Query 002741
Match_columns 885
No_of_seqs 508 out of 4169
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0127 Nucleolar protein fibr 100.0 9.5E-63 2.1E-67 529.5 39.4 512 121-691 5-543 (678)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-48 4E-53 463.3 43.5 369 123-691 2-376 (562)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-43 2.7E-48 411.8 42.9 447 121-673 2-478 (481)
4 TIGR01628 PABP-1234 polyadenyl 100.0 4E-44 8.8E-49 426.1 35.2 327 1-513 32-367 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7E-40 1.5E-44 368.1 37.5 345 121-511 3-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-40 7.6E-45 370.5 33.5 312 216-673 3-347 (352)
7 KOG0123 Polyadenylate-binding 100.0 9.8E-39 2.1E-43 352.6 30.1 359 123-691 3-361 (369)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.4E-36 3E-41 352.9 38.6 336 10-510 37-480 (481)
9 KOG0110 RNA-binding protein (R 100.0 1.7E-37 3.8E-42 346.2 27.8 313 216-682 385-700 (725)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 9.7E-37 2.1E-41 350.8 32.8 302 119-600 56-364 (578)
11 KOG0145 RNA-binding protein EL 100.0 2.2E-36 4.7E-41 299.0 25.0 301 213-673 38-356 (360)
12 KOG0145 RNA-binding protein EL 100.0 2.9E-36 6.2E-41 298.1 24.4 316 121-510 41-358 (360)
13 KOG0117 Heterogeneous nuclear 100.0 7E-36 1.5E-40 316.5 24.3 250 117-512 79-333 (506)
14 KOG0123 Polyadenylate-binding 100.0 4.5E-36 9.7E-41 331.5 23.0 312 1-510 30-349 (369)
15 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-34 2.5E-39 333.6 30.5 279 181-674 18-306 (578)
16 KOG0117 Heterogeneous nuclear 100.0 3.6E-34 7.9E-39 303.6 25.6 262 213-688 80-344 (506)
17 KOG0127 Nucleolar protein fibr 100.0 8.9E-34 1.9E-38 306.2 25.2 337 217-673 6-376 (678)
18 TIGR01622 SF-CC1 splicing fact 100.0 1.4E-32 3E-37 319.8 33.1 322 214-674 87-447 (457)
19 TIGR01622 SF-CC1 splicing fact 100.0 3.5E-32 7.6E-37 316.3 35.2 337 118-509 86-447 (457)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-31 3.3E-36 315.3 30.6 277 117-509 171-501 (509)
21 TIGR01645 half-pint poly-U bin 100.0 1.8E-30 3.9E-35 299.1 34.7 179 215-510 106-284 (612)
22 TIGR01645 half-pint poly-U bin 100.0 6.3E-30 1.4E-34 294.6 35.6 170 119-297 105-285 (612)
23 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.9E-30 4.1E-35 306.0 32.0 309 213-675 172-502 (509)
24 KOG0148 Apoptosis-promoting RN 100.0 5.6E-31 1.2E-35 263.0 20.5 232 120-510 5-238 (321)
25 KOG0144 RNA-binding protein CU 100.0 3.7E-30 8E-35 271.8 23.7 376 120-510 33-504 (510)
26 KOG0110 RNA-binding protein (R 100.0 4.3E-31 9.2E-36 295.3 16.6 366 11-511 246-694 (725)
27 KOG0144 RNA-binding protein CU 100.0 8.5E-30 1.8E-34 269.0 22.3 173 214-513 32-209 (510)
28 KOG0148 Apoptosis-promoting RN 100.0 8.8E-29 1.9E-33 247.4 18.6 178 426-678 63-241 (321)
29 TIGR01659 sex-lethal sex-letha 100.0 3.1E-27 6.7E-32 260.2 21.6 172 212-511 103-276 (346)
30 TIGR01659 sex-lethal sex-letha 100.0 5.5E-27 1.2E-31 258.2 21.9 172 421-674 103-274 (346)
31 KOG1190 Polypyrimidine tract-b 99.9 1.5E-23 3.2E-28 220.6 28.1 417 119-673 26-489 (492)
32 KOG0124 Polypyrimidine tract-b 99.9 2.8E-23 6E-28 214.7 23.2 178 216-510 113-290 (544)
33 KOG0147 Transcriptional coacti 99.9 2.4E-24 5.3E-29 235.7 11.5 326 216-673 179-526 (549)
34 KOG0147 Transcriptional coacti 99.9 2E-23 4.3E-28 228.6 16.7 328 116-508 174-526 (549)
35 KOG1456 Heterogeneous nuclear 99.9 1.6E-20 3.4E-25 195.4 36.5 442 117-673 27-487 (494)
36 KOG0131 Splicing factor 3b, su 99.9 5.4E-23 1.2E-27 195.3 12.2 171 213-510 6-177 (203)
37 KOG0124 Polypyrimidine tract-b 99.9 1.3E-21 2.8E-26 202.4 22.6 169 119-296 111-290 (544)
38 KOG4212 RNA-binding protein hn 99.9 1.4E-21 2.9E-26 206.6 22.3 242 119-506 42-290 (608)
39 KOG0131 Splicing factor 3b, su 99.9 4.5E-22 9.8E-27 189.1 12.1 169 120-297 8-178 (203)
40 KOG0146 RNA-binding protein ET 99.8 8.6E-20 1.9E-24 182.2 14.5 279 199-511 2-366 (371)
41 KOG4212 RNA-binding protein hn 99.8 4.8E-18 1E-22 180.0 22.9 212 5-293 80-291 (608)
42 KOG0109 RNA-binding protein LA 99.8 1.4E-19 3E-24 183.5 10.6 147 123-296 4-150 (346)
43 KOG0109 RNA-binding protein LA 99.8 1.6E-19 3.5E-24 183.0 10.7 149 217-511 3-151 (346)
44 KOG4211 Splicing factor hnRNP- 99.8 1.5E-17 3.2E-22 180.5 25.3 161 119-294 8-180 (510)
45 KOG1190 Polypyrimidine tract-b 99.8 2.6E-17 5.6E-22 173.8 19.2 329 215-674 27-372 (492)
46 KOG0146 RNA-binding protein ET 99.8 3.5E-18 7.6E-23 170.8 11.9 226 424-672 18-362 (371)
47 KOG4211 Splicing factor hnRNP- 99.7 6.5E-17 1.4E-21 175.5 21.1 301 215-655 9-342 (510)
48 KOG4205 RNA-binding protein mu 99.7 7.2E-17 1.6E-21 172.7 11.5 175 215-513 5-179 (311)
49 KOG0120 Splicing factor U2AF, 99.7 1.4E-15 3.1E-20 170.0 16.4 305 214-675 173-492 (500)
50 KOG4205 RNA-binding protein mu 99.7 3.7E-16 8E-21 167.3 10.8 170 120-300 5-180 (311)
51 KOG1456 Heterogeneous nuclear 99.6 1.7E-14 3.6E-19 150.8 22.4 304 213-673 28-361 (494)
52 KOG4206 Spliceosomal protein s 99.6 2.7E-14 5.7E-19 142.2 17.8 206 217-508 10-220 (221)
53 KOG0120 Splicing factor U2AF, 99.6 4.9E-15 1.1E-19 165.8 13.8 274 116-509 170-491 (500)
54 KOG4206 Spliceosomal protein s 99.6 3E-14 6.6E-19 141.8 17.0 202 425-672 9-219 (221)
55 KOG0105 Alternative splicing f 99.6 1.7E-14 3.7E-19 137.4 14.4 154 119-291 4-185 (241)
56 KOG0105 Alternative splicing f 99.5 1.2E-13 2.5E-18 131.8 15.6 169 424-657 5-173 (241)
57 PLN03134 glycine-rich RNA-bind 99.5 4.5E-14 9.7E-19 136.8 11.9 84 423-511 32-115 (144)
58 PLN03134 glycine-rich RNA-bind 99.5 6E-14 1.3E-18 136.0 11.6 85 213-297 31-115 (144)
59 KOG1365 RNA-binding protein Fu 99.5 5.3E-13 1.2E-17 140.1 16.0 285 214-657 58-347 (508)
60 KOG1365 RNA-binding protein Fu 99.5 1E-12 2.2E-17 138.1 17.4 275 121-509 60-361 (508)
61 KOG1457 RNA binding protein (c 99.5 1.8E-12 3.9E-17 127.3 16.9 84 214-297 32-119 (284)
62 KOG1457 RNA binding protein (c 99.4 4.7E-12 1E-16 124.4 17.4 210 423-657 32-271 (284)
63 KOG0122 Translation initiation 99.4 5.4E-13 1.2E-17 133.3 9.5 84 213-296 186-269 (270)
64 PF00076 RRM_1: RNA recognitio 99.4 2.1E-12 4.6E-17 108.9 9.5 70 219-289 1-70 (70)
65 KOG1548 Transcription elongati 99.4 2.2E-11 4.8E-16 127.3 18.7 200 422-671 131-347 (382)
66 PF00076 RRM_1: RNA recognitio 99.4 3.1E-12 6.7E-17 107.9 10.2 70 428-503 1-70 (70)
67 KOG1548 Transcription elongati 99.4 1.5E-11 3.1E-16 128.7 16.4 166 117-296 130-352 (382)
68 KOG0122 Translation initiation 99.4 4E-12 8.6E-17 127.1 11.0 82 424-510 188-269 (270)
69 KOG0106 Alternative splicing f 99.3 2E-12 4.4E-17 130.4 8.0 168 217-508 2-169 (216)
70 KOG0149 Predicted RNA-binding 99.3 3.4E-12 7.4E-17 127.3 6.9 79 425-509 12-90 (247)
71 KOG0121 Nuclear cap-binding pr 99.3 4.1E-12 8.9E-17 114.5 6.8 79 215-293 35-113 (153)
72 KOG0106 Alternative splicing f 99.3 3.4E-12 7.5E-17 128.7 7.0 147 122-293 2-168 (216)
73 KOG0114 Predicted RNA-binding 99.3 1.1E-11 2.3E-16 107.8 8.9 83 422-512 15-97 (124)
74 COG0724 RNA-binding proteins ( 99.3 3.3E-11 7.2E-16 129.4 14.2 80 216-295 115-194 (306)
75 KOG4660 Protein Mei2, essentia 99.3 1.8E-11 3.9E-16 135.7 11.8 349 212-686 71-482 (549)
76 PF14259 RRM_6: RNA recognitio 99.3 2.7E-11 5.9E-16 102.5 10.0 70 219-289 1-70 (70)
77 PF14259 RRM_6: RNA recognitio 99.3 2.8E-11 6E-16 102.4 9.9 70 428-503 1-70 (70)
78 KOG0125 Ataxin 2-binding prote 99.3 1.3E-11 2.7E-16 128.1 8.5 102 193-296 73-174 (376)
79 KOG0121 Nuclear cap-binding pr 99.2 1.5E-11 3.3E-16 110.9 7.1 80 424-508 35-114 (153)
80 COG0724 RNA-binding proteins ( 99.2 9E-11 1.9E-15 126.1 14.0 174 425-656 115-289 (306)
81 KOG0107 Alternative splicing f 99.2 2E-11 4.3E-16 116.3 7.0 79 214-297 8-86 (195)
82 PLN03120 nucleic acid binding 99.2 6.6E-11 1.4E-15 122.6 10.7 77 425-510 4-80 (260)
83 KOG4307 RNA binding protein RB 99.2 2.1E-10 4.5E-15 128.8 14.8 164 121-296 311-514 (944)
84 PLN03120 nucleic acid binding 99.2 5.8E-11 1.3E-15 123.0 9.8 76 216-295 4-79 (260)
85 KOG0130 RNA-binding protein RB 99.2 4E-11 8.8E-16 109.0 6.8 85 212-296 68-152 (170)
86 KOG0125 Ataxin 2-binding prote 99.2 8.5E-11 1.8E-15 122.1 10.1 79 425-510 96-174 (376)
87 KOG4307 RNA binding protein RB 99.2 1.5E-09 3.3E-14 122.0 20.1 159 8-204 349-508 (944)
88 KOG0149 Predicted RNA-binding 99.2 4.2E-11 9E-16 119.6 6.3 80 214-294 10-89 (247)
89 KOG0126 Predicted RNA-binding 99.2 7.8E-12 1.7E-16 119.4 1.1 81 214-294 33-113 (219)
90 KOG0126 Predicted RNA-binding 99.2 7E-12 1.5E-16 119.7 0.7 82 424-510 34-115 (219)
91 KOG0113 U1 small nuclear ribon 99.1 1.5E-10 3.2E-15 119.0 9.9 81 423-508 99-179 (335)
92 KOG0111 Cyclophilin-type pepti 99.1 3.7E-11 7.9E-16 117.8 5.0 88 213-300 7-94 (298)
93 PLN03213 repressor of silencin 99.1 1.1E-10 2.5E-15 126.1 9.3 80 214-297 8-89 (759)
94 KOG4207 Predicted splicing fac 99.1 7.2E-11 1.6E-15 115.0 6.7 81 214-294 11-91 (256)
95 KOG0114 Predicted RNA-binding 99.1 2.5E-10 5.4E-15 99.3 9.1 83 213-298 15-97 (124)
96 KOG4207 Predicted splicing fac 99.1 1.1E-10 2.4E-15 113.8 7.1 79 425-508 13-91 (256)
97 KOG0130 RNA-binding protein RB 99.1 1.2E-10 2.5E-15 106.0 6.8 85 421-510 68-152 (170)
98 PLN03213 repressor of silencin 99.1 2.4E-10 5.2E-15 123.7 9.9 78 424-510 9-88 (759)
99 smart00362 RRM_2 RNA recogniti 99.1 4.7E-10 1E-14 94.0 9.6 72 427-505 1-72 (72)
100 KOG0108 mRNA cleavage and poly 99.1 1.5E-10 3.3E-15 129.7 7.9 83 426-513 19-101 (435)
101 smart00362 RRM_2 RNA recogniti 99.1 4.3E-10 9.3E-15 94.3 8.9 71 218-290 1-71 (72)
102 PLN03121 nucleic acid binding 99.1 3.8E-10 8.3E-15 115.0 10.0 76 215-294 4-79 (243)
103 KOG0107 Alternative splicing f 99.1 2.7E-10 5.9E-15 108.7 8.1 76 424-509 9-84 (195)
104 PLN03121 nucleic acid binding 99.1 6.4E-10 1.4E-14 113.4 10.6 77 424-509 4-80 (243)
105 KOG0113 U1 small nuclear ribon 99.1 4E-10 8.7E-15 115.8 8.6 81 214-294 99-179 (335)
106 smart00360 RRM RNA recognition 99.1 7.6E-10 1.6E-14 92.4 8.8 71 430-505 1-71 (71)
107 KOG0111 Cyclophilin-type pepti 99.0 1.4E-10 3E-15 113.8 4.3 82 425-511 10-91 (298)
108 smart00360 RRM RNA recognition 99.0 6.8E-10 1.5E-14 92.7 7.9 71 221-291 1-71 (71)
109 cd00590 RRM RRM (RNA recogniti 99.0 3.1E-09 6.6E-14 89.6 10.2 74 427-506 1-74 (74)
110 cd00590 RRM RRM (RNA recogniti 99.0 2.9E-09 6.2E-14 89.7 9.5 74 218-292 1-74 (74)
111 KOG0108 mRNA cleavage and poly 99.0 1.1E-09 2.4E-14 122.9 7.8 81 217-297 19-99 (435)
112 KOG0128 RNA-binding protein SA 98.9 4E-11 8.8E-16 138.4 -4.8 234 120-509 570-814 (881)
113 KOG4660 Protein Mei2, essentia 98.9 2.4E-08 5.1E-13 111.4 16.0 160 116-298 70-252 (549)
114 PF13893 RRM_5: RNA recognitio 98.9 5.5E-09 1.2E-13 84.2 8.1 56 233-293 1-56 (56)
115 KOG0128 RNA-binding protein SA 98.9 9.9E-11 2.2E-15 135.2 -4.1 199 13-295 616-814 (881)
116 PF13893 RRM_5: RNA recognitio 98.9 1.1E-08 2.3E-13 82.5 8.2 56 442-507 1-56 (56)
117 smart00361 RRM_1 RNA recogniti 98.9 9.7E-09 2.1E-13 86.9 8.3 61 439-504 2-69 (70)
118 KOG0129 Predicted RNA-binding 98.8 3.9E-08 8.5E-13 108.7 14.3 158 116-277 254-432 (520)
119 KOG0129 Predicted RNA-binding 98.8 6.1E-08 1.3E-12 107.3 15.4 171 212-486 255-432 (520)
120 smart00361 RRM_1 RNA recogniti 98.8 1.1E-08 2.4E-13 86.6 7.6 61 230-290 2-69 (70)
121 KOG0415 Predicted peptidyl pro 98.8 7.3E-09 1.6E-13 108.4 7.0 84 422-510 236-319 (479)
122 KOG0415 Predicted peptidyl pro 98.7 1.3E-08 2.8E-13 106.7 6.2 84 213-296 236-319 (479)
123 KOG4454 RNA binding protein (R 98.7 4.5E-09 9.9E-14 103.5 1.8 139 119-282 7-149 (267)
124 KOG4208 Nucleolar RNA-binding 98.7 5.4E-08 1.2E-12 95.9 7.4 83 214-296 47-130 (214)
125 PF04059 RRM_2: RNA recognitio 98.6 4.4E-07 9.5E-12 80.9 11.5 82 577-672 1-84 (97)
126 KOG4208 Nucleolar RNA-binding 98.6 1.3E-07 2.8E-12 93.2 8.4 83 423-510 47-130 (214)
127 KOG4210 Nuclear localization s 98.6 5.7E-08 1.2E-12 104.5 5.8 169 119-297 86-265 (285)
128 KOG0112 Large RNA-binding prot 98.6 4.3E-08 9.3E-13 114.2 4.5 162 118-297 369-532 (975)
129 KOG0226 RNA-binding proteins [ 98.5 1.2E-07 2.7E-12 95.8 5.3 160 124-293 99-267 (290)
130 KOG4661 Hsp27-ERE-TATA-binding 98.5 6.2E-07 1.3E-11 99.1 10.0 85 421-510 401-485 (940)
131 KOG0153 Predicted RNA-binding 98.5 4.8E-07 1E-11 95.4 8.7 79 422-510 225-303 (377)
132 KOG0132 RNA polymerase II C-te 98.5 2.9E-07 6.2E-12 105.8 7.6 81 422-513 418-498 (894)
133 KOG4210 Nuclear localization s 98.5 1.6E-07 3.4E-12 101.2 5.2 178 215-511 87-265 (285)
134 KOG0153 Predicted RNA-binding 98.4 5.3E-07 1.1E-11 95.1 8.1 77 213-295 225-302 (377)
135 KOG0132 RNA polymerase II C-te 98.4 3.8E-07 8.3E-12 104.8 7.7 78 215-298 420-497 (894)
136 KOG4454 RNA binding protein (R 98.4 5.5E-08 1.2E-12 96.0 0.8 80 212-293 5-84 (267)
137 KOG0226 RNA-binding proteins [ 98.4 4.7E-07 1E-11 91.7 5.3 162 427-668 98-262 (290)
138 KOG0112 Large RNA-binding prot 98.3 3.5E-07 7.6E-12 106.8 4.4 164 420-674 367-530 (975)
139 PF04059 RRM_2: RNA recognitio 98.2 6.2E-06 1.4E-10 73.5 9.0 78 217-294 2-85 (97)
140 KOG0533 RRM motif-containing p 98.2 3.5E-06 7.6E-11 87.5 8.2 84 214-298 81-164 (243)
141 KOG0533 RRM motif-containing p 98.2 4.8E-06 1E-10 86.5 8.3 82 426-513 84-165 (243)
142 KOG4676 Splicing factor, argin 98.1 1.6E-06 3.5E-11 92.4 4.3 75 218-293 9-86 (479)
143 KOG4661 Hsp27-ERE-TATA-binding 98.1 3.8E-06 8.3E-11 93.0 7.2 83 214-296 403-485 (940)
144 KOG0151 Predicted splicing reg 98.0 1.1E-05 2.3E-10 92.2 8.5 83 421-508 170-255 (877)
145 KOG0116 RasGAP SH3 binding pro 98.0 8.2E-06 1.8E-10 91.5 7.2 81 423-509 286-366 (419)
146 KOG4676 Splicing factor, argin 98.0 3.5E-06 7.6E-11 89.9 2.8 151 122-284 8-214 (479)
147 KOG4209 Splicing factor RNPS1, 98.0 1.1E-05 2.4E-10 84.1 6.4 81 213-294 98-178 (231)
148 KOG0151 Predicted splicing reg 98.0 1E-05 2.2E-10 92.3 6.5 83 213-295 171-256 (877)
149 KOG0116 RasGAP SH3 binding pro 97.9 1.6E-05 3.4E-10 89.3 6.2 79 217-296 289-367 (419)
150 KOG2193 IGF-II mRNA-binding pr 97.8 2E-06 4.3E-11 92.4 -2.8 150 123-293 3-154 (584)
151 KOG2193 IGF-II mRNA-binding pr 97.7 3.1E-06 6.7E-11 91.0 -2.5 154 217-509 2-156 (584)
152 KOG4209 Splicing factor RNPS1, 97.7 5.5E-05 1.2E-09 79.0 5.5 79 425-509 101-179 (231)
153 PF11608 Limkain-b1: Limkain b 97.6 0.00029 6.2E-09 60.0 7.9 74 578-674 3-76 (90)
154 PF08777 RRM_3: RNA binding mo 97.5 0.00017 3.7E-09 65.9 6.0 76 425-506 1-76 (105)
155 PF11608 Limkain-b1: Limkain b 97.5 0.00028 6.1E-09 60.1 6.3 68 426-508 3-75 (90)
156 PF08777 RRM_3: RNA binding mo 97.0 0.0014 3.1E-08 59.9 6.2 70 217-292 2-76 (105)
157 KOG1995 Conserved Zn-finger pr 96.8 0.00098 2.1E-08 71.7 4.2 82 424-510 65-154 (351)
158 KOG1995 Conserved Zn-finger pr 96.8 0.001 2.2E-08 71.5 4.3 85 213-297 63-155 (351)
159 COG5175 MOT2 Transcriptional r 96.8 0.0024 5.2E-08 67.4 6.7 81 425-510 114-203 (480)
160 COG5175 MOT2 Transcriptional r 96.8 0.0024 5.2E-08 67.4 6.5 82 215-296 113-203 (480)
161 KOG2416 Acinus (induces apopto 96.6 0.0093 2E-07 67.7 9.3 92 564-675 431-522 (718)
162 KOG2314 Translation initiation 96.5 0.008 1.7E-07 67.8 8.1 79 214-293 56-141 (698)
163 KOG0115 RNA-binding protein p5 96.4 0.0065 1.4E-07 62.5 6.3 79 427-507 33-111 (275)
164 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0063 1.4E-07 48.2 4.6 52 217-275 2-53 (53)
165 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.013 2.9E-07 46.4 5.9 52 122-189 2-53 (53)
166 KOG0115 RNA-binding protein p5 96.1 0.0095 2.1E-07 61.3 5.6 100 184-291 6-109 (275)
167 KOG2314 Translation initiation 96.1 0.024 5.2E-07 64.1 9.1 80 423-508 56-142 (698)
168 KOG3152 TBP-binding protein, a 96.1 0.0038 8.3E-08 64.1 2.7 73 215-287 73-157 (278)
169 PF05172 Nup35_RRM: Nup53/35/4 95.8 0.022 4.8E-07 51.3 6.4 77 215-293 5-89 (100)
170 KOG1855 Predicted RNA-binding 95.8 0.0092 2E-07 65.4 4.5 66 423-488 229-307 (484)
171 KOG3152 TBP-binding protein, a 95.8 0.0057 1.2E-07 62.9 2.6 71 426-501 75-157 (278)
172 PF08675 RNA_bind: RNA binding 95.6 0.056 1.2E-06 46.4 7.3 60 212-280 5-64 (87)
173 KOG1996 mRNA splicing factor [ 95.4 0.038 8.1E-07 57.8 7.0 78 426-508 282-365 (378)
174 KOG4849 mRNA cleavage factor I 95.4 0.012 2.6E-07 62.6 3.5 78 215-292 79-158 (498)
175 PF05172 Nup35_RRM: Nup53/35/4 95.3 0.083 1.8E-06 47.7 7.8 77 425-508 6-90 (100)
176 KOG4849 mRNA cleavage factor I 95.2 0.02 4.2E-07 61.0 4.2 75 121-204 80-156 (498)
177 KOG1996 mRNA splicing factor [ 95.0 0.045 9.7E-07 57.2 6.1 65 230-294 300-365 (378)
178 KOG2202 U2 snRNP splicing fact 95.0 0.0099 2.2E-07 61.3 1.4 62 231-293 83-145 (260)
179 KOG1855 Predicted RNA-binding 94.7 0.038 8.2E-07 60.8 4.9 69 576-657 230-309 (484)
180 KOG2416 Acinus (induces apopto 94.6 0.034 7.3E-07 63.4 4.3 79 212-296 440-522 (718)
181 PF08952 DUF1866: Domain of un 94.3 0.19 4.1E-06 48.2 8.0 74 214-296 25-107 (146)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.14 3E-06 51.5 7.2 80 215-294 6-96 (176)
183 KOG2202 U2 snRNP splicing fact 93.8 0.032 6.8E-07 57.7 1.9 63 440-508 83-146 (260)
184 PF08952 DUF1866: Domain of un 93.6 0.28 6.1E-06 47.1 7.7 73 423-509 25-106 (146)
185 PF15023 DUF4523: Protein of u 92.3 0.29 6.4E-06 46.2 5.7 71 425-508 86-160 (166)
186 PF10309 DUF2414: Protein of u 92.2 0.63 1.4E-05 38.0 6.8 54 426-487 6-62 (62)
187 PF15023 DUF4523: Protein of u 91.3 1 2.3E-05 42.6 8.1 74 576-672 85-159 (166)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 90.9 0.29 6.3E-06 49.2 4.5 80 425-509 7-97 (176)
189 PF08675 RNA_bind: RNA binding 90.5 0.64 1.4E-05 40.1 5.5 58 577-657 8-65 (87)
190 KOG2068 MOT2 transcription fac 90.0 0.12 2.5E-06 55.8 0.8 80 426-510 78-163 (327)
191 PF10309 DUF2414: Protein of u 89.5 1.1 2.4E-05 36.6 5.9 53 217-278 6-62 (62)
192 KOG2068 MOT2 transcription fac 88.6 0.22 4.7E-06 53.8 1.6 82 215-296 76-163 (327)
193 KOG4285 Mitotic phosphoprotein 88.5 1.2 2.7E-05 47.2 7.0 74 216-297 197-271 (350)
194 KOG2591 c-Mpl binding protein, 86.1 1.3 2.9E-05 50.5 6.0 65 577-661 175-239 (684)
195 KOG2135 Proteins containing th 85.9 0.49 1.1E-05 53.0 2.5 77 422-510 369-446 (526)
196 KOG2135 Proteins containing th 85.8 0.43 9.3E-06 53.5 2.0 75 216-297 372-447 (526)
197 KOG2591 c-Mpl binding protein, 85.6 3.2 7E-05 47.6 8.6 93 184-289 149-245 (684)
198 PF04847 Calcipressin: Calcipr 85.5 1.3 2.9E-05 44.7 5.2 62 229-296 8-71 (184)
199 KOG0804 Cytoplasmic Zn-finger 84.1 3.1 6.7E-05 46.7 7.5 69 576-662 73-141 (493)
200 PF07576 BRAP2: BRCA1-associat 83.9 7.9 0.00017 35.7 9.0 66 217-284 14-80 (110)
201 PF07576 BRAP2: BRCA1-associat 82.0 8.9 0.00019 35.4 8.6 64 578-657 13-77 (110)
202 PF11767 SET_assoc: Histone ly 79.7 7.4 0.00016 32.3 6.5 55 436-504 11-65 (66)
203 KOG4285 Mitotic phosphoprotein 79.0 5.2 0.00011 42.6 6.7 64 122-202 198-261 (350)
204 KOG4574 RNA-binding protein (c 78.2 1.4 3.1E-05 52.7 2.6 79 218-302 300-380 (1007)
205 KOG2253 U1 snRNP complex, subu 75.0 2.7 5.9E-05 49.3 3.7 71 422-506 37-107 (668)
206 KOG0804 Cytoplasmic Zn-finger 74.1 8.6 0.00019 43.3 7.0 67 425-498 74-141 (493)
207 PF04847 Calcipressin: Calcipr 73.9 8.2 0.00018 39.1 6.4 63 438-509 8-70 (184)
208 PF10567 Nab6_mRNP_bdg: RNA-re 73.5 1.3E+02 0.0028 32.5 15.1 205 423-672 13-229 (309)
209 PF07292 NID: Nmi/IFP 35 domai 71.7 4.3 9.3E-05 35.8 3.3 64 175-238 1-74 (88)
210 KOG2318 Uncharacterized conser 67.3 24 0.00052 41.2 8.7 129 117-293 170-305 (650)
211 KOG4574 RNA-binding protein (c 67.2 4.9 0.00011 48.5 3.5 73 579-673 300-372 (1007)
212 PF03880 DbpA: DbpA RNA bindin 64.8 22 0.00047 30.1 6.2 59 226-293 11-74 (74)
213 PF11767 SET_assoc: Histone ly 63.6 22 0.00047 29.6 5.7 55 227-290 11-65 (66)
214 KOG2253 U1 snRNP complex, subu 61.2 6.4 0.00014 46.4 3.0 71 213-292 37-107 (668)
215 PF07292 NID: Nmi/IFP 35 domai 57.9 14 0.0003 32.6 3.8 33 14-46 1-34 (88)
216 KOG2318 Uncharacterized conser 57.9 40 0.00086 39.4 8.4 82 422-508 171-306 (650)
217 PF03880 DbpA: DbpA RNA bindin 57.8 11 0.00025 31.9 3.2 34 12-46 41-74 (74)
218 PF14111 DUF4283: Domain of un 47.8 26 0.00057 33.9 4.5 78 172-250 55-139 (153)
219 KOG4019 Calcineurin-mediated s 37.4 31 0.00067 34.4 3.0 75 217-297 11-91 (193)
220 TIGR02542 B_forsyth_147 Bacter 37.2 55 0.0012 30.1 4.3 105 129-268 11-129 (145)
221 KOG4019 Calcineurin-mediated s 32.8 36 0.00078 34.0 2.7 74 426-510 11-90 (193)
222 PF14111 DUF4283: Domain of un 29.0 32 0.0007 33.2 1.8 83 10-153 54-137 (153)
223 KOG4410 5-formyltetrahydrofola 28.9 1.3E+02 0.0028 32.1 6.1 50 119-183 328-378 (396)
224 KOG2295 C2H2 Zn-finger protein 24.5 12 0.00026 43.2 -2.4 73 424-501 230-302 (648)
225 PF10567 Nab6_mRNP_bdg: RNA-re 23.8 1.6E+02 0.0034 31.9 5.6 83 212-294 11-106 (309)
226 KOG4410 5-formyltetrahydrofola 23.6 88 0.0019 33.3 3.7 48 216-268 330-377 (396)
227 KOG3424 40S ribosomal protein 22.9 3.1E+02 0.0067 25.5 6.5 52 587-649 33-84 (132)
228 KOG2295 C2H2 Zn-finger protein 22.6 15 0.00033 42.4 -2.1 74 215-288 230-303 (648)
229 KOG4483 Uncharacterized conser 22.5 1.8E+02 0.0038 32.7 5.8 58 422-486 388-446 (528)
230 PF03468 XS: XS domain; Inter 22.2 71 0.0015 29.8 2.5 57 217-276 9-75 (116)
231 PF03468 XS: XS domain; Inter 21.2 2E+02 0.0044 26.8 5.3 54 578-649 9-71 (116)
No 1
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=9.5e-63 Score=529.46 Aligned_cols=512 Identities=38% Similarity=0.558 Sum_probs=386.6
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCe
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (885)
+.||||++||++++.++|.++|+.+|+|-.+.++.++ ..+.++||+||.|.-.+|++.|++..++..++|+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~---------gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr 75 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNK---------GSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGR 75 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCC---------CcccccCccceeeehHhHHHHHHHHhhcCcccce
Confidence 3799999999999999999999999999999997664 4567899999999999999999999999999999
Q ss_pred eeeecccCCCC------------------------C--CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCC
Q 002741 201 TVWARQLGGEG------------------------S--KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT 254 (885)
Q Consensus 201 ~i~v~~~~~~~------------------------~--~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~ 254 (885)
.|.+.+..... . ....++|+|+|||+.+...+|..+|+.||.|+.|.||+...
T Consensus 76 ~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d- 154 (678)
T KOG0127|consen 76 ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD- 154 (678)
T ss_pred ecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-
Confidence 99874422100 1 12378999999999999999999999999999999998764
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCC
Q 002741 255 GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASD 334 (885)
Q Consensus 255 g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 334 (885)
|.-+|||||+|....+|..||+.|||..|.||+|.|.||.++..|......++..-...... .++.+.+++.+...+
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~e---Eed~e~~~d~~~~~~ 231 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKE---EEDKEADEDDGKDFD 231 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccch---hhhcccccccccccc
Confidence 55569999999999999999999999999999999999999998877654321100000000 000000000000000
Q ss_pred CCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCC
Q 002741 335 DSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKS 414 (885)
Q Consensus 335 ~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 414 (885)
..+..+++......+...+. .. .+.....+....+..+ .++. +......+
T Consensus 232 ~Ed~e~d~edeEe~D~~se~------------------------~e-e~~~~Eee~~~vDd~e-~S~~----~~~~k~~q 281 (678)
T KOG0127|consen 232 EEDGEEDSEDEEETDGNSEA------------------------FE-EGEESEEEEDDVDDEE-SSGK----KESDKKAQ 281 (678)
T ss_pred hhcccccccccccccccchh------------------------hh-cccccccccccccccc-cccc----Ccccchhc
Confidence 00000000000000000000 00 0000000000000000 0010 00000011
Q ss_pred ccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCC
Q 002741 415 LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLG 494 (885)
Q Consensus 415 ~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g 494 (885)
.+-...+...+.+|||+|||+++|+++|.+.|++||.|.++.|+.++.|+.++|+|||.|.+..+|..||.+...+++.|
T Consensus 282 ~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g 361 (678)
T KOG0127|consen 282 NKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDG 361 (678)
T ss_pred cccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCc
Confidence 11123456778999999999999999999999999999999999999999999999999999999999999987666666
Q ss_pred -eeecCeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCC
Q 002741 495 -IFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNF 573 (885)
Q Consensus 495 -~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~ 573 (885)
..|+||.|.|..|..+..+.+.+..+......+++||||.++|.|.+++|++.++|..||..|.........++.+|++
T Consensus 362 ~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnl 441 (678)
T KOG0127|consen 362 SVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNL 441 (678)
T ss_pred eEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHhhcCCce
Confidence 8999999999999999999988887777888899999999999999999999999999999999999999999999999
Q ss_pred CcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHH
Q 002741 574 HVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRV 653 (885)
Q Consensus 574 ~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~ 653 (885)
++|.|+|.|+|||..++...|..|...++...++.....|..++.+.... .+.+.||+||.|..|++|+.|++.
T Consensus 442 hlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~------k~~s~g~aF~~f~EhEhalkalk~ 515 (678)
T KOG0127|consen 442 HLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEK------KNYSEGYAFVGFTEHEHALKALKV 515 (678)
T ss_pred eeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhh------hcccccccccCccHHHHHHHhhhc
Confidence 99999999999999999999999999999988776544444444433322 347899999999999999999988
Q ss_pred hcCCCCCCCCCCceEEEEEcccHHHHHHHHHHHHHHHh
Q 002741 654 LNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKIQAQQQ 691 (885)
Q Consensus 654 lng~p~~~g~~~rliV~~A~e~~~~~~~r~~~~q~~~~ 691 (885)
+ |.-++++|+|+.+++ +.++.+.|..+|
T Consensus 516 ~-------G~lkq~~Vefev~~~---k~~~sk~q~f~q 543 (678)
T KOG0127|consen 516 L-------GVLKQAKVEFEVDGV---KAGRSKGQGFQQ 543 (678)
T ss_pred c-------cccccceEEEEeccc---hhhhhhhhhHHH
Confidence 7 444899999998876 444455554444
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.8e-48 Score=463.34 Aligned_cols=369 Identities=21% Similarity=0.311 Sum_probs=302.1
Q ss_pred EEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeee
Q 002741 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (885)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i 202 (885)
+|||+|||.++++++|+++|+.||.|.+|++++++ .+++++|||||.|.+.++|++|+..+|+..|.|+.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~---------~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS---------VTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC---------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 79999999999999999999999999999998875 468899999999999999999999999999999999
Q ss_pred eecccCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 002741 203 WARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (885)
Q Consensus 203 ~v~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (885)
++...... .......+|||+|||.++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|..|+..|||
T Consensus 73 ~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng 151 (562)
T TIGR01628 73 RIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNG 151 (562)
T ss_pred EeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcc
Confidence 88654321 122345689999999999999999999999999999998874 788999999999999999999999999
Q ss_pred ceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHH
Q 002741 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 360 (885)
Q Consensus 281 ~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~ 360 (885)
..+.|+.|.|.+..++.....
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~----------------------------------------------------------- 172 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREA----------------------------------------------------------- 172 (562)
T ss_pred cEecCceEEEecccccccccc-----------------------------------------------------------
Confidence 999999999976543321100
Q ss_pred hhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHH
Q 002741 361 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 440 (885)
Q Consensus 361 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee 440 (885)
......++|||+|||.++|++
T Consensus 173 -----------------------------------------------------------~~~~~~~~l~V~nl~~~~tee 193 (562)
T TIGR01628 173 -----------------------------------------------------------APLKKFTNLYVKNLDPSVNED 193 (562)
T ss_pred -----------------------------------------------------------ccccCCCeEEEeCCCCcCCHH
Confidence 001123689999999999999
Q ss_pred HHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec----CeEEEEEEccChhhhchh
Q 002741 441 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK----GRQLTVLKALDKKLAHDK 516 (885)
Q Consensus 441 ~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~----gr~l~V~~a~~k~~~~~~ 516 (885)
+|+++|+.||.|.++.++.+. ++.++|||||.|.+.++|.+|++.|+ +..|. |+.|.|.++..+......
T Consensus 194 ~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~-----g~~i~~~~~g~~l~v~~a~~k~er~~~ 267 (562)
T TIGR01628 194 KLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMN-----GKKIGLAKEGKKLYVGRAQKRAEREAE 267 (562)
T ss_pred HHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC-----CcEecccccceeeEeecccChhhhHHH
Confidence 999999999999999888874 68899999999999999999999999 99999 999999998765432110
Q ss_pred hhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCHHHHHH
Q 002741 517 EIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKK 596 (885)
Q Consensus 517 ~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L~~ 596 (885)
..... ........ .....++|||+|||..+|+++|++
T Consensus 268 -~~~~~-----------------------------------~~~~~~~~-------~~~~~~~l~V~nl~~~~~~~~L~~ 304 (562)
T TIGR01628 268 -LRRKF-----------------------------------EELQQERK-------MKAQGVNLYVKNLDDTVTDEKLRE 304 (562)
T ss_pred -HHhhH-----------------------------------Hhhhhhhh-------cccCCCEEEEeCCCCccCHHHHHH
Confidence 00000 00000000 011346899999999999999999
Q ss_pred HHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEcccH
Q 002741 597 LCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNV 676 (885)
Q Consensus 597 lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~~ 676 (885)
+|+ .||.|.+|+|+.| .+| .++|||||+|.+.++|.+|+..|||. +++ ++.|.|.||..
T Consensus 305 ~F~---------~~G~i~~~~i~~d-~~g------~~~g~gfV~f~~~~~A~~A~~~~~g~--~~~-gk~l~V~~a~~-- 363 (562)
T TIGR01628 305 LFS---------ECGEITSAKVMLD-EKG------VSRGFGFVCFSNPEEANRAVTEMHGR--MLG-GKPLYVALAQR-- 363 (562)
T ss_pred HHH---------hcCCeEEEEEEEC-CCC------CcCCeEEEEeCCHHHHHHHHHHhcCC--eeC-CceeEEEeccC--
Confidence 999 4999999999998 344 89999999999999999999999995 555 37777999953
Q ss_pred HHHHHHHHHHHHHHh
Q 002741 677 QTLKQRNAKIQAQQQ 691 (885)
Q Consensus 677 ~~~~~r~~~~q~~~~ 691 (885)
...+.+..+.+++
T Consensus 364 --k~~~~~~~~~~~~ 376 (562)
T TIGR01628 364 --KEQRRAHLQDQFM 376 (562)
T ss_pred --cHHHHHHHHHHHH
Confidence 3344444444443
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.2e-43 Score=411.82 Aligned_cols=447 Identities=17% Similarity=0.203 Sum_probs=283.7
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHh--CCceec
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQKEIK 198 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~l--n~~~i~ 198 (885)
+++|||+|||+.+++++|+++|+.||.|.+|.++. +++||||+|.+.++|..|+..+ ++..|.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---------------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---------------GKRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---------------CCCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 68999999999999999999999999999999853 3579999999999999999974 789999
Q ss_pred CeeeeecccCCCC------------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEec
Q 002741 199 GGTVWARQLGGEG------------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFT 266 (885)
Q Consensus 199 g~~i~v~~~~~~~------------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~ 266 (885)
|+.|+|....... ......+|||+||++.+|+++|+++|+.||.|.+|.|+++. ..++|||+|.
T Consensus 67 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~ 142 (481)
T TIGR01649 67 GQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFE 142 (481)
T ss_pred CeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEEC
Confidence 9999986542111 11123479999999999999999999999999999998753 3479999999
Q ss_pred CHHHHHHHHHHhCCceeCC--eeEEEEeecCCCCCCCCCccccccCCCCCCC---CCCCCCC--CCCCcccCCCCCCCCc
Q 002741 267 CKRDAESAIQKFNGQKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNS---DSGSDDD--LGDDDAETASDDSNSS 339 (885)
Q Consensus 267 ~~e~A~~Al~~lng~~i~g--~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~---~~~~d~~--~~~~~~~~~~~~~~~~ 339 (885)
+.++|.+|+..|||..|.+ +.|+|.|+.+..............-...... +...+.. ........... ..
T Consensus 143 ~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~ 219 (481)
T TIGR01649 143 SVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHP---SS 219 (481)
T ss_pred CHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCC---cc
Confidence 9999999999999999954 5899999987665443322111000000000 0000000 00000000000 00
Q ss_pred cccCCCCCC--CchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccc
Q 002741 340 EKEDLPSNA--DFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQ 417 (885)
Q Consensus 340 e~~~~~~~~--~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~ 417 (885)
....++... .+... ...+. .|. ... .+..... .... .+. .+.....
T Consensus 220 ~~~~g~~~~~~~~~~~-------~~~~~--~~~---~~~---~~~~~~~-----------~~~~-~~~-----~~~~~~~ 267 (481)
T TIGR01649 220 YGHDGYSSHGGPLAPL-------AGGDR--MGP---PHG---PPSRYRP-----------AYEA-APL-----APAISSY 267 (481)
T ss_pred CCCcccccCCCCCCcc-------ccccc--CCC---ccc---CCCCCcc-----------cccc-ccc-----Ccccccc
Confidence 000111111 00000 00000 000 000 0000000 0000 000 0000000
Q ss_pred cCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCee
Q 002741 418 TEGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (885)
Q Consensus 418 ~~~~~~~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~ 496 (885)
......++++|||+|||+ .+|+++|+++|+.||.|..|+|+.+. +|||||+|.+.++|..|+..|| |..
T Consensus 268 ~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln-----g~~ 337 (481)
T TIGR01649 268 GPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLN-----GVK 337 (481)
T ss_pred CCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCE
Confidence 111234678999999998 69999999999999999999998763 6999999999999999999999 999
Q ss_pred ecCeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcc
Q 002741 497 LKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVS 576 (885)
Q Consensus 497 l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s 576 (885)
|.|++|.|.++......... ++...++.+.....+............... .....+
T Consensus 338 l~g~~l~v~~s~~~~~~~~~-------------------~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~-----~~~~~p 393 (481)
T TIGR01649 338 LFGKPLRVCPSKQQNVQPPR-------------------EGQLDDGLTSYKDYSSSRNHRFKKPGSANK-----NNIQPP 393 (481)
T ss_pred ECCceEEEEEcccccccCCC-------------------CCcCcCCCcccccccCCccccCCCcccccc-----cccCCC
Confidence 99999999997543211000 000000000000000000000000000000 011234
Q ss_pred cceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCC--eEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 002741 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV--IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 654 (885)
Q Consensus 577 ~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~--I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~l 654 (885)
+.+|||.|||.++|+++|+++|.. ||. |..|+++... +..+|+|||+|.+.++|..||..|
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~---------~G~~~i~~ik~~~~~--------~~~~~~gfVeF~~~e~A~~Al~~l 456 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAE---------NGVHKVKKFKFFPKD--------NERSKMGLLEWESVEDAVEALIAL 456 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHh---------cCCccceEEEEecCC--------CCcceeEEEEcCCHHHHHHHHHHh
Confidence 578999999999999999999994 897 8888886432 135799999999999999999999
Q ss_pred cCCCCCCCCC-C---ceEEEEEc
Q 002741 655 NNNPKTFGPE-H---RPIVEFAV 673 (885)
Q Consensus 655 ng~p~~~g~~-~---rliV~~A~ 673 (885)
||. .+-+.. . .|.|.||.
T Consensus 457 n~~-~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 457 NHH-QLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred cCC-ccCCCCCCccceEEEEecc
Confidence 997 333311 1 25588884
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4e-44 Score=426.14 Aligned_cols=327 Identities=21% Similarity=0.330 Sum_probs=273.7
Q ss_pred CcccCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccc
Q 002741 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (885)
Q Consensus 1 iv~dk~tg~srG~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (885)
|++|+.|++++|||||.|.+.+||++||+.+|+..|.|+.|+|.|+...+ .
T Consensus 32 v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~-~---------------------------- 82 (562)
T TIGR01628 32 VCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP-S---------------------------- 82 (562)
T ss_pred EEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc-c----------------------------
Confidence 46789999999999999999999999999999999999999999983211 0
Q ss_pred cccccchhhhhcCCCCCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhh
Q 002741 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (885)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~ 160 (885)
.......+|||+|||.++++++|+++|+.||.|.+|.++.+
T Consensus 83 -----------------------------------~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~---- 123 (562)
T TIGR01628 83 -----------------------------------LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD---- 123 (562)
T ss_pred -----------------------------------ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec----
Confidence 01112457999999999999999999999999999999766
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeeeeecccCCC-----CCCCCCcEEEEcCCCCCCCHHHHHH
Q 002741 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE-----GSKTQKWKLIIRNIPFKAKVNEIKD 235 (885)
Q Consensus 161 ~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~-----~~~~~~~~l~V~nLp~~~te~~L~~ 235 (885)
.+|.++|||||.|.+.++|..|+..+|+..+.|+.|.+...... ......++|||+|||.++|+++|++
T Consensus 124 ------~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 124 ------ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred ------CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 46889999999999999999999999999999999987543211 1234457899999999999999999
Q ss_pred hhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC----CeeEEEEeecCCCCCCCCCccccccCC
Q 002741 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAVDWAVPKNIYSSGGAAAGVQNK 311 (885)
Q Consensus 236 ~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~----g~~i~V~~a~~k~~~~~~~~~~~~~~~ 311 (885)
+|+.||.|.++.++.+. +|.++|||||.|.+.++|.+|++.|+|..|. |+.|.|.++..+......
T Consensus 198 ~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~--------- 267 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAE--------- 267 (562)
T ss_pred HHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHH---------
Confidence 99999999999998874 6889999999999999999999999999999 999999987544211000
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcch
Q 002741 312 GDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDK 391 (885)
Q Consensus 312 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~ 391 (885)
..........
T Consensus 268 ---------------------------------------------~~~~~~~~~~------------------------- 277 (562)
T TIGR01628 268 ---------------------------------------------LRRKFEELQQ------------------------- 277 (562)
T ss_pred ---------------------------------------------HHhhHHhhhh-------------------------
Confidence 0000000000
Q ss_pred hhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEE
Q 002741 392 TVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGF 471 (885)
Q Consensus 392 ~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aF 471 (885)
.......+++|||+|||..+|+++|+++|+.||.|.+|.++.+ .++.++||||
T Consensus 278 --------------------------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gf 330 (562)
T TIGR01628 278 --------------------------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGF 330 (562)
T ss_pred --------------------------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEE
Confidence 0001123468999999999999999999999999999999998 6899999999
Q ss_pred EEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhh
Q 002741 472 LKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (885)
Q Consensus 472 V~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~ 513 (885)
|+|.+.++|.+|+..|| |..|+|++|.|.+|..+...
T Consensus 331 V~f~~~~~A~~A~~~~~-----g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 331 VCFSNPEEANRAVTEMH-----GRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred EEeCCHHHHHHHHHHhc-----CCeeCCceeEEEeccCcHHH
Confidence 99999999999999999 99999999999999876544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7e-40 Score=368.07 Aligned_cols=345 Identities=22% Similarity=0.281 Sum_probs=238.3
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCe
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (885)
..+|||+|||..+++++|+++|+.||+|.+|++++++ .+|.++|||||+|.+.++|..|+..||+..|.|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~---------~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK---------VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC---------CCCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 4689999999999999999999999999999998886 4789999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 002741 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (885)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (885)
.|.|.............+|||+|||..+++++|+.+|+.||.|..+.++.+..++.++|||||+|.+.++|..|+..|||
T Consensus 74 ~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 74 TIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred eEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 99997665544455678999999999999999999999999999999999887888999999999999999999999999
Q ss_pred ceeCC--eeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHH
Q 002741 281 QKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIAR 358 (885)
Q Consensus 281 ~~i~g--~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~ 358 (885)
..+.| .+|.|.|+................................ ................ +....+. .....
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~ 228 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTIL--TAAGIGPMHHAAARFR-PSAGDFT--AVLAH 228 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccc--cccCCCCccCcccccc-cCcchhh--hhhhh
Confidence 99876 6788888865432111100000000000000000000000 0000000000000000 0000000 00000
Q ss_pred HHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCcc-ccCCCCCCCCeEEEcCCCCCC
Q 002741 359 KVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLK-QTEGEDELQNTIFICNLPFDL 437 (885)
Q Consensus 359 ~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k-~~~~~~~~~~~l~V~nLp~~~ 437 (885)
..... .++........ . .+............ ........+.+|||+|||+++
T Consensus 229 ~~~~~------~~~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~ 281 (352)
T TIGR01661 229 QQQQH------AVAQQHAAQRA--S-------------------PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDT 281 (352)
T ss_pred hhhhc------ccccccccccC--C-------------------CccccccccccccCCCCCCCCCCCcEEEEeCCCCCC
Confidence 00000 00000000000 0 00000000000000 000123445689999999999
Q ss_pred CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002741 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 438 tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
++++|+++|++||.|.+|+|+.+..++.++|||||.|.+.++|..||..|| |..|+|+.|.|.|+.++.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ln-----G~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLN-----GYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhC-----CCEECCeEEEEEEccCCC
Confidence 999999999999999999999999999999999999999999999999999 999999999999988764
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.5e-40 Score=370.52 Aligned_cols=312 Identities=22% Similarity=0.332 Sum_probs=228.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
..+|||+|||..+++++|+++|+.||+|.+|.|+++..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002741 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (885)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~ 375 (885)
...
T Consensus 83 ~~~----------------------------------------------------------------------------- 85 (352)
T TIGR01661 83 SSD----------------------------------------------------------------------------- 85 (352)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 320
Q ss_pred CchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 002741 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
....++|||+|||..+++++|+.+|+.||.|..+
T Consensus 86 ----------------------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~ 119 (352)
T TIGR01661 86 ----------------------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITS 119 (352)
T ss_pred ----------------------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEE
Confidence 0012589999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChhhhchhhhhhhcccc--cccccc
Q 002741 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDKSKNET--NDHRNL 531 (885)
Q Consensus 456 ~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g--r~l~V~~a~~k~~~~~~~~~~~~~~~--~~~~~~ 531 (885)
.++.+..++.++|||||+|.+.++|..|+..|| |..+.| .+|.|.|+.................. ......
T Consensus 120 ~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~-----g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (352)
T TIGR01661 120 RILSDNVTGLSKGVGFIRFDKRDEADRAIKTLN-----GTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRV 194 (352)
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCC
Confidence 999988888999999999999999999999999 888876 67899998755422111111100000 000000
Q ss_pred hhh---ccCcccCCCCCCCCCChhhHHHH----HHHHHH-----hh-----------------hccCCCCCCcccceEEE
Q 002741 532 YLA---KEGLILEGTPAAEGVSDDDMSKR----QMLHEK-----KM-----------------TKLQSPNFHVSRTRLVI 582 (885)
Q Consensus 532 ~l~---~eg~~~~~sp~~~~~s~~d~~~r----~~~~~~-----~~-----------------~~~~~p~~~~s~~~L~V 582 (885)
.+. ..+...+................ ...... .. .....+.......+|||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV 274 (352)
T TIGR01661 195 PLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFV 274 (352)
T ss_pred CccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEE
Confidence 000 00000000000000000000000 000000 00 00000111112236999
Q ss_pred cCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 002741 583 YNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFG 662 (885)
Q Consensus 583 ~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g 662 (885)
+|||+.+++++|+++|+ +||.|.+|+|++|+.++ .++|||||+|.++++|..||..|||. . |+
T Consensus 275 ~NL~~~~~e~~L~~~F~---------~fG~v~~v~i~~d~~t~------~skG~aFV~F~~~~~A~~Ai~~lnG~-~-~~ 337 (352)
T TIGR01661 275 YNLSPDTDETVLWQLFG---------PFGAVQNVKIIRDLTTN------QCKGYGFVSMTNYDEAAMAILSLNGY-T-LG 337 (352)
T ss_pred eCCCCCCCHHHHHHHHH---------hCCCeEEEEEeEcCCCC------CccceEEEEECCHHHHHHHHHHhCCC-E-EC
Confidence 99999999999999999 59999999999998776 89999999999999999999999996 3 44
Q ss_pred CCCceEEEEEc
Q 002741 663 PEHRPIVEFAV 673 (885)
Q Consensus 663 ~~~rliV~~A~ 673 (885)
+++|.|.|+.
T Consensus 338 -gr~i~V~~~~ 347 (352)
T TIGR01661 338 -NRVLQVSFKT 347 (352)
T ss_pred -CeEEEEEEcc
Confidence 3666699985
No 7
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-39 Score=352.63 Aligned_cols=359 Identities=22% Similarity=0.307 Sum_probs=293.3
Q ss_pred EEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeee
Q 002741 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (885)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i 202 (885)
.|||| +++|+..|+++|+.+|+|.+|++.+| . + +.|||||.|.++.+|.+|+.+||...|.|++|
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d----------~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRD----------A-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeec----------C-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 58999 99999999999999999999999766 4 4 99999999999999999999999999999999
Q ss_pred eecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 002741 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (885)
Q Consensus 203 ~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~ 282 (885)
++.+..... ..|||+||+++++...|.++|+.||.|++|++..+. .| ++|| ||+|.+++.|.+|+..|||..
T Consensus 68 rim~s~rd~-----~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 68 RIMWSQRDP-----SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred EeehhccCC-----ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 997654322 239999999999999999999999999999999975 45 9999 999999999999999999999
Q ss_pred eCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhh
Q 002741 283 FGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLN 362 (885)
Q Consensus 283 i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~ 362 (885)
+.++.|.|....++..+......
T Consensus 140 l~~kki~vg~~~~~~er~~~~~~--------------------------------------------------------- 162 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPLGE--------------------------------------------------------- 162 (369)
T ss_pred cCCCeeEEeeccchhhhcccccc---------------------------------------------------------
Confidence 99999999887554322100000
Q ss_pred hcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHH
Q 002741 363 KLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEV 442 (885)
Q Consensus 363 ~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L 442 (885)
....-++++|.|++.+++++.|
T Consensus 163 ----------------------------------------------------------~~~~~t~v~vk~~~~~~~~~~l 184 (369)
T KOG0123|consen 163 ----------------------------------------------------------YKKRFTNVYVKNLEEDSTDEEL 184 (369)
T ss_pred ----------------------------------------------------------hhhhhhhhheeccccccchHHH
Confidence 0011258999999999999999
Q ss_pred HHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhc
Q 002741 443 KQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSK 522 (885)
Q Consensus 443 ~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~ 522 (885)
.++|..||.|.++.++.+. .+.+++|+||.|.++++|..|+..|+ +..+++..+.|..+..+..... ..
T Consensus 185 ~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~-----~~~~~~~~~~V~~aqkk~e~~~-~l---- 253 (369)
T KOG0123|consen 185 KDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLN-----GKIFGDKELYVGRAQKKSEREA-EL---- 253 (369)
T ss_pred HHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhcc-----CCcCCccceeecccccchhhHH-HH----
Confidence 9999999999999888875 56699999999999999999999999 8999999999999876322210 00
Q ss_pred ccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCHHHHHHHHHHHH
Q 002741 523 NETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAV 602 (885)
Q Consensus 523 ~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~ 602 (885)
+........ .+.......+|||.|++..++.+.|+++|+
T Consensus 254 ----------------------------------~~~~~~~~~----~~~~~~~~~nl~vknld~~~~~e~L~~~f~--- 292 (369)
T KOG0123|consen 254 ----------------------------------KRKFEQEFA----KRSVSLQGANLYVKNLDETLSDEKLRKIFS--- 292 (369)
T ss_pred ----------------------------------hhhhHhhhh----hccccccccccccccCccccchhHHHHHHh---
Confidence 000000000 111122346799999999999999999999
Q ss_pred hhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEcccHHHHHHH
Q 002741 603 VSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQR 682 (885)
Q Consensus 603 ~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~~~~~~~r 682 (885)
.||.|.+++|+.+. .++++|||||+|.+.++|..|+..+|+. +.+ ++.+.|.++ +..+.+
T Consensus 293 ------~~GeI~s~kv~~~~-------~g~skG~gfV~fs~~eeA~~A~~~~n~~--~i~-~k~l~vav~----qr~~~r 352 (369)
T KOG0123|consen 293 ------SFGEITSAKVMVDE-------NGKSKGFGFVEFSSPEEAKKAMTEMNGR--LIG-GKPLYVAVA----QRKEDR 352 (369)
T ss_pred ------cccceeeEEEEecc-------CCCccceEEEEcCCHHHHHHHHHhhChh--hhc-CCchhhhHH----hhhccc
Confidence 49999999999874 4689999999999999999999999995 444 245558888 466666
Q ss_pred HHHHHHHHh
Q 002741 683 NAKIQAQQQ 691 (885)
Q Consensus 683 ~~~~q~~~~ 691 (885)
.++++.+++
T Consensus 353 ~~~~~~~~~ 361 (369)
T KOG0123|consen 353 RARLQAVFG 361 (369)
T ss_pred hhhhhhhcc
Confidence 666666554
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.4e-36 Score=352.86 Aligned_cols=336 Identities=20% Similarity=0.226 Sum_probs=242.9
Q ss_pred cccEEEEEeCCHHHHHHHHHH--hCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccccccccch
Q 002741 10 HRGFGYVQFAVMEDANRAVEM--KNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSS 87 (885)
Q Consensus 10 srG~afV~F~~~edA~~Al~~--lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (885)
++|||||+|.+.++|.+|+.. +++..|.|+.|+|.++.++... +.. + .
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~--~~~---~-------------~------------ 86 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK--RDG---N-------------S------------ 86 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc--cCC---C-------------C------------
Confidence 679999999999999999997 4789999999999999543200 000 0 0
Q ss_pred hhhhcCCCCCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccC
Q 002741 88 KLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQ 167 (885)
Q Consensus 88 ~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~ 167 (885)
+ .+ ........+|||+||+..+++++|+++|+.||.|.+|.++.+.
T Consensus 87 -------------------~-~~----~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---------- 132 (481)
T TIGR01649 87 -------------------D-FD----SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---------- 132 (481)
T ss_pred -------------------c-cc----CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----------
Confidence 0 00 0011134579999999999999999999999999999986431
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHHhCCceecCe--eeeecccC----------CC-------------------------
Q 002741 168 EGCKMDASAVLYTTVKSACASVALLHQKEIKGG--TVWARQLG----------GE------------------------- 210 (885)
Q Consensus 168 ~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~--~i~v~~~~----------~~------------------------- 210 (885)
..++|||+|.+.++|.+|+..|||..|.|. .|.+.... ..
T Consensus 133 ---~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~ 209 (481)
T TIGR01649 133 ---NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQ 209 (481)
T ss_pred ---CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccc
Confidence 246899999999999999999999999653 23221000 00
Q ss_pred ------------------------------------------------------------CCCCCCcEEEEcCCCC-CCC
Q 002741 211 ------------------------------------------------------------GSKTQKWKLIIRNIPF-KAK 229 (885)
Q Consensus 211 ------------------------------------------------------------~~~~~~~~l~V~nLp~-~~t 229 (885)
......++|||+|||+ .+|
T Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt 289 (481)
T TIGR01649 210 PALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVN 289 (481)
T ss_pred cccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCC
Confidence 0011356999999998 699
Q ss_pred HHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCcccccc
Q 002741 230 VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQ 309 (885)
Q Consensus 230 e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~ 309 (885)
+++|+++|+.||.|..|.|+.+ .+|||||+|.+.++|..||..|||..|.|++|+|.++........... .
T Consensus 290 ~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~---~- 360 (481)
T TIGR01649 290 CDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG---Q- 360 (481)
T ss_pred HHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC---c-
Confidence 9999999999999999999885 468999999999999999999999999999999999865432110000 0
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCc
Q 002741 310 NKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDS 389 (885)
Q Consensus 310 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~ 389 (885)
.. +. .....+|... ...
T Consensus 361 ------~~----~~--------------------~~~~~d~~~~----------~~~----------------------- 377 (481)
T TIGR01649 361 ------LD----DG--------------------LTSYKDYSSS----------RNH----------------------- 377 (481)
T ss_pred ------Cc----CC--------------------CcccccccCC----------ccc-----------------------
Confidence 00 00 0000000000 000
Q ss_pred chhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC--eeEEEEeecCCCCCcc
Q 002741 390 DKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE--VVSFVPVLHQVTKRPK 467 (885)
Q Consensus 390 ~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~--I~~v~i~~~~~~~~~~ 467 (885)
....+. ........+++.+|||+|||+.+++++|+++|+.||. |..|++.... ++ .+
T Consensus 378 ------------------r~~~~~-~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~ 436 (481)
T TIGR01649 378 ------------------RFKKPG-SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RS 436 (481)
T ss_pred ------------------cCCCcc-cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cc
Confidence 000000 0000001235679999999999999999999999998 8888775443 23 57
Q ss_pred eEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE------EEEEEccCh
Q 002741 468 GTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ------LTVLKALDK 510 (885)
Q Consensus 468 g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~------l~V~~a~~k 510 (885)
++|||+|.+.++|..|+..|| +..|.|+. |.|.|+.++
T Consensus 437 ~~gfVeF~~~e~A~~Al~~ln-----~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 437 KMGLLEWESVEDAVEALIALN-----HHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred eeEEEEcCCHHHHHHHHHHhc-----CCccCCCCCCccceEEEEeccCC
Confidence 999999999999999999999 99999885 999998653
No 9
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=346.21 Aligned_cols=313 Identities=24% Similarity=0.400 Sum_probs=221.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
.+.|+|+|||..+..++|..+|..||.|..|.++. ..--|+|.|.++.+|..|+..|.+..+...++++.|+ |
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~------~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a-P 457 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP------GGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA-P 457 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCc------ccceeeeeecCccchHHHHHHhchhhhccCccccccC-h
Confidence 46899999999999999999999999999996663 2234999999999999999999999999999999998 5
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002741 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (885)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~ 375 (885)
...+........-.+... .............. .+.+....
T Consensus 458 ~dvf~~~pka~~~~~e~~-------------~~~ee~~~Er~s~~---------------------------d~~v~eD~ 497 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESR-------------SKMEENPSERVSAE---------------------------DGQVEEDK 497 (725)
T ss_pred hhhccCCccccccccccc-------------cccccCcceecccc---------------------------cccccccC
Confidence 554442211100000000 00000000000000 00000000
Q ss_pred CchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 002741 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
+ +.+...+..+ .......+.|||+||++++|.++|..+|..+|.|.+|
T Consensus 498 d----------------~te~ss~a~~----------------a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~ 545 (725)
T KOG0110|consen 498 D----------------PTEESSLARV----------------AEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSI 545 (725)
T ss_pred C----------------ccccccchhh----------------hhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEE
Confidence 0 0000000000 0001111349999999999999999999999999999
Q ss_pred EEeecCCC---CCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccccccccch
Q 002741 456 VPVLHQVT---KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLY 532 (885)
Q Consensus 456 ~i~~~~~~---~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~ 532 (885)
.|...+.. -.+.|||||+|.+.++|+.|+..|+ |..|+|+.|.|.++..+...... +
T Consensus 546 ~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lq-----gtvldGH~l~lk~S~~k~~~~~g---K------------ 605 (725)
T KOG0110|consen 546 EISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQ-----GTVLDGHKLELKISENKPASTVG---K------------ 605 (725)
T ss_pred EEeccccccccccccceeEEEecCHHHHHHHHHHhc-----CceecCceEEEEeccCccccccc---c------------
Confidence 87765532 1356999999999999999999999 99999999999998733221100 0
Q ss_pred hhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCC
Q 002741 533 LAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPV 612 (885)
Q Consensus 533 l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~ 612 (885)
..... ...+.|+|+|||+.++-.+|+.+|. +||.
T Consensus 606 ---------------------------------~~~~k----k~~tKIlVRNipFeAt~rEVr~LF~---------aFGq 639 (725)
T KOG0110|consen 606 ---------------------------------KKSKK----KKGTKILVRNIPFEATKREVRKLFT---------AFGQ 639 (725)
T ss_pred ---------------------------------ccccc----cccceeeeeccchHHHHHHHHHHHh---------cccc
Confidence 00000 0136899999999999999999999 6999
Q ss_pred eEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEcccHHHHHHH
Q 002741 613 IKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQR 682 (885)
Q Consensus 613 I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~~~~~~~r 682 (885)
|.+|+|+.... .+.++|||||+|.++.+|.+|+.+|.+. |+|| |||+++||..+.-....|
T Consensus 640 lksvRlPKK~~------k~a~rGF~Fv~f~t~~ea~nA~~al~ST-HlyG--RrLVLEwA~~d~~~e~~r 700 (725)
T KOG0110|consen 640 LKSVRLPKKIG------KGAHRGFGFVDFLTPREAKNAFDALGST-HLYG--RRLVLEWAKSDNTMEALR 700 (725)
T ss_pred eeeeccchhhc------chhhccceeeeccCcHHHHHHHHhhccc-ceec--hhhheehhccchHHHHHH
Confidence 99999997633 3478999999999999999999999954 9999 999999998776644444
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=9.7e-37 Score=350.78 Aligned_cols=302 Identities=21% Similarity=0.255 Sum_probs=234.6
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
...++|||+|||.++++++|+++|+.||.|.+|+|++| .+|.++|||||+|.+.++|..||+.||+..|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D----------~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD----------FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC----------CCCCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 35689999999999999999999999999999999887 47899999999999999999999999999885
Q ss_pred -CeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEE-cccCCCCCceeEEEEEecCHHHHHHHH
Q 002741 199 -GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYI-PHNTDTGLSKGFAFVKFTCKRDAESAI 275 (885)
Q Consensus 199 -g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i-~~~~~~g~~~g~afV~F~~~e~A~~Al 275 (885)
|+.|.+... ...++|||+|||.++++++|.++|+.++. +..+.+ ......++++|||||+|.+.++|..|+
T Consensus 126 ~Gr~l~V~~S------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Ai 199 (578)
T TIGR01648 126 PGRLLGVCIS------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMAR 199 (578)
T ss_pred CCcccccccc------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHH
Confidence 677766532 34679999999999999999999999864 444444 333345678999999999999999999
Q ss_pred HHhCC--ceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhH
Q 002741 276 QKFNG--QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEE 353 (885)
Q Consensus 276 ~~lng--~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~ 353 (885)
..|+. ..+.|+.|.|.|+.+......
T Consensus 200 rkL~~gki~l~Gr~I~VdwA~p~~~~d~---------------------------------------------------- 227 (578)
T TIGR01648 200 RKLMPGRIQLWGHVIAVDWAEPEEEVDE---------------------------------------------------- 227 (578)
T ss_pred HHhhccceEecCceEEEEeecccccccc----------------------------------------------------
Confidence 98864 357899999999865421000
Q ss_pred HHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCC
Q 002741 354 VDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL 433 (885)
Q Consensus 354 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nL 433 (885)
......++|||+||
T Consensus 228 ------------------------------------------------------------------~~~~~~k~LfVgNL 241 (578)
T TIGR01648 228 ------------------------------------------------------------------DVMAKVKILYVRNL 241 (578)
T ss_pred ------------------------------------------------------------------cccccccEEEEeCC
Confidence 00011258999999
Q ss_pred CCCCCHHHHHHHHhcc--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002741 434 PFDLDNEEVKQRFSAF--GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 434 p~~~tee~L~~~F~~f--G~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
|..+++++|+++|+.| |.|..|.++ ++||||+|.+.++|.+|++.|| +..|+|+.|.|.||.+..
T Consensus 242 ~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~ln-----G~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 242 MTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELN-----GKELEGSEIEVTLAKPVD 308 (578)
T ss_pred CCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhC-----CCEECCEEEEEEEccCCC
Confidence 9999999999999999 999999764 5699999999999999999999 999999999999998754
Q ss_pred hhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCH
Q 002741 512 LAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTE 591 (885)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte 591 (885)
.......... .+ .. +.+ + .... ...++.+...+.++++.|+|+..++
T Consensus 309 ~~~~~~~~rg--------------~g-----g~---~~~------~----~~~~-~~~g~~~sp~s~~~~~g~~~~~~~~ 355 (578)
T TIGR01648 309 KKSYVRYTRG--------------TG-----GR---GKE------R----QAAR-QSLGQVYDPASRSLAYEDYYYHPPY 355 (578)
T ss_pred cccccccccc--------------cC-----CC---ccc------c----cccc-cccCcccCccccccccccccccccc
Confidence 3211100000 00 00 000 0 0000 0111222234578999999999999
Q ss_pred HHHHHHHHH
Q 002741 592 KGLKKLCID 600 (885)
Q Consensus 592 ~~L~~lF~~ 600 (885)
+-+.++|..
T Consensus 356 ~~~~~~f~~ 364 (578)
T TIGR01648 356 APSLHFPRM 364 (578)
T ss_pred cchhhcccc
Confidence 999999994
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=298.99 Aligned_cols=301 Identities=24% Similarity=0.382 Sum_probs=234.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
....+.|+|.-||.++|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.+++||++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002741 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (885)
Q Consensus 293 a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p 372 (885)
+.|...
T Consensus 118 ARPSs~-------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 118 ARPSSD-------------------------------------------------------------------------- 123 (360)
T ss_pred ccCChh--------------------------------------------------------------------------
Confidence 987531
Q ss_pred CCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCe
Q 002741 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (885)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I 452 (885)
...+.+|||.+||..+|..||..+|++||.|
T Consensus 124 -------------------------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrI 154 (360)
T KOG0145|consen 124 -------------------------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRI 154 (360)
T ss_pred -------------------------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhh
Confidence 0113589999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChhhhchhhhhhhccccccccc
Q 002741 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLAHDKEIDKSKNETNDHRN 530 (885)
Q Consensus 453 ~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g--r~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~ 530 (885)
..-+|+.|..+|.++|.|||.|....+|+.||..|| |..-.| .+|.|.||..............
T Consensus 155 ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lN-----G~~P~g~tepItVKFannPsq~t~~a~ls~--------- 220 (360)
T KOG0145|consen 155 ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLN-----GQKPSGCTEPITVKFANNPSQKTNQALLSQ--------- 220 (360)
T ss_pred hhhhhhhhcccceecceeEEEecchhHHHHHHHhcc-----CCCCCCCCCCeEEEecCCcccccchhhhHH---------
Confidence 999999999999999999999999999999999999 554444 5899999986644332221110
Q ss_pred chhhcc----Ccc------------cCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCHHHH
Q 002741 531 LYLAKE----GLI------------LEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGL 594 (885)
Q Consensus 531 ~~l~~e----g~~------------~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L 594 (885)
+|.... |.+ +........+++.-... ........-|.......+|||.||..+++|.-|
T Consensus 221 ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~-----m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~L 295 (360)
T KOG0145|consen 221 LYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDG-----MSGLAGVNLPGGPGGGWCIFVYNLSPDADESIL 295 (360)
T ss_pred hhcCccccCCCcccchhhhhccccccchhhhhccCCCccccc-----cceeeeeccCCCCCCeeEEEEEecCCCchHhHH
Confidence 111100 000 00000000000000000 000011112333345689999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEc
Q 002741 595 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAV 673 (885)
Q Consensus 595 ~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~ 673 (885)
..+|. +||.|..|+|++|..+. +++|||||.+.+.++|..||..|||. -+| ++-|-|.|-.
T Consensus 296 WQlFg---------pFGAv~nVKvirD~ttn------kCKGfgFVtMtNYdEAamAi~sLNGy--~lg-~rvLQVsFKt 356 (360)
T KOG0145|consen 296 WQLFG---------PFGAVTNVKVIRDFTTN------KCKGFGFVTMTNYDEAAMAIASLNGY--RLG-DRVLQVSFKT 356 (360)
T ss_pred HHHhC---------cccceeeEEEEecCCcc------cccceeEEEecchHHHHHHHHHhcCc--ccc-ceEEEEEEec
Confidence 99999 79999999999998776 99999999999999999999999996 346 2444498863
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=298.13 Aligned_cols=316 Identities=23% Similarity=0.286 Sum_probs=241.9
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCe
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (885)
-..|+|.-||..+|++||+.+|..+|+|++|++++|| .+|.+.||+||.|.+++||++|+..|||-.+..+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---------itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---------ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK 111 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---------ccccccccceeeecChHHHHHHHhhhcceeeccc
Confidence 4568888899999999999999999999999999998 5899999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 002741 201 TVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (885)
Q Consensus 201 ~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (885)
.|.|...++.........|||.+||..+|..+|..+|++||.|..-+|+.|..+|.++|.+||.|....+|+.||..|||
T Consensus 112 TIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 112 TIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred eEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 99998888877888899999999999999999999999999999899999999999999999999999999999999999
Q ss_pred ceeCC--eeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHH
Q 002741 281 QKFGK--RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIAR 358 (885)
Q Consensus 281 ~~i~g--~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~ 358 (885)
..-.| .+|.|.|+...........-..-. .... . ....... ....+
T Consensus 192 ~~P~g~tepItVKFannPsq~t~~a~ls~ly----~sp~-----------r-------------r~~Gp~h----h~~~r 239 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQKTNQALLSQLY----QSPA-----------R-------------RYGGPMH----HQAQR 239 (360)
T ss_pred CCCCCCCCCeEEEecCCcccccchhhhHHhh----cCcc-----------c-------------cCCCccc----chhhh
Confidence 88744 589999986442211110000000 0000 0 0000000 00000
Q ss_pred HHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCC
Q 002741 359 KVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLD 438 (885)
Q Consensus 359 ~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~t 438 (885)
-.+.+++.. .+......|+....++. +.++ --+.....+.+|||.||.++++
T Consensus 240 ~r~~~~~~~-----~~~~~rfsP~~~d~m~~---------l~~~--------------~lp~~~~~g~ciFvYNLspd~d 291 (360)
T KOG0145|consen 240 FRLDNLLNP-----HAAQARFSPMTIDGMSG---------LAGV--------------NLPGGPGGGWCIFVYNLSPDAD 291 (360)
T ss_pred hccccccch-----hhhhccCCCccccccce---------eeee--------------ccCCCCCCeeEEEEEecCCCch
Confidence 011111100 00001111111111100 0000 0001233478999999999999
Q ss_pred HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002741 439 NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 439 ee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (885)
|.-|+++|.+||.|..|+|++|..|.+++|||||.+.+-++|..||..|| |..++++.|.|.|...+
T Consensus 292 e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN-----Gy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 292 ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN-----GYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc-----CccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999 99999999999996543
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7e-36 Score=316.55 Aligned_cols=250 Identities=25% Similarity=0.325 Sum_probs=217.0
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 002741 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (885)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~ 196 (885)
.+..++.||||.||.++.|++|..+|+++|+|.++++|+|+ .+|.++|||||.|.+.++|+.||+.||+.+
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~---------~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDP---------FSGDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecc---------cCCCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 34678999999999999999999999999999999999996 589999999999999999999999999998
Q ss_pred e-cCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEcccCC-CCCceeEEEEEecCHHHHHH
Q 002741 197 I-KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGL-VWNVYIPHNTD-TGLSKGFAFVKFTCKRDAES 273 (885)
Q Consensus 197 i-~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~~~~-~g~~~g~afV~F~~~e~A~~ 273 (885)
| .|+.|.|. .....++|||+|||.++++++|.+.|++.++ |..|.|...+. ..+++|||||+|.+...|..
T Consensus 150 ir~GK~igvc------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~ 223 (506)
T KOG0117|consen 150 IRPGKLLGVC------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAM 223 (506)
T ss_pred ccCCCEeEEE------EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHH
Confidence 8 57888876 4456789999999999999999999999887 77777766543 35799999999999999999
Q ss_pred HHHHhCCc--eeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCch
Q 002741 274 AIQKFNGQ--KFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFD 351 (885)
Q Consensus 274 Al~~lng~--~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~ 351 (885)
|-.+|-.. .+.|+.|.|+||.|...--
T Consensus 224 aRrKl~~g~~klwgn~~tVdWAep~~e~d--------------------------------------------------- 252 (506)
T KOG0117|consen 224 ARRKLMPGKIKLWGNAITVDWAEPEEEPD--------------------------------------------------- 252 (506)
T ss_pred HHhhccCCceeecCCcceeeccCcccCCC---------------------------------------------------
Confidence 99987544 4589999999997764100
Q ss_pred hHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEc
Q 002741 352 EEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFIC 431 (885)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~ 431 (885)
.+.++.| ..|||+
T Consensus 253 --------------------------------------------ed~ms~V-----------------------KvLYVR 265 (506)
T KOG0117|consen 253 --------------------------------------------EDTMSKV-----------------------KVLYVR 265 (506)
T ss_pred --------------------------------------------hhhhhhe-----------------------eeeeee
Confidence 0011111 489999
Q ss_pred CCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002741 432 NLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 432 nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
||+.++|++.|+++|..||.|+.|+.+ +.||||.|.+.++|.+||+.+| |..|+|..|.|.+|+|..
T Consensus 266 NL~~~tTeE~lk~~F~~~G~veRVkk~--------rDYaFVHf~eR~davkAm~~~n-----gkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 266 NLMESTTEETLKKLFNEFGKVERVKKP--------RDYAFVHFAEREDAVKAMKETN-----GKELDGSPIEVTLAKPVD 332 (506)
T ss_pred ccchhhhHHHHHHHHHhccceEEeecc--------cceeEEeecchHHHHHHHHHhc-----CceecCceEEEEecCChh
Confidence 999999999999999999999999766 4499999999999999999999 999999999999999864
Q ss_pred h
Q 002741 512 L 512 (885)
Q Consensus 512 ~ 512 (885)
.
T Consensus 333 k 333 (506)
T KOG0117|consen 333 K 333 (506)
T ss_pred h
Confidence 3
No 14
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-36 Score=331.50 Aligned_cols=312 Identities=23% Similarity=0.363 Sum_probs=261.5
Q ss_pred CcccCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccc
Q 002741 1 MVTKKGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVIS 80 (885)
Q Consensus 1 iv~dk~tg~srG~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (885)
|++|- | |.|||||.|.+++||++||+.+|...|.|++|+|+|+..
T Consensus 30 vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r-------------------------------- 74 (369)
T KOG0123|consen 30 VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR-------------------------------- 74 (369)
T ss_pred EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc--------------------------------
Confidence 35676 5 999999999999999999999999999999999999931
Q ss_pred cccccchhhhhcCCCCCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhh
Q 002741 81 GAEKHSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEEL 160 (885)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~ 160 (885)
+...|||.||+++++..+|+++|+.||.|++|++..+.
T Consensus 75 ---------------------------------------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~--- 112 (369)
T KOG0123|consen 75 ---------------------------------------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE--- 112 (369)
T ss_pred ---------------------------------------CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC---
Confidence 11129999999999999999999999999999998774
Q ss_pred hhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeeeeecccCCC--------CCCCCCcEEEEcCCCCCCCHHH
Q 002741 161 EQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGE--------GSKTQKWKLIIRNIPFKAKVNE 232 (885)
Q Consensus 161 ~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~--------~~~~~~~~l~V~nLp~~~te~~ 232 (885)
.| ++|| ||+|.++++|.+|+..+||..+.|+.|++-..... ......+.++|.|++.+++++.
T Consensus 113 -------~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~ 183 (369)
T KOG0123|consen 113 -------NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEE 183 (369)
T ss_pred -------CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHH
Confidence 45 8999 99999999999999999999999999998432211 1234467899999999999999
Q ss_pred HHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCC
Q 002741 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKG 312 (885)
Q Consensus 233 L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~ 312 (885)
|..+|..||.|.++.++.+. .|.+++|+||.|.++++|..|+..|++..+.+..+.|..+..+.......
T Consensus 184 l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l--------- 253 (369)
T KOG0123|consen 184 LKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAEL--------- 253 (369)
T ss_pred HHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHH---------
Confidence 99999999999999999875 56699999999999999999999999999999999998775422110000
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchh
Q 002741 313 DGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKT 392 (885)
Q Consensus 313 ~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~ 392 (885)
+.......
T Consensus 254 ---------------------------------------------~~~~~~~~--------------------------- 261 (369)
T KOG0123|consen 254 ---------------------------------------------KRKFEQEF--------------------------- 261 (369)
T ss_pred ---------------------------------------------hhhhHhhh---------------------------
Confidence 00000000
Q ss_pred hhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEE
Q 002741 393 VNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472 (885)
Q Consensus 393 ~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV 472 (885)
..........+|||.||+..++.+.|+++|+.||.|.+++|+.+. .+.++|||||
T Consensus 262 ------------------------~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV 316 (369)
T KOG0123|consen 262 ------------------------AKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFV 316 (369)
T ss_pred ------------------------hhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEE
Confidence 000012334689999999999999999999999999999988875 6889999999
Q ss_pred EeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002741 473 KFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 473 ~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (885)
+|.+.++|.+|+..+| +..+.+++|.|.++..+
T Consensus 317 ~fs~~eeA~~A~~~~n-----~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 317 EFSSPEEAKKAMTEMN-----GRLIGGKPLYVAVAQRK 349 (369)
T ss_pred EcCCHHHHHHHHHhhC-----hhhhcCCchhhhHHhhh
Confidence 9999999999999999 99999999999998743
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.2e-34 Score=333.61 Aligned_cols=279 Identities=21% Similarity=0.267 Sum_probs=221.0
Q ss_pred CHHHHHHHHHHhCCceecCeeeeec---ccC--CCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCC
Q 002741 181 TVKSACASVALLHQKEIKGGTVWAR---QLG--GEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTG 255 (885)
Q Consensus 181 s~e~A~~Ai~~ln~~~i~g~~i~v~---~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g 255 (885)
..++|.+||..+++..+........ +.. ....+...++|||+|||.++++++|+++|+.||.|..|+|++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 4688999999888876644322211 111 1112345689999999999999999999999999999999998 789
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCceeC-CeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCC
Q 002741 256 LSKGFAFVKFTCKRDAESAIQKFNGQKFG-KRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASD 334 (885)
Q Consensus 256 ~~~g~afV~F~~~e~A~~Al~~lng~~i~-g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 334 (885)
.++|||||+|.+.++|++||+.||+..|. |+.|.|.++.
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~---------------------------------------- 136 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV---------------------------------------- 136 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc----------------------------------------
Confidence 99999999999999999999999999884 6766665431
Q ss_pred CCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCC
Q 002741 335 DSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKS 414 (885)
Q Consensus 335 ~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 414 (885)
T Consensus 137 -------------------------------------------------------------------------------- 136 (578)
T TIGR01648 137 -------------------------------------------------------------------------------- 136 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhccCCC
Q 002741 415 LKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVSFVPVL-HQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (885)
Q Consensus 415 ~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~-I~~v~i~~-~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~ 492 (885)
..++|||+|||.++++++|.++|+.++. +..+.++. ....++++|||||+|.++++|..|+..|+..
T Consensus 137 ---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g-- 205 (578)
T TIGR01648 137 ---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG-- 205 (578)
T ss_pred ---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc--
Confidence 0258999999999999999999999864 44443332 2235678999999999999999999988621
Q ss_pred CCeeecCeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCC
Q 002741 493 LGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPN 572 (885)
Q Consensus 493 ~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~ 572 (885)
...+.|+.|.|.|+.+...... .
T Consensus 206 -ki~l~Gr~I~VdwA~p~~~~d~--------------------------------------------------------~ 228 (578)
T TIGR01648 206 -RIQLWGHVIAVDWAEPEEEVDE--------------------------------------------------------D 228 (578)
T ss_pred -ceEecCceEEEEeecccccccc--------------------------------------------------------c
Confidence 3578999999999876421110 0
Q ss_pred CCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCC--CCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHH
Q 002741 573 FHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQK--PVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 650 (885)
Q Consensus 573 ~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~--G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~A 650 (885)
......+|||+|||.++|+++|+++|+ .| |.|..|+++ ++||||+|.++++|.+|
T Consensus 229 ~~~~~k~LfVgNL~~~~tee~L~~~F~---------~f~~G~I~rV~~~--------------rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 229 VMAKVKILYVRNLMTTTTEEIIEKSFS---------EFKPGKVERVKKI--------------RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ccccccEEEEeCCCCCCCHHHHHHHHH---------hcCCCceEEEEee--------------cCeEEEEeCCHHHHHHH
Confidence 001235799999999999999999999 48 999999766 57999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEcc
Q 002741 651 LRVLNNNPKTFGPEHRPIVEFAVD 674 (885)
Q Consensus 651 l~~lng~p~~~g~~~rliV~~A~e 674 (885)
|..||+. .+.| +.|.|.||..
T Consensus 286 i~~lnG~-~i~G--r~I~V~~Akp 306 (578)
T TIGR01648 286 MDELNGK-ELEG--SEIEVTLAKP 306 (578)
T ss_pred HHHhCCC-EECC--EEEEEEEccC
Confidence 9999997 4444 6777999964
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.6e-34 Score=303.56 Aligned_cols=262 Identities=25% Similarity=0.334 Sum_probs=220.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-CCeeEEEE
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKRPIAVD 291 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i-~g~~i~V~ 291 (885)
+...+.|||+.||.++.|++|.-+|+..|.|..++|+.|+.+|.++|||||.|.+.++|+.||+.||+.+| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999 69999998
Q ss_pred eecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002741 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (885)
Q Consensus 292 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~ 371 (885)
.+..
T Consensus 160 ~Sva---------------------------------------------------------------------------- 163 (506)
T KOG0117|consen 160 VSVA---------------------------------------------------------------------------- 163 (506)
T ss_pred Eeee----------------------------------------------------------------------------
Confidence 7631
Q ss_pred CCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC
Q 002741 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (885)
Q Consensus 372 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~ 451 (885)
+++|||+|||.++++++|.+.|++.++
T Consensus 164 -----------------------------------------------------n~RLFiG~IPK~k~keeIlee~~kVte 190 (506)
T KOG0117|consen 164 -----------------------------------------------------NCRLFIGNIPKTKKKEEILEEMKKVTE 190 (506)
T ss_pred -----------------------------------------------------cceeEeccCCccccHHHHHHHHHhhCC
Confidence 269999999999999999999999875
Q ss_pred -eeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccccccc
Q 002741 452 -VVSFVPVLHQV-TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHR 529 (885)
Q Consensus 452 -I~~v~i~~~~~-~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~ 529 (885)
|+.|.|...+. ..+++|||||+|.++..|..|...|-.. .+.|+|+.+.|.||.+...-....
T Consensus 191 GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g---~~klwgn~~tVdWAep~~e~ded~------------ 255 (506)
T KOG0117|consen 191 GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG---KIKLWGNAITVDWAEPEEEPDEDT------------ 255 (506)
T ss_pred CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC---ceeecCCcceeeccCcccCCChhh------------
Confidence 66665555443 4578999999999999999999888632 588999999999998764321000
Q ss_pred cchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccC
Q 002741 530 NLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQ 609 (885)
Q Consensus 530 ~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~ 609 (885)
+. .-..|||+||+.++|++.|+++|.+
T Consensus 256 ------------------------ms--------------------~VKvLYVRNL~~~tTeE~lk~~F~~--------- 282 (506)
T KOG0117|consen 256 ------------------------MS--------------------KVKVLYVRNLMESTTEETLKKLFNE--------- 282 (506)
T ss_pred ------------------------hh--------------------heeeeeeeccchhhhHHHHHHHHHh---------
Confidence 00 1136999999999999999999995
Q ss_pred CCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEcccHHHHHHHHHHHHH
Q 002741 610 KPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKIQA 688 (885)
Q Consensus 610 ~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~~~~~~~r~~~~q~ 688 (885)
||.|..|+.++| ||||.|.+.++|.+||..+||. .+-| ..|-|-+|..-.++...|...++.
T Consensus 283 ~G~veRVkk~rD--------------YaFVHf~eR~davkAm~~~ngk-eldG--~~iEvtLAKP~~k~k~~r~~~~~g 344 (506)
T KOG0117|consen 283 FGKVERVKKPRD--------------YAFVHFAEREDAVKAMKETNGK-ELDG--SPIEVTLAKPVDKKKKERKAMRQG 344 (506)
T ss_pred ccceEEeecccc--------------eeEEeecchHHHHHHHHHhcCc-eecC--ceEEEEecCChhhhccchhhhhcc
Confidence 999999988865 9999999999999999999997 6666 444499998766666655444433
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.9e-34 Score=306.19 Aligned_cols=337 Identities=25% Similarity=0.336 Sum_probs=230.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
.+|||++||+.++.++|.++|+.+|+|..|.++.+..++.++||+||.|.-.+|+++|+..+++..|.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 69999999999999999999999999999999999988899999999999999999999999999999999999999766
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCC
Q 002741 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (885)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~ 376 (885)
........ + .+ .+. .+.+.
T Consensus 86 ~r~e~~~~--~-e~--------------------~~v------------------------eK~~~-------------- 104 (678)
T KOG0127|consen 86 ARSEEVEK--G-EN--------------------KAV------------------------EKPIE-------------- 104 (678)
T ss_pred ccchhccc--c-cc--------------------hhh------------------------hcccc--------------
Confidence 42110000 0 00 000 00000
Q ss_pred chhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccC-CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 002741 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTE-GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~-~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
..++.. ....+...|.|+||||.+...+|..+|+.||.|..|
T Consensus 105 -------------------------------------q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei 147 (678)
T KOG0127|consen 105 -------------------------------------QKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI 147 (678)
T ss_pred -------------------------------------cCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE
Confidence 000000 012235699999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhh------hhhhccc-----
Q 002741 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKE------IDKSKNE----- 524 (885)
Q Consensus 456 ~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~------~~~~~~~----- 524 (885)
.|+....++. .|||||+|....+|..|++.+| +..|+||+|-|.||.++....... +.+....
T Consensus 148 ~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N-----~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 148 VIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFN-----GNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred EcccCCCCCc-cceEEEEEeeHHHHHHHHHhcc-----CceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 8887665554 4999999999999999999999 999999999999999986554322 1111110
Q ss_pred -ccccccchhhccCccc-------CC---------CCCCCCCChhhHHHHHHHHHHhhhccCC-CCCCcccceEEEcCCC
Q 002741 525 -TNDHRNLYLAKEGLIL-------EG---------TPAAEGVSDDDMSKRQMLHEKKMTKLQS-PNFHVSRTRLVIYNLP 586 (885)
Q Consensus 525 -~~~~~~~~l~~eg~~~-------~~---------sp~~~~~s~~d~~~r~~~~~~~~~~~~~-p~~~~s~~~L~V~NLP 586 (885)
..+...-+....+... ++ ......-...+.+........+...... +..-.-..+|||+|||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 0011110000000000 00 0000000000000000000000000000 1111123689999999
Q ss_pred cccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc---CCCCCCCC
Q 002741 587 KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN---NNPKTFGP 663 (885)
Q Consensus 587 ~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~ln---g~p~~~g~ 663 (885)
+++|+++|..+|+ .||.|..+.|+.++.|+ +++|.|||.|.+..+|..||.+.. +...+.-
T Consensus 302 fD~tEEel~~~fs---------kFG~v~ya~iV~~k~T~------~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll- 365 (678)
T KOG0127|consen 302 FDTTEEELKEHFS---------KFGEVKYAIIVKDKDTG------HSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL- 365 (678)
T ss_pred ccccHHHHHHHHH---------hhccceeEEEEeccCCC------CcccceEEEeccHHHHHHHHHhcCccCCCceEEE-
Confidence 9999999999999 59999999999999888 999999999999999999999872 2111111
Q ss_pred CCceE-EEEEc
Q 002741 664 EHRPI-VEFAV 673 (885)
Q Consensus 664 ~~rli-V~~A~ 673 (885)
..|++ |..|.
T Consensus 366 ~GR~Lkv~~Av 376 (678)
T KOG0127|consen 366 DGRLLKVTLAV 376 (678)
T ss_pred eccEEeeeecc
Confidence 24555 98886
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.4e-32 Score=319.77 Aligned_cols=322 Identities=25% Similarity=0.378 Sum_probs=220.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
....+|||+|||..+++++|+++|+.||.|..|.|+.+..+|.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999999899999999999999999999997 8999999999999876
Q ss_pred cCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002741 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (885)
Q Consensus 294 ~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~ 373 (885)
........... ..
T Consensus 166 ~~~~~~~~~~~------------------------------------------------------------~~------- 178 (457)
T TIGR01622 166 QAEKNRAAKAA------------------------------------------------------------TH------- 178 (457)
T ss_pred chhhhhhhhcc------------------------------------------------------------cc-------
Confidence 32210000000 00
Q ss_pred CCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCee
Q 002741 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (885)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~ 453 (885)
. ....+..++|||+|||+.+|+++|+++|+.||.|.
T Consensus 179 -------------------------~-------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~ 214 (457)
T TIGR01622 179 -------------------------Q-------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE 214 (457)
T ss_pred -------------------------c-------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE
Confidence 0 00011147999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhh--hhhcccccccccc
Q 002741 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEI--DKSKNETNDHRNL 531 (885)
Q Consensus 454 ~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~--~~~~~~~~~~~~~ 531 (885)
.|.++.+..+|.++|||||+|.+.++|..|+..|+ |..|.|++|.|.|+........... ...........++
T Consensus 215 ~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~-----g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (457)
T TIGR01622 215 DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMN-----GFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNL 289 (457)
T ss_pred EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcC-----CcEECCEEEEEEEccCCCccccchhhhccccccccCCcCC
Confidence 99999999899999999999999999999999999 9999999999999874321111000 0000000000000
Q ss_pred --------h--hhcc----CcccCCCCC-C---CCCChhh-----HHHH---HHH-HHHhhhccCCCCCCcccceEEEcC
Q 002741 532 --------Y--LAKE----GLILEGTPA-A---EGVSDDD-----MSKR---QML-HEKKMTKLQSPNFHVSRTRLVIYN 584 (885)
Q Consensus 532 --------~--l~~e----g~~~~~sp~-~---~~~s~~d-----~~~r---~~~-~~~~~~~~~~p~~~~s~~~L~V~N 584 (885)
. +... +...++... . ..+.... .... ... .......+...+...+..+|+|.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n 369 (457)
T TIGR01622 290 NTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSN 369 (457)
T ss_pred CccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEec
Confidence 0 0000 000111000 0 0000000 0000 000 000000111111234567899999
Q ss_pred CCcccC----------HHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 002741 585 LPKSMT----------EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 654 (885)
Q Consensus 585 LP~~vt----------e~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~l 654 (885)
|....+ .++|++.|. .||.|..|.|... .+.|++||+|.++++|..|++.|
T Consensus 370 ~~~~~~~~~~~~~~~~~~dv~~e~~---------k~G~v~~v~v~~~----------~~~G~~fV~F~~~e~A~~A~~~l 430 (457)
T TIGR01622 370 MFDPATEEEPNFDNEILDDVKEECS---------KYGGVVHIYVDTK----------NSAGKIYLKFSSVDAALAAFQAL 430 (457)
T ss_pred CCCCcccccchHHHHHHHHHHHHHH---------hcCCeeEEEEeCC----------CCceeEEEEECCHHHHHHHHHHh
Confidence 944333 246666666 5999999988743 46799999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEEcc
Q 002741 655 NNNPKTFGPEHRPIVEFAVD 674 (885)
Q Consensus 655 ng~p~~~g~~~rliV~~A~e 674 (885)
||. +|+ ++.+.|.|..+
T Consensus 431 nGr--~f~-gr~i~~~~~~~ 447 (457)
T TIGR01622 431 NGR--YFG-GKMITAAFVVN 447 (457)
T ss_pred cCc--ccC-CeEEEEEEEcH
Confidence 995 787 24444999964
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3.5e-32 Score=316.34 Aligned_cols=337 Identities=20% Similarity=0.279 Sum_probs=225.2
Q ss_pred cCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 002741 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (885)
Q Consensus 118 ~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i 197 (885)
.+..++|||+|||..+++++|.++|+.||.|..|.++.++ .+|.++|||||+|.+.++|.+|+. |++..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~---------~~~~skg~afVeF~~~e~A~~Al~-l~g~~~ 155 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR---------NSRRSKGVAYVEFYDVESVIKALA-LTGQML 155 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC---------CCCCcceEEEEEECCHHHHHHHHH-hCCCEE
Confidence 4568899999999999999999999999999999998875 478999999999999999999996 899999
Q ss_pred cCeeeeecccCCC------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEe
Q 002741 198 KGGTVWARQLGGE------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKF 265 (885)
Q Consensus 198 ~g~~i~v~~~~~~------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F 265 (885)
.|..|.+...... .......+|||+|||..+|+++|+++|+.||.|..|.|+.+..+|.++|||||+|
T Consensus 156 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f 235 (457)
T TIGR01622 156 LGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQF 235 (457)
T ss_pred CCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEE
Confidence 9999987543211 1112357999999999999999999999999999999999988889999999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCC
Q 002741 266 TCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLP 345 (885)
Q Consensus 266 ~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~ 345 (885)
.+.++|..|+..|||..|.|++|.|.|+.............. .... ....+..
T Consensus 236 ~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~---~~~~-----------~~~~~~~------------- 288 (457)
T TIGR01622 236 HDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFE---DIDK-----------QQQMGKN------------- 288 (457)
T ss_pred CCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhc---cccc-----------cccCCcC-------------
Confidence 999999999999999999999999999863221111100000 0000 0000000
Q ss_pred CCCCchhHHHHHHHHhhhcc-cCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCcc--ccCCCC
Q 002741 346 SNADFDEEVDIARKVLNKLT-STTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLK--QTEGED 422 (885)
Q Consensus 346 ~~~~f~~~~~~~~~~~~~~~-~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k--~~~~~~ 422 (885)
..... .......+.... ...+.+|.... ....+....... .. .......+............ ......
T Consensus 289 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (457)
T TIGR01622 289 --LNTEE-REQLMEKLDRDDGDGGLLIPGTGS-KIALMQKLQRDG-II----DPNIPSRYATGALAIMARNSFVPSTNNN 359 (457)
T ss_pred --CCccc-hHHHHHhhccCCCCccccCCCccc-hhhhhccccccc-cc----cccccccccccccccccCCCCCCcccCC
Confidence 00000 000000000000 00000111000 000000000000 00 00000000000000000000 000123
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCC
Q 002741 423 ELQNTIFICNLPFDLD----------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSG 492 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~t----------ee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~ 492 (885)
...++|+|.||....+ .++|++.|++||.|..|.|.. ....|++||+|.+.++|.+|+..||
T Consensus 360 ~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~ln---- 431 (457)
T TIGR01622 360 LATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALN---- 431 (457)
T ss_pred CCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhc----
Confidence 4578999999965544 368999999999999997753 3457999999999999999999999
Q ss_pred CCeeecCeEEEEEEccC
Q 002741 493 LGIFLKGRQLTVLKALD 509 (885)
Q Consensus 493 ~g~~l~gr~l~V~~a~~ 509 (885)
|..|+|+.|.|.|...
T Consensus 432 -Gr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 432 -GRYFGGKMITAAFVVN 447 (457)
T ss_pred -CcccCCeEEEEEEEcH
Confidence 9999999999999764
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.5e-31 Score=315.35 Aligned_cols=277 Identities=21% Similarity=0.245 Sum_probs=210.6
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHHhcC------------CCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHH
Q 002741 117 KQRVARTVIIGGLLNADMAEEVHRLAGSI------------GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKS 184 (885)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~ 184 (885)
.....++|||||||+.+++++|.++|..+ +.|..+.+ +..+|||||+|.+.++
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---------------~~~kg~afVeF~~~e~ 235 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---------------NKEKNFAFLEFRTVEE 235 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---------------CCCCCEEEEEeCCHHH
Confidence 34568999999999999999999999975 24444444 4567999999999999
Q ss_pred HHHHHHHhCCceecCeeeeecccCCCC-----------------------------CCCCCcEEEEcCCCCCCCHHHHHH
Q 002741 185 ACASVALLHQKEIKGGTVWARQLGGEG-----------------------------SKTQKWKLIIRNIPFKAKVNEIKD 235 (885)
Q Consensus 185 A~~Ai~~ln~~~i~g~~i~v~~~~~~~-----------------------------~~~~~~~l~V~nLp~~~te~~L~~ 235 (885)
|..||. |++..|.|..|.+.....-. ......+|||+|||..+++++|++
T Consensus 236 A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 236 ATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred Hhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 999994 99999999999885321100 112346899999999999999999
Q ss_pred hhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCC
Q 002741 236 MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGN 315 (885)
Q Consensus 236 ~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~ 315 (885)
+|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+.|.|.++............
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~---------- 384 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTS---------- 384 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccc----------
Confidence 9999999999999999889999999999999999999999999999999999999998543210000000
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhh
Q 002741 316 SDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNE 395 (885)
Q Consensus 316 ~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~ 395 (885)
........ .. ..+ .
T Consensus 385 ---------------------------~~~~~~~~-------------~~---~~~----~------------------- 398 (509)
T TIGR01642 385 ---------------------------NGMAPVTL-------------LA---KAL----S------------------- 398 (509)
T ss_pred ---------------------------cccccccc-------------cc---ccc----h-------------------
Confidence 00000000 00 000 0
Q ss_pred hcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCC----------CHHHHHHHHhccCCeeEEEEeecC---C
Q 002741 396 SAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL----------DNEEVKQRFSAFGEVVSFVPVLHQ---V 462 (885)
Q Consensus 396 ~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~----------tee~L~~~F~~fG~I~~v~i~~~~---~ 462 (885)
.... .....+..+|+|.||.... ..++|+++|++||.|..|.|+.+. .
T Consensus 399 -~~~~------------------~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 399 -QSIL------------------QIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred -hhhc------------------cccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 0000 0012235689999996421 236899999999999999887642 3
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccC
Q 002741 463 TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (885)
Q Consensus 463 ~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (885)
++...|+|||+|.+.++|.+|+..|| |..|+|+.|.|.|...
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~ln-----Gr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMN-----GRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEEeCH
Confidence 45568999999999999999999999 9999999999999753
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.8e-30 Score=299.08 Aligned_cols=179 Identities=25% Similarity=0.446 Sum_probs=155.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
..++|||+|||+++++++|+++|+.||.|.+|.|+.+..+|+++|||||+|.+.++|.+|+..|||..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999998542
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002741 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (885)
Q Consensus 295 ~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~ 374 (885)
...... . . ... .
T Consensus 186 ~~p~a~---~---------------------------------------------~----------~~~-~--------- 197 (612)
T TIGR01645 186 NMPQAQ---P---------------------------------------------I----------IDM-V--------- 197 (612)
T ss_pred cccccc---c---------------------------------------------c----------ccc-c---------
Confidence 111000 0 0 000 0
Q ss_pred CCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE
Q 002741 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (885)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~ 454 (885)
.......++|||+|||+++++++|+++|+.||.|.+
T Consensus 198 --------------------------------------------~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~s 233 (612)
T TIGR01645 198 --------------------------------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVK 233 (612)
T ss_pred --------------------------------------------cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeE
Confidence 001112368999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002741 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 455 v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (885)
|+|+.+..++.++|||||+|.+.++|.+|+..|| ++.|+|+.|.|.++.+.
T Consensus 234 vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN-----g~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 234 CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTP 284 (612)
T ss_pred EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC-----CCeeCCeEEEEEecCCC
Confidence 9999999999999999999999999999999999 99999999999999864
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=6.3e-30 Score=294.61 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=154.7
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
...++|||+|||+.+++++|+++|..||.|.+|.++.++ .+|+++|||||+|.+.++|..|+..||+..|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~---------~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---------ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC---------CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 467899999999999999999999999999999998875 47899999999999999999999999999999
Q ss_pred CeeeeecccCCCC-----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecC
Q 002741 199 GGTVWARQLGGEG-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (885)
Q Consensus 199 g~~i~v~~~~~~~-----------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~ 267 (885)
|+.|.|....... .....++|||+|||+++++++|+++|+.||.|.+|+|+++..+|.++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 9999986533211 01234799999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 002741 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (885)
Q Consensus 268 ~e~A~~Al~~lng~~i~g~~i~V~~a~~k~ 297 (885)
.++|..||..||+..|+|+.|+|.++.+..
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999999998654
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.98 E-value=1.9e-30 Score=306.00 Aligned_cols=309 Identities=19% Similarity=0.256 Sum_probs=209.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCC------------CCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPV------------GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (885)
....++|||+|||+.+|+++|.++|..| +.|..+.+.. .+|||||+|.+.++|..||. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~------~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK------EKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC------CCCEEEEEeCCHHHHhhhhc-CCC
Confidence 3456799999999999999999999974 3445444433 67999999999999999995 999
Q ss_pred ceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHH
Q 002741 281 QKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKV 360 (885)
Q Consensus 281 ~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~ 360 (885)
..|.|+.|.|.............. .. .. ..+ ....
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~--~~-------~~-------------------------~~~-~~~~---------- 279 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITP--EV-------SQ-------------------------KNP-DDNA---------- 279 (509)
T ss_pred eEeeCceeEecCccccCCccccCC--CC-------CC-------------------------CCC-cccc----------
Confidence 999999999975422110000000 00 00 000 0000
Q ss_pred hhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHH
Q 002741 361 LNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNE 440 (885)
Q Consensus 361 ~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee 440 (885)
.. ... ...........++|||+|||+.+|++
T Consensus 280 -~~--------------------------------------~~~----------~~~~~~~~~~~~~l~v~nlp~~~~~~ 310 (509)
T TIGR01642 280 -KN--------------------------------------VEK----------LVNSTTVLDSKDRIYIGNLPLYLGED 310 (509)
T ss_pred -cc--------------------------------------ccc----------ccccccCCCCCCEEEEeCCCCCCCHH
Confidence 00 000 00000011234799999999999999
Q ss_pred HHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhh
Q 002741 441 EVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDK 520 (885)
Q Consensus 441 ~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~ 520 (885)
+|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..||..|+ |..|+|+.|.|.+|..........
T Consensus 311 ~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~-----g~~~~~~~l~v~~a~~~~~~~~~~--- 382 (509)
T TIGR01642 311 QIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALN-----GKDTGDNKLHVQRACVGANQATID--- 382 (509)
T ss_pred HHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcC-----CCEECCeEEEEEECccCCCCCCcc---
Confidence 999999999999999999999999999999999999999999999999 999999999999986432111000
Q ss_pred hcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcc--c--------C
Q 002741 521 SKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS--M--------T 590 (885)
Q Consensus 521 ~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~--v--------t 590 (885)
..+ +.. +.......+. .. .... ...+..+|+|.||+.. + .
T Consensus 383 -------~~~------~~~-~~~~~~~~~~-----------~~-~~~~----~~~~s~v~~l~N~~~~~~l~~d~~~~~~ 432 (509)
T TIGR01642 383 -------TSN------GMA-PVTLLAKALS-----------QS-ILQI----GGKPTKVVQLTNLVTGDDLMDDEEYEEI 432 (509)
T ss_pred -------ccc------ccc-ccccccccch-----------hh-hccc----cCCCceEEEeccCCchhHhcCcchHHHH
Confidence 000 000 0000000000 00 0000 0123468999999642 1 2
Q ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEE
Q 002741 591 EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVE 670 (885)
Q Consensus 591 e~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~ 670 (885)
.++|+++|. .||.|..|.|+++.... ..+.+.|+|||+|.++++|..||..|||. .|+ ++.++|.
T Consensus 433 ~edl~~~f~---------~~G~v~~v~i~~~~~~~---~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~-gr~v~~~ 497 (509)
T TIGR01642 433 YEDVKTEFS---------KYGPLINIVIPRPNGDR---NSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFN-DRVVVAA 497 (509)
T ss_pred HHHHHHHHH---------hcCCeeEEEeeccCcCC---CcCCCcceEEEEECCHHHHHHHHHHcCCC--EEC-CeEEEEE
Confidence 367888998 49999999999753221 12356899999999999999999999996 565 4777799
Q ss_pred EEccc
Q 002741 671 FAVDN 675 (885)
Q Consensus 671 ~A~e~ 675 (885)
|..++
T Consensus 498 ~~~~~ 502 (509)
T TIGR01642 498 FYGED 502 (509)
T ss_pred EeCHH
Confidence 99754
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.6e-31 Score=263.03 Aligned_cols=232 Identities=27% Similarity=0.459 Sum_probs=190.8
Q ss_pred CCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 002741 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (885)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (885)
..||||||||.+.+|++-|..||..+|.|..++++.+..
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------------------------------- 43 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------------------------------- 43 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-----------------------------------------
Confidence 568999999999999999999999999999999975410
Q ss_pred eeeeecccCCC--CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 002741 200 GTVWARQLGGE--GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (885)
Q Consensus 200 ~~i~v~~~~~~--~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 277 (885)
+.+|....... ........|||+.|...++-+.|++.|.+||+|.+++|++|..+++++||+||.|-+.++|++||..
T Consensus 44 ~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~ 123 (321)
T KOG0148|consen 44 KVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ 123 (321)
T ss_pred ccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH
Confidence 01122111111 1122345799999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHH
Q 002741 278 FNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIA 357 (885)
Q Consensus 278 lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~ 357 (885)
|||.-|++|.|+-.|+..+...... ....|+.
T Consensus 124 MnGqWlG~R~IRTNWATRKp~e~n~-------------------------------------------~~ltfde----- 155 (321)
T KOG0148|consen 124 MNGQWLGRRTIRTNWATRKPSEMNG-------------------------------------------KPLTFDE----- 155 (321)
T ss_pred hCCeeeccceeeccccccCccccCC-------------------------------------------CCccHHH-----
Confidence 9999999999999999876511000 0001110
Q ss_pred HHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCC
Q 002741 358 RKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL 437 (885)
Q Consensus 358 ~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~ 437 (885)
++++ ..+.+++|||+||+..+
T Consensus 156 --V~NQ---------------------------------------------------------ssp~NtsVY~G~I~~~l 176 (321)
T KOG0148|consen 156 --VYNQ---------------------------------------------------------SSPDNTSVYVGNIASGL 176 (321)
T ss_pred --Hhcc---------------------------------------------------------CCCCCceEEeCCcCccc
Confidence 0000 22346899999999999
Q ss_pred CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002741 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 438 tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (885)
|+++|++.|++||.|..|+|..+ +||+||.|.+.|.|.+||..+| +..|.|+.++|.|.+..
T Consensus 177 te~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mN-----ntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 177 TEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMN-----NTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhc-----CceeCceEEEEeccccC
Confidence 99999999999999999999877 7999999999999999999999 99999999999998754
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=271.78 Aligned_cols=376 Identities=22% Similarity=0.322 Sum_probs=241.0
Q ss_pred CCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCC-ceec
Q 002741 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ-KEIK 198 (885)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~-~~i~ 198 (885)
..-.+|||-||..++|.||+.+|++||.|.+|.|++|| .+|.++|||||.|.+.++|.+|+.+||+ +.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk---------~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDK---------STGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccc---------ccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 45679999999999999999999999999999999998 6899999999999999999999999976 4566
Q ss_pred Ce--eeeecccCCCCCC-CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 002741 199 GG--TVWARQLGGEGSK-TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (885)
Q Consensus 199 g~--~i~v~~~~~~~~~-~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al 275 (885)
|. +|.|+....+... ...++|||+-|+..+||.+|+++|++||.|++|.|+++. .+.++|||||.|.+.+.|..||
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHH
Confidence 64 6677766554333 457899999999999999999999999999999999985 6889999999999999999999
Q ss_pred HHhCCce-e--CCeeEEEEeecCCCCCCCCCc-------------cccccCC------------------CCCC------
Q 002741 276 QKFNGQK-F--GKRPIAVDWAVPKNIYSSGGA-------------AAGVQNK------------------GDGN------ 315 (885)
Q Consensus 276 ~~lng~~-i--~g~~i~V~~a~~k~~~~~~~~-------------~~~~~~~------------------~~~~------ 315 (885)
+.|||.. + +..+|.|.|+.+++....... .....+. ...+
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g 262 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGG 262 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCccccc
Confidence 9999975 4 456899999988754432110 0000000 0000
Q ss_pred -CCCCCCCC-----------CCCCcccCCCCCCC-------CccccCCC------CCCCch-----hHHHHHHHHhhhcc
Q 002741 316 -SDSGSDDD-----------LGDDDAETASDDSN-------SSEKEDLP------SNADFD-----EEVDIARKVLNKLT 365 (885)
Q Consensus 316 -~~~~~d~~-----------~~~~~~~~~~~~~~-------~~e~~~~~------~~~~f~-----~~~~~~~~~~~~~~ 365 (885)
..-+.-.. -.........+-.. .......+ ...... ...-.++..+....
T Consensus 263 ~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~ 342 (510)
T KOG0144|consen 263 LPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTP 342 (510)
T ss_pred ccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCc
Confidence 00000000 00000000000000 00000000 000000 00011111111111
Q ss_pred c---CCCCCCCCCC--chhhc------cCCCCCCcchhhhhhcccccc-------ccc----ccCCCCCCCccccCCCCC
Q 002741 366 S---TTGSLPSLSD--DSALV------KGNKEQDSDKTVNESAKVSDV-------SKL----NSSKSKPKSLKQTEGEDE 423 (885)
Q Consensus 366 ~---~~g~~p~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~-------~p~----~~~~~~~~~~k~~~~~~~ 423 (885)
. ..+.+.+... ..... .+........-..--..+... .|- +......-..-.-..+.+
T Consensus 343 ~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGp 422 (510)
T KOG0144|consen 343 ANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGP 422 (510)
T ss_pred hhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCC
Confidence 0 1111111000 00000 011000000000000000000 000 000000000011123677
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
.+.+|||.+||.+.-+.+|-..|..||.|.+..+..|+.|+.++.|+||.|++..+|..||..|| |+.++++.|.
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amn-----gfQig~Krlk 497 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMN-----GFQIGSKRLK 497 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhc-----chhhccccce
Confidence 88999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 002741 504 VLKALDK 510 (885)
Q Consensus 504 V~~a~~k 510 (885)
|....++
T Consensus 498 VQlk~~~ 504 (510)
T KOG0144|consen 498 VQLKRDR 504 (510)
T ss_pred EEeeecc
Confidence 9987655
No 26
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=4.3e-31 Score=295.26 Aligned_cols=366 Identities=20% Similarity=0.290 Sum_probs=274.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhh-------------hhcccchhhhhhhhhcccCCCC
Q 002741 11 RGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQR-------------RSKVTQEVQAEDIEKTMDNKDG 77 (885)
Q Consensus 11 rG~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 77 (885)
+=||||.|..+++|.+|...++|..|+||.|+|.++..+....+. -..+........||++++..+.
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~a 325 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANA 325 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccH
Confidence 447999999999999999999999999999999998776544311 1112233456789888888877
Q ss_pred ccccccccchhhhhcCCC-----------------CCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHH
Q 002741 78 VISGAEKHSSKLLESGKT-----------------VKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHR 140 (885)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~-----------------~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~ 140 (885)
.+...+...++.+.--.. +...+. -+.....+-..++...+..+-|+|+|||..+..++|..
T Consensus 326 va~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~-~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~ 404 (725)
T KOG0110|consen 326 VAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRR-FFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTE 404 (725)
T ss_pred HHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhh-hHHhhCcccccchhhhhhcceeeeccCccccccHHHHH
Confidence 776655544444310000 000000 00111111122445667788999999999999999999
Q ss_pred HHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeeeeecccCC-----------
Q 002741 141 LAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGG----------- 209 (885)
Q Consensus 141 ~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~----------- 209 (885)
+|..||+|..|.+|. .|. -|+|.|.++.+|.+|+..|.+..+...++++...+.
T Consensus 405 ~F~~fG~i~rvllp~------------~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~ 469 (725)
T KOG0110|consen 405 AFLRFGEIGRVLLPP------------GGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADD 469 (725)
T ss_pred HhhcccccceeecCc------------ccc---eeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccc
Confidence 999999999996641 232 499999999999999999999888777665321100
Q ss_pred -------C-------------------CC-------------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcc
Q 002741 210 -------E-------------------GS-------------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH 250 (885)
Q Consensus 210 -------~-------------------~~-------------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~ 250 (885)
. .. ....++|||+||++++|.++|..+|..+|.|.++.|..
T Consensus 470 ~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~k 549 (725)
T KOG0110|consen 470 LSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISK 549 (725)
T ss_pred cccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEec
Confidence 0 00 01123499999999999999999999999999998876
Q ss_pred cCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 002741 251 NTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDD 327 (885)
Q Consensus 251 ~~~~---g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 327 (885)
.+.. -.+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.++..+..-. . +
T Consensus 550 kkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~--~---g-------------------- 604 (725)
T KOG0110|consen 550 KKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST--V---G-------------------- 604 (725)
T ss_pred cccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc--c---c--------------------
Confidence 5422 1356999999999999999999999999999999999985111000 0 0
Q ss_pred cccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhccccccccccc
Q 002741 328 DAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNS 407 (885)
Q Consensus 328 ~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (885)
+
T Consensus 605 -------------K------------------------------------------------------------------ 605 (725)
T KOG0110|consen 605 -------------K------------------------------------------------------------------ 605 (725)
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 002741 408 SKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (885)
Q Consensus 408 ~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~l 487 (885)
.. ......+.|+|+|||+.++..+|+.+|..||.|.+|+|+.....+.++|||||.|-++.+|.+|+.+|
T Consensus 606 -------~~---~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 606 -------KK---SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred -------cc---ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 00 01112468999999999999999999999999999999877556677999999999999999999999
Q ss_pred ccCCCCCeeecCeEEEEEEccChh
Q 002741 488 KTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 488 n~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
. ...|.||.|.+.||..-.
T Consensus 676 ~-----STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 676 G-----STHLYGRRLVLEWAKSDN 694 (725)
T ss_pred c-----ccceechhhheehhccch
Confidence 9 899999999999997643
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=8.5e-30 Score=269.05 Aligned_cols=173 Identities=27% Similarity=0.414 Sum_probs=149.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce-e--CCeeEEE
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK-F--GKRPIAV 290 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~-i--~g~~i~V 290 (885)
.+.-++||+-||..++|.||+++|++||.|.+|.|++|+.+|.++|||||.|.+.++|.+|+.+|+... | ..++|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 455689999999999999999999999999999999999999999999999999999999999998764 4 4568888
Q ss_pred EeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002741 291 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 370 (885)
Q Consensus 291 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~ 370 (885)
.|+.....
T Consensus 112 k~Ad~E~e------------------------------------------------------------------------ 119 (510)
T KOG0144|consen 112 KYADGERE------------------------------------------------------------------------ 119 (510)
T ss_pred cccchhhh------------------------------------------------------------------------
Confidence 88742210
Q ss_pred CCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccC
Q 002741 371 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG 450 (885)
Q Consensus 371 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG 450 (885)
.....+.|||+-|+..+||.+|+++|++||
T Consensus 120 --------------------------------------------------r~~~e~KLFvg~lsK~~te~evr~iFs~fG 149 (510)
T KOG0144|consen 120 --------------------------------------------------RIVEERKLFVGMLSKQCTENEVREIFSRFG 149 (510)
T ss_pred --------------------------------------------------ccccchhhhhhhccccccHHHHHHHHHhhC
Confidence 001236899999999999999999999999
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChhhh
Q 002741 451 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKKLA 513 (885)
Q Consensus 451 ~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g--r~l~V~~a~~k~~~ 513 (885)
.|++|.|+++. .+.++|||||+|.+.+.|..||++||+ ...+.| .+|.|.||.++...
T Consensus 150 ~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng----~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 150 HIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNG----TQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ccchhhheecc-cccccceeEEEEehHHHHHHHHHhhcc----ceeeccCCCceEEEecccCCCc
Confidence 99999999886 688999999999999999999999993 245655 58999999986544
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.8e-29 Score=247.36 Aligned_cols=178 Identities=24% Similarity=0.391 Sum_probs=149.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002741 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~ 505 (885)
..|||+.|...++-++|++.|.+||+|..++|++|..|++++|||||.|.+.++|+.||..|| |..|++|.|+-.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-----GqWlG~R~IRTN 137 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-----GQWLGRRTIRTN 137 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-----Ceeeccceeecc
Confidence 479999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCC
Q 002741 506 KALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL 585 (885)
Q Consensus 506 ~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NL 585 (885)
||..|..... +. .++-.+. -...+| ..|+|||.||
T Consensus 138 WATRKp~e~n--------------------------~~----~ltfdeV-----------~NQssp----~NtsVY~G~I 172 (321)
T KOG0148|consen 138 WATRKPSEMN--------------------------GK----PLTFDEV-----------YNQSSP----DNTSVYVGNI 172 (321)
T ss_pred ccccCccccC--------------------------CC----CccHHHH-----------hccCCC----CCceEEeCCc
Confidence 9976641110 00 0000000 001112 3589999999
Q ss_pred CcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCC
Q 002741 586 PKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEH 665 (885)
Q Consensus 586 P~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~ 665 (885)
+.-+||++|++.|+ +||.|..|++.++ +||+||.|.++|.|..||..+||. .+-|
T Consensus 173 ~~~lte~~mr~~Fs---------~fG~I~EVRvFk~------------qGYaFVrF~tkEaAahAIv~mNnt-ei~G--- 227 (321)
T KOG0148|consen 173 ASGLTEDLMRQTFS---------PFGPIQEVRVFKD------------QGYAFVRFETKEAAAHAIVQMNNT-EIGG--- 227 (321)
T ss_pred CccccHHHHHHhcc---------cCCcceEEEEecc------------cceEEEEecchhhHHHHHHHhcCc-eeCc---
Confidence 99999999999999 7999999999976 899999999999999999999997 5554
Q ss_pred ceE-EEEEcccHHH
Q 002741 666 RPI-VEFAVDNVQT 678 (885)
Q Consensus 666 rli-V~~A~e~~~~ 678 (885)
.++ |.|..+....
T Consensus 228 ~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 228 QLVRCSWGKEGDDG 241 (321)
T ss_pred eEEEEeccccCCCC
Confidence 666 9999765433
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=3.1e-27 Score=260.17 Aligned_cols=172 Identities=26% Similarity=0.468 Sum_probs=155.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~ 291 (885)
.....++|||+|||+++|+++|+++|+.||.|..|+|+.+..++.++|||||+|.++++|..||+.||+..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002741 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (885)
Q Consensus 292 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~ 371 (885)
|+.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 9754210
Q ss_pred CCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC
Q 002741 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (885)
Q Consensus 372 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~ 451 (885)
....++|||.|||..+|+++|+++|++||.
T Consensus 190 --------------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 190 --------------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred --------------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 001258999999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC--eEEEEEEccChh
Q 002741 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQLTVLKALDKK 511 (885)
Q Consensus 452 I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g--r~l~V~~a~~k~ 511 (885)
|..|.|+.+..++.++|||||+|.+.++|.+||+.|| +..|.| ++|.|.+|....
T Consensus 220 V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln-----g~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 220 IVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN-----NVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC-----CCccCCCceeEEEEECCccc
Confidence 9999999999999999999999999999999999999 888865 799999987653
No 30
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=5.5e-27 Score=258.22 Aligned_cols=172 Identities=24% Similarity=0.340 Sum_probs=152.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 421 ~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
.....++|||+|||+++|+++|+++|+.||.|+.|+|+.+..+++++|||||+|.+.++|.+||+.|+ +..|.++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~Ln-----G~~l~gr 177 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLN-----GITVRNK 177 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcC-----CCccCCc
Confidence 44567899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceE
Q 002741 501 QLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRL 580 (885)
Q Consensus 501 ~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L 580 (885)
+|.|.|+.+.... ...++|
T Consensus 178 ~i~V~~a~p~~~~-------------------------------------------------------------~~~~~l 196 (346)
T TIGR01659 178 RLKVSYARPGGES-------------------------------------------------------------IKDTNL 196 (346)
T ss_pred eeeeecccccccc-------------------------------------------------------------ccccee
Confidence 9999997542100 013579
Q ss_pred EEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCC
Q 002741 581 VIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKT 660 (885)
Q Consensus 581 ~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~ 660 (885)
||.|||..+|+++|+++|+ .||.|..|+|+++..++ .++|||||+|.++++|.+||+.||+. .+
T Consensus 197 fV~nLp~~vtee~L~~~F~---------~fG~V~~v~i~~d~~tg------~~kG~aFV~F~~~e~A~~Ai~~lng~-~~ 260 (346)
T TIGR01659 197 YVTNLPRTITDDQLDTIFG---------KYGQIVQKNILRDKLTG------TPRGVAFVRFNKREEAQEAISALNNV-IP 260 (346)
T ss_pred EEeCCCCcccHHHHHHHHH---------hcCCEEEEEEeecCCCC------ccceEEEEEECCHHHHHHHHHHhCCC-cc
Confidence 9999999999999999999 49999999999998776 88999999999999999999999996 44
Q ss_pred CCCCCceEEEEEcc
Q 002741 661 FGPEHRPIVEFAVD 674 (885)
Q Consensus 661 ~g~~~rliV~~A~e 674 (885)
.+..+.|.|.||.+
T Consensus 261 ~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 261 EGGSQPLTVRLAEE 274 (346)
T ss_pred CCCceeEEEEECCc
Confidence 55445566999964
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.93 E-value=1.5e-23 Score=220.57 Aligned_cols=417 Identities=20% Similarity=0.279 Sum_probs=269.0
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhC--Cce
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLH--QKE 196 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln--~~~ 196 (885)
..++.|.++|||++++|.||..++..||.|..+.+.. |++ .||++|.+.++|...+.... ...
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk-------------Gkn--QAflem~d~~sAvtmv~~y~~~~p~ 90 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK-------------GKN--QAFLEMADEESAVTMVNYYTSVTPV 90 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeec-------------cch--hhhhhhcchhhhhheeecccccCcc
Confidence 3678899999999999999999999999999988733 333 79999999999887433221 123
Q ss_pred ecCeeeeecccC----------------------------------------CCCCCCCCcEEEEcCCCCCCCHHHHHHh
Q 002741 197 IKGGTVWARQLG----------------------------------------GEGSKTQKWKLIIRNIPFKAKVNEIKDM 236 (885)
Q Consensus 197 i~g~~i~v~~~~----------------------------------------~~~~~~~~~~l~V~nLp~~~te~~L~~~ 236 (885)
+.|.+|++.... ....+..--+++|.|+-+.++-+-|..+
T Consensus 91 lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqv 170 (492)
T KOG1190|consen 91 LRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQV 170 (492)
T ss_pred ccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHH
Confidence 445555442110 0011122347889999999999999999
Q ss_pred hcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEeecCCCCCCCCCccccccCCCCC
Q 002741 237 FSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDG 314 (885)
Q Consensus 237 F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i--~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~ 314 (885)
|+.||.|..|.-.... ..-.|+|+|.+.+.|..|-..|+|..| +.+.|+|+|+.-...........
T Consensus 171 FS~fG~VlKIiTF~Kn----n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndk-------- 238 (492)
T KOG1190|consen 171 FSKFGFVLKIITFTKN----NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDK-------- 238 (492)
T ss_pred HhhcceeEEEEEEecc----cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccc--------
Confidence 9999999987655431 223499999999999999999999998 56788998886543332222100
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhc-ccCCCCCCCCCCchhhccCCCCCCcchhh
Q 002741 315 NSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKL-TSTTGSLPSLSDDSALVKGNKEQDSDKTV 393 (885)
Q Consensus 315 ~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~-~~~~g~~p~~~~~~~~~~~~~~~~~~~~~ 393 (885)
+.|...- ..+.. +... .+..+ ...++.+|.... .+.......
T Consensus 239 ----SRDyTnp-----------------~LP~g-d~~p-------~l~~~~~aa~~~~~~~~g---~p~aip~~~----- 281 (492)
T KOG1190|consen 239 ----SRDYTNP-----------------DLPVG-DGQP-------SLDQLMAAAFGSVPAVHG---APLAIPSGA----- 281 (492)
T ss_pred ----cccccCC-----------------CCCCC-cccc-------ccchhhhccccccccccC---CcccCCccc-----
Confidence 0000000 00000 0000 00110 111111111100 000000000
Q ss_pred hhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCC-CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEE
Q 002741 394 NESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPF-DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFL 472 (885)
Q Consensus 394 ~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~-~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV 472 (885)
..+... ..+- .... -+..|.|.||.. .+|.+-|..+|+.||.|..|.|+.++ +.-|+|
T Consensus 282 ---------~~a~~a-----~~~~-~~~~-~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALI 340 (492)
T KOG1190|consen 282 ---------AGANAA-----DGKI-ESPS-ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALI 340 (492)
T ss_pred ---------hhhccc-----cccc-ccCC-CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----Ccceee
Confidence 000000 0000 0000 146888888854 58999999999999999999998775 457999
Q ss_pred EeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChh
Q 002741 473 KFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDD 552 (885)
Q Consensus 473 ~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~ 552 (885)
.|.+...|.-|+..|+ |..|.|++|+|.+++- .++.+..+|....+-... ...+
T Consensus 341 Qmsd~~qAqLA~~hL~-----g~~l~gk~lrvt~SKH-------------------~~vqlp~egq~d~glT~d--y~~s 394 (492)
T KOG1190|consen 341 QMSDGQQAQLAMEHLE-----GHKLYGKKLRVTLSKH-------------------TNVQLPREGQEDQGLTKD--YGNS 394 (492)
T ss_pred eecchhHHHHHHHHhh-----cceecCceEEEeeccC-------------------ccccCCCCCCcccccccc--CCCC
Confidence 9999999999999999 9999999999999752 334444444332222211 1112
Q ss_pred hHHHHHHHHHHhhhccCC-CCCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCC
Q 002741 553 DMSKRQMLHEKKMTKLQS-PNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKH 631 (885)
Q Consensus 553 d~~~r~~~~~~~~~~~~~-p~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~ 631 (885)
.+.+ -++...++ .+.+.+..+|++.|+|.+++|++|+.+|.+ +-|.|...++..
T Consensus 395 pLhr------fkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~--------~g~~vkafkff~----------- 449 (492)
T KOG1190|consen 395 PLHR------FKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE--------PGGQVKAFKFFQ----------- 449 (492)
T ss_pred chhh------ccCcccccccccCCchhheeeccCCcccchhHHHHhhhc--------CCceEEeeeecC-----------
Confidence 2221 11112222 223445678999999999999999999996 455556555543
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEc
Q 002741 632 YSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAV 673 (885)
Q Consensus 632 ~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~ 673 (885)
..+-+|++.+.++|+|..|+-.++++ ..|.+.++-|.|+.
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh--~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNH--YLGENHHLRVSFSK 489 (492)
T ss_pred CCcceeecccCChhHhhhhccccccc--cCCCCceEEEEeec
Confidence 34679999999999999999999995 56766777799984
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.8e-23 Score=214.68 Aligned_cols=178 Identities=27% Similarity=0.501 Sum_probs=153.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
-++|||+.|.+.+.|+.|+..|..||+|.+|.+..|+.+++.+|||||+|+-+|.|..|++.|||..++||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999973 2
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002741 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (885)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~ 375 (885)
.+... +.+.++.+-
T Consensus 191 sNmpQ--------------------------------------------------------AQpiID~vq---------- 204 (544)
T KOG0124|consen 191 SNMPQ--------------------------------------------------------AQPIIDMVQ---------- 204 (544)
T ss_pred CCCcc--------------------------------------------------------cchHHHHHH----------
Confidence 22100 000000000
Q ss_pred CchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 002741 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
+ +...-.+|||..+.++++++||+.+|+.||.|.+|
T Consensus 205 ---------------e-----------------------------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C 240 (544)
T KOG0124|consen 205 ---------------E-----------------------------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKC 240 (544)
T ss_pred ---------------H-----------------------------HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeE
Confidence 0 01112589999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002741 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 456 ~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (885)
.+-+++.++.++|||||+|.+..+...|+..|| -+-|+|..|.|..+...
T Consensus 241 ~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN-----lFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 241 QLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN-----LFDLGGQYLRVGKCVTP 290 (544)
T ss_pred EeeccCCCCCccceeeEEeccccchHHHhhhcc-----hhhcccceEecccccCC
Confidence 999999888999999999999999999999999 89999999999987754
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.91 E-value=2.4e-24 Score=235.71 Aligned_cols=326 Identities=21% Similarity=0.312 Sum_probs=225.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
.++||+--|+..+++.+|.++|+.+|.|..|.++.|..++.++|.|||+|.+.+....||. |.|..+.|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 4689999999999999999999999999999999999999999999999999999999996 999999999999986532
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002741 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (885)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~ 375 (885)
.... ..++....+
T Consensus 258 eknr-------------------------------------------------------------~a~~s~a~~------ 270 (549)
T KOG0147|consen 258 EKNR-------------------------------------------------------------AANASPALQ------ 270 (549)
T ss_pred HHHH-------------------------------------------------------------HHhcccccc------
Confidence 2110 000000000
Q ss_pred CchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 002741 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
.. ....+-..|||+||.+++++++|+.+|.+||.|..|
T Consensus 271 -----~k-------------------------------------~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v 308 (549)
T KOG0147|consen 271 -----GK-------------------------------------GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENV 308 (549)
T ss_pred -----cc-------------------------------------ccccchhhhhhcccccCchHHHHhhhccCcccceee
Confidence 00 001111239999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchh-hhhhhcccccccccchhh
Q 002741 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDK-EIDKSKNETNDHRNLYLA 534 (885)
Q Consensus 456 ~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~-~~~~~~~~~~~~~~~~l~ 534 (885)
.+++|..||.++|||||+|.+.++|.+|+..|| |+.|-|+.|.|.....+-..... ......... +...+.+.
T Consensus 309 ~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ln-----gfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~-d~~gl~~~ 382 (549)
T KOG0147|consen 309 QLTKDSETGRSKGFGFITFVNKEDARKALEQLN-----GFELAGRLIKVSVVTERVDTKEAAVTQFDFDED-DRQGLSLG 382 (549)
T ss_pred eeccccccccccCcceEEEecHHHHHHHHHHhc-----cceecCceEEEEEeeeecccccccccccccchh-hccccccc
Confidence 999999999999999999999999999999999 99999999999886654322211 000011111 12222222
Q ss_pred ccC------cccCCCCCCCCCC-------hhhHHHHHHHH-----HHhhhccCCCCCCcccceEEEcCC--CcccCHHHH
Q 002741 535 KEG------LILEGTPAAEGVS-------DDDMSKRQMLH-----EKKMTKLQSPNFHVSRTRLVIYNL--PKSMTEKGL 594 (885)
Q Consensus 535 ~eg------~~~~~sp~~~~~s-------~~d~~~r~~~~-----~~~~~~~~~p~~~~s~~~L~V~NL--P~~vte~~L 594 (885)
..| ...++.+...-.+ ...+....... ....+....|.+.+++.||.|+|+ |...|+..+
T Consensus 383 ~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~ 462 (549)
T KOG0147|consen 383 SGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNW 462 (549)
T ss_pred cccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcch
Confidence 111 0001111000000 00000000000 000011113455577789999999 777777666
Q ss_pred HHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceE-EEEEc
Q 002741 595 KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPI-VEFAV 673 (885)
Q Consensus 595 ~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rli-V~~A~ 673 (885)
..-..+.|++.+. .||.|..|.+-. .+.|+.||.|.+.+.|..|+.+||| .||+ +++| ..|-.
T Consensus 463 d~eI~edV~Eec~-k~g~v~hi~vd~-----------ns~g~VYvrc~s~~~A~~a~~alhg--rWF~--gr~Ita~~~~ 526 (549)
T KOG0147|consen 463 DQEIREDVIEECG-KHGKVCHIFVDK-----------NSAGCVYVRCPSAEAAGTAVKALHG--RWFA--GRMITAKYLP 526 (549)
T ss_pred hhHHHHHHHHHHH-hcCCeeEEEEcc-----------CCCceEEEecCcHHHHHHHHHHHhh--hhhc--cceeEEEEee
Confidence 5555555555443 599997665543 3459999999999999999999999 4998 7888 77763
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=2e-23 Score=228.64 Aligned_cols=328 Identities=22% Similarity=0.285 Sum_probs=220.5
Q ss_pred cccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCc
Q 002741 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (885)
Q Consensus 116 ~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~ 195 (885)
...+..||||+--|+...+..+|.++|+.+|.|..|.++.|+ ..+.++|.|||+|.+.++...||. |.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr---------~s~rskgi~Yvef~D~~sVp~aia-LsGq 243 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDR---------NSRRSKGIAYVEFCDEQSVPLAIA-LSGQ 243 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccc---------cchhhcceeEEEEecccchhhHhh-hcCC
Confidence 455789999999999999999999999999999999999986 578899999999999999999995 8999
Q ss_pred eecCeeeeecccCC--------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEE
Q 002741 196 EIKGGTVWARQLGG--------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 261 (885)
Q Consensus 196 ~i~g~~i~v~~~~~--------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~a 261 (885)
.+.|.+|.|..... .+-..+...|||+||.+++++++|+.+|++||.|..|.++.+.++|.++|||
T Consensus 244 rllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfG 323 (549)
T KOG0147|consen 244 RLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFG 323 (549)
T ss_pred cccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcc
Confidence 99999998854211 1111223349999999999999999999999999999999999999999999
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccc
Q 002741 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEK 341 (885)
Q Consensus 262 fV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~ 341 (885)
||+|.+.++|.+|+..|||..|.|+.|+|......-....... .. .+ .|+++. .+.+.
T Consensus 324 fi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~---~~------~d--~D~~d~----~gl~~------- 381 (549)
T KOG0147|consen 324 FITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAV---TQ------FD--FDEDDR----QGLSL------- 381 (549)
T ss_pred eEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccc---cc------cc--cchhhc----ccccc-------
Confidence 9999999999999999999999999999987643321110000 00 00 000000 00000
Q ss_pred cCCCCCCCchhHHHHHHHHhhhcccCCCC-CCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCC
Q 002741 342 EDLPSNADFDEEVDIARKVLNKLTSTTGS-LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEG 420 (885)
Q Consensus 342 ~~~~~~~~f~~~~~~~~~~~~~~~~~~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~ 420 (885)
+ .-. ... .+..++...|. +|+.................- +..-....+.|... .+.
T Consensus 382 --~----~~g-~~Q----l~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~--~~~~~~~~~~p~~~----------~p~ 438 (549)
T KOG0147|consen 382 --G----SGG-RNQ----LMAKLAEGKGRSLPSTAISALLLLAKLASAAQF--NGVVRVRSVDPADA----------SPA 438 (549)
T ss_pred --c----ccc-HHH----HHHHHhccCCccccchhhhHHHhccccchHHhh--cCCcCccccCcccc----------ccc
Confidence 0 000 001 11111111110 111110000000000000000 00000001111100 011
Q ss_pred CCCCCCeEEEcCCC--CCCC--------HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccC
Q 002741 421 EDELQNTIFICNLP--FDLD--------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTT 490 (885)
Q Consensus 421 ~~~~~~~l~V~nLp--~~~t--------ee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~ 490 (885)
-..++.|+.|+|+= .+.| .++|.+-+.+||.|..|.|... +-|+.||.|.+.++|..|+.+||
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alh-- 511 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALH-- 511 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHh--
Confidence 12455688888882 2222 3788889999999999866322 34999999999999999999999
Q ss_pred CCCCeeecCeEEEEEEcc
Q 002741 491 SGLGIFLKGRQLTVLKAL 508 (885)
Q Consensus 491 ~~~g~~l~gr~l~V~~a~ 508 (885)
|.+|.|+.|.+.|-.
T Consensus 512 ---grWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 512 ---GRWFAGRMITAKYLP 526 (549)
T ss_pred ---hhhhccceeEEEEee
Confidence 999999999999853
No 35
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.90 E-value=1.6e-20 Score=195.39 Aligned_cols=442 Identities=17% Similarity=0.200 Sum_probs=279.9
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHh--CC
Q 002741 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALL--HQ 194 (885)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~l--n~ 194 (885)
+...+-.|.|.+|-..+++.+|.+.++.||+|..|.++.. +..|.|+|++.+.|+.++... +.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---------------~r~alvefedi~~akn~Vnfaa~n~ 91 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---------------KRQALVEFEDIEGAKNCVNFAADNQ 91 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---------------cceeeeeeccccchhhheehhccCc
Confidence 3446778999999999999999999999999999988433 357999999999999997643 44
Q ss_pred ceecCeeeee--------cccCCCCCCCCCcEEEE--cCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEE
Q 002741 195 KEIKGGTVWA--------RQLGGEGSKTQKWKLII--RNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVK 264 (885)
Q Consensus 195 ~~i~g~~i~v--------~~~~~~~~~~~~~~l~V--~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~ 264 (885)
..+.|..... ++.+.+ .......|.+ -|--+.+|.+-|..++...|.|.+|.|++. +.-.|.|+
T Consensus 92 i~i~gq~Al~NyStsq~i~R~g~e-s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVE 165 (494)
T KOG1456|consen 92 IYIAGQQALFNYSTSQCIERPGDE-SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVE 165 (494)
T ss_pred ccccCchhhcccchhhhhccCCCC-CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEe
Confidence 5566654432 222222 2233334444 455678999999999999999999999875 34569999
Q ss_pred ecCHHHHHHHHHHhCCcee--CCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCcccc
Q 002741 265 FTCKRDAESAIQKFNGQKF--GKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKE 342 (885)
Q Consensus 265 F~~~e~A~~Al~~lng~~i--~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~ 342 (885)
|.+.+.|++|-..|||..| +.+.|+|+||+|.......+..+...-....... ..|......+ ...+...
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~-~~~~g~~~~~-------r~~~p~~ 237 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRG-PYDPGRNHYD-------RQRQPAP 237 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCC-CCCCCCCCCc-------cccCCCc
Confidence 9999999999999999998 6789999999998765544332211110000000 0000000000 0000000
Q ss_pred CCCCCCCchhHHHHHHHHhhhcccCCCCCCC-CCCchhhccCCCCCCcchhhhhhcccccccccccC--CCCCCCccccC
Q 002741 343 DLPSNADFDEEVDIARKVLNKLTSTTGSLPS-LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSS--KSKPKSLKQTE 419 (885)
Q Consensus 343 ~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~k~~~ 419 (885)
.+.....+. |.... .+.....+... .|.... .... .....+
T Consensus 238 ~~~~pss~~-----------------G~h~~y~sg~~~~p~~~------------------~P~r~~~~~~~~-~g~a~p 281 (494)
T KOG1456|consen 238 LGYHPSSRG-----------------GGHSGYYSGDRHGPPHP------------------PPSRYRDGYRDG-RGYASP 281 (494)
T ss_pred cCCChhhcC-----------------CCCCCCcccccCCCCCC------------------CCCCCccccccC-CCCCCC
Confidence 000000000 00000 00000000000 000000 0000 011112
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec
Q 002741 420 GEDELQNTIFICNLPFD-LDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (885)
Q Consensus 420 ~~~~~~~~l~V~nLp~~-~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~ 498 (885)
....+++.+.|.+|... .+-+.|..+|..||.|..|.++..+ .|.|+|++.+..+.++|+..|| +..+-
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLn-----n~~lf 351 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLN-----NIPLF 351 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhc-----cCccc
Confidence 35667899999999866 5789999999999999999998765 6899999999999999999999 89999
Q ss_pred CeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccc
Q 002741 499 GRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRT 578 (885)
Q Consensus 499 gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~ 578 (885)
|.+|.|.++.-.--. +-+.| ...+++|....++.+...+-....+..+..++.| ++
T Consensus 352 G~kl~v~~SkQ~~v~--------------~~~pf-----lLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~P-----s~ 407 (494)
T KOG1456|consen 352 GGKLNVCVSKQNFVS--------------PVQPF-----LLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPP-----SN 407 (494)
T ss_pred cceEEEeeccccccc--------------cCCce-----ecCCCCcchhhcccccccccCChhHhhcccccCC-----cc
Confidence 999999986421100 00111 1234566555554443333223334444555555 47
Q ss_pred eEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCC
Q 002741 579 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNP 658 (885)
Q Consensus 579 ~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p 658 (885)
+|+..|.|..+||+.|..+|.+. -. .-.+|+|.... ..-.-.|.++|.+.++|..||..||..|
T Consensus 408 vLHffNaP~~vtEe~l~~i~nek-------~v-~~~svkvFp~k--------serSssGllEfe~~s~Aveal~~~NH~p 471 (494)
T KOG1456|consen 408 VLHFFNAPLGVTEEQLIGICNEK-------DV-PPTSVKVFPLK--------SERSSSGLLEFENKSDAVEALMKLNHYP 471 (494)
T ss_pred eeEEecCCCccCHHHHHHHhhhc-------CC-CcceEEeeccc--------ccccccceeeeehHHHHHHHHHHhcccc
Confidence 89999999999999999999962 11 13556666432 1223578999999999999999999986
Q ss_pred CCCCCCCceE-EEEEc
Q 002741 659 KTFGPEHRPI-VEFAV 673 (885)
Q Consensus 659 ~~~g~~~rli-V~~A~ 673 (885)
.---.+.-|. +.|+-
T Consensus 472 i~~p~gs~PfilKlcf 487 (494)
T KOG1456|consen 472 IEGPNGSFPFILKLCF 487 (494)
T ss_pred ccCCCCCCCeeeeeee
Confidence 4322223343 66653
No 36
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=5.4e-23 Score=195.34 Aligned_cols=171 Identities=30% Similarity=0.451 Sum_probs=154.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
.....+|||+||+..++++.|.++|-+.|+|.++.++++..++...|||||+|.++|+|+.|++-||+..+.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002741 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (885)
Q Consensus 293 a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p 372 (885)
+.....
T Consensus 86 as~~~~-------------------------------------------------------------------------- 91 (203)
T KOG0131|consen 86 ASAHQK-------------------------------------------------------------------------- 91 (203)
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 741100
Q ss_pred CCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCe
Q 002741 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (885)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I 452 (885)
....+.+|||+||.+.+++..|.+.|+.||.+
T Consensus 92 ------------------------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l 123 (203)
T KOG0131|consen 92 ------------------------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVL 123 (203)
T ss_pred ------------------------------------------------cccccccccccccCcchhHHHHHHHHHhcccc
Confidence 11123589999999999999999999999998
Q ss_pred eEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccCh
Q 002741 453 VSF-VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 453 ~~v-~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k 510 (885)
... .++++..||.++|||||.|.+.+.+.+|+..|| |..+++++|.|.++..+
T Consensus 124 ~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n-----gq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 124 ISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN-----GQYLCNRPITVSYAFKK 177 (203)
T ss_pred ccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc-----cchhcCCceEEEEEEec
Confidence 763 678898999999999999999999999999999 99999999999999755
No 37
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.3e-21 Score=202.43 Aligned_cols=169 Identities=14% Similarity=0.206 Sum_probs=151.7
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
..-|.||||.|.....++.|+..|..||+|.+|.+--|. -+++++|||||+|+-+|.|..|++.||+..++
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp---------~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG 181 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP---------ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 181 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeeccccc---------ccccccceEEEEEeCcHHHHHHHHHhcccccc
Confidence 356789999999999999999999999999999986553 58999999999999999999999999999999
Q ss_pred CeeeeecccCCCCCC-----------CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecC
Q 002741 199 GGTVWARQLGGEGSK-----------TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (885)
Q Consensus 199 g~~i~v~~~~~~~~~-----------~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~ 267 (885)
|+.|.|-+....... ..-.+|||..+.++.+++||+..|+-||+|..|.+.+.+..+..+||+||+|.+
T Consensus 182 GRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n 261 (544)
T KOG0124|consen 182 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 261 (544)
T ss_pred CccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecc
Confidence 999998654332211 235799999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 268 ~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
...-..|+..||-..++|..|+|-.+...
T Consensus 262 ~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 262 LQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred ccchHHHhhhcchhhcccceEecccccCC
Confidence 99999999999999999999999876533
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.89 E-value=1.4e-21 Score=206.63 Aligned_cols=242 Identities=16% Similarity=0.147 Sum_probs=196.9
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHh-cCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAG-SIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i 197 (885)
...|.+||.|||+++.+++|+++|+ +.|+|+.|.+..| ..|+++|+|.|+|.++|.+++|++.||...+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D----------~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~ 111 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD----------ESGKARGCAVVEFKDPENVQKALEKLNKYEV 111 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc----------cCCCcCCceEEEeeCHHHHHHHHHHhhhccc
Confidence 4567799999999999999999997 6789999999888 4699999999999999999999999999999
Q ss_pred cCeeeeecccCCCC------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHH
Q 002741 198 KGGTVWARQLGGEG------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271 (885)
Q Consensus 198 ~g~~i~v~~~~~~~------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A 271 (885)
.|+.|.|....... ........|++++...+-..-|...|+--|.+..-.+.+|. ++.+++..++.|...-.+
T Consensus 112 ~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~-Dr~sr~~~t~t~~~~~~~ 190 (608)
T KOG4212|consen 112 NGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDD-DRLSRRNNTNTMSNDYNN 190 (608)
T ss_pred cCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccc-cccccccCcccccccccc
Confidence 99999986544321 12344689999999999999999999888877776666664 677999999999988777
Q ss_pred HHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCch
Q 002741 272 ESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFD 351 (885)
Q Consensus 272 ~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~ 351 (885)
..++.-++.....-+++++ |.
T Consensus 191 ~~~~~lfgl~~~Flr~~h~-f~---------------------------------------------------------- 211 (608)
T KOG4212|consen 191 SSNYNLFGLSASFLRSLHI-FS---------------------------------------------------------- 211 (608)
T ss_pred chhhhcccchhhhhhhccC-CC----------------------------------------------------------
Confidence 7777644433222222222 11
Q ss_pred hHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEc
Q 002741 352 EEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFIC 431 (885)
Q Consensus 352 ~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~ 431 (885)
++....+||.
T Consensus 212 ----------------------------------------------------------------------pPl~~k~fva 221 (608)
T KOG4212|consen 212 ----------------------------------------------------------------------PPLHNKVFVA 221 (608)
T ss_pred ----------------------------------------------------------------------CCccceeeee
Confidence 1122479999
Q ss_pred CCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002741 432 NLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (885)
Q Consensus 432 nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~ 506 (885)
||.+.+....|.+.|.-.|.|..+.+-.|+. +.++|+|.++|..+-.|..||..++ +.-+..++..+..
T Consensus 222 nl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~-----~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 222 NLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLD-----RQGLFDRRMTVRL 290 (608)
T ss_pred ccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhc-----cCCCccccceeec
Confidence 9999999999999999999999999988875 5889999999999999999999998 6555666666655
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=4.5e-22 Score=189.09 Aligned_cols=169 Identities=22% Similarity=0.312 Sum_probs=152.7
Q ss_pred CCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 002741 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (885)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (885)
...|||||||+..++++-|+++|-++|+|..+.+|.++. +....|||||+|.+.++|+-|++.||...|.|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv---------~~~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV---------TQKHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh---------cccccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 456999999999999999999999999999999999874 56788999999999999999999999999999
Q ss_pred eeeeecccCCCC-CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 002741 200 GTVWARQLGGEG-SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNV-YIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (885)
Q Consensus 200 ~~i~v~~~~~~~-~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 277 (885)
++|++....... ......+|||+||.+.++|..|.+.|+.||.+... .|+++..+|.++|||||.|.+.+.+.+|+..
T Consensus 79 rpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 79 RPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 999998765322 22345799999999999999999999999997653 7888889999999999999999999999999
Q ss_pred hCCceeCCeeEEEEeecCCC
Q 002741 278 FNGQKFGKRPIAVDWAVPKN 297 (885)
Q Consensus 278 lng~~i~g~~i~V~~a~~k~ 297 (885)
|||..++.++|.|.++..+.
T Consensus 159 ~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred hccchhcCCceEEEEEEecC
Confidence 99999999999999997554
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.6e-20 Score=182.18 Aligned_cols=279 Identities=20% Similarity=0.273 Sum_probs=179.3
Q ss_pred CeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 002741 199 GGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (885)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 278 (885)
+++|.|.+...++...+.++|||+-|...-.|+|++.+|..||.|.+|.+.+-. +|.++|+|||.|.+..+|..||..|
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHh
Confidence 356777777777777788999999999999999999999999999999999865 6889999999999999999999999
Q ss_pred CCcee---CCeeEEEEeecCCCCCCCCCc--cccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchh-
Q 002741 279 NGQKF---GKRPIAVDWAVPKNIYSSGGA--AAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDE- 352 (885)
Q Consensus 279 ng~~i---~g~~i~V~~a~~k~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~- 352 (885)
+|..- ....|.|.|+...+.+..... ..+....... -......+..
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~P----------------------------l~l~~g~~~ay 132 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNP----------------------------LALPFGAYGAY 132 (371)
T ss_pred cccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCc----------------------------cccccchhHHH
Confidence 99754 346788999865443221100 0000000000 0000000000
Q ss_pred HHHHH-----------HHHhhhc-------------ccC-----CCCCCCC-------CCch---h--hcc---CCCCCC
Q 002741 353 EVDIA-----------RKVLNKL-------------TST-----TGSLPSL-------SDDS---A--LVK---GNKEQD 388 (885)
Q Consensus 353 ~~~~~-----------~~~~~~~-------------~~~-----~g~~p~~-------~~~~---~--~~~---~~~~~~ 388 (885)
..... ..++..+ +.. ..-+|.. .... + .+. +.....
T Consensus 133 ~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~ 212 (371)
T KOG0146|consen 133 AQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLP 212 (371)
T ss_pred HHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCC
Confidence 00000 0000000 000 0000000 0000 0 000 000000
Q ss_pred ---c----chhh-----------------hhhcccccc------ccc-----cc-CCCCCCCccccCCCCCCCCeEEEcC
Q 002741 389 ---S----DKTV-----------------NESAKVSDV------SKL-----NS-SKSKPKSLKQTEGEDELQNTIFICN 432 (885)
Q Consensus 389 ---~----~~~~-----------------~~~~~~~~~------~p~-----~~-~~~~~~~~k~~~~~~~~~~~l~V~n 432 (885)
. .+.. .......++ +|. .. -.+.++....+..+.+++|+|||..
T Consensus 213 ~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYH 292 (371)
T KOG0146|consen 213 PQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYH 292 (371)
T ss_pred CCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEe
Confidence 0 0000 000000000 111 11 1222222333456889999999999
Q ss_pred CCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002741 433 LPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 433 Lp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
||.+..+.||..+|-+||.|++.++..|+.|..+++||||.|+++.+|+.||.+|| |+.|+=++|.|.+..++.
T Consensus 293 LPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN-----GFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 293 LPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN-----GFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred CchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhc-----chhhhhhhhhhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999987764
No 41
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.80 E-value=4.8e-18 Score=180.01 Aligned_cols=212 Identities=19% Similarity=0.191 Sum_probs=170.8
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccccccc
Q 002741 5 KGSNEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEK 84 (885)
Q Consensus 5 k~tg~srG~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (885)
...|++||||.|+|.++|.+++|++.||...+.||.|.|+--.. +.+.
T Consensus 80 D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d-----~q~~--------------------------- 127 (608)
T KOG4212|consen 80 DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD-----EQRD--------------------------- 127 (608)
T ss_pred ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc-----hhhh---------------------------
Confidence 47899999999999999999999999999999999999954310 0000
Q ss_pred cchhhhhcCCCCCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhcc
Q 002741 85 HSSKLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHG 164 (885)
Q Consensus 85 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~ 164 (885)
......+...++|++++....-..-|...|.--|.+..-....|
T Consensus 128 ----------------------------~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D-------- 171 (608)
T KOG4212|consen 128 ----------------------------QYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRD-------- 171 (608)
T ss_pred ----------------------------hhhheeeccCcccccCcceecccccccccCCCCccccCCCCccc--------
Confidence 01234466778999999999888899999988887776666555
Q ss_pred ccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCee
Q 002741 165 LAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW 244 (885)
Q Consensus 165 ~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~ 244 (885)
.++.+++..++.|.+.-.+..++..++.....-+++.. -.++....+||.||.+.+....|.+.|.-.|.|.
T Consensus 172 --~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~ 243 (608)
T KOG4212|consen 172 --DDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ 243 (608)
T ss_pred --ccccccccCccccccccccchhhhcccchhhhhhhccC------CCCCccceeeeeccccccchHHHHHHhccceeee
Confidence 46888999999999998888888776665544444332 1344556899999999999999999999999999
Q ss_pred EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 245 NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 245 ~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.|.+-.+++ |.++|||.++|..+-+|-.||..|++.-+..++..+.+.
T Consensus 244 ~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 244 SVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLD 291 (608)
T ss_pred eeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeecc
Confidence 998888775 579999999999999999999999987777777777663
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.4e-19 Score=183.46 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=135.9
Q ss_pred EEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeee
Q 002741 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTV 202 (885)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i 202 (885)
.|||||||..+++.+|+.+|.+||+|++|.|++ .||||+.++...|+.||..||+..|+|..|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-----------------NYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-----------------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-----------------ccceEEeecccccHHHHhhcccceecceEE
Confidence 589999999999999999999999999999964 399999999999999999999999999999
Q ss_pred eecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 002741 203 WARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQK 282 (885)
Q Consensus 203 ~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~ 282 (885)
.|..+.. .....++|+|+||.+.++..+|+..|.+||+|.+|.|++ +|+||.|.-.++|..|++.|++++
T Consensus 67 nVeaSks--Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 67 NVEASKS--KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred EEEeccc--cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccc
Confidence 9976543 245678999999999999999999999999999999976 499999999999999999999999
Q ss_pred eCCeeEEEEeecCC
Q 002741 283 FGKRPIAVDWAVPK 296 (885)
Q Consensus 283 i~g~~i~V~~a~~k 296 (885)
|.|.+++|..+..+
T Consensus 137 ~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSR 150 (346)
T ss_pred cccceeeeeeeccc
Confidence 99999999998654
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=182.96 Aligned_cols=149 Identities=26% Similarity=0.416 Sum_probs=136.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
..|||+|||..+++.+|+.+|++||.|++|.|+++ ||||+.++...|+.||..|||..|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999874 9999999999999999999999999999999977543
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCC
Q 002741 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (885)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~ 376 (885)
.
T Consensus 75 s------------------------------------------------------------------------------- 75 (346)
T KOG0109|consen 75 S------------------------------------------------------------------------------- 75 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred chhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEE
Q 002741 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (885)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~ 456 (885)
...++|+|+||.+.++..||+..|.+||.|..|.
T Consensus 76 ----------------------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecd 109 (346)
T KOG0109|consen 76 ----------------------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECD 109 (346)
T ss_pred ----------------------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeee
Confidence 0136899999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002741 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 457 i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
|+ ++|+||.|...++|..|+..|+ +.+|.|++++|..+.++-
T Consensus 110 iv--------kdy~fvh~d~~eda~~air~l~-----~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 110 IV--------KDYAFVHFDRAEDAVEAIRGLD-----NTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ee--------cceeEEEEeeccchHHHHhccc-----ccccccceeeeeeecccc
Confidence 87 5699999999999999999999 999999999999987653
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.79 E-value=1.5e-17 Score=180.49 Aligned_cols=161 Identities=20% Similarity=0.315 Sum_probs=129.0
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
...--|-+.+||+++|++||+++|+.+ .|+.+.+++ .+|+..|-|||+|.+.+++++|++. +...+.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-----------~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg 74 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-----------RNGRPSGEAYVEFTSEEDVEKALKK-DRESMG 74 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-----------cCCCcCcceEEEeechHHHHHHHHh-hHHHhC
Confidence 345678899999999999999999999 567766643 3699999999999999999999985 666666
Q ss_pred Ceeeeeccc-----------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEcccCCCCCceeEEEEEec
Q 002741 199 GGTVWARQL-----------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWN-VYIPHNTDTGLSKGFAFVKFT 266 (885)
Q Consensus 199 g~~i~v~~~-----------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~g~~~g~afV~F~ 266 (885)
.+.|-|-.. ...........|-+++||+.||++||.++|+..-.|.. +.++.+ ..+++.|-|||+|+
T Consensus 75 ~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~ 153 (510)
T KOG4211|consen 75 HRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFE 153 (510)
T ss_pred CceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEec
Confidence 666655322 22222345679999999999999999999999766655 344444 35779999999999
Q ss_pred CHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 267 CKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 267 ~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
+.+.|+.|+.. |...|..+-|.|-.+.
T Consensus 154 sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 154 SQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred CHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 99999999996 8888999999986654
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=2.6e-17 Score=173.79 Aligned_cols=329 Identities=19% Similarity=0.242 Sum_probs=207.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceeCCeeEEEEe
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG--QKFGKRPIAVDW 292 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng--~~i~g~~i~V~~ 292 (885)
.+..|+++|||++++|++|..++.+||.|..+.+.. .+..||++|.+.+.|..-+..... -.+.|.+|+|.|
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk------GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK------GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeec------cchhhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 567899999999999999999999999999988876 334899999999998774443222 235899999998
Q ss_pred ecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhccc-CCCCC
Q 002741 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTS-TTGSL 371 (885)
Q Consensus 293 a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~-~~g~~ 371 (885)
+............ ....+.++..... ..+.+
T Consensus 101 sn~~~lkt~s~p~------------------------------------------------q~r~~~vy~~~s~~q~~~~ 132 (492)
T KOG1190|consen 101 SNHSELKTDSQPN------------------------------------------------QIRGQAVYQAVSSVQEIVL 132 (492)
T ss_pred hhHHHHhccCchh------------------------------------------------hhhhhhHHhhhhccccccc
Confidence 6543222111100 0000001100000 00000
Q ss_pred CCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC
Q 002741 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (885)
Q Consensus 372 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~ 451 (885)
|-..+. ...|. ......--.++|.|+-+.++-+-|..+|++||.
T Consensus 133 ~~s~~~--~~~G~----------------------------------~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 133 PLSASA--VVVGN----------------------------------EDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred cccccc--ccccc----------------------------------cCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 000000 00000 001111246889999999999999999999999
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec--CeEEEEEEccChhhhchhhhhhhcccccccc
Q 002741 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--GRQLTVLKALDKKLAHDKEIDKSKNETNDHR 529 (885)
Q Consensus 452 I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~--gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~ 529 (885)
|..|. ...+.. .-.|+|.|.+.+.|..|..+|+ |..|. -+.|.|.|+.- .....+-.....+|..
T Consensus 177 VlKIi-TF~Knn---~FQALvQy~d~~sAq~AK~aLd-----GqnIyngcCtLrId~Skl----t~LnvKynndkSRDyT 243 (492)
T KOG1190|consen 177 VLKII-TFTKNN---GFQALVQYTDAVSAQAAKLALD-----GQNIYNGCCTLRIDFSKL----TDLNVKYNNDKSRDYT 243 (492)
T ss_pred eEEEE-EEeccc---chhhhhhccchhhHHHHHHhcc-----CCcccCceeEEEeehhhc----ccceeecccccccccc
Confidence 99984 333322 2249999999999999999999 66553 36788887543 2222233344556777
Q ss_pred cchhhccCcccC-----------CCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCC-CcccCHHHHHHH
Q 002741 530 NLYLAKEGLILE-----------GTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL-PKSMTEKGLKKL 597 (885)
Q Consensus 530 ~~~l~~eg~~~~-----------~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NL-P~~vte~~L~~l 597 (885)
+.++.-. .+.+ +.|+..+ .+.-++.-.........++..|. -.+.|.|.|| +..+|.+-|..+
T Consensus 244 np~LP~g-d~~p~l~~~~~aa~~~~~~~~g-~p~aip~~~~~a~~a~~~~~~~~---~n~vllvsnln~~~VT~d~Lftl 318 (492)
T KOG1190|consen 244 NPDLPVG-DGQPSLDQLMAAAFGSVPAVHG-APLAIPSGAAGANAADGKIESPS---ANVVLLVSNLNEEAVTPDVLFTL 318 (492)
T ss_pred CCCCCCC-ccccccchhhhccccccccccC-CcccCCccchhhcccccccccCC---CceEEEEecCchhccchhHHHHH
Confidence 7766643 1110 0011000 00000000000001112222232 1467899999 778999999999
Q ss_pred HHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEcc
Q 002741 598 CIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVD 674 (885)
Q Consensus 598 F~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e 674 (885)
|. .||.|..|+|+++. +--|.|.|.+...|.-|+.+|+|. .+|| ++|-|.++..
T Consensus 319 Fg---------vYGdVqRVkil~nk-----------kd~ALIQmsd~~qAqLA~~hL~g~-~l~g--k~lrvt~SKH 372 (492)
T KOG1190|consen 319 FG---------VYGDVQRVKILYNK-----------KDNALIQMSDGQQAQLAMEHLEGH-KLYG--KKLRVTLSKH 372 (492)
T ss_pred Hh---------hhcceEEEEeeecC-----------CcceeeeecchhHHHHHHHHhhcc-eecC--ceEEEeeccC
Confidence 99 69999999999874 346999999999999999999998 8998 6777999854
No 46
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=3.5e-18 Score=170.78 Aligned_cols=226 Identities=21% Similarity=0.295 Sum_probs=149.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC--eE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG--RQ 501 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g--r~ 501 (885)
..+.|||+-|...-.|+|++.+|..||.|.+|.+.+.. .|.++|||||.|.+.-+|..||..||+. ..+.| ..
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgS----qTmpGASSS 92 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGS----QTMPGASSS 92 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhccc----ccCCCCccc
Confidence 45799999999999999999999999999999877765 7889999999999999999999999932 34444 67
Q ss_pred EEEEEccChhhhchhhhhhhcccccccc----------------------------cchhhc-----------------c
Q 002741 502 LTVLKALDKKLAHDKEIDKSKNETNDHR----------------------------NLYLAK-----------------E 536 (885)
Q Consensus 502 l~V~~a~~k~~~~~~~~~~~~~~~~~~~----------------------------~~~l~~-----------------e 536 (885)
|.|.||...+++....+.......---+ .-||.. .
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 9999998754432221111100000000 001100 0
Q ss_pred Ccc--------------------cCCCCCCCC---C----------ChhhHH-------------------H--------
Q 002741 537 GLI--------------------LEGTPAAEG---V----------SDDDMS-------------------K-------- 556 (885)
Q Consensus 537 g~~--------------------~~~sp~~~~---~----------s~~d~~-------------------~-------- 556 (885)
|.+ .++.+++.+ + ...+.. .
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 000 001111100 0 000000 0
Q ss_pred HHHH----HHHhhhccCC-C-------CCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccC
Q 002741 557 RQML----HEKKMTKLQS-P-------NFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKK 624 (885)
Q Consensus 557 r~~~----~~~~~~~~~~-p-------~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~ 624 (885)
.... ...-....+. | -.....|+|||..||-++.+.||..+|- +||.|.+.++..|..|
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~---------PFGhivSaKVFvDRAT 323 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL---------PFGHIVSAKVFVDRAT 323 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc---------cccceeeeeeeehhcc
Confidence 0000 0000000000 0 1223579999999999999999999999 7999999999999877
Q ss_pred CccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEE
Q 002741 625 GKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFA 672 (885)
Q Consensus 625 ~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A 672 (885)
+ .|++||||.|+++.+|..||.+|||+. .|. +||.|++-
T Consensus 324 N------QSKCFGFVSfDNp~SaQaAIqAMNGFQ--IGM-KRLKVQLK 362 (371)
T KOG0146|consen 324 N------QSKCFGFVSFDNPASAQAAIQAMNGFQ--IGM-KRLKVQLK 362 (371)
T ss_pred c------cccceeeEecCCchhHHHHHHHhcchh--hhh-hhhhhhhc
Confidence 6 899999999999999999999999983 353 67776643
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=6.5e-17 Score=175.54 Aligned_cols=301 Identities=20% Similarity=0.252 Sum_probs=188.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
....|.+++||+++|+++|.++|+.+ .|.++.+++ .+|+..|-|||+|.+.+++++|+++ +...+..+-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 34578899999999999999999998 477766665 4799999999999999999999994 8888999999997664
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002741 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (885)
Q Consensus 295 ~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~ 374 (885)
+...- + + +...|.
T Consensus 85 ~~e~d--------------------------------------------------~---------~----~~~~g~---- 97 (510)
T KOG4211|consen 85 GAEAD--------------------------------------------------W---------V----MRPGGP---- 97 (510)
T ss_pred Ccccc--------------------------------------------------c---------c----ccCCCC----
Confidence 33210 0 0 000000
Q ss_pred CCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE
Q 002741 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (885)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~ 454 (885)
........|.+++||+.||++||.+||+..-.|..
T Consensus 98 ---------------------------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~ 132 (510)
T KOG4211|consen 98 ---------------------------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPD 132 (510)
T ss_pred ---------------------------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCccccc
Confidence 00012248999999999999999999998765555
Q ss_pred -EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhh-hcc--cc----c
Q 002741 455 -FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDK-SKN--ET----N 526 (885)
Q Consensus 455 -v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~-~~~--~~----~ 526 (885)
|.++.+ ..+++.|-|||+|.+.+.|++|+.... ..|+.|.|.|..+.-........... ... -. .
T Consensus 133 gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~rhr------e~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~ 205 (510)
T KOG4211|consen 133 GILLPMD-QRGRPTGEAFVQFESQESAEIALGRHR------ENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPG 205 (510)
T ss_pred ceeeecc-CCCCcccceEEEecCHHHHHHHHHHHH------HhhccceEEeehhHHHHHHhhccccccccCCCCcccccc
Confidence 334444 467799999999999999999997765 78889999998875432211110000 000 00 0
Q ss_pred ccccc--hhhccC---------cccCC------CCC---CCCCChhhHHHHHHHHHH-hhhccCCC----CCCcccceEE
Q 002741 527 DHRNL--YLAKEG---------LILEG------TPA---AEGVSDDDMSKRQMLHEK-KMTKLQSP----NFHVSRTRLV 581 (885)
Q Consensus 527 ~~~~~--~l~~eg---------~~~~~------sp~---~~~~s~~d~~~r~~~~~~-~~~~~~~p----~~~~s~~~L~ 581 (885)
..+.. +....+ ....+ -+. ..........+....... --.....+ +.......++
T Consensus 206 a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~ 285 (510)
T KOG4211|consen 206 APRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVH 285 (510)
T ss_pred CCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceee
Confidence 00000 000000 00000 000 000000000000000000 00001111 1111225799
Q ss_pred EcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 002741 582 IYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 655 (885)
Q Consensus 582 V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~ln 655 (885)
.+.||+..++.++..+|+. .....|.|-..+ .++..|-|+|+|.|+++|..||..=.
T Consensus 286 MRGlpy~a~~~di~nfFsp----------l~p~~v~i~ig~-------dGr~TGEAdveF~t~edav~Amskd~ 342 (510)
T KOG4211|consen 286 MRGLPYDATENDIANFFSP----------LNPYRVHIEIGP-------DGRATGEADVEFATGEDAVGAMGKDG 342 (510)
T ss_pred ecCCCccCCCcchhhhcCC----------CCceeEEEEeCC-------CCccCCcceeecccchhhHhhhccCC
Confidence 9999999999999999993 333356666543 35889999999999999999985433
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.69 E-value=7.2e-17 Score=172.73 Aligned_cols=175 Identities=25% Similarity=0.458 Sum_probs=152.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
..+.|||++|++.++++.|++.|.+||.|..|.+++++.+++++||+||.|++++...++|.. .-..|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 567999999999999999999999999999999999999999999999999999999999873 6677899999998887
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCC
Q 002741 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (885)
Q Consensus 295 ~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~ 374 (885)
|........
T Consensus 84 ~r~~~~~~~----------------------------------------------------------------------- 92 (311)
T KOG4205|consen 84 SREDQTKVG----------------------------------------------------------------------- 92 (311)
T ss_pred Ccccccccc-----------------------------------------------------------------------
Confidence 654211000
Q ss_pred CCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE
Q 002741 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (885)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~ 454 (885)
.......|||++||.++++++|+++|.+||.|..
T Consensus 93 ----------------------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~ 126 (311)
T KOG4205|consen 93 ----------------------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVAD 126 (311)
T ss_pred ----------------------------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEe
Confidence 0002358999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhh
Q 002741 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (885)
Q Consensus 455 v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~ 513 (885)
+.++.|..+.+.+||+||.|.+.++..+++. .. -+.|.|+.+.|..|.++...
T Consensus 127 ~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~-----f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 127 VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QK-----FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eEEeecccccccccceeeEeccccccceecc-cc-----eeeecCceeeEeeccchhhc
Confidence 9999999999999999999999999998874 34 68999999999999998543
No 49
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.4e-15 Score=170.04 Aligned_cols=305 Identities=21% Similarity=0.347 Sum_probs=208.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC-----------CC-eeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPV-----------GL-VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ 281 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~-----------G~-I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~ 281 (885)
.....++|+++|..++++.+..+|..- |+ +..|.+-. .+.|||++|.+.++|..|+. +++.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~~-~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAMA-LDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhhc-ccch
Confidence 456799999999999999999998763 32 55566543 56799999999999999988 7999
Q ss_pred eeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHh
Q 002741 282 KFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVL 361 (885)
Q Consensus 282 ~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~ 361 (885)
.+.|.++.+..-.....- ... ...
T Consensus 246 ~f~g~~~~~~r~~d~~~~--p~~-------------------------------------------~~~----------- 269 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPV--PGI-------------------------------------------TLS----------- 269 (500)
T ss_pred hhCCCCceecccccccCC--ccc-------------------------------------------hhh-----------
Confidence 999999888532111000 000 000
Q ss_pred hhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHH
Q 002741 362 NKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEE 441 (885)
Q Consensus 362 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~ 441 (885)
+...+.++.... ..........+||++||..+++.+
T Consensus 270 ---~~~~~~~~~~~~-----------------------------------------~t~~~~~~~ki~v~~lp~~l~~~q 305 (500)
T KOG0120|consen 270 ---PSQLGKVGLLPA-----------------------------------------STDVPDSPNKIFVGGLPLYLTEDQ 305 (500)
T ss_pred ---hccccccCCccc-----------------------------------------ccCcccccchhhhccCcCccCHHH
Confidence 000000000000 000112236899999999999999
Q ss_pred HHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhh
Q 002741 442 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKS 521 (885)
Q Consensus 442 L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~ 521 (885)
+.++...||.+....++.+..+|.++||||.+|.+......|+..|| |..+++..|.|..|..........
T Consensus 306 ~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn-----Gm~lgd~~lvvq~A~~g~~~~~~~---- 376 (500)
T KOG0120|consen 306 VKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN-----GMQLGDKKLVVQRAIVGASNANVN---- 376 (500)
T ss_pred HHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccc-----hhhhcCceeEeehhhccchhcccc----
Confidence 99999999999999999999999999999999999999999999999 999999999999987542221110
Q ss_pred cccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCC--Cccc-CHHHHHHHH
Q 002741 522 KNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNL--PKSM-TEKGLKKLC 598 (885)
Q Consensus 522 ~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NL--P~~v-te~~L~~lF 598 (885)
.+++. + ...+.+ ....+...++...|++.|+ |.++ .+++..++.
T Consensus 377 -------~~~~~---~-~~~~i~----------------------~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIl 423 (500)
T KOG0120|consen 377 -------FNISQ---S-QVPGIP----------------------LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEIL 423 (500)
T ss_pred -------CCccc---c-ccccch----------------------hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHH
Confidence 00000 0 000110 0111222334567888888 4443 455566666
Q ss_pred HHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEccc
Q 002741 599 IDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDN 675 (885)
Q Consensus 599 ~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~ 675 (885)
+..-.+|+. ||.|.+|.|.++.... ......|-.||+|.+.++|+.|+.+|+|. .|. ++.++..|..++
T Consensus 424 Edvr~ec~k--~g~v~~v~ipr~~~~~---~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~-nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAK--FGAVRSVEIPRPYPDE---NPVPGTGKVFVEFADTEDSQRAMEELTGR--KFA-NRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcc--cCceeEEecCCCCCCC---CcCCCcccEEEEecChHHHHHHHHHccCc--eeC-CcEEEEEecCHH
Confidence 654444444 9999999999873222 23356789999999999999999999995 677 244447777543
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.65 E-value=3.7e-16 Score=167.32 Aligned_cols=170 Identities=19% Similarity=0.303 Sum_probs=148.4
Q ss_pred CCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecC
Q 002741 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (885)
Q Consensus 120 ~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g 199 (885)
..+.||||+|+++++++.|++.|+.||+|..|.++++. .+++++||+||.|.+++....++.. ....|.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~---------~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dg 74 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDP---------STGRSRGFGFVTFATPEGVDAVLNA-RTHKLDG 74 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccC---------CCCCcccccceecCCCcchheeecc-cccccCC
Confidence 57899999999999999999999999999999999886 4699999999999999998888764 5566788
Q ss_pred eeeeecccCCCCC------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHH
Q 002741 200 GTVWARQLGGEGS------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAES 273 (885)
Q Consensus 200 ~~i~v~~~~~~~~------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~ 273 (885)
+.|-+...-.... ......|||++||.+++++++++.|.+||.|..+.++.|..+...+||+||.|.+++.+.+
T Consensus 75 r~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 75 RSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred ccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 8776544332211 1234599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCceeCCeeEEEEeecCCCCCC
Q 002741 274 AIQKFNGQKFGKRPIAVDWAVPKNIYS 300 (885)
Q Consensus 274 Al~~lng~~i~g~~i~V~~a~~k~~~~ 300 (885)
++. ...+.|.++.+.|..|.|+....
T Consensus 155 v~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 155 VTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecc-cceeeecCceeeEeeccchhhcc
Confidence 998 58899999999999999987554
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.65 E-value=1.7e-14 Score=150.81 Aligned_cols=304 Identities=18% Similarity=0.175 Sum_probs=199.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh--CCceeCCeeEEE
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF--NGQKFGKRPIAV 290 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l--ng~~i~g~~i~V 290 (885)
...+-.|.|++|-..++|.+|.+.++.||.|..|.++. .+..|.|+|++.+.|+.|+..- +...+.|..--+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 44567899999999999999999999999999888776 4567999999999999988631 222234444444
Q ss_pred EeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCC
Q 002741 291 DWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGS 370 (885)
Q Consensus 291 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~ 370 (885)
.|+....... +
T Consensus 102 NyStsq~i~R----------------------------------------------------------~----------- 112 (494)
T KOG1456|consen 102 NYSTSQCIER----------------------------------------------------------P----------- 112 (494)
T ss_pred ccchhhhhcc----------------------------------------------------------C-----------
Confidence 4432211100 0
Q ss_pred CCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEE--EcCCCCCCCHHHHHHHHhc
Q 002741 371 LPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIF--ICNLPFDLDNEEVKQRFSA 448 (885)
Q Consensus 371 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~--V~nLp~~~tee~L~~~F~~ 448 (885)
+ .....++..|. |-|--+.+|.+-|..++.+
T Consensus 113 ------------g-----------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp 145 (494)
T KOG1456|consen 113 ------------G-----------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNP 145 (494)
T ss_pred ------------C-----------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCC
Confidence 0 00111123333 4455677899999999999
Q ss_pred cCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhccccccc
Q 002741 449 FGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDH 528 (885)
Q Consensus 449 fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~ 528 (885)
.|.|..|.|+.. .--.|+|+|++.+.|++|..+||++ .+.-+-++|.|.||+|..- ...+.....+|.
T Consensus 146 ~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~alNGA---DIYsGCCTLKIeyAkP~rl----nV~knd~DtwDy 213 (494)
T KOG1456|consen 146 QGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAALNGA---DIYSGCCTLKIEYAKPTRL----NVQKNDKDTWDY 213 (494)
T ss_pred CCceEEEEEEec-----cceeeEEeechhHHHHHHHhhcccc---cccccceeEEEEecCccee----eeeecCCccccc
Confidence 999999976543 2457999999999999999999932 2333568999999987532 222222222333
Q ss_pred ccchhhcc-----CcccC-CCCCCCCCChhh-------------------HHHHHHHHHHhhhccCCCCCCcccceEEEc
Q 002741 529 RNLYLAKE-----GLILE-GTPAAEGVSDDD-------------------MSKRQMLHEKKMTKLQSPNFHVSRTRLVIY 583 (885)
Q Consensus 529 ~~~~l~~e-----g~~~~-~sp~~~~~s~~d-------------------~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~ 583 (885)
..-++... +.... .-|+..+..++. .+.|......-...+..|....+.+.++|.
T Consensus 214 Tlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVy 293 (494)
T KOG1456|consen 214 TLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVY 293 (494)
T ss_pred cCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEE
Confidence 22222110 00000 000000000000 000000000000123445666788999999
Q ss_pred CCC-cccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCC
Q 002741 584 NLP-KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFG 662 (885)
Q Consensus 584 NLP-~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g 662 (885)
+|. ..++.+.|..+|+ .||.|..|++|+-. .|.|.|++.+..+.++|+..|||. .+||
T Consensus 294 GLdh~k~N~drlFNl~C---------lYGNV~rvkFmkTk-----------~gtamVemgd~~aver~v~hLnn~-~lfG 352 (494)
T KOG1456|consen 294 GLDHGKMNCDRLFNLFC---------LYGNVERVKFMKTK-----------PGTAMVEMGDAYAVERAVTHLNNI-PLFG 352 (494)
T ss_pred eccccccchhhhhhhhh---------hcCceeeEEEeecc-----------cceeEEEcCcHHHHHHHHHHhccC-cccc
Confidence 995 4678899999999 69999999999753 689999999999999999999998 5688
Q ss_pred CCCceEEEEEc
Q 002741 663 PEHRPIVEFAV 673 (885)
Q Consensus 663 ~~~rliV~~A~ 673 (885)
.+|-|.++.
T Consensus 353 --~kl~v~~Sk 361 (494)
T KOG1456|consen 353 --GKLNVCVSK 361 (494)
T ss_pred --ceEEEeecc
Confidence 888888884
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.61 E-value=2.7e-14 Score=142.18 Aligned_cols=206 Identities=21% Similarity=0.284 Sum_probs=144.3
Q ss_pred cEEEEcCCCCCCCHHHHHH----hhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 217 WKLIIRNIPFKAKVNEIKD----MFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~----~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
.+|||.||+..+..++|+. +|++||.|..|.... +.+.+|.|||.|.+.+.|..|+..|+|..|.|++++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999988 999999999888875 566999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCC
Q 002741 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (885)
Q Consensus 293 a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p 372 (885)
|..+..........-..+....... ....... ....+..+..
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~----------~~~~~~~--------~~~~ng~~~~-------------------- 128 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGE----------ILARIKQ--------PLDTNGHFYN-------------------- 128 (221)
T ss_pred ccCccchhhccCceeccccCccccc----------cccccCC--------cccccccccc--------------------
Confidence 9765433222110000000000000 0000000 0000000000
Q ss_pred CCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCe
Q 002741 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (885)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I 452 (885)
.....+.|+ .. ....++...||+.|||..++.+.|..+|.+|...
T Consensus 129 ------------------------~~~~~~p~p----------~~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~ 173 (221)
T KOG4206|consen 129 ------------------------MNRMNLPPP----------FL-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGF 173 (221)
T ss_pred ------------------------cccccCCCC----------cc-ccCCCCceEEEEecCCcchhHHHHHHHHhhCccc
Confidence 000000000 01 2235567899999999999999999999999999
Q ss_pred eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec-CeEEEEEEcc
Q 002741 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK-GRQLTVLKAL 508 (885)
Q Consensus 453 ~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~-gr~l~V~~a~ 508 (885)
..++++... .+.|||+|.+...|..|...+. +..+- ...+.|.++.
T Consensus 174 keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq-----~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 174 KEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQ-----GFKITKKNTMQITFAK 220 (221)
T ss_pred ceeEeccCC-----CceeEEecchhhhhHHHhhhhc-----cceeccCceEEecccC
Confidence 999887553 7899999999999999999999 77775 8888888764
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.9e-15 Score=165.78 Aligned_cols=274 Identities=20% Similarity=0.269 Sum_probs=201.1
Q ss_pred cccCCCcEEEEcCCCccchHHHHHHHHhcC-----------C-CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHH
Q 002741 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSI-----------G-TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 183 (885)
Q Consensus 116 ~~~~~~rtv~V~nLp~~~te~~L~~~F~~~-----------G-~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e 183 (885)
.....++.++|+++|..++++.+..+|..- | .+..|.+ .....|||++|.+.+
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~---------------n~~~nfa~ie~~s~~ 234 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL---------------NLEKNFAFIEFRSIS 234 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee---------------cccccceeEEecCCC
Confidence 445678899999999999999999988744 3 3555655 344679999999999
Q ss_pred HHHHHHHHhCCceecCeeeeecccCC-----------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCC
Q 002741 184 SACASVALLHQKEIKGGTVWARQLGG-----------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPV 240 (885)
Q Consensus 184 ~A~~Ai~~ln~~~i~g~~i~v~~~~~-----------------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~ 240 (885)
+|..|+. +++..+.|.++.+..... .........+||++||..+++.++.++...|
T Consensus 235 ~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f 313 (500)
T KOG0120|consen 235 EATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF 313 (500)
T ss_pred chhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc
Confidence 9999976 577777777766533210 0112345789999999999999999999999
Q ss_pred CCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCC
Q 002741 241 GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGS 320 (885)
Q Consensus 241 G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~ 320 (885)
|.+....++.+..+|.++||||.+|.++.....|+..|||..+++..|.|..+.+.......... +.+
T Consensus 314 g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~---------~~~--- 381 (500)
T KOG0120|consen 314 GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN---------ISQ--- 381 (500)
T ss_pred ccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC---------ccc---
Confidence 99999999999999999999999999999999999999999999999999988654322111000 000
Q ss_pred CCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccc
Q 002741 321 DDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVS 400 (885)
Q Consensus 321 d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (885)
.. ...+....
T Consensus 382 ---------------------------~~--------~~~i~~~~----------------------------------- 391 (500)
T KOG0120|consen 382 ---------------------------SQ--------VPGIPLLM----------------------------------- 391 (500)
T ss_pred ---------------------------cc--------cccchhhh-----------------------------------
Confidence 00 00000000
Q ss_pred cccccccCCCCCCCccccCCCCCCCCeEEEcCC--CCCC-C-------HHHHHHHHhccCCeeEEEEeecC---CCCCcc
Q 002741 401 DVSKLNSSKSKPKSLKQTEGEDELQNTIFICNL--PFDL-D-------NEEVKQRFSAFGEVVSFVPVLHQ---VTKRPK 467 (885)
Q Consensus 401 ~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nL--p~~~-t-------ee~L~~~F~~fG~I~~v~i~~~~---~~~~~~ 467 (885)
.+....+...|.+.|+ |.+. . -|+|+.-|+.||.|.+|.+.++. ......
T Consensus 392 -----------------~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~ 454 (500)
T KOG0120|consen 392 -----------------TQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGT 454 (500)
T ss_pred -----------------cccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCc
Confidence 0002223345555555 1111 1 24566778899999999887662 223467
Q ss_pred eEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccC
Q 002741 468 GTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (885)
Q Consensus 468 g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (885)
|..||+|.+.+++++|+++|+ |..|.||.|...|...
T Consensus 455 GkVFVefas~ed~qrA~~~L~-----GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 455 GKVFVEFADTEDSQRAMEELT-----GRKFANRTVVASYYDE 491 (500)
T ss_pred ccEEEEecChHHHHHHHHHcc-----CceeCCcEEEEEecCH
Confidence 889999999999999999999 9999999999999753
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.60 E-value=3e-14 Score=141.78 Aligned_cols=202 Identities=25% Similarity=0.364 Sum_probs=140.1
Q ss_pred CCeEEEcCCCCCCCHHHHHH----HHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 425 QNTIFICNLPFDLDNEEVKQ----RFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~----~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
..||||.||+..+..++|+. +|++||.|..|... .+.+.+|.|||.|.+.+.|..|+.+|+ |+.+.|+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~-----gfpFygK 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQ-----GFPFYGK 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhc-----CCcccCc
Confidence 34999999999999999988 99999999998654 356789999999999999999999999 9999999
Q ss_pred EEEEEEccChhhhchhhhhhhcccccccc-cc-hhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCC---CCCc
Q 002741 501 QLTVLKALDKKLAHDKEIDKSKNETNDHR-NL-YLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSP---NFHV 575 (885)
Q Consensus 501 ~l~V~~a~~k~~~~~~~~~~~~~~~~~~~-~~-~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p---~~~~ 575 (885)
++.|.||..+...-.+... .-...+.+ +. -+...+ ..+...+.... .....++.| ....
T Consensus 81 ~mriqyA~s~sdii~~~~~--~~v~~~~k~~~~~~~~~~----~~~~~ng~~~~----------~~~~~~p~p~~~~~~p 144 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPG--TFVEKEKKINGEILARIK----QPLDTNGHFYN----------MNRMNLPPPFLAQMAP 144 (221)
T ss_pred hhheecccCccchhhccCc--eeccccCccccccccccC----Ccccccccccc----------cccccCCCCccccCCC
Confidence 9999999875432211000 00000000 00 000000 00000000000 000001111 1133
Q ss_pred ccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 002741 576 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 655 (885)
Q Consensus 576 s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~ln 655 (885)
+...|++.|||.+++.+.|..+|+ +|+....|+++.. -.|.|||+|.+...|..|+.+|+
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~---------qf~g~keir~i~~-----------~~~iAfve~~~d~~a~~a~~~lq 204 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFE---------QFPGFKEIRLIPP-----------RSGIAFVEFLSDRQASAAQQALQ 204 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHh---------hCcccceeEeccC-----------CCceeEEecchhhhhHHHhhhhc
Confidence 456899999999999999999999 6999999998853 36899999999999999999999
Q ss_pred CCCCCCCCCCceEEEEE
Q 002741 656 NNPKTFGPEHRPIVEFA 672 (885)
Q Consensus 656 g~p~~~g~~~rliV~~A 672 (885)
+..+. +.+.+.|.||
T Consensus 205 ~~~it--~~~~m~i~~a 219 (221)
T KOG4206|consen 205 GFKIT--KKNTMQITFA 219 (221)
T ss_pred cceec--cCceEEeccc
Confidence 97332 2366667777
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.7e-14 Score=137.44 Aligned_cols=154 Identities=17% Similarity=0.248 Sum_probs=130.5
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
+..++|||||||.++-+.+|.++|.+||.|..|.+.. .....+||||+|+++.+|+.||.--++..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~------------r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN------------RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc------------CCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 4678999999999999999999999999999998822 1234689999999999999999999999999
Q ss_pred CeeeeecccCC--------------------------CCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccC
Q 002741 199 GGTVWARQLGG--------------------------EGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (885)
Q Consensus 199 g~~i~v~~~~~--------------------------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~ 252 (885)
|..|+|..... ..+.....+|.|.+||+..+.++|+++....|.|....+.+|
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 99999854321 112345679999999999999999999999999998888776
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceeC--CeeEEEE
Q 002741 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG--KRPIAVD 291 (885)
Q Consensus 253 ~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~--g~~i~V~ 291 (885)
|++.|+|...|+-+.|+..|+...+. |-...+.
T Consensus 151 ------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 151 ------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred ------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 48999999999999999999888773 4444443
No 56
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.2e-13 Score=131.79 Aligned_cols=169 Identities=22% Similarity=0.288 Sum_probs=129.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
..++|||+|||.++-+.+|.++|.+||.|..|.+-.. ...-.||||+|+++-+|+.||..-+ |.-++|..|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRd-----GYdydg~rLR 76 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRD-----GYDYDGCRLR 76 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhccc-----ccccCcceEE
Confidence 3589999999999999999999999999999976433 2356899999999999999999999 9999999999
Q ss_pred EEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEc
Q 002741 504 VLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIY 583 (885)
Q Consensus 504 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~ 583 (885)
|.++..-... .+.+..|...... +... ..-..|....|..++.|.
T Consensus 77 VEfprggr~s------------~~~~G~y~gggrg---Ggg~--------------------gg~rgppsrrSe~RVvVs 121 (241)
T KOG0105|consen 77 VEFPRGGRSS------------SDRRGSYSGGGRG---GGGG--------------------GGRRGPPSRRSEYRVVVS 121 (241)
T ss_pred EEeccCCCcc------------cccccccCCCCCC---CCCC--------------------CcccCCcccccceeEEEe
Confidence 9997643211 1111111111000 0000 001112223355689999
Q ss_pred CCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002741 584 NLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 657 (885)
Q Consensus 584 NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~ 657 (885)
+||.+.+.++|++++.+ -|.|....+.+| |+|.|+|...++..-|++.|...
T Consensus 122 GLp~SgSWQDLKDHmRe---------aGdvCfadv~rD-------------g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 122 GLPPSGSWQDLKDHMRE---------AGDVCFADVQRD-------------GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred cCCCCCchHHHHHHHHh---------hCCeeeeeeecc-------------cceeeeeeehhhHHHHHHhhccc
Confidence 99999999999999997 588888877765 69999999999999999999985
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.54 E-value=4.5e-14 Score=136.83 Aligned_cols=84 Identities=33% Similarity=0.555 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l 502 (885)
...++|||+|||+++++++|+++|.+||.|.+|.|+.+..++.++|||||+|.+.++|..|++.|+ +..|+|+.|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln-----g~~i~Gr~l 106 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD-----GKELNGRHI 106 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC-----CCEECCEEE
Confidence 345799999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEccChh
Q 002741 503 TVLKALDKK 511 (885)
Q Consensus 503 ~V~~a~~k~ 511 (885)
.|.|+.++.
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999997654
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.52 E-value=6e-14 Score=135.96 Aligned_cols=85 Identities=27% Similarity=0.439 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|+.||..||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 002741 293 AVPKN 297 (885)
Q Consensus 293 a~~k~ 297 (885)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97654
No 59
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=5.3e-13 Score=140.13 Aligned_cols=285 Identities=19% Similarity=0.276 Sum_probs=181.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.....|..++||+..++.+|..+|...-.......+.....|...|.|.|.|.+.+.-+.|++. +...+.++.|.|--+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 3445677889999999999999998653322222222233567789999999999999999995 778889999998766
Q ss_pred cCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002741 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (885)
Q Consensus 294 ~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~ 373 (885)
.+..-..-.. |+
T Consensus 137 ~ge~f~~iag-----------------------------------------------------------------g~--- 148 (508)
T KOG1365|consen 137 TGEEFLKIAG-----------------------------------------------------------------GT--- 148 (508)
T ss_pred CchhheEecC-----------------------------------------------------------------Cc---
Confidence 4332110000 00
Q ss_pred CCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhcc----
Q 002741 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAF---- 449 (885)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~f---- 449 (885)
+ . ...+.. .....-.|.+++||+++++.++.+||.+-
T Consensus 149 --s--~---------------------e~~~fl--------------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~ 189 (508)
T KOG1365|consen 149 --S--N---------------------EAAPFL--------------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVT 189 (508)
T ss_pred --c--c---------------------cCCCCC--------------CcccceEEEecCCCCCcchHHHHHhcCCCCccc
Confidence 0 0 000000 00012368889999999999999999632
Q ss_pred CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccccccc
Q 002741 450 GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHR 529 (885)
Q Consensus 450 G~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~ 529 (885)
|..+.|.++.. .+|+..|-|||.|..+++|+.|+..-. ..|+-|.|.+..+... +..+.-+...+
T Consensus 190 ~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khr------q~iGqRYIElFRSTaa------Evqqvlnr~~s-- 254 (508)
T KOG1365|consen 190 GGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHR------QNIGQRYIELFRSTAA------EVQQVLNREVS-- 254 (508)
T ss_pred CCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHH------HHHhHHHHHHHHHhHH------HHHHHHHhhcc--
Confidence 24455544443 478999999999999999999997754 4566666666543221 11111110000
Q ss_pred cchhhccCcccC-CCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhcc
Q 002741 530 NLYLAKEGLILE-GTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASK 608 (885)
Q Consensus 530 ~~~l~~eg~~~~-~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~ 608 (885)
++.+.. ++|...+. + . .+ .|. ..+..+|.+++||+++|.++|.+||.++....-
T Consensus 255 ------~pLi~~~~sp~~p~~-p----~----------~~-~p~-~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~-- 309 (508)
T KOG1365|consen 255 ------EPLIPGLTSPLLPGG-P----A----------RL-VPP-TRSKDCVRLRGLPYEATVEDILDFLGDFATDIR-- 309 (508)
T ss_pred ------ccccCCCCCCCCCCC-c----c----------cc-CCC-CCCCCeeEecCCChhhhHHHHHHHHHHHhhhcc--
Confidence 011110 11111110 0 0 00 011 123568999999999999999999998654321
Q ss_pred CCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002741 609 QKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 657 (885)
Q Consensus 609 ~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~ 657 (885)
...|+++.+ .+|++.|-|||+|.+.+.|..|....+++
T Consensus 310 ----f~gVHmv~N-------~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 310 ----FQGVHMVLN-------GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred ----cceeEEEEc-------CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 112566654 57799999999999999999999999885
No 60
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=1e-12 Score=138.12 Aligned_cols=275 Identities=21% Similarity=0.303 Sum_probs=187.0
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCC----CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCce
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIG----TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKE 196 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G----~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~ 196 (885)
..-|-..+||+..+..+|..+|...- -+.-|.. ..|+..|.|.|.|.+.+.-..|++. +...
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-------------~qgrRnge~lvrf~d~e~RdlalkR-hkhh 125 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-------------AQGRRNGEALVRFVDPEGRDLALKR-HKHH 125 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh-------------hhhccccceEEEecCchhhhhhhHh-hhhh
Confidence 34456789999999999999998442 1222221 3577889999999999999999886 6666
Q ss_pred ecCeeeeecccCCC----------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCC----CCeeEEEEcccCCCCC
Q 002741 197 IKGGTVWARQLGGE----------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGL 256 (885)
Q Consensus 197 i~g~~i~v~~~~~~----------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~~g~ 256 (885)
+.++.|-+....++ .+....-.|.+++||+++++.++.++|..- |....|.++.. -+|+
T Consensus 126 ~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgr 204 (508)
T KOG1365|consen 126 MGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGR 204 (508)
T ss_pred ccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCC
Confidence 77777765433211 112334577889999999999999999742 23445555553 3688
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 002741 257 SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDS 336 (885)
Q Consensus 257 ~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 336 (885)
..|-|||.|..+++|..|+.+ |...|+.|.|.+-.+.
T Consensus 205 pTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRST------------------------------------------ 241 (508)
T KOG1365|consen 205 PTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRST------------------------------------------ 241 (508)
T ss_pred cccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHh------------------------------------------
Confidence 999999999999999999996 6666776666654332
Q ss_pred CCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCcc
Q 002741 337 NSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLK 416 (885)
Q Consensus 337 ~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k 416 (885)
.....+++++..+. +-++..++ ...|-......
T Consensus 242 -----------------aaEvqqvlnr~~s~-pLi~~~~s------------------------p~~p~~p~~~~----- 274 (508)
T KOG1365|consen 242 -----------------AAEVQQVLNREVSE-PLIPGLTS------------------------PLLPGGPARLV----- 274 (508)
T ss_pred -----------------HHHHHHHHHhhccc-cccCCCCC------------------------CCCCCCccccC-----
Confidence 11222333332210 00010000 00000000000
Q ss_pred ccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC-eeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCC
Q 002741 417 QTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE-VVS--FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (885)
Q Consensus 417 ~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~-I~~--v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~ 493 (885)
.......+|.+++||+.++.++|.+||..|-. |.. |.++.+ ..|++.|-|||+|.+.++|..|....+
T Consensus 275 ---p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~h----- 345 (508)
T KOG1365|consen 275 ---PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCH----- 345 (508)
T ss_pred ---CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHH-----
Confidence 01222469999999999999999999998864 333 555555 468999999999999999999999998
Q ss_pred CeeecCeEEEEEEccC
Q 002741 494 GIFLKGRQLTVLKALD 509 (885)
Q Consensus 494 g~~l~gr~l~V~~a~~ 509 (885)
.....+|.|.|..+.-
T Consensus 346 k~~mk~RYiEvfp~S~ 361 (508)
T KOG1365|consen 346 KKLMKSRYIEVFPCSV 361 (508)
T ss_pred HhhcccceEEEeeccH
Confidence 6777799999998764
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.47 E-value=1.8e-12 Score=127.31 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCC-CCCceeEEEEEecCHHHHHHHHHHhCCcee---CCeeEE
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD-TGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRPIA 289 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~g~~~g~afV~F~~~e~A~~Al~~lng~~i---~g~~i~ 289 (885)
..-++|||.+||.++...+|+.+|..|-.-+.+.|-.... ..-.+.+|||.|.+..+|.+|+..|||..| .+..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3457999999999999999999999987766666643221 123457999999999999999999999999 588999
Q ss_pred EEeecCCC
Q 002741 290 VDWAVPKN 297 (885)
Q Consensus 290 V~~a~~k~ 297 (885)
|++++...
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99987543
No 62
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=4.7e-12 Score=124.44 Aligned_cols=210 Identities=24% Similarity=0.263 Sum_probs=127.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEee-cCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec---
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVL-HQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--- 498 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~-~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~--- 498 (885)
..-+||||.+||.++...+|..+|..|-.-+.+.+-. ++....++.+|||.|.+..+|..|+.+|| |..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLN-----GvrFDpE~ 106 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALN-----GVRFDPET 106 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhc-----Ceeecccc
Confidence 3458999999999999999999999987767664433 33333466899999999999999999999 99996
Q ss_pred CeEEEEEEccChhhhchhhhhhhccc----ccccccchhh-------ccCcccCC----CCCCCCCChhhHHHHHHHHHH
Q 002741 499 GRQLTVLKALDKKLAHDKEIDKSKNE----TNDHRNLYLA-------KEGLILEG----TPAAEGVSDDDMSKRQMLHEK 563 (885)
Q Consensus 499 gr~l~V~~a~~k~~~~~~~~~~~~~~----~~~~~~~~l~-------~eg~~~~~----sp~~~~~s~~d~~~r~~~~~~ 563 (885)
+..|+|.+|+......+......-.. ..+.++.... .++...+. ...+......+......+..
T Consensus 107 ~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a- 185 (284)
T KOG1457|consen 107 GSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSA- 185 (284)
T ss_pred CceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhh-
Confidence 78999999986433322111110000 0000000000 01111000 00001111111111000000
Q ss_pred hhhccCC--------C---CCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCC
Q 002741 564 KMTKLQS--------P---NFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHY 632 (885)
Q Consensus 564 ~~~~~~~--------p---~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~ 632 (885)
...+.+. . ....--.+|||-||..++||++|+.+|+. |.....++|--. .
T Consensus 186 ~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~---------~~gf~~l~~~~~----------~ 246 (284)
T KOG1457|consen 186 PDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR---------YPGFHILKIRAR----------G 246 (284)
T ss_pred hhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh---------CCCceEEEEecC----------C
Confidence 0000000 0 00001136999999999999999999995 777665655421 1
Q ss_pred cceEEEEEeCCHHHHHHHHHHhcCC
Q 002741 633 SRGVAFVEFTEHQHALVALRVLNNN 657 (885)
Q Consensus 633 skG~aFV~F~s~e~A~~Al~~lng~ 657 (885)
....|||+|.+.+.|..||..|+|+
T Consensus 247 g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 247 GMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred CcceEeecHHHHHHHHHHHHHhhcc
Confidence 2459999999999999999999997
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=5.4e-13 Score=133.25 Aligned_cols=84 Identities=31% Similarity=0.670 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
..+..+|.|.||+.+++|++|+++|.+||.|..|.|.+++++|.++|||||.|.+.++|.+||..|||.-++.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 002741 293 AVPK 296 (885)
Q Consensus 293 a~~k 296 (885)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9886
No 64
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.38 E-value=2.1e-12 Score=108.89 Aligned_cols=70 Identities=37% Similarity=0.668 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 002741 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (885)
Q Consensus 219 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~ 289 (885)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++..++||||+|.+.++|..|+..|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 5788999999999999999999999999999999985
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.37 E-value=2.2e-11 Score=127.33 Aligned_cols=200 Identities=16% Similarity=0.251 Sum_probs=132.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCC
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~ 493 (885)
...++.|||.|||.++|.+++.++|+.+|.|.. |.|.++. .|..+|-|+|+|...++..-|+..|+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD----- 204 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD----- 204 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC-----
Confidence 345578999999999999999999999998754 6666664 58899999999999999999999999
Q ss_pred CeeecCeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHh-----hhcc
Q 002741 494 GIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKK-----MTKL 568 (885)
Q Consensus 494 g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~-----~~~~ 568 (885)
+..|.|+.|.|..|.-..........+.+ ....+. ++....+.+ ...
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k--------------------------~k~~~~-kk~~k~q~k~~dw~pd~- 256 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEK--------------------------GKCKDK-KKLKKQQQKLLDWRPDR- 256 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccc--------------------------cccccH-HHHHHHHHhhcccCCCc-
Confidence 89999999999998632110000000000 000000 011111111 011
Q ss_pred CCCCCCcccceEEEcCC--Ccc--cCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCH
Q 002741 569 QSPNFHVSRTRLVIYNL--PKS--MTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEH 644 (885)
Q Consensus 569 ~~p~~~~s~~~L~V~NL--P~~--vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~ 644 (885)
..|.-....++|.|+|| |.. .+.+.|.++=. -+++.+. .||.|.+|.|.-. ++.|.+-|.|.+.
T Consensus 257 ~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke-dl~eec~-K~G~v~~vvv~d~----------hPdGvvtV~f~n~ 324 (382)
T KOG1548|consen 257 DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE-DLTEECE-KFGQVRKVVVYDR----------HPDGVVTVSFRNN 324 (382)
T ss_pred cccccccCCcEEEeeecCCHHHhccCHHHHHHHHH-HHHHHHH-HhCCcceEEEecc----------CCCceeEEEeCCh
Confidence 12333334578999999 433 34333333322 2222222 3999999977632 6789999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCceEEEE
Q 002741 645 QHALVALRVLNNNPKTFGPEHRPIVEF 671 (885)
Q Consensus 645 e~A~~Al~~lng~p~~~g~~~rliV~~ 671 (885)
++|..|++.|+| ++|+ .|-|..+
T Consensus 325 eeA~~ciq~m~G--R~fd--gRql~A~ 347 (382)
T KOG1548|consen 325 EEADQCIQTMDG--RWFD--GRQLTAS 347 (382)
T ss_pred HHHHHHHHHhcC--eeec--ceEEEEE
Confidence 999999999999 4888 5554333
No 66
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=3.1e-12 Score=107.91 Aligned_cols=70 Identities=30% Similarity=0.572 Sum_probs=66.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 428 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
|||+|||.++|+++|+++|+.||.|..+.++.+ .++..+++|||+|.+.++|..|++.|+ |..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~-----g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELN-----GKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcC-----CCEECccCcC
Confidence 799999999999999999999999999998887 678899999999999999999999999 9999999885
No 67
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.36 E-value=1.5e-11 Score=128.66 Aligned_cols=166 Identities=17% Similarity=0.269 Sum_probs=136.4
Q ss_pred ccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEE--------EEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHH
Q 002741 117 KQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS--------VTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACAS 188 (885)
Q Consensus 117 ~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~A 188 (885)
.+..+..|||.|||.++|.+++.++|++||.|.. |++.++ ..|.-+|=|.+.|-..+++..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd----------~~G~lKGDaLc~y~K~ESVeLA 199 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD----------NQGKLKGDALCCYIKRESVELA 199 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec----------CCCCccCceEEEeecccHHHHH
Confidence 4567788999999999999999999999998865 555554 4589999999999999999999
Q ss_pred HHHhCCceecCeeeeecccC--------------------------------------CCCCCCCCcEEEEcCCCC----
Q 002741 189 VALLHQKEIKGGTVWARQLG--------------------------------------GEGSKTQKWKLIIRNIPF---- 226 (885)
Q Consensus 189 i~~ln~~~i~g~~i~v~~~~--------------------------------------~~~~~~~~~~l~V~nLp~---- 226 (885)
+..|++..+.|..|+|.... ........++|+++||=.
T Consensus 200 ~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~ 279 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDF 279 (382)
T ss_pred HHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHh
Confidence 99999999999999885421 011123457999999832
Q ss_pred CCC-------HHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 227 KAK-------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 227 ~~t-------e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
..+ .++|.+-+..||.|.+|.|.-.. +.|.+-|.|.+.++|..||..|+|+.|.||.|......-+
T Consensus 280 ~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 280 EKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 223 46677789999999999886432 7789999999999999999999999999999999876543
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=4e-12 Score=127.12 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
..++|.|.||+.++++.+|+++|.+||.|..|.|.+|++||.++|||||.|.+.++|.+||..|| |+-++.-.|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln-----G~gyd~LILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN-----GYGYDNLILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc-----CcccceEEEE
Confidence 55799999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 002741 504 VLKALDK 510 (885)
Q Consensus 504 V~~a~~k 510 (885)
|.|+.|+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2e-12 Score=130.36 Aligned_cols=168 Identities=22% Similarity=0.366 Sum_probs=130.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
..|||++||+.+.+.+|..+|..||.|..|.+. .||+||+|.+.-+|..|+..||+..|.|-.+.|+|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 379999999999999999999999999988773 479999999999999999999999999988999998643
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCCC
Q 002741 297 NIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLSD 376 (885)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~~ 376 (885)
........ . ..... .
T Consensus 74 ~~~~g~~~---------~--------------------------------g~r~~----~-------------------- 88 (216)
T KOG0106|consen 74 RRGRGRPR---------G--------------------------------GDRRS----D-------------------- 88 (216)
T ss_pred ccccCCCC---------C--------------------------------CCccc----h--------------------
Confidence 21110000 0 00000 0
Q ss_pred chhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEE
Q 002741 377 DSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFV 456 (885)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~ 456 (885)
+.. ........+.|+|.|++..+...+|.+.|.++|.+.+..
T Consensus 89 ----------------------~~~----------------~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~ 130 (216)
T KOG0106|consen 89 ----------------------SRR----------------YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVD 130 (216)
T ss_pred ----------------------hhc----------------cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhh
Confidence 000 000122347899999999999999999999999996553
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEcc
Q 002741 457 PVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (885)
Q Consensus 457 i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~ 508 (885)
+ ..+++||+|.+.++|.+|+..++ +..+.|+.|.+....
T Consensus 131 ~--------~~~~~~v~Fs~~~da~ra~~~l~-----~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 131 A--------RRNFAFVEFSEQEDAKRALEKLD-----GKKLNGRRISVEKNS 169 (216)
T ss_pred h--------hccccceeehhhhhhhhcchhcc-----chhhcCceeeecccC
Confidence 3 36789999999999999999999 999999999995443
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.4e-12 Score=127.32 Aligned_cols=79 Identities=32% Similarity=0.502 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
-+.|||+||++.++.+.|+.+|++||+|++..|+.|+.+++++|||||.|.+.++|.+|++..| -.|+||+..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~------piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN------PIIDGRKANC 85 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC------Cccccccccc
Confidence 3689999999999999999999999999999999999999999999999999999999998876 7899999999
Q ss_pred EEccC
Q 002741 505 LKALD 509 (885)
Q Consensus 505 ~~a~~ 509 (885)
.+|.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98763
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.1e-12 Score=114.51 Aligned_cols=79 Identities=25% Similarity=0.550 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.+++|||+||++.++|++|.++|+.+|+|..|.+-.|..+..+.|||||+|.+.++|..|+..++|+.++.++|+|.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4579999999999999999999999999999999888888889999999999999999999999999999999999986
No 72
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=3.4e-12 Score=128.71 Aligned_cols=147 Identities=29% Similarity=0.445 Sum_probs=124.9
Q ss_pred cEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCee
Q 002741 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (885)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (885)
..||||+||+.+.+.+|..+|..||.|..|.+ ..||+||+|.+..+|..|+..+|+..|.|..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-----------------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-----------------KNGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-----------------ecccceeccCchhhhhcccchhcCceeccee
Confidence 35899999999999999999999999999887 3478999999999999999999999999987
Q ss_pred eeecccCC------C---C-----------CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEE
Q 002741 202 VWARQLGG------E---G-----------SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFA 261 (885)
Q Consensus 202 i~v~~~~~------~---~-----------~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~a 261 (885)
+.+..... . + .....+.++|.|++..+.+.+|.++|..+|.+....+ ..+++
T Consensus 65 ~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~ 136 (216)
T KOG0106|consen 65 LVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFA 136 (216)
T ss_pred eeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hcccc
Confidence 55433221 0 0 1233578999999999999999999999999954433 45689
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 262 FVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 262 fV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
||+|.+.++|..|+..|++..+.++.|.+...
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999999999443
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=107.77 Aligned_cols=83 Identities=24% Similarity=0.399 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
+..++.|||+|||+.+|.++..++|.+||.|..|+|=..+ ..+|.|||.|++..+|.+|++.|+ |..+.++.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhls-----g~n~~~ry 86 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLS-----GYNVDNRY 86 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhc-----ccccCCce
Confidence 3456799999999999999999999999999999886554 458999999999999999999999 99999999
Q ss_pred EEEEEccChhh
Q 002741 502 LTVLKALDKKL 512 (885)
Q Consensus 502 l~V~~a~~k~~ 512 (885)
|.|.+..+...
T Consensus 87 l~vlyyq~~~~ 97 (124)
T KOG0114|consen 87 LVVLYYQPEDA 97 (124)
T ss_pred EEEEecCHHHH
Confidence 99999877543
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=3.3e-11 Score=129.42 Aligned_cols=80 Identities=34% Similarity=0.663 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
..+|||+|||..+|+++|.++|..||.|..|.+..+..+|.++|||||.|.+.++|..|+..|+|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999754
No 75
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.8e-11 Score=135.74 Aligned_cols=349 Identities=15% Similarity=0.191 Sum_probs=195.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~ 291 (885)
......+|+|-|||..|++++|+.+|+.||+|..|+.-+. .+|.+||+|-+..+|++|++.|++..|.|+.|.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k-- 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK-- 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc--
Confidence 3556789999999999999999999999999998665443 789999999999999999999999999999988
Q ss_pred eecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCC
Q 002741 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (885)
Q Consensus 292 ~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~ 371 (885)
.|........... . ..++..... .+
T Consensus 144 --~~~~~~~~~~~~~----------------------------------------~----------~~~~~~~~~---p~ 168 (549)
T KOG4660|consen 144 --RPGGARRAMGLQS----------------------------------------G----------TSFLNHFGS---PL 168 (549)
T ss_pred --CCCcccccchhcc----------------------------------------c----------chhhhhccc---hh
Confidence 1221110000000 0 001110000 00
Q ss_pred CCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCC
Q 002741 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGE 451 (885)
Q Consensus 372 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~ 451 (885)
.. +. | ..-....+|+- |++..+..-++..|+-+|.
T Consensus 169 a~-s~---------------------------p----------------gg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~ 203 (549)
T KOG4660|consen 169 AN-SP---------------------------P----------------GGWPRGQLFGM-LSPTRSSILLEHISSVDGS 203 (549)
T ss_pred hc-CC---------------------------C----------------CCCcCCcceee-eccchhhhhhhcchhccCc
Confidence 00 00 0 00001133333 8888887777777777887
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChhhhchhhhhhhcccccccccc
Q 002741 452 VVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNL 531 (885)
Q Consensus 452 I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~ 531 (885)
+.. +. ++.-...-|+.|.+..++..+.. . .|..+.+....+.+..+-...+...............+.
T Consensus 204 ~~~-~~-----~~~~~hq~~~~~~~~~s~a~~~~--~----~G~~~s~~~~v~t~S~~~g~~n~~~~~r~~~~~~~~~~~ 271 (549)
T KOG4660|consen 204 SPG-RE-----TPLLNHQRFVEFADNRSYAFSEP--R----GGFLISNSSGVITFSGPGGVWNPFPSRRQRQNSSSSHYE 271 (549)
T ss_pred ccc-cc-----ccchhhhhhhhhccccchhhccc--C----CceecCCCCceEEecCCCcccCCccccccccccCccccc
Confidence 655 32 22222356778887777733332 2 167777777777776653322211111100000000000
Q ss_pred ----------hh-hccC-cccCCCCC---------CCCCC--hhhHHHHHH----HH-HHhh-------------hccCC
Q 002741 532 ----------YL-AKEG-LILEGTPA---------AEGVS--DDDMSKRQM----LH-EKKM-------------TKLQS 570 (885)
Q Consensus 532 ----------~l-~~eg-~~~~~sp~---------~~~~s--~~d~~~r~~----~~-~~~~-------------~~~~~ 570 (885)
.+ ...+ .+...+++ ..++. ...+..+.. .+ .... ..+..
T Consensus 272 ~hi~~~Ps~~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~~~~~~~~ 351 (549)
T KOG4660|consen 272 HHIGSAPSMHHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYTSQNDYPV 351 (549)
T ss_pred CccCCCcccccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCccccccccccccccccc
Confidence 00 0000 00001110 00000 000000000 00 0000 00111
Q ss_pred C---CCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhh--------c-----------cCCCCeEEEEEeecccCCccC
Q 002741 571 P---NFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRA--------S-----------KQKPVIKQIKFLQSLKKGKVD 628 (885)
Q Consensus 571 p---~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~--------~-----------~~~G~I~~v~i~~d~~~~~~~ 628 (885)
+ ++...++++.|+|||...+..+|..+...++.... . +..|.-..+.++.|..+-
T Consensus 352 ~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nk--- 428 (549)
T KOG4660|consen 352 ELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNK--- 428 (549)
T ss_pred ccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccc---
Confidence 1 33344556666666666666666666665554322 1 357888888888887544
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCCCCceEEEEEcccHHHHHHHHHHH
Q 002741 629 TKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQTLKQRNAKI 686 (885)
Q Consensus 629 ~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~~~~~~~r~~~~ 686 (885)
.+.|||||.|.+++++..+.+++||. .|.......+++|+...+|.+....++-
T Consensus 429 ---cNvGYAFINm~sp~ai~~F~kAFnGk-~W~~FnS~Kia~itYArIQGk~~Li~hF 482 (549)
T KOG4660|consen 429 ---CNVGYAFINMTSPEAIIRFYKAFNGK-KWEKFNSEKIASITYARIQGKEALIEHF 482 (549)
T ss_pred ---cccceeEEeecCHHHHHHHHHHHcCC-chhhhcceeeeeeehhhhhchHHHHHHh
Confidence 78899999999999999999999997 6655567888999887777665444443
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=2.7e-11 Score=102.48 Aligned_cols=70 Identities=34% Similarity=0.632 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 002741 219 LIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (885)
Q Consensus 219 l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~ 289 (885)
|||+|||+.+++++|+++|+.||.|..+.+..+.. |..+++|||+|.+.++|.+|+..+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999999999999874
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.27 E-value=2.8e-11 Score=102.43 Aligned_cols=70 Identities=29% Similarity=0.500 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 428 IFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 428 l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
|||+|||+.+++++|+++|+.||.|..+.+..++. +.++++|||+|.+.++|.+|+..++ +..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~-----~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLN-----GKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHT-----TEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCC-----CcEECCEEcC
Confidence 79999999999999999999999999999998876 8899999999999999999999999 9999999884
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.3e-11 Score=128.13 Aligned_cols=102 Identities=29% Similarity=0.448 Sum_probs=89.3
Q ss_pred CCceecCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHH
Q 002741 193 HQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAE 272 (885)
Q Consensus 193 n~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~ 272 (885)
++....|..+...+...........+|+|.|||+..-+-||+.+|.+||.|.+|.|+.+. .| ++|||||.|++.+||+
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RG-SKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RG-SKGFGFVTMENPADAD 150 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CC-CCccceEEecChhhHH
Confidence 555666777766665555566667899999999999999999999999999999999864 34 9999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeecCC
Q 002741 273 SAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 273 ~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
+|..+|||..+.||.|.|..+.++
T Consensus 151 RARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 151 RARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHhhcceeeceEEEEeccchh
Confidence 999999999999999999999766
No 79
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=110.87 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
.++||||+||++.++|++|.++|+..|.|..|.+=.|+.+..+.|||||+|-+.++|..|+.-++ +..|+.++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryis-----gtrLddr~ir 109 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYIS-----GTRLDDRPIR 109 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhc-----cCccccccee
Confidence 46899999999999999999999999999999888899999999999999999999999999999 9999999999
Q ss_pred EEEcc
Q 002741 504 VLKAL 508 (885)
Q Consensus 504 V~~a~ 508 (885)
|.|..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99953
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=9e-11 Score=126.06 Aligned_cols=174 Identities=25% Similarity=0.317 Sum_probs=124.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
.++|||+|||+++|+++|.++|..||.|..+.+..++.++.++|||||.|.+.++|..|+..++ +..|.|++|.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~-----~~~~~~~~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN-----GKELEGRPLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC-----CCeECCceeEe
Confidence 5899999999999999999999999999999999998899999999999999999999999999 99999999999
Q ss_pred EEccC-hhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEc
Q 002741 505 LKALD-KKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIY 583 (885)
Q Consensus 505 ~~a~~-k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~ 583 (885)
.++.+ ......... ........ . ..............+++.
T Consensus 190 ~~~~~~~~~~~~~~~-----------~~~~~~~~----~-----------------------~~~~~~~~~~~~~~~~~~ 231 (306)
T COG0724 190 QKAQPASQPRSELSN-----------NLDASFAK----K-----------------------LSRGKALLLEKSDNLYVG 231 (306)
T ss_pred ecccccccccccccc-----------ccchhhhc----c-----------------------ccccccccccccceeecc
Confidence 99754 100000000 00000000 0 000001112234679999
Q ss_pred CCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002741 584 NLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (885)
Q Consensus 584 NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng 656 (885)
|++..++..++..+|. .+|.+..+.+...... .....+.++.+.....+..++.....
T Consensus 232 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
T COG0724 232 NLPLKTAEEELADLFK---------SRGDIVRASLPPSKDG------KIPKSRSFVGNEASKDALESNSRGNK 289 (306)
T ss_pred ccccccchhHHHHhcc---------ccccceeeeccCCCCC------cccccccccchhHHHhhhhhhccccc
Confidence 9999999999999999 5888866666544321 13344555666666666665555444
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2e-11 Score=116.31 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=73.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
...+.|||+||+..+++.+|..+|..||+|..|.|..+ ..|||||+|.++.+|+.|+..|+|..|+|..|.|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34679999999999999999999999999999999875 6799999999999999999999999999999999998
Q ss_pred cCCC
Q 002741 294 VPKN 297 (885)
Q Consensus 294 ~~k~ 297 (885)
.-..
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6443
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.20 E-value=6.6e-11 Score=122.60 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|..|| .|+ |..|.|+.|.|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLn-----G~~l~gr~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLS-----GATIVDQSVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-Hhc-----CCeeCCceEEE
Confidence 47999999999999999999999999999999988753 4799999999999999999 599 99999999999
Q ss_pred EEccCh
Q 002741 505 LKALDK 510 (885)
Q Consensus 505 ~~a~~k 510 (885)
.++.+.
T Consensus 75 t~a~~~ 80 (260)
T PLN03120 75 TPAEDY 80 (260)
T ss_pred EeccCC
Confidence 998643
No 83
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.19 E-value=2.1e-10 Score=128.81 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=115.9
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCe
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (885)
.+.+-+.+.+...+..+++++|... .|.++.|..+. -.+...|-++|.|....++.+|+.. |...+-.+
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~---------v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R 379 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENR---------VAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNR 379 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhh---------cCCCcCCceEEEecCcchHHHHHhc-Cchhhhhc
Confidence 4456677889999999999998744 34444332221 1233478899999999999999875 44444444
Q ss_pred eeeecccCC----------------------------------C-----CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCC
Q 002741 201 TVWARQLGG----------------------------------E-----GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG 241 (885)
Q Consensus 201 ~i~v~~~~~----------------------------------~-----~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G 241 (885)
.+.+.+... . ....-..+|||..||..+++.++.++|...-
T Consensus 380 ~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~ 459 (944)
T KOG4307|consen 380 PFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA 459 (944)
T ss_pred ceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh
Confidence 443211100 0 0112357999999999999999999999977
Q ss_pred CeeE-EEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 242 LVWN-VYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 242 ~I~~-v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
.|+. |.|.+- -++..++.|||.|..++++..|+..-+...++.+.|+|.-...+
T Consensus 460 ~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 460 AVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred hhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 7776 555443 36778899999999999999888866677778889999865443
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.19 E-value=5.8e-11 Score=123.01 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=70.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. .+|||||+|.++++|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46999999999999999999999999999999998753 57999999999999999996 999999999999999753
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=4e-11 Score=108.98 Aligned_cols=85 Identities=26% Similarity=0.542 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~ 291 (885)
.....+.|||.++...+|+++|.+.|..||+|.++.+..|..+|..+|||+|+|.+.++|+.|+..|||..|.|..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q 002741 292 WAVPK 296 (885)
Q Consensus 292 ~a~~k 296 (885)
|+.-+
T Consensus 148 w~Fv~ 152 (170)
T KOG0130|consen 148 WCFVK 152 (170)
T ss_pred EEEec
Confidence 98644
No 86
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=8.5e-11 Score=122.07 Aligned_cols=79 Identities=23% Similarity=0.525 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
-++|+|.||||..-+-||+.+|.+||.|.+|.|+.+. .-++|||||.|++.+||++|.++|| |.++.||+|.|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LH-----gt~VEGRkIEV 168 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELH-----GTVVEGRKIEV 168 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhh-----cceeeceEEEE
Confidence 3689999999999999999999999999999999874 4579999999999999999999999 99999999999
Q ss_pred EEccCh
Q 002741 505 LKALDK 510 (885)
Q Consensus 505 ~~a~~k 510 (885)
..|..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 999876
No 87
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.17 E-value=1.5e-09 Score=122.02 Aligned_cols=159 Identities=9% Similarity=-0.038 Sum_probs=104.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccccccccch
Q 002741 8 NEHRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSS 87 (885)
Q Consensus 8 g~srG~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (885)
+-..|-+||.|..+.++.+|++. |.+.+-.|.|.|.++....... -...+.+..+ ...-.++.-..+.
T Consensus 349 ~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~~~----a~~~~~~~~~-~~~~~~hg~p~~~------ 416 (944)
T KOG4307|consen 349 PPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGRNG----APPFQAGVPP-PVIQNNHGRPIAP------ 416 (944)
T ss_pred CCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccccc----CccccccCCC-CcccccCCCCCCC------
Confidence 34489999999999999999999 8899999999998885432111 0000000000 0000000000000
Q ss_pred hhhhcCCCCCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEE-EEeeCCchhhhhcccc
Q 002741 88 KLLESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCS-VTYPLPKEELEQHGLA 166 (885)
Q Consensus 88 ~~~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~k~~~~~~~~~ 166 (885)
+|-.+..... +-.....+.+|||-.||..+++.++.++|...-.|+. |.|- +.
T Consensus 417 ----------pr~~~~~gq~------vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt----------~~ 470 (944)
T KOG4307|consen 417 ----------PRAMVRPGQN------VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT----------RL 470 (944)
T ss_pred ----------cccccCCCCC------CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec----------cC
Confidence 0000000000 1144567889999999999999999999998888877 5552 23
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHHhCCceecCeeeee
Q 002741 167 QEGCKMDASAVLYTTVKSACASVALLHQKEIKGGTVWA 204 (885)
Q Consensus 167 ~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v 204 (885)
.++.-++.|||.|..++++..|...-+...++-+.|+|
T Consensus 471 P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 471 PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 67888999999999999999988877777777777765
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=4.2e-11 Score=119.64 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
+.-++|||++|++.++.+.|+++|++||+|++..|+.|+.+|+++|||||.|.+.+.|.+|++. -.-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 3457999999999999999999999999999999999999999999999999999999999985 455789999888876
Q ss_pred c
Q 002741 294 V 294 (885)
Q Consensus 294 ~ 294 (885)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 89
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=7.8e-12 Score=119.40 Aligned_cols=81 Identities=28% Similarity=0.443 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
..+.-|||+|||+.+||.+|...|++||.|..|.+++|..||+++||||+.|.+..+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q 002741 294 V 294 (885)
Q Consensus 294 ~ 294 (885)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=7e-12 Score=119.70 Aligned_cols=82 Identities=27% Similarity=0.439 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
.+.-|||+|||+++||.||..+|++||.|+.|.+++|..||+++||||++|++.-+..-|+..|| |..|.||.|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~N-----Giki~gRtir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLN-----GIKILGRTIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccC-----CceecceeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred EEEccCh
Q 002741 504 VLKALDK 510 (885)
Q Consensus 504 V~~a~~k 510 (885)
|......
T Consensus 109 VDHv~~Y 115 (219)
T KOG0126|consen 109 VDHVSNY 115 (219)
T ss_pred eeecccc
Confidence 9986543
No 91
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.5e-10 Score=118.96 Aligned_cols=81 Identities=23% Similarity=0.461 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l 502 (885)
.+-+||||.-|+++++|..|+..|+.||.|..|.||.++.||+++|||||+|++.-+...|.+..+ |..|+|+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-----G~~Idgrri 173 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-----GIKIDGRRI 173 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-----CceecCcEE
Confidence 455899999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEcc
Q 002741 503 TVLKAL 508 (885)
Q Consensus 503 ~V~~a~ 508 (885)
.|.+-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 999844
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.7e-11 Score=117.77 Aligned_cols=88 Identities=27% Similarity=0.437 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
....++|||++|...+++.-|...|=+||.|..|.++.|-++++.+|||||+|.-.|+|.+||..||+.+|.|+.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 002741 293 AVPKNIYS 300 (885)
Q Consensus 293 a~~k~~~~ 300 (885)
+.|.....
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 99886543
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.14 E-value=1.1e-10 Score=126.11 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCH--HHHHHHHHHhCCceeCCeeEEEE
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK--RDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~--e~A~~Al~~lng~~i~g~~i~V~ 291 (885)
....+|||+||++.+++++|..+|..||.|.+|.|++ ++| +|||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457999999999999999999999999999999994 466 99999999987 78999999999999999999999
Q ss_pred eecCCC
Q 002741 292 WAVPKN 297 (885)
Q Consensus 292 ~a~~k~ 297 (885)
.|.|..
T Consensus 84 KAKP~Y 89 (759)
T PLN03213 84 KAKEHY 89 (759)
T ss_pred eccHHH
Confidence 997753
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.13 E-value=7.2e-11 Score=115.01 Aligned_cols=81 Identities=33% Similarity=0.576 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.....|.|-||-+-++.++|+.+|++||.|-.|.|++|..++.++|||||.|....+|+.|+.+|+|..|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 002741 294 V 294 (885)
Q Consensus 294 ~ 294 (885)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 4
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=99.33 Aligned_cols=83 Identities=28% Similarity=0.462 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
+.-.+.|||+|||+.+|.+++.++|..||.|..|+|-..+. .+|-|||.|++..+|.+|+..|+|..+.++.+.|-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 44567899999999999999999999999999999976543 789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002741 293 AVPKNI 298 (885)
Q Consensus 293 a~~k~~ 298 (885)
..|...
T Consensus 92 yq~~~~ 97 (124)
T KOG0114|consen 92 YQPEDA 97 (124)
T ss_pred cCHHHH
Confidence 876643
No 96
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.11 E-value=1.1e-10 Score=113.76 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
-.+|.|-||-+-++.++|+.+|++||.|-.|.|..|..|+.++|||||.|....+|+.|+++|+ |.+|+|+.|.|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damD-----G~~ldgRelrV 87 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMD-----GAVLDGRELRV 87 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhc-----ceeeccceeee
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred EEcc
Q 002741 505 LKAL 508 (885)
Q Consensus 505 ~~a~ 508 (885)
++|.
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9875
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.2e-10 Score=106.00 Aligned_cols=85 Identities=24% Similarity=0.359 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 421 ~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
...++..|||.++...+|+++|.+.|..||.|..+.+-.|+.||..+|||+|+|.+.++|+.|+.++| |..|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~N-----g~~ll~q 142 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALN-----GAELLGQ 142 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhcc-----chhhhCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEEccCh
Q 002741 501 QLTVLKALDK 510 (885)
Q Consensus 501 ~l~V~~a~~k 510 (885)
.|.|.|+.-+
T Consensus 143 ~v~VDw~Fv~ 152 (170)
T KOG0130|consen 143 NVSVDWCFVK 152 (170)
T ss_pred ceeEEEEEec
Confidence 9999999754
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.10 E-value=2.4e-10 Score=123.67 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHhccCCCCCeeecCeE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTV--EAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~--e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
.+.+|||+||++.+++++|..+|+.||.|..|.|+ +.+| +|||||+|.+. .++.+||..|| |..+.|+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLN-----GAEWKGR~ 79 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYN-----GCVWKGGR 79 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhc-----CCeecCce
Confidence 34699999999999999999999999999999998 4466 99999999987 78999999999 99999999
Q ss_pred EEEEEccCh
Q 002741 502 LTVLKALDK 510 (885)
Q Consensus 502 l~V~~a~~k 510 (885)
|.|..|.+.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999999874
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.10 E-value=4.7e-10 Score=94.04 Aligned_cols=72 Identities=38% Similarity=0.565 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002741 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (885)
Q Consensus 427 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~ 505 (885)
+|||+|||..++.++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|..|+..++ +..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~-----~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALN-----GTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhC-----CcEECCEEEeeC
Confidence 58999999999999999999999999999888765 6788999999999999999999999 899999998873
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.09 E-value=1.5e-10 Score=129.71 Aligned_cols=83 Identities=35% Similarity=0.561 Sum_probs=79.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002741 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~ 505 (885)
+.|||+|+|+++++++|.++|+..|.|.+++++.|+.+|+++||||++|.+.++|..|++.|| |..+.||+|.|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN-----g~~~~gr~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN-----GAEFNGRKLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC-----CcccCCceEEee
Confidence 799999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EccChhhh
Q 002741 506 KALDKKLA 513 (885)
Q Consensus 506 ~a~~k~~~ 513 (885)
|+.....+
T Consensus 94 ~~~~~~~~ 101 (435)
T KOG0108|consen 94 YASNRKNA 101 (435)
T ss_pred cccccchh
Confidence 99865443
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=4.3e-10 Score=94.31 Aligned_cols=71 Identities=45% Similarity=0.789 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002741 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (885)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V 290 (885)
+|||+|||..++.++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|..|+..|++..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998765 668899999999999999999999999999999887
No 102
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.09 E-value=3.8e-10 Score=115.02 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
..++|||+||++.+|+++|+++|+.||.|.+|.|+++. ...+||||+|.++++|+.|+. |+|..|.+++|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999874 456899999999999999996 99999999999998753
No 103
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=2.7e-10 Score=108.65 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
..+.|||+||+..+++.||..+|..||.|..|-|-.. +-|||||+|+++-+|..|+..|+ |..|+|..|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LD-----G~~~cG~r~r 78 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLD-----GKDICGSRIR 78 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcC-----CccccCceEE
Confidence 3589999999999999999999999999999877554 48999999999999999999999 9999999999
Q ss_pred EEEccC
Q 002741 504 VLKALD 509 (885)
Q Consensus 504 V~~a~~ 509 (885)
|.+..-
T Consensus 79 VE~S~G 84 (195)
T KOG0107|consen 79 VELSTG 84 (195)
T ss_pred EEeecC
Confidence 999754
No 104
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.07 E-value=6.4e-10 Score=113.40 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
.+.+|||+||++.+|+++|+++|+.||.|.+|.|+.+. ...+||||+|.++++|..|+ .|+ |..|.+++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLn-----Ga~l~d~~I~ 74 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLS-----GATIVDQRVC 74 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcC-----CCeeCCceEE
Confidence 35799999999999999999999999999999999874 45689999999999999999 899 9999999999
Q ss_pred EEEccC
Q 002741 504 VLKALD 509 (885)
Q Consensus 504 V~~a~~ 509 (885)
|..+..
T Consensus 75 It~~~~ 80 (243)
T PLN03121 75 ITRWGQ 80 (243)
T ss_pred EEeCcc
Confidence 998764
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=4e-10 Score=115.82 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.+-++|||.-|+++++|..|+..|+.||+|..|.|+++..+|+++|||||+|...-+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred c
Q 002741 294 V 294 (885)
Q Consensus 294 ~ 294 (885)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=7.6e-10 Score=92.38 Aligned_cols=71 Identities=38% Similarity=0.550 Sum_probs=66.4
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002741 430 ICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (885)
Q Consensus 430 V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~ 505 (885)
|+|||..+++++|+++|..||.|..+.+..+..++.++|+|||.|.+.++|..|+..++ +..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-----~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-----GKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-----CCeeCCcEEEeC
Confidence 57999999999999999999999999998887778899999999999999999999999 899999998873
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-10 Score=113.79 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=79.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
.++|||++|..++|+.-|...|-+||.|..|.++.|..+++.+|||||+|.-.++|..||..|| +..|.||.|.|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMn-----esEL~GrtirV 84 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMN-----ESELFGRTIRV 84 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCc-----hhhhcceeEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred EEccChh
Q 002741 505 LKALDKK 511 (885)
Q Consensus 505 ~~a~~k~ 511 (885)
.+|.|..
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9999853
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.03 E-value=6.8e-10 Score=92.67 Aligned_cols=71 Identities=38% Similarity=0.707 Sum_probs=66.5
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002741 221 IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 221 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~ 291 (885)
|+|||..+++++|+.+|+.||.|..+.+..+..++.++|||||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999887778899999999999999999999999999999998873
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=3.1e-09 Score=89.56 Aligned_cols=74 Identities=39% Similarity=0.551 Sum_probs=68.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002741 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (885)
Q Consensus 427 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~ 506 (885)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ .++|+|||.|.+.++|..|+..++ +..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~-----~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALN-----GKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhC-----CCeECCeEEEEeC
Confidence 4899999999999999999999999999988877644 678999999999999999999999 8889999999864
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=2.9e-09 Score=89.75 Aligned_cols=74 Identities=39% Similarity=0.714 Sum_probs=68.3
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
+|+|+|||..+++++|+++|..||.|..+.+..+..+ ...++|||+|.+.++|..|+..+++..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999886543 5789999999999999999999999999999999874
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=1.1e-09 Score=122.87 Aligned_cols=81 Identities=32% Similarity=0.593 Sum_probs=78.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
+.|||+|||+++++++|..+|+..|.|.+++++.|+++|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred C
Q 002741 297 N 297 (885)
Q Consensus 297 ~ 297 (885)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=4e-11 Score=138.37 Aligned_cols=234 Identities=18% Similarity=0.134 Sum_probs=178.5
Q ss_pred CCcEEEEcCCCccchHH-HHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 120 VARTVIIGGLLNADMAE-EVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 120 ~~rtv~V~nLp~~~te~-~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
..+...+.++.+..... .++..|..+|.|..|.++.-. .....-.++++.+....+++.|.. ..+..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g---------~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a 639 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRG---------FKAHEQPQQQKVQSKHGSAESATV-PAGGALA 639 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCcccc---------ccccccchhhhhhccccchhhccc-ccccccC
Confidence 44455666665555544 678899999999999985421 112223378899999999988865 4666666
Q ss_pred CeeeeecccCCCCC----------CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCH
Q 002741 199 GGTVWARQLGGEGS----------KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (885)
Q Consensus 199 g~~i~v~~~~~~~~----------~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~ 268 (885)
++.+.+........ .....++||+||+..+.+.+|...|..+|.+..+.+......+..+|+|||.|..+
T Consensus 640 ~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~ 719 (881)
T KOG0128|consen 640 NRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKP 719 (881)
T ss_pred CccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecC
Confidence 66665533322111 12246899999999999999999999999988887775556788999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCC
Q 002741 269 RDAESAIQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNA 348 (885)
Q Consensus 269 e~A~~Al~~lng~~i~g~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~ 348 (885)
++|.+|+....++. .|
T Consensus 720 ~~~~aaV~f~d~~~-~g--------------------------------------------------------------- 735 (881)
T KOG0128|consen 720 EHAGAAVAFRDSCF-FG--------------------------------------------------------------- 735 (881)
T ss_pred Cchhhhhhhhhhhh-hh---------------------------------------------------------------
Confidence 99999998533221 11
Q ss_pred CchhHHHHHHHHhhhcccCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeE
Q 002741 349 DFDEEVDIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTI 428 (885)
Q Consensus 349 ~f~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l 428 (885)
...|
T Consensus 736 ----------------------------------------------------------------------------K~~v 739 (881)
T KOG0128|consen 736 ----------------------------------------------------------------------------KISV 739 (881)
T ss_pred ----------------------------------------------------------------------------hhhh
Confidence 0268
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEcc
Q 002741 429 FICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (885)
Q Consensus 429 ~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~ 508 (885)
+|+|+|+..|.++|+.+|+.+|.+.+.+++..+ .|+++|.|||.|.+..+|.+++.... +..+..+.+.|..+.
T Consensus 740 ~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d-----~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 740 AISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVD-----VAGKRENNGEVQVSN 813 (881)
T ss_pred heeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccch-----hhhhhhcCccccccC
Confidence 999999999999999999999999999877665 68999999999999999999998888 677766667666654
Q ss_pred C
Q 002741 509 D 509 (885)
Q Consensus 509 ~ 509 (885)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 4
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=2.4e-08 Score=111.38 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=115.8
Q ss_pred cccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCc
Q 002741 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (885)
Q Consensus 116 ~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~ 195 (885)
.+....++|+|-|||..+++++|+.+|+.||+|..|+. +-..+|.+||+|.+..+|+.|++.|++.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--------------t~~~~~~~~v~FyDvR~A~~Alk~l~~~ 135 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--------------TPNKRGIVFVEFYDVRDAERALKALNRR 135 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--------------ccccCceEEEEEeehHhHHHHHHHHHHH
Confidence 44567899999999999999999999999999998775 4556899999999999999999999999
Q ss_pred eecCeeeeecccCCC-----------------------CCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccC
Q 002741 196 EIKGGTVWARQLGGE-----------------------GSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (885)
Q Consensus 196 ~i~g~~i~v~~~~~~-----------------------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~ 252 (885)
.|.|+.|.. +.+.. ........++ +.|++.....-++..|.-+|.+.. ..
T Consensus 136 ~~~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~---- 208 (549)
T KOG4660|consen 136 EIAGKRIKR-PGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE---- 208 (549)
T ss_pred HhhhhhhcC-CCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc----
Confidence 999988762 11100 0001112222 238888888777777777888764 22
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCCCC
Q 002741 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPKNI 298 (885)
Q Consensus 253 ~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k~~ 298 (885)
++.-...-|+.|.+..++..+...+ |..+.+....+.++.+-..
T Consensus 209 -~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~~g~ 252 (549)
T KOG4660|consen 209 -TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGPGGV 252 (549)
T ss_pred -ccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCCCcc
Confidence 2222235688888888886666543 6777777777777766433
No 114
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.90 E-value=5.5e-09 Score=84.23 Aligned_cols=56 Identities=39% Similarity=0.726 Sum_probs=51.0
Q ss_pred HHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 233 IKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 233 L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
|+++|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997742 589999999999999999999999999999999986
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=9.9e-11 Score=135.21 Aligned_cols=199 Identities=19% Similarity=0.136 Sum_probs=162.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccccccccchhhhhc
Q 002741 13 FGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKLLES 92 (885)
Q Consensus 13 ~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (885)
++|+.+..+.+|+.|... .|..+.++.+.|..+.++..+.
T Consensus 616 ~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~ad~~~~~~--------------------------------------- 655 (881)
T KOG0128|consen 616 QQQKVQSKHGSAESATVP-AGGALANRSAAVGLADAEEKEE--------------------------------------- 655 (881)
T ss_pred hhhhhhccccchhhcccc-cccccCCccccCCCCCchhhhh---------------------------------------
Confidence 899999999999999888 8999999999998885543110
Q ss_pred CCCCCCcccccccccccCCcccccccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCc
Q 002741 93 GKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKM 172 (885)
Q Consensus 93 ~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~ 172 (885)
+........+..+++||.||+..+.+.+|...|..+|.+..+.+..- ...+..+
T Consensus 656 -----------------~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h---------~n~~~~r 709 (881)
T KOG0128|consen 656 -----------------NFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIH---------KNEKRFR 709 (881)
T ss_pred -----------------ccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHH---------hhccccc
Confidence 00000122356778999999999999999999999998887766311 2467889
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCceecCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccC
Q 002741 173 DASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT 252 (885)
Q Consensus 173 g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~ 252 (885)
|+|||.|..+++|.+||.....+.++ ...|+|+|+|+..|.++|+.+|..+|.+.+++++...
T Consensus 710 G~~Y~~F~~~~~~~aaV~f~d~~~~g-----------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAGAAVAFRDSCFFG-----------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred cceeeEeecCCchhhhhhhhhhhhhh-----------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 99999999999999999865554433 3589999999999999999999999999999877654
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecC
Q 002741 253 DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 253 ~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~ 295 (885)
.|+.+|.|||.|.++.+|..++..+++..+..+.+.|..+.|
T Consensus 773 -~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 773 -AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred -ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 789999999999999999999998888888777777777655
No 116
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.85 E-value=1.1e-08 Score=82.54 Aligned_cols=56 Identities=34% Similarity=0.497 Sum_probs=50.1
Q ss_pred HHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEc
Q 002741 442 VKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKA 507 (885)
Q Consensus 442 L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a 507 (885)
|.++|++||.|..+.+.... +++|||+|.+.++|..|+..|| |..++|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~-----~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLN-----GRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHT-----TSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC-----CCEECCcEEEEEEC
Confidence 68899999999999775442 6899999999999999999999 99999999999986
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=98.85 E-value=9.7e-09 Score=86.90 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=55.3
Q ss_pred HHHHHHHHh----ccCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 439 NEEVKQRFS----AFGEVVSFV-PVLHQVT--KRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 439 ee~L~~~F~----~fG~I~~v~-i~~~~~~--~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
+++|+++|+ .||.|.+|. ++.++.+ +.++|||||.|.+.++|.+|+..|| |..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~-----g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLN-----GRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhC-----CCEECCEEEEe
Confidence 578888888 999999995 7777766 8899999999999999999999999 99999999976
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.9e-08 Score=108.75 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=117.1
Q ss_pred cccCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCC-
Q 002741 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQ- 194 (885)
Q Consensus 116 ~~~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~- 194 (885)
.-...++.||||+||++++|+.|...|..||.+.. ..+...+ ..+..+...+.||+|+.|+++.++..-+..+..
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~---~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKAN---SRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCcc---ccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 34567899999999999999999999999998753 4432111 111111112235999999999999888776533
Q ss_pred ----------ceecCeeeeeccc---------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhc-CCCCeeEEEEcccCCC
Q 002741 195 ----------KEIKGGTVWARQL---------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFS-PVGLVWNVYIPHNTDT 254 (885)
Q Consensus 195 ----------~~i~g~~i~v~~~---------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~ 254 (885)
..+..+.+.+++- .....-....+|||++||.-++.++|..+|. -||.|..+-|-.|++-
T Consensus 330 ~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~ 409 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL 409 (520)
T ss_pred ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc
Confidence 1112222222211 0122334578999999999999999999999 4999999999999888
Q ss_pred CCceeEEEEEecCHHHHHHHHHH
Q 002741 255 GLSKGFAFVKFTCKRDAESAIQK 277 (885)
Q Consensus 255 g~~~g~afV~F~~~e~A~~Al~~ 277 (885)
+-.+|-|-|.|.+...-.+||.+
T Consensus 410 KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 410 KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCCCcceeeecccHHHHHHHhh
Confidence 88999999999999999999985
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=6.1e-08 Score=107.27 Aligned_cols=171 Identities=23% Similarity=0.305 Sum_probs=120.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCC---CCcee---EEEEEecCHHHHHHHHHHhCCceeCC
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKG---FAFVKFTCKRDAESAIQKFNGQKFGK 285 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---g~~~g---~afV~F~~~e~A~~Al~~lng~~i~g 285 (885)
...-.+.|||++||++++|+.|...|..||.+. |..+..... -..+| |+|+.|.++.....-|.++. ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~ 330 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGE 330 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcc
Confidence 445578999999999999999999999999986 677642211 12445 99999999998887766533 345
Q ss_pred eeEEEEeecCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcc
Q 002741 286 RPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLT 365 (885)
Q Consensus 286 ~~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~ 365 (885)
..+.+..+.|...-. ......| ...+.+|-..
T Consensus 331 ~~~yf~vss~~~k~k-----------------------------------~VQIrPW-~laDs~fv~d------------ 362 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDK-----------------------------------EVQIRPW-VLADSDFVLD------------ 362 (520)
T ss_pred cceEEEEecCccccc-----------------------------------ceeEEee-Eeccchhhhc------------
Confidence 555555443321000 0000000 0000001000
Q ss_pred cCCCCCCCCCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 002741 366 STTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQR 445 (885)
Q Consensus 366 ~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~ 445 (885)
. .....+.+||||++||--++.++|..+
T Consensus 363 -----------------~-----------------------------------sq~lDprrTVFVGgvprpl~A~eLA~i 390 (520)
T KOG0129|consen 363 -----------------H-----------------------------------NQPIDPRRTVFVGGLPRPLTAEELAMI 390 (520)
T ss_pred -----------------c-----------------------------------CcccCccceEEecCCCCcchHHHHHHH
Confidence 0 002234589999999999999999999
Q ss_pred Hh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 002741 446 FS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (885)
Q Consensus 446 F~-~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ 486 (885)
|. -||.|.++-|-.|++-+.++|-|-|.|.+..+-.+||.+
T Consensus 391 md~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 391 MEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99 699999999999988899999999999999999999976
No 120
>smart00361 RRM_1 RNA recognition motif.
Probab=98.82 E-value=1.1e-08 Score=86.56 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=54.5
Q ss_pred HHHHHHhhc----CCCCeeEEE-EcccCCC--CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002741 230 VNEIKDMFS----PVGLVWNVY-IPHNTDT--GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (885)
Q Consensus 230 e~~L~~~F~----~~G~I~~v~-i~~~~~~--g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V 290 (885)
+++|+++|+ .||.|.+|. |+.+..+ +.++|||||.|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 6655555 889999999999999999999999999999999986
No 121
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.3e-09 Score=108.44 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
.++...|||.-|.+-+|.++|.-+|+.||.|.+|.|++|..||.+..||||+|.+.+++++|.-.|. ...|+.+.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMd-----NvLIDDrR 310 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMD-----NVLIDDRR 310 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhc-----ceeeccce
Confidence 3456799999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 002741 502 LTVLKALDK 510 (885)
Q Consensus 502 l~V~~a~~k 510 (885)
|+|.|+.+-
T Consensus 311 IHVDFSQSV 319 (479)
T KOG0415|consen 311 IHVDFSQSV 319 (479)
T ss_pred EEeehhhhh
Confidence 999997653
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.3e-08 Score=106.66 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
.++...|||..|.+-+|.++|.-+|+.||.|.+|.|+++..+|.+..||||+|.+.++++.|.-+|++..|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 002741 293 AVPK 296 (885)
Q Consensus 293 a~~k 296 (885)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8643
No 123
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=4.5e-09 Score=103.55 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=119.0
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
...+||||+|+-..++++-|.++|-..|+|..|.|+.++ ++..+ ||||.|.++-+..-|+..+||..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~----------d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ----------DQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc----------cCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 467899999999999999999999999999999997764 45555 9999999999999999999999999
Q ss_pred CeeeeecccCCCCCCCCCcEEEEcC----CCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHH
Q 002741 199 GGTVWARQLGGEGSKTQKWKLIIRN----IPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (885)
Q Consensus 199 g~~i~v~~~~~~~~~~~~~~l~V~n----Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A 274 (885)
+..+.+. ++.++ |...++++.+...|+..|++..+++.++. +|+++.++|+.+-.....-.+
T Consensus 76 ~~e~q~~-------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 76 EDEEQRT-------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred cchhhcc-------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHH
Confidence 9888774 44455 67778999999999999999999999876 488999999998877777777
Q ss_pred HHHhCCce
Q 002741 275 IQKFNGQK 282 (885)
Q Consensus 275 l~~lng~~ 282 (885)
+....+..
T Consensus 142 ~~~y~~l~ 149 (267)
T KOG4454|consen 142 LDLYQGLE 149 (267)
T ss_pred hhhhcccC
Confidence 76555443
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.65 E-value=5.4e-08 Score=95.89 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCC-CCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
.....+||..+|..+.+.+|..+|.+| |.|..+++.++..||.++|||||+|.+++.|.-|-+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345689999999999999999999998 7788888889999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 002741 293 AVPK 296 (885)
Q Consensus 293 a~~k 296 (885)
..|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8665
No 125
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.62 E-value=4.4e-07 Score=80.86 Aligned_cols=82 Identities=24% Similarity=0.324 Sum_probs=68.1
Q ss_pred cceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002741 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (885)
Q Consensus 577 ~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng 656 (885)
+|||+|+|||...|.++|.+++.+.+ .|...-+.++.|..+. .+.|||||.|.+++.|..-.+.++|
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~-------~g~yDF~YLPiDf~~~------~N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHF-------KGKYDFFYLPIDFKNK------CNLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhc-------cCcceEEEeeeeccCC------CceEEEEEEcCCHHHHHHHHHHHcC
Confidence 47999999999999999999999753 6788889999998766 8899999999999999999999999
Q ss_pred CCCCCCCCCceE--EEEE
Q 002741 657 NPKTFGPEHRPI--VEFA 672 (885)
Q Consensus 657 ~p~~~g~~~rli--V~~A 672 (885)
. .+-.....-+ |.||
T Consensus 68 ~-~w~~~~s~Kvc~i~yA 84 (97)
T PF04059_consen 68 K-KWPNFNSKKVCEISYA 84 (97)
T ss_pred C-ccccCCCCcEEEEehh
Confidence 7 4432222333 6666
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.60 E-value=1.3e-07 Score=93.22 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhcc-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAF-GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~f-G~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
.....+||..+|..+.+.+|..+|.+| |.|..+++.+++.||.++|||||+|.+.+.|.-|-+.|| +..|.|+.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMN-----NYLl~e~l 121 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMN-----NYLLMEHL 121 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhh-----hhhhhhhe
Confidence 344689999999999999999999998 778888888999999999999999999999999999999 99999999
Q ss_pred EEEEEccCh
Q 002741 502 LTVLKALDK 510 (885)
Q Consensus 502 l~V~~a~~k 510 (885)
|.|.+-.+-
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999997654
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.57 E-value=5.7e-08 Score=104.50 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=135.1
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
...+++|++++...+.+.++-.++..+|.+..+.+... .....++|++++.|...+.+..|+...-...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~---------~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~ 156 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL---------EDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD 156 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhh---------ccccccccceeeccccHHHHHHHHHhhhccccc
Confidence 35789999999999999989999999997766665332 245778999999999999999999865444554
Q ss_pred Ceeeee-----cc---c--CCCCCCCCCcEEE-EcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecC
Q 002741 199 GGTVWA-----RQ---L--GGEGSKTQKWKLI-IRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTC 267 (885)
Q Consensus 199 g~~i~v-----~~---~--~~~~~~~~~~~l~-V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~ 267 (885)
+..+.. +. . ..........++| |++|+..+++++|+.+|..+|.|..++++.+..++...|||||.|..
T Consensus 157 ~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 157 GNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 443321 10 0 0011223344555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeecCCC
Q 002741 268 KRDAESAIQKFNGQKFGKRPIAVDWAVPKN 297 (885)
Q Consensus 268 ~e~A~~Al~~lng~~i~g~~i~V~~a~~k~ 297 (885)
...+..|+.. ....+.++++.|.+..+..
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred chhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999986 7888999999999887654
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=4.3e-08 Score=114.21 Aligned_cols=162 Identities=19% Similarity=0.204 Sum_probs=136.6
Q ss_pred cCCCcEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCcee
Q 002741 118 QRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEI 197 (885)
Q Consensus 118 ~~~~rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i 197 (885)
...++|||+|||+..+++.+|+..|..+|.|.+|.|-.+ .-+....||||.|.+...+-.|...+.+..|
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP----------~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP----------HIKTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccC----------CCCcccchhhhhhhccccCcccchhhcCCcc
Confidence 467899999999999999999999999999999988433 3456678999999999999999988888888
Q ss_pred cCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH
Q 002741 198 KGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK 277 (885)
Q Consensus 198 ~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ 277 (885)
....+.+..- .......+.++|++|+..+....|...|..||.|..|.+-. ...||||.|.+...|..|+..
T Consensus 439 ~~g~~r~glG--~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 439 GNGTHRIGLG--QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccCccccccc--ccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHH
Confidence 7665555322 11456678999999999999999999999999999876643 446999999999999999999
Q ss_pred hCCceeCC--eeEEEEeecCCC
Q 002741 278 FNGQKFGK--RPIAVDWAVPKN 297 (885)
Q Consensus 278 lng~~i~g--~~i~V~~a~~k~ 297 (885)
|-|..|++ +.|.|.|+.+..
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HhcCcCCCCCcccccccccCCC
Confidence 99999964 679999987553
No 129
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.50 E-value=1.2e-07 Score=95.76 Aligned_cols=160 Identities=13% Similarity=0.122 Sum_probs=119.0
Q ss_pred EEEcCCCccchHHH-H--HHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCe
Q 002741 124 VIIGGLLNADMAEE-V--HRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGG 200 (885)
Q Consensus 124 v~V~nLp~~~te~~-L--~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~ 200 (885)
.+++++-..+..+- | ...|+.+-......++.+ ..+...+++|+.|.....-.++-..-+++.+.-.
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~----------~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~ 168 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD----------RPQPIRPEAFESFKASDALLKAETEKEKKKIGKP 168 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhc----------CCCccCcccccCcchhhhhhhhccccccccccCc
Confidence 44555544433222 2 445555544444444333 3567789999999887777777666666666655
Q ss_pred eeeeccc------CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHH
Q 002741 201 TVWARQL------GGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (885)
Q Consensus 201 ~i~v~~~------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A 274 (885)
.++.... ..........+||.+.|..+++++.|-..|.+|-......++++..+|+++||+||.|.+..++..|
T Consensus 169 ~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rA 248 (290)
T KOG0226|consen 169 PVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRA 248 (290)
T ss_pred ceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHH
Confidence 4443211 1112456678999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEee
Q 002741 275 IQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 275 l~~lng~~i~g~~i~V~~a 293 (885)
+..|+|..++.++|.+.-+
T Consensus 249 mrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 249 MREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHhhcccccccchhHhhhh
Confidence 9999999999999998643
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.46 E-value=6.2e-07 Score=99.10 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=78.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 421 ~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
....+++|||.+|...+-..+|+.+|++||.|+-.+|+.+..+.-.++|+||++.+.++|.+||..|+ ...|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-----rTELHGr 475 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-----RTELHGR 475 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-----hhhhcce
Confidence 45678999999999999999999999999999999999888777789999999999999999999999 8999999
Q ss_pred EEEEEEccCh
Q 002741 501 QLTVLKALDK 510 (885)
Q Consensus 501 ~l~V~~a~~k 510 (885)
.|.|..+.+.
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999998763
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=4.8e-07 Score=95.42 Aligned_cols=79 Identities=27% Similarity=0.400 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
+..-++|||++|-..+++.+|+++|.+||.|.++.++.. +++|||.|.+.++|+.|....-. ...|+|..
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n----~lvI~G~R 294 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFN----KLVINGFR 294 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcc----eeeecceE
Confidence 344579999999999999999999999999999988654 56999999999999999877641 57889999
Q ss_pred EEEEEccCh
Q 002741 502 LTVLKALDK 510 (885)
Q Consensus 502 l~V~~a~~k 510 (885)
|.|.|+.++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999873
No 132
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.46 E-value=2.9e-07 Score=105.76 Aligned_cols=81 Identities=19% Similarity=0.402 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
..-++||||++|+..+++.+|..+|+.||.|.+|.++. ++|||||++....+|.+|+.+|+ ...+.++.
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~-----n~kv~~k~ 486 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLS-----NVKVADKT 486 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHh-----ccccccee
Confidence 34568999999999999999999999999999997653 48999999999999999999999 89999999
Q ss_pred EEEEEccChhhh
Q 002741 502 LTVLKALDKKLA 513 (885)
Q Consensus 502 l~V~~a~~k~~~ 513 (885)
|.|.||..+...
T Consensus 487 Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 487 IKIAWAVGKGPK 498 (894)
T ss_pred eEEeeeccCCcc
Confidence 999999987544
No 133
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.45 E-value=1.6e-07 Score=101.15 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=137.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-eeCCeeEEEEee
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-KFGKRPIAVDWA 293 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~-~i~g~~i~V~~a 293 (885)
...++|++++...+.+.++..++..+|.+..+.+........++|+++|.|...+.+..|+.. .+. .+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCccc
Confidence 457899999999999999999999999888777776666778999999999999999999984 553 445544444333
Q ss_pred cCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCC
Q 002741 294 VPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPS 373 (885)
Q Consensus 294 ~~k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~ 373 (885)
.....+.... .
T Consensus 166 ~~~~~~~~n~-------------------------------------------------------------~-------- 176 (285)
T KOG4210|consen 166 TRRGLRPKNK-------------------------------------------------------------L-------- 176 (285)
T ss_pred ccccccccch-------------------------------------------------------------h--------
Confidence 2111000000 0
Q ss_pred CCCchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCee
Q 002741 374 LSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVV 453 (885)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~ 453 (885)
....-....+..+|.+|++.+++++|+.+|..+|.|.
T Consensus 177 -------------------------------------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~ 213 (285)
T KOG4210|consen 177 -------------------------------------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEIT 213 (285)
T ss_pred -------------------------------------------cccccCccccceeecccccccchHHHhhhccCcCcce
Confidence 0000111123444999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccChh
Q 002741 454 SFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 454 ~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~k~ 511 (885)
.+++..++.++.+.|||||.|.....+..++.. . ...+.++++.+.+..+..
T Consensus 214 ~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 214 SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-Q-----TRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-c-----cCcccCcccccccCCCCc
Confidence 999999999999999999999999999999987 6 788999999999987653
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=5.3e-07 Score=95.14 Aligned_cols=77 Identities=30% Similarity=0.432 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHH-hCCceeCCeeEEEE
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQK-FNGQKFGKRPIAVD 291 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~-lng~~i~g~~i~V~ 291 (885)
.....+|||++|-..+++.+|+++|-+||+|.++.+.. ..++|||+|.+.+.|+.|..+ +|...|.|.+|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 34567999999999999999999999999999999987 457999999999999999886 45566799999999
Q ss_pred eecC
Q 002741 292 WAVP 295 (885)
Q Consensus 292 ~a~~ 295 (885)
|+.+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9987
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.43 E-value=3.8e-07 Score=104.76 Aligned_cols=78 Identities=27% Similarity=0.502 Sum_probs=72.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
-++||||++|+..+++.+|..+|+.||.|.+|.++. ++|||||......+|.+|+.+|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 368999999999999999999999999999999976 78999999999999999999999999999999999997
Q ss_pred CCCC
Q 002741 295 PKNI 298 (885)
Q Consensus 295 ~k~~ 298 (885)
-+..
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6543
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=5.5e-08 Score=96.02 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEE
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~ 291 (885)
.....++|||.|+...++|+-|.++|-+.|+|..|.|+... .+..+ ||||.|.++....-|+.-|||..+.+..|.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34456799999999999999999999999999999998765 44455 99999999999999999999999998888887
Q ss_pred ee
Q 002741 292 WA 293 (885)
Q Consensus 292 ~a 293 (885)
+-
T Consensus 83 ~r 84 (267)
T KOG4454|consen 83 LR 84 (267)
T ss_pred cc
Confidence 53
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.35 E-value=4.7e-07 Score=91.67 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=114.3
Q ss_pred eEEEcCCCCCCCHHH-H--HHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEE
Q 002741 427 TIFICNLPFDLDNEE-V--KQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 427 ~l~V~nLp~~~tee~-L--~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~ 503 (885)
.+++.++-.++..+- | ...|+.|-.+....++.+. -+.-++++|+.|.....-.++-..-+ ++.++-+.|.
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~-----~Kki~~~~VR 171 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKE-----KKKIGKPPVR 171 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccc-----cccccCccee
Confidence 445555544444333 2 5667777666666666654 35668899999988777666665555 5666666544
Q ss_pred EEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccceEEEc
Q 002741 504 VLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIY 583 (885)
Q Consensus 504 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~L~V~ 583 (885)
+.-+..-.... +. + -.....+||++
T Consensus 172 ~a~gtswedPs------------------l~-----------------------------------e--w~~~DfRIfcg 196 (290)
T KOG0226|consen 172 LAAGTSWEDPS------------------LA-----------------------------------E--WDEDDFRIFCG 196 (290)
T ss_pred eccccccCCcc------------------cc-----------------------------------c--Cccccceeecc
Confidence 43322110000 00 0 00012479999
Q ss_pred CCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCCCCCC
Q 002741 584 NLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGP 663 (885)
Q Consensus 584 NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~~~g~ 663 (885)
-|..+++++.|...|.+ |......++++|.+|| +++|||||.|.++.++..||+.|+|+ ..|
T Consensus 197 dlgNevnd~vl~raf~K---------fpsf~~akviRdkRTg------KSkgygfVSf~~pad~~rAmrem~gk--yVg- 258 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKK---------FPSFQKAKVIRDKRTG------KSKGYGFVSFRDPADYVRAMREMNGK--YVG- 258 (290)
T ss_pred cccccccHHHHHHHHHh---------ccchhhcccccccccc------ccccceeeeecCHHHHHHHHHhhccc--ccc-
Confidence 99999999999999996 8888899999999988 99999999999999999999999996 667
Q ss_pred CCceE
Q 002741 664 EHRPI 668 (885)
Q Consensus 664 ~~rli 668 (885)
.|+|
T Consensus 259 -srpi 262 (290)
T KOG0226|consen 259 -SRPI 262 (290)
T ss_pred -cchh
Confidence 6777
No 138
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=3.5e-07 Score=106.80 Aligned_cols=164 Identities=18% Similarity=0.193 Sum_probs=131.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC
Q 002741 420 GEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (885)
Q Consensus 420 ~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g 499 (885)
.+...+++||++||+..+++.+|+..|..||.|..|.|-... .+....||||.|.+...+-.|...+. +..|..
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s-----~~~I~~ 440 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEES-----GPLIGN 440 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhc-----CCcccc
Confidence 355667899999999999999999999999999998764432 34456799999999999999999988 777765
Q ss_pred eEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCCCCCcccce
Q 002741 500 RQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTR 579 (885)
Q Consensus 500 r~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p~~~~s~~~ 579 (885)
-.+.+.+..++ ....+.
T Consensus 441 g~~r~glG~~k---------------------------------------------------------------st~ttr 457 (975)
T KOG0112|consen 441 GTHRIGLGQPK---------------------------------------------------------------STPTTR 457 (975)
T ss_pred Ccccccccccc---------------------------------------------------------------ccccee
Confidence 55555553221 112468
Q ss_pred EEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCCC
Q 002741 580 LVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPK 659 (885)
Q Consensus 580 L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p~ 659 (885)
+++..|+.++....|...|.+ ||.|..|.+- +.--||+|.|.+...|+.|++.|.|.|
T Consensus 458 ~~sgglg~w~p~~~l~r~fd~---------fGpir~Idy~------------hgq~yayi~yes~~~aq~a~~~~rgap- 515 (975)
T KOG0112|consen 458 LQSGGLGPWSPVSRLNREFDR---------FGPIRIIDYR------------HGQPYAYIQYESPPAAQAATHDMRGAP- 515 (975)
T ss_pred eccCCCCCCChHHHHHHHhhc---------cCcceeeecc------------cCCcceeeecccCccchhhHHHHhcCc-
Confidence 999999999999999999996 9999876543 224599999999999999999999984
Q ss_pred CCCCCCceEEEEEcc
Q 002741 660 TFGPEHRPIVEFAVD 674 (885)
Q Consensus 660 ~~g~~~rliV~~A~e 674 (885)
+=++.+++.|.||.+
T Consensus 516 ~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 516 LGGPPRRLRVDLASP 530 (975)
T ss_pred CCCCCcccccccccC
Confidence 335567777999953
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.22 E-value=6.2e-06 Score=73.55 Aligned_cols=78 Identities=28% Similarity=0.435 Sum_probs=69.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC----CeeEEE
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG----KRPIAV 290 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~----g~~i~V 290 (885)
++|.|+|||...|.++|.+++.. .|....+.+|.|..++.+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988876 477888999999989999999999999999999999999999884 567788
Q ss_pred Eeec
Q 002741 291 DWAV 294 (885)
Q Consensus 291 ~~a~ 294 (885)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8874
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.21 E-value=3.5e-06 Score=87.51 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.....|+|.|||+.+++++|+++|..||.+..+.|-.++ .|.+.|.|-|.|...++|..|++.++|..++|++|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344789999999999999999999999999888888765 7889999999999999999999999999999999999887
Q ss_pred cCCCC
Q 002741 294 VPKNI 298 (885)
Q Consensus 294 ~~k~~ 298 (885)
.+...
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 66543
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.17 E-value=4.8e-06 Score=86.52 Aligned_cols=82 Identities=23% Similarity=0.406 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEE
Q 002741 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVL 505 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~ 505 (885)
..|+|.|||+.+++++|+++|..||.+..+.+.+++ .|.+.|+|-|.|...++|..|++.++ +..++|+.+.+.
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~-----gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYN-----GVALDGRPMKIE 157 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhc-----CcccCCceeeeE
Confidence 689999999999999999999999998888777765 78899999999999999999999999 999999999999
Q ss_pred EccChhhh
Q 002741 506 KALDKKLA 513 (885)
Q Consensus 506 ~a~~k~~~ 513 (885)
...+....
T Consensus 158 ~i~~~~~~ 165 (243)
T KOG0533|consen 158 IISSPSQS 165 (243)
T ss_pred EecCcccc
Confidence 87765444
No 142
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.15 E-value=1.6e-06 Score=92.44 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=63.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCC---CCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT---GLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
.|.|.||.+.+|.++++.+|..+|.|..+.|+.+..+ ......|||.|.+...+..|-. |.++.|-++.|.|..+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 8999999999999999999999999999988764322 2356789999999999998877 7888888888887755
No 143
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.14 E-value=3.8e-06 Score=93.00 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 214 TQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
...++|||.+|...+-..+|+.+|++||.|....|+.+..+--.+.|+||++.+.++|.+||..|+.+.|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34679999999999999999999999999999999988766567899999999999999999999999999999999987
Q ss_pred cCC
Q 002741 294 VPK 296 (885)
Q Consensus 294 ~~k 296 (885)
...
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 644
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.05 E-value=1.1e-05 Score=92.20 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeee
Q 002741 421 EDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV---TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (885)
Q Consensus 421 ~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~---~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l 497 (885)
..+..++|||+||++.++++.|...|..||+|.+++|+..+. ..+.+.||||.|.+..+|++|++.|+ |..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lq-----g~iv 244 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQ-----GIIV 244 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhc-----ceee
Confidence 356678999999999999999999999999999999876552 34578899999999999999999999 9999
Q ss_pred cCeEEEEEEcc
Q 002741 498 KGRQLTVLKAL 508 (885)
Q Consensus 498 ~gr~l~V~~a~ 508 (885)
.+..+.+.|+.
T Consensus 245 ~~~e~K~gWgk 255 (877)
T KOG0151|consen 245 MEYEMKLGWGK 255 (877)
T ss_pred eeeeeeecccc
Confidence 99999999984
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.03 E-value=8.2e-06 Score=91.46 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEE
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQL 502 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l 502 (885)
....+|||+|||++++..+|+++|..||.|....|......+...+||||+|.+.+++..||.+- -..|+|++|
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As------p~~ig~~kl 359 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS------PLEIGGRKL 359 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC------ccccCCeeE
Confidence 34456999999999999999999999999999877665433444499999999999999999775 488999999
Q ss_pred EEEEccC
Q 002741 503 TVLKALD 509 (885)
Q Consensus 503 ~V~~a~~ 509 (885)
.|.-..+
T Consensus 360 ~Veek~~ 366 (419)
T KOG0116|consen 360 NVEEKRP 366 (419)
T ss_pred EEEeccc
Confidence 9997554
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.97 E-value=3.5e-06 Score=89.95 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=114.3
Q ss_pred cEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCee
Q 002741 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (885)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (885)
..|.|.||.+.++.++++.+|..+|.|..+.|+..- ....-......|||.|.+...+..|.. |.++.+-+..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~------~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdra 80 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNV------DDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRA 80 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCC------CCccCcceeeeEEEeccCCcceeHHhh-hccceeeeee
Confidence 378999999999999999999999999999985431 111223456789999999999988754 6666666666
Q ss_pred eeecccCCCCC--------------------------------------------------------CCCCcEEEEcCCC
Q 002741 202 VWARQLGGEGS--------------------------------------------------------KTQKWKLIIRNIP 225 (885)
Q Consensus 202 i~v~~~~~~~~--------------------------------------------------------~~~~~~l~V~nLp 225 (885)
|.|.++..... ..-..+|+|.+|+
T Consensus 81 liv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~ 160 (479)
T KOG4676|consen 81 LIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLI 160 (479)
T ss_pred EEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcch
Confidence 65543221000 0012579999999
Q ss_pred CCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 002741 226 FKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (885)
Q Consensus 226 ~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~ 284 (885)
..+...++.+.|..+|.|....+.. +....+|.|.|........|+. ++|..+.
T Consensus 161 ~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 161 SAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999999999998776643 3356688899999999999998 5777665
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.97 E-value=1.1e-05 Score=84.12 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
......+||+|+.+.+|.+++..+|+.||.|..+.|+.+...|.++|||||+|.+.+.+..|+. |+|..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4456799999999999999999999999999999999999888999999999999999999999 999999999999988
Q ss_pred ec
Q 002741 293 AV 294 (885)
Q Consensus 293 a~ 294 (885)
..
T Consensus 177 ~r 178 (231)
T KOG4209|consen 177 KR 178 (231)
T ss_pred ee
Confidence 64
No 148
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.97 E-value=1e-05 Score=92.31 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccC---CCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEE
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT---DTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIA 289 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~---~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~ 289 (885)
.+..++|||+||++.++++.|...|..||+|.+|+|+... +....+.+|||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999987643 2345677999999999999999999999999999999
Q ss_pred EEeecC
Q 002741 290 VDWAVP 295 (885)
Q Consensus 290 V~~a~~ 295 (885)
+-|+.+
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999843
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.89 E-value=1.6e-05 Score=89.28 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeecCC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~~k 296 (885)
..|||+|||.+++..+|.++|..||.|....|......+....||||+|.+.+++..||.+ +-..|+++.+.|+--.+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999988876543455559999999999999999996 777889999999875443
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=2e-06 Score=92.43 Aligned_cols=150 Identities=20% Similarity=0.266 Sum_probs=119.8
Q ss_pred EEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCc-eecCee
Q 002741 123 TVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK-EIKGGT 201 (885)
Q Consensus 123 tv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~-~i~g~~ 201 (885)
.+|+|||.+.++.++|..+|... .++..+..+ ...|||||.+.+...|.+|++.++++ .+.|+.
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 47999999999999999999866 333332221 23589999999999999999999885 678888
Q ss_pred eeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcc-cCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 002741 202 VWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPH-NTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (885)
Q Consensus 202 i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~-~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (885)
+.+...-. .....+.+-|+|+|+....+-|..++..||.+..|.... +. ..-..-|+|...+.+..||..|+|
T Consensus 68 ~e~~~sv~--kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~----etavvnvty~~~~~~~~ai~kl~g 141 (584)
T KOG2193|consen 68 QEVEHSVP--KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS----ETAVVNVTYSAQQQHRQAIHKLNG 141 (584)
T ss_pred eeccchhh--HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch----HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 87754322 334456799999999999999999999999999886632 22 222345789999999999999999
Q ss_pred ceeCCeeEEEEee
Q 002741 281 QKFGKRPIAVDWA 293 (885)
Q Consensus 281 ~~i~g~~i~V~~a 293 (885)
..+....+.|.|-
T Consensus 142 ~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 142 PQLENQHLKVGYI 154 (584)
T ss_pred hHhhhhhhhcccC
Confidence 9999999999886
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.73 E-value=3.1e-06 Score=90.99 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=121.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-eeCCeeEEEEeecC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-KFGKRPIAVDWAVP 295 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~-~i~g~~i~V~~a~~ 295 (885)
..+|++||.+.++..+|..+|...-.-.+-.++. ..|||||.+.+...|.+|++.++|. .+.|.++.|.++.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 3689999999999999999998742111111111 4589999999999999999999987 47899999988766
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccCCCCCCCchhHHHHHHHHhhhcccCCCCCCCCC
Q 002741 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (885)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~~p~~~ 375 (885)
+..+
T Consensus 76 kkqr---------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 76 KKQR---------------------------------------------------------------------------- 79 (584)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5421
Q ss_pred CchhhccCCCCCCcchhhhhhcccccccccccCCCCCCCccccCCCCCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEE
Q 002741 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~k~~~~~~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
.+.+-|+|+|+....+-|..+...||.+..|
T Consensus 80 -------------------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~ 110 (584)
T KOG2193|consen 80 -------------------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENC 110 (584)
T ss_pred -------------------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHh
Confidence 1468899999999999999999999999998
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccC
Q 002741 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (885)
Q Consensus 456 ~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (885)
..+. +....-..-|.|.+.+.+..||..++ |..|....+.|.|-..
T Consensus 111 eqvn---t~~etavvnvty~~~~~~~~ai~kl~-----g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 111 EQVN---TDSETAVVNVTYSAQQQHRQAIHKLN-----GPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhc---cchHHHHHHHHHHHHHHHHHHHHhhc-----chHhhhhhhhcccCch
Confidence 6532 22222233478999999999999999 9999999999998654
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.66 E-value=5.5e-05 Score=78.95 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
.+.+||+|+.+.+|.+++...|..||.|..+.+..+...+.++||+||+|.+.+.+..|+. |+ +..|.|+.+.|
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~-----gs~i~~~~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LD-----GSEIPGPAIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cC-----Cccccccccee
Confidence 3689999999999999999999999999999999999998999999999999999999998 99 99999999999
Q ss_pred EEccC
Q 002741 505 LKALD 509 (885)
Q Consensus 505 ~~a~~ 509 (885)
.+..-
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 98653
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.60 E-value=0.00029 Score=60.01 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=47.3
Q ss_pred ceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCC
Q 002741 578 TRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNN 657 (885)
Q Consensus 578 ~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~ 657 (885)
+.|+|.|||...+...|+.-+....-.| -|.|..| +.|.|+|.|.+++.|.+|..-|+|-
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNC----GGkVl~v----------------~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNC----GGKVLSV----------------SGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTT----T--EEE------------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhcc----CCEEEEE----------------eCCEEEEEeCCHHHHHHHHHhhccc
Confidence 4699999999988766655554432222 3445544 2578999999999999999999997
Q ss_pred CCCCCCCCceEEEEEcc
Q 002741 658 PKTFGPEHRPIVEFAVD 674 (885)
Q Consensus 658 p~~~g~~~rliV~~A~e 674 (885)
.+|| +++.|.|...
T Consensus 63 -dVfG--~kI~v~~~~~ 76 (90)
T PF11608_consen 63 -DVFG--NKISVSFSPK 76 (90)
T ss_dssp --SSS--S--EEESS--
T ss_pred -cccc--ceEEEEEcCC
Confidence 8999 8999999843
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.52 E-value=0.00017 Score=65.94 Aligned_cols=76 Identities=28% Similarity=0.347 Sum_probs=48.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
++.|+|.+++..++.++|+++|+.||.|.+|.+... ...|||.|.+.++|..|+..+....+.+..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 357999999999999999999999999999876432 44799999999999999999985444456777777666
Q ss_pred EE
Q 002741 505 LK 506 (885)
Q Consensus 505 ~~ 506 (885)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 65
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.48 E-value=0.00028 Score=60.05 Aligned_cols=68 Identities=28% Similarity=0.391 Sum_probs=47.3
Q ss_pred CeEEEcCCCCCCCHHHHH----HHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 426 NTIFICNLPFDLDNEEVK----QRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~----~~F~~fG-~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
..|+|.|||.+.+...|+ .++..+| .|..| ..+.|+|.|.+.+.|.+|.+.|+ |-.+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRme-----gEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRME-----GEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHT-----T--SSSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhc-----ccccccc
Confidence 479999999999876654 5555665 56555 25789999999999999999999 9999999
Q ss_pred EEEEEEcc
Q 002741 501 QLTVLKAL 508 (885)
Q Consensus 501 ~l~V~~a~ 508 (885)
.|.|.|..
T Consensus 68 kI~v~~~~ 75 (90)
T PF11608_consen 68 KISVSFSP 75 (90)
T ss_dssp --EEESS-
T ss_pred eEEEEEcC
Confidence 99999964
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.01 E-value=0.0014 Score=59.89 Aligned_cols=70 Identities=20% Similarity=0.295 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCc-----eeCCeeEEEE
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQ-----KFGKRPIAVD 291 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~-----~i~g~~i~V~ 291 (885)
+.|+|.+++..++-++|+++|+.||.|..|.+.. ....|||.|.+++.|+.|+..+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC------CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4789999999999999999999999999888865 2346999999999999999976433 4566555554
Q ss_pred e
Q 002741 292 W 292 (885)
Q Consensus 292 ~ 292 (885)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.85 E-value=0.00098 Score=71.66 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCe
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVS--------FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGI 495 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~--------v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~ 495 (885)
...+|||-+||..+++.+|.++|.++|.|.. |.|..+++|+.+++-|.|.|.+...|+.|+.-++ +.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~a-----gk 139 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFA-----GK 139 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhc-----cc
Confidence 3468999999999999999999999998743 6677888999999999999999999999999999 99
Q ss_pred eecCeEEEEEEccCh
Q 002741 496 FLKGRQLTVLKALDK 510 (885)
Q Consensus 496 ~l~gr~l~V~~a~~k 510 (885)
.+.|.+|.|.+|..+
T Consensus 140 df~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERR 154 (351)
T ss_pred cccCCCchhhhhhhc
Confidence 999999999998754
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.001 Score=71.53 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVW--------NVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~ 284 (885)
.....+|||-+||..+++++|.++|.++|.|. .|.|.++.+|+..++-|.|.|.+...|..|+.-+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45567999999999999999999999999873 4667788899999999999999999999999999999999
Q ss_pred CeeEEEEeecCCC
Q 002741 285 KRPIAVDWAVPKN 297 (885)
Q Consensus 285 g~~i~V~~a~~k~ 297 (885)
+.+|.|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999998886544
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.82 E-value=0.0024 Score=67.40 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=62.7
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHHhccCCeeEEEEeecCC-CCCcceE--EEEEeCCHHHHHHHHHHhccCCCCCe
Q 002741 425 QNTIFICNLPFDLDNEEV------KQRFSAFGEVVSFVPVLHQV-TKRPKGT--GFLKFKTVEAATAAVSASKTTSGLGI 495 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L------~~~F~~fG~I~~v~i~~~~~-~~~~~g~--aFV~F~~~e~A~~Al~~ln~~~~~g~ 495 (885)
..-+||-+||+.+..+++ .++|.+||.|..|.|-.... .....+. .||.|.+.++|.+||.+.+ |.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vD-----gs 188 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD-----GS 188 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhc-----cc
Confidence 357899999999877763 48999999999985433221 1111222 3999999999999999999 99
Q ss_pred eecCeEEEEEEccCh
Q 002741 496 FLKGRQLTVLKALDK 510 (885)
Q Consensus 496 ~l~gr~l~V~~a~~k 510 (885)
.++||.|...|...+
T Consensus 189 ~~DGr~lkatYGTTK 203 (480)
T COG5175 189 LLDGRVLKATYGTTK 203 (480)
T ss_pred cccCceEeeecCchH
Confidence 999999999997654
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.80 E-value=0.0024 Score=67.42 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHhhcCCCCeeEEEEcccCCC-CCceeEE--EEEecCHHHHHHHHHHhCCceeCC
Q 002741 215 QKWKLIIRNIPFKAKVNEI------KDMFSPVGLVWNVYIPHNTDT-GLSKGFA--FVKFTCKRDAESAIQKFNGQKFGK 285 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L------~~~F~~~G~I~~v~i~~~~~~-g~~~g~a--fV~F~~~e~A~~Al~~lng~~i~g 285 (885)
...-+||-+||+.+-.+++ .++|.+||.|..|.|-+.... ....+.+ ||.|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4467999999998876662 479999999999888654311 1222333 999999999999999999999999
Q ss_pred eeEEEEeecCC
Q 002741 286 RPIAVDWAVPK 296 (885)
Q Consensus 286 ~~i~V~~a~~k 296 (885)
+.|+..|..-+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999987654
No 161
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.55 E-value=0.0093 Score=67.72 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=70.7
Q ss_pred hhhccCCCCCCcccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCC
Q 002741 564 KMTKLQSPNFHVSRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTE 643 (885)
Q Consensus 564 ~~~~~~~p~~~~s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s 643 (885)
.....++|.-+..+..|||.||=.-+|.-+|+.|+.+ -.|.|... +| | +-+--|||.|.+
T Consensus 431 ~~~RvpSPsR~~~SnvlhI~nLvRPFTlgQLkelL~r--------tgg~Vee~-Wm-D----------kIKShCyV~yss 490 (718)
T KOG2416|consen 431 PKERVPSPSRKEPSNVLHIDNLVRPFTLGQLKELLGR--------TGGNVEEF-WM-D----------KIKSHCYVSYSS 490 (718)
T ss_pred ccccCCCCCCCCccceEeeecccccchHHHHHHHHhh--------ccCchHHH-HH-H----------HhhcceeEeccc
Confidence 4445667777777889999999777788999999997 46777766 44 2 235679999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCceEEEEEccc
Q 002741 644 HQHALVALRVLNNNPKTFGPEHRPIVEFAVDN 675 (885)
Q Consensus 644 ~e~A~~Al~~lng~p~~~g~~~rliV~~A~e~ 675 (885)
.++|.+.+.+|||-.-.-+..++|++.|+.++
T Consensus 491 ~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 491 VEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred HHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 99999999999995111244588999999643
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.46 E-value=0.008 Score=67.80 Aligned_cols=79 Identities=24% Similarity=0.500 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCCCCC------HHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-CCe
Q 002741 214 TQKWKLIIRNIPFKAK------VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF-GKR 286 (885)
Q Consensus 214 ~~~~~l~V~nLp~~~t------e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i-~g~ 286 (885)
.-...|+|-|+|---. ..-|..+|+++|.|..+.++.+.++| ++||.|++|.+..+|..|++.|||..| ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 3456899999985322 23456799999999999999887766 999999999999999999999999998 466
Q ss_pred eEEEEee
Q 002741 287 PIAVDWA 293 (885)
Q Consensus 287 ~i~V~~a 293 (885)
++.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777543
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.39 E-value=0.0065 Score=62.49 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEE
Q 002741 427 TIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLK 506 (885)
Q Consensus 427 ~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~ 506 (885)
.|||.||+..+..+.|..-|+.||.|....++.|. .++..+-++|.|...-.|.+|+..++. .+.+....+++..|..
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~-~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE-GGFGGTTGGRPVGVEP 110 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc-CccccCCCCCccCCCh
Confidence 69999999999999999999999999987666663 678889999999999999999998862 2223455677776665
Q ss_pred c
Q 002741 507 A 507 (885)
Q Consensus 507 a 507 (885)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.32 E-value=0.0063 Score=48.23 Aligned_cols=52 Identities=23% Similarity=0.561 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHH
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAI 275 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al 275 (885)
+.|-|.+.|.... +.|..+|..||.|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4688999987766 45566999999999988863 3458999999999999985
No 165
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.19 E-value=0.013 Score=46.36 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.6
Q ss_pred cEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHH
Q 002741 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASV 189 (885)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai 189 (885)
+.|-|.+.+++..+ .++..|..||+|..+.+. ......||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---------------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---------------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---------------CCCcEEEEEECCHHHHHhhC
Confidence 57889999877665 566689999999999883 23468999999999999985
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.07 E-value=0.0095 Score=61.31 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=81.1
Q ss_pred HHHHHHHHhCCceecCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEE
Q 002741 184 SACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFV 263 (885)
Q Consensus 184 ~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV 263 (885)
-|..|-..|++....|+.+.|+... . ..|||.||...+.-+.|...|+.||+|....+..| ..++..+-++|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~------~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v 77 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM------H-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIV 77 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec------c-ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchh
Confidence 4667777899999999999987532 2 68999999999999999999999999998777665 36778899999
Q ss_pred EecCHHHHHHHHHHhCCcee----CCeeEEEE
Q 002741 264 KFTCKRDAESAIQKFNGQKF----GKRPIAVD 291 (885)
Q Consensus 264 ~F~~~e~A~~Al~~lng~~i----~g~~i~V~ 291 (885)
.|...-.|.+|+..++-.-| .+++.-|.
T Consensus 78 ~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999999997643333 45555554
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.024 Score=64.14 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCC------HHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCee
Q 002741 423 ELQNTIFICNLPFDLD------NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIF 496 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~t------ee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~ 496 (885)
....+|+|-|+|.--. ..-|..+|+++|.|+...++.+..+| ++||.|++|.+..+|..|++.|| |+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~-----G~~ 129 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLN-----GKR 129 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcc-----cce
Confidence 4557999999985322 23456899999999999888887655 89999999999999999999999 888
Q ss_pred ec-CeEEEEEEcc
Q 002741 497 LK-GRQLTVLKAL 508 (885)
Q Consensus 497 l~-gr~l~V~~a~ 508 (885)
|+ ++++.|..-.
T Consensus 130 ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 130 LDKNHTFFVRLFK 142 (698)
T ss_pred ecccceEEeehhh
Confidence 85 6777776543
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.06 E-value=0.0038 Score=64.06 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=61.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCC--------CCcee----EEEEEecCHHHHHHHHHHhCCce
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDT--------GLSKG----FAFVKFTCKRDAESAIQKFNGQK 282 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--------g~~~g----~afV~F~~~e~A~~Al~~lng~~ 282 (885)
....||+++||+.+...-|+++|+.||.|-.|.+-....+ |.+.+ -|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999998765443 22222 37899999999999999999999
Q ss_pred eCCee
Q 002741 283 FGKRP 287 (885)
Q Consensus 283 i~g~~ 287 (885)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.84 E-value=0.022 Score=51.34 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCC-------CCCceeEEEEEecCHHHHHHHHHHhCCceeCCee
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTD-------TGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP 287 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-------~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~ 287 (885)
....|.|=+.|+. ....|..+|++||.|.+..-..... ......+..|.|.++.+|.+||.. ||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3457888889888 5577889999999998765111000 011445899999999999999995 999998865
Q ss_pred -EEEEee
Q 002741 288 -IAVDWA 293 (885)
Q Consensus 288 -i~V~~a 293 (885)
+-|.|+
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 446665
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.82 E-value=0.0092 Score=65.41 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeec---CCCCC----------cceEEEEEeCCHHHHHHHHHHhc
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLH---QVTKR----------PKGTGFLKFKTVEAATAAVSASK 488 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~---~~~~~----------~~g~aFV~F~~~e~A~~Al~~ln 488 (885)
-++++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +.+.+ .+-+|||+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46789999999999999999999999999999998765 32221 25689999999999999999997
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.80 E-value=0.0057 Score=62.85 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=59.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhccCCCC
Q 002741 426 NTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVT--------KRPKG----TGFLKFKTVEAATAAVSASKTTSGL 493 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~--------~~~~g----~aFV~F~~~e~A~~Al~~ln~~~~~ 493 (885)
-.||+.+||+.....-|+++|+.||.|-.|.+-....+ |.+.. -|.|+|.+...|..+...||
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln----- 149 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN----- 149 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC-----
Confidence 58999999999999999999999999999987665544 22222 37899999999999999999
Q ss_pred CeeecCeE
Q 002741 494 GIFLKGRQ 501 (885)
Q Consensus 494 g~~l~gr~ 501 (885)
+..|+|+.
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 88888764
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.59 E-value=0.056 Score=46.39 Aligned_cols=60 Identities=22% Similarity=0.395 Sum_probs=45.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNG 280 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng 280 (885)
.+......+|+ +|..+...||.++|+.||.|. |..+.+. -|||.....+.|..|+..+..
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34455677777 999999999999999999987 6666542 499999999999999998764
No 173
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.44 E-value=0.038 Score=57.76 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=59.7
Q ss_pred CeEEEcCC--CCCCC---HHHHHHHHhccCCeeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC
Q 002741 426 NTIFICNL--PFDLD---NEEVKQRFSAFGEVVSFVPVLHQVTKRP-KGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (885)
Q Consensus 426 ~~l~V~nL--p~~~t---ee~L~~~F~~fG~I~~v~i~~~~~~~~~-~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g 499 (885)
+.|.++|+ +-.++ ++++.+.+.+||.|..|.|...+..... .--.||+|...++|.+|+-.|| |.+|+|
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdln-----GRyFGG 356 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLN-----GRYFGG 356 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcC-----Cceecc
Confidence 34566665 23333 5678889999999999977766532211 2247999999999999999999 999999
Q ss_pred eEEEEEEcc
Q 002741 500 RQLTVLKAL 508 (885)
Q Consensus 500 r~l~V~~a~ 508 (885)
|.+...|..
T Consensus 357 r~v~A~Fyn 365 (378)
T KOG1996|consen 357 RVVSACFYN 365 (378)
T ss_pred eeeeheecc
Confidence 999999864
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.43 E-value=0.012 Score=62.55 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCC--eeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGL--VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~--I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
...++||+||-|.+|+++|.+.+...|. +..+++..+..+|.++|||+|...+....+.-++.|-.+.|.|..-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3458999999999999999999988775 67778888888999999999999999999999999999999887666643
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.25 E-value=0.083 Score=47.71 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeee
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQ-------VTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFL 497 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~-------~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l 497 (885)
.+.|.|-++|+. ....|...|+.||.|....-+... .......+..|.|.++.+|.+|| .-| |..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~N-----G~i~ 78 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKN-----GTIF 78 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTT-----TEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhC-----CeEE
Confidence 367999999988 556788899999999876411000 00123568899999999999999 557 8999
Q ss_pred cCeEE-EEEEcc
Q 002741 498 KGRQL-TVLKAL 508 (885)
Q Consensus 498 ~gr~l-~V~~a~ 508 (885)
.|..+ -|.++.
T Consensus 79 ~g~~mvGV~~~~ 90 (100)
T PF05172_consen 79 SGSLMVGVKPCD 90 (100)
T ss_dssp TTCEEEEEEE-H
T ss_pred cCcEEEEEEEcH
Confidence 88655 466653
No 176
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.20 E-value=0.02 Score=60.99 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=63.1
Q ss_pred CcEEEEcCCCccchHHHHHHHHhcCC--CeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceec
Q 002741 121 ARTVIIGGLLNADMAEEVHRLAGSIG--TVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIK 198 (885)
Q Consensus 121 ~rtv~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~ 198 (885)
--++|||||-+.+|.+||.+.+...| .+.+++++.+ ...|.++|||+|...+..+.++-++.|-.+.|+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN---------R~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN---------RTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc---------ccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 45789999999999999999999888 4666666433 257999999999999999999999999999998
Q ss_pred Ceeeee
Q 002741 199 GGTVWA 204 (885)
Q Consensus 199 g~~i~v 204 (885)
|..-.|
T Consensus 151 GQ~P~V 156 (498)
T KOG4849|consen 151 GQSPTV 156 (498)
T ss_pred CCCCee
Confidence 875544
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.02 E-value=0.045 Score=57.21 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCCCeeEEEEcccCCCCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 230 VNEIKDMFSPVGLVWNVYIPHNTDTGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 230 e~~L~~~F~~~G~I~~v~i~~~~~~g~-~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
++++.+.+++||.|..|.|...+..-. -.--.||+|...++|.+|+-.|||..|+|+.+..+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 567888999999999998876542211 12247999999999999999999999999999998864
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.01 E-value=0.0099 Score=61.34 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=51.7
Q ss_pred HHHHHhhc-CCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 231 NEIKDMFS-PVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 231 ~~L~~~F~-~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
++|...|+ +||+|..+.|..+. .-.-.|-+||.|...++|++|+..||+..|.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55565666 79999988776543 2236788999999999999999999999999999999987
No 179
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.72 E-value=0.038 Score=60.79 Aligned_cols=69 Identities=25% Similarity=0.310 Sum_probs=56.9
Q ss_pred ccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeec---ccCCccCCCCCc--------ceEEEEEeCCH
Q 002741 576 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQS---LKKGKVDTKHYS--------RGVAFVEFTEH 644 (885)
Q Consensus 576 s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d---~~~~~~~~~~~s--------kG~aFV~F~s~ 644 (885)
++.+|.+.|||.+-.-+.|.++|. .+|.|..|+|+.- +..+ .+.+ +-+|||+|.+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg---------~~G~IksIRIckPgaip~d~----r~~~~~~~~~~tk~~AlvEye~~ 296 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFG---------TVGSIKSIRICKPGAIPEDV----RGFPKKYFELQTKECALVEYEEV 296 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhh---------cccceeeeeecCCCCCCccc----ccCCccchhhhhhhhhhhhhhhh
Confidence 467899999999988899999999 5999999999965 3222 2222 34899999999
Q ss_pred HHHHHHHHHhcCC
Q 002741 645 QHALVALRVLNNN 657 (885)
Q Consensus 645 e~A~~Al~~lng~ 657 (885)
+.|.+|.+.||..
T Consensus 297 ~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 297 EAARKARELLNPE 309 (484)
T ss_pred HHHHHHHHhhchh
Confidence 9999999999764
No 180
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.60 E-value=0.034 Score=63.39 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=64.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---CCee
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSP-VGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF---GKRP 287 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i---~g~~ 287 (885)
.....+.|||.||-.-+|.-+|+.++.. .|.|....|-+ -+..|||.|.+.++|.+.+.+|||..+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445689999999999999999999995 66666653322 556899999999999999999999988 6778
Q ss_pred EEEEeecCC
Q 002741 288 IAVDWAVPK 296 (885)
Q Consensus 288 i~V~~a~~k 296 (885)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888887543
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.29 E-value=0.19 Score=48.22 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCC-----CCCH----HHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 002741 214 TQKWKLIIRNIPF-----KAKV----NEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (885)
Q Consensus 214 ~~~~~l~V~nLp~-----~~te----~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~ 284 (885)
+...+|.|.=+.+ ..-. .+|.+.|..||.+.-|++..+ .-+|.|.+.+.|-+|+. |+|..++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 3445666665541 1222 367788999999887777653 48999999999999998 8999999
Q ss_pred CeeEEEEeecCC
Q 002741 285 KRPIAVDWAVPK 296 (885)
Q Consensus 285 g~~i~V~~a~~k 296 (885)
|+.|.|..-.|.
T Consensus 96 g~~l~i~LKtpd 107 (146)
T PF08952_consen 96 GRTLKIRLKTPD 107 (146)
T ss_dssp TEEEEEEE----
T ss_pred CEEEEEEeCCcc
Confidence 999999986554
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.13 E-value=0.14 Score=51.54 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcC-CCCe---eEEE--EcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC---C
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSP-VGLV---WNVY--IPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG---K 285 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~I---~~v~--i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~---g 285 (885)
....|.|++||+++|++++.+.++. ++.. ..+. ............-|||.|.+.+++...+..++|..|. |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4569999999999999999998887 7765 2332 2211111123456999999999999999999998882 2
Q ss_pred --eeEEEEeec
Q 002741 286 --RPIAVDWAV 294 (885)
Q Consensus 286 --~~i~V~~a~ 294 (885)
.+..|++|.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 356677773
No 183
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.81 E-value=0.032 Score=57.75 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHHh-ccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEcc
Q 002741 440 EEVKQRFS-AFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKAL 508 (885)
Q Consensus 440 e~L~~~F~-~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~ 508 (885)
++|...|+ +||.|+.+.|..+. ...-.|-++|.|...++|++|+..|| +..|.|++|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~ln-----nRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLN-----NRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHc-----CccccCCcceeeecC
Confidence 45555565 89999998654332 33457889999999999999999999 999999999999863
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.62 E-value=0.28 Score=47.07 Aligned_cols=73 Identities=26% Similarity=0.314 Sum_probs=51.5
Q ss_pred CCCCeEEEcCCC-----CCCCH----HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCC
Q 002741 423 ELQNTIFICNLP-----FDLDN----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGL 493 (885)
Q Consensus 423 ~~~~~l~V~nLp-----~~~te----e~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~ 493 (885)
++..||.|.=+. ...-. .+|.+.|..||.+.-++++- +.-+|.|.+-+.|.+|+ .++
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaal-s~d----- 90 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAAL-SLD----- 90 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHH-HGC-----
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHH-ccC-----
Confidence 344577776554 11222 36778899999988887763 35799999999999998 678
Q ss_pred CeeecCeEEEEEEccC
Q 002741 494 GIFLKGRQLTVLKALD 509 (885)
Q Consensus 494 g~~l~gr~l~V~~a~~ 509 (885)
|..++|+.|.|....+
T Consensus 91 g~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 91 GIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CSEETTEEEEEEE---
T ss_pred CcEECCEEEEEEeCCc
Confidence 9999999999998654
No 185
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.33 E-value=0.29 Score=46.20 Aligned_cols=71 Identities=27% Similarity=0.284 Sum_probs=54.1
Q ss_pred CCeEEEcCCCCCC----CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 425 QNTIFICNLPFDL----DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 425 ~~~l~V~nLp~~~----tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
-.+|.|+=|..++ +-..|...++.||+|.+|.+. .+..|.|.|.+..+|-+|+.++. ....|.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~------s~~pgt 152 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQ------SRAPGT 152 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhc------CCCCCc
Confidence 3578887665554 334455567789999998653 35579999999999999999997 466788
Q ss_pred EEEEEEcc
Q 002741 501 QLTVLKAL 508 (885)
Q Consensus 501 ~l~V~~a~ 508 (885)
.+.+.|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 89998854
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.21 E-value=0.63 Score=38.00 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=43.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhcc---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 002741 426 NTIFICNLPFDLDNEEVKQRFSAF---GEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSAS 487 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~~~F~~f---G~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~l 487 (885)
..|+|+|+. +++.++|+.+|..| .....|..+-|. .|=|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 379999996 68889999999998 124566666553 4789999999999999765
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.31 E-value=1 Score=42.63 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=55.3
Q ss_pred ccceEEEcCCCcccC-HHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 002741 576 SRTRLVIYNLPKSMT-EKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVL 654 (885)
Q Consensus 576 s~~~L~V~NLP~~vt-e~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~l 654 (885)
+..+|.|+=|..++. .++|+.+..+.. .||.|.+|.+. .+-.|.|.|.+..+|-.|+.++
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls------~fGpI~SVT~c-------------GrqsavVvF~d~~SAC~Av~Af 145 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLS------VFGPIQSVTLC-------------GRQSAVVVFKDITSACKAVSAF 145 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHH------hcCCcceeeec-------------CCceEEEEehhhHHHHHHHHhh
Confidence 356888887766653 466666665532 69999999776 3668999999999999999999
Q ss_pred cCCCCCCCCCCceEEEEE
Q 002741 655 NNNPKTFGPEHRPIVEFA 672 (885)
Q Consensus 655 ng~p~~~g~~~rliV~~A 672 (885)
+.. . ++..+.+.|-
T Consensus 146 ~s~--~--pgtm~qCsWq 159 (166)
T PF15023_consen 146 QSR--A--PGTMFQCSWQ 159 (166)
T ss_pred cCC--C--CCceEEeecc
Confidence 985 3 3366667775
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.91 E-value=0.29 Score=49.24 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhc-cCCe---eEEEEeecCC-CC-CcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSA-FGEV---VSFVPVLHQV-TK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~-fG~I---~~v~i~~~~~-~~-~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~ 498 (885)
...|.|++||+++|++++.+.+++ ++.. .++.-..... .. ....-|||.|.+.+++...+..++ |+.|-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~-----g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFD-----GHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCT-----TEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcC-----CcEEE
Confidence 468999999999999999998877 6665 3332112221 11 124459999999999999999999 77663
Q ss_pred C-----eEEEEEEccC
Q 002741 499 G-----RQLTVLKALD 509 (885)
Q Consensus 499 g-----r~l~V~~a~~ 509 (885)
+ ....|.+|.-
T Consensus 82 D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 82 DSKGNEYPAVVEFAPY 97 (176)
T ss_dssp -TTS-EEEEEEEE-SS
T ss_pred CCCCCCcceeEEEcch
Confidence 2 2456666643
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.54 E-value=0.64 Score=40.06 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=43.4
Q ss_pred cceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002741 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (885)
Q Consensus 577 ~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng 656 (885)
+.-+|--..|..+-..||.++|+ +||.|. |..+-| ..|||.....+.|..|+..+.-
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFs---------pfG~I~-VsWi~d-------------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFS---------PFGQIY-VSWIND-------------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCC---------CCCCEE-EEEECT-------------TEEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEeCchHhhhhhHHHHhc---------cCCcEE-EEEEcC-------------CcEEEEeecHHHHHHHHHHhcc
Confidence 44455545999999999999999 799985 666643 4699999999999999999986
Q ss_pred C
Q 002741 657 N 657 (885)
Q Consensus 657 ~ 657 (885)
+
T Consensus 65 ~ 65 (87)
T PF08675_consen 65 N 65 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 190
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.01 E-value=0.12 Score=55.82 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=62.6
Q ss_pred CeEEEcCCCCCCCHHHHH---HHHhccCCeeEEEEeecCC--CC-CcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecC
Q 002741 426 NTIFICNLPFDLDNEEVK---QRFSAFGEVVSFVPVLHQV--TK-RPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKG 499 (885)
Q Consensus 426 ~~l~V~nLp~~~tee~L~---~~F~~fG~I~~v~i~~~~~--~~-~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~g 499 (885)
.-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+ ....-++|.|...++|..||...+ |..++|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~-----g~~~dg 152 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVD-----GFVDDG 152 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhh-----hHHhhh
Confidence 467888899887655554 6899999999987666542 11 112238999999999999999999 999999
Q ss_pred eEEEEEEccCh
Q 002741 500 RQLTVLKALDK 510 (885)
Q Consensus 500 r~l~V~~a~~k 510 (885)
+.|...++.++
T Consensus 153 ~~lka~~gttk 163 (327)
T KOG2068|consen 153 RALKASLGTTK 163 (327)
T ss_pred hhhHHhhCCCc
Confidence 99988887765
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.54 E-value=1.1 Score=36.62 Aligned_cols=53 Identities=23% Similarity=0.280 Sum_probs=43.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC----CCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHh
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPV----GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKF 278 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~l 278 (885)
..|+|+++. +++.++|+.+|..| ++ ..|.++-|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999985 68889999999998 54 457777663 3889999999999999764
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.57 E-value=0.22 Score=53.79 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=63.3
Q ss_pred CCcEEEEcCCCCCCCHHHHH---HhhcCCCCeeEEEEcccCC--CCC-ceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 002741 215 QKWKLIIRNIPFKAKVNEIK---DMFSPVGLVWNVYIPHNTD--TGL-SKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~~~~--~g~-~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i 288 (885)
...-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+. ...-+||.|...++|..||...+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567888888877655554 5889999999998887651 111 11238999999999999999999999999998
Q ss_pred EEEeecCC
Q 002741 289 AVDWAVPK 296 (885)
Q Consensus 289 ~V~~a~~k 296 (885)
+..+..++
T Consensus 156 ka~~gttk 163 (327)
T KOG2068|consen 156 KASLGTTK 163 (327)
T ss_pred HHhhCCCc
Confidence 88887655
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.51 E-value=1.2 Score=47.15 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=57.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCee-EEEEeec
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRP-IAVDWAV 294 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~-i~V~~a~ 294 (885)
...|.|=++|+.-. ..|..+|++||.|....... +..+-+|.|.+..+|.+||.+ ||+.|+|.. |=|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 56788888887654 56778999999998765542 456899999999999999996 999997765 4566655
Q ss_pred CCC
Q 002741 295 PKN 297 (885)
Q Consensus 295 ~k~ 297 (885)
.+.
T Consensus 269 Dks 271 (350)
T KOG4285|consen 269 DKS 271 (350)
T ss_pred CHH
Confidence 443
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=86.15 E-value=1.3 Score=50.52 Aligned_cols=65 Identities=20% Similarity=0.324 Sum_probs=52.8
Q ss_pred cceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002741 577 RTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (885)
Q Consensus 577 ~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng 656 (885)
+|.++|+-||..+.+++++.||.. ..+..+.+|.+..+. -.||+|.+..+|+.|+..|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~-------encPk~iscefa~N~-------------nWyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKG-------ENCPKVISCEFAHND-------------NWYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhcc-------CCCCCceeeeeeecC-------------ceEEEeecchhHHHHHHHHHH
Confidence 477999999999999999999984 257788899887542 379999999999999887765
Q ss_pred CCCCC
Q 002741 657 NPKTF 661 (885)
Q Consensus 657 ~p~~~ 661 (885)
.-+.|
T Consensus 235 evk~f 239 (684)
T KOG2591|consen 235 EVKTF 239 (684)
T ss_pred HHHhh
Confidence 43334
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.94 E-value=0.49 Score=53.02 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 422 DELQNTIFICNLPFDL-DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~-tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
....+.|-+.-.|+.. |.++|...|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. ..+ +..|+||
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~-----~avlnnr 436 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASH-----GAVLNNR 436 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccc-----cceecCc
Confidence 3445667777777776 57899999999999999976332 346999999999998886 445 7999999
Q ss_pred EEEEEEccCh
Q 002741 501 QLTVLKALDK 510 (885)
Q Consensus 501 ~l~V~~a~~k 510 (885)
.|.|.|-.+.
T Consensus 437 ~iKl~whnps 446 (526)
T KOG2135|consen 437 FIKLFWHNPS 446 (526)
T ss_pred eeEEEEecCC
Confidence 9999997663
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.82 E-value=0.43 Score=53.46 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=60.8
Q ss_pred CcEEEEcCCCCCC-CHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEeec
Q 002741 216 KWKLIIRNIPFKA-KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 216 ~~~l~V~nLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a~ 294 (885)
.+.|-+.-.|+.. |.++|..+|.+||.|..|.|-.. .-.|.|+|.+..+|-.|.. .++..|.++.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3455566666655 57889999999999999988553 3469999999999977776 59999999999999987
Q ss_pred CCC
Q 002741 295 PKN 297 (885)
Q Consensus 295 ~k~ 297 (885)
|..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 754
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.57 E-value=3.2 Score=47.57 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCceecCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEcccCCCCCceeEE
Q 002741 184 SACASVALLHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSP--VGLVWNVYIPHNTDTGLSKGFA 261 (885)
Q Consensus 184 ~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~g~~~g~a 261 (885)
--..++...-+..++.+-..|+ .....+.|+++-||..+-.++|+.+|.. +-.+.+|.+..+. -=
T Consensus 149 LI~Evlresp~VqvDekgekVr------p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nW 215 (684)
T KOG2591|consen 149 LIVEVLRESPNVQVDEKGEKVR------PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NW 215 (684)
T ss_pred HHHHHHhcCCCceeccCccccc------cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ce
Confidence 3344455555566666666665 3345678899999999999999999986 6677888876542 15
Q ss_pred EEEecCHHHHHHHHHHhCC--ceeCCeeEE
Q 002741 262 FVKFTCKRDAESAIQKFNG--QKFGKRPIA 289 (885)
Q Consensus 262 fV~F~~~e~A~~Al~~lng--~~i~g~~i~ 289 (885)
||.|.+..||+.|.+.|.- .+|.|++|.
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 9999999999999986532 345555543
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=85.46 E-value=1.3 Score=44.69 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=46.3
Q ss_pred CHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhC--CceeCCeeEEEEeecCC
Q 002741 229 KVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN--GQKFGKRPIAVDWAVPK 296 (885)
Q Consensus 229 te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ln--g~~i~g~~i~V~~a~~k 296 (885)
....|+.+|..|+.+..+.+++ +-+-..|.|.+.+.|..|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3478999999999988877766 34568999999999999999999 99999999999998543
No 199
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.07 E-value=3.1 Score=46.72 Aligned_cols=69 Identities=23% Similarity=0.357 Sum_probs=59.2
Q ss_pred ccceEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 002741 576 SRTRLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLN 655 (885)
Q Consensus 576 s~~~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~ln 655 (885)
+.+.|+|-.+|..+|--||..|+..+ ...|..++|+||.. .++=...|.|.+.++|..-...+|
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~--------~~~I~~irivRd~~--------pnrymvLIkFr~q~da~~Fy~efN 136 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASF--------IKQISDIRIVRDGM--------PNRYMVLIKFRDQADADTFYEEFN 136 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHH--------hhhhheeEEeecCC--------CceEEEEEEeccchhHHHHHHHcC
Confidence 36789999999999999999999964 55799999999753 456689999999999999999999
Q ss_pred CCCCCCC
Q 002741 656 NNPKTFG 662 (885)
Q Consensus 656 g~p~~~g 662 (885)
|. .|.
T Consensus 137 Gk--~Fn 141 (493)
T KOG0804|consen 137 GK--QFN 141 (493)
T ss_pred CC--cCC
Confidence 95 554
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.88 E-value=7.9 Score=35.72 Aligned_cols=66 Identities=15% Similarity=0.219 Sum_probs=48.6
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcCC-CCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeC
Q 002741 217 WKLIIRNIPFKAKVNEIKDMFSPV-GLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFG 284 (885)
Q Consensus 217 ~~l~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~ 284 (885)
..+.+-..|+.++-++|..+.+.+ ..|..++|+++.. .++-.+++.|.+.++|......+||+.|.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344555555566666776666654 3477888888642 25667999999999999999999999884
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.98 E-value=8.9 Score=35.38 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=45.9
Q ss_pred ceEEEcCCCc-ccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 002741 578 TRLVIYNLPK-SMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNN 656 (885)
Q Consensus 578 ~~L~V~NLP~-~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng 656 (885)
+.|.|--+|. .++.++|..+... .-..|..++|++|.. .++=.+.+.|.+.++|..-...+||
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~--------~~~~i~~~riird~~--------pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAP--------FREDIEHIRIIRDGT--------PNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhc--------ccccEEEEEEeeCCC--------CceEEEEEEECCHHHHHHHHHHhCC
Confidence 4444444554 4555566544442 245688899998743 4677999999999999999999999
Q ss_pred C
Q 002741 657 N 657 (885)
Q Consensus 657 ~ 657 (885)
.
T Consensus 77 k 77 (110)
T PF07576_consen 77 K 77 (110)
T ss_pred C
Confidence 6
No 202
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.70 E-value=7.4 Score=32.34 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEE
Q 002741 436 DLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 436 ~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V 504 (885)
.++-++|+..+..|+- .+|..++ .|| ||.|.+..+|++|....+ |..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~-----~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAED-----GTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcC-----CCEEEEEEEEe
Confidence 4678899999999963 2344443 344 899999999999999999 77777666554
No 203
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.01 E-value=5.2 Score=42.63 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred cEEEEcCCCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCceecCee
Q 002741 122 RTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKGGT 201 (885)
Q Consensus 122 rtv~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~ 201 (885)
.-|-|-++|+... .-|..+|..||+|..... +..-.+-+|.|.+.-+|.+||.. |++.|.|..
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~---------------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT---------------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeec---------------CCCCceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 4466677777654 357789999999988664 24456899999999999999985 888888764
Q ss_pred e
Q 002741 202 V 202 (885)
Q Consensus 202 i 202 (885)
+
T Consensus 261 m 261 (350)
T KOG4285|consen 261 M 261 (350)
T ss_pred E
Confidence 4
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=78.17 E-value=1.4 Score=52.73 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--CCeeEEEEeecC
Q 002741 218 KLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKF--GKRPIAVDWAVP 295 (885)
Q Consensus 218 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i--~g~~i~V~~a~~ 295 (885)
+.++.|.+-..+..-|..+|+.||.|.++..+++- ..|.|.|.+.+.|..|+.+|+|..+ -|-+.+|.++.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45566677788889999999999999999887753 4799999999999999999999986 688999999988
Q ss_pred CCCCCCC
Q 002741 296 KNIYSSG 302 (885)
Q Consensus 296 k~~~~~~ 302 (885)
-..+.+.
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 7777665
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.01 E-value=2.7 Score=49.33 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
.++..++||+|+...+..+-++.+...+|.|.++..+ -|||+.|..+..+.+|+..++ -..++|..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t-----~~~~~~~k 102 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLT-----ELNIDDQK 102 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhc-----ccCCCcch
Confidence 3445699999999999999999999999999887542 199999999999999999998 78888888
Q ss_pred EEEEE
Q 002741 502 LTVLK 506 (885)
Q Consensus 502 l~V~~ 506 (885)
+.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 87765
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.12 E-value=8.6 Score=43.33 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhccC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeec
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFG-EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK 498 (885)
Q Consensus 425 ~~~l~V~nLp~~~tee~L~~~F~~fG-~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~ 498 (885)
++.|+|-.+|..+|-.||..|+..|- .|..+++++|.. ..+-..+|.|.+.++|......+| |..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efN-----Gk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFN-----GKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcC-----CCcCC
Confidence 68999999999999999999998764 588899988642 235568999999999999999999 77664
No 207
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=73.89 E-value=8.2 Score=39.10 Aligned_cols=63 Identities=22% Similarity=0.268 Sum_probs=43.8
Q ss_pred CHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeEEEEEEccC
Q 002741 438 DNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALD 509 (885)
Q Consensus 438 tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~l~V~~a~~ 509 (885)
....|+++|..|+.+..+.++.. -+-..|.|.+.++|..|...|+.. +..+.|..|.|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~---~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWD---GTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST-----TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhccc---ccccCCCceEEEEccc
Confidence 45789999999999888765533 445889999999999999998722 5689999999999853
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.53 E-value=1.3e+02 Score=32.50 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=113.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCC-------CCCcceEEEEEeCCHHHHHHHH----HHhccCC
Q 002741 423 ELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQV-------TKRPKGTGFLKFKTVEAATAAV----SASKTTS 491 (885)
Q Consensus 423 ~~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~-------~~~~~g~aFV~F~~~e~A~~Al----~~ln~~~ 491 (885)
-..+.|...|+..+++--.+...|-.||.|++|.++.+.. .........+.|-+.+.+.... +.|..-
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf- 91 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF- 91 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH-
Confidence 3457899999999999999999999999999999887651 2234567889999998876543 222210
Q ss_pred CCCeeecCeEEEEEEccChhhhchhhhhhhcccccccccchhhccCcccCCCCCCCCCChhhHHHHHHHHHHhhhccCCC
Q 002741 492 GLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSP 571 (885)
Q Consensus 492 ~~g~~l~gr~l~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~eg~~~~~sp~~~~~s~~d~~~r~~~~~~~~~~~~~p 571 (885)
...|....|.|.|..-+-..+... +....+...++... + ...+-++
T Consensus 92 --K~~L~S~~L~lsFV~l~y~~~~~~-----~~~~~~~~~~~~~~-----------------------L----~~~i~~~ 137 (309)
T PF10567_consen 92 --KTKLKSESLTLSFVSLNYQKKTDP-----NDEEADFSDYLVAS-----------------------L----QYNIINR 137 (309)
T ss_pred --HHhcCCcceeEEEEEEeccccccc-----cccccchhhHHhhh-----------------------h----hheeecC
Confidence 245677788888865211110000 00000000000000 0 0001111
Q ss_pred CCCcccceEEEcCCCcccCHHHH-HHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHH
Q 002741 572 NFHVSRTRLVIYNLPKSMTEKGL-KKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVA 650 (885)
Q Consensus 572 ~~~~s~~~L~V~NLP~~vte~~L-~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~A 650 (885)
. -.+.|+|. +-..+..++| .+.+ .+....+.+ -=+|.+|.|+--... .+.-+..||.+.|-+..-|...
T Consensus 138 g---ATRSl~Ie-F~~~~~~~dl~~~kL-~fL~~~~n~-RYVlEsIDlVna~~~----~~~Fp~~YaILtFlnIsMAiEV 207 (309)
T PF10567_consen 138 G---ATRSLAIE-FKDPVDKDDLIEKKL-PFLKNSNNK-RYVLESIDLVNADEP----SKHFPKNYAILTFLNISMAIEV 207 (309)
T ss_pred C---cceEEEEE-ecCccchhHHHHHhh-hhhccCCCc-eEEEEEEEEeccCcc----cccCCcceEEEeehhHHhHHHH
Confidence 1 11346664 3344433333 2222 221111110 124677887743221 2345677999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEE
Q 002741 651 LRVLNNNPKTFGPEHRPIVEFA 672 (885)
Q Consensus 651 l~~lng~p~~~g~~~rliV~~A 672 (885)
+..|..+....|-.+-..|..+
T Consensus 208 ~dYlk~~~~~~~Iskc~fVs~~ 229 (309)
T PF10567_consen 208 LDYLKSNSKKLGISKCFFVSVQ 229 (309)
T ss_pred HHHHHhcccccCcceEEEEecc
Confidence 9999865344554455556665
No 209
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.71 E-value=4.3 Score=35.77 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=43.6
Q ss_pred EEEEeCCHHHHHHHHHHh-CCceecCeeeeecccC--CC-------CCCCCCcEEEEcCCCCCCCHHHHHHhhc
Q 002741 175 SAVLYTTVKSACASVALL-HQKEIKGGTVWARQLG--GE-------GSKTQKWKLIIRNIPFKAKVNEIKDMFS 238 (885)
Q Consensus 175 afV~F~s~e~A~~Ai~~l-n~~~i~g~~i~v~~~~--~~-------~~~~~~~~l~V~nLp~~~te~~L~~~F~ 238 (885)
|+|.|....-|..-+..- +.-.+++..+.+...+ .. ......++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999887753 2234455554443211 10 1235678999999999999999987643
No 210
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.27 E-value=24 Score=41.15 Aligned_cols=129 Identities=13% Similarity=0.114 Sum_probs=76.6
Q ss_pred ccCCCcEEEEcCCCcc-chHHHHHHHHhcC----CCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHH
Q 002741 117 KQRVARTVIIGGLLNA-DMAEEVHRLAGSI----GTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVAL 191 (885)
Q Consensus 117 ~~~~~rtv~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ 191 (885)
....++.|-|.|+.|. +...+|.-+|+.| |.|.+|.|.... -|+ ..
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe----------FGk-------------------eR 220 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE----------FGK-------------------ER 220 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh----------hhH-------------------HH
Confidence 3556889999999997 5588999998866 489999883321 121 23
Q ss_pred hCCceecCeeeeecccCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHH
Q 002741 192 LHQKEIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDA 271 (885)
Q Consensus 192 ln~~~i~g~~i~v~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A 271 (885)
|..-.+.|.++-+-........ .. .....-+.-.+..+..|+. . ....-||.|+|.+.+.|
T Consensus 221 M~eEeV~GP~~el~~~~e~~~~-s~-------sD~ee~~~~~~~kLR~Yq~-~----------rLkYYyAVvecDsi~tA 281 (650)
T KOG2318|consen 221 MKEEEVHGPPKELFKPVEEYKE-SE-------SDDEEEEDVDREKLRQYQL-N----------RLKYYYAVVECDSIETA 281 (650)
T ss_pred hhhhcccCChhhhccccccCcc-cc-------cchhhhhhHHHHHHHHHHh-h----------hheeEEEEEEecCchHH
Confidence 4444455554433211111000 00 1111111223444444431 1 11234899999999999
Q ss_pred HHHHHHhCCceeC--CeeEEEEee
Q 002741 272 ESAIQKFNGQKFG--KRPIAVDWA 293 (885)
Q Consensus 272 ~~Al~~lng~~i~--g~~i~V~~a 293 (885)
.+....++|..|. +..|-+.|.
T Consensus 282 ~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 282 KAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHhcCcceeccccceeeeeec
Confidence 9999999999995 556666664
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=67.23 E-value=4.9 Score=48.46 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=59.3
Q ss_pred eEEEcCCCcccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHHHHHHhcCCC
Q 002741 579 RLVIYNLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNP 658 (885)
Q Consensus 579 ~L~V~NLP~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~Al~~lng~p 658 (885)
..++.|.+-..+-.-|..+|.+ ||.|.+.+.+++ -..|.|+|.+.+.|..|+.+|+|.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~---------yg~v~s~wtlr~------------~N~alvs~~s~~sai~a~dAl~gk- 357 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSD---------YGSVASAWTLRD------------LNMALVSFSSVESAILALDALQGK- 357 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHh---------hcchhhheeccc------------ccchhhhhHHHHHHHHhhhhhcCC-
Confidence 4666777778889999999995 999999998876 457999999999999999999998
Q ss_pred CCCCCCCceEEEEEc
Q 002741 659 KTFGPEHRPIVEFAV 673 (885)
Q Consensus 659 ~~~g~~~rliV~~A~ 673 (885)
.++-.+-.-.|.||.
T Consensus 358 evs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 358 EVSVTGAPSRVSFAK 372 (1007)
T ss_pred cccccCCceeEEecc
Confidence 455433444488983
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=64.76 E-value=22 Score=30.14 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCCCHHHHHHhhcCCCC-----eeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEee
Q 002741 226 FKAKVNEIKDMFSPVGL-----VWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWA 293 (885)
Q Consensus 226 ~~~te~~L~~~F~~~G~-----I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~a 293 (885)
..++..+|..++...+. |-.|.|.. .|+||+-... .|..++..|++..+.|+.+.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 46778888888877644 55666644 3789987765 788899999999999999999864
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=63.58 E-value=22 Score=29.60 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=43.2
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEE
Q 002741 227 KAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAV 290 (885)
Q Consensus 227 ~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V 290 (885)
.++-++|+..+..|+-.. |. .+ ..| =||.|.+..+|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~--~d-----~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IR--DD-----RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EE--ec-----CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 577899999999997543 33 23 223 489999999999999999999988777654
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=61.21 E-value=6.4 Score=46.38 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeEEEEe
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i~V~~ 292 (885)
.....+|||+|+...+..+-+..+...+|.|.++.... |||..|....-+.+|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34567999999999999999999999999988765543 899999999999999998888888887776653
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.91 E-value=14 Score=32.63 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEec
Q 002741 14 GYVQFAVMEDANRAVEMKNGT-SVGGRKIGVKHA 46 (885)
Q Consensus 14 afV~F~~~edA~~Al~~lng~-~i~Gr~I~V~~a 46 (885)
|+|+|..++=|++-+...... .+.+..++|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 789999999999999884333 356667666544
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.90 E-value=40 Score=39.43 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=62.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHhcc----CCeeEEEEeecCC----------CCC---------------------
Q 002741 422 DELQNTIFICNLPFD-LDNEEVKQRFSAF----GEVVSFVPVLHQV----------TKR--------------------- 465 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~-~tee~L~~~F~~f----G~I~~v~i~~~~~----------~~~--------------------- 465 (885)
...+++|-|.||.|+ +...+|.-+|+.| |.|.+|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 455689999999987 6789999999865 5888887754321 111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhccCCCCCeeec--CeEEEEEEcc
Q 002741 466 ----------------PKGTGFLKFKTVEAATAAVSASKTTSGLGIFLK--GRQLTVLKAL 508 (885)
Q Consensus 466 ----------------~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~--gr~l~V~~a~ 508 (885)
..-||.|+|.+.+.|......+. |+.|. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CD-----G~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECD-----GIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcC-----cceeccccceeeeeecC
Confidence 13479999999999999999999 98886 4566666643
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=57.76 E-value=11 Score=31.90 Aligned_cols=34 Identities=32% Similarity=0.596 Sum_probs=20.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEec
Q 002741 12 GFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHA 46 (885)
Q Consensus 12 G~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a 46 (885)
-|+||.-.. +.|..+++.|++..+.|++|+|+.|
T Consensus 41 ~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 477877654 4899999999999999999999875
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.78 E-value=26 Score=33.87 Aligned_cols=78 Identities=9% Similarity=-0.016 Sum_probs=54.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhCCceecCeeeeecccCCCCC------CCCCcEEEEcCCCCC-CCHHHHHHhhcCCCCee
Q 002741 172 MDASAVLYTTVKSACASVALLHQKEIKGGTVWARQLGGEGS------KTQKWKLIIRNIPFK-AKVNEIKDMFSPVGLVW 244 (885)
Q Consensus 172 ~g~afV~F~s~e~A~~Ai~~ln~~~i~g~~i~v~~~~~~~~------~~~~~~l~V~nLp~~-~te~~L~~~F~~~G~I~ 244 (885)
.++..+.|.+.+++..++.. ....+.|..+.+..-.+... .....-|.|.|||.. .+++-|..+.+.+|.+.
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred CCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 46899999999999988763 44556666665544322111 112334778899987 67788899999999998
Q ss_pred EEEEcc
Q 002741 245 NVYIPH 250 (885)
Q Consensus 245 ~v~i~~ 250 (885)
.+....
T Consensus 134 ~vD~~t 139 (153)
T PF14111_consen 134 EVDENT 139 (153)
T ss_pred EEEcCC
Confidence 776643
No 219
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=37.43 E-value=31 Score=34.42 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=54.7
Q ss_pred cEEEEcCCCCCCC-----HHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCe-eEEE
Q 002741 217 WKLIIRNIPFKAK-----VNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKR-PIAV 290 (885)
Q Consensus 217 ~~l~V~nLp~~~t-----e~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~-~i~V 290 (885)
..+++.+++..+- ......+|.+|-+.....+++ +.+..-|.|.+++.|..|...+++..|.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577777776543 223446677676655555555 566788999999999999999999999887 7887
Q ss_pred EeecCCC
Q 002741 291 DWAVPKN 297 (885)
Q Consensus 291 ~~a~~k~ 297 (885)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776543
No 220
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=37.23 E-value=55 Score=30.06 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=60.2
Q ss_pred CCccchHHHHHHHHhcCCCeEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHHHHHHHHHHhCCc--eecCeeeeecc
Q 002741 129 LLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK--EIKGGTVWARQ 206 (885)
Q Consensus 129 Lp~~~te~~L~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e~A~~Ai~~ln~~--~i~g~~i~v~~ 206 (885)
||+-+. .|-+.|..-|.|.+|..+.. |.+ ..|+-.++|. .++|. ||+-.
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq----------------------ypd----ndal~~~~G~lE~vDg~-i~IGs 61 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ----------------------YPD----NDALLYVHGTLEQVDGN-IRIGS 61 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec----------------------cCC----chhhheeeeehhhccCc-EEEcc
Confidence 566554 47889999999999875321 121 1122233442 23444 55521
Q ss_pred cCCCCCCCCCcEEEEcC---------CCCCCCHHHHHHhhcC---CCCeeEEEEcccCCCCCceeEEEEEecCH
Q 002741 207 LGGEGSKTQKWKLIIRN---------IPFKAKVNEIKDMFSP---VGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (885)
Q Consensus 207 ~~~~~~~~~~~~l~V~n---------Lp~~~te~~L~~~F~~---~G~I~~v~i~~~~~~g~~~g~afV~F~~~ 268 (885)
......|+|.+ -|+.+|-.+|+++|+. |-.|.+-.+.+|....-+-..||..|...
T Consensus 62 ------~q~~~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 62 ------GQTPASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ------CCCcccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 11222333333 3678899999999986 55565555555533223566788888755
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=32.84 E-value=36 Score=33.96 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=52.6
Q ss_pred CeEEEcCCCCCCC-H----HHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCe
Q 002741 426 NTIFICNLPFDLD-N----EEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGR 500 (885)
Q Consensus 426 ~~l~V~nLp~~~t-e----e~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr 500 (885)
+++.+.+++..+- . .....+|.+|-......+++ +.+...|.|.+++.|..|...++ +..|.|.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~-----~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLH-----STSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhh-----hcccCCC
Confidence 5688888887653 2 23345666665554444332 34566789999999999999999 8888887
Q ss_pred -EEEEEEccCh
Q 002741 501 -QLTVLKALDK 510 (885)
Q Consensus 501 -~l~V~~a~~k 510 (885)
.+...++.+.
T Consensus 80 ~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 80 NELKLYFAQPG 90 (193)
T ss_pred ceEEEEEccCC
Confidence 8888888764
No 222
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=29.03 E-value=32 Score=33.20 Aligned_cols=83 Identities=17% Similarity=0.067 Sum_probs=56.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeccccchhHhhhhcccchhhhhhhhhcccCCCCccccccccchhh
Q 002741 10 HRGFGYVQFAVMEDANRAVEMKNGTSVGGRKIGVKHAMHRASLEQRRSKVTQEVQAEDIEKTMDNKDGVISGAEKHSSKL 89 (885)
Q Consensus 10 srG~afV~F~~~edA~~Al~~lng~~i~Gr~I~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (885)
..|+..++|.+.+|+.+++.. ..-.|.|..|.+..-.+....
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~------------------------------------- 95 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNP------------------------------------- 95 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccc-------------------------------------
Confidence 568899999999999999887 556677777766544211000
Q ss_pred hhcCCCCCCcccccccccccCCcccccccCCCcEEEEcCCCcc-chHHHHHHHHhcCCCeEEEEe
Q 002741 90 LESGKTVKPRKAATLGIDLADKEDCSQKQRVARTVIIGGLLNA-DMAEEVHRLAGSIGTVCSVTY 153 (885)
Q Consensus 90 ~~~~~~~~~r~~~~~~~~~~~~~~~s~~~~~~rtv~V~nLp~~-~te~~L~~~F~~~G~I~~v~i 153 (885)
. ...-.....-|.|.|||.. .+++-+..+.+.+|.+..+..
T Consensus 96 ----------------------~-~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 96 ----------------------S-EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred ----------------------c-ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 0 0000112345678899998 567788899999999998876
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.95 E-value=1.3e+02 Score=32.08 Aligned_cols=50 Identities=6% Similarity=0.042 Sum_probs=38.5
Q ss_pred CCCcEEEEcCCCccchHHHHHHHHhcCCC-eEEEEeeCCchhhhhccccCCCCCcceEEEEeCCHH
Q 002741 119 RVARTVIIGGLLNADMAEEVHRLAGSIGT-VCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVK 183 (885)
Q Consensus 119 ~~~rtv~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~~k~~~~~~~~~~~g~s~g~afV~F~s~e 183 (885)
....-|+++|||.++--.||...+.+.|- ..++.. -...|-||++|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---------------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---------------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee---------------ecCCcceeEecCCcc
Confidence 34566999999999999999999998873 355544 345678999998643
No 224
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=24.48 E-value=12 Score=43.20 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=53.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhccCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHhccCCCCCeeecCeE
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQ 501 (885)
Q Consensus 424 ~~~~l~V~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ln~~~~~g~~l~gr~ 501 (885)
..++||++|++++++-.+|..+|..+-.+..+.+...........+++|.|+-.-.-.-|+.+|| +..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn-----~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN-----GIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh-----hccccccc
Confidence 35899999999999999999999998766666443332223345678899997777777777777 55554443
No 225
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=23.83 E-value=1.6e+02 Score=31.93 Aligned_cols=83 Identities=8% Similarity=0.212 Sum_probs=61.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccC-------CCCCceeEEEEEecCHHHHHHHHHH----hC-
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNT-------DTGLSKGFAFVKFTCKRDAESAIQK----FN- 279 (885)
Q Consensus 212 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-------~~g~~~g~afV~F~~~e~A~~Al~~----ln- 279 (885)
.....+.|.+.|+..+++--.+...|-.||+|++|.++.+. ..........+.|-+.+.+-..... |+
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999998764 1123446788999999887654432 22
Q ss_pred -CceeCCeeEEEEeec
Q 002741 280 -GQKFGKRPIAVDWAV 294 (885)
Q Consensus 280 -g~~i~g~~i~V~~a~ 294 (885)
...+....|.|.|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 123566777777764
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=23.63 E-value=88 Score=33.33 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=36.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCH
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK 268 (885)
Q Consensus 216 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~ 268 (885)
..-|+|+|||.++--.+|+..+...|.+- ..|.. .| ..|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw---kg-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW---KG-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEee---ec-CCcceeEecCCc
Confidence 35699999999999999999998877542 22322 23 667899999864
No 227
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=22.90 E-value=3.1e+02 Score=25.53 Aligned_cols=52 Identities=10% Similarity=0.118 Sum_probs=33.6
Q ss_pred cccCHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHHH
Q 002741 587 KSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALV 649 (885)
Q Consensus 587 ~~vte~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~~ 649 (885)
..++.+||++-+.+. |-.-.++-++.+.++- .+.|++.|||.| |++.+.|.+
T Consensus 33 a~vsK~EirEKla~m--------Ykt~~d~V~vfgfrt~--~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKM--------YKTTPDAVFVFGFRTH--FGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHH--------hcCCcceEEEEEeeec--cCCcccceeeee-eehHHHHHh
Confidence 367889999998874 4443344344333332 355788999988 677776543
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.60 E-value=15 Score=42.44 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCHHHHHHHHHHhCCceeCCeeE
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPI 288 (885)
Q Consensus 215 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~i 288 (885)
..++|||+|++++++-.+|..+++.+-.+..+.+...........+++|.|.---.-..|+.+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 35789999999999999999999998777666554332222355678999998878888888888877654443
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=1.8e+02 Score=32.71 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=45.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHhccCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 002741 422 DELQNTIFICNLPFDLDNEEVKQRFSAFGEV-VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSA 486 (885)
Q Consensus 422 ~~~~~~l~V~nLp~~~tee~L~~~F~~fG~I-~~v~i~~~~~~~~~~g~aFV~F~~~e~A~~Al~~ 486 (885)
......|-|.++|...-.+||...|+.|+.- -.|.++-| -.||..|.+...|..|+-.
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 3455789999999999999999999999753 23444433 3699999999999999854
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.20 E-value=71 Score=29.79 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=30.2
Q ss_pred cEEEEcCCCCC---------CCHHHHHHhhcCCCCeeEEEEcccCCCCCceeEEEEEecCH-HHHHHHHH
Q 002741 217 WKLIIRNIPFK---------AKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCK-RDAESAIQ 276 (885)
Q Consensus 217 ~~l~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~-e~A~~Al~ 276 (885)
.+++|-|+|.. .+.++|.+.|+.|.++. ++.+.... | ..|+++|.|..- .--..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~-g-h~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ-G-HTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT-E-EEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC-C-CcEEEEEEECCChHHHHHHHH
Confidence 36777787553 35688999999999876 55555432 3 789999999953 33334443
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=21.23 E-value=2e+02 Score=26.78 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=30.9
Q ss_pred ceEEEcCCCccc---------CHHHHHHHHHHHHhhhhccCCCCeEEEEEeecccCCccCCCCCcceEEEEEeCCHHHHH
Q 002741 578 TRLVIYNLPKSM---------TEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHAL 648 (885)
Q Consensus 578 ~~L~V~NLP~~v---------te~~L~~lF~~~~~~~~~~~~G~I~~v~i~~d~~~~~~~~~~~skG~aFV~F~s~e~A~ 648 (885)
.+++|.|+|... +-++|.+.|.. |..++ ++.+.+.. -+.|+++|.|..--...
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~---------f~p~k-v~~l~~~~--------gh~g~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAE---------FNPLK-VKPLYGKQ--------GHTGFAIVEFNKDWSGF 70 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH------------SE-EEEEEETT--------EEEEEEEEE--SSHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHh---------cCCce-eEECcCCC--------CCcEEEEEEECCChHHH
Confidence 478899997654 55789999996 66664 66666542 36899999999865543
Q ss_pred H
Q 002741 649 V 649 (885)
Q Consensus 649 ~ 649 (885)
.
T Consensus 71 ~ 71 (116)
T PF03468_consen 71 K 71 (116)
T ss_dssp H
T ss_pred H
Confidence 3
Done!