BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002743
(885 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 1362 bits (3524), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/804 (82%), Positives = 703/804 (87%)
Query: 1 MWNPLSWVMEXXXXXXXXXXNGGGRDPDWQDFVGIIVLLVINSTISFIEEXXXXXXXXXX 60
MWNPLSWVME NG GR PDWQDFVGII LLVINSTISFIEE
Sbjct: 65 MWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAAL 124
Query: 61 XXXXXPKTKVLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGE 120
PKTKVLRDG+WSEQ+A+ILVPGD++SIKLGDI+PADARLLEGDPLK+DQSALTGE
Sbjct: 125 MAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGE 184
Query: 121 SLPVTKNPYDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIG 180
SLPVTK+P EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIG
Sbjct: 185 SLPVTKHPGQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIG 244
Query: 181 NFCICSIAVGIVAEIIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 240
NFCICSIA+G+V EII+MYP+Q RKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL
Sbjct: 245 NFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL 304
Query: 241 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAAR 300
SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKL+VD+NL+EVF KGVEK+ V+L AA
Sbjct: 305 SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAM 364
Query: 301 ASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWHRASKG 360
ASR ENQDAIDAA+VGMLADPKEARAG+REVHFLPFNPVDKRTALTYID GNWHR SKG
Sbjct: 365 ASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKG 424
Query: 361 APEQILALCNCREDVRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQLVGLLP 420
APEQIL L D+ KKV ++IDK+AERGLRSL VARQ +PEKTKESPGAPW+ VGLLP
Sbjct: 425 APEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLP 484
Query: 421 LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDA 480
LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSS+LLG KDA
Sbjct: 485 LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDA 544
Query: 481 SIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXX 540
++A++PV+ELIEKADGFAGVFPEHKYEIVK+LQERKHI GMTGDGVNDAPALKK
Sbjct: 545 NLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIA 604
Query: 541 XXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIA 600
VLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIV GFMLIA
Sbjct: 605 VADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIA 664
Query: 601 LIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMT 660
LIW+FDFS FMVLIIAILNDGTIMTISKDRVKPSP PDSWKLKEIFATGVVLG Y AIMT
Sbjct: 665 LIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMT 724
Query: 661 VVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPG 720
V+FFW KTDFFSD FGVRS+R E+M A+YLQVSIISQALIFVTRSRSWSF+ERPG
Sbjct: 725 VIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPG 784
Query: 721 LLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYI 780
LL AF+IAQL+AT IAVYANW FA+I G GWGWAGVIWLYS+VTYFPLD+ KF IRYI
Sbjct: 785 ALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYI 844
Query: 781 LSGKAWDTLLENKTAFTTKKDYGK 804
LSGKAW L ENKTAFT KKDYGK
Sbjct: 845 LSGKAWLNLFENKTAFTMKKDYGK 868
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 279/804 (34%), Positives = 424/804 (52%), Gaps = 76/804 (9%)
Query: 28 DWQDFVGIIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPG 87
DW DF I LL++N+ + F++E K VLRDG E +A +VPG
Sbjct: 140 DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPG 199
Query: 88 DVISIKLGDIVPADARLLEGDP-LKIDQSALTGESLPVTKNPYDEVFSGSTCKQGEIEAV 146
D++ ++ G I+PAD R++ D L++DQSALTGESL V K+ D+VF+ S K+GE V
Sbjct: 200 DILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKGDQVFASSAVKRGEAFVV 259
Query: 147 VIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAVGIVAEIIIMYPVQHRK 205
+ ATG +TF G+AA LV++ + GHF +VL IG + + ++ ++I++
Sbjct: 260 ITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILL----ILVIFTLLIVWVSSF-- 313
Query: 206 YRDG-----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMD 260
YR ++ L + I G+P+ +P V++ TMA+G+ L+++ AI ++++AIE +AG++
Sbjct: 314 YRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVE 373
Query: 261 VLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAARASRTENQ--DAIDAAIVGML 318
+LCSDKTGTLT NKL++ GV+ E ++L A A+ + + DAID A + L
Sbjct: 374 ILCSDKTGTLTKNKLSLHDPYT---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSL 430
Query: 319 ADPKEARAGVRE---VHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQILALCN----C 371
A++ + + + F PF+PV K+ G KGAP +L
Sbjct: 431 KYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPI 490
Query: 372 REDVRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQLVGLLPLFDPPRHDSAE 431
E+V + + +FA RG RSLGVAR K G+ W+++G++P DPPRHD+ +
Sbjct: 491 PEEVDQAYKNKVAEFATRGFRSLGVAR-------KRGEGS-WEILGIMPCMDPPRHDTYK 542
Query: 432 TIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELI 491
T+ A LG+++KM+TGD + I +ET R+LG+GTN+Y ++ LG + V + +
Sbjct: 543 TVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIY-NAERLGLGGGGDMPGSEVYDFV 601
Query: 492 EKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXX 551
E ADGFA VFP+HKY +V+ LQ+R ++ MTGDGVNDAP+LKK
Sbjct: 602 EAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSA 661
Query: 552 XXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIY--AVSITIRIVLGFMLIALIWKFDFSP 609
V PGL II A+ TSR IF RM Y +Y A+SI + I LG + L +
Sbjct: 662 ADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEIFLGLWIAILNRSLNIE- 720
Query: 610 FMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLKEIFATGVVLGSYLAIMTVVFFWLMRK 669
+V+ IAI D + I+ D S P W L +++ V+LG LA+ T W+
Sbjct: 721 -LVVFIAIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGT----WITVT 775
Query: 670 TDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRS--WSFIERPGLLLATAF 727
T + G + M L+LQ+S+ LIF+TR+ WS I P L+ A
Sbjct: 776 TMYAQGENG--GIVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSI--PSWQLSGAI 831
Query: 728 VIAQLVATFIAVYANWSFARIEGCGWGW---------AGV-IWLYSLVTYFPLDILKFGI 777
+ ++AT + WGW A V IW++S F + + G+
Sbjct: 832 FLVDILATCFTI-------------WGWFEHSDTSIVAVVRIWIFS----FGIFCIMGGV 874
Query: 778 RYILSGK-AWDTLLENKTAFTTKK 800
YIL +D L+ K+ +K
Sbjct: 875 YYILQDSVGFDNLMHGKSPKGNQK 898
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 162/686 (23%), Positives = 281/686 (40%), Gaps = 121/686 (17%)
Query: 32 FVGIIV--LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDV 89
++G+++ ++++ S+ +E + V+RDG S +A +V GD+
Sbjct: 136 YLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDL 195
Query: 90 ISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCK 139
+ +K GD +PAD R++ K+D S+LTGES P T++P + F + C
Sbjct: 196 VEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCV 255
Query: 140 QGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQ-KVLTAIGNFCICSIAVGIVAEIIIM 198
+G VV+ TG T G+ A L S +VG + I +AV + I+
Sbjct: 256 EGTARGVVVYTGDRTVMGRIATLA-SGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFIL 314
Query: 199 YPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAG 258
+ + + + L+ +++ +P + ++V + + + R++++ + K + A+E +
Sbjct: 315 SLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGS 374
Query: 259 MDVLCSDKTGTLTLNKLTV-----DRNLIEVFAKGVEKE----------------HVILL 297
+CSDKTGTLT N++TV D + E A E + + L
Sbjct: 375 TSTICSDKTGTLTQNRMTVAHMWFDNQIHE--ADTTENQSGAAFDKTSATWSALSRIAAL 432
Query: 298 AARASRTENQDAIDAAIVGMLADPKEAR------------AGVRE----VHFLPFNPVDK 341
RA QD + + D E+ G+R+ + +PFN +K
Sbjct: 433 CNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNK 492
Query: 342 RTALTYID---SDGNWHRASKGAPEQILALCNC----------REDVRKKVHAVIDKFAE 388
+ + S+ + KGAPE+IL C+ +ED+++ +
Sbjct: 493 YQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGG 552
Query: 389 RGLRSLGVARQEIPEKTKESPGAPWQ------------LVGLLPLFDPPRHDSAETIRRA 436
G R LG +PE K + G P+ VGL+ + DPPR + + +
Sbjct: 553 LGERVLGFCHFALPED-KYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKC 611
Query: 437 LNLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNM---------YPSSSLL 474
+ G+ V M+TGD ++ G ET + N+ + +
Sbjct: 612 RSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVH 671
Query: 475 GQD-KDASIAALPVDELIEKADG--FAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPA 531
G D KD S L D+++ FA P+ K IV+ Q + I +TGDGVND+PA
Sbjct: 672 GSDLKDLSTEVL--DDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPA 729
Query: 532 LKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITI 590
LKK +L + + I++ V R IF +K Y ++ I
Sbjct: 730 LKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNI 789
Query: 591 RIVLGFMLIALIWKFDFSPFMVLIIA 616
+ +PF+V II
Sbjct: 790 P--------------EITPFLVFIIG 801
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 160/667 (23%), Positives = 258/667 (38%), Gaps = 125/667 (18%)
Query: 33 VGIIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDVISI 92
+ +I ++V+ + +E + V+RDG + +A LV GD++ +
Sbjct: 144 LALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203
Query: 93 KLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCKQGE 142
K GD VPAD R+L+ K+D S+LTGES P T++P + F + C +G
Sbjct: 204 KGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGT 263
Query: 143 IEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGIVAE 194
+ +V+ TG T G+ A L ++ HF + I +A+ A
Sbjct: 264 AQGLVVNTGDRTIIGRIASLASGVENEKTPIAIEIEHFVDI--------IAGLAILFGAT 315
Query: 195 IIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIE 254
I+ + + + +++ +P + ++V +++ + RL+ + + K + A+E
Sbjct: 316 FFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVE 375
Query: 255 EMAGMDVLCSDKTGTLTLNKLTVDR----NLI-----------EVFAKGVEK----EHVI 295
+ V+CSDKTGTLT N++TV N I + F + E V+
Sbjct: 376 TLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVL 435
Query: 296 LLAARASRTENQDAIDAAIVGMLADPKEA------------RAGVRE----VHFLPFNPV 339
L RA+ QDA+ ++ D E G RE V +PFN
Sbjct: 436 TLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNST 495
Query: 340 DKRTALTYIDSDGNWHR---ASKGAPEQILALCNC----------REDVRKKVHAVIDKF 386
+K + D R KGAPE++L C+ E R+
Sbjct: 496 NKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSL 555
Query: 387 AERGLRSLGVARQEIPEK-----------TKESPGAPWQLVGLLPLFDPPRHDSAETIRR 435
G R LG + + EK P + GL+ + DPPR + + +
Sbjct: 556 GGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 436 ALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAA---LPVD---- 488
G+ V M+TGD K +G+ + G + IAA +PVD
Sbjct: 616 CRTAGIRVIMVTGDHPITAKAIAASVGIISE--------GSETVEDIAARLRVPVDQVNR 667
Query: 489 -------------------ELIEKADG-----FAGVFPEHKYEIVKRLQERKHICGMTGD 524
EL+E FA P+ K IV+ Q I +TGD
Sbjct: 668 KDARACVINGMQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGD 727
Query: 525 GVNDAPALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTI 583
GVND+PALKK +L + + I++ V R IF +K
Sbjct: 728 GVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIA 787
Query: 584 YAVSITI 590
Y ++ I
Sbjct: 788 YTLTKNI 794
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 154/689 (22%), Positives = 281/689 (40%), Gaps = 127/689 (18%)
Query: 32 FVGIIV--LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDV 89
++G+++ +++I S+ +E + V+R+G +A +V GD+
Sbjct: 106 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 165
Query: 90 ISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCK 139
+ +K GD +PAD R++ + K+D S+LTGES P T++P + F + C
Sbjct: 166 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 225
Query: 140 QGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGI 191
+G +V+ TG T G+ A L ++ HF ++T +AV +
Sbjct: 226 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITG--------VAVFL 277
Query: 192 VAEIIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 251
I+ + + + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 278 GVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 337
Query: 252 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DRNLIE--------------VFAKGVEKE 292
A+E + +CSDKTGTLT N++TV D + E A +
Sbjct: 338 AVETLGSTSTICSDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 397
Query: 293 HVILLAARASRTENQ------------DAIDAAIVGML----ADPKEARAGVREVHFLPF 336
+ L RA NQ DA ++A++ + KE R ++ +PF
Sbjct: 398 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 457
Query: 337 NPVDKRTALTYIDSDGNWHR---ASKGAPEQILALCNC----------REDVRKKVHAVI 383
N +K + + + R KGAPE+IL C+ E+++
Sbjct: 458 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 517
Query: 384 DKFAERGLRSLGVAR-----QEIPEKTK------ESPGAPWQLVGLLPLFDPPRHDSAET 432
+ G R LG ++ PE + P VGL+ + DPPR +
Sbjct: 518 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 577
Query: 433 IRRALNLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSSLLGQDKD 479
+ + + G+ V M+TGD ++ G ET + N+ P S + +D
Sbjct: 578 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNI-PVSQVNPRDAK 636
Query: 480 ASI---------AALPVDELIEKADG--FAGVFPEHKYEIVKRLQERKHICGMTGDGVND 528
A + + +D++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 637 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 696
Query: 529 APALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 587
+PA KK +L + + I++ V R IF +K Y ++
Sbjct: 697 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 756
Query: 588 ITIRIVLGFMLIALIWKFDFSPFMVLIIA 616
I + +PF++ IIA
Sbjct: 757 SNIP--------------EITPFLIFIIA 771
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 153/689 (22%), Positives = 280/689 (40%), Gaps = 127/689 (18%)
Query: 32 FVGIIV--LLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQDASILVPGDV 89
++G+++ +++I S+ +E + V+R+G +A +V GD+
Sbjct: 100 YLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDL 159
Query: 90 ISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP----------YDEVFSGSTCK 139
+ +K GD +PAD R++ + K+D S+LTGES P T++P + F + C
Sbjct: 160 VEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCV 219
Query: 140 QGEIEAVVIATGVHTFFGKAAHLVDSTN--------QVGHFQKVLTAIGNFCICSIAVGI 191
+G +V+ TG T G+ A L ++ HF ++T +AV +
Sbjct: 220 EGTARGIVVYTGDRTVMGRIATLASGLEGGQTPIAAEIEHFIHIITG--------VAVFL 271
Query: 192 VAEIIIMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMT 251
I+ + + + + L+ +++ +P + ++V + + + R++++ + K +
Sbjct: 272 GVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLE 331
Query: 252 AIEEMAGMDVLCSDKTGTLTLNKLTV-----DRNLIE--------------VFAKGVEKE 292
A+E + +CS KTGTLT N++TV D + E A +
Sbjct: 332 AVETLGSTSTICSXKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALS 391
Query: 293 HVILLAARASRTENQ------------DAIDAAIVGML----ADPKEARAGVREVHFLPF 336
+ L RA NQ DA ++A++ + KE R ++ +PF
Sbjct: 392 RIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPF 451
Query: 337 NPVDKRTALTYIDSDGNWHR---ASKGAPEQILALCNC----------REDVRKKVHAVI 383
N +K + + + R KGAPE+IL C+ E+++
Sbjct: 452 NSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAY 511
Query: 384 DKFAERGLRSLGVAR-----QEIPEKTK------ESPGAPWQLVGLLPLFDPPRHDSAET 432
+ G R LG ++ PE + P VGL+ + DPPR +
Sbjct: 512 LELGGLGERVLGFCHLFLPDEQFPEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDA 571
Query: 433 IRRALNLGVNVKMITGDQ-------------LAIGKETGRRLGMGTNMYPSSSLLGQDKD 479
+ + + G+ V M+TGD ++ G ET + N+ P S + +D
Sbjct: 572 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNI-PVSQVNPRDAK 630
Query: 480 ASI---------AALPVDELIEKADG--FAGVFPEHKYEIVKRLQERKHICGMTGDGVND 528
A + + +D++++ FA P+ K IV+ Q + I +TGDGVND
Sbjct: 631 ACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVND 690
Query: 529 APALKKXXX-XXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVS 587
+PA KK +L + + I++ V R IF +K Y ++
Sbjct: 691 SPASKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLT 750
Query: 588 ITIRIVLGFMLIALIWKFDFSPFMVLIIA 616
I + +PF++ IIA
Sbjct: 751 SNIP--------------EITPFLIFIIA 765
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 132/297 (44%), Gaps = 44/297 (14%)
Query: 359 KGAPEQILALCN----------CREDVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 406
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 514 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 573
Query: 407 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 456
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 574 EMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 633
Query: 457 TGRRLGMGTNMYPSSSLLGQDKDASIAA--------LPVDELIE---KADGFAGVFPEHK 505
RR+G + G+++D + A LP+ E E +A FA V P HK
Sbjct: 634 ICRRIG----------IFGENEDVADRAYTGREFDDLPLAEQREACRRACCFARVEPTHK 683
Query: 506 YEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVII 565
+IV+ LQ I MTGDGVNDAPALKK VL + S I+
Sbjct: 684 SKIVEYLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIV 743
Query: 566 SAVLTSRAIFQRMKNYTIYAVSITI-RIVLGFMLIALIWKFDFSPFMVLIIAILNDG 621
+AV RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 744 AAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 800
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 35 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 92
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 93 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 137
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 138 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 189
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 190 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 245
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 246 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 282
I + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 332 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 132/291 (45%), Gaps = 32/291 (10%)
Query: 359 KGAPEQILALCN----------CREDVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 406
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 407 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 456
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 457 TGRRLGM-GTNM-YPSSSLLGQDKDASIAALPVDELIE---KADGFAGVFPEHKYEIVKR 511
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 512 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 571
LQ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 572 RAIFQRMKNYTIYAVSITI-RIVLGFMLIALIWKFDFSPFMVLIIAILNDG 621
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 135/277 (48%), Gaps = 31/277 (11%)
Query: 35 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 92
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 93 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 137
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 138 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 189
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 190 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 245
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 246 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 282
I + + ++E + V+CS KTGTLT N+++V + I
Sbjct: 332 IVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFI 368
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 132/291 (45%), Gaps = 32/291 (10%)
Query: 359 KGAPEQILALCN----------CREDVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 406
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 516 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 575
Query: 407 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 456
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 576 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 635
Query: 457 TGRRLGM-GTNM-YPSSSLLGQDKDASIAALPVDELIE---KADGFAGVFPEHKYEIVKR 511
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 636 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 691
Query: 512 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 571
LQ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 692 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 572 RAIFQRMKNYTIYAVSITI-RIVLGFMLIALIWKFDFSPFMVLIIAILNDG 621
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 802
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 35 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 92
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 95 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 154
Query: 93 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 137
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 155 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 214
Query: 138 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 189
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 215 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 272
Query: 190 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 245
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 273 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 332
Query: 246 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 282
I + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 333 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 132/291 (45%), Gaps = 32/291 (10%)
Query: 359 KGAPEQILALCN----------CREDVRKKVHAVIDKFA--ERGLRSLGVARQEIPEKTK 406
KGAPE ++ CN V++K+ +VI ++ LR L +A ++ P K +
Sbjct: 515 KGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKRE 574
Query: 407 E----------SPGAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKE 456
E VG++ + DPPR + +I+ + G+ V MITGD
Sbjct: 575 EMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIA 634
Query: 457 TGRRLGM-GTNM-YPSSSLLGQDKDASIAALPVDELIE---KADGFAGVFPEHKYEIVKR 511
RR+G+ G N + G++ D LP+ E E +A FA V P HK +IV+
Sbjct: 635 ICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVEY 690
Query: 512 LQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTS 571
LQ I MTGDGVNDAPALKK VL + S I++AV
Sbjct: 691 LQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 572 RAIFQRMKNYTIYAVSITI-RIVLGFMLIALIWKFDFSPFMVLIIAILNDG 621
RAI+ MK + Y +S + +V F+ AL P +L + ++ DG
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDG 801
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 136/277 (49%), Gaps = 31/277 (11%)
Query: 35 IIVLLVINSTISFIEEXXXXXXXXXXXXXXXPKTKVLRDGRWSEQ--DASILVPGDVISI 92
I+++L+ N+ + +E KV R R S Q A +VPGD++ +
Sbjct: 94 ILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEV 153
Query: 93 KLGDIVPADARLL--EGDPLKIDQSALTGESLPVTK-------------NPYDEVFSGST 137
+GD VPAD R+L + L++DQS LTGES+ V K + + +FSG+
Sbjct: 154 AVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTN 213
Query: 138 CKQGEIEAVVIATGVHTFFGKAAHLVDSTNQ--------VGHFQKVLTAIGNFCICSIAV 189
G+ +V TGV T GK + +T Q + F + L+ + + IC +AV
Sbjct: 214 IAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISL-IC-VAV 271
Query: 190 GIVAEIIIMYPVQHRKYRDG----IDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGA 245
++ PV + G + L + IP +P V++ +A+G+ R++++ A
Sbjct: 272 WLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNA 331
Query: 246 ITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLI 282
I + + ++E + V+CSDKTGTLT N+++V + I
Sbjct: 332 IVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFI 368
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 212/532 (39%), Gaps = 95/532 (17%)
Query: 70 VLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPY 129
V+RDG+ + GD++ ++ G+ +P D ++EG+ +D+S ++GE +PV K+
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 195
Query: 130 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIA 188
DEVF + G ++ G T + LV D+ Q++ + + I ++
Sbjct: 196 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 255
Query: 189 VGIVAEIIIMYPVQHRKYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 244
+ ++ I Y + H L+ +L+ P +A PT L+V M G+ + G
Sbjct: 256 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 311
Query: 245 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAARASRT 304
+ K A+E + + DKTGTLT K V +L+ + G E+E + L A R+
Sbjct: 312 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT-DLVPL--NGDERELLRLAAIAERRS 368
Query: 305 ENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQ 364
E+ I AIV + AL + G + A E
Sbjct: 369 EHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 400
Query: 365 ILA----LCNCR--ED----VRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQ 414
++A + N R ED V +V ++K ++ VAR +
Sbjct: 401 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN-------------GR 447
Query: 415 LVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLL 474
+ G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 448 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 496
Query: 475 GQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKK 534
+L+ A V P K E VK+LQ K + GDG+NDAPAL +
Sbjct: 497 --------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 536
Query: 535 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 586
VL L +++A+ SR ++K +A+
Sbjct: 537 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 588
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 123/532 (23%), Positives = 212/532 (39%), Gaps = 95/532 (17%)
Query: 70 VLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPY 129
V+RDG+ + GD++ ++ G+ +P D ++EG+ +D+S ++GE +PV K+
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 273
Query: 130 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVLTAIGNFCICSIA 188
DEVF + G ++ G T + LV D+ Q++ + + I ++
Sbjct: 274 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVL 333
Query: 189 VGIVAEIIIMYPVQHRKYRDGIDNLLVLLIGGIP----IAMPTVLSVTMAIGSHRLSQQG 244
+ ++ I Y + H L+ +L+ P +A PT L+V M G+ + G
Sbjct: 334 LVAISAFIYWYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA----ELG 389
Query: 245 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVILLAARASRT 304
+ K A+E + + DKTGTLT K V +L+ + G E+E + L A R+
Sbjct: 390 ILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVT-DLVPL--NGDERELLRLAAIAERRS 446
Query: 305 ENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQ 364
E+ I AIV + AL + G + A E
Sbjct: 447 EHP--IAEAIV--------------------------KKALEHGIELGEPEKVEVIAGEG 478
Query: 365 ILA----LCNCR--ED----VRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESPGAPWQ 414
++A + N R ED V +V ++K ++ VAR +
Sbjct: 479 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN-------------GR 525
Query: 415 LVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLL 474
+ G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 526 VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL----------- 574
Query: 475 GQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKK 534
+L+ A V P K E VK+LQ K + GDG+NDAPAL +
Sbjct: 575 --------------DLV-----IAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQ 614
Query: 535 XXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAV 586
VL L +++A+ SR ++K +A+
Sbjct: 615 ADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWAL 666
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 47/51 (92%)
Query: 835 SYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 885
++ EL+++AE+AKRRAE+AR RELHTLKGHVESVVKLKGLDI+TIQQ Y +
Sbjct: 2 NFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 7/223 (3%)
Query: 69 KVLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNP 128
++ DG E + GD++ ++ G+ +P D + EG +D+S +TGE +PV K
Sbjct: 229 RIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEA 287
Query: 129 YDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLV-DSTNQVGHFQKVL-TAIGNFCICS 186
+V + + G + G T + +V D+ Q++ T G F
Sbjct: 288 SAKVIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQRLADTVSGWFVPAV 347
Query: 187 IAVGIVAEII--IMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQG 244
I V +++ I+ ++ P Y G+ + +LI P A+ +++ +G + +Q G
Sbjct: 348 ILVAVLSFIVWALLGPQPALSY--GLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSG 405
Query: 245 AITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAK 287
+ K A+E M ++ L DKTGTLT + R + + F +
Sbjct: 406 VLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRIVTDDFVE 448
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 30/119 (25%)
Query: 416 VGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLG 475
V LL + DP + + ETI G+ + M+TGD + LG
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------- 592
Query: 476 QDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKK 534
I+K A + PE K IV L+++ I M GDGVNDAPAL K
Sbjct: 593 ---------------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 37/148 (25%)
Query: 391 LRSLGVARQEIPEKTKESPGA------PWQLVGLLPLFDPPRHDSAETIRRALNLGVNVK 444
+R LG+ E EK K+ ++ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCM 164
Query: 445 MITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEH 504
M+TGD + K LG+ D FA V P
Sbjct: 165 MLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPHE 194
Query: 505 KYEIVKRLQERKHICGMTGDGVNDAPAL 532
K E VK +Q+ K++ M GDGVNDAPAL
Sbjct: 195 KAEKVKEVQQ-KYVTAMVGDGVNDAPAL 221
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 37/150 (24%)
Query: 391 LRSLGVARQEIPEKTKESPGA------PWQLVGLLPLFDPPRHDSAETIRRALNLGVNVK 444
+R LG+ E EK K+ ++ G++ L D R +S E I + +G+
Sbjct: 105 IRELGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCM 164
Query: 445 MITGDQLAIGKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEH 504
M+TGD + K LG+ D FA V P
Sbjct: 165 MLTGDNRFVAKWVAEELGLD------------------------------DYFAEVLPHE 194
Query: 505 KYEIVKRLQERKHICGMTGDGVNDAPALKK 534
K E VK +Q+ K++ M GDGVNDAPAL +
Sbjct: 195 KAEKVKEVQQ-KYVTAMVGDGVNDAPALAQ 223
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 856 RELHTLKGHVESVVKLKGLDIDTIQQHYTV 885
RELHTLKGHVE+VVKLKGLDI+TIQQ Y +
Sbjct: 2 RELHTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 80 DASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPYDEVFSGSTCK 139
D ++ GD+I + G P D R++EG + +D+S +TGE++PV K P V +GS +
Sbjct: 38 DVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKPGSTVIAGSINQ 96
Query: 140 QGEIEAVVIATGVHTFFGKAAHLVD 164
G + G T + LV+
Sbjct: 97 NGSLLICATHVGADTTLSQIVKLVE 121
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 70 VLRDGRWSEQDASILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPY 129
V+RDG+ + GD++ ++ G+ +P D ++EG+ +D+S ++GE +PV K+
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSKG 74
Query: 130 DEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVD 164
DEVF + G ++ G T + LV+
Sbjct: 75 DEVFGATINNTGVLKIRATRVGGETLLAQIVKLVE 109
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 130/350 (37%), Gaps = 77/350 (22%)
Query: 236 GSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLIEVFAKGVEKEHVI 295
GS + ++ G + K A+E + + DKTGTLT K V +L+ + G E+E ++
Sbjct: 9 GSRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEV-TDLVPL--NGDERE-LL 64
Query: 296 LLAARASRTENQDAIDAAIVGMLADPKEARAGVREVHFLPFNPVDKRTALTYIDSDGNWH 355
LAA A R Q +A + L H + +K +
Sbjct: 65 RLAAIAERRSEQPIAEAIVKKALE------------HGIELGEPEKVEVI---------- 102
Query: 356 RASKGAPEQILALCNCR--ED----VRKKVHAVIDKFAERGLRSLGVARQEIPEKTKESP 409
A +G + + N R ED V +V ++K ++ VAR
Sbjct: 103 -AGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARN---------- 151
Query: 410 GAPWQLVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYP 469
++ G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 152 ---GRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------ 202
Query: 470 SSSLLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDA 529
+L+ A V P K E VK+LQ K + GDG+NDA
Sbjct: 203 -------------------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDA 237
Query: 530 PALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 579
PAL + VL L +++A+ SR ++K
Sbjct: 238 PALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 31/163 (19%)
Query: 417 GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQ 476
G++ + D + + ++ +G+ V MITGD + R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 477 DKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXX 536
+L+ A V P K E VK+LQ K + GDG+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQAD 244
Query: 537 XXXXXXXXXXXXXXXXXXVLTEPGLSVIISAVLTSRAIFQRMK 579
VL L +++A+ SR ++K
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 497 FAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPAL 532
A V P K E VK+LQ K + GDG+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPAL 99
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 497 FAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVL 556
A V P K E VK+LQ K + GDG+NDAPAL + VL
Sbjct: 186 IAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 557 TEPGLSVIISAVLTSR 572
L +++A+ SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|3TG9|A Chain A, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
pdb|3TG9|B Chain B, The Crystal Structure Of Penicillin Binding Protein From
Bacillus Halodurans
Length = 356
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 325 RAGVREVHFLPFNPVDKRTALTYID-SDGNW 354
RAG+ E + F+ + +TAL YID DG+W
Sbjct: 183 RAGMHESGYFAFDTLPAKTALGYIDLEDGSW 213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,995,540
Number of Sequences: 62578
Number of extensions: 936764
Number of successful extensions: 2186
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2078
Number of HSP's gapped (non-prelim): 64
length of query: 885
length of database: 14,973,337
effective HSP length: 107
effective length of query: 778
effective length of database: 8,277,491
effective search space: 6439887998
effective search space used: 6439887998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)