEECCCCCcC---hHHHHHHHHhC----CCCeEEEcCCCccccc
Confidence 5899999999987642 3333322 2 2 79999999864 56766666554 3458999999997543
Q ss_pred hhh---cCCh------------------------------------------HHHHHHhCCCcchhhhhhhhhhccCCce
Q 002740 661 NAL---FGFR------------------------------------------LECIERMGENDGIWAWTRFNQLFNCLPL 695 (885)
Q Consensus 661 ~~~---~gf~------------------------------------------~e~~~~~~~~~~~~~~~~~~~~f~~LP~ 695 (885)
... +... .++...|+ -...++.+..+++.++.
T Consensus 66 ~~~~~k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fg---i~s~~eA~~~ive~~~~ 142 (238)
T cd07397 66 ATFRKKGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYG---VISLEESAQRIIAAAKK 142 (238)
T ss_pred ccccchHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhC---CCCHHHHHHHHHHHhhh
Confidence 210 0001 13444443 12345566677777764
Q ss_pred EEEEeCeEEEecCCCCCC
Q 002740 696 AALIEKKIICMHGGIGRS 713 (885)
Q Consensus 696 ~~~i~~~il~vHgGi~~~ 713 (885)
+......||+.|+++.-.
T Consensus 143 ~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 143 APPDLPLILLAHNGPSGL 160 (238)
T ss_pred cCCCCCeEEEeCcCCcCC
Confidence 334445799999998654
No 82
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.31 E-value=8.8e-07 Score=68.60 Aligned_cols=46 Identities=33% Similarity=0.522 Sum_probs=39.9
Q ss_pred ccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCC
Q 002740 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 258 ~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
||++|+++.++++|||+||..... ...+++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN---QPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS---SBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccC---ceeeeEEEEeCCCCEEEEcCCC
Confidence 689999999999999999998722 2368999999999999999876
No 83
>PF13854 Kelch_5: Kelch motif
Probab=98.29 E-value=1.3e-06 Score=66.11 Aligned_cols=39 Identities=31% Similarity=0.611 Sum_probs=35.3
Q ss_pred cccccceEEEEECCEEEEEcCCCC--CCCCCcEEEeeCCCC
Q 002740 325 LMRRCRHASASIGVRIYIYGGLKG--DILLDDFLVAENSPF 363 (885)
Q Consensus 325 p~~R~~hs~~~~~~~IyI~GG~~~--~~~~~D~~~ld~~~~ 363 (885)
|.+|.+|+++.++++||||||+++ ...++|+|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 669999999999999999999984 688999999998763
No 84
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.28 E-value=9e-07 Score=69.29 Aligned_cols=47 Identities=28% Similarity=0.670 Sum_probs=30.9
Q ss_pred ccCccEEEEE-CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCC
Q 002740 99 PRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (885)
Q Consensus 99 ~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p 150 (885)
||++|+++.+ ++.|||+||.+..+..++|+|+||+.++ +|+++ +++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~--~W~~~---~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETN--TWTRL---PSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTT--EEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCC--EEEEC---CCCC
Confidence 6999999999 4899999999877789999999999994 59998 5555
No 85
>PF13854 Kelch_5: Kelch motif
Probab=98.24 E-value=2e-06 Score=65.04 Aligned_cols=40 Identities=43% Similarity=0.696 Sum_probs=36.3
Q ss_pred CCcccCccEEEEECCEEEEEcCcC-CCCCccccEEEEEecC
Q 002740 96 PPSPRAAHAAAAVGTMVVFQGGIG-PAGHSTDDLYVLDLTN 135 (885)
Q Consensus 96 ~P~~R~~ha~~~~~~~iyv~GG~~-~~~~~~~dl~~~D~~~ 135 (885)
+|.+|++|++++++++|||+||.. .....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 478999999999999999999987 4778899999999976
No 86
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.22 E-value=1.1e-05 Score=75.97 Aligned_cols=117 Identities=23% Similarity=0.350 Sum_probs=82.7
Q ss_pred EEEecCCCCHHHHHHHH--HHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchh
Q 002740 584 KVFGDLHGQFGDLMRLF--DEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADIN 661 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il--~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~ 661 (885)
+++||+|+......... ........+ .+|++||+++.+....+........+......++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~------~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPD------FVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCC------EEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 47999999999888765 222222222 68999999999998877766544444456678999999999
Q ss_pred hhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhcccc
Q 002740 662 ALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLW 741 (885)
Q Consensus 662 ~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllW 741 (885)
++++|..+.+.......
T Consensus 70 -----------------------------------------i~~~H~~~~~~~~~~~~---------------------- 86 (131)
T cd00838 70 -----------------------------------------ILLTHGPPYDPLDELSP---------------------- 86 (131)
T ss_pred -----------------------------------------EEEeccCCCCCchhhcc----------------------
Confidence 88899988655210000
Q ss_pred CCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002740 742 SDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 742 sdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
. .......+...+...+.+++|-||.-....+.
T Consensus 87 ~--------------------~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 87 D--------------------EDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred c--------------------chhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 0 00155778888999999999999987755544
No 87
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.04 E-value=0.00018 Score=72.76 Aligned_cols=59 Identities=27% Similarity=0.437 Sum_probs=42.4
Q ss_pred CeEEEecCC-CCHH-----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCC
Q 002740 582 PVKVFGDLH-GQFG-----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 582 ~i~vvGDiH-G~~~-----~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
.|.||+|.| |.-. .+.++++. ...+ .++.+||+++ .+++.+|..++ ..++.++|||
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~---~~~d------~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~ 62 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP---GKIQ------HVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDF 62 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc---CCCC------EEEECCCCCC-----HHHHHHHHhhC----CceEEEECCC
Confidence 378999999 6543 35566554 1222 7899999987 77777776652 2599999999
Q ss_pred ccc
Q 002740 656 EAA 658 (885)
Q Consensus 656 E~~ 658 (885)
|..
T Consensus 63 D~~ 65 (178)
T cd07394 63 DEN 65 (178)
T ss_pred Ccc
Confidence 963
No 88
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.04 E-value=0.00028 Score=74.34 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=100.7
Q ss_pred EEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCC----CCeeEEEcCCCCCCC
Q 002740 128 LYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQ----KPYVWQRLNPEGDRP 203 (885)
Q Consensus 128 l~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t----~~~~W~~l~~~g~~P 203 (885)
-..||+.+++ ++.+. ...--++.+-+++.++.+++.||... -...+-.|++.+ . .|.+.... +-
T Consensus 48 s~~yD~~tn~--~rpl~----v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~--~w~e~~~~--m~ 115 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLT----VQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTC--DWTESPND--MQ 115 (243)
T ss_pred EEEEecCCCc--EEecc----CCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCC--CceECccc--cc
Confidence 4578888854 77773 33444444555667778999999855 234566677654 3 68877543 56
Q ss_pred CccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCC---CCeeEEEeCC---CCCCCccceeEEEEECCEEEEEccc
Q 002740 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHR---NGQWEWTLAP---GVAPSPRYQHAAVFVGARLHVTGGA 277 (885)
Q Consensus 204 ~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~---~~~W~w~~~~---~~~P~~R~~hs~~~~~~~i~V~GG~ 277 (885)
.+|-|.++....||+++|+||.. +..+.+.... ...+.|..+. ...+...|=+....-+++||+++..
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSN------NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCccccceECCCCCEEEEeCcC------CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 89999999999999999999986 2334444432 2233332222 1223444545555558999999883
Q ss_pred CCCCCCccCCCcEEEEECCCCeE-EEccCCccc
Q 002740 278 LRGGRAIEGEAAVAVLDTAAGVW-LDRNGLVTS 309 (885)
Q Consensus 278 ~~~~~~~~~~~~v~~yD~~t~~W-~~v~~~~~~ 309 (885)
.-.+||..++++ +.++.++..
T Consensus 190 -----------~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 190 -----------GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred -----------CcEEEeCCCCeEEeeCCCCCCC
Confidence 256789999987 788888653
No 89
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=97.97 E-value=0.00014 Score=73.78 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=44.5
Q ss_pred eEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-HHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 583 VKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-LETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s-~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
|.+++||||++..|.+ ........+ .+|+.||++++|... .+.+..|. ..+..++.++||||...
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D------~vv~~GDl~~~~~~~~~~~~~~l~----~~~~p~~~v~GNHD~~~ 66 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEAD------AVIVAGDITNFGGKEAAVEINLLL----AIGVPVLAVPGNCDTPE 66 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCC------EEEECCCccCcCCHHHHHHHHHHH----hcCCCEEEEcCCCCCHH
Confidence 5789999999998876 222212222 688999999999763 33333332 23456999999999754
No 90
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.94 E-value=0.0015 Score=68.33 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=105.8
Q ss_pred CCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCc--------EEEecCCCCC
Q 002740 25 DAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK--------WTRIRPAGEP 96 (885)
Q Consensus 25 ~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~--------W~~l~~~~~~ 96 (885)
-+|+.|+-..+..-.........-++-||.+.+.+ +.+.+|++...++. +++-.-.|+.
T Consensus 18 YLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNE-------------lS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdv 84 (337)
T PF03089_consen 18 YLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNE-------------LSSSLYILSVDSRGCNKKVTLCCQEKELVGDV 84 (337)
T ss_pred cCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcc-------------cccceEEEEeecCCCCceeEEEEecceecCCC
Confidence 46777765444442333333445667788988876 67889998776543 3333445789
Q ss_pred CcccCccEEEEE----CCEEEEEcCcC--CCC-----------CccccEEEEEecCCccEEEEEeecCCCCCCccccEEE
Q 002740 97 PSPRAAHAAAAV----GTMVVFQGGIG--PAG-----------HSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMD 159 (885)
Q Consensus 97 P~~R~~ha~~~~----~~~iyv~GG~~--~~~-----------~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~ 159 (885)
|.+|++|++.++ +..+++|||.+ +.+ .+.-.++.+|+.-.-.+=..+ ..+...-+.|.+.
T Consensus 85 P~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l---pEl~dG~SFHvsl 161 (337)
T PF03089_consen 85 PEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL---PELQDGQSFHVSL 161 (337)
T ss_pred CcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc---hhhcCCeEEEEEE
Confidence 999999999998 34788999964 111 122357777776543111222 4445556666664
Q ss_pred EECCcEEEEEecCCC--CcccCcEEEEeCCC--CCeeEEEcCCCCCCCCccccceEEEe--cCCEEEEEccCCCCC
Q 002740 160 LVSQRYLVSVSGNDG--KRVLSDAWALDTAQ--KPYVWQRLNPEGDRPSARMYATASAR--SDGMFLLCGGRDASG 229 (885)
Q Consensus 160 ~~~~~~lyv~GG~~~--~~~~ndv~~~d~~t--~~~~W~~l~~~g~~P~~r~~hsa~~~--~~~~l~v~GG~~~~~ 229 (885)
.-+ +.+|++||..- +.....++++..+- .. -+-..... +......+|.+. ....++|+||+..+.
T Consensus 162 ar~-D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS-P~vsC~vl---~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 162 ARN-DCVYILGGHSLESDSRPPRLYRLKVDLLLGS-PAVSCTVL---QGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred ecC-ceEEEEccEEccCCCCCCcEEEEEEeecCCC-ceeEEEEC---CCCceEeeeeEeecCCCceEEEecccccc
Confidence 444 49999999743 23445566653321 10 01111111 222233333322 445788899986654
No 91
>smart00612 Kelch Kelch domain.
Probab=97.89 E-value=1.7e-05 Score=60.87 Aligned_cols=47 Identities=32% Similarity=0.600 Sum_probs=38.8
Q ss_pred EEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECC
Q 002740 47 RLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGT 110 (885)
Q Consensus 47 ~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~ 110 (885)
+||++||..... .++++++||+.+++|+.++ ++|.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ--------------RLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc--------------eeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 489999986422 5789999999999999877 4568999999988764
No 92
>smart00612 Kelch Kelch domain.
Probab=97.74 E-value=4.9e-05 Score=58.29 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=38.5
Q ss_pred EEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEe
Q 002740 165 YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASAR 214 (885)
Q Consensus 165 ~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~ 214 (885)
+||++||.++...++++++||+.++ +|+.+.++ |.+|..|++++.
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~---~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN--KWTPLPSM---PTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC--eEccCCCC---CCccccceEEEe
Confidence 3899999887778899999999999 99988754 789999988765
No 93
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.74 E-value=0.00028 Score=67.44 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=40.0
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCc
Q 002740 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.|++|.||..+.+.++.... ...+ .++++||+. .+++.++..++ ...++.++||||
T Consensus 1 ~viSDtH~~~~~~~~~~~~~--~~~d------~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D 56 (129)
T cd07403 1 LVISDTESPALYSPEIKVRL--EGVD------LILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHD 56 (129)
T ss_pred CeeccccCccccchHHHhhC--CCCC------EEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCc
Confidence 38999999988777776652 2223 799999984 35566665552 235899999999
No 94
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.72 E-value=0.0012 Score=69.50 Aligned_cols=163 Identities=13% Similarity=0.150 Sum_probs=100.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecC--CccEEEEEeecCCCCCC
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTN--DKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~--~~~~W~~l~~~~~~p~~ 152 (885)
..-..||+.+++++.+....+. -+++|+ ..-++.+++.||...+ .+.+-.|++.+ ....|.+.. ..+..+
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~--FCSgg~-~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~--~~m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDT--FCSGGA-FLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESP--NDMQSG 117 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCC--cccCcC-CCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECc--ccccCC
Confidence 3455799999999998765432 234433 2236799999997542 34466677653 223587762 348999
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEeCC---CCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCC
Q 002740 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA---QKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (885)
Q Consensus 153 R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~---t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~ 229 (885)
|...++..+.++.++|+||.... ..+.+... ..++.|..+......-..-.|-.+.+..+|+||+++..
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~---- 189 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR---- 189 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence 99999999999999999998721 22333321 12234444432211123344556667789999999874
Q ss_pred CcccceEEEEcCCCCeeEE-EeCCCCCCCccc
Q 002740 230 APLADAYGLLMHRNGQWEW-TLAPGVAPSPRY 260 (885)
Q Consensus 230 ~~l~dv~~l~~~~~~~W~w-~~~~~~~P~~R~ 260 (885)
+.+.||...+ ++ ..++..+-.+|.
T Consensus 190 ----~s~i~d~~~n---~v~~~lP~lPg~~R~ 214 (243)
T PF07250_consen 190 ----GSIIYDYKTN---TVVRTLPDLPGGPRN 214 (243)
T ss_pred ----CcEEEeCCCC---eEEeeCCCCCCCcee
Confidence 3445566655 44 445555434554
No 95
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=97.60 E-value=0.00016 Score=77.05 Aligned_cols=206 Identities=18% Similarity=0.234 Sum_probs=102.4
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCC-------CCChHHHHHHHHHHHhcCCCcE
Q 002740 582 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-------GQHSLETITLLLALKIEYPENV 648 (885)
Q Consensus 582 ~i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDR-------G~~s~evl~ll~~lk~~~p~~v 648 (885)
++++++|+|... ..|.++++..... .+ .++++||++|. .+...+++.+|..|+.. +..+
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~-~d------~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v 73 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQ-AD------ALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPC 73 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeE
Confidence 589999999542 2455555432211 12 68999999985 23356777777777633 3479
Q ss_pred EEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEE-eCeEEEecCCCCCCCcCHHH-hhcccC-
Q 002740 649 HLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRSIHSVEQ-IEKLER- 725 (885)
Q Consensus 649 ~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i-~~~il~vHgGi~~~~~~~~~-i~~~~r- 725 (885)
++++||||..... ...+..+ . .++.. |....+ +.+++++||-.-+.....-+ ++++-|
T Consensus 74 ~~v~GNHD~~~~~-------~~~~~~g----~-------~~l~~-~~~~~~~g~~i~l~HGd~~~~~d~~y~~~r~~~r~ 134 (241)
T PRK05340 74 YFMHGNRDFLLGK-------RFAKAAG----M-------TLLPD-PSVIDLYGQRVLLLHGDTLCTDDKAYQRFRRKVRN 134 (241)
T ss_pred EEEeCCCchhhhH-------HHHHhCC----C-------EEeCC-cEEEEECCEEEEEECCcccccCCHHHHHHHHHHhC
Confidence 9999999974321 1111111 1 11111 222233 35799999987653221111 222212
Q ss_pred CcccCCCCcchhccccCCCCCC-CCC-CCcc-----cCC-CCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEec
Q 002740 726 PITMDAGSIILMDLLWSDPTEN-DSI-EGLR-----PNA-RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFA 797 (885)
Q Consensus 726 p~~~~~~~~~~~dllWsdP~~~-~~~-~~~~-----~n~-rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~ 797 (885)
|.. ..-++. -|... -.+ ..+. .+. +..-.....++++.+.+++.+.+.+|-||.-.+.=.....
T Consensus 135 ~~~-------~~~~~~-~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~~~~ 206 (241)
T PRK05340 135 PWL-------QWLFLA-LPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIHQLQA 206 (241)
T ss_pred HHH-------HHHHHh-CCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcceeeccC
Confidence 210 000000 01000 000 0000 001 1111233567888899999999999999986654333322
Q ss_pred CCeEEEEeecccccCCCCCeEEEEEEcCc
Q 002740 798 QGQLITLFSATNYCGTANNAGAILVVGRG 826 (885)
Q Consensus 798 ~~~~itvfSa~~y~~~~~n~ga~l~~~~~ 826 (885)
++.-++-.+-.+. ...+.++.++.+
T Consensus 207 ~~~~~~~~~lgdw----~~~~~~~~~~~~ 231 (241)
T PRK05340 207 GGQPATRIVLGDW----HEQGSVLKVDAD 231 (241)
T ss_pred CCcceEEEEeCCC----CCCCeEEEEECC
Confidence 3211222222222 223677777665
No 96
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=97.55 E-value=0.00046 Score=72.99 Aligned_cols=207 Identities=15% Similarity=0.179 Sum_probs=100.2
Q ss_pred eEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-----CC--hHHHHHHHHHHHhcCCCcEE
Q 002740 583 VKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-----QH--SLETITLLLALKIEYPENVH 649 (885)
Q Consensus 583 i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG-----~~--s~evl~ll~~lk~~~p~~v~ 649 (885)
+++++|+|... ..|++.+...... .+ .++++||++|.. +. ..++..+|..|+.. +..++
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~~-~d------~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~ 72 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEARK-AD------ALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCY 72 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhcc-CC------EEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEE
Confidence 36899999543 2345555443211 22 688999999952 11 23556666666543 45799
Q ss_pred EeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCCCC-cCHHHhhcc-cCCc
Q 002740 650 LIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSI-HSVEQIEKL-ERPI 727 (885)
Q Consensus 650 llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~-~~~~~i~~~-~rp~ 727 (885)
++.||||...-. ...+.. +. .++..--..-+-+.+++++||-.-..- ..-.-.+++ ..|.
T Consensus 73 ~v~GNHD~~~~~-------~~~~~~----gi-------~~l~~~~~~~~~g~~ill~HGd~~~~~d~~y~~~r~~~r~~~ 134 (231)
T TIGR01854 73 FMHGNRDFLIGK-------RFAREA----GM-------TLLPDPSVIDLYGQKVLLMHGDTLCTDDTAYQAFRAKVHQPW 134 (231)
T ss_pred EEcCCCchhhhH-------HHHHHC----CC-------EEECCCEEEEECCEEEEEEcCccccCCCHHHHHHHHHHhCHH
Confidence 999999974211 001111 11 122221111222468999999764311 111111222 1121
Q ss_pred cc------CC-CCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCe
Q 002740 728 TM------DA-GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQ 800 (885)
Q Consensus 728 ~~------~~-~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~ 800 (885)
.. +. ....+...+++-.... .. .+..-.....+..++++++..+.+++|-||.-.+.=+.+..++.
T Consensus 135 ~~~~~~~l~~~~r~~l~~~~~~~s~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~ 207 (231)
T TIGR01854 135 LQRLFLHLPLAVRVKLARKIRAESRAD---KQ----MKSQDIMDVNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQ 207 (231)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHh---cC----CCcchhhCCCHHHHHHHHHHcCCCEEEECCccCcceeecccCCC
Confidence 00 00 0001222333322110 00 00001233567889999999999999999986654343322332
Q ss_pred EEEEeecccccCCCCCeEEEEEEcCc
Q 002740 801 LITLFSATNYCGTANNAGAILVVGRG 826 (885)
Q Consensus 801 ~itvfSa~~y~~~~~n~ga~l~~~~~ 826 (885)
-++-..-.+.. ..+.+++++++
T Consensus 208 ~~~~~~lgdW~----~~~~~~~~~~~ 229 (231)
T TIGR01854 208 PATRIVLGDWY----RQGSILRVDAD 229 (231)
T ss_pred ccEEEEECCCc----cCCeEEEEcCC
Confidence 22333333332 22455666543
No 97
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.54 E-value=1.8e-05 Score=88.48 Aligned_cols=243 Identities=11% Similarity=-0.011 Sum_probs=159.3
Q ss_pred ccCHHHHHHHHHHHHHHHhcCCceeeecC----CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC
Q 002740 553 FLDSYEVGELCYAAEQIFMQEPTVLQLRA----PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ 628 (885)
Q Consensus 553 ~~~~~~~~~l~~~~~~~~~~ep~~l~~~~----~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~ 628 (885)
.|...++..+++.+.+++..+|+...+.+ -.+.++|.||.+.|+.++++.- +... .-|++-|++++++.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d---P~~~----K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD---PTYI----KAYVRRGTAVMALG 86 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC---chhh----heeeeccHHHHhHH
Confidence 56778899999999999999998887643 4889999999999999988764 2211 15999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecC
Q 002740 629 HSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHG 708 (885)
Q Consensus 629 ~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHg 708 (885)
...+.+..|...+...|....+.|++||+..+-..++|..+....+++. +..++..+...+.. |++....+.++=-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~-~s~~~~~~~~~~~~-~i~~~y~g~~le~~- 163 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDK-KSVVEMKIDEEDMD-LIESDYSGPVLEDH- 163 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCC-cccccccccccccc-ccccccCCcccccc-
Confidence 9999999999999999999999999999999999999988776666543 22233222222211 24444443222222
Q ss_pred CCC--------------CCC-----cC-HHHh----hcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCceEE
Q 002740 709 GIG--------------RSI-----HS-VEQI----EKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPGLVT 764 (885)
Q Consensus 709 Gi~--------------~~~-----~~-~~~i----~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~ 764 (885)
-+. ..+ .+ +++. +.+..++++. .-.|..|+++... -..|-+..|+.+ ..
T Consensus 164 kvt~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~----~~~d~~~sv~gd~--hGqfydl~nif~-l~ 236 (476)
T KOG0376|consen 164 KVTLEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEIS----VPGDVKISVCGDT--HGQFYDLLNIFE-LN 236 (476)
T ss_pred hhhHHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEee----cCCCceEEecCCc--cccccchhhhHh-hc
Confidence 110 000 00 1111 1112222221 3457788888652 122334455555 34
Q ss_pred eCHHHHHHHHHHcCCeEEEEeccccc-----------c-ceEEec---CCeEEEEeecccccC
Q 002740 765 FGPDRVSDFCKRNKLQLIIRAHECVM-----------D-GFERFA---QGQLITLFSATNYCG 812 (885)
Q Consensus 765 fg~~~~~~fl~~~~l~~iiR~H~~~~-----------~-G~~~~~---~~~~itvfSa~~y~~ 812 (885)
.+++....||.+.++.-+++.|.-+. + +|.... .+.+++||+++.+|-
T Consensus 237 g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~ 299 (476)
T KOG0376|consen 237 GLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVK 299 (476)
T ss_pred CCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchh
Confidence 56777778888888888888886442 1 121111 235899999998874
No 98
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=97.53 E-value=0.0053 Score=64.09 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred eCHHHHHHHHHHc-CCeEEEEeccccccceEEe-----cCCeEEEEeecccccCCCCCe-EEEEEEcCc-ceEEeEEecC
Q 002740 765 FGPDRVSDFCKRN-KLQLIIRAHECVMDGFERF-----AQGQLITLFSATNYCGTANNA-GAILVVGRG-LVVVPKLIHP 836 (885)
Q Consensus 765 fg~~~~~~fl~~~-~l~~iiR~H~~~~~G~~~~-----~~~~~itvfSa~~y~~~~~n~-ga~l~~~~~-~~~~~~~~~~ 836 (885)
.+...+.+.++++ ++++++-||.-. .+.... .++.+..+++....-...+|. =.++.++.+ .++..+.+.|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~-~~~~~~~~~~~~g~~v~~~~~~~q~~~~~g~~~~r~~~f~~~~~~i~~~tysp 213 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHG-AGRTTLVSVGDAGRTVHQMLADYQGEPNGGNGFLRLLEFDPDNNKIDVRTYSP 213 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCC-CceEEEcccCCCCCEeeEEeecccCCCCCCcceEEEEEEecCCCEEEEEeCCC
Confidence 3566788899988 899999999644 233322 134455554432111111221 145556665 4666666654
No 99
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=97.51 E-value=0.0016 Score=63.22 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceE
Q 002740 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
+.+.+.+++++.++++++-||.-....+.
T Consensus 101 ~~~~~~~~l~~~~~~~~l~GH~H~~~~~~ 129 (144)
T cd07400 101 DAGDALKLLAEAGVDLVLHGHKHVPYVGN 129 (144)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCcCeee
Confidence 55778899999999999999987755444
No 100
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=97.49 E-value=9.3e-05 Score=73.93 Aligned_cols=67 Identities=27% Similarity=0.231 Sum_probs=45.7
Q ss_pred eEEEecCCCCHHHHHHHHHH-hCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 583 VKVFGDLHGQFGDLMRLFDE-YGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~-~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+.+++|||+....+...+.. ......+ .++++||+++++.....+. ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d------~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDAD------ILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCC------EEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 46899999998877665431 1222222 6888999999987765544 2222 23446799999999986
No 101
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=97.41 E-value=0.00033 Score=75.93 Aligned_cols=70 Identities=19% Similarity=0.050 Sum_probs=50.0
Q ss_pred CCeEEEecCCCC----HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC--CChHHHHHHHHHHHhcCCCcEEEeccC
Q 002740 581 APVKVFGDLHGQ----FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGN 654 (885)
Q Consensus 581 ~~i~vvGDiHG~----~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG--~~s~evl~ll~~lk~~~p~~v~llrGN 654 (885)
-+|.+++|||.. ...+.++++.+.....+ -++++|||+|++ ....++..+|..|+... .++.+.||
T Consensus 50 ~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pD------lVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GN 121 (271)
T PRK11340 50 FKILFLADLHYSRFVPLSLISDAIALGIEQKPD------LILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGN 121 (271)
T ss_pred cEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCC------EEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCC
Confidence 359999999976 45577777665433333 688999999954 33345667777776544 49999999
Q ss_pred Cccc
Q 002740 655 HEAA 658 (885)
Q Consensus 655 HE~~ 658 (885)
||..
T Consensus 122 HD~~ 125 (271)
T PRK11340 122 HDRP 125 (271)
T ss_pred CCcc
Confidence 9964
No 102
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.30 E-value=0.042 Score=57.91 Aligned_cols=203 Identities=8% Similarity=0.056 Sum_probs=105.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCcc-EEEEEC----C-EEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCC
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAH-AAAAVG----T-MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ 148 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~h-a~~~~~----~-~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~ 148 (885)
..++++||.|++|..++....++.....+ .+...+ + +|+.+.... .......+.+|++.++ +|..+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~~~--~Wr~~~~~-- 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLGSN--SWRTIECS-- 88 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeCCC--CccccccC--
Confidence 46899999999999997432110111111 122222 2 565554421 1123457889999985 49988421
Q ss_pred CCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEE-cCCCCCCCCccc---cceEEEecCCEEEEEcc
Q 002740 149 GPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSARM---YATASARSDGMFLLCGG 224 (885)
Q Consensus 149 ~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~-l~~~g~~P~~r~---~hsa~~~~~~~l~v~GG 224 (885)
.+.-......+.+++ .+|-+...........+..||+.++ +|.. +.. |..+. .+...+..+|+|.+...
T Consensus 89 ~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~IvsFDl~~E--~f~~~i~~----P~~~~~~~~~~~L~~~~G~L~~v~~ 161 (230)
T TIGR01640 89 PPHHPLKSRGVCING-VLYYLAYTLKTNPDYFIVSFDVSSE--RFKEFIPL----PCGNSDSVDYLSLINYKGKLAVLKQ 161 (230)
T ss_pred CCCccccCCeEEECC-EEEEEEEECCCCCcEEEEEEEcccc--eEeeeeec----CccccccccceEEEEECCEEEEEEe
Confidence 121111222445565 5554443222111125899999999 8885 432 22221 12334445688877665
Q ss_pred CCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccce----eEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC
Q 002740 225 RDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQ----HAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 225 ~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~----hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (885)
.... ..-++|.++......|+..-.-..++.+... ...+..+++|++.-+. .. ..-+..||+.++
T Consensus 162 ~~~~--~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~------~~~~~~y~~~~~ 230 (230)
T TIGR01640 162 KKDT--NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-EN------PFYIFYYNVGEN 230 (230)
T ss_pred cCCC--CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CC------ceEEEEEeccCC
Confidence 3221 2368999986555566533222222222221 2334446788776542 10 113888998764
No 103
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=97.28 E-value=0.00041 Score=72.69 Aligned_cols=70 Identities=29% Similarity=0.289 Sum_probs=49.7
Q ss_pred CeEEEecCCCCHH----HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-HHHHHHHHHHhcCCCcEEEeccCCc
Q 002740 582 PVKVFGDLHGQFG----DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 582 ~i~vvGDiHG~~~----~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~-evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
++.+++|+|.... .+.++++.+.....+ -+++.||++|.+.... ++..++..++ .+..++++.||||
T Consensus 3 ~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d------~vl~~GD~~~~~~~~~~~~~~~l~~l~--~~~~v~~v~GNHD 74 (223)
T cd07385 3 RIAHLSDLHLGPFVSRERLERLVEKINALKPD------LVVLTGDLVDGSVDVLELLLELLKKLK--APLGVYAVLGNHD 74 (223)
T ss_pred EEEEEeecCCCccCCHHHHHHHHHHHhccCCC------EEEEcCcccCCcchhhHHHHHHHhccC--CCCCEEEECCCcc
Confidence 5899999998743 566776665432222 6888999999987765 5555555443 3356999999999
Q ss_pred ccc
Q 002740 657 AAD 659 (885)
Q Consensus 657 ~~~ 659 (885)
...
T Consensus 75 ~~~ 77 (223)
T cd07385 75 YYS 77 (223)
T ss_pred ccc
Confidence 853
No 104
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=97.24 E-value=0.013 Score=58.81 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=43.7
Q ss_pred CeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 582 PVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.|.|++|.||...+..+..+.......+ .+|.+||++...... +|......+++.++||.|...
T Consensus 3 ~ilviSDtH~~~~~~~~~~~~~~~~~~d------~vih~GD~~~~~~~~--------~l~~~~~~~i~~V~GN~D~~~ 66 (172)
T COG0622 3 KILVISDTHGPLRAIEKALKIFNLEKVD------AVIHAGDSTSPFTLD--------ALEGGLAAKLIAVRGNCDGEV 66 (172)
T ss_pred EEEEEeccCCChhhhhHHHHHhhhcCCC------EEEECCCcCCccchH--------HhhcccccceEEEEccCCCcc
Confidence 5899999999997655555554444444 688899999754422 111112368999999999854
No 105
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.10 E-value=0.33 Score=55.59 Aligned_cols=219 Identities=19% Similarity=0.234 Sum_probs=119.3
Q ss_pred CcEEEEECCCCc--EEEecCCCCCC-----cccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecC
Q 002740 75 NSVHLYDVLTRK--WTRIRPAGEPP-----SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (885)
Q Consensus 75 ~dv~~yD~~t~~--W~~l~~~~~~P-----~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~ 147 (885)
..+++||..+++ |+.-....... .++...+.++.+++||+.+.. ..+++||..+.+..|+.-.
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~--- 148 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQTKV--- 148 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-------CEEEEEECCCCCCcccccC---
Confidence 468899988764 88532210000 112233456678899885431 3599999998777897642
Q ss_pred CCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCC
Q 002740 148 QGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 148 ~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~ 227 (885)
+... .+..++.++.+|+..+. ..++.||.++....|+.-..... ...+...+. ++.++.+|+..+
T Consensus 149 --~~~~--~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP-~v~~~~v~~~~~--- 213 (394)
T PRK11138 149 --AGEA--LSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPS-LTLRGESAP-ATAFGGAIVGGD--- 213 (394)
T ss_pred --CCce--ecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCc-ccccCCCCC-EEECCEEEEEcC---
Confidence 1111 12223334477764332 35999999998888988643210 011111222 234566666433
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCC----cc---ceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe-
Q 002740 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPS----PR---YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV- 299 (885)
Q Consensus 228 ~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~----~R---~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~- 299 (885)
-..++.++.. +|+-.|......+.. .| ...+-++.++.+|+.+. ...++++|+.+.+
T Consensus 214 ----~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----------~g~l~ald~~tG~~ 278 (394)
T PRK11138 214 ----NGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----------NGNLVALDLRSGQI 278 (394)
T ss_pred ----CCEEEEEEcc-CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----------CCeEEEEECCCCCE
Confidence 1235666654 445455543221110 01 12344566888888653 1358999998864
Q ss_pred -EEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCCCCCcEEEeeCCC
Q 002740 300 -WLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 362 (885)
Q Consensus 300 -W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~ 362 (885)
|+.-. .. . ...+..+++||+... + ..++.+|..+
T Consensus 279 ~W~~~~--~~------------------~---~~~~~~~~~vy~~~~-~-----g~l~ald~~t 313 (394)
T PRK11138 279 VWKREY--GS------------------V---NDFAVDGGRIYLVDQ-N-----DRVYALDTRG 313 (394)
T ss_pred EEeecC--CC------------------c---cCcEEECCEEEEEcC-C-----CeEEEEECCC
Confidence 87521 11 0 123567889998753 2 3477777654
No 106
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=97.05 E-value=0.0013 Score=69.90 Aligned_cols=68 Identities=25% Similarity=0.190 Sum_probs=46.3
Q ss_pred CeEEEecCCCCH------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCC
Q 002740 582 PVKVFGDLHGQF------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 582 ~i~vvGDiHG~~------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
+|.+++|+|..+ ..|.++++.+.-...+ -+|+.||++++.+...+++..|..+ .+..++++.|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d------~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKID------HLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCC------EEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCC
Confidence 478999999763 1245555555322223 6899999999876666655555443 345799999999
Q ss_pred ccc
Q 002740 656 EAA 658 (885)
Q Consensus 656 E~~ 658 (885)
|..
T Consensus 72 D~~ 74 (239)
T TIGR03729 72 DML 74 (239)
T ss_pred CCC
Confidence 974
No 107
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.04 E-value=0.29 Score=56.05 Aligned_cols=217 Identities=17% Similarity=0.206 Sum_probs=119.2
Q ss_pred CcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 75 NSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yD~~t~--~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
+.++.+|..++ .|+.-. .+ . ...+.++.++.+|+..+. ..++.||..+.+..|..-.. .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~-~~---~--~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~-~~~~~~ 195 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKV-AG---E--ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLD-VPSLTL 195 (394)
T ss_pred CEEEEEECCCCCCcccccC-CC---c--eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCC-CCcccc
Confidence 56999999876 487532 11 1 122334567888885432 35999999998888987521 111111
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCC--CCCCCccc--cceEEEecCCEEEEEccCCCC
Q 002740 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDAS 228 (885)
Q Consensus 153 R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~--g~~P~~r~--~hsa~~~~~~~l~v~GG~~~~ 228 (885)
+...+-++.+ +.+|+ +..+ ..++.+|.++....|+.-... +.....|. ..+.-++.++.+|+.+. +
T Consensus 196 ~~~~sP~v~~-~~v~~-~~~~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~-- 265 (394)
T PRK11138 196 RGESAPATAF-GGAIV-GGDN-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-N-- 265 (394)
T ss_pred cCCCCCEEEC-CEEEE-EcCC-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-C--
Confidence 2122233334 35655 3332 358889998887778753211 10000011 11222345778887542 1
Q ss_pred CCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC--eEEEccCC
Q 002740 229 GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNGL 306 (885)
Q Consensus 229 ~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~v~~~ 306 (885)
..++.++..+ |+-.|....+.. ...+..++++|+... ...++++|..+. .|+.-...
T Consensus 266 ----g~l~ald~~t-G~~~W~~~~~~~------~~~~~~~~~vy~~~~----------~g~l~ald~~tG~~~W~~~~~~ 324 (394)
T PRK11138 266 ----GNLVALDLRS-GQIVWKREYGSV------NDFAVDGGRIYLVDQ----------NDRVYALDTRGGVELWSQSDLL 324 (394)
T ss_pred ----CeEEEEECCC-CCEEEeecCCCc------cCcEEECCEEEEEcC----------CCeEEEEECCCCcEEEcccccC
Confidence 3477887763 444565542221 134567899998753 245999999876 47642211
Q ss_pred cccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCCCCCcEEEeeCCC
Q 002740 307 VTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 362 (885)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~ 362 (885)
.+...+.++.+++||+... ++ .++.+|..+
T Consensus 325 --------------------~~~~~sp~v~~g~l~v~~~-~G-----~l~~ld~~t 354 (394)
T PRK11138 325 --------------------HRLLTAPVLYNGYLVVGDS-EG-----YLHWINRED 354 (394)
T ss_pred --------------------CCcccCCEEECCEEEEEeC-CC-----EEEEEECCC
Confidence 2233445567888887432 33 466677554
No 108
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.00 E-value=0.0026 Score=63.81 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=29.9
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
.++++||++++|..... +.+|.++ +..+++++||||....
T Consensus 45 ~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v~GNHD~~~~ 84 (168)
T cd07390 45 TVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLIKGNHDSSLE 84 (168)
T ss_pred EEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEEeCCCCchhh
Confidence 79999999999986644 4444333 3579999999997543
No 109
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.91 E-value=0.12 Score=54.50 Aligned_cols=188 Identities=10% Similarity=0.152 Sum_probs=101.8
Q ss_pred CCCcccccceEecCCCCCCCcccce--EEEecccc-CCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCc
Q 002740 10 APSYRTLETYWDTDEDAPGPRCGHT--LTAVAATK-TTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRK 86 (885)
Q Consensus 10 ~~~y~~~~~~w~~~~~~P~~R~~ht--~~~i~~~~-~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~ 86 (885)
...+||.|++|...+..+.++..+. ...++-.. ...=||+-+....... ....+++|+..+++
T Consensus 16 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--------------~~~~~~Vys~~~~~ 81 (230)
T TIGR01640 16 LVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--------------NQSEHQVYTLGSNS 81 (230)
T ss_pred EEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--------------CCccEEEEEeCCCC
Confidence 3467999999998876544322111 11121111 1133555554332111 23578899999999
Q ss_pred EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEE-EeecCCCCCCc----cccEEEEE
Q 002740 87 WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR-VVVQGQGPGPR----YGHVMDLV 161 (885)
Q Consensus 87 W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~-l~~~~~~p~~R----~~h~~~~~ 161 (885)
|+.+... ++........+.+++.+|.+.....+ .....+..||+.+.+ |.. ++ +|..+ ....++.+
T Consensus 82 Wr~~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~--f~~~i~----~P~~~~~~~~~~~L~~~ 152 (230)
T TIGR01640 82 WRTIECS--PPHHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSER--FKEFIP----LPCGNSDSVDYLSLINY 152 (230)
T ss_pred ccccccC--CCCccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccce--Eeeeee----cCccccccccceEEEEE
Confidence 9998732 22211222377789988887753221 111269999999965 774 52 23322 23455566
Q ss_pred CCcEEEEEecCCCCcccCcEEEEe-CCCCCeeEEEcCCCCCCCCccc---cceEEEecCCEEEEEcc
Q 002740 162 SQRYLVSVSGNDGKRVLSDAWALD-TAQKPYVWQRLNPEGDRPSARM---YATASARSDGMFLLCGG 224 (885)
Q Consensus 162 ~~~~lyv~GG~~~~~~~ndv~~~d-~~t~~~~W~~l~~~g~~P~~r~---~hsa~~~~~~~l~v~GG 224 (885)
++ +|.++....... .-++|+++ -... .|+++-.....+.+.. .....+..++.+++...
T Consensus 153 ~G-~L~~v~~~~~~~-~~~IWvl~d~~~~--~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 153 KG-KLAVLKQKKDTN-NFDLWVLNDAGKQ--EWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred CC-EEEEEEecCCCC-cEEEEEECCCCCC--ceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 64 666665432211 14789886 3355 6988744322122222 12344556777777654
No 110
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=96.85 E-value=0.047 Score=58.80 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEE-EEEEcCcc
Q 002740 767 PDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGA-ILVVGRGL 827 (885)
Q Consensus 767 ~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga-~l~~~~~~ 827 (885)
...+.+.|++.++++++-||.-....... +|--.-+-.++.++...++.|. ++.|+++.
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~~ 254 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTEDK 254 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCCc
Confidence 45678888999999999999887665432 3321112233344333334443 56665443
No 111
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=96.84 E-value=0.0023 Score=68.69 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=44.8
Q ss_pred eEEEecCCCCHHHHHHHHHHhC---CCCCCCCcceeeEEEeccccCCC-CChHHHHH------HHHHH------HhcCCC
Q 002740 583 VKVFGDLHGQFGDLMRLFDEYG---FPSTAGDITYIDYLFLGDYVDRG-QHSLETIT------LLLAL------KIEYPE 646 (885)
Q Consensus 583 i~vvGDiHG~~~~L~~il~~~g---~~~~~~~~~~~~~vfLGDyvDRG-~~s~evl~------ll~~l------k~~~p~ 646 (885)
|+|+||+||+++.+.+.++... ..+.+ -+|++||+-..+ ...++.+. -+..+ ..+.|-
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D------~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~ 74 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVD------LLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPI 74 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCc------EEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCe
Confidence 6899999999998877554432 22223 688899997543 34444332 11211 233566
Q ss_pred cEEEeccCCccc
Q 002740 647 NVHLIRGNHEAA 658 (885)
Q Consensus 647 ~v~llrGNHE~~ 658 (885)
-+++|-||||..
T Consensus 75 ~t~fi~GNHE~~ 86 (262)
T cd00844 75 LTIFIGGNHEAS 86 (262)
T ss_pred eEEEECCCCCCH
Confidence 689999999974
No 112
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=96.83 E-value=0.0031 Score=68.25 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=48.0
Q ss_pred CeEEEecCC-C------------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-hHHHHHHHHHHHhcCCCc
Q 002740 582 PVKVFGDLH-G------------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-SLETITLLLALKIEYPEN 647 (885)
Q Consensus 582 ~i~vvGDiH-G------------~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~-s~evl~ll~~lk~~~p~~ 647 (885)
++.+++|+| + ....|.++++.+.....+ -+|++||+++.|.. +.+-+..++++-...+-.
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d------~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p 75 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLD------FVVQLGDIIDGDNARAEEALDAVLAILDRLKGP 75 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCC------EEEECCCeecCCCchHHHHHHHHHHHHHhcCCC
Confidence 588999999 2 245666777666432222 68899999998873 333444444433333457
Q ss_pred EEEeccCCcccch
Q 002740 648 VHLIRGNHEAADI 660 (885)
Q Consensus 648 v~llrGNHE~~~~ 660 (885)
++.+.||||....
T Consensus 76 ~~~v~GNHD~~~~ 88 (267)
T cd07396 76 VHHVLGNHDLYNP 88 (267)
T ss_pred EEEecCccccccc
Confidence 9999999998643
No 113
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=96.79 E-value=0.0026 Score=66.43 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=46.4
Q ss_pred CeEEEecCC-CCH--------------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcC--
Q 002740 582 PVKVFGDLH-GQF--------------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY-- 644 (885)
Q Consensus 582 ~i~vvGDiH-G~~--------------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~-- 644 (885)
+++.++|+| |.. ..|.++++.+.....+ .+|+.||++|....+.+.+..+..+-.+.
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~ 74 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVD------FVLIAGDLFDSNNPSPEALELLIEALRRLKE 74 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCC------EEEECCcccCCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999 322 2355555554332222 68999999998876555444333322122
Q ss_pred -CCcEEEeccCCcccch
Q 002740 645 -PENVHLIRGNHEAADI 660 (885)
Q Consensus 645 -p~~v~llrGNHE~~~~ 660 (885)
...++++.||||....
T Consensus 75 ~~~~v~~~~GNHD~~~~ 91 (223)
T cd00840 75 AGIPVFIIAGNHDSPSR 91 (223)
T ss_pred CCCCEEEecCCCCCccc
Confidence 4569999999997654
No 114
>PRK04036 DNA polymerase II small subunit; Validated
Probab=96.68 E-value=0.0068 Score=71.38 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=61.1
Q ss_pred cCCeEEEecCC-CCH----HHHHHHHHHhC-CCCCCC--CcceeeEEEeccccCC-CCCh---------------HHHHH
Q 002740 580 RAPVKVFGDLH-GQF----GDLMRLFDEYG-FPSTAG--DITYIDYLFLGDYVDR-GQHS---------------LETIT 635 (885)
Q Consensus 580 ~~~i~vvGDiH-G~~----~~L~~il~~~g-~~~~~~--~~~~~~~vfLGDyvDR-G~~s---------------~evl~ 635 (885)
...+++++||| |.- ..+.++++.+. ...... ...-..+|++||++|. |.++ .++..
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 35699999999 653 22344444332 211100 0001278999999994 3221 13444
Q ss_pred HHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHH-hCCCcchhhhhhhhhhccCCceEEEEe-CeEEEecCCC
Q 002740 636 LLLALKIEYPENVHLIRGNHEAADINALFGFRLECIER-MGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGI 710 (885)
Q Consensus 636 ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~-~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi 710 (885)
+|..+.. .-.|++++||||.........-..+++.. +.. .-..++.. |....++ .+++++||-.
T Consensus 323 ~L~~L~~--~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~--------~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQIPE--DIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPE--------HNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHhhhc--CCeEEEecCCCcchhhccCCCCccHHHHHhcCc--------CCeEEecC-CeEEEECCEEEEEECCCC
Confidence 5554432 24699999999976543222211222221 211 01223333 5544444 3789999964
No 115
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=96.62 E-value=0.0042 Score=62.52 Aligned_cols=44 Identities=25% Similarity=0.244 Sum_probs=27.7
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s--~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.+|++||++|..... .+...+-+......+..+++++||||...
T Consensus 44 ~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 44 RLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred EEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 799999999865432 22222211122234458999999999853
No 116
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.56 E-value=0.005 Score=64.17 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=22.0
Q ss_pred eCHHHHHHHHHHcCCeEEEEeccccccc
Q 002740 765 FGPDRVSDFCKRNKLQLIIRAHECVMDG 792 (885)
Q Consensus 765 fg~~~~~~fl~~~~l~~iiR~H~~~~~G 792 (885)
..+..+.+.++..+.+++|-||.-...-
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 203 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPAL 203 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCe
Confidence 3556677888899999999999866543
No 117
>PHA02546 47 endonuclease subunit; Provisional
Probab=96.54 E-value=0.0049 Score=69.07 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=45.8
Q ss_pred CeEEEecCC-C-----------CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHH----HHhcC
Q 002740 582 PVKVFGDLH-G-----------QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLA----LKIEY 644 (885)
Q Consensus 582 ~i~vvGDiH-G-----------~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG-~~s~evl~ll~~----lk~~~ 644 (885)
+++.++|+| | +...|.++++.+.-...+ .+|+.||++|+. +.+.+++.++.. +-...
T Consensus 2 KilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD------~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~ 75 (340)
T PHA02546 2 KILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGIT------TWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEA 75 (340)
T ss_pred eEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCC------EEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 578999999 4 224455555554322223 689999999985 455555544433 21223
Q ss_pred CCcEEEeccCCcccc
Q 002740 645 PENVHLIRGNHEAAD 659 (885)
Q Consensus 645 p~~v~llrGNHE~~~ 659 (885)
+-.+++|.||||...
T Consensus 76 gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 76 GITLHVLVGNHDMYY 90 (340)
T ss_pred CCeEEEEccCCCccc
Confidence 457999999999743
No 118
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=96.47 E-value=0.0086 Score=63.43 Aligned_cols=69 Identities=26% Similarity=0.305 Sum_probs=44.4
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCC--CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCc
Q 002740 582 PVKVFGDLHGQ------------FGDLMRLFDEYGFP--STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPEN 647 (885)
Q Consensus 582 ~i~vvGDiHG~------------~~~L~~il~~~g~~--~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~ 647 (885)
++.+++|||=. ...|.++++.+.-. ..+ -+|++||+++.|.. +....+.++..+.+..
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d------~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPD------LVLVTGDLTDDGSP--ESYERLRELLAALPIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCC------EEEECccCCCCCCH--HHHHHHHHHHhhcCCC
Confidence 47899999944 34567777665432 222 68999999998753 2222222222223457
Q ss_pred EEEeccCCccc
Q 002740 648 VHLIRGNHEAA 658 (885)
Q Consensus 648 v~llrGNHE~~ 658 (885)
++.++||||..
T Consensus 73 ~~~v~GNHD~~ 83 (240)
T cd07402 73 VYLLPGNHDDR 83 (240)
T ss_pred EEEeCCCCCCH
Confidence 99999999974
No 119
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.00026 Score=76.88 Aligned_cols=209 Identities=9% Similarity=-0.123 Sum_probs=140.7
Q ss_pred eeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCC
Q 002740 614 YIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCL 693 (885)
Q Consensus 614 ~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~L 693 (885)
+...|+++++++++-+.++.+.+.+..+..+-.+...++++|+. .++++++.+......+...+|+..++-+..+
T Consensus 48 ~latVdvdp~s~t~c~vI~r~~~~~~gdelhhsgwn~~ssc~~~-----~~~~R~~LVlp~l~S~riyvid~~~ep~~~~ 122 (476)
T KOG0918|consen 48 YLATVDVDPSSPTYCQVIHRLPMPYLGDELHHSGWNSCSSCHGD-----SSFKRRYLVLPSLNSGRIYVIDVKTEPRKPS 122 (476)
T ss_pred ceeEEecCCCCCcceeeEEEeccCcccchhcccchhhhhhhccC-----cchhhhheeecccccCceEEEEeccCcCccc
Confidence 34789999999999999999999999999988899999999943 5566777766666666778889999999999
Q ss_pred ceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCcccCCCCcchhccccCCCCCCCC--CCCcccCCCCCceEEeCHH--H
Q 002740 694 PLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITMDAGSIILMDLLWSDPTENDS--IEGLRPNARGPGLVTFGPD--R 769 (885)
Q Consensus 694 P~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~--~~~~~~n~rg~~~~~fg~~--~ 769 (885)
+...+.. +++|.||+..|+......+.++.-...-+.. ...+. |-++.+.+. ..-|. .++.. ..||-| .
T Consensus 123 l~k~i~~-~il~~~~l~~Pht~hcla~g~v~vs~lGd~~--gn~kg-~f~llD~~~~~k~tw~--~~~~~-p~~gyDfwy 195 (476)
T KOG0918|consen 123 LEKTIDP-DILEKTGLACPHTSHCLASGNVMVSCLGDAE--GNAKG-GFLLLDSDFNEKGTWE--KPGHS-PLFGYDFWY 195 (476)
T ss_pred eeeeech-hhHhhcCCcCCcccccccCCCeeEEeecccc--cCCcC-CeEEecCccceecccc--cCCCc-cccccceee
Confidence 9998877 8999999999997766555432111110111 11111 434333210 01111 11111 222222 2
Q ss_pred HHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcCc--ceEEeEEecC
Q 002740 770 VSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG--LVVVPKLIHP 836 (885)
Q Consensus 770 ~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~~--~~~~~~~~~~ 836 (885)
.-.+......+...+.|.....++..+.++ ++.++..-|.-...|.++.+.++.+ +.+..+.+|.
T Consensus 196 qpr~~~mIstewgap~~~~~gf~~~~v~d~--lyg~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~ 262 (476)
T KOG0918|consen 196 QPRHNVMISTEWGAPNALRKGFNPADVEDG--LYGSHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHN 262 (476)
T ss_pred ccccceEEeecccCchhhhcCCChhHhhcc--ceeeeeEEEecCCccceeEEecCCCCcceEEeeeccC
Confidence 334566667777888887655555566676 8899999998888899999999775 2334444543
No 120
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.41 E-value=2.3 Score=48.25 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=99.5
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yD~~t~~--W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
+.++.+|..+++ |+.-.. + -...+.+..++.+|+..+ ...++++|..+.+..|+.-.. .+....
T Consensus 115 g~l~ald~~tG~~~W~~~~~-~-----~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~-~~~~~~ 180 (377)
T TIGR03300 115 GEVIALDAEDGKELWRAKLS-S-----EVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRV-TPALTL 180 (377)
T ss_pred CEEEEEECCCCcEeeeeccC-c-----eeecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccC-CCceee
Confidence 568999997764 875321 1 112233445778887543 234999999887777876421 111111
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCC--CCCCCccc--cceEEEecCCEEEEEccCCCC
Q 002740 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE--GDRPSARM--YATASARSDGMFLLCGGRDAS 228 (885)
Q Consensus 153 R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~--g~~P~~r~--~hsa~~~~~~~l~v~GG~~~~ 228 (885)
+...+.++.+ +.+| +|..++ .++.+|+++....|+.-... +.....+. ..+...+.++.+|+...
T Consensus 181 ~~~~sp~~~~-~~v~-~~~~~g-----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~---- 249 (377)
T TIGR03300 181 RGSASPVIAD-GGVL-VGFAGG-----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY---- 249 (377)
T ss_pred cCCCCCEEEC-CEEE-EECCCC-----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----
Confidence 2223333444 3554 444332 58999998877788753221 10001111 11122345677777442
Q ss_pred CCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC--eEEE
Q 002740 229 GAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLD 302 (885)
Q Consensus 229 ~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~ 302 (885)
...++.++.. +|+-.|...... ..+.++.++++|+... ...++++|..+. .|..
T Consensus 250 ---~g~l~a~d~~-tG~~~W~~~~~~------~~~p~~~~~~vyv~~~----------~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 250 ---QGRVAALDLR-SGRVLWKRDASS------YQGPAVDDNRLYVTDA----------DGVVVALDRRSGSELWKN 305 (377)
T ss_pred ---CCEEEEEECC-CCcEEEeeccCC------ccCceEeCCEEEEECC----------CCeEEEEECCCCcEEEcc
Confidence 1347778775 444456543211 1234456888888742 245899998776 4764
No 121
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.40 E-value=1.5 Score=45.68 Aligned_cols=215 Identities=19% Similarity=0.301 Sum_probs=120.6
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccE--EEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCC
Q 002740 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHA--AAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (885)
Q Consensus 75 ~dv~~yD~~t~~--W~~l~~~~~~P~~R~~ha--~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p 150 (885)
+.+..+|+.+++ |+.-. + .+..+.. .+..++.+|+..+ ...++++|..+.+..|..-. +
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~---~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~-----~ 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--G---PGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL-----P 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--S---SSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC-----S
T ss_pred CEEEEEECCCCCEEEEEEC--C---CCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec-----c
Confidence 568899997765 88632 1 1122222 3336889999842 34599999988877898762 2
Q ss_pred CCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEE-EcCCCCCCCCccccceEEEecCCEEEEEccCCCCC
Q 002740 151 GPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQ-RLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (885)
Q Consensus 151 ~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~-~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~ 229 (885)
.+-... ....+ +.+|+.... +.++++|..+....|+ ...... +..........+.++.+|+...
T Consensus 66 ~~~~~~-~~~~~-~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 66 GPISGA-PVVDG-GRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSP--PAGVRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp SCGGSG-EEEET-TEEEEEETT------SEEEEEETTTSCEEEEEEE-SSC--TCSTB--SEEEEETTEEEEEET-----
T ss_pred ccccce-eeecc-cccccccce------eeeEecccCCcceeeeecccccc--ccccccccCceEecCEEEEEec-----
Confidence 221222 33444 477765521 2799999999888999 454321 1222223333444666766443
Q ss_pred CcccceEEEEcCCCCeeEEEeCCCCCCCc-------cceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe--E
Q 002740 230 APLADAYGLLMHRNGQWEWTLAPGVAPSP-------RYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--W 300 (885)
Q Consensus 230 ~~l~dv~~l~~~~~~~W~w~~~~~~~P~~-------R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~--W 300 (885)
-..++.++.. +|+-.|......++.. ......++.++.+|+..+. ..+..+|..+.+ |
T Consensus 131 --~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 131 --SGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD----------GRVVAVDLATGEKLW 197 (238)
T ss_dssp --CSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT----------SSEEEEETTTTEEEE
T ss_pred --cCcEEEEecC-CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC----------CeEEEEECCCCCEEE
Confidence 3457788765 4455555543332211 1123444446788887662 125666999987 8
Q ss_pred EEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCCCCCcEEEeeCCC
Q 002740 301 LDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDILLDDFLVAENSP 362 (885)
Q Consensus 301 ~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~ 362 (885)
+.. . .-........++.||+.. .+ ..++.+|..+
T Consensus 198 ~~~--~--------------------~~~~~~~~~~~~~l~~~~-~~-----~~l~~~d~~t 231 (238)
T PF13360_consen 198 SKP--I--------------------SGIYSLPSVDGGTLYVTS-SD-----GRLYALDLKT 231 (238)
T ss_dssp EEC--S--------------------S-ECECEECCCTEEEEEE-TT-----TEEEEEETTT
T ss_pred Eec--C--------------------CCccCCceeeCCEEEEEe-CC-----CEEEEEECCC
Confidence 433 2 111222444566777776 32 4577777665
No 122
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=96.37 E-value=0.095 Score=56.96 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=50.4
Q ss_pred CeEEEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHH--HhcCCCcEEEecc
Q 002740 582 PVKVFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLAL--KIEYPENVHLIRG 653 (885)
Q Consensus 582 ~i~vvGDiHG~------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~l--k~~~p~~v~llrG 653 (885)
.+..|+|+|-- ...+..+++.+.....+ -+|+.||++++|. ..| +..+.++ +...|..+++++|
T Consensus 2 ~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D------~~v~tGDl~~~~~-~~~-~~~~~~~l~~~~~~~~~~~vpG 73 (301)
T COG1409 2 RIAHISDLHLGALGVDSEELLEALLAAIEQLKPD------LLVVTGDLTNDGE-PEE-YRRLKELLARLELPAPVIVVPG 73 (301)
T ss_pred eEEEEecCcccccccchHHHHHHHHHHHhcCCCC------EEEEccCcCCCCC-HHH-HHHHHHHHhhccCCCceEeeCC
Confidence 47889999977 34556666777644444 7999999999963 222 2223222 2367788999999
Q ss_pred CCcccchhh
Q 002740 654 NHEAADINA 662 (885)
Q Consensus 654 NHE~~~~~~ 662 (885)
|||....+.
T Consensus 74 NHD~~~~~~ 82 (301)
T COG1409 74 NHDARVVNG 82 (301)
T ss_pred CCcCCchHH
Confidence 999987653
No 123
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.31 E-value=0.0081 Score=64.40 Aligned_cols=72 Identities=22% Similarity=0.229 Sum_probs=46.5
Q ss_pred CeEEEecCCC-C-----------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHHhcCC
Q 002740 582 PVKVFGDLHG-Q-----------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 645 (885)
Q Consensus 582 ~i~vvGDiHG-~-----------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl----~ll~~lk~~~p 645 (885)
+++.++|+|- . ...|.++++.+.-...+ .+|+.||++|+...+.+.. .+|..|+...|
T Consensus 2 kilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D------~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~ 75 (253)
T TIGR00619 2 RILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQID------ALLVAGDVFDTANPPAEAQELFNAFFRNLSDANP 75 (253)
T ss_pred EEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 5789999993 2 23444555544322222 6899999999987665543 34444544333
Q ss_pred CcEEEeccCCcccc
Q 002740 646 ENVHLIRGNHEAAD 659 (885)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (885)
-.++++.||||...
T Consensus 76 i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 76 IPIVVISGNHDSAQ 89 (253)
T ss_pred ceEEEEccCCCChh
Confidence 57999999999853
No 124
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.19 E-value=0.015 Score=61.12 Aligned_cols=69 Identities=22% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCeEEEecCC-CCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh---HHHHHHHHHH
Q 002740 581 APVKVFGDLH-GQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS---LETITLLLAL 640 (885)
Q Consensus 581 ~~i~vvGDiH-G~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s---~evl~ll~~l 640 (885)
+.+.||+|+| |--.. |.++.+.......+ .+|++||+++..... -++..++..+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d------~vIi~GDl~h~~~~~~~~~~~~~~l~~~ 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIE------ALIINGDLKHEFKKGLEWRFIREFIEVT 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCC------EEEEcCccccccCChHHHHHHHHHHHhc
Confidence 6689999999 53222 22233322222222 799999999755543 2222333332
Q ss_pred HhcCCCcEEEeccCCcccc
Q 002740 641 KIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 641 k~~~p~~v~llrGNHE~~~ 659 (885)
...+++++||||...
T Consensus 89 ----~~~v~~V~GNHD~~~ 103 (225)
T TIGR00024 89 ----FRDLILIRGNHDALI 103 (225)
T ss_pred ----CCcEEEECCCCCCcc
Confidence 247999999999754
No 125
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=96.12 E-value=0.0083 Score=59.35 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=28.1
Q ss_pred eEEEeccccCCCCCh-HHHH-HHHHHHHhc---C-CCcEEEeccCCcccc
Q 002740 616 DYLFLGDYVDRGQHS-LETI-TLLLALKIE---Y-PENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s-~evl-~ll~~lk~~---~-p~~v~llrGNHE~~~ 659 (885)
.+|++||++|.+... .+.. .++..++.. . +..++++.||||...
T Consensus 41 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 41 VVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred EEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 799999999987642 1222 223333222 2 346999999999753
No 126
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=96.12 E-value=0.018 Score=61.41 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=26.6
Q ss_pred eEEEeccccCCCC-----C-------hHH----HHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 616 DYLFLGDYVDRGQ-----H-------SLE----TITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyvDRG~-----~-------s~e----vl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.+|++||++|+.. . ..+ +..+|.+|. ..-.|+++.||||...
T Consensus 38 ~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~--~~~~v~~ipGNHD~~~ 95 (243)
T cd07386 38 YLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP--SHIKIIIIPGNHDAVR 95 (243)
T ss_pred EEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc--cCCeEEEeCCCCCccc
Confidence 7899999999731 0 111 223333333 2357999999999854
No 127
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.11 E-value=2.2 Score=44.56 Aligned_cols=183 Identities=20% Similarity=0.219 Sum_probs=104.0
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCC
Q 002740 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yD~~t~~--W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~ 151 (885)
.+.++++|..+++ |+.-... +.....+..++.+|+..+. +.++++|..+.+..|.......+...
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred CCEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce-------eeeEecccCCcceeeeeccccccccc
Confidence 4789999998775 7765411 1222257778899887632 26999999888788994322111111
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCc--c--ccceEEEecCCEEEEEccCCC
Q 002740 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA--R--MYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 152 ~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~--r--~~hsa~~~~~~~l~v~GG~~~ 227 (885)
.+......+.+ +.+|+... -..++++|+++....|+.-........+ . ...+..++.++.+|+..+..
T Consensus 112 ~~~~~~~~~~~-~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g- 183 (238)
T PF13360_consen 112 VRSSSSPAVDG-DRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG- 183 (238)
T ss_dssp TB--SEEEEET-TEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-
T ss_pred cccccCceEec-CEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-
Confidence 23334444444 46665443 2468999999887788886532110010 0 01133344567888866532
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe
Q 002740 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 228 ~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
.+..++.. +++-.|...... ........++.+|+.. . ...++++|..+++
T Consensus 184 ------~~~~~d~~-tg~~~w~~~~~~-----~~~~~~~~~~~l~~~~-~---------~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 184 ------RVVAVDLA-TGEKLWSKPISG-----IYSLPSVDGGTLYVTS-S---------DGRLYALDLKTGK 233 (238)
T ss_dssp ------SEEEEETT-TTEEEEEECSS------ECECEECCCTEEEEEE-T---------TTEEEEEETTTTE
T ss_pred ------eEEEEECC-CCCEEEEecCCC-----ccCCceeeCCEEEEEe-C---------CCEEEEEECCCCC
Confidence 15677554 445446333111 1122445577888775 2 2459999999874
No 128
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=96.08 E-value=0.016 Score=62.96 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=45.8
Q ss_pred CCeEEEecCC-C-----------CHHHHHHHHHHhCC-C-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCC
Q 002740 581 APVKVFGDLH-G-----------QFGDLMRLFDEYGF-P-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPE 646 (885)
Q Consensus 581 ~~i~vvGDiH-G-----------~~~~L~~il~~~g~-~-~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~ 646 (885)
-+++.++|+| . ....|.++++.+.. . ..+ -+|+.||++|.|. .+-+..+++.-.+.+.
T Consensus 15 ~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D------~vvitGDl~~~~~--~~~~~~~~~~l~~l~~ 86 (275)
T PRK11148 15 VRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFD------LIVATGDLAQDHS--SEAYQHFAEGIAPLRK 86 (275)
T ss_pred EEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCC------EEEECCCCCCCCC--HHHHHHHHHHHhhcCC
Confidence 3589999999 1 24567777776532 1 122 6889999999874 3333333333233456
Q ss_pred cEEEeccCCccc
Q 002740 647 NVHLIRGNHEAA 658 (885)
Q Consensus 647 ~v~llrGNHE~~ 658 (885)
.++.+.||||..
T Consensus 87 Pv~~v~GNHD~~ 98 (275)
T PRK11148 87 PCVWLPGNHDFQ 98 (275)
T ss_pred cEEEeCCCCCCh
Confidence 799999999973
No 129
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=96.04 E-value=0.012 Score=67.33 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=44.1
Q ss_pred CeEEEecCC-CC-H------HH----HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHH----HHHHHHHhcCC
Q 002740 582 PVKVFGDLH-GQ-F------GD----LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETI----TLLLALKIEYP 645 (885)
Q Consensus 582 ~i~vvGDiH-G~-~------~~----L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl----~ll~~lk~~~p 645 (885)
+++.++|+| |. + .+ |.++.+.+.-...+ .+|+.||++|++..+.+.. .++..|+. .+
T Consensus 2 kilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D------~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~ 74 (407)
T PRK10966 2 RILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVD------AIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TG 74 (407)
T ss_pred EEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCC------EEEECCccccCCCCcHHHHHHHHHHHHHHHh-cC
Confidence 578999999 42 1 11 23344433222223 6889999999987655433 33444543 23
Q ss_pred CcEEEeccCCcccc
Q 002740 646 ENVHLIRGNHEAAD 659 (885)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (885)
-.++++.||||...
T Consensus 75 ~~v~~I~GNHD~~~ 88 (407)
T PRK10966 75 CQLVVLAGNHDSVA 88 (407)
T ss_pred CcEEEEcCCCCChh
Confidence 56999999999754
No 130
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=96.00 E-value=0.035 Score=60.80 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEE
Q 002740 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLI 802 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~i 802 (885)
....+.+.++++++++++-||.-.-.-+....+++++
T Consensus 181 ~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~ 217 (294)
T cd00839 181 MRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV 217 (294)
T ss_pred HHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec
Confidence 3467788899999999999998653333333455543
No 131
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=95.88 E-value=0.02 Score=60.60 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceE---EecCCeEEEEeecccccCC
Q 002740 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFE---RFAQGQLITLFSATNYCGT 813 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~---~~~~~~~itvfSa~~y~~~ 813 (885)
+...+.+.+++.++++++-||.-...-.. ...+| |+.+++|.=|-+
T Consensus 181 ~~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~~~g--i~~~~~~~~~~~ 229 (232)
T cd07393 181 DDSPISKLIEEYGVDICVYGHLHGVGRDRAINGERGG--IRYQLVSADYLN 229 (232)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcccccccceECC--EEEEEEcchhcC
Confidence 45677888899999999999975433222 12333 566666655543
No 132
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=95.88 E-value=0.025 Score=58.28 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.8
Q ss_pred eEEEeccccCCCCC---hHHHHHHHHHHHhcCCCcEEEeccCCc
Q 002740 616 DYLFLGDYVDRGQH---SLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 616 ~~vfLGDyvDRG~~---s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.+|++||+++.+.. +.+.+..+++......-.++++.||||
T Consensus 44 ~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 87 (199)
T cd07383 44 LVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAATFGNHD 87 (199)
T ss_pred EEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEECccCC
Confidence 68999999997765 355555555443334457899999999
No 133
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.86 E-value=2.9 Score=47.40 Aligned_cols=180 Identities=21% Similarity=0.194 Sum_probs=95.1
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecC--CCC
Q 002740 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG--QGP 150 (885)
Q Consensus 75 ~dv~~yD~~t~~--W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~--~~p 150 (885)
+.++.+|+.+++ |+.-... .....+...+.++.++.+|+ |.. ...++.+|+.+.+..|..-...+ ...
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~~-~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVLV-GFA------GGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CeEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEEE-ECC------CCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 558999998764 8753211 11011223344556776654 332 12489999988777786531111 000
Q ss_pred CCc---cccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCC
Q 002740 151 GPR---YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 151 ~~R---~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~ 227 (885)
..| ...+. .+.++.+|+.+. + ..+++||+++....|..-... .+..+..++.+|+...
T Consensus 227 ~~~~~~~~~~p-~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~~~---------~~~p~~~~~~vyv~~~--- 287 (377)
T TIGR03300 227 LERLVDVDGDP-VVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDASS---------YQGPAVDDNRLYVTDA--- 287 (377)
T ss_pred hhhhhccCCcc-EEECCEEEEEEc-C-----CEEEEEECCCCcEEEeeccCC---------ccCceEeCCEEEEECC---
Confidence 011 11222 233457776432 2 359999999887789764211 1222345778887542
Q ss_pred CCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe
Q 002740 228 SGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 228 ~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
-..++.++.. +|+-.|.... . ..+...+.+..++++|+... ...++++|..+.+
T Consensus 288 ----~G~l~~~d~~-tG~~~W~~~~-~--~~~~~ssp~i~g~~l~~~~~----------~G~l~~~d~~tG~ 341 (377)
T TIGR03300 288 ----DGVVVALDRR-SGSELWKNDE-L--KYRQLTAPAVVGGYLVVGDF----------EGYLHWLSREDGS 341 (377)
T ss_pred ----CCeEEEEECC-CCcEEEcccc-c--cCCccccCEEECCEEEEEeC----------CCEEEEEECCCCC
Confidence 2347777765 3343454321 0 11222334556788877521 2348889987764
No 134
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=95.62 E-value=0.031 Score=63.69 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=53.5
Q ss_pred CeEEEecCCCC------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhc------
Q 002740 582 PVKVFGDLHGQ------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIE------ 643 (885)
Q Consensus 582 ~i~vvGDiHG~------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~------ 643 (885)
+|.+++|+|-- +..|.++++.+.-...+ -+|+.||++|+..-|.+++..++.+-.+
T Consensus 5 KIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD------~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~ 78 (405)
T TIGR00583 5 RILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVD------MILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDK 78 (405)
T ss_pred EEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCC------EEEECCccCCCCCCCHHHHHHHHHHHHHhhccCC
Confidence 58999999942 45777787777543333 6888999999999999888665554322
Q ss_pred ------------------------------CCCcEEEeccCCcccc
Q 002740 644 ------------------------------YPENVHLIRGNHEAAD 659 (885)
Q Consensus 644 ------------------------------~p~~v~llrGNHE~~~ 659 (885)
..-.||.|-||||...
T Consensus 79 p~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 79 PCELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred ccchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1337999999999865
No 135
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=95.59 E-value=0.31 Score=52.37 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=26.5
Q ss_pred cccCCCCCc--eE-EeCHHHHHHHHHHcCCeEEEEeccc
Q 002740 753 LRPNARGPG--LV-TFGPDRVSDFCKRNKLQLIIRAHEC 788 (885)
Q Consensus 753 ~~~n~rg~~--~~-~fg~~~~~~fl~~~~l~~iiR~H~~ 788 (885)
+.+.+++.| .- .-.++..++.|+..+-.+|.-||+-
T Consensus 188 ~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH 226 (257)
T cd08163 188 KTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDH 226 (257)
T ss_pred CCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCC
Confidence 344444544 11 3588999999999999999999973
No 136
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.43 E-value=7.7 Score=45.82 Aligned_cols=203 Identities=18% Similarity=0.211 Sum_probs=101.1
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccC--------------ccEEEEE---CCEEEEEcCcCC-----------CCC
Q 002740 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRA--------------AHAAAAV---GTMVVFQGGIGP-----------AGH 123 (885)
Q Consensus 74 ~~dv~~yD~~t~~--W~~l~~~~~~P~~R~--------------~ha~~~~---~~~iyv~GG~~~-----------~~~ 123 (885)
...++.||..+++ |+.-.....+-..+. -++..++ ++.||+..|.+. ...
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~ 253 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNL 253 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCC
Confidence 5789999998764 875332111100010 0112233 467887655321 123
Q ss_pred ccccEEEEEecCCccEEEEEeecCCCCCCccccEEEE-----ECCc--EEEEEecCCCCcccCcEEEEeCCCCCeeEEEc
Q 002740 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL-----VSQR--YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (885)
Q Consensus 124 ~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~-----~~~~--~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l 196 (885)
..+.++.+|..+.+..|+.-....+...-+......+ +++. .++++|..++ .++.+|.++....|+.-
T Consensus 254 ~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G-----~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 254 YTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNG-----FFYVLDRTTGKLISARP 328 (488)
T ss_pred ceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCc-----eEEEEECCCCcEeeEeE
Confidence 4467999999998888986421111100011111111 1221 2444555443 59999999998889864
Q ss_pred CCCCCCCCccccceEEEecCCEEEEEccCCCC-----------CCcccceEEEEcCCCCeeEEEeCCCCCC------Ccc
Q 002740 197 NPEGDRPSARMYATASARSDGMFLLCGGRDAS-----------GAPLADAYGLLMHRNGQWEWTLAPGVAP------SPR 259 (885)
Q Consensus 197 ~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~-----------~~~l~dv~~l~~~~~~~W~w~~~~~~~P------~~R 259 (885)
.... .. ....+.+|+....... ......++.++.. +|+-.|....+... .+.
T Consensus 329 ~~~~---------~~-~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~-tG~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 329 EVEQ---------PM-AYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK-TGKVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred eecc---------cc-ccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCC-CCcEeeEeeCCccccccccCCcc
Confidence 3210 00 1122556663211100 0123346777765 45666766543110 122
Q ss_pred ceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe--EEE
Q 002740 260 YQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV--WLD 302 (885)
Q Consensus 260 ~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~--W~~ 302 (885)
.....+..++.+|+- .. ...+++||..+.+ |+.
T Consensus 398 ~~~~~~~~g~~v~~g-~~---------dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 398 WGGSLATAGNLVFAG-AA---------DGYFRAFDATTGKELWKF 432 (488)
T ss_pred cCcceEecCCeEEEE-CC---------CCeEEEEECCCCceeeEE
Confidence 233445556665554 32 1348999998874 763
No 137
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.23 E-value=0.04 Score=59.19 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=21.8
Q ss_pred HHHHHHHcCCeEEEEeccccccceEEe
Q 002740 770 VSDFCKRNKLQLIIRAHECVMDGFERF 796 (885)
Q Consensus 770 ~~~fl~~~~l~~iiR~H~~~~~G~~~~ 796 (885)
+.+.+++.++++++-||.-...+.+..
T Consensus 190 ~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 190 FKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHhcCCcEEEeCCccCCCcceee
Confidence 778889999999999998776664543
No 138
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=94.93 E-value=2.6 Score=43.61 Aligned_cols=205 Identities=18% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEecccc--CCCCChHHHHHH-HHHHHhcCCCcEEEeccCCcc
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYV--DRGQHSLETITL-LLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyv--DRG~~s~evl~l-l~~lk~~~p~~v~llrGNHE~ 657 (885)
.++..+.|+||.++.|.++++.......+ -+++.||+. ++|+.-.-.... +.+++ .+-..++.+.||-|.
T Consensus 4 mkil~vtDlHg~~~~~~k~~~~~~~~~~D------~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~ 76 (226)
T COG2129 4 MKILAVTDLHGSEDSLKKLLNAAADIRAD------LLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDP 76 (226)
T ss_pred ceEEEEeccccchHHHHHHHHHHhhccCC------EEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCCh
Confidence 46899999999999999999887754443 678899999 877643222211 33443 234689999999887
Q ss_pred cchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCCCC------cCHHHhhcccCCcccCC
Q 002740 658 ADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSI------HSVEQIEKLERPITMDA 731 (885)
Q Consensus 658 ~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~------~~~~~i~~~~rp~~~~~ 731 (885)
..+-.. ....+. .+.. -.-.+++--||-=||..|.- .+-++|...-+-.....
T Consensus 77 ~~v~~~-------l~~~~~----~v~~----------~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~ 135 (226)
T COG2129 77 PEVIDV-------LKNAGV----NVHG----------RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKA 135 (226)
T ss_pred HHHHHH-------HHhccc----cccc----------ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcc
Confidence 654221 111111 1111 11233444455557776642 13455544322211111
Q ss_pred CCcchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeeccccc
Q 002740 732 GSIILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYC 811 (885)
Q Consensus 732 ~~~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y~ 811 (885)
....-.=++-+-|-.. ... ++-| ...-|..++.+++++.+-.+.|.||=--..|++.- | =||+-.|.-.
T Consensus 136 ~~~~~Il~~HaPP~gt-~~d----~~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~i--G--~TivVNPG~~ 204 (226)
T COG2129 136 DNPVNILLTHAPPYGT-LLD----TPSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKI--G--NTIVVNPGPL 204 (226)
T ss_pred cCcceEEEecCCCCCc-ccc----CCCC--ccccchHHHHHHHHHhCCceEEEeeeccccccccc--C--CeEEECCCCc
Confidence 0100001123334321 111 2333 22458999999999999999999985555676642 1 2666666543
Q ss_pred CCCCCeEEEEEEcCc
Q 002740 812 GTANNAGAILVVGRG 826 (885)
Q Consensus 812 ~~~~n~ga~l~~~~~ 826 (885)
+ .-..|++.++++
T Consensus 205 ~--~g~yA~i~l~~~ 217 (226)
T COG2129 205 G--EGRYALIELEKE 217 (226)
T ss_pred c--CceEEEEEecCc
Confidence 2 235688888777
No 139
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=0.11 Score=54.14 Aligned_cols=196 Identities=22% Similarity=0.264 Sum_probs=101.9
Q ss_pred EEecCCCC------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccC--CCCC-----hHHHHHHHHHHHhcCCCcEEEe
Q 002740 585 VFGDLHGQ------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVD--RGQH-----SLETITLLLALKIEYPENVHLI 651 (885)
Q Consensus 585 vvGDiHG~------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvD--RG~~-----s~evl~ll~~lk~~~p~~v~ll 651 (885)
.|+|+|=. -+.|+++++...- .++ .+.+|||++| +|.. --+|...|..+. .-..+++.+
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad------~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i 73 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAA-QAD------ALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYI 73 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccc-cCc------EEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEe
Confidence 57888844 3445566655332 223 7889999997 3332 234444444443 345789999
Q ss_pred ccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEE---eCeEEEecCCCCCCCc------------C
Q 002740 652 RGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI---EKKIICMHGGIGRSIH------------S 716 (885)
Q Consensus 652 rGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i---~~~il~vHgGi~~~~~------------~ 716 (885)
.||||. .+...+ ....+ .+.-+|-..++ +.+++++||-.-.... -
T Consensus 74 ~GN~Df-ll~~~f------~~~~g-------------~~~l~~~~~~~~l~g~~~Ll~HGD~f~t~~~~y~~~r~~~~~~ 133 (237)
T COG2908 74 HGNHDF-LLGKRF------AQEAG-------------GMTLLPDPIVLDLYGKRILLAHGDTFCTDDRAYQWFRYKVHWA 133 (237)
T ss_pred cCchHH-HHHHHH------HhhcC-------------ceEEcCcceeeeecCcEEEEEeCCcccchHHHHHHHHHHcccH
Confidence 999994 333222 11111 12233444333 5799999997643210 0
Q ss_pred HHHhhcccCCcccCCCCcchhccccCCCCCCCCCCCcccCCCCCc--eEEeCHHHHHHHHHHcCCeEEEEeccccccceE
Q 002740 717 VEQIEKLERPITMDAGSIILMDLLWSDPTENDSIEGLRPNARGPG--LVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFE 794 (885)
Q Consensus 717 ~~~i~~~~rp~~~~~~~~~~~dllWsdP~~~~~~~~~~~n~rg~~--~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~ 794 (885)
..+..-+.+|+..- ..+..=+|+.- .|.+...... ..-..+.++.+-+++++++.+|-||.-.+..-.
T Consensus 134 ~~~~lflnl~l~~R---~ri~~k~r~~s-------~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~ 203 (237)
T COG2908 134 WLQLLFLNLPLRVR---RRIAYKIRSLS-------SWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIHN 203 (237)
T ss_pred HHHHHHHHhHHHHH---HHHHHHHHHhh-------HHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhcc
Confidence 11111112222100 01111244443 1111111111 122467788889999999999999987655443
Q ss_pred EecCCeEEEEeeccccc--CCCCCeEEEEEEcCcce
Q 002740 795 RFAQGQLITLFSATNYC--GTANNAGAILVVGRGLV 828 (885)
Q Consensus 795 ~~~~~~~itvfSa~~y~--~~~~n~ga~l~~~~~~~ 828 (885)
. ++ ..|| |.-...++++.++.+..
T Consensus 204 i--~~--------~~yi~lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 204 I--PG--------ITYINLGDWVSEGSILEVDDGGL 229 (237)
T ss_pred C--CC--------ceEEecCcchhcceEEEEecCcE
Confidence 2 11 2232 22235678888877653
No 140
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.84 E-value=0.59 Score=52.48 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=74.4
Q ss_pred ECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCc------ccc
Q 002740 161 VSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP------LAD 234 (885)
Q Consensus 161 ~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~------l~d 234 (885)
+.+.+|+..+.. ....+||+++. .-. ....++.+...-.++.+ +++||++......... .-+
T Consensus 74 l~gskIv~~d~~------~~t~vyDt~t~--av~---~~P~l~~pk~~pisv~V-G~~LY~m~~~~~~~~~~~~~~~~FE 141 (342)
T PF07893_consen 74 LHGSKIVAVDQS------GRTLVYDTDTR--AVA---TGPRLHSPKRCPISVSV-GDKLYAMDRSPFPEPAGRPDFPCFE 141 (342)
T ss_pred ecCCeEEEEcCC------CCeEEEECCCC--eEe---ccCCCCCCCcceEEEEe-CCeEEEeeccCccccccCccceeEE
Confidence 344577766544 34899999987 222 22223444445444444 5559998876433221 222
Q ss_pred eEEEE-----cCCCCeeEEEeCCCCCCCccc-------eeEEEEE-CCEEEE-EcccCCCCCCccCCCcEEEEECCCCeE
Q 002740 235 AYGLL-----MHRNGQWEWTLAPGVAPSPRY-------QHAAVFV-GARLHV-TGGALRGGRAIEGEAAVAVLDTAAGVW 300 (885)
Q Consensus 235 v~~l~-----~~~~~~W~w~~~~~~~P~~R~-------~hs~~~~-~~~i~V-~GG~~~~~~~~~~~~~v~~yD~~t~~W 300 (885)
+..|. ......|.|..++.+ |-.+. -.+-+++ |.+|+| .-|.. ...+.||+++.+|
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---------~GTysfDt~~~~W 211 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---------WGTYSFDTESHEW 211 (342)
T ss_pred EeccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEecCCeEEEEecCCc---------eEEEEEEcCCcce
Confidence 33333 135679999998764 43332 2344555 678888 43321 2489999999999
Q ss_pred EEccCC
Q 002740 301 LDRNGL 306 (885)
Q Consensus 301 ~~v~~~ 306 (885)
+++..-
T Consensus 212 ~~~GdW 217 (342)
T PF07893_consen 212 RKHGDW 217 (342)
T ss_pred eeccce
Confidence 999764
No 141
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=94.48 E-value=0.078 Score=53.27 Aligned_cols=44 Identities=30% Similarity=0.360 Sum_probs=28.8
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHHhcC--------CCcEEEeccCCcccc
Q 002740 616 DYLFLGDYVDRGQHS--LETITLLLALKIEY--------PENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s--~evl~ll~~lk~~~--------p~~v~llrGNHE~~~ 659 (885)
.+||+||++|.+... .+...++..++..+ ...++++.||||...
T Consensus 48 ~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 48 VVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred EEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 799999999988743 23222332222211 356999999999864
No 142
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.17 E-value=2.1 Score=46.43 Aligned_cols=126 Identities=15% Similarity=0.223 Sum_probs=75.9
Q ss_pred EEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccccE
Q 002740 50 LFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDL 128 (885)
Q Consensus 50 lfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl 128 (885)
++||.....+.. .-..+..||..+.+|..+...- .. .=+++..+ ++.||+.|-....+.....+
T Consensus 2 ~VGG~F~~aGsL-----------~C~~lC~yd~~~~qW~~~g~~i---~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~l 66 (281)
T PF12768_consen 2 YVGGSFTSAGSL-----------PCPGLCLYDTDNSQWSSPGNGI---SG-TVTDLQWASNNQLLVGGNFTLNGTNSSNL 66 (281)
T ss_pred EEeeecCCCCCc-----------CCCEEEEEECCCCEeecCCCCc---eE-EEEEEEEecCCEEEEEEeeEECCCCceeE
Confidence 567766555411 2467889999999999765320 11 11233333 67888887654333345668
Q ss_pred EEEEecCCccEEEEEeec--CCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCC
Q 002740 129 YVLDLTNDKFKWHRVVVQ--GQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNP 198 (885)
Q Consensus 129 ~~~D~~~~~~~W~~l~~~--~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~ 198 (885)
-.||..+. +|..+... ...|.+....+....+...+++.|.. ..-..-+..||- . +|..+..
T Consensus 67 a~yd~~~~--~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~dG--s--~W~~i~~ 130 (281)
T PF12768_consen 67 ATYDFKNQ--TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKYDG--S--SWSSIGS 130 (281)
T ss_pred EEEecCCC--eeeecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEEcC--C--ceEeccc
Confidence 89999985 49888542 24566654444433355578877764 222334666754 3 6999976
No 143
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=94.01 E-value=0.061 Score=54.88 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=32.5
Q ss_pred eEEEeccccCCCCCh--HHHHHHHHHHHhcCC----CcEEEeccCCccc
Q 002740 616 DYLFLGDYVDRGQHS--LETITLLLALKIEYP----ENVHLIRGNHEAA 658 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s--~evl~ll~~lk~~~p----~~v~llrGNHE~~ 658 (885)
-++||||++|.|+.. .|....+..++..|+ -.++.|.||||.-
T Consensus 45 ~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 45 IVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred EEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 689999999999853 346676666654433 4688999999974
No 144
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=93.89 E-value=0.14 Score=50.26 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=47.9
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCc
Q 002740 584 KVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 584 ~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.|+||+||+++.+..-++.+.-. .+ ...-+|++||+..-....-+ +.-++.=+.+.|--.+++-||||
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k--~g--pFd~~ic~Gdff~~~~~~~~-~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKK--KG--PFDALLCVGDFFGDDEDDEE-LEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcc--cC--CeeEEEEecCccCCccchhh-HHHHhcCCccCCCCEEEECCCCC
Confidence 48999999999998877765321 11 12268889999976555533 33333445567888999999998
No 145
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=93.87 E-value=0.13 Score=55.87 Aligned_cols=71 Identities=24% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCeEEEecCCCCHHH--HHHHHHHhCCCCCCCCcceeeEEEeccccCC-CCCh-HHHHHHHHHHHhcCCCcEEEeccCCc
Q 002740 581 APVKVFGDLHGQFGD--LMRLFDEYGFPSTAGDITYIDYLFLGDYVDR-GQHS-LETITLLLALKIEYPENVHLIRGNHE 656 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~--L~~il~~~g~~~~~~~~~~~~~vfLGDyvDR-G~~s-~evl~ll~~lk~~~p~~v~llrGNHE 656 (885)
.+|+-+.|+|=.... ..+.+........+ -+++.|||+|+ .+.. -.++..|..|+. |-.+|.+.||||
T Consensus 45 ~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~D------livltGD~~~~~~~~~~~~~~~~L~~L~~--~~gv~av~GNHd 116 (284)
T COG1408 45 LKIVQLSDLHSLPFREEKLALLIAIANELPD------LIVLTGDYVDGDRPPGVAALALFLAKLKA--PLGVFAVLGNHD 116 (284)
T ss_pred eEEEEeehhhhchhhHHHHHHHHHHHhcCCC------EEEEEeeeecCCCCCCHHHHHHHHHhhhc--cCCEEEEecccc
Confidence 359999999977655 22223222222223 68999999995 5444 445566666654 457999999998
Q ss_pred ccc
Q 002740 657 AAD 659 (885)
Q Consensus 657 ~~~ 659 (885)
...
T Consensus 117 ~~~ 119 (284)
T COG1408 117 YGV 119 (284)
T ss_pred ccc
Confidence 654
No 146
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=93.69 E-value=0.24 Score=51.70 Aligned_cols=71 Identities=24% Similarity=0.317 Sum_probs=43.7
Q ss_pred cCCeEEEecCCCCHHHHH----------------HHHHHh--CCCCCCCCcceeeEEEeccccCCCC-----ChHHHHHH
Q 002740 580 RAPVKVFGDLHGQFGDLM----------------RLFDEY--GFPSTAGDITYIDYLFLGDYVDRGQ-----HSLETITL 636 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L~----------------~il~~~--g~~~~~~~~~~~~~vfLGDyvDRG~-----~s~evl~l 636 (885)
...+.|+.|+|=-|+..+ +.++.+ .+.++ ++|+|||.-.-.+ ...|+-.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~-------~lIilGD~KH~~~~~~~~e~~~~~~f 91 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPK-------RLIILGDLKHEFGKSLRQEKEEVREF 91 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCC-------EEEEcCccccccCccccccHHHHHHH
Confidence 468999999996554333 223211 11121 7999999985332 23444444
Q ss_pred HHHHHhcCCCcEEEeccCCcccch
Q 002740 637 LLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 637 l~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
+-.++.. .++++|||||...-
T Consensus 92 ~~~~~~~---evi~i~GNHD~~i~ 112 (235)
T COG1407 92 LELLDER---EVIIIRGNHDNGIE 112 (235)
T ss_pred HHHhccC---cEEEEeccCCCccc
Confidence 4444432 59999999998543
No 147
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=93.04 E-value=0.17 Score=54.07 Aligned_cols=66 Identities=32% Similarity=0.334 Sum_probs=41.7
Q ss_pred CeEEEecCCCCH---------HHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----HHHHHHHHHHhcCCCc
Q 002740 582 PVKVFGDLHGQF---------GDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-----ETITLLLALKIEYPEN 647 (885)
Q Consensus 582 ~i~vvGDiHG~~---------~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~-----evl~ll~~lk~~~p~~ 647 (885)
.|+.++|+||.+ ..|.++++...-...+ .-+|..||+++....+. .++..|.++ .-
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~-----~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~-----g~ 71 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENEN-----TLLLDAGDNFDGSPPSTATKGEANIELMNAL-----GY 71 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCC-----eEEEeCCccCCCccchhccCCcHHHHHHHhc-----CC
Confidence 478999999887 4556666665432111 14677999999887643 444444443 22
Q ss_pred EEEeccCCcc
Q 002740 648 VHLIRGNHEA 657 (885)
Q Consensus 648 v~llrGNHE~ 657 (885)
-++..||||.
T Consensus 72 d~~~~GNHe~ 81 (252)
T cd00845 72 DAVTIGNHEF 81 (252)
T ss_pred CEEeeccccc
Confidence 3345599996
No 148
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.92 E-value=24 Score=41.64 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=64.7
Q ss_pred CcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCC--CCccccEEEEEecCCccEEEEEeecCCCC
Q 002740 75 NSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPA--GHSTDDLYVLDLTNDKFKWHRVVVQGQGP 150 (885)
Q Consensus 75 ~dv~~yD~~t~~--W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~--~~~~~dl~~~D~~~~~~~W~~l~~~~~~p 150 (885)
+.++.+|..+++ |+.-......+......+.++.++.+|+....... ......+++||..+.+..|..-.....+.
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~ 199 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPN 199 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcC
Confidence 678999998764 88533111000101223345556776663221110 01345799999998877897643211111
Q ss_pred CCc---------------cccEEEEE-CCcEEEEEecCCC------------CcccCcEEEEeCCCCCeeEEEcC
Q 002740 151 GPR---------------YGHVMDLV-SQRYLVSVSGNDG------------KRVLSDAWALDTAQKPYVWQRLN 197 (885)
Q Consensus 151 ~~R---------------~~h~~~~~-~~~~lyv~GG~~~------------~~~~ndv~~~d~~t~~~~W~~l~ 197 (885)
..+ .-.+.++. .++.+|+-.+... ....+.++.+|.++....|+.-.
T Consensus 200 ~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 200 AFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 111 11122222 3446665444321 12335799999999988998754
No 149
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=92.77 E-value=0.46 Score=45.90 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=28.4
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
.+.+|||+.-.-..--+...++-+| |++++|++||||--.-
T Consensus 48 ~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~GNhDk~~~ 88 (186)
T COG4186 48 VLWHLGDLSSGANRERAAGLILERL----NGRKHLVPGNHDKCHP 88 (186)
T ss_pred eEEEecccccccchhhHHHHHHHHc----CCcEEEeeCCCCCCcc
Confidence 6889999985444434444444444 6899999999997543
No 150
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=92.67 E-value=0.24 Score=50.45 Aligned_cols=66 Identities=20% Similarity=0.124 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-HHHHHHHHHHhcC---------------------C
Q 002740 588 DLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL-ETITLLLALKIEY---------------------P 645 (885)
Q Consensus 588 DiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~-evl~ll~~lk~~~---------------------p 645 (885)
|++|+=.=|.++++.+-....- ..++||||++|.|--+- |-......++..+ .
T Consensus 24 d~~~~D~YL~~~~~~~~~~l~P-----d~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~ 98 (193)
T cd08164 24 DLFGNDYFLGHIVSMMQFWLKP-----DAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGK 98 (193)
T ss_pred hhhhhHHHHHHHHHHHHHhcCC-----CEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCC
Confidence 4456655567777665432111 16889999999985433 3334444444333 1
Q ss_pred CcEEEeccCCccc
Q 002740 646 ENVHLIRGNHEAA 658 (885)
Q Consensus 646 ~~v~llrGNHE~~ 658 (885)
-.+++|.||||.-
T Consensus 99 i~~i~V~GNHDIG 111 (193)
T cd08164 99 TPLINIAGNHDVG 111 (193)
T ss_pred ceEEEECCcccCC
Confidence 4578999999984
No 151
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=91.34 E-value=3.3 Score=47.48 Aligned_cols=200 Identities=20% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCeEEEecCCC-CH----HHHHHHHHHhCCCCCCCCcceeeEEE-eccccCC-C-----------CChHHHHHHHHHHHh
Q 002740 581 APVKVFGDLHG-QF----GDLMRLFDEYGFPSTAGDITYIDYLF-LGDYVDR-G-----------QHSLETITLLLALKI 642 (885)
Q Consensus 581 ~~i~vvGDiHG-~~----~~L~~il~~~g~~~~~~~~~~~~~vf-LGDyvDR-G-----------~~s~evl~ll~~lk~ 642 (885)
..+.+++|||= .. +.+.++++.++-+.+ .....+|+. -||.||- | .+..|-+..+..+--
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~--~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~ 303 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGD--LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLD 303 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcc--cccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHh
Confidence 34889999996 22 334444444444332 112336665 7799993 2 233444555555555
Q ss_pred cCCC--cEEEeccCCcccchhhhc-CChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEe-CeEEEecCCCCCCCcCHH
Q 002740 643 EYPE--NVHLIRGNHEAADINALF-GFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIE-KKIICMHGGIGRSIHSVE 718 (885)
Q Consensus 643 ~~p~--~v~llrGNHE~~~~~~~~-gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~-~~il~vHgGi~~~~~~~~ 718 (885)
.-|. .|++.+||||..-..... +|.+.....| ...+-.|-.=|.-.-++ ..+|..|| .+++
T Consensus 304 ~vp~~I~v~i~PGnhDa~r~a~PQp~~~~~~kslf---------~~~n~~~v~NP~~~~l~G~~vL~~hG------~sid 368 (481)
T COG1311 304 QVPEHIKVFIMPGNHDAVRQALPQPHFPELIKSLF---------SLNNLLFVSNPALVSLHGVDVLIYHG------RSID 368 (481)
T ss_pred hCCCCceEEEecCCCCccccccCCCCcchhhcccc---------cccceEecCCCcEEEECCEEEEEecC------CCHH
Confidence 5565 588899999986554333 2333222222 22211121223333333 46888888 5677
Q ss_pred HhhcccCCcccCCCC-------------cchhccccCCCCCCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEe
Q 002740 719 QIEKLERPITMDAGS-------------IILMDLLWSDPTENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRA 785 (885)
Q Consensus 719 ~i~~~~rp~~~~~~~-------------~~~~dllWsdP~~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~ 785 (885)
||...-.....+.-. +..-+-+|.-|...| +| +++ ---++++-|
T Consensus 369 Dii~~vP~~~~~~~~~ame~lLk~rHlaPtygg~~p~aP~~kD---------------~l---VIe-----evPDv~~~G 425 (481)
T COG1311 369 DIIKLVPGADYDSPLKAMEELLKRRHLAPTYGGTLPIAPETKD---------------YL---VIE-----EVPDVFHTG 425 (481)
T ss_pred HHHhhCCCCCccchHHHHHHHHHhcccCCCCCCccccccCCcC---------------ce---eec-----cCCcEEEEc
Confidence 765543332221111 112233444443311 01 011 114577889
Q ss_pred ccccccceEEecCCeEEEEeecccccCCCCCeEEEEEEcC
Q 002740 786 HECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGR 825 (885)
Q Consensus 786 H~~~~~G~~~~~~~~~itvfSa~~y~~~~~n~ga~l~~~~ 825 (885)
|+.. .|+..+.+.++|-.++-+.+... +-++.|+.
T Consensus 426 hvh~-~g~~~y~gv~~vns~T~q~qTef----qk~vni~p 460 (481)
T COG1311 426 HVHK-FGTGVYEGVNLVNSGTWQEQTEF----QKMVNINP 460 (481)
T ss_pred cccc-cceeEEeccceEEeeeecchhcc----ceEEEecC
Confidence 9876 88999889899988888766532 34554443
No 152
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=91.12 E-value=0.28 Score=50.53 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHH-------------------------HH
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLET-------------------------IT 635 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~ev-------------------------l~ 635 (885)
..|..++|.||+++.|.++.+.+.-...+ -++|+||++-....+-|- |.
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D------~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPD------AVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-S------EEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCC------EEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 45899999999999999998776433333 799999999755444333 33
Q ss_pred HHHHHHhcCCCcEEEeccCCcccc
Q 002740 636 LLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 636 ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
-++..--..+--++.|+||||...
T Consensus 80 ~ff~~L~~~~~p~~~vPG~~Dap~ 103 (255)
T PF14582_consen 80 KFFRILGELGVPVFVVPGNMDAPE 103 (255)
T ss_dssp HHHHHHHCC-SEEEEE--TTS-SH
T ss_pred HHHHHHHhcCCcEEEecCCCCchH
Confidence 333333455668999999999854
No 153
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.49 E-value=45 Score=39.82 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=63.2
Q ss_pred CcEEEEECCCCc--EEEecCCCC-C-C---cccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecC
Q 002740 75 NSVHLYDVLTRK--WTRIRPAGE-P-P---SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG 147 (885)
Q Consensus 75 ~dv~~yD~~t~~--W~~l~~~~~-~-P---~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~ 147 (885)
+.++.+|..+++ |+.-..... . + ......+.++.+++||+... ...++++|..+.+..|+.-. .
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~W~~~~--~ 149 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVVWSKKN--G 149 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEEeeccc--c
Confidence 468999998764 875432110 0 0 00112234566788887432 23499999999888897642 1
Q ss_pred CCCCC-ccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcC
Q 002740 148 QGPGP-RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 197 (885)
Q Consensus 148 ~~p~~-R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~ 197 (885)
..... ....+-++.++ .+|+.........-..+..||.++....|+.-.
T Consensus 150 ~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 150 DYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred cccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 11111 11122333444 666543222222345799999999887887654
No 154
>PLN02533 probable purple acid phosphatase
Probab=90.40 E-value=0.41 Score=55.34 Aligned_cols=70 Identities=17% Similarity=0.095 Sum_probs=39.2
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH--H-HHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL--E-TITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~--e-vl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
.+++++||+|-. ......++.+.....+ -+|++||+++-+.+.- + -..++..+.... -++.+.||||.
T Consensus 140 ~~f~v~GDlG~~-~~~~~tl~~i~~~~pD------~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~--P~m~~~GNHE~ 210 (427)
T PLN02533 140 IKFAVSGDLGTS-EWTKSTLEHVSKWDYD------VFILPGDLSYANFYQPLWDTFGRLVQPLASQR--PWMVTHGNHEL 210 (427)
T ss_pred eEEEEEEeCCCC-cccHHHHHHHHhcCCC------EEEEcCccccccchHHHHHHHHHHhhhHhhcC--ceEEeCccccc
Confidence 458999999532 2222333333222222 5888999997543321 1 223333333333 48899999998
Q ss_pred cc
Q 002740 658 AD 659 (885)
Q Consensus 658 ~~ 659 (885)
..
T Consensus 211 ~~ 212 (427)
T PLN02533 211 EK 212 (427)
T ss_pred cc
Confidence 64
No 155
>PRK13684 Ycf48-like protein; Provisional
Probab=88.88 E-value=44 Score=37.36 Aligned_cols=182 Identities=15% Similarity=0.223 Sum_probs=86.2
Q ss_pred EEEEECCCCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccc
Q 002740 77 VHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYG 155 (885)
Q Consensus 77 v~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~-~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~ 155 (885)
+++=+-.-.+|+++......| ........++ +.+++.|..+ .+++-+-.. -+|+.+.. +..-.-
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~--~~~~~i~~~~~~~~~~~g~~G-------~i~~S~DgG--~tW~~~~~----~~~g~~ 175 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLP--GSPYLITALGPGTAEMATNVG-------AIYRTTDGG--KNWEALVE----DAAGVV 175 (334)
T ss_pred EEEECCCCCCCeEccCCcCCC--CCceEEEEECCCcceeeeccc-------eEEEECCCC--CCceeCcC----CCcceE
Confidence 444333346899886321122 2223344443 4556655421 133322222 35998732 222234
Q ss_pred cEEEEECCcEEEEEecCCCCcccCcEEEE-eCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccc
Q 002740 156 HVMDLVSQRYLVSVSGNDGKRVLSDAWAL-DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (885)
Q Consensus 156 h~~~~~~~~~lyv~GG~~~~~~~ndv~~~-d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~d 234 (885)
+.+....++.+++.|.. + .++.. |.... +|+.+... ..+..++.....++.++++|...
T Consensus 176 ~~i~~~~~g~~v~~g~~-G-----~i~~s~~~gg~--tW~~~~~~----~~~~l~~i~~~~~g~~~~vg~~G-------- 235 (334)
T PRK13684 176 RNLRRSPDGKYVAVSSR-G-----NFYSTWEPGQT--AWTPHQRN----SSRRLQSMGFQPDGNLWMLARGG-------- 235 (334)
T ss_pred EEEEECCCCeEEEEeCC-c-----eEEEEcCCCCC--eEEEeeCC----CcccceeeeEcCCCCEEEEecCC--------
Confidence 45545555555554432 2 24433 34434 79888542 44455565566777888876531
Q ss_pred eEEEE-cCCCCeeEEEeCCCCCCCccc-eeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccC
Q 002740 235 AYGLL-MHRNGQWEWTLAPGVAPSPRY-QHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 235 v~~l~-~~~~~~W~w~~~~~~~P~~R~-~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...+. ......|+ ..........+ -+++++. ++.+|++|.. ..++.-.....+|..+..
T Consensus 236 ~~~~~s~d~G~sW~--~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~----------G~v~~S~d~G~tW~~~~~ 297 (334)
T PRK13684 236 QIRFNDPDDLESWS--KPIIPEITNGYGYLDLAYRTPGEIWAGGGN----------GTLLVSKDGGKTWEKDPV 297 (334)
T ss_pred EEEEccCCCCCccc--cccCCccccccceeeEEEcCCCCEEEEcCC----------CeEEEeCCCCCCCeECCc
Confidence 11221 22222444 43211011112 2333444 5678888752 224444445579999864
No 156
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=88.76 E-value=0.67 Score=50.34 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHH-cCCeEEEEecccc
Q 002740 769 RVSDFCKR-NKLQLIIRAHECV 789 (885)
Q Consensus 769 ~~~~fl~~-~~l~~iiR~H~~~ 789 (885)
...+++++ -++++||-||+-+
T Consensus 208 ~~~~la~~~~~vD~IlgGHsH~ 229 (277)
T cd07410 208 AAYELAEEVPGIDAILTGHQHR 229 (277)
T ss_pred HHHHHHhcCCCCcEEEeCCCcc
Confidence 34566666 6899999999865
No 157
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=88.74 E-value=1.1 Score=51.25 Aligned_cols=73 Identities=21% Similarity=0.169 Sum_probs=48.4
Q ss_pred CeEEEecCCCC-------------HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcC---C
Q 002740 582 PVKVFGDLHGQ-------------FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEY---P 645 (885)
Q Consensus 582 ~i~vvGDiHG~-------------~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~---p 645 (885)
++..++|+|=- +.+|..+++.+.-...+ -+|+-||+.|++.-|.+++.++...-.+. .
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD------~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~ 75 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVD------FVLIAGDLFDTNNPSPRALKLFLEALRRLKDAG 75 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCC------EEEEccccccCCCCCHHHHHHHHHHHHHhccCC
Confidence 56778888843 23344444444322222 58889999999999988887665542222 2
Q ss_pred CcEEEeccCCcccch
Q 002740 646 ENVHLIRGNHEAADI 660 (885)
Q Consensus 646 ~~v~llrGNHE~~~~ 660 (885)
-.|++|.||||...-
T Consensus 76 Ipv~~I~GNHD~~~~ 90 (390)
T COG0420 76 IPVVVIAGNHDSPSR 90 (390)
T ss_pred CcEEEecCCCCchhc
Confidence 369999999998653
No 158
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.44 E-value=6.1 Score=42.97 Aligned_cols=125 Identities=16% Similarity=0.179 Sum_probs=69.9
Q ss_pred EEEcCcC-CCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCc-ccCcEEEEeCCCCC
Q 002740 113 VFQGGIG-PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKR-VLSDAWALDTAQKP 190 (885)
Q Consensus 113 yv~GG~~-~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~-~~ndv~~~d~~t~~ 190 (885)
||.|-.. .+......+..||..+. +|..+ +..-.. .-.++....+..+|+.|-..... ....+-.||..+.
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~--qW~~~---g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~- 74 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNS--QWSSP---GNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ- 74 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCC--EeecC---CCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-
Confidence 4444443 33345678999999984 59988 433211 12344344566888777543333 4456888999998
Q ss_pred eeEEEcCCC--CCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCC
Q 002740 191 YVWQRLNPE--GDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPG 253 (885)
Q Consensus 191 ~~W~~l~~~--g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~ 253 (885)
+|..+... ...|.+-..-.........+++.|.. ..+ ..-+..|+-. +|..+..
T Consensus 75 -~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g--~~~l~~~dGs-----~W~~i~~ 130 (281)
T PF12768_consen 75 -TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG--STFLMKYDGS-----SWSSIGS 130 (281)
T ss_pred -eeeecCCcccccCCCcEEEEEeeccCCceEEEecee-cCC--CceEEEEcCC-----ceEeccc
Confidence 99988763 24454432222222233467776654 222 2234555333 5666643
No 159
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=88.18 E-value=16 Score=40.94 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=75.7
Q ss_pred CCCCCcccccceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEE--E----
Q 002740 8 HPAPSYRTLETYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLY--D---- 81 (885)
Q Consensus 8 ~~~~~y~~~~~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~y--D---- 81 (885)
..+..||..+......+.++.+...-.+..+ +++||+............. ....++.+ +
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~pk~~pisv~V------G~~LY~m~~~~~~~~~~~~---------~~~~FE~l~~~~~~~ 150 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHSPKRCPISVSV------GDKLYAMDRSPFPEPAGRP---------DFPCFEALVYRPPPD 150 (342)
T ss_pred CCeEEEECCCCeEeccCCCCCCCcceEEEEe------CCeEEEeeccCccccccCc---------cceeEEEeccccccc
Confidence 3467899999988888887777766666666 7889999887655321000 00033333 3
Q ss_pred ----CCCCcEEEecCCCCCCcccCc-------cEEEEE-CCEEEE-EcCcCCCCCccccEEEEEecCCccEEEEEeecCC
Q 002740 82 ----VLTRKWTRIRPAGEPPSPRAA-------HAAAAV-GTMVVF-QGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ 148 (885)
Q Consensus 82 ----~~t~~W~~l~~~~~~P~~R~~-------ha~~~~-~~~iyv-~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~ 148 (885)
...-.|+.+++ ||..+.. .+-+++ +..||| .-|.. .-.|+||..+. +|.++ |+
T Consensus 151 ~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~--~W~~~---Gd 216 (342)
T PF07893_consen 151 DPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESH--EWRKH---GD 216 (342)
T ss_pred cccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCc--ceeec---cc
Confidence 22346887764 3433322 233444 668888 44321 23899999884 59998 77
Q ss_pred CCCCccccEE
Q 002740 149 GPGPRYGHVM 158 (885)
Q Consensus 149 ~p~~R~~h~~ 158 (885)
-..|=.|.+-
T Consensus 217 W~LPF~G~a~ 226 (342)
T PF07893_consen 217 WMLPFHGQAE 226 (342)
T ss_pred eecCcCCccE
Confidence 7666666655
No 160
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=87.02 E-value=0.59 Score=54.94 Aligned_cols=57 Identities=30% Similarity=0.346 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHcCCe----EEEEeccccc--cceE-EecCCeEEEE---eecccccCCCCCeEEEEEE
Q 002740 766 GPDRVSDFCKRNKLQ----LIIRAHECVM--DGFE-RFAQGQLITL---FSATNYCGTANNAGAILVV 823 (885)
Q Consensus 766 g~~~~~~fl~~~~l~----~iiR~H~~~~--~G~~-~~~~~~~itv---fSa~~y~~~~~n~ga~l~~ 823 (885)
.++..++.|+..||+ .||-||.+|. +|=. .-++||++.| ||.. |..+.+=+|=-|+.
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTLiy 573 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTLIY 573 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEEEe
Confidence 677888999999999 9999999996 5644 4589999999 7764 55554445544443
No 161
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=86.86 E-value=2.2 Score=38.39 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHhCCCCCCCCCCcccccCHHHHHHHHHHHHHHHhcCCceeee
Q 002740 527 PQGLHKKIISTLLRPRNWKAPANRRFFLDSYEVGELCYAAEQIFMQEPTVLQL 579 (885)
Q Consensus 527 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ep~~l~~ 579 (885)
+..+++.+|+.+-+.+ .|+...+..|+.++.++|+++|+++++
T Consensus 53 t~efv~~mie~FK~~K----------~Lhkkyv~~Il~~~~~llk~~PslVeI 95 (95)
T PF08321_consen 53 TLEFVKAMIEWFKNQK----------KLHKKYVYQILLEAKKLLKQLPSLVEI 95 (95)
T ss_dssp -HHHHHHHHHHHHCT--------------HHHHHHHHHHHHHHHHTS-SEEEE
T ss_pred CHHHHHHHHHHHHhCC----------CccHHHHHHHHHHHHHHHHhCcCccCC
Confidence 4467888888877553 478899999999999999999999985
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=85.76 E-value=35 Score=38.88 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~ 124 (885)
.-.+++.+|..+. -.+|..|=..|. .+..+.-.-.|-.....+..|...++++|.
T Consensus 224 ~~plllvaG~d~~-----------------lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r------ 278 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT-----------------LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR------ 278 (514)
T ss_pred CCceEEEecCCCc-----------------EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc------
Confidence 3468888888743 345666666654 333221100111111112224447777774
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..-+|.||+.+.+ -.++......+ .+.-+...+.....++++-|+.+ -+..+...|+ .|..---. .
T Consensus 279 rky~ysyDle~ak--~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~--eli~s~Ki----e 344 (514)
T KOG2055|consen 279 RKYLYSYDLETAK--VTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTK--ELITSFKI----E 344 (514)
T ss_pred ceEEEEeeccccc--cccccCCCCcc-cchhheeEecCCCCeEEEcccCc-----eEEeehhhhh--hhhheeee----c
Confidence 2448999998854 66663323333 33333333334445777778766 3556666665 44221111 2
Q ss_pred ccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCC-eeEEEeCCCCCCCccceeEEEE-ECCEEEEEcc
Q 002740 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNG-QWEWTLAPGVAPSPRYQHAAVF-VGARLHVTGG 276 (885)
Q Consensus 205 ~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~-~W~w~~~~~~~P~~R~~hs~~~-~~~~i~V~GG 276 (885)
.+....+......+|+++||. ..||.++...+. .-+|+.-.+. ++-+.|. .++..+..|-
T Consensus 345 G~v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 345 GVVSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGS 406 (514)
T ss_pred cEEeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEecc
Confidence 223333333455678888874 468888887652 2234443222 2333332 3555555543
No 163
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=85.07 E-value=54 Score=34.48 Aligned_cols=191 Identities=12% Similarity=0.063 Sum_probs=99.7
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCC-
Q 002740 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGP- 150 (885)
Q Consensus 74 ~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p- 150 (885)
.+.++++|+.+.+-+.+...+ ..+++.. ++.+|+....+ +.++|+.+.+ +..+.......
T Consensus 21 ~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g~l~v~~~~~--------~~~~d~~~g~--~~~~~~~~~~~~ 83 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDGRLYVADSGG--------IAVVDPDTGK--VTVLADLPDGGV 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEESSS-------EEEEEEECTTSEEEEEETTC--------EEEEETTTTE--EEEEEEEETTCS
T ss_pred CCEEEEEECCCCeEEEEecCC-------CceEEEEccCCEEEEEEcCc--------eEEEecCCCc--EEEEeeccCCCc
Confidence 578999999998777655332 3344444 67888876532 5667888854 77664432111
Q ss_pred CCccccEEEEECCcEEEEEecCCCC-ccc--CcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCC-EEEEEccCC
Q 002740 151 GPRYGHVMDLVSQRYLVSVSGNDGK-RVL--SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGRD 226 (885)
Q Consensus 151 ~~R~~h~~~~~~~~~lyv~GG~~~~-~~~--ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~-~l~v~GG~~ 226 (885)
....-.-+++..++.+|+.--.... ... ..+|+++.. . +...+... ... -...+...++ .||+.--
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~~----~~~-pNGi~~s~dg~~lyv~ds-- 153 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVADG----LGF-PNGIAFSPDGKTLYVADS-- 153 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEEE----ESS-EEEEEEETTSSEEEEEET--
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C--eEEEEecC----ccc-ccceEECCcchheeeccc--
Confidence 2222223445556678864322211 112 569999998 4 44444322 111 1233334454 6776322
Q ss_pred CCCCcccceEEEEcCCCCe-eEEEeCC-CCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEc
Q 002740 227 ASGAPLADAYGLLMHRNGQ-WEWTLAP-GVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDR 303 (885)
Q Consensus 227 ~~~~~l~dv~~l~~~~~~~-W~w~~~~-~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v 303 (885)
....+|.|+....+. +.-...- .......+--++++- ++.|||..- . ...|++||++...-..+
T Consensus 154 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~--~-------~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 154 ----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW--G-------GGRIVVFDPDGKLLREI 220 (246)
T ss_dssp ----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE--T-------TTEEEEEETTSCEEEEE
T ss_pred ----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc--C-------CCEEEEECCCccEEEEE
Confidence 245589998865432 4322211 111111222344443 688998732 1 24599999996666655
Q ss_pred c
Q 002740 304 N 304 (885)
Q Consensus 304 ~ 304 (885)
.
T Consensus 221 ~ 221 (246)
T PF08450_consen 221 E 221 (246)
T ss_dssp E
T ss_pred c
Confidence 5
No 164
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=84.71 E-value=1.9 Score=46.71 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCeEEEEecccc
Q 002740 767 PDRVSDFCKRNKLQLIIRAHECV 789 (885)
Q Consensus 767 ~~~~~~fl~~~~l~~iiR~H~~~ 789 (885)
...+.+++++.++++++-||.-.
T Consensus 190 ~~~l~~l~~~~~v~~vl~GH~H~ 212 (277)
T cd07378 190 VDRLLPLLKKYKVDAYLSGHDHN 212 (277)
T ss_pred HHHHHHHHHHcCCCEEEeCCccc
Confidence 46788899999999999999755
No 165
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=83.79 E-value=2.1 Score=48.39 Aligned_cols=42 Identities=33% Similarity=0.426 Sum_probs=32.3
Q ss_pred eEEEeccccCCCCC--hHHHHHHHHHHHhcCCC----cEEEeccCCcc
Q 002740 616 DYLFLGDYVDRGQH--SLETITLLLALKIEYPE----NVHLIRGNHEA 657 (885)
Q Consensus 616 ~~vfLGDyvDRG~~--s~evl~ll~~lk~~~p~----~v~llrGNHE~ 657 (885)
-++||||++|-|.. .-|--.....+|..|+. .++.+.||||-
T Consensus 96 vvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 96 VVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred EEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 57889999998874 34555666667666664 68999999997
No 166
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=83.29 E-value=58 Score=36.94 Aligned_cols=238 Identities=12% Similarity=0.057 Sum_probs=113.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEE-cCcCCCCC
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQ-GGIGPAGH 123 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~-GG~~~~~~ 123 (885)
+++-+||+|... . ...+|.+|+.+.+=++|.... .....+-..+.-++.+|++ .+
T Consensus 46 dG~kllF~s~~d-g---------------~~nly~lDL~t~~i~QLTdg~--g~~~~g~~~s~~~~~~~Yv~~~------ 101 (386)
T PF14583_consen 46 DGRKLLFASDFD-G---------------NRNLYLLDLATGEITQLTDGP--GDNTFGGFLSPDDRALYYVKNG------ 101 (386)
T ss_dssp TS-EEEEEE-TT-S---------------S-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSSEEEEEETT------
T ss_pred CCCEEEEEeccC-C---------------CcceEEEEcccCEEEECccCC--CCCccceEEecCCCeEEEEECC------
Confidence 667777776642 1 467999999999999997431 1222332222224566554 33
Q ss_pred ccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecC----CC--------------CcccCcEEEE
Q 002740 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGN----DG--------------KRVLSDAWAL 184 (885)
Q Consensus 124 ~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~----~~--------------~~~~ndv~~~ 184 (885)
..|+.+|+.+.+ =..+ -..|..-.+....+. .++..++ |=. +. ......+...
T Consensus 102 --~~l~~vdL~T~e--~~~v---y~~p~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 102 --RSLRRVDLDTLE--ERVV---YEVPDDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp --TEEEEEETTT----EEEE---EE--TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred --CeEEEEECCcCc--EEEE---EECCcccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 358889988844 3333 223333333222222 2333322 211 00 1234567888
Q ss_pred eCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEE
Q 002740 185 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAA 264 (885)
Q Consensus 185 d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~ 264 (885)
|+.+. +.+.+-.. ..-.+|.-..-.+..+++|.-...-...-..+|.++....+ ..++....+.-..+|-.
T Consensus 174 dl~tG--~~~~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~---~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 174 DLKTG--ERKVVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN---VKKVHRRMEGESVGHEF 244 (386)
T ss_dssp ETTT----EEEEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------EESS---TTEEEEEEE
T ss_pred ECCCC--ceeEEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc---ceeeecCCCCccccccc
Confidence 99887 66666543 33345666666666677664332222223479999977653 23333333456667766
Q ss_pred EEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEc
Q 002740 265 VFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYG 344 (885)
Q Consensus 265 ~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~G 344 (885)
-..++..+.+-++..++. ..-+..||+.+.+=+.+..+ +++.|=....++++++-=
T Consensus 245 w~~DG~~i~y~~~~~~~~----~~~i~~~d~~t~~~~~~~~~--------------------p~~~H~~ss~Dg~L~vGD 300 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQ----DFWIAGYDPDTGERRRLMEM--------------------PWCSHFMSSPDGKLFVGD 300 (386)
T ss_dssp E-TTSS-EEEEEEETTT------EEEEEE-TTT--EEEEEEE---------------------SEEEEEE-TTSSEEEEE
T ss_pred ccCCCCEEEEEeecCCCC----ceEEEeeCCCCCCceEEEeC--------------------CceeeeEEcCCCCEEEec
Confidence 666554333323322222 23488899998754444333 567788888888998877
Q ss_pred CCC
Q 002740 345 GLK 347 (885)
Q Consensus 345 G~~ 347 (885)
|.+
T Consensus 301 G~d 303 (386)
T PF14583_consen 301 GGD 303 (386)
T ss_dssp E--
T ss_pred CCC
Confidence 764
No 167
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=83.26 E-value=1.7 Score=47.50 Aligned_cols=66 Identities=26% Similarity=0.351 Sum_probs=40.6
Q ss_pred CeEEEecCCCCHHH--------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-h-----HHHHHHHHHHH
Q 002740 582 PVKVFGDLHGQFGD--------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-S-----LETITLLLALK 641 (885)
Q Consensus 582 ~i~vvGDiHG~~~~--------------L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~-s-----~evl~ll~~lk 641 (885)
.|+.+.|+||++.. |..+++........ .-+|..||+++..+. + ..++.+|-++.
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g 76 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPN-----SLFVSAGDLIGASPFESALLQDEPTIEALNAMG 76 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCC-----eEEEeCCcccccccchhhcccCCcHHHHHHhhC
Confidence 47889999998653 55556554322111 256779999976654 2 24555555553
Q ss_pred hcCCCcEEEeccCCcc
Q 002740 642 IEYPENVHLIRGNHEA 657 (885)
Q Consensus 642 ~~~p~~v~llrGNHE~ 657 (885)
. . .+..||||.
T Consensus 77 ~----D-a~t~GNHef 87 (288)
T cd07412 77 V----D-ASAVGNHEF 87 (288)
T ss_pred C----e-eeeeccccc
Confidence 2 2 355599996
No 168
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=82.24 E-value=2.4 Score=45.53 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=38.1
Q ss_pred CeEEEecCCCCHH----------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHHhcCCC
Q 002740 582 PVKVFGDLHGQFG----------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPE 646 (885)
Q Consensus 582 ~i~vvGDiHG~~~----------~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s-----~evl~ll~~lk~~~p~ 646 (885)
.|+-+.|+||++. .|..+++...-.+. .-+|..||+++..+.+ ..++..|-++. -
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~------~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~ 71 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDN------DLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----Y 71 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCC------EEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----C
Confidence 4778999999854 35555555432111 2567799999865533 23333333332 2
Q ss_pred cEEEeccCCcc
Q 002740 647 NVHLIRGNHEA 657 (885)
Q Consensus 647 ~v~llrGNHE~ 657 (885)
.+ +..||||.
T Consensus 72 d~-~~~GNHef 81 (257)
T cd07408 72 DA-VTPGNHEF 81 (257)
T ss_pred cE-Eccccccc
Confidence 34 45699995
No 169
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=80.44 E-value=53 Score=35.28 Aligned_cols=176 Identities=17% Similarity=0.258 Sum_probs=84.6
Q ss_pred eEEEeccccCCCCC------------------hHHHHHHHHHHHhcCC--CcEEEeccCCcccchhhhcCChHHHHHHhC
Q 002740 616 DYLFLGDYVDRGQH------------------SLETITLLLALKIEYP--ENVHLIRGNHEAADINALFGFRLECIERMG 675 (885)
Q Consensus 616 ~~vfLGDyvDRG~~------------------s~evl~ll~~lk~~~p--~~v~llrGNHE~~~~~~~~gf~~e~~~~~~ 675 (885)
++|+.||.|+.-.. ..+-+..+-.+-..-+ -.|.++.||||-.......--...|+- .
T Consensus 45 rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lf--p 122 (257)
T cd07387 45 RLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLF--P 122 (257)
T ss_pred EEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHh--h
Confidence 68889999985432 2333333322222222 258899999998776544432222221 1
Q ss_pred CCcchhhhhhhhhhccCCceEEEEeC-eEEEecCCCCCCCcCHHHhhcccC---Cccc-------CCCCcchhccccCCC
Q 002740 676 ENDGIWAWTRFNQLFNCLPLAALIEK-KIICMHGGIGRSIHSVEQIEKLER---PITM-------DAGSIILMDLLWSDP 744 (885)
Q Consensus 676 ~~~~~~~~~~~~~~f~~LP~~~~i~~-~il~vHgGi~~~~~~~~~i~~~~r---p~~~-------~~~~~~~~dllWsdP 744 (885)
.. ..+..+. +-.=|....+++ ++|.+|| ++++||.+.-. ++++ -.-.+..-|-||.=|
T Consensus 123 ~s---~~~~~~~--~vtNP~~~~i~g~~vLgtsG------qni~Di~ky~~~~~~l~~me~~L~wrHlaPTaPDTL~~yP 191 (257)
T cd07387 123 KS---SNYSTLN--LVTNPYEFSIDGVRVLGTSG------QNVDDILKYSSLESRLDILERTLKWRHIAPTAPDTLWCYP 191 (257)
T ss_pred cc---cccCCcE--EeCCCeEEEECCEEEEEECC------CCHHHHHHhCCCCCHHHHHHHHHHhcccCCCCCCcccccc
Confidence 10 0011111 112266666665 6788888 34555543211 1110 001123345566666
Q ss_pred C-CCCCCCCcccCCCCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEec--CCeEEEEeecccccCCCCCeEEEE
Q 002740 745 T-ENDSIEGLRPNARGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERFA--QGQLITLFSATNYCGTANNAGAIL 821 (885)
Q Consensus 745 ~-~~~~~~~~~~n~rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~--~~~~itvfSa~~y~~~~~n~ga~l 821 (885)
- +.| .|.-.. ==..++-|||.. -|.+.+. +++-+.+.|.|.|.. .|.++
T Consensus 192 ~~~~D---pfvi~~--------------------~PhVyf~Gnq~~-f~t~~~~~~~~~~v~lv~vP~Fs~----t~~~v 243 (257)
T cd07387 192 FTDRD---PFILEE--------------------CPHVYFAGNQPK-FGTKLVEGEEGQRVLLVCVPSFSK----TGTAV 243 (257)
T ss_pred CCCCC---ceeecC--------------------CCCEEEeCCCcc-eeeeEEEcCCCCeEEEEEeCCcCc----CCEEE
Confidence 3 211 111110 023455677765 4444443 366777888898864 34444
Q ss_pred EE-cCcceEEeE
Q 002740 822 VV-GRGLVVVPK 832 (885)
Q Consensus 822 ~~-~~~~~~~~~ 832 (885)
+| =+++.+.+.
T Consensus 244 lvdl~tLe~~~v 255 (257)
T cd07387 244 LVNLRTLECEPI 255 (257)
T ss_pred EEECCcCcEEEE
Confidence 44 345665543
No 170
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=80.42 E-value=1.1e+02 Score=34.59 Aligned_cols=195 Identities=18% Similarity=0.288 Sum_probs=101.6
Q ss_pred cCcEEEEECCCCc--EEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCC
Q 002740 74 TNSVHLYDVLTRK--WTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yD~~t~~--W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~ 151 (885)
...++.+|+.+.+ |+.-.... ...........+++||+....+ .+++||..+.+..|..-... .
T Consensus 77 ~G~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~g-------~~y~ld~~~G~~~W~~~~~~---~- 142 (370)
T COG1520 77 DGNIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWDG-------KLYALDASTGTLVWSRNVGG---S- 142 (370)
T ss_pred CCcEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEecccc-------eEEEEECCCCcEEEEEecCC---C-
Confidence 3579999999876 97544320 0111111222267777755432 69999998777889876332 1
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCc
Q 002740 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 152 ~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~ 231 (885)
.+..... +..+..+|+.. .-+.++++|..+....|..-...+ . ..+...+.. ..++.+|+.... .
T Consensus 143 ~~~~~~~-v~~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~-~~~~~vy~~~~~----~- 207 (370)
T COG1520 143 PYYASPP-VVGDGTVYVGT------DDGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPA-IASGTVYVGSDG----Y- 207 (370)
T ss_pred eEEecCc-EEcCcEEEEec------CCCeEEEEEccCCcEEEEEecCCc-c-ccccccCce-eecceEEEecCC----C-
Confidence 3333333 34444555422 224689999998878898654432 1 222222222 567777774221 1
Q ss_pred ccceEEEEcCCCCeeEEEeC----CCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCC--eEEEccC
Q 002740 232 LADAYGLLMHRNGQWEWTLA----PGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAG--VWLDRNG 305 (885)
Q Consensus 232 l~dv~~l~~~~~~~W~w~~~----~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~--~W~~v~~ 305 (885)
-..++.++.. +|.-.|... .+..... -...+.++.+++-||...... ...+.++|..+. .|+.-..
T Consensus 208 ~~~~~a~~~~-~G~~~w~~~~~~~~~~~~~~---~~~~~~~~~v~v~~~~~~~~~----~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 208 DGILYALNAE-DGTLKWSQKVSQTIGRTAIS---TTPAVDGGPVYVDGGVYAGSY----GGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred cceEEEEEcc-CCcEeeeeeeecccCccccc---ccccccCceEEECCcEEEEec----CCeEEEEEcCCCceEEEEecc
Confidence 2257888775 345555532 2211110 012333445555544211110 233778877765 5876654
No 171
>PRK05137 tolB translocation protein TolB; Provisional
Probab=79.38 E-value=1.3e+02 Score=34.85 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=68.7
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..+|++|+.+.+ ...+. ..+.... ..... ++..+++....++ ..++|.+|+.+. ....+....
T Consensus 226 ~~i~~~dl~~g~--~~~l~---~~~g~~~--~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~Lt~~~---- 289 (435)
T PRK05137 226 PRVYLLDLETGQ--RELVG---NFPGMTF--APRFSPDGRKVVMSLSQGG---NTDIYTMDLRSG--TTTRLTDSP---- 289 (435)
T ss_pred CEEEEEECCCCc--EEEee---cCCCccc--CcEECCCCCEEEEEEecCC---CceEEEEECCCC--ceEEccCCC----
Confidence 579999998754 55552 2222111 12222 3334444333322 357999999887 556664321
Q ss_pred ccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECC-EEEEEcccCCCCCC
Q 002740 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA-RLHVTGGALRGGRA 283 (885)
Q Consensus 205 ~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~-~i~V~GG~~~~~~~ 283 (885)
. .........++..++|.... .+ ..++|.++.... ..+.+... ..++......-++ .|++.. ... +
T Consensus 290 ~-~~~~~~~spDG~~i~f~s~~-~g--~~~Iy~~d~~g~-~~~~lt~~----~~~~~~~~~SpdG~~ia~~~-~~~-~-- 356 (435)
T PRK05137 290 A-IDTSPSYSPDGSQIVFESDR-SG--SPQLYVMNADGS-NPRRISFG----GGRYSTPVWSPRGDLIAFTK-QGG-G-- 356 (435)
T ss_pred C-ccCceeEcCCCCEEEEEECC-CC--CCeEEEEECCCC-CeEEeecC----CCcccCeEECCCCCEEEEEE-cCC-C--
Confidence 1 11122334555444443311 11 246888876543 22222211 1122121122244 444433 211 1
Q ss_pred ccCCCcEEEEECCCCeEEEcc
Q 002740 284 IEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|+.+.....+.
T Consensus 357 ---~~~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 357 ---QFSIGVMKPDGSGERILT 374 (435)
T ss_pred ---ceEEEEEECCCCceEecc
Confidence 246899998777665554
No 172
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=79.05 E-value=4.1 Score=43.92 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=20.6
Q ss_pred EEEeccccCCCCChH-----HHHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 617 YLFLGDYVDRGQHSL-----ETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 617 ~vfLGDyvDRG~~s~-----evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
+|..||+++..+.+. .++.+|-++ + --.+. ||||.
T Consensus 55 ~l~~GD~~~gs~~~~~~~g~~~~~~l~~~----g-~da~~-GNHef 94 (264)
T cd07411 55 LLDGGDTWQGSGEALYTRGQAMVDALNAL----G-VDAMV-GHWEF 94 (264)
T ss_pred EEeCCCccCCChHHhhcCChhHHHHHHhh----C-CeEEe-ccccc
Confidence 456999998765432 334444443 2 22334 99996
No 173
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=78.46 E-value=32 Score=32.43 Aligned_cols=86 Identities=13% Similarity=0.191 Sum_probs=54.3
Q ss_pred EEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCC-cccCcEEEE
Q 002740 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGK-RVLSDAWAL 184 (885)
Q Consensus 106 ~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~-~~~ndv~~~ 184 (885)
+++++.+|..... .......+.+||+.+.+ |..+..............++.+++ +|-++.-.... ...=++|++
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~--f~~i~~P~~~~~~~~~~~L~~~~G-~L~~v~~~~~~~~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEK--FRFIKLPEDPYSSDCSSTLIEYKG-KLALVSYNDQGEPDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCce--EEEEEeeeeeccccCccEEEEeCC-eEEEEEecCCCCcceEEEEEe
Confidence 4678888887765 33455779999999966 766643223445556667777776 55554433322 234578998
Q ss_pred e-CCCCCeeEEEcCC
Q 002740 185 D-TAQKPYVWQRLNP 198 (885)
Q Consensus 185 d-~~t~~~~W~~l~~ 198 (885)
+ .++. +|.+...
T Consensus 77 eD~~k~--~Wsk~~~ 89 (129)
T PF08268_consen 77 EDYEKQ--EWSKKHI 89 (129)
T ss_pred eccccc--eEEEEEE
Confidence 4 5566 8988754
No 174
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.33 E-value=1.3e+02 Score=34.46 Aligned_cols=186 Identities=17% Similarity=0.175 Sum_probs=89.2
Q ss_pred EEEEECCCCcEEEecCCCCCCcccCccEEEEEC-CEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecC-CCCC---
Q 002740 77 VHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVG-TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQG-QGPG--- 151 (885)
Q Consensus 77 v~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~-~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~-~~p~--- 151 (885)
++.=+-...+|++++.....|.. .+....++ +.+++.|..+ .+++-+-.. -+|+.+.... ..+.
T Consensus 158 il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~G-------~v~~S~D~G--~tW~~~~~~t~~~~l~~~ 226 (398)
T PLN00033 158 LLHTSDGGETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDEG-------AIYVTSNAG--RNWKAAVEETVSATLNRT 226 (398)
T ss_pred EEEEcCCCCCceECccccCCCCC--ceEEEEECCCceEEEeccc-------eEEEECCCC--CCceEccccccccccccc
Confidence 33333345789988754333333 23344443 4677777432 144433222 3488762110 0011
Q ss_pred -----------CccccEEEEECCcEEEEEecCCCCcccCcEEE-EeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEE
Q 002740 152 -----------PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWA-LDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMF 219 (885)
Q Consensus 152 -----------~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~-~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l 219 (885)
.-..+.+....++.++++|-. ..+++ .|.... .|+.+... .++...++....++.+
T Consensus 227 ~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~------G~~~~s~d~G~~--~W~~~~~~----~~~~l~~v~~~~dg~l 294 (398)
T PLN00033 227 VSSGISGASYYTGTFSTVNRSPDGDYVAVSSR------GNFYLTWEPGQP--YWQPHNRA----SARRIQNMGWRADGGL 294 (398)
T ss_pred ccccccccceeccceeeEEEcCCCCEEEEECC------ccEEEecCCCCc--ceEEecCC----CccceeeeeEcCCCCE
Confidence 111122333344455555532 13444 333332 48888643 4444444445577788
Q ss_pred EEEccCCCCCCcccceEEEEcCCCCee---EEEeCCCCCCCcccee-EEEEE-CCEEEEEcccCCCCCCccCCCcEEEEE
Q 002740 220 LLCGGRDASGAPLADAYGLLMHRNGQW---EWTLAPGVAPSPRYQH-AAVFV-GARLHVTGGALRGGRAIEGEAAVAVLD 294 (885)
Q Consensus 220 ~v~GG~~~~~~~l~dv~~l~~~~~~~W---~w~~~~~~~P~~R~~h-s~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD 294 (885)
++.|.. ..++..+.. ...| +|.+..-. ..++.. ++.+. ++.+++.|.. .-++.-.
T Consensus 295 ~l~g~~-------G~l~~S~d~-G~~~~~~~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~----------G~v~~s~ 354 (398)
T PLN00033 295 WLLTRG-------GGLYVSKGT-GLTEEDFDFEEADIK--SRGFGILDVGYRSKKEAWAAGGS----------GILLRST 354 (398)
T ss_pred EEEeCC-------ceEEEecCC-CCcccccceeecccC--CCCcceEEEEEcCCCcEEEEECC----------CcEEEeC
Confidence 887743 123322222 2234 45554321 223322 33344 5688888863 2366666
Q ss_pred CCCCeEEEccC
Q 002740 295 TAAGVWLDRNG 305 (885)
Q Consensus 295 ~~t~~W~~v~~ 305 (885)
...++|.....
T Consensus 355 D~G~tW~~~~~ 365 (398)
T PLN00033 355 DGGKSWKRDKG 365 (398)
T ss_pred CCCcceeEccc
Confidence 67789999864
No 175
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=77.67 E-value=5.8 Score=45.42 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCeEEEEeccccccceEEecCCeE
Q 002740 768 DRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQL 801 (885)
Q Consensus 768 ~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~ 801 (885)
..+++.+-++++++++=||.-.-+.+..-.+.++
T Consensus 322 ~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 322 EGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 3699999999999999999866555544455544
No 176
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=75.41 E-value=1.1e+02 Score=32.19 Aligned_cols=121 Identities=20% Similarity=0.314 Sum_probs=59.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
+.+++||+.+++-...-.... .++ +++.. +..+|+.++. .+.++.||+.+.+ ...... ....+
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~------~~~v~~~d~~~~~--~~~~~~--~~~~~ 75 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD------SDTIQVIDLATGE--VIGTLP--SGPDP 75 (300)
T ss_pred CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC------CCeEEEEECCCCc--EEEecc--CCCCc
Confidence 578889988776433322111 122 22222 3467776652 2458899988743 332211 11111
Q ss_pred ccccEEEEEC-CcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccC
Q 002740 153 RYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 225 (885)
Q Consensus 153 R~~h~~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~ 225 (885)
..++... ++.+|+.++.+ +.+..||+.+.. ....+.. ....+.+....++.+++++..
T Consensus 76 ---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~-~~~~~~~------~~~~~~~~~~~dg~~l~~~~~ 134 (300)
T TIGR03866 76 ---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK-VLAEIPV------GVEPEGMAVSPDGKIVVNTSE 134 (300)
T ss_pred ---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe-EEeEeeC------CCCcceEEECCCCCEEEEEec
Confidence 2333333 34566654432 368889998751 1112211 111234445567777776653
No 177
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.73 E-value=1.7e+02 Score=33.72 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=50.4
Q ss_pred EEEEECCCCcEEEecCCCCCCccc--CccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCcc
Q 002740 77 VHLYDVLTRKWTRIRPAGEPPSPR--AAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 77 v~~yD~~t~~W~~l~~~~~~P~~R--~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~ 154 (885)
|..=+-.-.+|++..........+ ...++...++..|++|-.+ .+|-..+.--+|.++.....+|..
T Consensus 112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~G---------~il~T~DgG~tW~~~~~~~~~p~~-- 180 (398)
T PLN00033 112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKPA---------ILLHTSDGGETWERIPLSPKLPGE-- 180 (398)
T ss_pred EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCce---------EEEEEcCCCCCceECccccCCCCC--
Confidence 333333456899854211111112 2344555677888886431 334343332459988543333333
Q ss_pred ccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEc
Q 002740 155 GHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (885)
Q Consensus 155 ~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l 196 (885)
.+.....+++..++.|.. ..+++-+-... +|+.+
T Consensus 181 ~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~--tW~~~ 214 (398)
T PLN00033 181 PVLIKATGPKSAEMVTDE------GAIYVTSNAGR--NWKAA 214 (398)
T ss_pred ceEEEEECCCceEEEecc------ceEEEECCCCC--CceEc
Confidence 233444555566666632 23666544444 79887
No 178
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=73.42 E-value=6.3 Score=39.20 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=30.4
Q ss_pred eEEEecccc--CCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 616 DYLFLGDYV--DRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyv--DRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.++.-||+- -|=+...+=+.+|-+| |+.=+++|||||...
T Consensus 46 iVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~K~m~rGNHDYWw 87 (230)
T COG1768 46 IVLLPGDISWAMRLEEAEEDLRFIGDL----PGTKYMIRGNHDYWW 87 (230)
T ss_pred EEEecccchhheechhhhhhhhhhhcC----CCcEEEEecCCcccc
Confidence 466689985 4666666667777665 788999999999864
No 179
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=72.58 E-value=1.2e+02 Score=30.98 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=76.6
Q ss_pred EEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeec-CCCCCCccccEEEEEC-CcEEEEEecCCCCcccCcE
Q 002740 104 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ-GQGPGPRYGHVMDLVS-QRYLVSVSGNDGKRVLSDA 181 (885)
Q Consensus 104 a~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~-~~~p~~R~~h~~~~~~-~~~lyv~GG~~~~~~~ndv 181 (885)
|++...+.+|+|-|. .+|+++.......-..+... +..|. ... ++.... ++.+|+|-|. ..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~ID-Aa~~~~~~~~~yfFkg~-------~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVD-AAFERPDTGKIYFFKGD-------KY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-Ccc-EEEEECCCCEEEEECCC-------EE
Confidence 445556899999773 27888764211111122110 11221 222 233333 3689998774 57
Q ss_pred EEEeCCCCCeeEE---EcCCCCCCCCccccceEEEec-CCEEEEEccCCCCCCcccceEEEEcCCCCee----------E
Q 002740 182 WALDTAQKPYVWQ---RLNPEGDRPSARMYATASARS-DGMFLLCGGRDASGAPLADAYGLLMHRNGQW----------E 247 (885)
Q Consensus 182 ~~~d~~t~~~~W~---~l~~~g~~P~~r~~hsa~~~~-~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W----------~ 247 (885)
|+|+..+. .+. .+...+-++.+..-.++.... ++++|+|.| +..|+|+.... +. .
T Consensus 74 w~~~~~~~--~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y~ry~~~~~-~v~~~yP~~i~~~ 142 (194)
T cd00094 74 WVYTGKNL--EPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKYWRYDEKTQ-KMDPGYPKLIETD 142 (194)
T ss_pred EEEcCccc--ccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEEEEEeCCCc-cccCCCCcchhhc
Confidence 88886642 221 111112212122234454444 789999987 34667765432 00 1
Q ss_pred EEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCe
Q 002740 248 WTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 248 w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
|. +. |. .. .++... ++++|+|-| +.+|.||..+.+
T Consensus 143 w~---g~-p~-~i-daa~~~~~~~~yfF~g-----------~~y~~~d~~~~~ 178 (194)
T cd00094 143 FP---GV-PD-KV-DAAFRWLDGYYYFFKG-----------DQYWRFDPRSKE 178 (194)
T ss_pred CC---Cc-CC-Cc-ceeEEeCCCcEEEEEC-----------CEEEEEeCccce
Confidence 21 11 11 12 233333 488999977 358999998776
No 180
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=72.06 E-value=7.4 Score=42.58 Aligned_cols=46 Identities=30% Similarity=0.396 Sum_probs=29.7
Q ss_pred eEEEeccccCCCCChH--H------HHHHHHHHHhcCCC-cEEEeccCCcccchh
Q 002740 616 DYLFLGDYVDRGQHSL--E------TITLLLALKIEYPE-NVHLIRGNHEAADIN 661 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s~--e------vl~ll~~lk~~~p~-~v~llrGNHE~~~~~ 661 (885)
-+|+.||+++.+.... + .-.+...++..+|. .|+.+.||||....+
T Consensus 71 fii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~ 125 (296)
T cd00842 71 FILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVN 125 (296)
T ss_pred EEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCccc
Confidence 5888999998775421 1 22233344544543 699999999986543
No 181
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.99 E-value=15 Score=35.36 Aligned_cols=104 Identities=28% Similarity=0.359 Sum_probs=66.9
Q ss_pred eEEEecCCC--CHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccch
Q 002740 583 VKVFGDLHG--QFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADI 660 (885)
Q Consensus 583 i~vvGDiHG--~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~ 660 (885)
+.++||+|= ...+|-.=|++.-.|..- ..++++|++. +-|++.+|..+. ..++++||--|..
T Consensus 3 vL~lgD~HiP~Ra~~Lp~KFkklLvPgki-----~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~-- 66 (183)
T KOG3325|consen 3 VLVLGDLHIPHRANDLPAKFKKLLVPGKI-----QHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN-- 66 (183)
T ss_pred EEEeccccCCccccccCHHHHhccCCCce-----eEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc--
Confidence 578999985 334555555555455432 1789999965 779999998875 6899999976653
Q ss_pred hhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEEeCeEEEecCCCCCCCcCHHHhhcccCCccc
Q 002740 661 NALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALIEKKIICMHGGIGRSIHSVEQIEKLERPITM 729 (885)
Q Consensus 661 ~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i~~~il~vHgGi~~~~~~~~~i~~~~rp~~~ 729 (885)
.+|.+.. ...+-.-||=||||-.---..+.+.+.-+.|-+++
T Consensus 67 -----------~~yP~~k----------------vvtvGqfkIG~chGhqViP~gd~~sL~~LaRqldv 108 (183)
T KOG3325|consen 67 -----------LKYPENK----------------VVTVGQFKIGLCHGHQVIPWGDPESLALLARQLDV 108 (183)
T ss_pred -----------ccCCccc----------------eEEeccEEEEeecCcEeecCCCHHHHHHHHHhcCC
Confidence 2332210 00111237899999754334677777777776653
No 182
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=70.08 E-value=5.1 Score=45.26 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=33.7
Q ss_pred eEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 616 DYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
.+-.+||+-||||++--++.-|..+ ..+-+-.||||...
T Consensus 193 hLHiVGDIyDRGP~pd~Imd~L~~y-----hsvDiQWGNHDilW 231 (648)
T COG3855 193 HLHIVGDIYDRGPYPDKIMDTLINY-----HSVDIQWGNHDILW 231 (648)
T ss_pred heeeecccccCCCCchHHHHHHhhc-----ccccccccCcceEE
Confidence 5678999999999999999999887 47888899999654
No 183
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=69.93 E-value=2.2e+02 Score=34.09 Aligned_cols=132 Identities=14% Similarity=0.105 Sum_probs=70.4
Q ss_pred EEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC-----ccccEEEEECCcEEEEEecCCCCccc
Q 002740 104 AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP-----RYGHVMDLVSQRYLVSVSGNDGKRVL 178 (885)
Q Consensus 104 a~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~-----R~~h~~~~~~~~~lyv~GG~~~~~~~ 178 (885)
+-+++++.||+.... ..++++|..+.+..|+.-........+ ......++.+ +++|+ |..+
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v-~t~d----- 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFF-GTLD----- 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEE-EcCC-----
Confidence 345678999996542 249999999887889865211100000 1111233334 46775 3322
Q ss_pred CcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCC-CeeEEEeCC
Q 002740 179 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN-GQWEWTLAP 252 (885)
Q Consensus 179 ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~-~~W~w~~~~ 252 (885)
..++++|.++....|+.-... .......-++-++.++++|+.... .+......++.|+..+. -.|++...+
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~--~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGD--YKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred CEEEEEECCCCCEEeeccccc--ccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEeccCcC
Confidence 369999999998889865421 111111112234457777764321 11112345778877643 245555543
No 184
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=69.61 E-value=60 Score=36.82 Aligned_cols=91 Identities=23% Similarity=0.302 Sum_probs=56.5
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 73 ~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
.+|++|++|-.-+.--+++..+ |-.|. +++-..++.+|+.-=. ..+-+++.|+++.+ --++ .|.+..|
T Consensus 404 ~~N~vYilDe~lnvvGkltGl~--~gERI-YAvRf~gdv~yiVTfr-----qtDPlfviDlsNPe--nPkv--lGeLKIP 471 (603)
T COG4880 404 PVNAVYILDENLNVVGKLTGLA--PGERI-YAVRFVGDVLYIVTFR-----QTDPLFVIDLSNPE--NPKV--LGELKIP 471 (603)
T ss_pred ccceeEEEcCCCcEEEEEeccC--CCceE-EEEEEeCceEEEEEEe-----ccCceEEEEcCCCC--CCce--eEEEecC
Confidence 6899999999888777776543 23343 4566668888886532 44669999998743 1111 2444444
Q ss_pred ccccEEEEECCcEEEEEecCCCC
Q 002740 153 RYGHVMDLVSQRYLVSVSGNDGK 175 (885)
Q Consensus 153 R~~h~~~~~~~~~lyv~GG~~~~ 175 (885)
-+..-+.-++++.++-+|-.++.
T Consensus 472 GfS~YLHpigen~~lGvG~~~g~ 494 (603)
T COG4880 472 GFSEYLHPIGENRLLGVGAYQGG 494 (603)
T ss_pred CchhhccccCCCcEEEeecccCC
Confidence 44444445566667666665543
No 185
>PLN00181 protein SPA1-RELATED; Provisional
Probab=69.50 E-value=3e+02 Score=34.68 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=15.0
Q ss_pred CcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 163 QRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 163 ~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
++.+++.||.++ .+.+||+.+.
T Consensus 587 ~~~~L~Sgs~Dg-----~v~iWd~~~~ 608 (793)
T PLN00181 587 DPTLLASGSDDG-----SVKLWSINQG 608 (793)
T ss_pred CCCEEEEEcCCC-----EEEEEECCCC
Confidence 446777787765 4777888654
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=69.44 E-value=1.6e+02 Score=31.21 Aligned_cols=159 Identities=20% Similarity=0.280 Sum_probs=79.1
Q ss_pred CCcEEEecCCCC--CCcccCccEEEE-ECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEE
Q 002740 84 TRKWTRIRPAGE--PPSPRAAHAAAA-VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDL 160 (885)
Q Consensus 84 t~~W~~l~~~~~--~P~~R~~ha~~~-~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~ 160 (885)
...|+..+++.. .+.|-....... -.|.|++.||-+ .+|+.|+.+.+ -++.. --..-|-|+++.
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-------~~y~~dlE~G~--i~r~~----rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-------VIYQVDLEDGR--IQREY----RGHTDYVHSVVG 164 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-------EEEEEEecCCE--EEEEE----cCCcceeeeeee
Confidence 345776665532 344433322222 368999999842 38999999865 33331 123445666655
Q ss_pred ECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEE-cCCCCCCCCcc--ccc-eEEEecCCEEEEEccCCCCCCcccceE
Q 002740 161 VSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQR-LNPEGDRPSAR--MYA-TASARSDGMFLLCGGRDASGAPLADAY 236 (885)
Q Consensus 161 ~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~-l~~~g~~P~~r--~~h-sa~~~~~~~l~v~GG~~~~~~~l~dv~ 236 (885)
-...-=++-|+.++ .+-++|+.|. +-.+ +.+-.....-| .+. -++...+....++||. .-..+|
T Consensus 165 R~~~~qilsG~EDG-----tvRvWd~kt~--k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-----p~lslw 232 (325)
T KOG0649|consen 165 RNANGQILSGAEDG-----TVRVWDTKTQ--KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-----PKLSLW 232 (325)
T ss_pred cccCcceeecCCCc-----cEEEEecccc--ceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-----CceeEE
Confidence 33333344677766 3666777765 3322 22221111111 111 1333455567777773 233466
Q ss_pred EEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEc
Q 002740 237 GLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTG 275 (885)
Q Consensus 237 ~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~G 275 (885)
.+...+. + .+ .|.|-..|-+.+.++.+++.|
T Consensus 233 hLrsse~---t--~v---fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 233 HLRSSES---T--CV---FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred eccCCCc---e--EE---EecccceeEeeeecceEEEec
Confidence 6655432 1 11 133333444555566555555
No 187
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=68.87 E-value=7.1 Score=51.25 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=38.9
Q ss_pred CeEEEecCCCCHHHH---HHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-----HHHHHHHHHHHhcCCCcEEEecc
Q 002740 582 PVKVFGDLHGQFGDL---MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRG 653 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L---~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s-----~evl~ll~~lk~~~p~~v~llrG 653 (885)
.|+.+.|+||.+..+ ..+++...-...+ .-++..||+++..+.+ ..++.+|-++ +--.+..|
T Consensus 662 ~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~-----~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~l-----g~d~~~~G 731 (1163)
T PRK09419 662 TILHTNDFHGHLDGAAKRVTKIKEVKEENPN-----TILVDAGDVYQGSLYSNLLKGLPVLKMMKEM-----GYDASTFG 731 (1163)
T ss_pred EEEEEeecccCCCCHHHHHHHHHHHHhhCCC-----eEEEecCCCCCCcchhhhcCChHHHHHHhCc-----CCCEEEec
Confidence 488999999986433 3444443211111 1233489999877644 2344544444 23356899
Q ss_pred CCcc
Q 002740 654 NHEA 657 (885)
Q Consensus 654 NHE~ 657 (885)
|||.
T Consensus 732 NHEf 735 (1163)
T PRK09419 732 NHEF 735 (1163)
T ss_pred cccc
Confidence 9996
No 188
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=68.56 E-value=2e+02 Score=32.10 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=93.5
Q ss_pred CcEEE--EECCCCcEEEecCCCCCCcccCccEEEEE---CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCC
Q 002740 75 NSVHL--YDVLTRKWTRIRPAGEPPSPRAAHAAAAV---GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG 149 (885)
Q Consensus 75 ~dv~~--yD~~t~~W~~l~~~~~~P~~R~~ha~~~~---~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~ 149 (885)
..|++ ||..+.+++.+...... ...+..++ ++.||+..... .....+..|....++.+...+.. .
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~----~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~---~ 82 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEG----ENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNS---V 82 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEES----SSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEE---E
T ss_pred CcEEEEEEcCCCCCceEeeeecCC----CCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeee---e
Confidence 44544 45588999887642211 12222222 56888876543 23345777777765344655532 2
Q ss_pred C-CCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEc---------CCCCCCCCccccceEEEecCC-
Q 002740 150 P-GPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL---------NPEGDRPSARMYATASARSDG- 217 (885)
Q Consensus 150 p-~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l---------~~~g~~P~~r~~hsa~~~~~~- 217 (885)
+ ....-+.+++. +++++|+.--. -..+.+|++..+. .-... .+..........|.+....++
T Consensus 83 ~~~g~~p~~i~~~~~g~~l~vany~-----~g~v~v~~l~~~g-~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 83 PSGGSSPCHIAVDPDGRFLYVANYG-----GGSVSVFPLDDDG-SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EESSSCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTS-EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred ccCCCCcEEEEEecCCCEEEEEEcc-----CCeEEEEEccCCc-ccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 2 22222223232 44566664322 2357777776531 11111 011011123335777777665
Q ss_pred EEEEEccCCCCCCcccceEEEEcCCCC-eeEE---EeCCCCCCCccceeEEEEE--CCEEEEEcccCCCCCCccCCCcEE
Q 002740 218 MFLLCGGRDASGAPLADAYGLLMHRNG-QWEW---TLAPGVAPSPRYQHAAVFV--GARLHVTGGALRGGRAIEGEAAVA 291 (885)
Q Consensus 218 ~l~v~GG~~~~~~~l~dv~~l~~~~~~-~W~w---~~~~~~~P~~R~~hs~~~~--~~~i~V~GG~~~~~~~~~~~~~v~ 291 (885)
.+|+.. . -.+.++.|+..... ..+. ..++.- ..|| | +++. +..+||..-. .+.|.
T Consensus 157 ~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPR--h-~~f~pdg~~~Yv~~e~---------s~~v~ 217 (345)
T PF10282_consen 157 FVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPR--H-LAFSPDGKYAYVVNEL---------SNTVS 217 (345)
T ss_dssp EEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEE--E-EEE-TTSSEEEEEETT---------TTEEE
T ss_pred EEEEEe-c-----CCCEEEEEEEeCCCceEEEeeccccccC-CCCc--E-EEEcCCcCEEEEecCC---------CCcEE
Confidence 455532 1 14567777776542 2322 222111 1233 2 2233 4689998653 23455
Q ss_pred EEEC--CCCeEEEccCCc
Q 002740 292 VLDT--AAGVWLDRNGLV 307 (885)
Q Consensus 292 ~yD~--~t~~W~~v~~~~ 307 (885)
+|+. .+..|+.+....
T Consensus 218 v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp EEEEETTTTEEEEEEEEE
T ss_pred EEeecccCCceeEEEEee
Confidence 5544 477777766554
No 189
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=68.54 E-value=11 Score=40.94 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHc-CCeEEEEecccc
Q 002740 766 GPDRVSDFCKRN-KLQLIIRAHECV 789 (885)
Q Consensus 766 g~~~~~~fl~~~-~l~~iiR~H~~~ 789 (885)
|.+.-.+++++. ++++||-||+-+
T Consensus 193 G~~~d~~la~~~~giD~IiggH~H~ 217 (281)
T cd07409 193 GYEVDKEIARKVPGVDVIVGGHSHT 217 (281)
T ss_pred CchhHHHHHHcCCCCcEEEeCCcCc
Confidence 444444566664 899999998655
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=67.72 E-value=2e+02 Score=31.66 Aligned_cols=143 Identities=10% Similarity=0.016 Sum_probs=65.0
Q ss_pred CcEEEEECCC-CcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCC
Q 002740 75 NSVHLYDVLT-RKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 75 ~dv~~yD~~t-~~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~ 151 (885)
+.++.||+.+ .+++.+.... .....+.++.- ++.+|+.+.. .+.+..|+++.+ .++..+... ..+.
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~~~-g~l~~~~~~-~~~~ 80 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIADD-GALTFAAES-PLPG 80 (330)
T ss_pred CCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEEECC------CCcEEEEEECCC-CceEEeeee-cCCC
Confidence 5577888864 5676654332 11122223332 4567775431 245777887632 235444221 1111
Q ss_pred CccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCC-EEEEEccCCCCC
Q 002740 152 PRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDG-MFLLCGGRDASG 229 (885)
Q Consensus 152 ~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~-~l~v~GG~~~~~ 229 (885)
.-+.++.. +++.+|+..-. -+.+.+|++.++......+... +.....|.+....++ .+|+..-
T Consensus 81 --~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~---~~~~~~~~~~~~p~g~~l~v~~~----- 145 (330)
T PRK11028 81 --SPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQII---EGLEGCHSANIDPDNRTLWVPCL----- 145 (330)
T ss_pred --CceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeec---cCCCcccEeEeCCCCCEEEEeeC-----
Confidence 11233333 34467765422 2457777775431111111111 122224565555565 4555332
Q ss_pred CcccceEEEEcCCCC
Q 002740 230 APLADAYGLLMHRNG 244 (885)
Q Consensus 230 ~~l~dv~~l~~~~~~ 244 (885)
..+.++.|+...++
T Consensus 146 -~~~~v~v~d~~~~g 159 (330)
T PRK11028 146 -KEDRIRLFTLSDDG 159 (330)
T ss_pred -CCCEEEEEEECCCC
Confidence 12346667665443
No 191
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=66.44 E-value=2.1e+02 Score=31.54 Aligned_cols=185 Identities=17% Similarity=0.248 Sum_probs=81.3
Q ss_pred EEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccc
Q 002740 77 VHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYG 155 (885)
Q Consensus 77 v~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~ 155 (885)
++.-.-...+|++++.... .|-..+....+ ++.++++|..+ .+| -..+.--+|+.+.... .-.-
T Consensus 83 ll~T~DgG~tW~~v~l~~~--lpgs~~~i~~l~~~~~~l~~~~G-------~iy--~T~DgG~tW~~~~~~~----~gs~ 147 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSK--LPGSPFGITALGDGSAELAGDRG-------AIY--RTTDGGKTWQAVVSET----SGSI 147 (302)
T ss_dssp EEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT---------EE--EESSTTSSEEEEE-S--------E
T ss_pred EEEecCCCCCcEEeecCCC--CCCCeeEEEEcCCCcEEEEcCCC-------cEE--EeCCCCCCeeEcccCC----ccee
Confidence 4444445678999874322 33344444444 55777776531 133 3333223598874311 1222
Q ss_pred cEEEEECCcEEEEEecCCCCcccCcEE-EEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccc
Q 002740 156 HVMDLVSQRYLVSVSGNDGKRVLSDAW-ALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLAD 234 (885)
Q Consensus 156 h~~~~~~~~~lyv~GG~~~~~~~ndv~-~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~d 234 (885)
..+....++.+++.+.. + .++ ..|+... .|+..... ..|+-.++....++.+++.. +.+.
T Consensus 148 ~~~~r~~dG~~vavs~~-G-----~~~~s~~~G~~--~w~~~~r~----~~~riq~~gf~~~~~lw~~~-~Gg~------ 208 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSR-G-----NFYSSWDPGQT--TWQPHNRN----SSRRIQSMGFSPDGNLWMLA-RGGQ------ 208 (302)
T ss_dssp EEEEE-TTS-EEEEETT-S-----SEEEEE-TT-S--S-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTE------
T ss_pred EeEEECCCCcEEEEECc-c-----cEEEEecCCCc--cceEEccC----ccceehhceecCCCCEEEEe-CCcE------
Confidence 23334466676666532 2 344 3577665 68887543 66777777777888888754 2221
Q ss_pred eEEEEcCCCCeeEEEeCCCCCCCcccee-EEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCC
Q 002740 235 AYGLLMHRNGQWEWTLAPGVAPSPRYQH-AAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 235 v~~l~~~~~~~W~w~~~~~~~P~~R~~h-s~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
++.-+ ..+..=+|.+.........++. .+++- ++.+++.||. ..+++-.-.-++|.+....
T Consensus 209 ~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~----------G~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 209 IQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS----------GTLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp EEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST----------T-EEEESSTTSS-EE-GGG
T ss_pred EEEcc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC----------ccEEEeCCCCccceECccc
Confidence 22222 1111125555332222334433 33333 5789999983 3466666667899998754
No 192
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=66.09 E-value=78 Score=36.21 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=60.6
Q ss_pred EEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCe
Q 002740 166 LVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQ 245 (885)
Q Consensus 166 lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~ 245 (885)
.++++|... =+|.||+++. +-+++.+....+ .+..+...+..++.++++-|..+. ++.+-..+.
T Consensus 272 ~i~~s~rrk-----y~ysyDle~a--k~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~------I~lLhakT~-- 335 (514)
T KOG2055|consen 272 VIFTSGRRK-----YLYSYDLETA--KVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGH------IHLLHAKTK-- 335 (514)
T ss_pred EEEecccce-----EEEEeecccc--ccccccCCCCcc-cchhheeEecCCCCeEEEcccCce------EEeehhhhh--
Confidence 555666432 3789999998 788887665554 455566666677777777775332 344433333
Q ss_pred eEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCC
Q 002740 246 WEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 246 W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~ 298 (885)
+|+..-.+ .++..-.+... +..|++.||+ ..||++|+...
T Consensus 336 -eli~s~Ki--eG~v~~~~fsSdsk~l~~~~~~----------GeV~v~nl~~~ 376 (514)
T KOG2055|consen 336 -ELITSFKI--EGVVSDFTFSSDSKELLASGGT----------GEVYVWNLRQN 376 (514)
T ss_pred -hhhheeee--ccEEeeEEEecCCcEEEEEcCC----------ceEEEEecCCc
Confidence 33332111 22222222222 4567788873 35999999887
No 193
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=63.60 E-value=2.6e+02 Score=31.69 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=71.7
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..++++|+.+.+ ...+. ..+.... +.... ++..+++....++ ..++|.+|+.+. ....+......
T Consensus 214 ~~i~v~d~~~g~--~~~~~---~~~~~~~--~~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~--~~~~l~~~~~~-- 279 (417)
T TIGR02800 214 PEIYVQDLATGQ--REKVA---SFPGMNG--APAFSPDGSKLAVSLSKDG---NPDIYVMDLDGK--QLTRLTNGPGI-- 279 (417)
T ss_pred cEEEEEECCCCC--EEEee---cCCCCcc--ceEECCCCCEEEEEECCCC---CccEEEEECCCC--CEEECCCCCCC--
Confidence 569999998754 33332 1121111 22233 3334554333222 257999999887 56666433111
Q ss_pred ccccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCC
Q 002740 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGR 282 (885)
Q Consensus 205 ~r~~hsa~~~~~~~-l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~ 282 (885)
........++. |++.....+ ..++|.++.... .+..+...+ .+....++. +++.+++..... +
T Consensus 280 ---~~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~-~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~-~- 344 (417)
T TIGR02800 280 ---DTEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGG-EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG-G- 344 (417)
T ss_pred ---CCCEEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccCeEECCCCCEEEEEEccC-C-
Confidence 11112234554 444333222 236888887644 333222211 122222332 455555554322 1
Q ss_pred CccCCCcEEEEECCCCeEEEcc
Q 002740 283 AIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|+.+..+..+.
T Consensus 345 ----~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 345 ----GFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ----ceEEEEEeCCCCCeEEcc
Confidence 246999999987776665
No 194
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=62.52 E-value=12 Score=38.61 Aligned_cols=72 Identities=11% Similarity=0.173 Sum_probs=37.5
Q ss_pred eEEEecCCCC-----HHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCCCChH-------------HHHHHHHHHHhc
Q 002740 583 VKVFGDLHGQ-----FGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRGQHSL-------------ETITLLLALKIE 643 (885)
Q Consensus 583 i~vvGDiHG~-----~~~L~~il~~~g-~~~~~~~~~~~~~vfLGDyvDRG~~s~-------------evl~ll~~lk~~ 643 (885)
|++++|+|=. ++.|.++|..+. ..... .+|++|+++|.-.... +-+..+.++...
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~------~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPD------VLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLES 74 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTEC------EEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCc------EEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhh
Confidence 5677777755 566667776655 22222 7999999999633221 111122222111
Q ss_pred C--CCcEEEeccCCcccch
Q 002740 644 Y--PENVHLIRGNHEAADI 660 (885)
Q Consensus 644 ~--p~~v~llrGNHE~~~~ 660 (885)
. --+|+++.|+||....
T Consensus 75 i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 75 ILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp CHCCSEEEEE--TTCTT-S
T ss_pred cccccEEEEeCCCcccccc
Confidence 1 2589999999998665
No 195
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=62.38 E-value=3e+02 Score=31.89 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=36.9
Q ss_pred ECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCC
Q 002740 108 VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA 187 (885)
Q Consensus 108 ~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~ 187 (885)
.++.+++.|+-+ . -+-.+|+++.. .+....+-.-.-|++..+ -.++.+++-||+|+. +-.||+.
T Consensus 121 ~d~t~l~s~sDd--~----v~k~~d~s~a~---v~~~l~~htDYVR~g~~~--~~~~hivvtGsYDg~-----vrl~DtR 184 (487)
T KOG0310|consen 121 QDNTMLVSGSDD--K----VVKYWDLSTAY---VQAELSGHTDYVRCGDIS--PANDHIVVTGSYDGK-----VRLWDTR 184 (487)
T ss_pred cCCeEEEecCCC--c----eEEEEEcCCcE---EEEEecCCcceeEeeccc--cCCCeEEEecCCCce-----EEEEEec
Confidence 478899988732 1 14445555532 233233433344444222 234589999999884 5556666
Q ss_pred CC
Q 002740 188 QK 189 (885)
Q Consensus 188 t~ 189 (885)
+.
T Consensus 185 ~~ 186 (487)
T KOG0310|consen 185 SL 186 (487)
T ss_pred cC
Confidence 54
No 196
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=62.24 E-value=2.5e+02 Score=30.96 Aligned_cols=242 Identities=16% Similarity=0.202 Sum_probs=101.0
Q ss_pred ceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCC
Q 002740 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPP 97 (885)
Q Consensus 18 ~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P 97 (885)
..|+... +|....-..+.++ +.++-|++|-. +.++.=+---.+|+.+......+
T Consensus 6 ~~W~~v~-l~t~~~l~dV~F~-----d~~~G~~VG~~--------------------g~il~T~DGG~tW~~~~~~~~~~ 59 (302)
T PF14870_consen 6 NSWQQVS-LPTDKPLLDVAFV-----DPNHGWAVGAY--------------------GTILKTTDGGKTWQPVSLDLDNP 59 (302)
T ss_dssp --EEEEE--S-SS-EEEEEES-----SSS-EEEEETT--------------------TEEEEESSTTSS-EE-----S--
T ss_pred CCcEEee-cCCCCceEEEEEe-----cCCEEEEEecC--------------------CEEEEECCCCccccccccCCCcc
Confidence 4577664 3444444455555 25688888732 33443233346899886443222
Q ss_pred cccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcc
Q 002740 98 SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRV 177 (885)
Q Consensus 98 ~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~ 177 (885)
.....+++...++..||.|-.+ + +|-..+.--+|.++......|. ..+.+..++++..+++|..
T Consensus 60 ~~~~l~~I~f~~~~g~ivG~~g--------~-ll~T~DgG~tW~~v~l~~~lpg--s~~~i~~l~~~~~~l~~~~----- 123 (302)
T PF14870_consen 60 FDYHLNSISFDGNEGWIVGEPG--------L-LLHTTDGGKTWERVPLSSKLPG--SPFGITALGDGSAELAGDR----- 123 (302)
T ss_dssp ---EEEEEEEETTEEEEEEETT--------E-EEEESSTTSS-EE----TT-SS---EEEEEEEETTEEEEEETT-----
T ss_pred ceeeEEEEEecCCceEEEcCCc--------e-EEEecCCCCCcEEeecCCCCCC--CeeEEEEcCCCcEEEEcCC-----
Confidence 1222334555678888887421 2 3333333345999854334443 3345556666677776643
Q ss_pred cCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEE-EcCCCCeeEEEeCCCCCC
Q 002740 178 LSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGL-LMHRNGQWEWTLAPGVAP 256 (885)
Q Consensus 178 ~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l-~~~~~~~W~w~~~~~~~P 256 (885)
..+|+-.-.-. +|+.+... .......+....++.+++++.. ..++.- +.... .|....-.
T Consensus 124 -G~iy~T~DgG~--tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~-------G~~~~s~~~G~~---~w~~~~r~-- 184 (302)
T PF14870_consen 124 -GAIYRTTDGGK--TWQAVVSE----TSGSINDITRSSDGRYVAVSSR-------GNFYSSWDPGQT---TWQPHNRN-- 184 (302)
T ss_dssp ---EEEESSTTS--SEEEEE-S--------EEEEEE-TTS-EEEEETT-------SSEEEEE-TT-S---S-EEEE----
T ss_pred -CcEEEeCCCCC--CeeEcccC----CcceeEeEEECCCCcEEEEECc-------ccEEEEecCCCc---cceEEccC--
Confidence 34555443333 89998653 2223333445578887777753 234432 22222 34444222
Q ss_pred CccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEE--CCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEE
Q 002740 257 SPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLD--TAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHAS 333 (885)
Q Consensus 257 ~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD--~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~ 333 (885)
..|.--++.+. ++.++++. + ++ .+..-+ ....+|.+.... . ....++.--
T Consensus 185 ~~~riq~~gf~~~~~lw~~~-~--Gg-------~~~~s~~~~~~~~w~~~~~~-~----------------~~~~~~~ld 237 (302)
T PF14870_consen 185 SSRRIQSMGFSPDGNLWMLA-R--GG-------QIQFSDDPDDGETWSEPIIP-I----------------KTNGYGILD 237 (302)
T ss_dssp SSS-EEEEEE-TTS-EEEEE-T--TT-------EEEEEE-TTEEEEE---B-T-T----------------SS--S-EEE
T ss_pred ccceehhceecCCCCEEEEe-C--Cc-------EEEEccCCCCccccccccCC-c----------------ccCceeeEE
Confidence 33443444444 66777764 1 11 244444 344678773211 1 113343343
Q ss_pred EEE--CCEEEEEcCCC
Q 002740 334 ASI--GVRIYIYGGLK 347 (885)
Q Consensus 334 ~~~--~~~IyI~GG~~ 347 (885)
..+ ++.+++.||..
T Consensus 238 ~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 238 LAYRPPNEIWAVGGSG 253 (302)
T ss_dssp EEESSSS-EEEEESTT
T ss_pred EEecCCCCEEEEeCCc
Confidence 344 46899998854
No 197
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=61.80 E-value=76 Score=29.87 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=46.1
Q ss_pred cccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeC
Q 002740 176 RVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLA 251 (885)
Q Consensus 176 ~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~ 251 (885)
...+.+.+||++++ +|+.+... ..+.........+..+|+|.++.-........-++|.+.+..++.|.....
T Consensus 17 ~~~~~IvsFDv~~E--~f~~i~~P-~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 17 SDNNVIVSFDVRSE--KFRFIKLP-EDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHI 89 (129)
T ss_pred CCCcEEEEEEcCCc--eEEEEEee-eeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEE
Confidence 34567899999999 88777542 112333344445556777777654433223457899999877777875433
No 198
>PRK04792 tolB translocation protein TolB; Provisional
Probab=60.25 E-value=3.3e+02 Score=31.71 Aligned_cols=142 Identities=14% Similarity=0.173 Sum_probs=72.5
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCcc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~ 154 (885)
..+|++|+.+++-+.+.... ..-...+..-.++.|++....+ ...++|.+|+.+.+ ..++.... -.
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~dl~tg~--~~~lt~~~-----~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKD----GQPEIYVVDIATKA--LTRITRHR-----AI 307 (448)
T ss_pred cEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCC----CCeEEEEEECCCCC--eEECccCC-----CC
Confidence 46999999888777665321 1111111111244666554322 12579999998754 66652211 11
Q ss_pred ccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCccc
Q 002740 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 155 ~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~ 233 (885)
....+.. ++..+++.....+ ..++|.+|+.+. ++..+...+.. ........++..+++.+.... ..
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g--~~~~Lt~~g~~-----~~~~~~SpDG~~l~~~~~~~g---~~ 374 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGG---KPQIYRVNLASG--KVSRLTFEGEQ-----NLGGSITPDGRSMIMVNRTNG---KF 374 (448)
T ss_pred ccceEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEEecCCCC-----CcCeeECCCCCEEEEEEecCC---ce
Confidence 1122222 3334544332222 257999999887 77777533211 112233456555544443221 34
Q ss_pred ceEEEEcCCC
Q 002740 234 DAYGLLMHRN 243 (885)
Q Consensus 234 dv~~l~~~~~ 243 (885)
.+|.++....
T Consensus 375 ~I~~~dl~~g 384 (448)
T PRK04792 375 NIARQDLETG 384 (448)
T ss_pred EEEEEECCCC
Confidence 6888887654
No 199
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=59.90 E-value=2e+02 Score=29.16 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=31.7
Q ss_pred CEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 110 ~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
+..++.|+. ...+.+||..+.+... .+. .....-.++....++.+++.|+.+ ..+..||+.+.
T Consensus 63 ~~~l~~~~~------~~~i~i~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~ 125 (289)
T cd00200 63 GTYLASGSS------DKTIRLWDLETGECVR-TLT-----GHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETG 125 (289)
T ss_pred CCEEEEEcC------CCeEEEEEcCcccceE-EEe-----ccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCc
Confidence 345555653 2458889987632111 110 111112233333444566666533 35888998754
No 200
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=59.43 E-value=18 Score=38.86 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-----hHHHHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 591 GQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-----SLETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 591 G~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~-----s~evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
|-+.-+..+++...-...+ .-+|..||+++..+. ...++..|-.+. .-+...||||.
T Consensus 21 gG~~rl~~~i~~~r~~~~~-----~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~~GNHef 82 (257)
T cd07406 21 GGAARFATLRKQLRKENPN-----TLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLACFGNHEF 82 (257)
T ss_pred CCHHHHHHHHHHHHhcCCC-----EEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEeeccccc
Confidence 3456666677665432111 256779999987653 234555555553 23567899996
No 201
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=57.89 E-value=3.7e+02 Score=33.80 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred EEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCC--CCCccccEEEEECC----------------cEEE
Q 002740 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQG--PGPRYGHVMDLVSQ----------------RYLV 167 (885)
Q Consensus 106 ~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~--p~~R~~h~~~~~~~----------------~~ly 167 (885)
+++++.||+.... +.++.+|..+.+-.|+.-...... +....+-.+++++. ...+
T Consensus 191 lvvgg~lYv~t~~-------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 191 LKVGDTLYLCTPH-------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred EEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE
Q ss_pred EEecCCCCcccCcEEEEeCCCCCeeEE--------EcCCCCCCCCccccceEEEecCCEEEEEccCCCCC----Ccccce
Q 002740 168 SVSGNDGKRVLSDAWALDTAQKPYVWQ--------RLNPEGDRPSARMYATASARSDGMFLLCGGRDASG----APLADA 235 (885)
Q Consensus 168 v~GG~~~~~~~ndv~~~d~~t~~~~W~--------~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~----~~l~dv 235 (885)
+++..++ .++.+|.++....|. --...+..+......++....-+-.+|+|+...++ .....+
T Consensus 264 ~~~T~Dg-----~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 264 ILPTSDA-----RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred EEecCCC-----eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Q ss_pred EEEEcCCCC-eeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe
Q 002740 236 YGLLMHRNG-QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 236 ~~l~~~~~~-~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
..||..+.. .|+|.........+.. .+..|..||-+.-. ...||++++.
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~-------~g~~~~~gg~n~W~--------~~s~D~~~gl 388 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPA-------PGETYTRNTPNSWS--------VASYDEKLGL 388 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCC-------CCCEeccCCCCccC--------ceEEcCCCCe
No 202
>PRK03629 tolB translocation protein TolB; Provisional
Probab=57.65 E-value=3.5e+02 Score=31.23 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=70.7
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..+|++|+.+.+ -..+. ..+.. ....... ++.+|++....++ ..++|.+|+.+. +...+....
T Consensus 223 ~~i~i~dl~~G~--~~~l~---~~~~~--~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg--~~~~lt~~~---- 286 (429)
T PRK03629 223 SALVIQTLANGA--VRQVA---SFPRH--NGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASG--QIRQVTDGR---- 286 (429)
T ss_pred cEEEEEECCCCC--eEEcc---CCCCC--cCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCC--CEEEccCCC----
Confidence 468999987744 33431 11111 1122233 3334554333222 236999999887 666664331
Q ss_pred ccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCc
Q 002740 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAI 284 (885)
Q Consensus 205 ~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~ 284 (885)
. .........++..+++...... ..++|.++.... ..+.+...+ .........-+++.+++.+...+
T Consensus 287 ~-~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g-~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g---- 353 (429)
T PRK03629 287 S-NNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGG-APQRITWEG----SQNQDADVSSDGKFMVMVSSNGG---- 353 (429)
T ss_pred C-CcCceEECCCCCEEEEEeCCCC---CceEEEEECCCC-CeEEeecCC----CCccCEEECCCCCEEEEEEccCC----
Confidence 1 1122333456654444332111 246888877643 222222111 11111111224444444332221
Q ss_pred cCCCcEEEEECCCCeEEEccC
Q 002740 285 EGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 285 ~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...++++|+.+..+..+..
T Consensus 354 --~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 354 --QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred --CceEEEEECCCCCeEEeCC
Confidence 2358999999998887763
No 203
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=57.45 E-value=1e+02 Score=32.78 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=46.4
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcC-----CCCCcc-------ccEEEE--EecC---
Q 002740 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG-----PAGHST-------DDLYVL--DLTN--- 135 (885)
Q Consensus 73 ~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~-----~~~~~~-------~dl~~~--D~~~--- 135 (885)
+-+.+.+-+.....|..+..... ..-+..-.+.+++.||+||..- +++... ...++. ++.+
T Consensus 215 ~GS~L~rs~d~G~~w~slrfp~n--vHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~ 292 (367)
T PF12217_consen 215 PGSSLHRSDDNGQNWSSLRFPNN--VHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSL 292 (367)
T ss_dssp ---EEEEESSTTSS-EEEE-TT-----SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---
T ss_pred CcceeeeecccCCchhhcccccc--ccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCc
Confidence 34678888888889998864321 1223334567899999999632 222111 123333 3322
Q ss_pred CccEEEEEee---cCCCCCCccccEEEEECCc-EEEEEecCC
Q 002740 136 DKFKWHRVVV---QGQGPGPRYGHVMDLVSQR-YLVSVSGND 173 (885)
Q Consensus 136 ~~~~W~~l~~---~~~~p~~R~~h~~~~~~~~-~lyv~GG~~ 173 (885)
+.-+|..+.. .|...-...|...+++.++ .+|+|||.+
T Consensus 293 d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 293 DDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred cceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 2234666542 3455555566666666666 566999964
No 204
>PRK13684 Ycf48-like protein; Provisional
Probab=56.90 E-value=3.2e+02 Score=30.48 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=92.3
Q ss_pred ceEecCCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCC
Q 002740 18 TYWDTDEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPP 97 (885)
Q Consensus 18 ~~w~~~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P 97 (885)
..|+... .|....-..+++.. .++.|++|-. ..++.=.-.-.+|++.....+ .
T Consensus 35 ~~W~~~~-~~~~~~l~~v~F~d-----~~~g~avG~~--------------------G~il~T~DgG~tW~~~~~~~~-~ 87 (334)
T PRK13684 35 SPWQVID-LPTEANLLDIAFTD-----PNHGWLVGSN--------------------RTLLETNDGGETWEERSLDLP-E 87 (334)
T ss_pred CCcEEEe-cCCCCceEEEEEeC-----CCcEEEEECC--------------------CEEEEEcCCCCCceECccCCc-c
Confidence 4587665 34433334445441 4466776621 234442234468998753321 1
Q ss_pred cccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcc
Q 002740 98 SPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRV 177 (885)
Q Consensus 98 ~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~ 177 (885)
......+....++..|+.|.. + -+ |-..+.--+|.++......|. ....+..++...+++.|..
T Consensus 88 ~~~~l~~v~~~~~~~~~~G~~---g----~i--~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~----- 151 (334)
T PRK13684 88 ENFRLISISFKGDEGWIVGQP---S----LL--LHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV----- 151 (334)
T ss_pred cccceeeeEEcCCcEEEeCCC---c----eE--EEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-----
Confidence 111222333345566666532 1 12 333332235998843112222 2223444455455655432
Q ss_pred cCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCC
Q 002740 178 LSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS 257 (885)
Q Consensus 178 ~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~ 257 (885)
..+++-+-.-. +|+.+... .....+......++.+++.|... .++........ +|..... +.
T Consensus 152 -G~i~~S~DgG~--tW~~~~~~----~~g~~~~i~~~~~g~~v~~g~~G-------~i~~s~~~gg~--tW~~~~~--~~ 213 (334)
T PRK13684 152 -GAIYRTTDGGK--NWEALVED----AAGVVRNLRRSPDGKYVAVSSRG-------NFYSTWEPGQT--AWTPHQR--NS 213 (334)
T ss_pred -ceEEEECCCCC--CceeCcCC----CcceEEEEEECCCCeEEEEeCCc-------eEEEEcCCCCC--eEEEeeC--CC
Confidence 24555544444 89998653 22334455555677666665431 23332112112 3544432 23
Q ss_pred ccceeEEEEE-CCEEEEEcc
Q 002740 258 PRYQHAAVFV-GARLHVTGG 276 (885)
Q Consensus 258 ~R~~hs~~~~-~~~i~V~GG 276 (885)
.+.-+++++. ++.++++|.
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred cccceeeeEcCCCCEEEEec
Confidence 3444454444 577888864
No 205
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=56.19 E-value=3.1e+02 Score=30.58 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=81.4
Q ss_pred CccEEEEE--CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCccc
Q 002740 101 AAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVL 178 (885)
Q Consensus 101 ~~ha~~~~--~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ 178 (885)
..|.+... ++.+|+.. ...+.++.|+.+....+..........+..-=.|....-+++++||..-. .
T Consensus 145 h~H~v~~~pdg~~v~v~d------lG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~-----s 213 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPD------LGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL-----S 213 (345)
T ss_dssp CEEEEEE-TTSSEEEEEE------TTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT-----T
T ss_pred cceeEEECCCCCEEEEEe------cCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC-----C
Confidence 34555555 34777753 13467999999875422433221111222222233323355689987643 3
Q ss_pred CcEEEEeCC--CCCeeEEEcCCCCCCC---Ccc-ccceEEEecCC-EEEEEccCCCCCCcccceEEEEc-CCCCeeEEEe
Q 002740 179 SDAWALDTA--QKPYVWQRLNPEGDRP---SAR-MYATASARSDG-MFLLCGGRDASGAPLADAYGLLM-HRNGQWEWTL 250 (885)
Q Consensus 179 ndv~~~d~~--t~~~~W~~l~~~g~~P---~~r-~~hsa~~~~~~-~l~v~GG~~~~~~~l~dv~~l~~-~~~~~W~w~~ 250 (885)
+.|.+|+.. +. .++.+......| ... ..+......++ .+|+.- +. .+.+..|+. ..++..+++.
T Consensus 214 ~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn-r~-----~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 214 NTVSVFDYDPSDG--SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN-RG-----SNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp TEEEEEEEETTTT--EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE-CT-----TTEEEEEEECTTTTTEEEEE
T ss_pred CcEEEEeecccCC--ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe-cc-----CCEEEEEEEecCCCceEEEE
Confidence 456666665 44 555443222122 122 22233344555 556533 22 345666666 3445555443
Q ss_pred CC---CCCCCccceeEEEE--ECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccC
Q 002740 251 AP---GVAPSPRYQHAAVF--VGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 251 ~~---~~~P~~R~~hs~~~--~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
.- +. .|| .+++ -+..|||.+...+ .-.++..|.++..+..+..
T Consensus 286 ~~~~~G~--~Pr---~~~~s~~g~~l~Va~~~s~-------~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 286 TVPTGGK--FPR---HFAFSPDGRYLYVANQDSN-------TVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEESSS--SEE---EEEE-TTSSEEEEEETTTT-------EEEEEEEETTTTEEEEEEE
T ss_pred EEeCCCC--Ccc---EEEEeCCCCEEEEEecCCC-------eEEEEEEeCCCCcEEEecc
Confidence 32 22 233 2333 2556666543211 1234455778889888764
No 206
>PRK04792 tolB translocation protein TolB; Provisional
Probab=56.11 E-value=3.8e+02 Score=31.17 Aligned_cols=146 Identities=17% Similarity=0.229 Sum_probs=72.0
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..+|++|+.+.+ -..+. ..+..- ...... ++..+++....++ ..++|.+|+.++ +...+....
T Consensus 242 ~~L~~~dl~tg~--~~~lt---~~~g~~--~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg--~~~~lt~~~---- 305 (448)
T PRK04792 242 AEIFVQDIYTQV--REKVT---SFPGIN--GAPRFSPDGKKLALVLSKDG---QPEIYVVDIATK--ALTRITRHR---- 305 (448)
T ss_pred cEEEEEECCCCC--eEEec---CCCCCc--CCeeECCCCCEEEEEEeCCC---CeEEEEEECCCC--CeEECccCC----
Confidence 469999998754 44442 122111 122233 3334554433332 257999999887 677765431
Q ss_pred ccccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCC
Q 002740 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGR 282 (885)
Q Consensus 205 ~r~~hsa~~~~~~~-l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~ 282 (885)
. .........++. +++.....+ ..++|.++.... +++.+...+. +....++. +++.+++.+... +
T Consensus 306 ~-~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g-~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~-g- 372 (448)
T PRK04792 306 A-IDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASG-KVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTN-G- 372 (448)
T ss_pred C-CccceEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEEecCCC-----CCcCeeECCCCCEEEEEEecC-C-
Confidence 1 111222334554 444332221 246888887644 4443322211 11112222 444444433222 1
Q ss_pred CccCCCcEEEEECCCCeEEEcc
Q 002740 283 AIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|+.+.....+.
T Consensus 373 ----~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 373 ----KFNIARQDLETGAMQVLT 390 (448)
T ss_pred ----ceEEEEEECCCCCeEEcc
Confidence 246899999998877664
No 207
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=55.00 E-value=2.4e+02 Score=28.58 Aligned_cols=156 Identities=13% Similarity=0.069 Sum_probs=75.2
Q ss_pred EEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCC-CccccceEEEecC-CEEEEEccCCCCCCcccce
Q 002740 158 MDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP-SARMYATASARSD-GMFLLCGGRDASGAPLADA 235 (885)
Q Consensus 158 ~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P-~~r~~hsa~~~~~-~~l~v~GG~~~~~~~l~dv 235 (885)
++... +.+|+|-|. .+|+++.......-..+... .| .+..-.++....+ +++|+|-|. ..
T Consensus 12 ~~~~~-g~~y~FkG~-------~~w~~~~~~~~~~p~~I~~~--w~~~p~~IDAa~~~~~~~~~yfFkg~--------~y 73 (194)
T cd00094 12 VTTLR-GELYFFKGR-------YFWRLSPGKPPGSPFLISSF--WPSLPSPVDAAFERPDTGKIYFFKGD--------KY 73 (194)
T ss_pred EEEeC-CEEEEEeCC-------EEEEEeCCCCCCCCeEhhhh--CCCCCCCccEEEEECCCCEEEEECCC--------EE
Confidence 33444 689998774 57888764221111222221 11 2223445555444 889988763 46
Q ss_pred EEEEcCCCCeeEEEe-C--CCCCCC-ccceeEEEEE--CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCc-c
Q 002740 236 YGLLMHRNGQWEWTL-A--PGVAPS-PRYQHAAVFV--GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLV-T 308 (885)
Q Consensus 236 ~~l~~~~~~~W~w~~-~--~~~~P~-~R~~hs~~~~--~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~-~ 308 (885)
|.|+.... .+..-+ + -+.++. ... .++... ++++|+|-| +..|.||....+...--+.. .
T Consensus 74 w~~~~~~~-~~~~Pk~i~~~~~~~~~~~i-DAA~~~~~~~~~yfFkg-----------~~y~ry~~~~~~v~~~yP~~i~ 140 (194)
T cd00094 74 WVYTGKNL-EPGYPKPISDLGFPPTVKQI-DAALRWPDNGKTYFFKG-----------DKYWRYDEKTQKMDPGYPKLIE 140 (194)
T ss_pred EEEcCccc-ccCCCcchhhcCCCCCCCCc-cEEEEEcCCCEEEEEeC-----------CEEEEEeCCCccccCCCCcchh
Confidence 77765421 110000 0 011111 122 223223 579999987 34899997665432110000 0
Q ss_pred cCCCCCCCCCCCCCcCcccccceEEEEEC-CEEEEEcCCCCCCCCCcEEEeeCCCC
Q 002740 309 SSRTSKGHGEHDPSLELMRRCRHASASIG-VRIYIYGGLKGDILLDDFLVAENSPF 363 (885)
Q Consensus 309 ~~~~~~~~~~~~~~~~p~~R~~hs~~~~~-~~IyI~GG~~~~~~~~D~~~ld~~~~ 363 (885)
..+ +-.+..-.++.... +++|+|-| +..|.+|....
T Consensus 141 ~~w------------~g~p~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~ 177 (194)
T cd00094 141 TDF------------PGVPDKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSK 177 (194)
T ss_pred hcC------------CCcCCCcceeEEeCCCcEEEEEC-------CEEEEEeCccc
Confidence 000 00122123344444 78999988 35677776654
No 208
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=54.61 E-value=2.8e+02 Score=29.13 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=46.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
+.+++||..+.+....-..+. .+ ...+.. ++.+|+.++. ...+.+||+.+.+. ...+. ..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~~--~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~-~~~~~------~~ 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSGP--DP---ELFALHPNGKILYIANED------DNLVTVIDIETRKV-LAEIP------VG 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCCC--Cc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeE-EeEee------CC
Confidence 568889998877654221111 11 122222 3467666542 23589999987431 12221 11
Q ss_pred ccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 153 RYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 153 R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
..-+.++...++.+++++..++ +.+..||..+.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~ 147 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTY 147 (300)
T ss_pred CCcceEEECCCCCEEEEEecCC----CeEEEEeCCCC
Confidence 1123444444555666655432 23566787765
No 209
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=54.05 E-value=3.7e+02 Score=30.42 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=72.0
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCcc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRY 154 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~ 154 (885)
..+|++|+.++....+.... ......+..--++.+++..... ...++|.+|+.+.. ...+......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~---~~~~~~~~spDg~~l~~~~~~~----~~~~i~~~d~~~~~--~~~l~~~~~~----- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFP---GMNGAPAFSPDGSKLAVSLSKD----GNPDIYVMDLDGKQ--LTRLTNGPGI----- 279 (417)
T ss_pred cEEEEEECCCCCEEEeecCC---CCccceEECCCCCEEEEEECCC----CCccEEEEECCCCC--EEECCCCCCC-----
Confidence 57999999988777665321 1111111111234566544321 12579999998754 5555221111
Q ss_pred ccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCccc
Q 002740 155 GHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 155 ~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~ 233 (885)
....... ++.++++.....+ ...+|.+|+.+. .+..+...+ ..........++..+++..... ...
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~--~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~---~~~ 346 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGG---SPQIYMMDADGG--EVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG---GGF 346 (417)
T ss_pred CCCEEECCCCCEEEEEECCCC---CceEEEEECCCC--CEEEeecCC-----CCccCeEECCCCCEEEEEEccC---Cce
Confidence 1111122 3334443332222 247999999887 666665332 1122333445666666665433 234
Q ss_pred ceEEEEcCC
Q 002740 234 DAYGLLMHR 242 (885)
Q Consensus 234 dv~~l~~~~ 242 (885)
.++.++...
T Consensus 347 ~i~~~d~~~ 355 (417)
T TIGR02800 347 NIAVMDLDG 355 (417)
T ss_pred EEEEEeCCC
Confidence 678887765
No 210
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=53.66 E-value=2.3e+02 Score=32.62 Aligned_cols=126 Identities=11% Similarity=0.101 Sum_probs=60.8
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEE----ECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCC-
Q 002740 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAA----VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ- 148 (885)
Q Consensus 74 ~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~----~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~- 148 (885)
..++|++.+.++.--.+- .+-+. +.+. .++++++-||.++. +..|.+.+- +....+
T Consensus 102 ~g~lYlWelssG~LL~v~------~aHYQ-~ITcL~fs~dgs~iiTgskDg~------V~vW~l~~l------v~a~~~~ 162 (476)
T KOG0646|consen 102 SGNLYLWELSSGILLNVL------SAHYQ-SITCLKFSDDGSHIITGSKDGA------VLVWLLTDL------VSADNDH 162 (476)
T ss_pred cCcEEEEEeccccHHHHH------Hhhcc-ceeEEEEeCCCcEEEecCCCcc------EEEEEEEee------cccccCC
Confidence 577999988876432111 11111 2222 26688888886432 444444320 000001
Q ss_pred CCCCc---cccEEEEECCcEEEEEecCCCCc----ccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEE
Q 002740 149 GPGPR---YGHVMDLVSQRYLVSVSGNDGKR----VLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLL 221 (885)
Q Consensus 149 ~p~~R---~~h~~~~~~~~~lyv~GG~~~~~----~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v 221 (885)
.+.|+ .+|++.+.+ ..+-+||.+..- .-+.+-+||+... .-+... -.|+.-+++++...+..+.
T Consensus 163 ~~~p~~~f~~HtlsITD--l~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----~LLlti---~fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITD--LQIGSGGTNARLYTASEDRTIKLWDLSLG----VLLLTI---TFPSSIKAVALDPAERVVY 233 (476)
T ss_pred CccceeeeccCcceeEE--EEecCCCccceEEEecCCceEEEEEeccc----eeeEEE---ecCCcceeEEEcccccEEE
Confidence 22233 456664443 444456543321 1234666777765 222111 2455567777666666666
Q ss_pred EccCCC
Q 002740 222 CGGRDA 227 (885)
Q Consensus 222 ~GG~~~ 227 (885)
+|+..+
T Consensus 234 iGt~~G 239 (476)
T KOG0646|consen 234 IGTEEG 239 (476)
T ss_pred ecCCcc
Confidence 676543
No 211
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.29 E-value=30 Score=39.52 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=52.9
Q ss_pred cCCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCC
Q 002740 580 RAPVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
.++|.||||.-|.++.|.+-.+...-.. | ++.-++++|++.+--.++.|++.+.... ...|--++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~--G--pFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKS--G--PFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcC--C--CceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 3689999999999999988776654221 1 1125788999998877888888877664 35677788877765
No 212
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=53.18 E-value=2.6e+02 Score=28.33 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=42.7
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
+.+++||..+.+....-.. ....-.++... ++.+++.|+. ...+.+||+.+.+. ...+ . ....
T Consensus 73 ~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~~~~---~--~~~~ 136 (289)
T cd00200 73 KTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGKC-LTTL---R--GHTD 136 (289)
T ss_pred CeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcEE-EEEe---c--cCCC
Confidence 5678888876432211110 00111122222 2356666652 23588999876331 1222 1 1111
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 154 ~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
.-.++....++.+++.|..++ .+.+||+.+.
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~-----~i~i~d~~~~ 167 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDG-----TIKLWDLRTG 167 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCC-----cEEEEEcccc
Confidence 122333333345555554333 5888888654
No 213
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=52.93 E-value=4e+02 Score=30.38 Aligned_cols=205 Identities=12% Similarity=0.068 Sum_probs=99.4
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCC-----CCccccEEEEEecCCccEEEEEeec
Q 002740 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPA-----GHSTDDLYVLDLTNDKFKWHRVVVQ 146 (885)
Q Consensus 74 ~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~-----~~~~~dl~~~D~~~~~~~W~~l~~~ 146 (885)
...++++|+.+++...-. ..+...+.+.+ ++..|++...... ......+|+..+.+..-.=..+ ..
T Consensus 149 ~~~l~v~Dl~tg~~l~d~------i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lv-fe 221 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDG------IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELV-FE 221 (414)
T ss_dssp EEEEEEEETTTTEEEEEE------EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEE-EC
T ss_pred eEEEEEEECCCCcCcCCc------ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeE-Ee
Confidence 356999999998554321 22333332333 3344444443332 2236778999887743221122 11
Q ss_pred CCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCC---CeeEEEcCCCCCCCCccccceEEEecCCEEEEEc
Q 002740 147 GQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK---PYVWQRLNPEGDRPSARMYATASARSDGMFLLCG 223 (885)
Q Consensus 147 ~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~---~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~G 223 (885)
.. ..+-....+....++.++++.-..+.. .+++|.+|+... ...|..+... ... ....+...++.+|+.-
T Consensus 222 ~~-~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~----~~~-~~~~v~~~~~~~yi~T 294 (414)
T PF02897_consen 222 EP-DEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPR----EDG-VEYYVDHHGDRLYILT 294 (414)
T ss_dssp -T-TCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEES----SSS--EEEEEEETTEEEEEE
T ss_pred ec-CCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCC----CCc-eEEEEEccCCEEEEee
Confidence 11 111113233333443444343333333 578999999873 3468777542 111 1222333477788766
Q ss_pred cCCCCCCcccceEEEEcCCCC--eeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECC-CCeE
Q 002740 224 GRDASGAPLADAYGLLMHRNG--QWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTA-AGVW 300 (885)
Q Consensus 224 G~~~~~~~l~dv~~l~~~~~~--~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~-t~~W 300 (885)
..+ .....+..++..... .|.-+..+.. ....--.+...+++|++.-=... ...+.++|.. +..-
T Consensus 295 n~~---a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~~~~~~Lvl~~~~~~-------~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 295 NDD---APNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVSLFKDYLVLSYRENG-------SSRLRVYDLDDGKES 362 (414)
T ss_dssp -TT----TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEEEETTEEEEEEEETT-------EEEEEEEETT-TEEE
T ss_pred CCC---CCCcEEEEecccccccccceeEEcCCC--CceeEEEEEEECCEEEEEEEECC-------ccEEEEEECCCCcEE
Confidence 532 334567777776654 2443222211 12233444556888887743221 3568999998 4444
Q ss_pred EEcc
Q 002740 301 LDRN 304 (885)
Q Consensus 301 ~~v~ 304 (885)
..++
T Consensus 363 ~~~~ 366 (414)
T PF02897_consen 363 REIP 366 (414)
T ss_dssp EEEE
T ss_pred eeec
Confidence 4443
No 214
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=52.83 E-value=26 Score=37.77 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=46.1
Q ss_pred CeEEEecCCCC--HHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 582 PVKVFGDLHGQ--FGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~--~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+|.++|||=|. ...|...|..+......+ -+|..||...-| --+-++...|..+-+ .++.+ |||+.-
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D-----~vIaNgEn~~gG~Gi~~~~~~~L~~~Gv----DviT~-GNH~~D 71 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQAD-----LVIANGENTTHGKGLTLKIYEFLKQSGV----NYITM-GNHTWF 71 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCC-----EEEEcCcccCCCCCCCHHHHHHHHhcCC----CEEEc-cchhcc
Confidence 58999999999 466666666654322221 355589999766 457888888887643 46655 999874
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=52.39 E-value=4.2e+02 Score=30.54 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=71.7
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCC
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P 203 (885)
...+|++|+.+.+ ...+. ..+... .+.... ++.++++....++ ..++|.+|+.+. ....+....
T Consensus 227 ~~~l~~~dl~~g~--~~~l~---~~~g~~--~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g--~~~~lt~~~--- 291 (433)
T PRK04922 227 RSAIYVQDLATGQ--RELVA---SFRGIN--GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSR--QLTRLTNHF--- 291 (433)
T ss_pred CcEEEEEECCCCC--EEEec---cCCCCc--cCceECCCCCEEEEEEeCCC---CceEEEEECCCC--CeEECccCC---
Confidence 3569999998754 44442 222111 122222 3334544333222 257999999887 555554321
Q ss_pred CccccceEEEecCCEEEEEcc-CCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE--CCEEEEEcccCCC
Q 002740 204 SARMYATASARSDGMFLLCGG-RDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV--GARLHVTGGALRG 280 (885)
Q Consensus 204 ~~r~~hsa~~~~~~~l~v~GG-~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~--~~~i~V~GG~~~~ 280 (885)
. .........++..+++.. ..+ ..++|.++.... .++.+...+ .+....++. +.+|++..+. .
T Consensus 292 -~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~- 357 (433)
T PRK04922 292 -G-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGG-SAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G- 357 (433)
T ss_pred -C-CccceEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEeecCC-----CCccCEEECCCCCEEEEEECC-C-
Confidence 1 111223345665444432 221 246888876543 334333221 222222332 4455554331 1
Q ss_pred CCCccCCCcEEEEECCCCeEEEcc
Q 002740 281 GRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 281 ~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
+ ...++++|+.+.+...+.
T Consensus 358 ~-----~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 358 G-----QYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred C-----ceeEEEEECCCCCeEECC
Confidence 1 236999999998887665
No 216
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=52.18 E-value=3.5e+02 Score=29.59 Aligned_cols=98 Identities=12% Similarity=0.030 Sum_probs=46.1
Q ss_pred CcEEEEECC-CCcEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCC
Q 002740 75 NSVHLYDVL-TRKWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 75 ~dv~~yD~~-t~~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~ 151 (885)
+.+..|++. +++++.+.... .+-..+.++.. ++.+|+..- ..+.+.+|+++++......+ ...+.
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~~~~~g~~~~~~---~~~~~ 124 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESP---LPGSPTHISTDHQGRFLFSASY------NANCVSVSPLDKDGIPVAPI---QIIEG 124 (330)
T ss_pred CcEEEEEECCCCceEEeeeec---CCCCceEEEECCCCCEEEEEEc------CCCeEEEEEECCCCCCCCce---eeccC
Confidence 446667765 45676554221 11111222222 346666542 13557888886432111122 11122
Q ss_pred CccccEEEEEC-CcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 152 PRYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 152 ~R~~h~~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
...-|.+++.. ++++|+..-. .+.+++||+.+.
T Consensus 125 ~~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~~~ 158 (330)
T PRK11028 125 LEGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLSDD 158 (330)
T ss_pred CCcccEeEeCCCCCEEEEeeCC-----CCEEEEEEECCC
Confidence 22345554443 3466664422 246888988763
No 217
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=51.57 E-value=2.8e+02 Score=29.88 Aligned_cols=127 Identities=17% Similarity=0.227 Sum_probs=62.0
Q ss_pred ccCcEEEEECCCCc--------EEEecCCCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccccEEEEEecCCccEEEE
Q 002740 73 VTNSVHLYDVLTRK--------WTRIRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHR 142 (885)
Q Consensus 73 ~~~dv~~yD~~t~~--------W~~l~~~~~~P~~R~~ha~~~~~--~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~ 142 (885)
....|.+||+.... ..+++ .+-+.-..+.++ +..+|.|+.. ..+-.||..++. +...
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~------t~~skit~a~Wg~l~~~ii~Ghe~------G~is~~da~~g~-~~v~ 184 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIP------TPDSKITSALWGPLGETIIAGHED------GSISIYDARTGK-ELVD 184 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEec------CCccceeeeeecccCCEEEEecCC------CcEEEEEcccCc-eeee
Confidence 35667778776332 33332 334555566664 4666777643 237888888742 1111
Q ss_pred EeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEE
Q 002740 143 VVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLC 222 (885)
Q Consensus 143 l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~ 222 (885)
. .--..+.-..+....+..+++-|..+.+..+-|+..+...+ +.....+. ..++..-..+.+++.
T Consensus 185 s----~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~te~Pv--------N~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 185 S----DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTTERPV--------NTAAISPLLDHVILG 249 (327)
T ss_pred c----hhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eeeecccc--------cceecccccceEEec
Confidence 1 11111111122233455778777777665554444444333 22222221 223333455677777
Q ss_pred ccCCC
Q 002740 223 GGRDA 227 (885)
Q Consensus 223 GG~~~ 227 (885)
||.+.
T Consensus 250 GGqeA 254 (327)
T KOG0643|consen 250 GGQEA 254 (327)
T ss_pred CCcee
Confidence 77543
No 218
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=51.07 E-value=22 Score=38.77 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=14.1
Q ss_pred HHHHH---cCCeEEEEeccccc
Q 002740 772 DFCKR---NKLQLIIRAHECVM 790 (885)
Q Consensus 772 ~fl~~---~~l~~iiR~H~~~~ 790 (885)
++.++ .++++||=||+-+.
T Consensus 200 ~lA~~~~~~giD~IigGHsH~~ 221 (285)
T cd07405 200 EMARALPAGGLDLIVGGHSQDP 221 (285)
T ss_pred HHHHhcCCCCCCEEEeCCCCcc
Confidence 45555 58999999997653
No 219
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=50.92 E-value=40 Score=37.24 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=29.2
Q ss_pred eEEEeccccCCC--CChHHHHHHHHHHHhcCCCcEEEeccCCcccc
Q 002740 616 DYLFLGDYVDRG--QHSLETITLLLALKIEYPENVHLIRGNHEAAD 659 (885)
Q Consensus 616 ~~vfLGDyvDRG--~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 659 (885)
-+||+||.|+-- .+...+|.-.++=.+.+.--...+.||||...
T Consensus 103 lVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 103 LVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGNHDDES 148 (379)
T ss_pred EEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEeccccccc
Confidence 699999999862 12334444444445555556788999999753
No 220
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=50.89 E-value=3.3e+02 Score=28.85 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=71.1
Q ss_pred EEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCcccc-EEEEECCcEEEEEecCCCCcccCcEEEE
Q 002740 106 AAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH-VMDLVSQRYLVSVSGNDGKRVLSDAWAL 184 (885)
Q Consensus 106 ~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h-~~~~~~~~~lyv~GG~~~~~~~ndv~~~ 184 (885)
..-++.+++.. .............+..+.. -+|....... ....... +++...++.++++--..... .++.+
T Consensus 115 ~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~~~~---~~~~~ 187 (275)
T PF13088_consen 115 QLPDGRLIAPY-YHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTEGND---DIYIS 187 (275)
T ss_dssp EECTTEEEEEE-EEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEECSST---EEEEE
T ss_pred EecCCCEEEEE-eeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEccCCC---cEEEE
Confidence 33467777762 1111112233344555443 3598874322 2223333 33344666777766543111 44444
Q ss_pred eCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCcccceEE-EEcCCCCeeEEEeCCCCCCCcccee-
Q 002740 185 DTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLADAYG-LLMHRNGQWEWTLAPGVAPSPRYQH- 262 (885)
Q Consensus 185 d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~-l~~~~~~~W~w~~~~~~~P~~R~~h- 262 (885)
-...+.-+|+..... ..|.+......+...++.++++... .... ..+.. +......+|.....-...+...+++
T Consensus 188 ~S~D~G~TWs~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~-~~~r--~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~ 263 (275)
T PF13088_consen 188 RSTDGGRTWSPPQPT-NLPNPNSSISLVRLSDGRLLLVYNN-PDGR--SNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYP 263 (275)
T ss_dssp EESSTTSS-EEEEEE-ECSSCCEEEEEEECTTSEEEEEEEC-SSTS--EEEEEEEECTTCEEEEEEEEEEEEE-CCEEEE
T ss_pred EECCCCCcCCCceec-ccCcccCCceEEEcCCCCEEEEEEC-CCCC--CceEEEEEeCCCCcCCccEEEeCCCCCcEECC
Confidence 333334489986532 2244444444455577788887772 1211 12222 2233244665443322212122333
Q ss_pred EEEEE-CCEEEE
Q 002740 263 AAVFV-GARLHV 273 (885)
Q Consensus 263 s~~~~-~~~i~V 273 (885)
+++.. +++|+|
T Consensus 264 ~~~~~~dg~l~i 275 (275)
T PF13088_consen 264 SLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEETTEEEE
T ss_pred eeEEeCCCcCCC
Confidence 33333 678886
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=50.64 E-value=4.5e+02 Score=30.32 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=64.9
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEec-CCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSG-NDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG-~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..+|.+|+.+.. -..+. ..+. .........++..++++. .++. -++|.+|+.+. ....+....
T Consensus 228 ~~i~i~dl~tg~--~~~l~---~~~g--~~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~--~~~~lt~~~---- 291 (429)
T PRK01742 228 SQLVVHDLRSGA--RKVVA---SFRG--HNGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGG--TPSQLTSGA---- 291 (429)
T ss_pred cEEEEEeCCCCc--eEEEe---cCCC--ccCceeECCCCCEEEEEEecCCc---EEEEEEECCCC--CeEeeccCC----
Confidence 458999997743 33332 1111 111233333333333433 3332 35899999876 555554321
Q ss_pred ccccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCC
Q 002740 205 ARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGR 282 (885)
Q Consensus 205 ~r~~hsa~~~~~~~-l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~ 282 (885)
..........|+. |++....++ ..++|.++.... .-+.. . . .. + ...+. +++.+++.+.
T Consensus 292 -~~~~~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~-~~~~l--~-~--~~-~--~~~~SpDG~~ia~~~~----- 352 (429)
T PRK01742 292 -GNNTEPSWSPDGQSILFTSDRSG----SPQVYRMSASGG-GASLV--G-G--RG-Y--SAQISADGKTLVMING----- 352 (429)
T ss_pred -CCcCCEEECCCCCEEEEEECCCC----CceEEEEECCCC-CeEEe--c-C--CC-C--CccCCCCCCEEEEEcC-----
Confidence 1122333445665 444333222 236777766533 11221 1 1 11 2 12222 4443334331
Q ss_pred CccCCCcEEEEECCCCeEEEcc
Q 002740 283 AIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 283 ~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
..++.+|..+..+..+.
T Consensus 353 -----~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 353 -----DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred -----CCEEEEECCCCCeEEec
Confidence 23778999998887654
No 222
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=50.13 E-value=4.2e+02 Score=29.80 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=77.2
Q ss_pred cCcEEEEECCCC--cEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCC
Q 002740 74 TNSVHLYDVLTR--KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 74 ~~dv~~yD~~t~--~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~ 151 (885)
.+.++.+|..+. .|+.-...+ . ..+...+.+.-++.+|+..- + . ...++.+|..+.+..|..-........
T Consensus 162 ~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~~~~~~vy~~~~-~---~-~~~~~a~~~~~G~~~w~~~~~~~~~~~ 234 (370)
T COG1520 162 DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPAIASGTVYVGSD-G---Y-DGILYALNAEDGTLKWSQKVSQTIGRT 234 (370)
T ss_pred CCeEEEEEccCCcEEEEEecCCc-c-ccccccCceeecceEEEecC-C---C-cceEEEEEccCCcEeeeeeeecccCcc
Confidence 467888888865 588443221 1 22333333344566666432 1 1 236999999888888985311111110
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCc
Q 002740 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 152 ~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~ 231 (885)
... ....+....+|+-|+.-.......++++|..+..-.|+.-... .....+.+-+.....+|.+|+....... ..
T Consensus 235 ~~~--~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~-~~~~~~~~~~~~~~~dG~v~~~~~~~~~-~~ 310 (370)
T COG1520 235 AIS--TTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGG-SVQGSGLYTTPVAGADGKVYIGFTDNDG-RG 310 (370)
T ss_pred ccc--ccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEeccc-EeccCCeeEEeecCCCccEEEEEecccc-cc
Confidence 000 1112222334433331111112348999998887789887641 1112222333333357888875432221 13
Q ss_pred ccceEEEEc
Q 002740 232 LADAYGLLM 240 (885)
Q Consensus 232 l~dv~~l~~ 240 (885)
...++.++.
T Consensus 311 ~~~~~~~~~ 319 (370)
T COG1520 311 SGSLYALAD 319 (370)
T ss_pred ccceEEEec
Confidence 455677766
No 223
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=49.74 E-value=53 Score=35.73 Aligned_cols=76 Identities=13% Similarity=0.239 Sum_probs=49.0
Q ss_pred CCeEEEecCC----CCHHHHHHHHHHhC-CCCCCCCcceeeEEEeccccCCC----CChH----HHHHHHHHH-HhcCC-
Q 002740 581 APVKVFGDLH----GQFGDLMRLFDEYG-FPSTAGDITYIDYLFLGDYVDRG----QHSL----ETITLLLAL-KIEYP- 645 (885)
Q Consensus 581 ~~i~vvGDiH----G~~~~L~~il~~~g-~~~~~~~~~~~~~vfLGDyvDRG----~~s~----evl~ll~~l-k~~~p- 645 (885)
..++|+||+| -.++.|.++|..+. .-+++ . ...-+||+|+++-+. ..+. |-..-|..| ..+||
T Consensus 28 ~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~-~-~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 28 HNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPEN-E-LPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHhhccCccc-C-CCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 4689999998 45678888888873 21211 1 133799999999663 2222 333344432 33455
Q ss_pred ----CcEEEeccCCccc
Q 002740 646 ----ENVHLIRGNHEAA 658 (885)
Q Consensus 646 ----~~v~llrGNHE~~ 658 (885)
.++++++|-.|-.
T Consensus 106 L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 106 ILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHhcCeEEEECCCCCCC
Confidence 6899999999974
No 224
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=49.49 E-value=4.1e+02 Score=30.88 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=93.8
Q ss_pred ccccEEEEEecCCccEEEEEee-cCCCCCCccccEEEEECCcEEEEEec--CCCCcccCcEEEEeCCCCCeeEEEcCCCC
Q 002740 124 STDDLYVLDLTNDKFKWHRVVV-QGQGPGPRYGHVMDLVSQRYLVSVSG--NDGKRVLSDAWALDTAQKPYVWQRLNPEG 200 (885)
Q Consensus 124 ~~~dl~~~D~~~~~~~W~~l~~-~~~~p~~R~~h~~~~~~~~~lyv~GG--~~~~~~~ndv~~~d~~t~~~~W~~l~~~g 200 (885)
+.+|+|.|++.+.+ =.++.. -|....+|+.. +++-++|.- ........|+++++.+.+ +=..++-.|
T Consensus 57 ~~DdlWe~slk~g~--~~ritS~lGVvnn~kf~p------dGrkvaf~rv~~~ss~~taDly~v~~e~G--e~kRiTyfG 126 (668)
T COG4946 57 CCDDLWEYSLKDGK--PLRITSGLGVVNNPKFSP------DGRKVAFSRVMLGSSLQTADLYVVPSEDG--EAKRITYFG 126 (668)
T ss_pred echHHHHhhhccCC--eeEEecccceeccccCCC------CCcEEEEEEEEecCCCccccEEEEeCCCC--cEEEEEEec
Confidence 45789999998743 333321 13333333332 122222211 011223568999999887 555665443
Q ss_pred CCCCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccC--
Q 002740 201 DRPSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGAL-- 278 (885)
Q Consensus 201 ~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~-- 278 (885)
.+....+--..++.++|.--....-.....+|......- ....+ +.--.+..++.+-++|+|--.
T Consensus 127 ----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~---~~e~L------nlGpathiv~~dg~ivigRntyd 193 (668)
T COG4946 127 ----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI---KTEPL------NLGPATHIVIKDGIIVIGRNTYD 193 (668)
T ss_pred ----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc---eeeec------cCCceeeEEEeCCEEEEccCccc
Confidence 222223334567777775433222111233333333211 11122 111123333433366776321
Q ss_pred --------CCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCCCCCC
Q 002740 279 --------RGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGLKGDI 350 (885)
Q Consensus 279 --------~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~~~~~ 350 (885)
++. ...+|+-.....++.++-.+.. .-.+-.+++++||.+--.+|
T Consensus 194 LP~WK~YkGGt-----rGklWis~d~g~tFeK~vdl~~--------------------~vS~PmIV~~RvYFlsD~eG-- 246 (668)
T COG4946 194 LPHWKGYKGGT-----RGKLWISSDGGKTFEKFVDLDG--------------------NVSSPMIVGERVYFLSDHEG-- 246 (668)
T ss_pred CcccccccCCc-----cceEEEEecCCcceeeeeecCC--------------------CcCCceEEcceEEEEecccC--
Confidence 222 3457877777778888777743 12345678999999887666
Q ss_pred CCCcEEEeeCCC
Q 002740 351 LLDDFLVAENSP 362 (885)
Q Consensus 351 ~~~D~~~ld~~~ 362 (885)
...+|..|++-
T Consensus 247 -~GnlYSvdldG 257 (668)
T COG4946 247 -VGNLYSVDLDG 257 (668)
T ss_pred -ccceEEeccCC
Confidence 34566666554
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=48.85 E-value=4.8e+02 Score=30.11 Aligned_cols=190 Identities=12% Similarity=0.088 Sum_probs=90.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
..+|++|+.+++-+.+.... . ........- +++|++..... + ..++|++|+.+.. ..++... ..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~---g-~~~~~~~SpDG~~l~~~~s~~-g---~~~Iy~~d~~~g~--~~~lt~~---~~-- 292 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFR---G-INGAPSFSPDGRRLALTLSRD-G---NPEIYVMDLGSRQ--LTRLTNH---FG-- 292 (433)
T ss_pred cEEEEEECCCCCEEEeccCC---C-CccCceECCCCCEEEEEEeCC-C---CceEEEEECCCCC--eEECccC---CC--
Confidence 56999999988877765321 1 111111222 34565543221 1 2579999998754 4444211 11
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCccc
Q 002740 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 154 ~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~ 233 (885)
.........++..++|...... ..++|.+|+.+. +++.+...+ ..........++..+++...... ..
T Consensus 293 ~~~~~~~spDG~~l~f~sd~~g--~~~iy~~dl~~g--~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~~~---~~ 360 (433)
T PRK04922 293 IDTEPTWAPDGKSIYFTSDRGG--RPQIYRVAASGG--SAERLTFQG-----NYNARASVSPDGKKIAMVHGSGG---QY 360 (433)
T ss_pred CccceEECCCCCEEEEEECCCC--CceEEEEECCCC--CeEEeecCC-----CCccCEEECCCCCEEEEEECCCC---ce
Confidence 1112233333343334432221 247999999877 666665332 11223334455544444322211 23
Q ss_pred ceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEc
Q 002740 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDR 303 (885)
Q Consensus 234 dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v 303 (885)
.++.++.... . ...+... +. -. .....-+++.+++..... + ...++.+|+....=..+
T Consensus 361 ~I~v~d~~~g-~--~~~Lt~~-~~-~~-~p~~spdG~~i~~~s~~~-g-----~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 361 RIAVMDLSTG-S--VRTLTPG-SL-DE-SPSFAPNGSMVLYATREG-G-----RGVLAAVSTDGRVRQRL 418 (433)
T ss_pred eEEEEECCCC-C--eEECCCC-CC-CC-CceECCCCCEEEEEEecC-C-----ceEEEEEECCCCceEEc
Confidence 6777776543 3 3333211 11 11 112223566555544322 1 24588888876543334
No 226
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=48.58 E-value=26 Score=38.21 Aligned_cols=38 Identities=24% Similarity=0.128 Sum_probs=23.3
Q ss_pred eEEEeccccCCCCCh-------HHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 616 DYLFLGDYVDRGQHS-------LETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
-+|..||+++.-+.+ .-++.++-++ +-=.+..||||.-
T Consensus 53 Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~m-----gyDa~tlGNHEFd 97 (282)
T cd07407 53 LLVDTGDLHDGNGLSDASPPPGSYSNPIFRMM-----PYDLLTIGNHELY 97 (282)
T ss_pred EEEeCCCccCCeeceeeecCCChHHHHHHHhc-----CCcEEeecccccC
Confidence 455699999754322 2234444444 3456789999984
No 227
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=48.23 E-value=3.4e+02 Score=28.29 Aligned_cols=155 Identities=14% Similarity=0.040 Sum_probs=75.8
Q ss_pred EEEEECCCCcEEEecCC--CCCCcccCccEEEEECCEEEEEcCcCCCCCcc--ccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 77 VHLYDVLTRKWTRIRPA--GEPPSPRAAHAAAAVGTMVVFQGGIGPAGHST--DDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 77 v~~yD~~t~~W~~l~~~--~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~--~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
+.++|+.+++++.+... +..+..+..-.++.-++.+|+.--........ ..+|+++.. .+ ...+... -
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~-----~ 133 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADG-----L 133 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEE-----E
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecC-----c
Confidence 45679999999988654 21133444444444467877753211111111 569999998 33 3333211 1
Q ss_pred ccccEEEEEC-CcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCc-cccceEEEecCCEEEEEccCCCCCC
Q 002740 153 RYGHVMDLVS-QRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA-RMYATASARSDGMFLLCGGRDASGA 230 (885)
Q Consensus 153 R~~h~~~~~~-~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~-r~~hsa~~~~~~~l~v~GG~~~~~~ 230 (885)
..-..++... ++.+|+.-- ..+.+|+|++......+.........+.. ..-..+++-.+|.||+..-
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~------ 202 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW------ 202 (246)
T ss_dssp SSEEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE------
T ss_pred ccccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc------
Confidence 1123444443 346776322 23459999886442223322111111111 1233445557888998632
Q ss_pred cccceEEEEcCCCCeeEEEeC
Q 002740 231 PLADAYGLLMHRNGQWEWTLA 251 (885)
Q Consensus 231 ~l~dv~~l~~~~~~~W~w~~~ 251 (885)
....++.|+.. .....-+.+
T Consensus 203 ~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 203 GGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp TTTEEEEEETT-SCEEEEEE-
T ss_pred CCCEEEEECCC-ccEEEEEcC
Confidence 13468888877 323344444
No 228
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=47.93 E-value=27 Score=41.65 Aligned_cols=72 Identities=25% Similarity=0.278 Sum_probs=42.5
Q ss_pred cCCeEEEecCCCCHH------------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCC------ChHHHHHHHHHHH
Q 002740 580 RAPVKVFGDLHGQFG------------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQ------HSLETITLLLALK 641 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~------------~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~------~s~evl~ll~~lk 641 (885)
+..|+-..|+||++. -+-++.........+.. ..-+|=.||+++..+ .....+.+|-.|+
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~--~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~ 103 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENK--NVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALG 103 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcC--CeEEEeCCcccCCccccccccCCChHHHHHhhcC
Confidence 345888999999998 33333322221111110 113444999999843 3445666776664
Q ss_pred hcCCCcEEEeccCCccc
Q 002740 642 IEYPENVHLIRGNHEAA 658 (885)
Q Consensus 642 ~~~p~~v~llrGNHE~~ 658 (885)
. =.+-.||||.-
T Consensus 104 y-----Da~tiGNHEFd 115 (517)
T COG0737 104 Y-----DAMTLGNHEFD 115 (517)
T ss_pred C-----cEEeecccccc
Confidence 3 35778999984
No 229
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=46.31 E-value=20 Score=39.51 Aligned_cols=72 Identities=26% Similarity=0.438 Sum_probs=44.9
Q ss_pred CeEEEecCCCCHHHHHHHHH---HhCCCCCCCCcceeeEEEeccccC-CCCChHHHHHH------HHH------HHhcCC
Q 002740 582 PVKVFGDLHGQFGDLMRLFD---EYGFPSTAGDITYIDYLFLGDYVD-RGQHSLETITL------LLA------LKIEYP 645 (885)
Q Consensus 582 ~i~vvGDiHG~~~~L~~il~---~~g~~~~~~~~~~~~~vfLGDyvD-RG~~s~evl~l------l~~------lk~~~p 645 (885)
+|.|-|=-||+++.+-+-+. +.|-.+-+ .++++||+=- |....+.++.. |-. =.+..|
T Consensus 2 rIaVqGCcHG~Ld~iYkti~~~ek~~~tkVD------LLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~AP 75 (456)
T KOG2863|consen 2 RIAVQGCCHGELDNIYKTISLIEKRGNTKVD------LLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAP 75 (456)
T ss_pred ceeeecccchhHHHHHHHHHHHHHcCCCCcc------EEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCc
Confidence 57899999999999875444 33333333 6888999963 43333332211 111 123456
Q ss_pred CcEEEeccCCcccc
Q 002740 646 ENVHLIRGNHEAAD 659 (885)
Q Consensus 646 ~~v~llrGNHE~~~ 659 (885)
---++|=||||.++
T Consensus 76 VlTIFIGGNHEAsn 89 (456)
T KOG2863|consen 76 VLTIFIGGNHEASN 89 (456)
T ss_pred eeEEEecCchHHHH
Confidence 56688999999874
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=45.13 E-value=5.4e+02 Score=29.66 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=68.9
Q ss_pred ccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCC
Q 002740 124 STDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRP 203 (885)
Q Consensus 124 ~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P 203 (885)
....+|+.|.+... =..+. .+. ..-.......++..++|...... -..+|++|+.+. ....+... +
T Consensus 180 ~~~~l~~~d~dg~~--~~~lt-~~~----~~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g--~~~~l~~~---~ 245 (435)
T PRK05137 180 RIKRLAIMDQDGAN--VRYLT-DGS----SLVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETG--QRELVGNF---P 245 (435)
T ss_pred cceEEEEECCCCCC--cEEEe-cCC----CCeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCC--cEEEeecC---C
Confidence 35679999987633 22231 111 11112222223333333332221 257999999887 56665432 1
Q ss_pred CccccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCC
Q 002740 204 SARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGG 281 (885)
Q Consensus 204 ~~r~~hsa~~~~~~-~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~ 281 (885)
. ...+.....++ ++++....++ ..++|.++.... ....+.... . ......+. +++-++|... ..+
T Consensus 246 g--~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~---~~~~Lt~~~-~--~~~~~~~spDG~~i~f~s~-~~g 312 (435)
T PRK05137 246 G--MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSG---TTTRLTDSP-A--IDTSPSYSPDGSQIVFESD-RSG 312 (435)
T ss_pred C--cccCcEECCCCCEEEEEEecCC----CceEEEEECCCC---ceEEccCCC-C--ccCceeEcCCCCEEEEEEC-CCC
Confidence 1 11222334555 4444333222 357888887655 223332211 1 11112222 4443334321 111
Q ss_pred CCccCCCcEEEEECCCCeEEEcc
Q 002740 282 RAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 282 ~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|..+.+...+.
T Consensus 313 -----~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 313 -----SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred -----CCeEEEEECCCCCeEEee
Confidence 246999999887777665
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=44.15 E-value=1.9e+02 Score=34.26 Aligned_cols=102 Identities=10% Similarity=0.016 Sum_probs=55.0
Q ss_pred ccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCC---C
Q 002740 73 VTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQ---G 149 (885)
Q Consensus 73 ~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~---~ 149 (885)
..++||++++..+.|..--... .+-..+....--+-++.+||.. ..+..+|+.++. ....+..... .
T Consensus 153 sg~evYRlNLEqGrfL~P~~~~---~~~lN~v~in~~hgLla~Gt~~------g~VEfwDpR~ks-rv~~l~~~~~v~s~ 222 (703)
T KOG2321|consen 153 SGSEVYRLNLEQGRFLNPFETD---SGELNVVSINEEHGLLACGTED------GVVEFWDPRDKS-RVGTLDAASSVNSH 222 (703)
T ss_pred cCcceEEEEccccccccccccc---cccceeeeecCccceEEecccC------ceEEEecchhhh-hheeeecccccCCC
Confidence 3578999999999987421111 1112222222235788888853 237888887643 2333332222 2
Q ss_pred CCCccc--cEEEEECC-cEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 150 PGPRYG--HVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 150 p~~R~~--h~~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
|..-.. .++..+.+ +.=+.+|-.+| .+++||+.+.
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts~G-----~v~iyDLRa~ 260 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTSTG-----SVLIYDLRAS 260 (703)
T ss_pred ccccccCcceEEEecCCceeEEeeccCC-----cEEEEEcccC
Confidence 332222 23333333 55555554444 5899999886
No 232
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=43.73 E-value=4.2e+02 Score=28.05 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=94.3
Q ss_pred CcEEEEECCCCcEEE-ecCCCCCCcccCccEEEEEC--CEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCC
Q 002740 75 NSVHLYDVLTRKWTR-IRPAGEPPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPG 151 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~-l~~~~~~P~~R~~ha~~~~~--~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~ 151 (885)
..++++|+.+++--+ +-.- -..--++.++ ..|++-|+. ...+-+||..+++ .+.+ .....
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH------~aqVNtV~fNeesSVv~Sgsf------D~s~r~wDCRS~s--~ePi---Qilde 143 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGH------LAQVNTVRFNEESSVVASGSF------DSSVRLWDCRSRS--FEPI---QILDE 143 (307)
T ss_pred ceEEEEEcccCeeeeecccc------cceeeEEEecCcceEEEeccc------cceeEEEEcccCC--CCcc---chhhh
Confidence 458899999875332 1100 1111223333 366776764 3458889998865 4444 34566
Q ss_pred CccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCc
Q 002740 152 PRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 152 ~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~ 231 (885)
.+.+-..+.+.+ ..+|.|..++ .+-.||+... +- .....+. |. .+.+...++...+.|-
T Consensus 144 a~D~V~Si~v~~-heIvaGS~DG-----tvRtydiR~G--~l-~sDy~g~-pi----t~vs~s~d~nc~La~~------- 202 (307)
T KOG0316|consen 144 AKDGVSSIDVAE-HEIVAGSVDG-----TVRTYDIRKG--TL-SSDYFGH-PI----TSVSFSKDGNCSLASS------- 202 (307)
T ss_pred hcCceeEEEecc-cEEEeeccCC-----cEEEEEeecc--ee-ehhhcCC-cc----eeEEecCCCCEEEEee-------
Confidence 777777766766 6777777666 4778888776 11 1111221 11 2233345655555553
Q ss_pred ccceEEEEcCCCCeeEEEeC-CCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCe
Q 002740 232 LADAYGLLMHRNGQWEWTLA-PGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGV 299 (885)
Q Consensus 232 l~dv~~l~~~~~~~W~w~~~-~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~ 299 (885)
++...++.+.++|+- ... .|. -..-|.--+++....-.|++|... ..++.||+....
T Consensus 203 l~stlrLlDk~tGkl--L~sYkGh-kn~eykldc~l~qsdthV~sgSED--------G~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 203 LDSTLRLLDKETGKL--LKSYKGH-KNMEYKLDCCLNQSDTHVFSGSED--------GKVYFWDLVDET 260 (307)
T ss_pred ccceeeecccchhHH--HHHhccc-ccceeeeeeeecccceeEEeccCC--------ceEEEEEeccce
Confidence 333444433322211 111 121 122344456666777888888533 348888887654
No 233
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=41.84 E-value=1.7e+02 Score=31.46 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCc
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHS 124 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~ 124 (885)
++.+|.--|..+ .+.+..+|+.+++-.+.. ..|..-.+-.++.++++||..=-.+
T Consensus 55 ~g~LyESTG~yG-----------------~S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk~----- 109 (264)
T PF05096_consen 55 DGTLYESTGLYG-----------------QSSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWKE----- 109 (264)
T ss_dssp TTEEEEEECSTT-----------------EEEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESSS-----
T ss_pred CCEEEEeCCCCC-----------------cEEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEecC-----
Confidence 678888777753 367899999998865443 2345567778899999999987642
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCC-CCCC
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPE-GDRP 203 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~-g~~P 203 (885)
...++||..+ . +.+ +..+.+.-|-.++..+ ..+|+--|. +.++.+|+++-. .=..+... +..|
T Consensus 110 -~~~f~yd~~t--l--~~~---~~~~y~~EGWGLt~dg-~~Li~SDGS------~~L~~~dP~~f~-~~~~i~V~~~g~p 173 (264)
T PF05096_consen 110 -GTGFVYDPNT--L--KKI---GTFPYPGEGWGLTSDG-KRLIMSDGS------SRLYFLDPETFK-EVRTIQVTDNGRP 173 (264)
T ss_dssp -SEEEEEETTT--T--EEE---EEEE-SSS--EEEECS-SCEEEE-SS------SEEEEE-TTT-S-EEEEEE-EETTEE
T ss_pred -CeEEEEcccc--c--eEE---EEEecCCcceEEEcCC-CEEEEECCc------cceEEECCcccc-eEEEEEEEECCEE
Confidence 4489999987 2 233 2233345777786544 478875553 568999987631 11112111 1111
Q ss_pred CccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCC
Q 002740 204 SARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAP 252 (885)
Q Consensus 204 ~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~ 252 (885)
..+-.- .-..+|.+|. .-. ..+.+.++|..+...-.|+.+.
T Consensus 174 v~~LNE--LE~i~G~IyA-----NVW-~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 174 VSNLNE--LEYINGKIYA-----NVW-QTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp ---EEE--EEEETTEEEE-----EET-TSSEEEEEETTT-BEEEEEE-H
T ss_pred CCCcEe--EEEEcCEEEE-----EeC-CCCeEEEEeCCCCeEEEEEEhh
Confidence 111110 1113444443 111 2455677777776666677665
No 234
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=41.39 E-value=5.3e+02 Score=31.76 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=43.9
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
+.+-.++..+.+..+--+.+ +.+++..+ +++.+|.|+.+ ..+.+||+.+.. .-..+
T Consensus 394 ~SikiWn~~t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k~------Gel~vfdlaS~~-----------l~Eti 450 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTITCG------YILASKFVPGDRYIVLGTKN------GELQVFDLASAS-----------LVETI 450 (888)
T ss_pred CcEEEEEccCcceeEEeccc------cEEEEEecCCCceEEEeccC------CceEEEEeehhh-----------hhhhh
Confidence 45667777766554422221 66666666 45666777643 238889987732 11222
Q ss_pred ccc-----EEEEECCcEEEEEecCCCC
Q 002740 154 YGH-----VMDLVSQRYLVSVSGNDGK 175 (885)
Q Consensus 154 ~~h-----~~~~~~~~~lyv~GG~~~~ 175 (885)
-.| ++....++.-++.||.+..
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDkt 477 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKT 477 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcE
Confidence 233 2333455577777877654
No 235
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=41.37 E-value=4.9e+02 Score=28.11 Aligned_cols=180 Identities=16% Similarity=0.226 Sum_probs=89.3
Q ss_pred CCCcccccceEec-CCCCCCCcccceEEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEE
Q 002740 10 APSYRTLETYWDT-DEDAPGPRCGHTLTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWT 88 (885)
Q Consensus 10 ~~~y~~~~~~w~~-~~~~P~~R~~ht~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~ 88 (885)
++.-|+.-..|.. .+..-+--.||+.++.-..-..+.+..+-|-++ +.+..+|+.+++-.
T Consensus 27 scaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD-------------------~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 27 SCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD-------------------QTAKLWDVETGKQL 87 (327)
T ss_pred EecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecccc-------------------ceeEEEEcCCCcEE
Confidence 4556777788876 455555566786665432223344555555333 55778899888644
Q ss_pred EecCCCCCCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCc-----cE-EEEEeecCCCCCCccccEEEEEC
Q 002740 89 RIRPAGEPPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDK-----FK-WHRVVVQGQGPGPRYGHVMDLVS 162 (885)
Q Consensus 89 ~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~-----~~-W~~l~~~~~~p~~R~~h~~~~~~ 162 (885)
-.-..+ .|..|.. ...++.++++-- ...-.....+.+||+.... .. ..++ |.+-...+.+.++
T Consensus 88 a~~k~~-~~Vk~~~---F~~~gn~~l~~t-D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI------~t~~skit~a~Wg 156 (327)
T KOG0643|consen 88 ATWKTN-SPVKRVD---FSFGGNLILAST-DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI------PTPDSKITSALWG 156 (327)
T ss_pred EEeecC-CeeEEEe---eccCCcEEEEEe-hhhcCcceEEEEEEccCChhhhcccCceEEe------cCCccceeeeeec
Confidence 322121 1222221 222333333321 1122234457788887422 11 2222 3333555555554
Q ss_pred C-cEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCC
Q 002740 163 Q-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASG 229 (885)
Q Consensus 163 ~-~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~ 229 (885)
. +..++.|..++ .+-.||..++ -+.+.. .+. ..+.-.......+..+||.|..+...
T Consensus 157 ~l~~~ii~Ghe~G-----~is~~da~~g---~~~v~s-~~~-h~~~Ind~q~s~d~T~FiT~s~Dtta 214 (327)
T KOG0643|consen 157 PLGETIIAGHEDG-----SISIYDARTG---KELVDS-DEE-HSSKINDLQFSRDRTYFITGSKDTTA 214 (327)
T ss_pred ccCCEEEEecCCC-----cEEEEEcccC---ceeeec-hhh-hccccccccccCCcceEEecccCccc
Confidence 2 34666777665 4788998875 122211 110 11111222334677888888776553
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=40.69 E-value=6.1e+02 Score=29.02 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=71.2
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECC-cEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..+|++|+.+.+ -..+. ..+. .........+ .++++....++ ..++|++|+.+. ....+....
T Consensus 223 ~~l~~~~l~~g~--~~~l~---~~~g--~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 286 (430)
T PRK00178 223 PRIFVQNLDTGR--REQIT---NFEG--LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASR--QLSRVTNHP---- 286 (430)
T ss_pred CEEEEEECCCCC--EEEcc---CCCC--CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCC--CeEEcccCC----
Confidence 469999998754 44442 1111 1112223323 34443322222 258999999987 666665321
Q ss_pred ccccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE--CCEEEEEcccCCCC
Q 002740 205 ARMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV--GARLHVTGGALRGG 281 (885)
Q Consensus 205 ~r~~hsa~~~~~~-~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~--~~~i~V~GG~~~~~ 281 (885)
. .........++ .+++.....+ ..++|.++.... .++.+...+ .+.....+. ++.|++... .. +
T Consensus 287 ~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g-~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~-~~-~ 353 (430)
T PRK00178 287 A-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGG-RAERVTFVG-----NYNARPRLSADGKTLVMVHR-QD-G 353 (430)
T ss_pred C-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCC-CEEEeecCC-----CCccceEECCCCCEEEEEEc-cC-C
Confidence 1 11222333455 4444332221 246888876544 333332211 111122222 345544432 21 1
Q ss_pred CCccCCCcEEEEECCCCeEEEccC
Q 002740 282 RAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 282 ~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...++++|+.+.+++.+..
T Consensus 354 -----~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 -----NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred -----ceEEEEEECCCCCEEEccC
Confidence 2359999999998877753
No 237
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=39.64 E-value=3.3e+02 Score=32.81 Aligned_cols=121 Identities=17% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCEEEEEcCcCCCCCccccEEEEEecCCc----cEEEEEeecCCCC-CCccc-cEEEEECCcEEEEEecCCCCcccCcEE
Q 002740 109 GTMVVFQGGIGPAGHSTDDLYVLDLTNDK----FKWHRVVVQGQGP-GPRYG-HVMDLVSQRYLVSVSGNDGKRVLSDAW 182 (885)
Q Consensus 109 ~~~iyv~GG~~~~~~~~~dl~~~D~~~~~----~~W~~l~~~~~~p-~~R~~-h~~~~~~~~~lyv~GG~~~~~~~ndv~ 182 (885)
++.+++-||.+ ..++++|+.+.. .+...+.+ ..++ +++.+ ++++.-..+.++|-||.. .++-
T Consensus 129 ~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~-~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr 196 (735)
T KOG0308|consen 129 NNELVASGGLD------RKIFLWDINTGTATLVASFNNVTV-NSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLR 196 (735)
T ss_pred CceeEEecCCC------ccEEEEEccCcchhhhhhcccccc-ccCCCCCccceeeeecCCcceEEEecCcc-----cceE
Confidence 67888999964 336777776431 11222322 2223 44433 344333445788888864 4788
Q ss_pred EEeCCCCCeeEEEcCCCCCCCCccccceE-----EEecCCEEEEEccCCCCC-----CcccceEEEEcCCCCeeEEEeCC
Q 002740 183 ALDTAQKPYVWQRLNPEGDRPSARMYATA-----SARSDGMFLLCGGRDASG-----APLADAYGLLMHRNGQWEWTLAP 252 (885)
Q Consensus 183 ~~d~~t~~~~W~~l~~~g~~P~~r~~hsa-----~~~~~~~l~v~GG~~~~~-----~~l~dv~~l~~~~~~~W~w~~~~ 252 (885)
.||+.+. .++- .-.+|+- .+..+|.-++.++.++.- ....++..|..++++.|.|..-+
T Consensus 197 ~wDprt~----~kim-------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 197 LWDPRTC----KKIM-------KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred Eeccccc----ccee-------eeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 8999886 2221 1113432 233566666666654431 12345667788888999888773
No 238
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=39.38 E-value=51 Score=36.52 Aligned_cols=69 Identities=22% Similarity=0.137 Sum_probs=38.3
Q ss_pred eEEEecCCCCHH------HHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCC-------------hHHHHHHHHHHHhc
Q 002740 583 VKVFGDLHGQFG------DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQH-------------SLETITLLLALKIE 643 (885)
Q Consensus 583 i~vvGDiHG~~~------~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~-------------s~evl~ll~~lk~~ 643 (885)
|+-+-|+||++. .+..+++...-.... .....-+|..||.+.-++. ..-++.+|-++.
T Consensus 3 IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~-~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g-- 79 (313)
T cd08162 3 LLHTSDGESGLLAEDDAPNFSALVNALKDEAAA-EYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALG-- 79 (313)
T ss_pred EEEecccccCccccCCHHHHHHHHHHHHHhhhc-cCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccC--
Confidence 667889999964 333334433211000 0011256669999865432 344555555653
Q ss_pred CCCcEEEeccCCcc
Q 002740 644 YPENVHLIRGNHEA 657 (885)
Q Consensus 644 ~p~~v~llrGNHE~ 657 (885)
-=.+..||||.
T Consensus 80 ---~Da~tlGNHEF 90 (313)
T cd08162 80 ---VQAIALGNHEF 90 (313)
T ss_pred ---CcEEecccccc
Confidence 33577999995
No 239
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=39.10 E-value=7.9e+02 Score=29.85 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=52.4
Q ss_pred CCccceeEEEEE---CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceE
Q 002740 256 PSPRYQHAAVFV---GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHA 332 (885)
Q Consensus 256 P~~R~~hs~~~~---~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs 332 (885)
|..+...+...+ ++++++.- ....+++.++.++.+..++....... ..+ .-++-.
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s---------~~~~~le~~el~~ps~kel~~~~~~~-----------~~~--~I~~l~ 482 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVS---------KNIFSLEEFELETPSFKELKSIQSQA-----------KCP--SISRLV 482 (691)
T ss_pred hhhhccceeeEEEecCceEEEEe---------cccceeEEEEecCcchhhhhcccccc-----------CCC--cceeEE
Confidence 455544444333 56777764 11346888888888888887764320 011 222233
Q ss_pred EEEECCEEEEEcCCCCCCCCCcEEEeeCCCCCcCCCCcccc
Q 002740 333 SASIGVRIYIYGGLKGDILLDDFLVAENSPFQSDVNSPLLT 373 (885)
Q Consensus 333 ~~~~~~~IyI~GG~~~~~~~~D~~~ld~~~~~~~~~~~~~~ 373 (885)
....++.|.+.+++ .+++++++++.+.....+...
T Consensus 483 ~SsdG~yiaa~~t~------g~I~v~nl~~~~~~~l~~rln 517 (691)
T KOG2048|consen 483 VSSDGNYIAAISTR------GQIFVYNLETLESHLLKVRLN 517 (691)
T ss_pred EcCCCCEEEEEecc------ceEEEEEcccceeecchhccC
Confidence 33446788888853 358888888877665544433
No 240
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=38.55 E-value=1.4e+02 Score=32.92 Aligned_cols=209 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEeccccCCCCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE----CC
Q 002740 35 LTAVAATKTTGPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV----GT 110 (885)
Q Consensus 35 ~~~i~~~~~~~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~----~~ 110 (885)
+..+ ++..+|-|=.+ +++-++|..+.... ...++|+..++ ++
T Consensus 202 ClQY------DD~kiVSGlrD-------------------nTikiWD~n~~~c~---------~~L~GHtGSVLCLqyd~ 247 (499)
T KOG0281|consen 202 CLQY------DDEKIVSGLRD-------------------NTIKIWDKNSLECL---------KILTGHTGSVLCLQYDE 247 (499)
T ss_pred EEEe------cchhhhccccc-------------------CceEEeccccHHHH---------HhhhcCCCcEEeeeccc
Q ss_pred EEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE----CCcEEEEEecCCCCcccCcEEEEeC
Q 002740 111 MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV----SQRYLVSVSGNDGKRVLSDAWALDT 186 (885)
Q Consensus 111 ~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~----~~~~lyv~GG~~~~~~~ndv~~~d~ 186 (885)
+++|-|. ....+-++|..+ +.+...-.+|+-+++ .+++++. ...-..+-++|+
T Consensus 248 rviisGS------SDsTvrvWDv~t-----------ge~l~tlihHceaVLhlrf~ng~mvt------cSkDrsiaVWdm 304 (499)
T KOG0281|consen 248 RVIVSGS------SDSTVRVWDVNT-----------GEPLNTLIHHCEAVLHLRFSNGYMVT------CSKDRSIAVWDM 304 (499)
T ss_pred eEEEecC------CCceEEEEeccC-----------CchhhHHhhhcceeEEEEEeCCEEEE------ecCCceeEEEec
Q ss_pred CCCCeeEEEcCCCCCCCCccccceEEEe---cCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeE
Q 002740 187 AQKPYVWQRLNPEGDRPSARMYATASAR---SDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHA 263 (885)
Q Consensus 187 ~t~~~~W~~l~~~g~~P~~r~~hsa~~~---~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs 263 (885)
... +.++.. ..-.+|-|++- .+.++++ +..+.....+|..... +.+.. ...-+.+-+
T Consensus 305 ~sp----s~it~r----rVLvGHrAaVNvVdfd~kyIV----sASgDRTikvW~~st~-----efvRt---l~gHkRGIA 364 (499)
T KOG0281|consen 305 ASP----TDITLR----RVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWSTSTC-----EFVRT---LNGHKRGIA 364 (499)
T ss_pred cCc----hHHHHH----HHHhhhhhheeeeccccceEE----EecCCceEEEEeccce-----eeehh---hhcccccce
Q ss_pred EEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEE
Q 002740 264 AVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIY 343 (885)
Q Consensus 264 ~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~ 343 (885)
++.+.++++|.|-. .+++-.+|++.+.-..+-.- --.--.++-++++=+|-
T Consensus 365 ClQYr~rlvVSGSS---------DntIRlwdi~~G~cLRvLeG--------------------HEeLvRciRFd~krIVS 415 (499)
T KOG0281|consen 365 CLQYRDRLVVSGSS---------DNTIRLWDIECGACLRVLEG--------------------HEELVRCIRFDNKRIVS 415 (499)
T ss_pred ehhccCeEEEecCC---------CceEEEEeccccHHHHHHhc--------------------hHHhhhheeecCceeee
Q ss_pred cCCCCC
Q 002740 344 GGLKGD 349 (885)
Q Consensus 344 GG~~~~ 349 (885)
||++|.
T Consensus 416 GaYDGk 421 (499)
T KOG0281|consen 416 GAYDGK 421 (499)
T ss_pred ccccce
No 241
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=37.98 E-value=77 Score=34.02 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=42.5
Q ss_pred CeEEEecCCCCHH--HHHHHHHHhCCCCCCCCcceeeEEEeccccCCC-CChHHHHHHHHHHHhcCCCcEEEeccCCccc
Q 002740 582 PVKVFGDLHGQFG--DLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRG-QHSLETITLLLALKIEYPENVHLIRGNHEAA 658 (885)
Q Consensus 582 ~i~vvGDiHG~~~--~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG-~~s~evl~ll~~lk~~~p~~v~llrGNHE~~ 658 (885)
+|.++|||=|.-. .+.+.+..+......+ -++-.||..--| .-+-++...|..+.. .++.+ ||||.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D-----~vi~NgEn~~gg~gl~~~~~~~L~~~G~----D~iTl-GNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKID-----FVIANGENAAGGKGITPKIAKELLSAGV----DVITM-GNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCC-----EEEECCccccCCCCCCHHHHHHHHhcCC----CEEEe-cccccC
Confidence 4789999999863 3345554443211110 345589998666 367788888888753 34444 999863
No 242
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=37.98 E-value=48 Score=40.67 Aligned_cols=69 Identities=17% Similarity=0.084 Sum_probs=40.7
Q ss_pred ecCCeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChH-----------
Q 002740 579 LRAPVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSL----------- 631 (885)
Q Consensus 579 ~~~~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~----------- 631 (885)
+.-.|+-..|+||++.. +..+++...-.. ...-+|-.||++.-.+.+-
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-----~n~llvD~GD~~qGsp~~~~~~~~~~~~g~ 98 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-----KNSVLVDNGDLIQGSPLGDYMAAKGLKAGD 98 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-----CCEEEEECCCcCCCchhhhhhhhccccCCC
Confidence 34568889999999743 223333332111 1124666999997555321
Q ss_pred --HHHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 632 --ETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 632 --evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
-++.+|-.| +.=....||||.
T Consensus 99 ~~p~i~amN~l-----gyDa~tlGNHEF 121 (649)
T PRK09420 99 VHPVYKAMNTL-----DYDVGNLGNHEF 121 (649)
T ss_pred cchHHHHHHhc-----CCcEEeccchhh
Confidence 245555555 345678899996
No 243
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=36.24 E-value=48 Score=40.53 Aligned_cols=66 Identities=20% Similarity=0.082 Sum_probs=37.9
Q ss_pred CeEEEecCCCCHHH----------------HHHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------HH
Q 002740 582 PVKVFGDLHGQFGD----------------LMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS-------------LE 632 (885)
Q Consensus 582 ~i~vvGDiHG~~~~----------------L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s-------------~e 632 (885)
.|+-..||||++.. +..+++...-... ..-+|-.||.+.--+.+ .-
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~-----n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p 78 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVK-----NSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHP 78 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCC-----CeEEEECCCcCCCccchhhhhhccccCCCcCh
Confidence 47888999999753 2333333321111 12456699999754432 22
Q ss_pred HHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 633 TITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 633 vl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
++.+|-.|. -=....||||.
T Consensus 79 ~~~~mN~lg-----yDa~tlGNHEF 98 (626)
T TIGR01390 79 VYKAMNLLK-----YDVGNLGNHEF 98 (626)
T ss_pred HHHHHhhcC-----ccEEecccccc
Confidence 445554443 34577899995
No 244
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=35.22 E-value=51 Score=43.48 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=16.5
Q ss_pred HHHHHHHHHH-cCCeEEEEecccc
Q 002740 767 PDRVSDFCKR-NKLQLIIRAHECV 789 (885)
Q Consensus 767 ~~~~~~fl~~-~~l~~iiR~H~~~ 789 (885)
++++.+..++ -++++||-||+-.
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~ 279 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHG 279 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcc
Confidence 3455667755 4899999999744
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=34.65 E-value=7.6e+02 Score=28.39 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=68.4
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECC-cEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQ-RYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPS 204 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~-~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~ 204 (885)
..+|++|+.+.+ =..+. ..+. ...+.....+ ..+++....++ ..++|.+|+.+. ....+....
T Consensus 220 ~~I~~~dl~~g~--~~~l~---~~~g--~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~--~~~~lt~~~---- 283 (427)
T PRK02889 220 PVVYVHDLATGR--RRVVA---NFKG--SNSAPAWSPDGRTLAVALSRDG---NSQIYTVNADGS--GLRRLTQSS---- 283 (427)
T ss_pred cEEEEEECCCCC--EEEee---cCCC--CccceEECCCCCEEEEEEccCC---CceEEEEECCCC--CcEECCCCC----
Confidence 459999998754 23331 1111 1112223333 34544333333 367999998776 555554321
Q ss_pred ccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCC
Q 002740 205 ARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRA 283 (885)
Q Consensus 205 ~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~ 283 (885)
.. ........|+..+++.... .+ ..++|.++.... ..+-+...+ .+.....+. +++.+++....+ +
T Consensus 284 ~~-~~~~~wSpDG~~l~f~s~~-~g--~~~Iy~~~~~~g-~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~-g-- 350 (427)
T PRK02889 284 GI-DTEPFFSPDGRSIYFTSDR-GG--APQIYRMPASGG-AAQRVTFTG-----SYNTSPRISPDGKLLAYISRVG-G-- 350 (427)
T ss_pred CC-CcCeEEcCCCCEEEEEecC-CC--CcEEEEEECCCC-ceEEEecCC-----CCcCceEECCCCCEEEEEEccC-C--
Confidence 11 1122344566544443211 11 236777776533 333332211 111122222 444333433221 1
Q ss_pred ccCCCcEEEEECCCCeEEEcc
Q 002740 284 IEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~ 304 (885)
...++++|+.+.+...+.
T Consensus 351 ---~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 351 ---AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ---cEEEEEEECCCCCeEEcc
Confidence 136999999988877664
No 246
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=32.03 E-value=7.8e+02 Score=27.71 Aligned_cols=122 Identities=11% Similarity=0.196 Sum_probs=62.8
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCcc--EEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCC
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAH--AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGP 152 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~h--a~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~ 152 (885)
+-.|.++..+..|--.-+ ...-.- .....++.++.-|+.. ..+.++...++.-+|.......
T Consensus 86 D~AflW~~~~ge~~~elt-----gHKDSVt~~~FshdgtlLATGdms------G~v~v~~~stg~~~~~~~~e~~----- 149 (399)
T KOG0296|consen 86 DLAFLWDISTGEFAGELT-----GHKDSVTCCSFSHDGTLLATGDMS------GKVLVFKVSTGGEQWKLDQEVE----- 149 (399)
T ss_pred ceEEEEEccCCcceeEec-----CCCCceEEEEEccCceEEEecCCC------ccEEEEEcccCceEEEeecccC-----
Confidence 345677888777543211 111222 2233467888888864 3366777766655665541111
Q ss_pred ccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccC
Q 002740 153 RYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGR 225 (885)
Q Consensus 153 R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~ 225 (885)
.-.-..+ ....++++|-.++ .+|+|.+.+. .-.++-.....| .-+...+.+|+..+.|-.
T Consensus 150 --dieWl~WHp~a~illAG~~DG-----svWmw~ip~~--~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 150 --DIEWLKWHPRAHILLAGSTDG-----SVWMWQIPSQ--ALCKVMSGHNSP----CTCGEFIPDGKRILTGYD 210 (399)
T ss_pred --ceEEEEecccccEEEeecCCC-----cEEEEECCCc--ceeeEecCCCCC----cccccccCCCceEEEEec
Confidence 1111111 2236777777666 5999999875 444443331111 223334566666665543
No 247
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=31.74 E-value=7.8e+02 Score=27.62 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=60.2
Q ss_pred cCcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCc---CCCCCccccEEEEEecCCccEEEEEeecC-C
Q 002740 74 TNSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGI---GPAGHSTDDLYVLDLTNDKFKWHRVVVQG-Q 148 (885)
Q Consensus 74 ~~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~---~~~~~~~~dl~~~D~~~~~~~W~~l~~~~-~ 148 (885)
+..+|++|..+++-.-.- +..-.++.+..- ++.+|+..=. ...+...+-+..||..+-..++....+.. .
T Consensus 16 ~~rv~viD~d~~k~lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp SEEEEEEETTTTEEEEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred cceEEEEECCCCcEEEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 468999999988765332 233444444333 3477765532 23445667789999999555665542211 1
Q ss_pred CCCCccccEEEE-ECCcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 149 GPGPRYGHVMDL-VSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 149 ~p~~R~~h~~~~-~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
....-+.+.... -+++++||+-= ..-..|-+.|++..
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~N~----TPa~SVtVVDl~~~ 128 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQNF----TPATSVTVVDLAAK 128 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEEEE----SSSEEEEEEETTTT
T ss_pred heecccccceEEccCCcEEEEEcc----CCCCeEEEEECCCC
Confidence 111112222333 35567887543 24567888898887
No 248
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=31.65 E-value=64 Score=34.62 Aligned_cols=65 Identities=28% Similarity=0.297 Sum_probs=40.3
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCCCCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCC-CcEEEeccCCcccc
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYP-ENVHLIRGNHEAAD 659 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p-~~v~llrGNHE~~~ 659 (885)
.+++.|+|.|....+.. ..|+.+ -++-+||+..-|. +-||+.+=-.+ ...| ++=+.|+||||.-.
T Consensus 62 ~r~VcisdtH~~~~~i~------~~p~gD------vlihagdfT~~g~-~~ev~~fn~~~-gslph~yKIVIaGNHELtF 127 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDIN------DIPDGD------VLIHAGDFTNLGL-PEEVIKFNEWL-GSLPHEYKIVIAGNHELTF 127 (305)
T ss_pred eEEEEecCcccccCccc------cCCCCc------eEEeccCCccccC-HHHHHhhhHHh-ccCcceeeEEEeeccceee
Confidence 45899999998766543 234433 4577999987654 44555443222 1222 34578999999853
No 249
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=30.74 E-value=1.9e+02 Score=29.28 Aligned_cols=89 Identities=22% Similarity=0.298 Sum_probs=59.2
Q ss_pred eeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCCcccchhhhcCChH---HHHHHh---------CCCcchhh
Q 002740 615 IDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRL---ECIERM---------GENDGIWA 682 (885)
Q Consensus 615 ~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~---e~~~~~---------~~~~~~~~ 682 (885)
..+|||| .|-+.-|.+.||-+|+.+|-.+.++ .|+-|.+..++...|.. +|..++ ++..-..+
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~ltSv 114 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSWLTSV 114 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCceEEE-EecCchhhHHHHHhhhccccccchhheecchhhhhhhhhhhhH
Confidence 3689988 5899999999999999999766655 89999988776554431 111111 11111235
Q ss_pred hhhhhhhccCCceEEEEeCeEEEecC
Q 002740 683 WTRFNQLFNCLPLAALIEKKIICMHG 708 (885)
Q Consensus 683 ~~~~~~~f~~LP~~~~i~~~il~vHg 708 (885)
|..+..+.-.+++...+--+++.+-|
T Consensus 115 ~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 115 FTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHheEEEecCCCEEEECC
Confidence 56666666677777666555666666
No 250
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.25 E-value=7.7e+02 Score=27.12 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=32.7
Q ss_pred CCCCCccccEEEEEecCCccEE--EEEe----ecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCC
Q 002740 119 GPAGHSTDDLYVLDLTNDKFKW--HRVV----VQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTA 187 (885)
Q Consensus 119 ~~~~~~~~dl~~~D~~~~~~~W--~~l~----~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~ 187 (885)
.......+.+.|+|+.+++ | .... ..+.....|..-.++...++.+-.++|. +.+.|+.
T Consensus 166 ~~~~~g~~~i~~~Dli~~~--~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rGG--------i~vgnP~ 230 (339)
T PF09910_consen 166 NNFHKGVSGIHCLDLISGK--WVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRGG--------IFVGNPY 230 (339)
T ss_pred cccccCCceEEEEEccCCe--EEEEecccccCCCCCceEeeccccEEEEeeeEEEEEecc--------EEEeCCC
Confidence 4444556789999999955 7 3332 2233333444445555555444444442 5666664
No 251
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=29.78 E-value=57 Score=34.90 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHcCCeEEEEeccccccceEEecCCeEEEEeecccc
Q 002740 766 GPDRVSDFCKRNKLQLIIRAHECVMDGFERFAQGQLITLFSATNY 810 (885)
Q Consensus 766 g~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~~~~~~itvfSa~~y 810 (885)
....+.+||+.+|..+ -+|++.+||.|++++=+|+||---..
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri~~~ 180 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRIFKV 180 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEEEec
Confidence 4567889999999877 69999999999999988888765433
No 252
>PTZ00421 coronin; Provisional
Probab=29.62 E-value=1e+03 Score=28.23 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=27.3
Q ss_pred EEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCC
Q 002740 165 YLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDA 227 (885)
Q Consensus 165 ~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~ 227 (885)
.+++.||.++ .+.+||+.+.. .-..+... ...-.+.....++.+++.|+.++
T Consensus 139 ~iLaSgs~Dg-----tVrIWDl~tg~-~~~~l~~h-----~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 139 NVLASAGADM-----VVNVWDVERGK-AVEVIKCH-----SDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred CEEEEEeCCC-----EEEEEECCCCe-EEEEEcCC-----CCceEEEEEECCCCEEEEecCCC
Confidence 4666777654 47888887751 11122111 11122333345777788787543
No 253
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.47 E-value=8e+02 Score=27.03 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCCCCCCCC---CCCcccccccCcEEEEECCCCc----EEEecCCCCCCcccCccEEEE----ECCEEEEE
Q 002740 47 RLILFGGATAIEGGATSS---APGIRLAGVTNSVHLYDVLTRK----WTRIRPAGEPPSPRAAHAAAA----VGTMVVFQ 115 (885)
Q Consensus 47 ~lylfGG~~~~~~~~~~~---~~~~~~~~~~~dv~~yD~~t~~----W~~l~~~~~~P~~R~~ha~~~----~~~~iyv~ 115 (885)
..+.|||+...-..+.-. -..+.+.--.+-|+.||...++ |++---. |..-++-.+-. .++.+++.
T Consensus 47 d~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~---~~~WaGEVSdIlYdP~~D~LLlA 123 (339)
T PF09910_consen 47 DFIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHD---KTKWAGEVSDILYDPYEDRLLLA 123 (339)
T ss_pred ceEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCC---ccccccchhheeeCCCcCEEEEE
Confidence 456689976433211100 0122333346789999998876 6542211 11112211111 15688886
Q ss_pred cCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeE--
Q 002740 116 GGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVW-- 193 (885)
Q Consensus 116 GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W-- 193 (885)
=+- +...--+|.+|.++.. =+++. ..|.. -.+ .+.+..+ ||=++-..-++.+.+||+.++ +|
T Consensus 124 R~D---Gh~nLGvy~ldr~~g~--~~~L~---~~ps~---KG~-~~~D~a~--F~i~~~~~g~~~i~~~Dli~~--~~~~ 187 (339)
T PF09910_consen 124 RAD---GHANLGVYSLDRRTGK--AEKLS---SNPSL---KGT-LVHDYAC--FGINNFHKGVSGIHCLDLISG--KWVI 187 (339)
T ss_pred ecC---CcceeeeEEEcccCCc--eeecc---CCCCc---Cce-EeeeeEE--EeccccccCCceEEEEEccCC--eEEE
Confidence 542 3333458888888765 44442 22222 111 2333122 333444556788999999999 88
Q ss_pred EEcCCC----CCCCCccccceEEEecCCEEEEEcc
Q 002740 194 QRLNPE----GDRPSARMYATASARSDGMFLLCGG 224 (885)
Q Consensus 194 ~~l~~~----g~~P~~r~~hsa~~~~~~~l~v~GG 224 (885)
+..... +.....|....++...+..+..++|
T Consensus 188 e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~rG 222 (339)
T PF09910_consen 188 ESFDVSLSVDGGPVIRPELGAMASAYNRLFAFVRG 222 (339)
T ss_pred EecccccCCCCCceEeeccccEEEEeeeEEEEEec
Confidence 443322 2222333444445555555444444
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=29.27 E-value=9.3e+02 Score=27.75 Aligned_cols=192 Identities=11% Similarity=0.083 Sum_probs=97.4
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEEE-CCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAAV-GTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~~-~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
.++|++|+.+++=+.+..... ........- +.++++.-... ...++|.+|+.+.. +.++.. .+.
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g----~~~~~~~SPDG~~la~~~~~~----g~~~Iy~~dl~~g~--~~~LT~---~~~-- 277 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG----MLVVSDVSKDGSKLLLTMAPK----GQPDIYLYDTNTKT--LTQITN---YPG-- 277 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC----cEEeeEECCCCCEEEEEEccC----CCcEEEEEECCCCc--EEEccc---CCC--
Confidence 579999999887777753211 111111222 34565543321 13689999998854 777732 111
Q ss_pred cccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCC--
Q 002740 154 YGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGA-- 230 (885)
Q Consensus 154 ~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~-- 230 (885)
........ ++..|++..... -..++|.+|+.+. +.+.+...+. +.. ....++..+++-.......
T Consensus 278 ~d~~p~~SPDG~~I~F~Sdr~---g~~~Iy~~dl~~g--~~~rlt~~g~------~~~-~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 278 IDVNGNFVEDDKRIVFVSDRL---GYPNIFMKKLNSG--SVEQVVFHGK------NNS-SVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred ccCccEECCCCCEEEEEECCC---CCceEEEEECCCC--CeEeCccCCC------cCc-eECCCCCEEEEEEcCCCcccC
Confidence 12222233 333555544332 2368999999887 6667654322 122 3345554444443322111
Q ss_pred -cccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccC
Q 002740 231 -PLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNG 305 (885)
Q Consensus 231 -~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~ 305 (885)
...+++.++.... .+..+... .....-...-+++.+++-...+ + ...++.++.....=..++.
T Consensus 346 ~~~~~I~v~d~~~g---~~~~LT~~---~~~~~p~~SPDG~~I~f~~~~~-~-----~~~L~~~~l~g~~~~~l~~ 409 (419)
T PRK04043 346 KNTFNLYLISTNSD---YIRRLTAN---GVNQFPRFSSDGGSIMFIKYLG-N-----QSALGIIRLNYNKSFLFPL 409 (419)
T ss_pred CCCcEEEEEECCCC---CeEECCCC---CCcCCeEECCCCCEEEEEEccC-C-----cEEEEEEecCCCeeEEeec
Confidence 2357888887655 34444322 1121112222555444433221 1 2458888888766555553
No 255
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.07 E-value=7.3e+02 Score=26.48 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.4
Q ss_pred CCcccCccEEEEECCEEEEEcCcCCCCCccccEEEEEecCCccE-EEEEe
Q 002740 96 PPSPRAAHAAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFK-WHRVV 144 (885)
Q Consensus 96 ~P~~R~~ha~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~-W~~l~ 144 (885)
.|.+-.+.+.++.++.+|+--. .++++.+||+.+++.. |..++
T Consensus 65 Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~ 108 (250)
T PF02191_consen 65 LPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELP 108 (250)
T ss_pred EeceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECC
Confidence 3455566677778888887544 4577999999997755 66663
No 256
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=28.95 E-value=56 Score=29.90 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=51.8
Q ss_pred CCCceEEeCHHHHHHHHHHcCCeEEEEeccccccceEEe------cCCeEEEEeec---ccccCCCCCeEEEEEEcCcc
Q 002740 758 RGPGLVTFGPDRVSDFCKRNKLQLIIRAHECVMDGFERF------AQGQLITLFSA---TNYCGTANNAGAILVVGRGL 827 (885)
Q Consensus 758 rg~~~~~fg~~~~~~fl~~~~l~~iiR~H~~~~~G~~~~------~~~~~itvfSa---~~y~~~~~n~ga~l~~~~~~ 827 (885)
|.+|-+.+|.+.+.+-+++..++++|.+-++-+++-+.+ ++-.+++.|+. ..-||. .+.+++.+.|+.+
T Consensus 13 ~rAGklv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 13 KKAGKLLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred HHhCCeeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 344557899999999999999999999999998875532 34567888876 245775 3477777777654
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=28.63 E-value=9.2e+02 Score=27.50 Aligned_cols=102 Identities=8% Similarity=0.090 Sum_probs=51.9
Q ss_pred CcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCE-EEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCC
Q 002740 179 SDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGM-FLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPS 257 (885)
Q Consensus 179 ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~-l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~ 257 (885)
..+|++|+.++ +-+.+.... ..........++. +++....++ ..++|.++.... ....+.... .
T Consensus 223 ~~l~~~~l~~g--~~~~l~~~~-----g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~---~~~~lt~~~-~ 287 (430)
T PRK00178 223 PRIFVQNLDTG--RREQITNFE-----GLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASR---QLSRVTNHP-A 287 (430)
T ss_pred CEEEEEECCCC--CEEEccCCC-----CCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCC---CeEEcccCC-C
Confidence 47999999887 555554321 1112233345554 443222111 257898888755 233332211 1
Q ss_pred ccceeEEEEE-C-CEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEcc
Q 002740 258 PRYQHAAVFV-G-ARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 258 ~R~~hs~~~~-~-~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
......+. + .+|++..... + ...++.+|..+.++..+.
T Consensus 288 --~~~~~~~spDg~~i~f~s~~~--g-----~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 288 --IDTEPFWGKDGRTLYFTSDRG--G-----KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred --CcCCeEECCCCCEEEEEECCC--C-----CceEEEEECCCCCEEEee
Confidence 11112222 3 4555543221 1 246999999998887765
No 258
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=28.44 E-value=7.5e+02 Score=26.40 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=82.4
Q ss_pred CCEEEEEcCcCCCCCccccEEEEEecCC---ccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEe
Q 002740 109 GTMVVFQGGIGPAGHSTDDLYVLDLTND---KFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALD 185 (885)
Q Consensus 109 ~~~iyv~GG~~~~~~~~~dl~~~D~~~~---~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d 185 (885)
.+++|++.|.... .++.|....+ ..++.+. -.+|.+-.|...++.++..+|--. ..+++.+||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~---~~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRT---YKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceE---EEEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 5688888886432 4555533211 0011111 134455555566666664555433 357899999
Q ss_pred CCCCCee-EEEcCCCCCC---CCccccceEE---EecCCEEEEEccCCCCCCcccceEEEEcCCC-CeeEEEeCCCCCCC
Q 002740 186 TAQKPYV-WQRLNPEGDR---PSARMYATAS---ARSDGMFLLCGGRDASGAPLADAYGLLMHRN-GQWEWTLAPGVAPS 257 (885)
Q Consensus 186 ~~t~~~~-W~~l~~~g~~---P~~r~~hsa~---~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~-~~W~w~~~~~~~P~ 257 (885)
+.++... |..++..+.. |-....++-+ +-.+|..+|+.-....+. --+=.++..+- -.=+|... .+.
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~--ivvskld~~tL~v~~tw~T~---~~k 170 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN--IVVSKLDPETLSVEQTWNTS---YPK 170 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc--EEEEeeCcccCceEEEEEec---cCc
Confidence 9998666 7777543321 2222233332 223343333333222221 00112222110 01134432 123
Q ss_pred ccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEcc
Q 002740 258 PRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 258 ~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
+..+. +..+-|.||++....... ..-.++||+.+.+=..+.
T Consensus 171 ~~~~n-aFmvCGvLY~~~s~~~~~-----~~I~yafDt~t~~~~~~~ 211 (250)
T PF02191_consen 171 RSAGN-AFMVCGVLYATDSYDTRD-----TEIFYAFDTYTGKEEDVS 211 (250)
T ss_pred hhhcc-eeeEeeEEEEEEECCCCC-----cEEEEEEECCCCceecee
Confidence 33333 444578999997654433 234789999987655433
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.32 E-value=9.7e+02 Score=27.63 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=75.7
Q ss_pred cEEEEEecCCccEEEEEeecCCCCCCccccEEEEE-CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCc
Q 002740 127 DLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV-SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSA 205 (885)
Q Consensus 127 dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~-~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~ 205 (885)
++|++|+.+.+ =..+. ..+. ... ..... ++..+++.-..++ -.++|.+|+.+. .+..++... .
T Consensus 214 ~Iyv~dl~tg~--~~~lt---~~~g-~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g--~~~~LT~~~---~- 277 (419)
T PRK04043 214 TLYKYNLYTGK--KEKIA---SSQG-MLV-VSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTK--TLTQITNYP---G- 277 (419)
T ss_pred EEEEEECCCCc--EEEEe---cCCC-cEE-eeEECCCCCEEEEEEccCC---CcEEEEEECCCC--cEEEcccCC---C-
Confidence 79999998754 33442 1111 111 11122 3334544333222 368999999887 788876431 1
Q ss_pred cccceEEEecCC-EEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECC-EEEEEcccCCCCCC
Q 002740 206 RMYATASARSDG-MFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGA-RLHVTGGALRGGRA 283 (885)
Q Consensus 206 r~~hsa~~~~~~-~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~-~i~V~GG~~~~~~~ 283 (885)
.........|| .|++...+.+ ..++|.++.... .. ..+... ..+.. ...-++ .|...... .....
T Consensus 278 -~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g-~~--~rlt~~---g~~~~-~~SPDG~~Ia~~~~~-~~~~~ 344 (419)
T PRK04043 278 -IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSG-SV--EQVVFH---GKNNS-SVSTYKNYIVYSSRE-TNNEF 344 (419)
T ss_pred -ccCccEECCCCCEEEEEECCCC----CceEEEEECCCC-Ce--EeCccC---CCcCc-eECCCCCEEEEEEcC-CCccc
Confidence 12223344555 5555543321 357898888654 22 222211 11222 222244 44444332 21111
Q ss_pred ccCCCcEEEEECCCCeEEEccCC
Q 002740 284 IEGEAAVAVLDTAAGVWLDRNGL 306 (885)
Q Consensus 284 ~~~~~~v~~yD~~t~~W~~v~~~ 306 (885)
......++++|+++..++.+...
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCC
Confidence 11135799999999998887653
No 260
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=28.12 E-value=2.5e+02 Score=32.35 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=32.2
Q ss_pred cEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceE---EEecCCEEEEEccCCCC
Q 002740 156 HVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATA---SARSDGMFLLCGGRDAS 228 (885)
Q Consensus 156 h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa---~~~~~~~l~v~GG~~~~ 228 (885)
++++....+++++.|+..+ ++|++.+.++ .-+... .+-|.+. ....|+++++.||.++.
T Consensus 85 ~al~s~n~G~~l~ag~i~g-----~lYlWelssG----~LL~v~-----~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISG-----NLYLWELSSG----ILLNVL-----SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeecCCCceEEEeecccC-----cEEEEEeccc----cHHHHH-----HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4555555555555444544 5777777775 111111 1112222 24588899999997654
No 261
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.81 E-value=8e+02 Score=26.49 Aligned_cols=59 Identities=15% Similarity=0.294 Sum_probs=42.2
Q ss_pred ccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcC
Q 002740 126 DDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLN 197 (885)
Q Consensus 126 ~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~ 197 (885)
.-+-..|+.+.+..|+.+ -..|...++.++++ + +|+|-+++ -+|.++..++.--|....
T Consensus 33 ~~~~avd~~sG~~~We~i------lg~RiE~sa~vvgd-f-VV~GCy~g-----~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAI------LGVRIECSAIVVGD-F-VVLGCYSG-----GLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEecCCCCcEEeehh------hCceeeeeeEEECC-E-EEEEEccC-----cEEEEEecchhheeeeee
Confidence 347888999988899887 45677777767776 4 66776654 478888777654676654
No 262
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.28 E-value=6.7e+02 Score=30.94 Aligned_cols=123 Identities=15% Similarity=0.234 Sum_probs=65.9
Q ss_pred EECCCCcEEEecCCCCC-Cccc-------Ccc-----EEEEECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeec
Q 002740 80 YDVLTRKWTRIRPAGEP-PSPR-------AAH-----AAAAVGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQ 146 (885)
Q Consensus 80 yD~~t~~W~~l~~~~~~-P~~R-------~~h-----a~~~~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~ 146 (885)
+--.+..|..++..+.. |.|- -+| +.++-.+.+.++-|-+ +++-.++.++ .+..+-
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t--~kciRT--- 409 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDT--LKCIRT--- 409 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC------CcEEEEEccC--cceeEE---
Confidence 33344568888774322 3332 122 2333345555554422 3467777776 334433
Q ss_pred CCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCC
Q 002740 147 GQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRD 226 (885)
Q Consensus 147 ~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~ 226 (885)
.+.. |-+++..+.+..++|.|+.+| .+.+||+.+. .-++... ..-..--+.....+++-++.||.+
T Consensus 410 --i~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS~----~l~Eti~--AHdgaIWsi~~~pD~~g~vT~saD 475 (888)
T KOG0306|consen 410 --ITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLASA----SLVETIR--AHDGAIWSISLSPDNKGFVTGSAD 475 (888)
T ss_pred --eccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeehh----hhhhhhh--ccccceeeeeecCCCCceEEecCC
Confidence 2222 778887887778888998876 4778888764 1221110 001111233345777888888765
Q ss_pred C
Q 002740 227 A 227 (885)
Q Consensus 227 ~ 227 (885)
.
T Consensus 476 k 476 (888)
T KOG0306|consen 476 K 476 (888)
T ss_pred c
Confidence 4
No 263
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=26.28 E-value=95 Score=39.05 Aligned_cols=68 Identities=21% Similarity=0.111 Sum_probs=38.9
Q ss_pred cCCeEEEecCCCCHHHH----------------HHHHHHhCCCCCCCCcceeeEEEeccccCCCCCh-------------
Q 002740 580 RAPVKVFGDLHGQFGDL----------------MRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHS------------- 630 (885)
Q Consensus 580 ~~~i~vvGDiHG~~~~L----------------~~il~~~g~~~~~~~~~~~~~vfLGDyvDRG~~s------------- 630 (885)
.-.|+-..||||++... ..+++...-.. ...-+|..||++.--+..
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-----~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~ 189 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-----PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGE 189 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-----CCEEEEecCCCCCCCcccchhhhccccccCc
Confidence 34588899999997432 22233321110 112466699998654322
Q ss_pred -HHHHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 631 -LETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 631 -~evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
.-++.+|-.| +.=....||||.
T Consensus 190 ~~P~i~amN~L-----GyDA~tLGNHEF 212 (814)
T PRK11907 190 QHPMYAALEAL-----GFDAGTLGNHEF 212 (814)
T ss_pred chHHHHHHhcc-----CCCEEEechhhc
Confidence 1255555555 344678899996
No 264
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=26.23 E-value=4.1e+02 Score=26.76 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=59.8
Q ss_pred ccccCHHHHHHHHHHHHHHHhcCCceeeecCCeEEEecCCCCHHHHHHHHHHhCCCCC----------------------
Q 002740 551 RFFLDSYEVGELCYAAEQIFMQEPTVLQLRAPVKVFGDLHGQFGDLMRLFDEYGFPST---------------------- 608 (885)
Q Consensus 551 ~~~~~~~~~~~l~~~~~~~~~~ep~~l~~~~~i~vvGDiHG~~~~L~~il~~~g~~~~---------------------- 608 (885)
...+++++|.+-|.+..+.+.++-.= ...++||=++|.+--+-.++..+.++.+
T Consensus 9 evLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~ 84 (178)
T COG0634 9 EVLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKIL 84 (178)
T ss_pred eEeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEe
Confidence 46789999998888877777665322 5688999999999877777777766542
Q ss_pred ---CCCcceeeEEEeccccCCCCChHHHHHHHH
Q 002740 609 ---AGDITYIDYLFLGDYVDRGQHSLETITLLL 638 (885)
Q Consensus 609 ---~~~~~~~~~vfLGDyvDRG~~s~evl~ll~ 638 (885)
+.++...+++.+=|++|-|.-=-.+..+|.
T Consensus 85 kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~ 117 (178)
T COG0634 85 KDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLK 117 (178)
T ss_pred cccccCCCCCeEEEEecccccChhHHHHHHHHH
Confidence 112334479999999999865445554443
No 265
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.78 E-value=4.7e+02 Score=29.68 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=65.7
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccEEEEE--CCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCC
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLV--SQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDR 202 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~--~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~ 202 (885)
.+.+.++|..+.+ .-.++.+ .-.-|..... +++++|+.+. + ..+-++|+.+... =.++.
T Consensus 15 ~~~v~viD~~t~~-~~~~i~~------~~~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~~-v~~i~----- 75 (369)
T PF02239_consen 15 SGSVAVIDGATNK-VVARIPT------GGAPHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGKV-VATIK----- 75 (369)
T ss_dssp GTEEEEEETTT-S-EEEEEE-------STTEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSSE-EEEEE-----
T ss_pred CCEEEEEECCCCe-EEEEEcC------CCCceeEEEecCCCCEEEEEcC-C-----CeEEEEECCcccE-EEEEe-----
Confidence 3568899988744 1334422 1112554444 3568998753 3 3588999998721 11222
Q ss_pred CCccccceEEEecCCEEEEEccCCCCCCcccceEEEEcCCCCeeEEEeCCCCC---CCccceeEEEEECCEEEEEcccCC
Q 002740 203 PSARMYATASARSDGMFLLCGGRDASGAPLADAYGLLMHRNGQWEWTLAPGVA---PSPRYQHAAVFVGARLHVTGGALR 279 (885)
Q Consensus 203 P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~~~W~w~~~~~~~---P~~R~~hs~~~~~~~i~V~GG~~~ 279 (885)
.....+......+|++++.+... .+.+-.+|..+...-..+...+.. +.+|...-.+..+...||+-=
T Consensus 76 -~G~~~~~i~~s~DG~~~~v~n~~-----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--- 146 (369)
T PF02239_consen 76 -VGGNPRGIAVSPDGKYVYVANYE-----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--- 146 (369)
T ss_dssp --SSEEEEEEE--TTTEEEEEEEE-----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE---
T ss_pred -cCCCcceEEEcCCCCEEEEEecC-----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE---
Confidence 22233445555677666555432 344556666554333444443221 334442222223455566522
Q ss_pred CCCCccCCCcEEEEECCCC
Q 002740 280 GGRAIEGEAAVAVLDTAAG 298 (885)
Q Consensus 280 ~~~~~~~~~~v~~yD~~t~ 298 (885)
.+...+|+.|....
T Consensus 147 -----kd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 147 -----KDTGEIWVVDYSDP 160 (369)
T ss_dssp -----TTTTEEEEEETTTS
T ss_pred -----ccCCeEEEEEeccc
Confidence 12456899987665
No 266
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=25.49 E-value=1.3e+02 Score=36.15 Aligned_cols=37 Identities=24% Similarity=0.091 Sum_probs=23.2
Q ss_pred eEEEeccccCCCCCh-----HHHHHHHHHHHhcCCCcEEEeccCCcc
Q 002740 616 DYLFLGDYVDRGQHS-----LETITLLLALKIEYPENVHLIRGNHEA 657 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s-----~evl~ll~~lk~~~p~~v~llrGNHE~ 657 (885)
-+|..||.+...+.+ ...+.+|-++ +--.+..||||.
T Consensus 52 l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~-----g~Da~~lGNHEF 93 (550)
T TIGR01530 52 LVLHAGDAIIGTLYFTLFGGRADAALMNAA-----GFDFFTLGNHEF 93 (550)
T ss_pred EEEECCCCCCCccchhhcCCHHHHHHHhcc-----CCCEEEeccccc
Confidence 566799998654322 2334444444 345678999996
No 267
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=25.43 E-value=6.8e+02 Score=27.36 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCCCCCCCCCCCCccccccc-CcEEEEECCCC-----cEEEecCCCCCCcccCccEEEEECCEEEEEcCcC
Q 002740 46 PRLILFGGATAIEGGATSSAPGIRLAGVT-NSVHLYDVLTR-----KWTRIRPAGEPPSPRAAHAAAAVGTMVVFQGGIG 119 (885)
Q Consensus 46 ~~lylfGG~~~~~~~~~~~~~~~~~~~~~-~dv~~yD~~t~-----~W~~l~~~~~~P~~R~~ha~~~~~~~iyv~GG~~ 119 (885)
...+++|-.....+... .. +.+++|+.... +++.+.... .+-.-++++.+++++++.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~----------~~~Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~V~ai~~~~~~lv~~~g-- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPE----------PSSGRILVFEISESPENNFKLKLIHSTE---VKGPVTAICSFNGRLVVAVG-- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-----------S-EEEEEEEECSS-----EEEEEEEEE---ESS-EEEEEEETTEEEEEET--
T ss_pred cCEEEEEeccccccccc----------ccCcEEEEEEEEcccccceEEEEEEEEe---ecCcceEhhhhCCEEEEeec--
Confidence 56777776654443211 23 78999999884 666664332 22335667777898777666
Q ss_pred CCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEE
Q 002740 120 PAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVS 168 (885)
Q Consensus 120 ~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv 168 (885)
+.+.+|++..++ ++... +....+-+..++.+.++ ++++
T Consensus 107 ------~~l~v~~l~~~~-~l~~~---~~~~~~~~i~sl~~~~~-~I~v 144 (321)
T PF03178_consen 107 ------NKLYVYDLDNSK-TLLKK---AFYDSPFYITSLSVFKN-YILV 144 (321)
T ss_dssp ------TEEEEEEEETTS-SEEEE---EEE-BSSSEEEEEEETT-EEEE
T ss_pred ------CEEEEEEccCcc-cchhh---heecceEEEEEEecccc-EEEE
Confidence 348888888754 35555 22333335556656665 6665
No 268
>PTZ00420 coronin; Provisional
Probab=25.32 E-value=1.3e+03 Score=28.00 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=33.0
Q ss_pred EEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 111 MVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 111 ~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
.+++.||.+ ..+.+||+.+....+ .+. .+ ..-.++....++.+++.++.++ .+.+||+.+.
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~-~i~----~~--~~V~SlswspdG~lLat~s~D~-----~IrIwD~Rsg 199 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAF-QIN----MP--KKLSSLKWNIKGNLLSGTCVGK-----HMHIIDPRKQ 199 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEE-EEe----cC--CcEEEEEECCCCCEEEEEecCC-----EEEEEECCCC
Confidence 455556532 348888998744222 221 11 1123333334456667676543 5888999875
No 269
>PTZ00421 coronin; Provisional
Probab=25.25 E-value=1.2e+03 Score=27.63 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=33.6
Q ss_pred CEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCccccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCC
Q 002740 110 TMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQK 189 (885)
Q Consensus 110 ~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~ 189 (885)
+.+++.||. ...+.+||+.+.+ .-..+ ..... .-.++....++.+++.|+.++ .+.+||+.+.
T Consensus 138 ~~iLaSgs~------DgtVrIWDl~tg~-~~~~l---~~h~~--~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg 200 (493)
T PTZ00421 138 MNVLASAGA------DMVVNVWDVERGK-AVEVI---KCHSD--QITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDG 200 (493)
T ss_pred CCEEEEEeC------CCEEEEEECCCCe-EEEEE---cCCCC--ceEEEEEECCCCEEEEecCCC-----EEEEEECCCC
Confidence 356666663 2348888987743 11122 11111 112233333456777777665 4788998876
No 270
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=25.06 E-value=7.5e+02 Score=25.28 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=37.6
Q ss_pred ccCcEEEEECCCCcEEEecCCCC--CCcccCccEEEEEC--CEEEEEcCcCCCCCccccEEEEEecCCc
Q 002740 73 VTNSVHLYDVLTRKWTRIRPAGE--PPSPRAAHAAAAVG--TMVVFQGGIGPAGHSTDDLYVLDLTNDK 137 (885)
Q Consensus 73 ~~~dv~~yD~~t~~W~~l~~~~~--~P~~R~~ha~~~~~--~~iyv~GG~~~~~~~~~dl~~~D~~~~~ 137 (885)
-.+++|.+|..++.|..+..... --.|+ -+.-++ +.++++|-..+.-.--..||+|++.++.
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~ 151 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGN 151 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCc
Confidence 47999999999999887743322 22334 223333 3666666422111222469999999865
No 271
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=24.34 E-value=1.3e+02 Score=31.55 Aligned_cols=60 Identities=27% Similarity=0.337 Sum_probs=33.6
Q ss_pred CCcEEEeccCCcccchhhhcCChHHHHHHhCCCcchhhhhhhhhhccCCceEEEE-eCeEEEecCCCCCC
Q 002740 645 PENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNCLPLAALI-EKKIICMHGGIGRS 713 (885)
Q Consensus 645 p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~~~~~~~~~~~~~~~f~~LP~~~~i-~~~il~vHgGi~~~ 713 (885)
-++|++|-||||.-. | |-+..-..+..-.+ ...| .....||++-.- +.+|+--|-||-.+
T Consensus 127 nknvvvlagnhein~-n---gny~arlanhkls~-gDTY----nlIKtldVC~YD~erkvltsHHGIird 187 (318)
T PF13258_consen 127 NKNVVVLAGNHEINF-N---GNYMARLANHKLSA-GDTY----NLIKTLDVCNYDPERKVLTSHHGIIRD 187 (318)
T ss_pred ccceEEEecCceecc-C---chHHHHHhhCCCCc-cchh----hccccccccccCcchhhhhcccCceec
Confidence 368999999999743 2 22222222221111 1223 344567777443 34788888888654
No 272
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=23.53 E-value=1e+02 Score=37.04 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHHHHHc---CCeEEEEecccc
Q 002740 771 SDFCKRN---KLQLIIRAHECV 789 (885)
Q Consensus 771 ~~fl~~~---~l~~iiR~H~~~ 789 (885)
.+++++. ++++||=||+-.
T Consensus 235 ~~la~~~~~~~IDvIlgGHsH~ 256 (551)
T PRK09558 235 VEMARSLPAGGLDMIVGGHSQD 256 (551)
T ss_pred HHHHHhCCccCceEEEeCCCCc
Confidence 3455655 799999999864
No 273
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=23.47 E-value=93 Score=33.60 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=32.2
Q ss_pred eEEEeccccCCCCChHHHH-HHHHHHHhcCCCcEEEeccCCcccchhhhcCChHHHHHHh
Q 002740 616 DYLFLGDYVDRGQHSLETI-TLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERM 674 (885)
Q Consensus 616 ~~vfLGDyvDRG~~s~evl-~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~ 674 (885)
+++|+||+| |.-..+.| ..|-.||.+++.. ++-.|=|...- -+|...++.+.+
T Consensus 2 ~ilfiGDi~--G~~Gr~~l~~~L~~lk~~~~~D--~vIaNgEn~~g--G~Gi~~~~~~~L 55 (266)
T TIGR00282 2 KFLFIGDVY--GKAGRKIVKNNLPQLKSKYQAD--LVIANGENTTH--GKGLTLKIYEFL 55 (266)
T ss_pred eEEEEEecC--CHHHHHHHHHHHHHHHHhCCCC--EEEEcCcccCC--CCCCCHHHHHHH
Confidence 799999999 44455554 5677788887655 44456666531 134444444433
No 274
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=22.98 E-value=1.4e+02 Score=34.18 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCeEEEEecccc
Q 002740 769 RVSDFCKRNKLQLIIRAHECV 789 (885)
Q Consensus 769 ~~~~fl~~~~l~~iiR~H~~~ 789 (885)
.++-+|+++++++.|=||+-.
T Consensus 239 ~L~PLL~ky~VdlYisGHDH~ 259 (394)
T PTZ00422 239 YLLPLLKDAQVDLYISGYDRN 259 (394)
T ss_pred HHHHHHHHcCcCEEEEccccc
Confidence 678899999999999999864
No 275
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=22.84 E-value=1.1e+03 Score=26.56 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=93.7
Q ss_pred cccEEEEEecCCccEEEEEeecCCCCCCccccE-EEEECCcEEEEEecCCCCcc------cCcEEEEeCCCCCeeEE--E
Q 002740 125 TDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGHV-MDLVSQRYLVSVSGNDGKRV------LSDAWALDTAQKPYVWQ--R 195 (885)
Q Consensus 125 ~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h~-~~~~~~~~lyv~GG~~~~~~------~ndv~~~d~~t~~~~W~--~ 195 (885)
...++++|+.+++..-..+ + +...+ ++-..++..+++...+.... -..||+..+.+. .-+ .
T Consensus 149 ~~~l~v~Dl~tg~~l~d~i------~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~--~~~d~l 218 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDGI------E--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP--QSEDEL 218 (414)
T ss_dssp EEEEEEEETTTTEEEEEEE------E--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS---GGG-EE
T ss_pred eEEEEEEECCCCcCcCCcc------c--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC--hHhCee
Confidence 3468999998864221121 1 22222 44444434444445444323 678999998876 222 2
Q ss_pred cCCCCCCCCccc-cceEEEecCCEEEEEccCCCCCCcccceEEEEcCCC----CeeEEEeCCCCCCCccceeEEEEECCE
Q 002740 196 LNPEGDRPSARM-YATASARSDGMFLLCGGRDASGAPLADAYGLLMHRN----GQWEWTLAPGVAPSPRYQHAAVFVGAR 270 (885)
Q Consensus 196 l~~~g~~P~~r~-~hsa~~~~~~~l~v~GG~~~~~~~l~dv~~l~~~~~----~~W~w~~~~~~~P~~R~~hs~~~~~~~ 270 (885)
+-.. +.... +-.+....+++++++.-.... ..+++|.++.... ..|..+... ..-..+.+...++.
T Consensus 219 vfe~---~~~~~~~~~~~~s~d~~~l~i~~~~~~--~~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 219 VFEE---PDEPFWFVSVSRSKDGRYLFISSSSGT--SESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDR 289 (414)
T ss_dssp EEC----TTCTTSEEEEEE-TTSSEEEEEEESSS--SEEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTE
T ss_pred EEee---cCCCcEEEEEEecCcccEEEEEEEccc--cCCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCE
Confidence 2111 12222 323334455554443332222 1478999988763 344443331 12222333344889
Q ss_pred EEEEcccCCCCCCccCCCcEEEEECCCCe---EEE-ccCCcccCCCCCCCCCCCCCcCcccccceEEEEECCEEEEEcCC
Q 002740 271 LHVTGGALRGGRAIEGEAAVAVLDTAAGV---WLD-RNGLVTSSRTSKGHGEHDPSLELMRRCRHASASIGVRIYIYGGL 346 (885)
Q Consensus 271 i~V~GG~~~~~~~~~~~~~v~~yD~~t~~---W~~-v~~~~~~~~~~~~~~~~~~~~~p~~R~~hs~~~~~~~IyI~GG~ 346 (885)
+|+.-.... ....+..+++.+.. |.. +..... ...--.+...+++|++.-=.
T Consensus 290 ~yi~Tn~~a------~~~~l~~~~l~~~~~~~~~~~l~~~~~------------------~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 290 LYILTNDDA------PNGRLVAVDLADPSPAEWWTVLIPEDE------------------DVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp EEEEE-TT-------TT-EEEEEETTSTSGGGEEEEEE--SS------------------SEEEEEEEEETTEEEEEEEE
T ss_pred EEEeeCCCC------CCcEEEEecccccccccceeEEcCCCC------------------ceeEEEEEEECCEEEEEEEE
Confidence 998755222 13568899988775 664 332211 22334555667887776544
Q ss_pred CCCCCCCcEEEeeCC
Q 002740 347 KGDILLDDFLVAENS 361 (885)
Q Consensus 347 ~~~~~~~D~~~ld~~ 361 (885)
++ ..-+.+++..
T Consensus 346 ~~---~~~l~v~~~~ 357 (414)
T PF02897_consen 346 NG---SSRLRVYDLD 357 (414)
T ss_dssp TT---EEEEEEEETT
T ss_pred CC---ccEEEEEECC
Confidence 43 3345666666
No 276
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.81 E-value=1.3e+03 Score=26.90 Aligned_cols=128 Identities=19% Similarity=0.263 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCCcccccccCcEEEEECCCC-cEEEecCCCCCCcccCccEEEEE--CCEEEEEcCcCCC
Q 002740 45 GPRLILFGGATAIEGGATSSAPGIRLAGVTNSVHLYDVLTR-KWTRIRPAGEPPSPRAAHAAAAV--GTMVVFQGGIGPA 121 (885)
Q Consensus 45 ~~~lylfGG~~~~~~~~~~~~~~~~~~~~~~dv~~yD~~t~-~W~~l~~~~~~P~~R~~ha~~~~--~~~iyv~GG~~~~ 121 (885)
++.+++-||+++ .|..||..+. .|..--..+ .|.. .+..+ +..|.-.||
T Consensus 165 ~~hivvtGsYDg-------------------~vrl~DtR~~~~~v~elnhg-~pVe----~vl~lpsgs~iasAgG---- 216 (487)
T KOG0310|consen 165 NDHIVVTGSYDG-------------------KVRLWDTRSLTSRVVELNHG-CPVE----SVLALPSGSLIASAGG---- 216 (487)
T ss_pred CCeEEEecCCCc-------------------eEEEEEeccCCceeEEecCC-Ccee----eEEEcCCCCEEEEcCC----
Confidence 678999999874 4557788766 444222122 1111 12222 234445555
Q ss_pred CCccccEEEEEecCCccEEEEEeecCCCCCCcccc-----EEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEc
Q 002740 122 GHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPRYGH-----VMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRL 196 (885)
Q Consensus 122 ~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R~~h-----~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l 196 (885)
+.+-++|+.+.. .++..+..| ++....++.-.+-||-|+ .|-+||+. .|+.+
T Consensus 217 ----n~vkVWDl~~G~----------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd~t----~~Kvv 273 (487)
T KOG0310|consen 217 ----NSVKVWDLTTGG----------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFDTT----NYKVV 273 (487)
T ss_pred ----CeEEEEEecCCc----------eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEEcc----ceEEE
Confidence 347778887532 233333323 222223334444666665 47788843 36665
Q ss_pred CCCCCCCCccccceEEEecCCEEEEEccCC
Q 002740 197 NPEGDRPSARMYATASARSDGMFLLCGGRD 226 (885)
Q Consensus 197 ~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~ 226 (885)
.... .|.|- -++.+..++.-.+.|..+
T Consensus 274 ~s~~-~~~pv--Lsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 274 HSWK-YPGPV--LSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred Eeee-cccce--eeEEecCCCceEEEeccc
Confidence 4431 12221 233344555556666643
No 277
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=21.12 E-value=3.6e+02 Score=23.41 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=47.0
Q ss_pred CCeEEEecCCCCHHHHHHHHHHhCCC-CCCCCcceeeEEEeccccCCCCChHHHHHHHHHHHhcCCCcEEEeccCC
Q 002740 581 APVKVFGDLHGQFGDLMRLFDEYGFP-STAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNH 655 (885)
Q Consensus 581 ~~i~vvGDiHG~~~~L~~il~~~g~~-~~~~~~~~~~~vfLGDyvDRG~~s~evl~ll~~lk~~~p~~v~llrGNH 655 (885)
..+.|+=|---|.+.+..+++.+..- +.. ..++.+|+.-|+|....+....+..+...+...+++...|+
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~-----~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 82 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKG-----RIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDNP 82 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTS-----EEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSBT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCC-----cEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCCC
Confidence 45677778777888888887776321 111 16788999999999888877777777766666766655544
No 278
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=20.76 E-value=9.9e+02 Score=25.08 Aligned_cols=212 Identities=15% Similarity=0.183 Sum_probs=93.8
Q ss_pred CCcEEEecCCCCCC--cccCccEEEEE--CCEEEEEc--CcCCCCCccccE-EEEEecCCccEEEEEee-c-C-CCCCCc
Q 002740 84 TRKWTRIRPAGEPP--SPRAAHAAAAV--GTMVVFQG--GIGPAGHSTDDL-YVLDLTNDKFKWHRVVV-Q-G-QGPGPR 153 (885)
Q Consensus 84 t~~W~~l~~~~~~P--~~R~~ha~~~~--~~~iyv~G--G~~~~~~~~~dl-~~~D~~~~~~~W~~l~~-~-~-~~p~~R 153 (885)
..+|+........+ ..+....+.+. ++.|+++. +..........+ +....+.. -+|..... . + ......
T Consensus 29 G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G-~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 29 GKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGG-KTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp TTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTT-SS-EEEEEEHHHCCCSCEE
T ss_pred CCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCC-CCCCCccccccccccceec
Confidence 46799865443333 22333333333 67777775 222111111122 24444422 34877642 1 1 111111
Q ss_pred cccE-EEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEE-EecCCEEEEEccCCCCCCc
Q 002740 154 YGHV-MDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATAS-ARSDGMFLLCGGRDASGAP 231 (885)
Q Consensus 154 ~~h~-~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~-~~~~~~l~v~GG~~~~~~~ 231 (885)
.... ...+.++.+++..-.........+..+..... -+|+...... +.....+.+. ...++.++++--.. ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G-~tW~~~~~~~--~~~~~~e~~~~~~~dG~l~~~~R~~-~~~- 182 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGG-KTWSSGSPIP--DGQGECEPSIVELPDGRLLAVFRTE-GND- 182 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTT-SSEEEEEECE--CSEEEEEEEEEEETTSEEEEEEEEC-SST-
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCC-ceeecccccc--ccCCcceeEEEECCCCcEEEEEEcc-CCC-
Confidence 1222 23444556666521111111223333443322 3798876542 2223444444 34788888776432 111
Q ss_pred ccceEEEEcCC-CCeeEEEeCCCCCCCccceeEEEEE-CCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEccCCcc
Q 002740 232 LADAYGLLMHR-NGQWEWTLAPGVAPSPRYQHAAVFV-GARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRNGLVT 308 (885)
Q Consensus 232 l~dv~~l~~~~-~~~W~w~~~~~~~P~~R~~hs~~~~-~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~~~~~ 308 (885)
.++...... ..+|+-...... |.+......+.. ++.++++..... .. ....+++-.-...+|.....+..
T Consensus 183 --~~~~~~S~D~G~TWs~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-~r---~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 183 --DIYISRSTDGGRTWSPPQPTNL-PNPNSSISLVRLSDGRLLLVYNNPD-GR---SNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp --EEEEEEESSTTSS-EEEEEEEC-SSCCEEEEEEECTTSEEEEEEECSS-TS---EEEEEEEECTTCEEEEEEEEEEE
T ss_pred --cEEEEEECCCCCcCCCceeccc-CcccCCceEEEcCCCCEEEEEECCC-CC---CceEEEEEeCCCCcCCccEEEeC
Confidence 344443333 346765432222 444444444443 567777766211 11 12345444455789998877744
No 279
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=20.51 E-value=1.2e+03 Score=25.98 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=23.8
Q ss_pred cccEEEEEecC-CccEEEEEeecCCCCCCccccEEEEEC---Cc-EEEEEecCCCCcccCcEEEEeCCC
Q 002740 125 TDDLYVLDLTN-DKFKWHRVVVQGQGPGPRYGHVMDLVS---QR-YLVSVSGNDGKRVLSDAWALDTAQ 188 (885)
Q Consensus 125 ~~dl~~~D~~~-~~~~W~~l~~~~~~p~~R~~h~~~~~~---~~-~lyv~GG~~~~~~~ndv~~~d~~t 188 (885)
...+|++|+.+ ....|+ +.+..... .... .++++ ++ .=+++.|- ....||++|+..
T Consensus 180 ~~~lyi~d~~t~G~l~~~-i~~~~~~~-gl~~--~~~~D~d~DG~~D~vYaGD----l~GnlwR~dl~~ 240 (335)
T PF05567_consen 180 GAALYILDADTTGALIKK-IDVPGGSG-GLSS--PAVVDSDGDGYVDRVYAGD----LGGNLWRFDLSS 240 (335)
T ss_dssp -EEEEEEETTT---EEEE-EEE--STT--EEE--EEEE-TTSSSEE-EEEEEE----TTSEEEEEE--T
T ss_pred CcEEEEEECCCCCceEEE-EecCCCCc-cccc--cEEEeccCCCeEEEEEEEc----CCCcEEEEECCC
Confidence 45799999998 654443 43222111 2222 12221 11 22333442 235799999975
No 280
>PRK03629 tolB translocation protein TolB; Provisional
Probab=20.08 E-value=1.3e+03 Score=26.37 Aligned_cols=191 Identities=11% Similarity=0.121 Sum_probs=91.1
Q ss_pred CcEEEEECCCCcEEEecCCCCCCcccCccEEEE-ECCEEEEEcCcCCCCCccccEEEEEecCCccEEEEEeecCCCCCCc
Q 002740 75 NSVHLYDVLTRKWTRIRPAGEPPSPRAAHAAAA-VGTMVVFQGGIGPAGHSTDDLYVLDLTNDKFKWHRVVVQGQGPGPR 153 (885)
Q Consensus 75 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~ha~~~-~~~~iyv~GG~~~~~~~~~dl~~~D~~~~~~~W~~l~~~~~~p~~R 153 (885)
..+|++|+.+++-+.+.... .. ....... .+.+|++..... ...++|.+|+.+.+ ..++.. + ..
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~---~~-~~~~~~SPDG~~La~~~~~~----g~~~I~~~d~~tg~--~~~lt~-~--~~-- 287 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFP---RH-NGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQ--IRQVTD-G--RS-- 287 (429)
T ss_pred cEEEEEECCCCCeEEccCCC---CC-cCCeEECCCCCEEEEEEcCC----CCcEEEEEECCCCC--EEEccC-C--CC--
Confidence 56899999888776665321 11 1111111 234566543321 12359999998754 555521 1 11
Q ss_pred cccEEEEECCcEEEEEecCCCCcccCcEEEEeCCCCCeeEEEcCCCCCCCCccccceEEEecCCEEEEEccCCCCCCccc
Q 002740 154 YGHVMDLVSQRYLVSVSGNDGKRVLSDAWALDTAQKPYVWQRLNPEGDRPSARMYATASARSDGMFLLCGGRDASGAPLA 233 (885)
Q Consensus 154 ~~h~~~~~~~~~lyv~GG~~~~~~~ndv~~~d~~t~~~~W~~l~~~g~~P~~r~~hsa~~~~~~~l~v~GG~~~~~~~l~ 233 (885)
.........++..++|...... ..++|.+|+.+. .-..+...+ .. ........++..+++.+.... ..
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g--~~~~lt~~~----~~-~~~~~~SpDG~~Ia~~~~~~g---~~ 355 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGG--APQRITWEG----SQ-NQDADVSSDGKFMVMVSSNGG---QQ 355 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCC--CceEEEEECCCC--CeEEeecCC----CC-ccCEEECCCCCEEEEEEccCC---Cc
Confidence 1122223333344444443221 247999999876 455554321 11 122334456655555443222 24
Q ss_pred ceEEEEcCCCCeeEEEeCCCCCCCccceeEEEEECCEEEEEcccCCCCCCccCCCcEEEEECCCCeEEEcc
Q 002740 234 DAYGLLMHRNGQWEWTLAPGVAPSPRYQHAAVFVGARLHVTGGALRGGRAIEGEAAVAVLDTAAGVWLDRN 304 (885)
Q Consensus 234 dv~~l~~~~~~~W~w~~~~~~~P~~R~~hs~~~~~~~i~V~GG~~~~~~~~~~~~~v~~yD~~t~~W~~v~ 304 (885)
+++.++.... . +..+.... ........-+++++++.+..+.. ..+++.+.....=..+.
T Consensus 356 ~I~~~dl~~g-~--~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~------~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 356 HIAKQDLATG-G--VQVLTDTF---LDETPSIAPNGTMVIYSSSQGMG------SVLNLVSTDGRFKARLP 414 (429)
T ss_pred eEEEEECCCC-C--eEEeCCCC---CCCCceECCCCCEEEEEEcCCCc------eEEEEEECCCCCeEECc
Confidence 6788877654 3 33332211 11111122367777776643321 24667777655444443
Done!