Query 002741
Match_columns 885
No_of_seqs 401 out of 4169
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 21:11:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002741.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_108-112//hhsearch_pdb/002741hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 1.0 1 1 315.4 27.4 253 116-510 36-291 (292)
2 3smz_A Protein raver-1, ribonu 1.0 1 1 315.2 31.9 245 120-512 21-266 (284)
3 3smz_A Protein raver-1, ribonu 1.0 1 1 314.5 30.6 245 215-677 21-266 (284)
4 2ghp_A U4/U6 snRNA-associated 1.0 1 1 305.5 24.2 251 212-674 37-290 (292)
5 4f02_A Polyadenylate-binding p 1.0 1 1 232.8 20.6 167 424-674 14-180 (213)
6 4f02_A Polyadenylate-binding p 1.0 1 1 228.1 20.5 173 213-513 12-184 (213)
7 1l3k_A Heterogeneous nuclear r 1.0 1 1 219.8 21.8 79 215-294 12-90 (196)
8 2qfj_A FBP-interacting repress 1.0 1 1 216.7 21.5 176 425-673 28-203 (216)
9 2qfj_A FBP-interacting repress 1.0 1 1 216.5 21.8 179 216-511 28-206 (216)
10 1b7f_A Protein (SXL-lethal pro 1.0 1 1 216.1 21.3 166 425-672 3-168 (168)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=1.00 E-value=1 Score=315.39 Aligned_cols=253 Identities=19% Similarity=0.273 Sum_probs=220.8
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 11477867999199930209999998704798279996089134431034678987644999969999999999984896
Q 002741 116 QKQRVARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQK 195 (885)
Q Consensus 116 ~~~~~~r~i~V~nLp~~~te~el~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~~~g~AfV~F~s~e~A~~Ai~~l~~~ 195 (885)
...+..++|||+|||+++++++|+++|+.||.|..|.++.++ . .++|||||+|.+.++|..|+. +++.
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~----------~-~~~g~afV~f~~~~~A~~A~~-~~~~ 103 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL----------K-KNFRFARIEFARYDGALAAIT-KTHK 103 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT----------T-SSSEEEEEEESSHHHHHHHHT-TTTC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECC----------C-CCCEEEEEEECCHHHHHHHHH-HCCC
T ss_conf 568887789990899889999999999864984899999879----------9-995799999777999999997-1895
Q ss_pred EECCEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCC-CEEEEEECCCCCCCCCEEEEEEEECCHHHHHHH
Q ss_conf 0169164631468999989884899847999999989998303798-736999810399998202999994599999999
Q 002741 196 EIKGGTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVG-LVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESA 274 (885)
Q Consensus 196 ~l~g~~i~v~~~~~~~~~~~~~~I~V~nLp~~~tee~L~~~F~~~G-~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~A 274 (885)
.+.|+.|.+... ..++|||+|||+.+++++|+++|+.|| .|..|.++.+.. +.++|||||+|.+.++|..|
T Consensus 104 ~~~g~~i~v~~~-------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A 175 (292)
T 2ghp_A 104 VVGQNEIIVSHL-------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYC 175 (292)
T ss_dssp EETTEECEEEEC-------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHH
T ss_pred EECCCEEEEEEC-------CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEECCC-CCCCEEEEEEECCHHHHHHH
T ss_conf 869947999988-------9988999799998999999999998499728999876799-98352999997889999999
Q ss_pred HHHHCCCEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99948915498117999606998878798644645789999999999998998556777889974225799998840689
Q 002741 275 IQKFNGQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEV 354 (885)
Q Consensus 275 l~~lng~~i~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 354 (885)
+..|++..|.|+.|.|.|+.+.......
T Consensus 176 ~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------------------------------------------------- 203 (292)
T 2ghp_A 176 VEKLNGLKIEGYTLVTKVSNPLEKSKRT---------------------------------------------------- 203 (292)
T ss_dssp HHHHTTCEETTEECEEEECCCC----------------------------------------------------------
T ss_pred HHHHCCCEECCCEEEEEECCCCCCCCCC----------------------------------------------------
T ss_conf 9982897749907999988877543324----------------------------------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 99999741013678999999873010048888886022210001245333566888998766567888998859983999
Q 002741 355 DIARKVLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLP 434 (885)
Q Consensus 355 ~~a~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~i~I~nLp 434 (885)
.......++|||+|||
T Consensus 204 ----------------------------------------------------------------~~~~~~~~~l~v~nlp 219 (292)
T 2ghp_A 204 ----------------------------------------------------------------DSATLEGREIMIRNLS 219 (292)
T ss_dssp -------------------------------------------------------------------CCTTTEEEEEEEC
T ss_pred ----------------------------------------------------------------CCCCCCCCEEEEECCC
T ss_conf ----------------------------------------------------------------3567777569997799
Q ss_pred CC-CCHHHHHHHHHCCCCEEEEEEEECCC-CCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCH
Q ss_conf 99-99999999975069826999953289-998621899994899899999998156799882564919999991370
Q 002741 435 FD-LDNEEVKQRFSAFGEVVSFVPVLHQV-TKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDK 510 (885)
Q Consensus 435 ~~-~tee~L~~~F~~fG~I~~v~i~~~~~-~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V~~a~~k 510 (885)
+. +++++|+++|+.||.|..+.++.+.. ++.++|||||+|.+.++|.+|+ .|| |..|+|++|.|.||.++
T Consensus 220 ~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~-----g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 220 TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN-----RSLLGNREISVSLADKK 291 (292)
T ss_dssp TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT-----TEEETTEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHH-HHC-----CCEECCCEEEEEEECCC
T ss_conf 2208999999998545874699997457767887559999968999999999-746-----97889968999983579
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=1.00 E-value=1 Score=315.19 Aligned_cols=245 Identities=20% Similarity=0.263 Sum_probs=152.0
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECC
Q ss_conf 78679991999302099999987047982799960891344310346789876449999699999999999848960169
Q 002741 120 VARTVIIGGLLNADMAEEVHRLAGSIGTVCSVTYPLPKEELEQHGLAQEGCKMDASAVLYTTVKSACASVALLHQKEIKG 199 (885)
Q Consensus 120 ~~r~i~V~nLp~~~te~el~~~F~~~G~I~~v~i~~~k~~~~~~~~~~~g~~~g~AfV~F~s~e~A~~Ai~~l~~~~l~g 199 (885)
.+++|||+|||.++++++|+++|+.|| |.++.+ +.++|||||+|.+.++|..|+..|++..+.|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 84 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---------------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRE 84 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---------------ETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCC-CEEEEE---------------ECCCCEEEEEECCHHHHHHHHHHCCCCEECC
T ss_conf 997799959998899999999998749-779999---------------6678779999678999999999707985588
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHC
Q ss_conf 16463146899998988489984799999998999830379873699981039999820299999459999999999948
Q 002741 200 GTVWARQLGGEGSKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFN 279 (885)
Q Consensus 200 ~~i~v~~~~~~~~~~~~~~I~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~ln 279 (885)
+.|.+... ...++|||+|||+++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|..|+..|+
T Consensus 85 ~~i~v~~~------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 85 RELSVQLQ------PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp EECEEEEC------CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred EEEEEEEC------CCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 27999843------899889990899747899999999863984689997508999544499999899999999999808
Q ss_pred CCEECCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 91549811799960699887879864464578999999999999899855677788997422579999884068999999
Q 002741 280 GQKFGKRPIAVDWAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARK 359 (885)
Q Consensus 280 g~~i~g~~I~V~~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~a~~ 359 (885)
+..+.|+.|.|.|+.+.....
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~~----------------------------------------------------------- 179 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLTP----------------------------------------------------------- 179 (284)
T ss_dssp TCEETTEECEEEECCGGGCCT-----------------------------------------------------------
T ss_pred CCEECCCEEEEEECCCCCCCC-----------------------------------------------------------
T ss_conf 977689479999888888985-----------------------------------------------------------
Q ss_pred HHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-C
Q ss_conf 741013678999999873010048888886022210001245333566888998766567888998859983999999-9
Q 002741 360 VLNKLTSTTGSLPSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDL-D 438 (885)
Q Consensus 360 ~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~i~I~nLp~~~-t 438 (885)
.....++|||+|||+.+ +
T Consensus 180 -------------------------------------------------------------~~~~~~~l~v~nlp~~~~~ 198 (284)
T 3smz_A 180 -------------------------------------------------------------ALLHSRCLCVDRLPPGFND 198 (284)
T ss_dssp -------------------------------------------------------------TTTSCSEEEEECCCTTCCC
T ss_pred -------------------------------------------------------------CCCCCCEEEEECCCCCCCC
T ss_conf -------------------------------------------------------------4478647998469965379
Q ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCHHH
Q ss_conf 99999997506982699995328999862189999489989999999815679988256491999999137011
Q 002741 439 NEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKL 512 (885)
Q Consensus 439 ee~L~~~F~~fG~I~~v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V~~a~~k~~ 512 (885)
+++|+++|+.||.|..+.++.+. ++.++|+|||+|.+.++|.+|+..|+ |..|+|++|.|.|+.++..
T Consensus 199 ~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~-----g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 199 VDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD-----GLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCSSSC
T ss_pred HHHHHHHHHCCCCEEEEEEEECC-CCCCCCEEEEEECCHHHHHHHHHHHC-----CCCCCCEEEEEEEECCCCC
T ss_conf 99999985178876999987789-99856379998589899999999967-----9860984899998157986
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=1.00 E-value=1 Score=314.47 Aligned_cols=245 Identities=21% Similarity=0.276 Sum_probs=216.4
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEEC
Q ss_conf 88489984799999998999830379873699981039999820299999459999999999948915498117999606
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~I~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~I~V~~a~ 294 (885)
..++|||+|||+++++++|+++|+.|| |..+.+. .++|||||+|.+.++|..|+..|++..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD------KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE------TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCC-CEEEEEE------CCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEECC
T ss_conf 997799959998899999999998749-7799996------678779999678999999999707985588279998438
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99887879864464578999999999999899855677788997422579999884068999999741013678999999
Q 002741 295 PKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSL 374 (885)
Q Consensus 295 pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~a~~~~~~~~~~~g~~p~~ 374 (885)
+
T Consensus 94 ~------------------------------------------------------------------------------- 94 (284)
T 3smz_A 94 T------------------------------------------------------------------------------- 94 (284)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
T ss_conf 9-------------------------------------------------------------------------------
Q ss_pred CCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 87301004888888602221000124533356688899876656788899885998399999999999999750698269
Q 002741 375 SDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVS 454 (885)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~i~I~nLp~~~tee~L~~~F~~fG~I~~ 454 (885)
.++|||+|||+.+++++|+++|+.||.|..
T Consensus 95 --------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~ 124 (284)
T 3smz_A 95 --------------------------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLER 124 (284)
T ss_dssp --------------------------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred --------------------------------------------------CCEEEECCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf --------------------------------------------------988999089974789999999986398468
Q ss_pred EEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCHHHHCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 99953289998621899994899899999998156799882564919999991370111135542100223454530120
Q 002741 455 FVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRNLYLA 534 (885)
Q Consensus 455 v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~ 534 (885)
+.++.+..++.++|||||+|.+.++|.+|+..++ +..+.|+.|.|.|+.++....
T Consensus 125 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~-----~~~~~g~~i~v~~a~~~~~~~-------------------- 179 (284)
T 3smz_A 125 CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL-----GKPLGPRTLYVHWTDAGQLTP-------------------- 179 (284)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCGGGCCT--------------------
T ss_pred EEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHC-----CCEECCCEEEEEECCCCCCCC--------------------
T ss_conf 9997508999544499999899999999999808-----977689479999888888985--------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 0276668997778999046899999899743104999987655648972899555-899999999999763201489973
Q 002741 535 KEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKSM-TEKGLKKLCIDAVVSRASKQKPVI 613 (885)
Q Consensus 535 ~~g~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~I~NLP~~~-te~eL~~lF~~~~~~~~~~~~G~I 613 (885)
.....++|||+|||.++ |+++|+++|+ +||.|
T Consensus 180 --------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~---------~~G~i 212 (284)
T 3smz_A 180 --------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALS---------AVHSP 212 (284)
T ss_dssp --------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTC---------SSSCC
T ss_pred --------------------------------------CCCCCCEEEEECCCCCCCCHHHHHHHHH---------CCCCE
T ss_conf --------------------------------------4478647998469965379999999851---------78876
Q ss_pred EEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 8999833055786678889601999992799999999999609999889999609999720299
Q 002741 614 KQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVDNVQ 677 (885)
Q Consensus 614 ~~v~i~rd~~~g~~~~~~~srG~aFV~F~~~e~A~~Al~~Lng~p~~~g~~~rliV~~A~~~~~ 677 (885)
..++++++. + +.++|+|||+|.++++|.+|+..|||. .++ ++.|.|.||.....
T Consensus 213 ~~v~i~~~~-~------g~~~g~afV~f~~~~~A~~A~~~l~g~--~~~-g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 213 TFCQLACGQ-D------GQLKGFAVLEYETAEMAEEAQQQADGL--SLG-GSHLRVSFCAPGPP 266 (284)
T ss_dssp SEEEEEECS-S------CCEEEEEEEECSSHHHHHHHHHHHTTC--EET-TEECEEEECCSSSC
T ss_pred EEEEEEECC-C------CCCCCEEEEEECCHHHHHHHHHHHCCC--CCC-CEEEEEEEECCCCC
T ss_conf 999987789-9------985637999858989999999996798--609-84899998157986
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=1.00 E-value=1 Score=305.54 Aligned_cols=251 Identities=17% Similarity=0.247 Sum_probs=218.0
Q ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
Q ss_conf 98988489984799999998999830379873699981039999820299999459999999999948915498117999
Q 002741 212 SKTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVD 291 (885)
Q Consensus 212 ~~~~~~~I~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~I~V~ 291 (885)
.....++|||+|||+++++++|+++|+.||.|..|.++.+... ++|||||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCC--CCEEEEEEECCHHHHHHHHH-HCCCEECCCEEEEE
T ss_conf 6888778999089988999999999986498489999987999--95799999777999999997-18958699479999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 60699887879864464578999999999999899855677788997422579999884068999999741013678999
Q 002741 292 WAVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSL 371 (885)
Q Consensus 292 ~a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~a~~~~~~~~~~~g~~ 371 (885)
++.
T Consensus 114 ~~~----------------------------------------------------------------------------- 116 (292)
T 2ghp_A 114 HLT----------------------------------------------------------------------------- 116 (292)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ECC-----------------------------------------------------------------------------
T ss_conf 889-----------------------------------------------------------------------------
Q ss_pred CCCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCC-
Q ss_conf 9998730100488888860222100012453335668889987665678889988599839999999999999975069-
Q 002741 372 PSLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFG- 450 (885)
Q Consensus 372 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~i~I~nLp~~~tee~L~~~F~~fG- 450 (885)
.++|||+|||+.+++++|+++|+.||
T Consensus 117 -----------------------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~ 143 (292)
T 2ghp_A 117 -----------------------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINV 143 (292)
T ss_dssp -----------------------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTC
T ss_pred -----------------------------------------------------CCEEEEECCCCCCCHHHHHHHHHHHCC
T ss_conf -----------------------------------------------------988999799998999999999998499
Q ss_pred CEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCHHHHCHHHHHHHCCCCCCCCC
Q ss_conf 82699995328999862189999489989999999815679988256491999999137011113554210022345453
Q 002741 451 EVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLAHDKEIDKSKNETNDHRN 530 (885)
Q Consensus 451 ~I~~v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V~~a~~k~~~~~~~~~~~~~~~~~~~~ 530 (885)
.|..|.++.+.. +.++|||||+|.+.++|.+|+..|+ +..|.|+.|.|.++.+.......
T Consensus 144 ~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~a~~~~~~~~~-------------- 203 (292)
T 2ghp_A 144 VALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLN-----GLKIEGYTLVTKVSNPLEKSKRT-------------- 203 (292)
T ss_dssp CCCEEECC--------CCEEEEECSSHHHHHHHHHHHT-----TCEETTEECEEEECCCC--------------------
T ss_pred CEEEEEEEECCC-CCCCEEEEEEECCHHHHHHHHHHHC-----CCEECCCEEEEEECCCCCCCCCC--------------
T ss_conf 728999876799-9835299999788999999999828-----97749907999988877543324--------------
Q ss_pred CHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 0120027666899777899904689999989974310499998765564897289955-589999999999976320148
Q 002741 531 LYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYNLPKS-MTEKGLKKLCIDAVVSRASKQ 609 (885)
Q Consensus 531 ~~l~~~g~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~I~NLP~~-~te~eL~~lF~~~~~~~~~~~ 609 (885)
.....+.++|||+|||.. +|+++|+++|. +
T Consensus 204 ----------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~---------~ 234 (292)
T 2ghp_A 204 ----------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFE---------G 234 (292)
T ss_dssp -------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHG---------G
T ss_pred ----------------------------------------CCCCCCCCEEEEECCCCCCCCHHHHHHHHH---------C
T ss_conf ----------------------------------------356777756999779922089999999985---------4
Q ss_pred CCCEEEEEEEECCC-CCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
Q ss_conf 99738999833055-786678889601999992799999999999609999889999609999720
Q 002741 610 KPVIKQIKFLQSLK-KGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPEHRPIVEFAVD 674 (885)
Q Consensus 610 ~G~I~~v~i~rd~~-~g~~~~~~~srG~aFV~F~~~e~A~~Al~~Lng~p~~~g~~~rliV~~A~~ 674 (885)
||.|..|+++++.. ++ .++|||||+|.++++|.+|+ .|||. .++ ++.|.|.||..
T Consensus 235 ~G~v~~v~i~~~~~~tg------~~~g~afV~F~~~~~A~~A~-~l~g~--~~~-g~~i~V~~a~~ 290 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEHS------FNNCCAFMVFENKDSAERAL-QMNRS--LLG-NREISVSLADK 290 (292)
T ss_dssp GSCEEEEECCSCCC---------CCCEEEEEEESSHHHHHHHG-GGTTE--EET-TEEEEEEECCC
T ss_pred CCCEEEEEEEECCCCCC------CCCEEEEEEECCHHHHHHHH-HHCCC--EEC-CCEEEEEEECC
T ss_conf 58746999974577678------87559999968999999999-74697--889-96899998357
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=1.00 E-value=1 Score=232.77 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=124.3
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEE
Q ss_conf 98859983999999999999997506982699995328999862189999489989999999815679988256491999
Q 002741 424 LQNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLT 503 (885)
Q Consensus 424 ~~~~i~I~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~ 503 (885)
+.++|||+|||+++|+++|+++|++||.|.+|+++++..++.++|||||+|.+.++|.+|+..++ +..+.|+.|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~-----~~~~~g~~i~ 88 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN-----FDVIKGKPVR 88 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHH-----HHHCCCCCCC
T ss_conf 97589993999878799999999861987999873146888756646100089999999999840-----2102783320
Q ss_pred EEECCCHHHHCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
Q ss_conf 99913701111355421002234545301200276668997778999046899999899743104999987655648972
Q 002741 504 VLKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIY 583 (885)
Q Consensus 504 V~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~I~ 583 (885)
+.++........ ....+|||+
T Consensus 89 ~~~~~~~~~~~~-----------------------------------------------------------~~~~~l~v~ 109 (213)
T 4f02_A 89 IMWSQRDPSLRK-----------------------------------------------------------SGVGNIFIK 109 (213)
T ss_dssp EEECCCCTHHHH-----------------------------------------------------------HCTTEEEEE
T ss_pred CCCCCCCCCCCC-----------------------------------------------------------CCCCCCEEC
T ss_conf 023332110101-----------------------------------------------------------345553477
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89955589999999999976320148997389998330557866788896019999927999999999996099998899
Q 002741 584 NLPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGP 663 (885)
Q Consensus 584 NLP~~~te~eL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~g~~~~~~~srG~aFV~F~~~e~A~~Al~~Lng~p~~~g~ 663 (885)
|||.++|+++|+++|+ .||.|..++|+++.. .++|||||+|.+.++|.+|+..|||. .++
T Consensus 110 nl~~~~t~~~l~~~F~---------~~G~i~~~~i~~d~~--------~~~g~~fV~f~~~~~a~~Ai~~lng~--~~~- 169 (213)
T 4f02_A 110 NLDKSIDNKALYDTFS---------AFGNILSCKVVCDEN--------GSKGYGFVHFETQEAAERAIEKMNGM--LLN- 169 (213)
T ss_dssp SCCTTCCHHHHHHHHG---------GGSCEEEEEEEEETT--------EEEEEEEEEESSHHHHHHHHHHHTTC--EET-
T ss_pred CCCCCCHHHHHHHHHH---------HCCCEEEEEEECCCC--------CCCEEEEEEECCHHHHHHHHHHHCCC--EEC-
T ss_conf 7644427999999985---------669967997632589--------88428999868899999999981999--889-
Q ss_pred CCCEEEEEECC
Q ss_conf 99609999720
Q 002741 664 EHRPIVEFAVD 674 (885)
Q Consensus 664 ~~rliV~~A~~ 674 (885)
+++|.|.||..
T Consensus 170 g~~i~V~~a~~ 180 (213)
T 4f02_A 170 DRKVFVGRFKS 180 (213)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEECCC
T ss_conf 98889997578
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=1.00 E-value=1 Score=228.12 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=154.2
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Q ss_conf 89884899847999999989998303798736999810399998202999994599999999999489154981179996
Q 002741 213 KTQKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDW 292 (885)
Q Consensus 213 ~~~~~~I~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~I~V~~ 292 (885)
..+.++|||+|||+++++++|+++|++||.|.+|.|+++..++.++|||||+|.+.++|..|+..+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99975899939998787999999998619879998731468887566461000899999999998402102783320023
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 06998878798644645789999999999998998556777889974225799998840689999997410136789999
Q 002741 293 AVPKNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLP 372 (885)
Q Consensus 293 a~pk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~a~~~~~~~~~~~g~~p 372 (885)
+.+....
T Consensus 92 ~~~~~~~------------------------------------------------------------------------- 98 (213)
T 4f02_A 92 SQRDPSL------------------------------------------------------------------------- 98 (213)
T ss_dssp CCCCTHH-------------------------------------------------------------------------
T ss_pred CCCCCCC-------------------------------------------------------------------------
T ss_conf 3321101-------------------------------------------------------------------------
Q ss_pred CCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCE
Q ss_conf 99873010048888886022210001245333566888998766567888998859983999999999999997506982
Q 002741 373 SLSDDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEV 452 (885)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~i~I~nLp~~~tee~L~~~F~~fG~I 452 (885)
......+|||+|||+.+|+++|+++|+.||.|
T Consensus 99 ------------------------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 130 (213)
T 4f02_A 99 ------------------------------------------------RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI 130 (213)
T ss_dssp ------------------------------------------------HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred ------------------------------------------------CCCCCCCCEECCCCCCCHHHHHHHHHHHCCCE
T ss_conf ------------------------------------------------01345553477764442799999998566996
Q ss_pred EEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCHHHH
Q ss_conf 6999953289998621899994899899999998156799882564919999991370111
Q 002741 453 VSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKKLA 513 (885)
Q Consensus 453 ~~v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V~~a~~k~~~ 513 (885)
..|.++.+. +.++|||||+|.+.++|.+|+..|| |..|+|++|.|.||.++...
T Consensus 131 ~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~ln-----g~~~~g~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 131 LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN-----GMLLNDRKVFVGRFKSRKER 184 (213)
T ss_dssp EEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHT-----TCEETTEECEEEECCCHHHH
T ss_pred EEEEEECCC--CCCCEEEEEEECCHHHHHHHHHHHC-----CCEECCEEEEEEECCCCCCC
T ss_conf 799763258--9884289998688999999999819-----99889988899975787665
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=1.00 E-value=1 Score=219.79 Aligned_cols=79 Identities=23% Similarity=0.406 Sum_probs=39.2
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEEC
Q ss_conf 88489984799999998999830379873699981039999820299999459999999999948915498117999606
Q 002741 215 QKWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAV 294 (885)
Q Consensus 215 ~~~~I~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~I~V~~a~ 294 (885)
..++|||+|||+++++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|..|+.. ++..+.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHC-CCCEECCEEEEEECCC
T ss_conf 787899908899899999999997379879999997299998363599996889999999823-9977998885000055
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=1.00 E-value=1 Score=216.67 Aligned_cols=176 Identities=21% Similarity=0.333 Sum_probs=123.6
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEE
Q ss_conf 88599839999999999999975069826999953289998621899994899899999998156799882564919999
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~i~I~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V 504 (885)
.++|||+|||+++|+++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|.+|+..++ +..|.|+.|.|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~-----~~~~~g~~l~v 102 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN-----SVMLGGRNIKV 102 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS-----SCCCC-CCCEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCC-----CCEECCEEEEE
T ss_conf 8779997899989999999999857997899986658888637669999689999999998746-----77269916898
Q ss_pred EECCCHHHHCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
Q ss_conf 99137011113554210022345453012002766689977789990468999998997431049999876556489728
Q 002741 505 LKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYN 584 (885)
Q Consensus 505 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~I~N 584 (885)
.++........... ..... ....++|||+|
T Consensus 103 ~~~~~~~~~~~~~~----------------------------------------~~~~~----------~~~~~~l~v~n 132 (216)
T 2qfj_A 103 GRPSNIGQAQPIID----------------------------------------QLAEE----------ARAFNRIYVAS 132 (216)
T ss_dssp ECCSCCGGGHHHHH----------------------------------------HHHHH----------HTTSCEEEEEC
T ss_pred ECCCCCCCCCHHHH----------------------------------------HHHCC----------CCCCCEEEEEC
T ss_conf 56888431010234----------------------------------------33002----------67875799937
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99555899999999999763201489973899983305578667888960199999279999999999960999988999
Q 002741 585 LPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPE 664 (885)
Q Consensus 585 LP~~~te~eL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~g~~~~~~~srG~aFV~F~~~e~A~~Al~~Lng~p~~~g~~ 664 (885)
||.++|+++|+++|+ .||.|..++++++..++ .++|||||+|.+.++|.+|+..|||. .++ +
T Consensus 133 lp~~~t~~~l~~~f~---------~~G~v~~v~i~~~~~~g------~~~g~afV~F~~~~~A~~A~~~l~g~--~~~-g 194 (216)
T 2qfj_A 133 VHQDLSDDDIKSVFE---------AFGKIKSATLARDPTTG------KHKGYGFIEYEKAQSSQDAVSSMNLF--DLG-G 194 (216)
T ss_dssp CCTTCCHHHHHHHHT---------TSSCEEEEEEEECTTTC------CEEEEEEEEESSHHHHHHHHHHHTTC--BCS-S
T ss_pred CCCCCCHHHHHHHHH---------CCCCEEEEEEEECCCCC------CCCCEEEEEECCHHHHHHHHHHCCCC--EEC-C
T ss_conf 897588999999974---------36986689987358899------75756999966899999999973687--728-9
Q ss_pred CCEEEEEEC
Q ss_conf 960999972
Q 002741 665 HRPIVEFAV 673 (885)
Q Consensus 665 ~rliV~~A~ 673 (885)
+.|.|.||.
T Consensus 195 ~~i~V~~a~ 203 (216)
T 2qfj_A 195 QYLRVGKAV 203 (216)
T ss_dssp SBCEEEECS
T ss_pred CEEEEEEEC
T ss_conf 589999812
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=1.00 E-value=1 Score=216.50 Aligned_cols=179 Identities=25% Similarity=0.398 Sum_probs=149.0
Q ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEECC
Q ss_conf 84899847999999989998303798736999810399998202999994599999999999489154981179996069
Q 002741 216 KWKLIIRNIPFKAKVNEIKDMFSPVGLVWNVYIPHNTDTGLSKGFAFVKFTCKRDAESAIQKFNGQKFGKRPIAVDWAVP 295 (885)
Q Consensus 216 ~~~I~V~nLp~~~tee~L~~~F~~~G~I~~v~i~~~~~~g~~~g~afV~F~~~e~A~~Al~~lng~~i~g~~I~V~~a~p 295 (885)
.++|||+|||+++++++|+++|+.||.|..|.++++..++.++|||||+|.+.++|..|+..|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEECCCC
T ss_conf 87799978999899999999998579978999866588886376699996899999999987467726991689856888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98878798644645789999999999998998556777889974225799998840689999997410136789999998
Q 002741 296 KNIYSSGGAAAGVQNKGDGNSDSGSDDDLGDDDAETASDDSNSSEKEDLPSNADFDEEVDIARKVLNKLTSTTGSLPSLS 375 (885)
Q Consensus 296 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~a~~~~~~~~~~~g~~p~~~ 375 (885)
.... ....... ..
T Consensus 108 ~~~~------------------------------------------------------~~~~~~~-~~------------ 120 (216)
T 2qfj_A 108 IGQA------------------------------------------------------QPIIDQL-AE------------ 120 (216)
T ss_dssp CGGG------------------------------------------------------HHHHHHH-HH------------
T ss_pred CCCC------------------------------------------------------CHHHHHH-HC------------
T ss_conf 4310------------------------------------------------------1023433-00------------
Q ss_pred CCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 73010048888886022210001245333566888998766567888998859983999999999999997506982699
Q 002741 376 DDSALVKGNKEQDSDKTVNESAKVSDVSKLNSSKSKPKSLKQTEGEDELQNTIFICNLPFDLDNEEVKQRFSAFGEVVSF 455 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~i~I~nLp~~~tee~L~~~F~~fG~I~~v 455 (885)
.....++|||+|||.++++++|+++|+.||.|..+
T Consensus 121 ---------------------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 155 (216)
T 2qfj_A 121 ---------------------------------------------EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSA 155 (216)
T ss_dssp ---------------------------------------------HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEE
T ss_pred ---------------------------------------------CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf ---------------------------------------------26787579993789758899999997436986689
Q ss_pred EEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEEEECCCHH
Q ss_conf 99532899986218999948998999999981567998825649199999913701
Q 002741 456 VPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTVLKALDKK 511 (885)
Q Consensus 456 ~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V~~a~~k~ 511 (885)
.++.+..++.++|||||+|.+.++|.+|+..|+ +..|+|+.|.|.|+.++.
T Consensus 156 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-----g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN-----LFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT-----TCBCSSSBCEEEECSSCS
T ss_pred EEEECCCCCCCCCEEEEEECCHHHHHHHHHHCC-----CCEECCCEEEEEEECCCC
T ss_conf 987358899757569999668999999999736-----877289589999812799
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=1.00 E-value=1 Score=216.05 Aligned_cols=166 Identities=25% Similarity=0.353 Sum_probs=140.7
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCEEECCEEEEE
Q ss_conf 88599839999999999999975069826999953289998621899994899899999998156799882564919999
Q 002741 425 QNTIFICNLPFDLDNEEVKQRFSAFGEVVSFVPVLHQVTKRPKGTGFLKFKTVEAATAAVSASKTTSGLGIFLKGRQLTV 504 (885)
Q Consensus 425 ~~~i~I~nLp~~~tee~L~~~F~~fG~I~~v~i~~~~~~~~~kg~aFV~F~s~e~A~~Ai~~l~~~~~~g~~l~gr~i~V 504 (885)
.++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..++ +..+.|++|.|
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-----~~~~~g~~l~v 77 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN-----GITVRNKRLKV 77 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT-----TCEETTEECEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHCC-----CCEECCCEEEE
T ss_conf 6479995799999999999999824995699998728999506499999799999999998657-----98718968899
Q ss_pred EECCCHHHHCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECC
Q ss_conf 99137011113554210022345453012002766689977789990468999998997431049999876556489728
Q 002741 505 LKALDKKLAHDKEIDKSKNETNDHRNLYLAKEGLILEGTPAAEGVSDDDMSKRQMLHEKKMTKLQSPNFHVSRTRLVIYN 584 (885)
Q Consensus 505 ~~a~~k~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~p~a~~~s~~~~~~r~~~~~~~~~~~~~p~~~~s~~~L~I~N 584 (885)
.|+.+.... ...++|||.|
T Consensus 78 ~~~~~~~~~-------------------------------------------------------------~~~~~l~v~n 96 (168)
T 1b7f_A 78 SYARPGGES-------------------------------------------------------------IKDTNLYVTN 96 (168)
T ss_dssp EECCCCSST-------------------------------------------------------------TTTCEEEEES
T ss_pred EECCCCCCC-------------------------------------------------------------CCCCCEEEEC
T ss_conf 864788666-------------------------------------------------------------7887789928
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99555899999999999763201489973899983305578667888960199999279999999999960999988999
Q 002741 585 LPKSMTEKGLKKLCIDAVVSRASKQKPVIKQIKFLQSLKKGKVDTKHYSRGVAFVEFTEHQHALVALRVLNNNPKTFGPE 664 (885)
Q Consensus 585 LP~~~te~eL~~lF~~~~~~~~~~~~G~I~~v~i~rd~~~g~~~~~~~srG~aFV~F~~~e~A~~Al~~Lng~p~~~g~~ 664 (885)
||..+|+++|+++|+ +||.|..++++++..++ .++|+|||+|.++++|..|+..|||. .+.|.+
T Consensus 97 l~~~~t~~~l~~~f~---------~~G~i~~~~i~~~~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~-~~~g~~ 160 (168)
T 1b7f_A 97 LPRTITDDQLDTIFG---------KYGSIVQKNILRDKLTG------RPRGVAFVRYNKREEAQEAISALNNV-IPEGGS 160 (168)
T ss_dssp CCTTCCHHHHHHHHT---------SSSCEEEEEEEECTTTC------CEEEEEEEEESSHHHHHHHHHHHTTC-CCTTCS
T ss_pred CCCCCCHHHHHHHHH---------CCCCEEEEEEEECCCCC------CCCEEEEEEECCHHHHHHHHHHHCCC-EECCCC
T ss_conf 999788899997652---------47738899998727788------74108999989999999999986697-864897
Q ss_pred CCEEEEEE
Q ss_conf 96099997
Q 002741 665 HRPIVEFA 672 (885)
Q Consensus 665 ~rliV~~A 672 (885)
++|.|.||
T Consensus 161 ~~l~V~~A 168 (168)
T 1b7f_A 161 QPLSVRLA 168 (168)
T ss_dssp SCCEEEEC
T ss_pred EEEEEEEC
T ss_conf 27999939
Done!