Query 002742
Match_columns 885
No_of_seqs 165 out of 256
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 17:28:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002742.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1459-1463//hhsearch_scop/002742hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qpva1 d.129.3.8 (A:1-133) Un 27.6 8.5 0.00062 14.2 0.8 13 284-296 121-133 (133)
2 d2etda1 a.29.9.1 (A:35-183) Hy 7.6 42 0.003 10.0 0.7 33 837-869 93-127 (149)
3 d1q60a_ d.288.1.1 (A:) General 6.1 55 0.004 9.2 1.6 12 683-694 62-73 (99)
4 d2ch1a1 c.67.1.3 (A:2-389) 3-h 5.5 62 0.0045 8.9 1.6 10 279-288 40-49 (388)
5 d2p06a1 a.204.1.3 (A:1-84) Hyp 4.8 73 0.0053 8.4 3.1 24 777-808 30-53 (84)
6 d2fx0a2 a.121.1.1 (A:77-198) H 4.8 73 0.0053 8.4 1.6 13 758-770 67-79 (122)
7 d1azta1 a.66.1.1 (A:88-201) Tr 4.4 84 0.0061 8.1 2.5 10 717-726 56-65 (114)
8 d1v95a_ c.51.1.1 (A:) Nuclear 3.9 96 0.007 7.7 1.5 17 683-699 23-39 (130)
9 d1x6ma_ b.88.1.4 (A:) Glutathi 3.5 1.1E+02 0.0079 7.4 3.3 64 233-305 130-194 (196)
10 d2r85a1 c.30.1.8 (A:1-99) 5-fo 3.3 1.2E+02 0.0087 7.1 1.3 13 289-304 13-25 (99)
No 1
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=27.63 E-value=8.5 Score=14.22 Aligned_cols=13 Identities=54% Similarity=0.698 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 4019999999999
Q 002742 284 GKDLRTLKQILEA 296 (885)
Q Consensus 284 ~KDLRaLKqILea 296 (885)
.+||+.||++|||
T Consensus 121 ~~dL~rlK~l~Ea 133 (133)
T d2qpva1 121 TADLEMLKSLLEA 133 (133)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998639
No 2
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=7.55 E-value=42 Score=9.97 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHC
Q ss_conf 77520149799999--9999999899999999760
Q 002742 837 WTNCSSEITWLVLD--VERLIFKDLISEIVRDETG 869 (885)
Q Consensus 837 W~dl~~Eve~IglE--IErlIfkDLVeEvV~DL~~ 869 (885)
..++..++.++..+ ..|..|.+-|.+.=..+..
T Consensus 93 ~~~l~~~l~~~E~~Ia~aR~~YN~~V~~yN~~i~~ 127 (149)
T d2etda1 93 FRQLMDELAGTENRIAVARRDYNEAVKKYNTAIKK 127 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999989996
No 3
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.08 E-value=55 Score=9.21 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=4.7
Q ss_pred CHHHHHHHHHHC
Q ss_conf 016999999982
Q 002742 683 NHRYISEILLAS 694 (885)
Q Consensus 683 D~~YI~EIL~AS 694 (885)
+..-...||.++
T Consensus 62 gi~~Le~IL~~~ 73 (99)
T d1q60a_ 62 GIPRLEKILRNK 73 (99)
T ss_dssp CHHHHHHHHHTT
T ss_pred CHHHHHHHHHCC
T ss_conf 789999999715
No 4
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Probab=5.54 E-value=62 Score=8.90 Aligned_cols=10 Identities=10% Similarity=-0.001 Sum_probs=4.9
Q ss_pred CCCCCCCCHH
Q ss_conf 0012640199
Q 002742 279 EFKKSGKDLR 288 (885)
Q Consensus 279 ef~~s~KDLR 288 (885)
.+.+=+++++
T Consensus 40 ~~~hr~~ef~ 49 (388)
T d2ch1a1 40 VLSNFHAELF 49 (388)
T ss_dssp CCCTTCHHHH
T ss_pred CCCCCCHHHH
T ss_conf 7887889999
No 5
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.85 E-value=73 Score=8.45 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 77777642356899421489999999986220
Q 002742 777 KKWFSPSKLARGRSSGEQLLRDLCSEVDCLQA 808 (885)
Q Consensus 777 ~PWlss~~~~r~~psGq~LLeEVWseI~~l~~ 808 (885)
.||+-.. .+.|+..+..+++.++.
T Consensus 30 rpwfdfs--------eerllsrlfeemdelre 53 (84)
T d2p06a1 30 RPWFDFS--------EERLLSRLFEEMDELRE 53 (84)
T ss_dssp CHHHHSC--------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC--------HHHHHHHHHHHHHHHHH
T ss_conf 9754552--------98999999999999999
No 6
>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=4.84 E-value=73 Score=8.45 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 6679999999975
Q 002742 758 VFDAVNEILVHKL 770 (885)
Q Consensus 758 LFDlVNEiL~eil 770 (885)
=|+-||-++--|.
T Consensus 67 hF~Svn~tv~~I~ 79 (122)
T d2fx0a2 67 HFFSINHTIHWIT 79 (122)
T ss_dssp CCSCHHHHHHHHH
T ss_pred EEEEHHHHHHHHH
T ss_conf 7531147999988
No 7
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.35 E-value=84 Score=8.09 Aligned_cols=10 Identities=10% Similarity=0.281 Sum_probs=3.8
Q ss_pred CCHHHHHHHC
Q ss_conf 9048999830
Q 002742 717 NPNLFFILEQ 726 (885)
Q Consensus 717 dPsLFe~LEq 726 (885)
.|.+.+.+..
T Consensus 56 ~~e~~~~i~~ 65 (114)
T d1azta1 56 PPEFYEHAKA 65 (114)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
T ss_conf 7999999999
No 8
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.88 E-value=96 Score=7.71 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHCCCCCC
Q ss_conf 01699999998299752
Q 002742 683 NHRYISEILLASGFLRD 699 (885)
Q Consensus 683 D~~YI~EIL~ASGLl~D 699 (885)
.-.||-.-|..-|+.-|
T Consensus 23 YAe~Ie~rL~~~Gl~vd 39 (130)
T d1v95a_ 23 YAESVGRKVRDLGMVVD 39 (130)
T ss_dssp HHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHCCCEEE
T ss_conf 78999999986497788
No 9
>d1x6ma_ b.88.1.4 (A:) Glutathione-dependent formaldehyde-activating enzyme, Gfa {Paracoccus denitrificans [TaxId: 266]}
Probab=3.51 E-value=1.1e+02 Score=7.38 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999865434788-998898876887778887630589999997321001264019999999999975456553
Q 002742 233 IEPAPWKQQEGSK-GQTPASLSQETPTRASNSFLSVYGEIEKRLAQLEFKKSGKDLRTLKQILEAMQKTKEILE 305 (885)
Q Consensus 233 ~E~aPWkq~~~~~-~~~~~~~~~~~~~~~~~~~~svY~eIEkRL~~lef~~s~KDLRaLKqILeamq~k~~~ll 305 (885)
....+|-.+.--. ...|.+-+ ..++--.+|..||+.++|..--.==.||-..|++-+|||.|.|
T Consensus 130 lDd~~~~~P~~hiFvsSki~~~---------~~p~~~~~~~~~~~~~gl~~~d~~sp~lmd~~~~~~a~~~~~~ 194 (196)
T d1x6ma_ 130 SDEDGWSAPEFAAFVSSIIESG---------VDPSRMEAIRARLRELGLEPYDALSPPLMDAIATHIAKRSGAL 194 (196)
T ss_dssp BSCCCCCCCCEEESGGGGGGGT---------CCGGGHHHHHHHHHHHTCEECSSSCHHHHHHHHHHHHHHHSSS
T ss_pred ECCCCCCCCCEEEEEECCCCCC---------CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 2799887986898971234555---------6822426889888865999766669899999999766543756
No 10
>d2r85a1 c.30.1.8 (A:1-99) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Pyrococcus furiosus [TaxId: 2261]}
Probab=3.26 E-value=1.2e+02 Score=7.14 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999997545655
Q 002742 289 TLKQILEAMQKTKEIL 304 (885)
Q Consensus 289 aLKqILeamq~k~~~l 304 (885)
|| |||.. ||++|+
T Consensus 13 AL-qI~~G--AK~EGF 25 (99)
T d2r85a1 13 AL-QILKG--AKDEGF 25 (99)
T ss_dssp HH-HHHHH--HHHTTC
T ss_pred HH-HHHCC--HHHCCC
T ss_conf 98-88552--877399
Done!