Query 002744
Match_columns 885
No_of_seqs 363 out of 2001
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1002 Nucleotide excision re 100.0 3E-117 6E-122 921.4 42.1 623 170-885 163-791 (791)
2 KOG0387 Transcription-coupled 100.0 1.1E-92 2.3E-97 778.7 40.2 483 179-884 193-698 (923)
3 KOG0385 Chromatin remodeling c 100.0 7.6E-93 1.7E-97 775.2 36.7 458 184-867 159-623 (971)
4 KOG0388 SNF2 family DNA-depend 100.0 2E-85 4.4E-90 706.6 30.9 547 171-867 544-1178(1185)
5 KOG0389 SNF2 family DNA-depend 100.0 1.9E-85 4.2E-90 720.2 29.0 512 184-869 390-914 (941)
6 KOG0384 Chromodomain-helicase 100.0 6.7E-84 1.5E-88 737.0 32.8 471 190-883 369-856 (1373)
7 KOG0392 SNF2 family DNA-depend 100.0 6E-83 1.3E-87 724.7 34.3 507 180-884 964-1495(1549)
8 PLN03142 Probable chromatin-re 100.0 1.9E-81 4.1E-86 747.5 44.8 475 182-884 160-641 (1033)
9 KOG4439 RNA polymerase II tran 100.0 1E-81 2.3E-86 681.5 35.1 541 181-884 315-900 (901)
10 KOG0391 SNF2 family DNA-depend 100.0 1.1E-81 2.4E-86 704.9 32.8 568 181-884 605-1428(1958)
11 KOG0386 Chromatin remodeling c 100.0 5.4E-75 1.2E-79 652.1 19.2 466 181-864 383-859 (1157)
12 KOG0390 DNA repair protein, SN 100.0 6.8E-71 1.5E-75 626.5 41.4 497 185-884 232-748 (776)
13 KOG1015 Transcription regulato 100.0 1.3E-69 2.8E-74 598.9 34.4 584 178-884 655-1317(1567)
14 KOG1001 Helicase-like transcri 100.0 3.2E-68 6.9E-73 611.0 26.8 529 194-866 135-673 (674)
15 COG0553 HepA Superfamily II DN 100.0 9E-61 2E-65 597.5 38.9 505 186-884 333-864 (866)
16 KOG1000 Chromatin remodeling p 100.0 4.8E-56 1E-60 464.6 29.9 426 185-864 192-624 (689)
17 PRK04914 ATP-dependent helicas 100.0 4.6E-55 1E-59 520.5 33.0 469 187-882 148-644 (956)
18 KOG1016 Predicted DNA helicase 100.0 3.3E-55 7.1E-60 475.9 22.9 584 185-883 248-888 (1387)
19 KOG0298 DEAD box-containing he 100.0 3.5E-45 7.6E-50 421.6 19.0 300 213-607 376-690 (1394)
20 KOG0383 Predicted helicase [Ge 100.0 1.4E-44 3.1E-49 408.4 7.6 398 190-797 294-696 (696)
21 PF00176 SNF2_N: SNF2 family N 100.0 3.1E-41 6.6E-46 367.6 20.1 289 195-608 1-299 (299)
22 TIGR00603 rad25 DNA repair hel 100.0 3.2E-39 6.9E-44 372.2 36.9 355 189-851 253-615 (732)
23 PRK13766 Hef nuclease; Provisi 100.0 1.1E-33 2.3E-38 346.0 38.5 144 712-860 345-496 (773)
24 COG1111 MPH1 ERCC4-like helica 100.0 2.8E-32 6.1E-37 290.7 34.3 464 190-864 14-502 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 3E-28 6.4E-33 275.4 31.8 370 187-855 32-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 2.7E-28 5.8E-33 281.5 31.7 125 715-842 329-454 (501)
27 KOG0354 DEAD-box like helicase 99.9 2E-24 4.4E-29 244.4 35.8 146 712-865 393-550 (746)
28 KOG1123 RNA polymerase II tran 99.9 5.5E-25 1.2E-29 231.9 20.7 352 190-849 301-659 (776)
29 PTZ00110 helicase; Provisional 99.9 1.5E-23 3.2E-28 243.8 30.8 125 714-844 361-485 (545)
30 PRK10590 ATP-dependent RNA hel 99.9 3.9E-23 8.4E-28 236.8 30.6 110 730-843 243-352 (456)
31 PRK11192 ATP-dependent RNA hel 99.9 3.7E-23 8.1E-28 236.5 30.3 116 715-836 232-347 (434)
32 PRK11776 ATP-dependent RNA hel 99.9 9.5E-23 2.1E-27 234.6 31.2 121 715-843 229-349 (460)
33 PRK04837 ATP-dependent RNA hel 99.9 3.6E-23 7.8E-28 235.5 26.7 122 714-843 241-362 (423)
34 TIGR00614 recQ_fam ATP-depende 99.9 5E-23 1.1E-27 236.6 26.1 105 731-837 225-329 (470)
35 PRK01297 ATP-dependent RNA hel 99.9 1.2E-22 2.6E-27 234.4 28.9 121 715-843 322-442 (475)
36 PRK04537 ATP-dependent RNA hel 99.9 1.5E-22 3.2E-27 236.2 29.5 120 715-842 244-363 (572)
37 PLN00206 DEAD-box ATP-dependen 99.9 2.9E-22 6.3E-27 232.4 30.0 122 716-843 353-475 (518)
38 PRK11634 ATP-dependent RNA hel 99.9 1.3E-21 2.8E-26 229.4 31.8 115 714-834 231-345 (629)
39 PRK11448 hsdR type I restricti 99.9 4.5E-22 9.8E-27 244.0 28.2 107 731-840 697-815 (1123)
40 PTZ00424 helicase 45; Provisio 99.9 1.3E-21 2.7E-26 222.2 28.4 112 731-846 266-377 (401)
41 PRK11057 ATP-dependent DNA hel 99.9 1E-21 2.2E-26 231.6 28.3 102 731-834 235-336 (607)
42 KOG0331 ATP-dependent RNA heli 99.9 1.3E-21 2.7E-26 215.7 26.3 119 713-834 323-441 (519)
43 TIGR01389 recQ ATP-dependent D 99.9 1.4E-21 2.9E-26 231.4 28.1 102 732-835 224-325 (591)
44 TIGR00643 recG ATP-dependent D 99.9 4.5E-20 9.7E-25 218.7 33.7 88 746-835 470-560 (630)
45 PLN03137 ATP-dependent DNA hel 99.9 1.6E-20 3.5E-25 222.5 27.2 104 732-837 680-783 (1195)
46 PRK10917 ATP-dependent DNA hel 99.9 7.9E-20 1.7E-24 217.9 32.0 101 732-834 471-582 (681)
47 TIGR00580 mfd transcription-re 99.9 1.2E-19 2.7E-24 218.8 30.0 107 732-842 660-769 (926)
48 KOG0330 ATP-dependent RNA heli 99.9 1.7E-20 3.7E-25 193.4 19.2 124 715-846 287-410 (476)
49 TIGR03817 DECH_helic helicase/ 99.8 1.9E-19 4.2E-24 215.4 28.0 116 732-851 271-394 (742)
50 PRK10689 transcription-repair 99.8 2.9E-19 6.3E-24 220.2 29.6 105 732-840 809-916 (1147)
51 COG0513 SrmB Superfamily II DN 99.8 3.1E-18 6.8E-23 197.4 28.7 134 714-856 259-392 (513)
52 PRK02362 ski2-like helicase; P 99.8 3.3E-18 7.3E-23 207.1 28.9 107 732-840 243-394 (737)
53 PRK13767 ATP-dependent helicas 99.8 3.8E-18 8.2E-23 208.5 28.9 105 732-838 284-395 (876)
54 PRK01172 ski2-like helicase; P 99.8 3.5E-17 7.7E-22 196.9 29.3 103 191-319 22-125 (674)
55 TIGR03714 secA2 accessory Sec 99.8 6.6E-17 1.4E-21 187.8 29.8 114 713-833 407-529 (762)
56 KOG0333 U5 snRNP-like RNA heli 99.8 3.5E-17 7.5E-22 174.9 23.1 127 712-846 501-627 (673)
57 TIGR00348 hsdR type I site-spe 99.8 5.8E-17 1.3E-21 192.5 27.4 107 732-840 514-648 (667)
58 KOG0328 Predicted ATP-dependen 99.8 3.2E-17 7E-22 162.2 20.6 110 733-846 267-376 (400)
59 TIGR01587 cas3_core CRISPR-ass 99.8 1E-16 2.2E-21 179.0 26.7 107 732-843 222-338 (358)
60 COG1200 RecG RecG-like helicas 99.8 9.2E-17 2E-21 180.0 25.2 102 756-866 507-609 (677)
61 PRK00254 ski2-like helicase; P 99.8 2.8E-16 6E-21 190.0 30.3 105 190-319 22-128 (720)
62 TIGR02621 cas3_GSU0051 CRISPR- 99.7 5.5E-16 1.2E-20 182.0 29.2 102 732-839 272-390 (844)
63 COG4096 HsdR Type I site-speci 99.7 9.8E-17 2.1E-21 181.8 20.9 165 183-445 157-322 (875)
64 PRK09200 preprotein translocas 99.7 1.9E-15 4.2E-20 177.5 31.3 129 713-852 411-547 (790)
65 TIGR00963 secA preprotein tran 99.7 3.5E-16 7.5E-21 180.6 21.2 118 713-836 388-512 (745)
66 KOG0335 ATP-dependent RNA heli 99.7 1.1E-16 2.3E-21 173.8 15.6 123 713-837 313-440 (482)
67 KOG0350 DEAD-box ATP-dependent 99.7 3.3E-16 7.1E-21 166.7 18.4 119 716-842 417-539 (620)
68 PRK09401 reverse gyrase; Revie 99.7 2.6E-15 5.5E-20 186.0 26.7 104 714-828 315-431 (1176)
69 PRK12898 secA preprotein trans 99.7 5.9E-15 1.3E-19 169.8 27.5 130 713-853 456-593 (656)
70 KOG0348 ATP-dependent RNA heli 99.7 1E-14 2.2E-19 156.4 26.0 134 713-851 406-561 (708)
71 COG0514 RecQ Superfamily II DN 99.7 1.8E-15 4E-20 170.5 21.4 109 732-844 230-338 (590)
72 TIGR03158 cas3_cyano CRISPR-as 99.7 1.4E-14 3.1E-19 160.2 25.6 87 729-826 269-357 (357)
73 KOG0336 ATP-dependent RNA heli 99.7 5.6E-15 1.2E-19 153.3 20.2 116 713-833 449-564 (629)
74 PHA02653 RNA helicase NPH-II; 99.7 2.1E-14 4.6E-19 168.0 27.8 110 732-847 395-518 (675)
75 PRK05580 primosome assembly pr 99.7 2.4E-14 5.2E-19 170.4 28.2 94 745-840 439-548 (679)
76 cd00079 HELICc Helicase superf 99.7 6.1E-16 1.3E-20 146.0 11.3 121 713-837 11-131 (131)
77 KOG0343 RNA Helicase [RNA proc 99.6 1.5E-14 3.3E-19 155.6 22.4 136 713-857 298-435 (758)
78 KOG4284 DEAD box protein [Tran 99.6 5.1E-15 1.1E-19 161.5 18.5 107 727-836 267-373 (980)
79 COG1201 Lhr Lhr-like helicases 99.6 4.9E-14 1.1E-18 164.8 26.9 111 733-849 254-366 (814)
80 PRK09751 putative ATP-dependen 99.6 2.9E-14 6.3E-19 177.2 26.0 95 732-828 244-371 (1490)
81 KOG0340 ATP-dependent RNA heli 99.6 4.8E-14 1E-18 144.5 22.3 117 714-833 237-353 (442)
82 KOG0342 ATP-dependent RNA heli 99.6 1.6E-14 3.4E-19 154.3 18.3 115 714-833 315-429 (543)
83 PF04851 ResIII: Type III rest 99.6 1.7E-15 3.6E-20 152.1 10.4 165 190-444 2-183 (184)
84 TIGR01054 rgy reverse gyrase. 99.6 7E-14 1.5E-18 173.6 26.1 86 717-812 316-408 (1171)
85 COG1204 Superfamily II helicas 99.6 4.7E-14 1E-18 167.3 23.1 106 191-320 31-137 (766)
86 KOG0345 ATP-dependent RNA heli 99.6 2.2E-13 4.9E-18 144.5 24.8 118 713-836 240-359 (567)
87 KOG0338 ATP-dependent RNA heli 99.6 2.8E-14 6.1E-19 152.2 17.6 107 733-843 427-533 (691)
88 KOG0339 ATP-dependent RNA heli 99.6 6.2E-14 1.4E-18 149.3 20.1 127 713-846 452-578 (731)
89 TIGR00595 priA primosomal prot 99.6 6.6E-14 1.4E-18 160.7 21.5 92 748-841 274-381 (505)
90 COG4889 Predicted helicase [Ge 99.6 2.6E-14 5.7E-19 160.3 17.4 75 758-833 501-577 (1518)
91 COG1205 Distinct helicase fami 99.6 2.4E-13 5.2E-18 163.7 24.6 117 732-852 306-431 (851)
92 TIGR01970 DEAH_box_HrpB ATP-de 99.6 6E-13 1.3E-17 159.6 26.4 108 732-844 209-337 (819)
93 KOG0347 RNA helicase [RNA proc 99.5 1.1E-13 2.3E-18 149.2 16.0 101 733-836 464-564 (731)
94 KOG0341 DEAD-box protein abstr 99.5 3.4E-14 7.3E-19 146.5 11.7 130 713-851 407-536 (610)
95 PF00271 Helicase_C: Helicase 99.5 9.3E-15 2E-19 124.3 6.4 78 750-829 1-78 (78)
96 KOG0326 ATP-dependent RNA heli 99.5 7.8E-14 1.7E-18 140.7 13.6 121 713-841 307-427 (459)
97 PRK14701 reverse gyrase; Provi 99.5 1.1E-12 2.3E-17 166.4 26.3 104 717-831 320-446 (1638)
98 PRK13104 secA preprotein trans 99.5 3.4E-12 7.4E-17 149.9 28.3 119 713-837 427-583 (896)
99 KOG0332 ATP-dependent RNA heli 99.5 9.5E-13 2.1E-17 135.9 19.8 126 713-846 315-447 (477)
100 PRK12906 secA preprotein trans 99.5 2E-12 4.3E-17 151.2 24.7 117 713-835 423-547 (796)
101 PRK11664 ATP-dependent RNA hel 99.5 1.4E-12 3.1E-17 156.8 23.4 109 732-845 212-341 (812)
102 smart00487 DEXDc DEAD-like hel 99.5 4.9E-13 1.1E-17 135.6 14.5 162 189-447 6-174 (201)
103 PRK12904 preprotein translocas 99.5 8.2E-12 1.8E-16 146.7 26.4 119 713-837 413-569 (830)
104 COG1197 Mfd Transcription-repa 99.5 8.7E-12 1.9E-16 148.2 26.7 106 733-842 804-912 (1139)
105 COG1202 Superfamily II helicas 99.5 2.2E-12 4.8E-17 139.8 19.8 108 732-842 440-552 (830)
106 cd00046 DEXDc DEAD-like helica 99.5 6.5E-13 1.4E-17 126.5 13.4 137 213-443 2-144 (144)
107 PRK09694 helicase Cas3; Provis 99.5 7.3E-12 1.6E-16 150.4 24.7 97 732-831 560-665 (878)
108 KOG0344 ATP-dependent RNA heli 99.4 2.1E-12 4.6E-17 141.5 17.7 119 713-837 372-492 (593)
109 smart00490 HELICc helicase sup 99.4 5.7E-13 1.2E-17 114.2 8.0 81 747-829 2-82 (82)
110 PRK13107 preprotein translocas 99.4 6.1E-11 1.3E-15 139.0 27.1 118 713-836 432-586 (908)
111 KOG0334 RNA helicase [RNA proc 99.4 3E-11 6.5E-16 141.0 20.3 123 713-842 597-719 (997)
112 TIGR00631 uvrb excinuclease AB 99.3 8.5E-10 1.8E-14 130.1 32.0 133 713-852 425-564 (655)
113 COG4098 comFA Superfamily II D 99.3 1.5E-09 3.3E-14 111.6 27.8 120 718-843 293-418 (441)
114 PRK12900 secA preprotein trans 99.3 8E-10 1.7E-14 130.3 28.6 116 713-834 581-704 (1025)
115 KOG0346 RNA helicase [RNA proc 99.3 9.2E-11 2E-15 123.8 18.3 107 733-842 269-409 (569)
116 TIGR01967 DEAH_box_HrpA ATP-de 99.3 2.6E-10 5.6E-15 140.5 23.9 121 718-846 266-407 (1283)
117 cd00268 DEADc DEAD-box helicas 99.3 5.7E-11 1.2E-15 121.4 14.6 111 191-320 21-134 (203)
118 PRK05298 excinuclease ABC subu 99.3 4.5E-09 9.8E-14 125.0 31.8 123 713-842 429-556 (652)
119 COG0556 UvrB Helicase subunit 99.2 1.5E-08 3.3E-13 110.2 31.9 151 714-869 430-587 (663)
120 KOG0327 Translation initiation 99.2 9.3E-11 2E-15 122.6 13.9 120 715-844 252-371 (397)
121 PRK11131 ATP-dependent RNA hel 99.2 7.3E-10 1.6E-14 136.1 23.9 109 731-846 285-414 (1294)
122 PRK12326 preprotein translocas 99.2 4.8E-09 1E-13 120.5 28.1 119 713-837 410-543 (764)
123 KOG0351 ATP-dependent DNA heli 99.2 1.3E-10 2.8E-15 139.2 16.0 107 729-837 482-588 (941)
124 PF00270 DEAD: DEAD/DEAH box h 99.2 9.6E-11 2.1E-15 115.8 12.5 106 194-321 2-111 (169)
125 KOG0952 DNA/RNA helicase MER3/ 99.2 5E-09 1.1E-13 121.7 26.2 96 211-316 126-222 (1230)
126 KOG0337 ATP-dependent RNA heli 99.2 4.4E-10 9.6E-15 118.2 14.6 124 713-843 245-368 (529)
127 PRK12899 secA preprotein trans 99.1 4.7E-08 1E-12 115.4 31.2 117 713-836 551-676 (970)
128 COG1203 CRISPR-associated heli 99.1 9.2E-09 2E-13 124.1 23.3 124 731-858 439-567 (733)
129 KOG0352 ATP-dependent DNA heli 99.0 6.7E-09 1.5E-13 109.3 16.5 101 735-837 258-358 (641)
130 COG1198 PriA Primosomal protei 99.0 3.3E-08 7.1E-13 115.7 21.3 107 190-319 197-310 (730)
131 PRK13103 secA preprotein trans 99.0 1E-07 2.2E-12 112.6 25.1 119 713-837 432-587 (913)
132 PRK12903 secA preprotein trans 98.9 1.4E-07 3E-12 110.2 24.9 119 713-837 409-535 (925)
133 KOG0353 ATP-dependent DNA heli 98.9 6.2E-08 1.4E-12 100.3 19.6 88 732-821 317-404 (695)
134 COG1110 Reverse gyrase [DNA re 98.9 4.6E-07 1E-11 105.9 26.9 87 715-812 323-416 (1187)
135 KOG0951 RNA helicase BRR2, DEA 98.8 1.5E-07 3.3E-12 111.1 20.5 95 213-316 327-422 (1674)
136 PF11496 HDA2-3: Class II hist 98.8 1.7E-07 3.6E-12 99.7 19.2 221 549-854 5-256 (297)
137 KOG0947 Cytoplasmic exosomal R 98.8 3.6E-07 7.9E-12 105.4 21.2 97 190-320 296-394 (1248)
138 TIGR00596 rad1 DNA repair prot 98.8 2.2E-07 4.8E-12 111.2 19.3 44 711-754 267-317 (814)
139 PF13872 AAA_34: P-loop contai 98.7 1.8E-07 3.9E-12 97.4 14.5 111 190-320 36-151 (303)
140 COG0610 Type I site-specific r 98.7 1.6E-06 3.4E-11 107.0 22.4 70 769-840 578-650 (962)
141 KOG1513 Nuclear helicase MOP-3 98.7 6.2E-06 1.3E-10 93.4 24.5 91 775-867 850-948 (1300)
142 COG4581 Superfamily II RNA hel 98.6 9.9E-06 2.1E-10 97.5 25.3 165 188-459 116-284 (1041)
143 PRK12901 secA preprotein trans 98.5 2E-05 4.3E-10 94.0 25.4 117 713-836 611-736 (1112)
144 CHL00122 secA preprotein trans 98.5 2.8E-05 6.1E-10 91.9 26.0 84 713-801 407-491 (870)
145 PRK12902 secA preprotein trans 98.4 3.3E-05 7.1E-10 91.2 23.5 84 713-801 422-506 (939)
146 KOG0949 Predicted helicase, DE 98.3 2.2E-05 4.7E-10 91.4 18.7 69 763-833 969-1038(1330)
147 KOG0329 ATP-dependent RNA heli 98.3 6.9E-06 1.5E-10 81.4 12.7 45 788-832 302-346 (387)
148 PF13871 Helicase_C_4: Helicas 98.3 1.2E-06 2.6E-11 91.2 7.8 97 773-871 52-156 (278)
149 KOG0950 DNA polymerase theta/e 98.3 4.2E-05 9.2E-10 89.5 20.6 107 191-320 223-330 (1008)
150 PF07652 Flavi_DEAD: Flaviviru 98.2 4.4E-06 9.6E-11 77.3 7.8 80 214-320 7-87 (148)
151 KOG0349 Putative DEAD-box RNA 98.1 6.9E-06 1.5E-10 87.1 8.8 96 731-828 504-602 (725)
152 KOG0948 Nuclear exosomal RNA h 98.0 0.00015 3.2E-09 82.5 16.6 99 189-320 127-226 (1041)
153 PRK15483 type III restriction- 98.0 5.3E-05 1.1E-09 91.2 14.0 90 213-319 61-176 (986)
154 COG0653 SecA Preprotein transl 97.9 0.00089 1.9E-08 79.1 21.5 121 713-840 412-543 (822)
155 KOG0920 ATP-dependent RNA heli 97.8 0.0025 5.4E-08 76.6 22.4 125 715-844 396-545 (924)
156 KOG0922 DEAH-box RNA helicase 97.8 0.0042 9.1E-08 70.9 22.8 112 732-846 258-393 (674)
157 KOG0953 Mitochondrial RNA heli 97.7 0.00019 4.2E-09 79.2 9.6 100 730-833 356-466 (700)
158 PF02399 Herpes_ori_bp: Origin 97.6 0.011 2.5E-07 69.7 24.2 97 732-837 282-384 (824)
159 smart00488 DEXDc2 DEAD-like he 97.6 0.00059 1.3E-08 73.3 12.6 76 191-280 8-84 (289)
160 smart00489 DEXDc3 DEAD-like he 97.6 0.00059 1.3E-08 73.3 12.6 76 191-280 8-84 (289)
161 COG1643 HrpA HrpA-like helicas 97.6 0.0025 5.5E-08 76.7 18.6 109 732-846 259-390 (845)
162 KOG0924 mRNA splicing factor A 97.5 0.0047 1E-07 69.9 17.8 92 756-850 597-704 (1042)
163 TIGR01407 dinG_rel DnaQ family 97.4 0.001 2.2E-08 82.6 13.1 115 716-836 659-809 (850)
164 TIGR03117 cas_csf4 CRISPR-asso 97.3 0.0026 5.7E-08 74.6 13.1 98 715-816 454-564 (636)
165 PF13086 AAA_11: AAA domain; P 97.2 0.002 4.4E-08 66.9 11.2 72 192-279 2-75 (236)
166 KOG1802 RNA helicase nonsense 97.2 0.0013 2.8E-08 74.2 9.1 80 191-297 410-490 (935)
167 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.0046 1E-07 64.8 11.9 103 191-322 77-183 (266)
168 PF15227 zf-C3HC4_4: zinc fing 96.9 0.00042 9E-09 50.4 1.6 40 631-670 1-42 (42)
169 TIGR02562 cas3_yersinia CRISPR 96.9 0.2 4.4E-06 61.2 24.2 47 783-832 837-883 (1110)
170 PLN03208 E3 ubiquitin-protein 96.8 0.00075 1.6E-08 65.7 2.8 51 628-678 18-82 (193)
171 TIGR00604 rad3 DNA repair heli 96.8 0.0029 6.4E-08 76.9 8.2 118 716-836 507-669 (705)
172 KOG0823 Predicted E3 ubiquitin 96.7 0.00063 1.4E-08 67.3 1.7 56 625-680 44-100 (230)
173 PF02562 PhoH: PhoH-like prote 96.6 0.0079 1.7E-07 60.4 8.5 44 191-239 4-47 (205)
174 PRK10536 hypothetical protein; 96.6 0.0081 1.7E-07 62.1 8.6 40 407-448 178-217 (262)
175 COG3587 Restriction endonuclea 96.5 0.0068 1.5E-07 70.8 8.4 45 784-828 483-527 (985)
176 KOG0925 mRNA splicing factor A 96.4 0.038 8.2E-07 60.6 12.6 60 785-846 314-390 (699)
177 KOG0923 mRNA splicing factor A 96.4 0.078 1.7E-06 60.4 15.4 76 759-842 509-605 (902)
178 TIGR01407 dinG_rel DnaQ family 96.4 0.019 4.1E-07 71.5 12.0 85 191-296 245-334 (850)
179 PRK07246 bifunctional ATP-depe 96.3 0.033 7.1E-07 68.6 13.1 114 716-836 633-778 (820)
180 PF13923 zf-C3HC4_2: Zinc fing 96.3 0.0019 4.2E-08 46.2 1.3 38 631-670 1-39 (39)
181 COG1199 DinG Rad3-related DNA 96.2 0.031 6.6E-07 67.9 12.2 116 716-836 464-612 (654)
182 PF13307 Helicase_C_2: Helicas 96.2 0.014 3E-07 57.3 7.2 99 732-836 9-145 (167)
183 PF00097 zf-C3HC4: Zinc finger 96.1 0.0026 5.7E-08 46.1 1.4 40 631-670 1-41 (41)
184 KOG0317 Predicted E3 ubiquitin 96.1 0.0032 7E-08 64.3 2.3 51 625-677 236-286 (293)
185 KOG1132 Helicase of the DEAD s 96.1 0.045 9.7E-07 64.6 11.7 98 184-282 14-135 (945)
186 PRK08074 bifunctional ATP-depe 96.1 0.05 1.1E-06 68.2 13.1 118 716-836 737-888 (928)
187 PRK14873 primosome assembly pr 96.1 0.019 4E-07 68.5 8.8 78 220-318 169-253 (665)
188 smart00504 Ubox Modified RING 95.9 0.005 1.1E-07 49.4 2.3 45 630-676 3-47 (63)
189 PRK08074 bifunctional ATP-depe 95.8 0.054 1.2E-06 67.9 11.8 86 191-296 257-347 (928)
190 KOG1803 DNA helicase [Replicat 95.8 0.031 6.7E-07 63.3 8.5 68 188-278 182-250 (649)
191 KOG4150 Predicted ATP-dependen 95.7 0.044 9.5E-07 61.0 9.1 116 712-831 507-630 (1034)
192 TIGR00599 rad18 DNA repair pro 95.7 0.0059 1.3E-07 67.1 2.4 46 628-675 26-71 (397)
193 KOG0978 E3 ubiquitin ligase in 95.6 0.0039 8.4E-08 72.3 0.9 49 629-678 644-692 (698)
194 KOG2164 Predicted E3 ubiquitin 95.6 0.0051 1.1E-07 67.9 1.5 49 628-676 186-237 (513)
195 PF13920 zf-C3HC4_3: Zinc fing 95.6 0.0057 1.2E-07 46.5 1.4 45 629-675 3-48 (50)
196 TIGR00376 DNA helicase, putati 95.5 0.13 2.9E-06 61.5 13.2 78 190-294 156-234 (637)
197 KOG0320 Predicted E3 ubiquitin 95.5 0.0071 1.5E-07 57.3 1.7 48 626-675 129-178 (187)
198 PF13401 AAA_22: AAA domain; P 95.3 0.019 4E-07 53.7 4.3 35 407-443 89-125 (131)
199 PF09848 DUF2075: Uncharacteri 95.3 0.062 1.4E-06 59.7 9.1 48 215-279 5-53 (352)
200 PHA02929 N1R/p28-like protein; 95.2 0.011 2.3E-07 60.5 2.2 46 628-675 174-227 (238)
201 PF14835 zf-RING_6: zf-RING of 94.9 0.019 4.2E-07 44.9 2.3 42 630-675 9-51 (65)
202 PF14634 zf-RING_5: zinc-RING 94.9 0.022 4.8E-07 41.9 2.6 40 631-672 2-44 (44)
203 TIGR00604 rad3 DNA repair heli 94.8 0.19 4.1E-06 61.4 12.0 73 191-280 10-83 (705)
204 smart00492 HELICc3 helicase su 94.7 0.19 4.2E-06 47.6 9.2 46 767-813 32-79 (141)
205 PRK11747 dinG ATP-dependent DN 94.7 0.22 4.7E-06 60.5 11.9 92 715-813 519-616 (697)
206 COG5432 RAD18 RING-finger-cont 94.6 0.016 3.6E-07 58.6 1.7 46 628-675 25-70 (391)
207 COG5574 PEX10 RING-finger-cont 94.6 0.016 3.4E-07 58.7 1.4 48 628-675 215-262 (271)
208 PHA02926 zinc finger-like prot 94.5 0.022 4.7E-07 56.2 2.2 48 628-675 170-230 (242)
209 PF13445 zf-RING_UBOX: RING-ty 94.3 0.013 2.8E-07 42.7 0.2 37 631-668 1-43 (43)
210 TIGR01447 recD exodeoxyribonuc 93.9 0.3 6.5E-06 57.7 10.4 40 405-446 259-298 (586)
211 PRK07246 bifunctional ATP-depe 93.9 0.45 9.8E-06 58.7 12.3 84 191-295 245-330 (820)
212 PRK10875 recD exonuclease V su 93.8 0.17 3.7E-06 59.9 8.2 40 405-446 265-304 (615)
213 PF06862 DUF1253: Protein of u 93.7 1 2.3E-05 50.6 13.8 129 713-842 280-414 (442)
214 smart00184 RING Ring finger. E 93.6 0.05 1.1E-06 38.2 2.2 39 631-670 1-39 (39)
215 TIGR01448 recD_rel helicase, p 93.6 0.47 1E-05 57.8 11.7 65 190-276 322-386 (720)
216 KOG0287 Postreplication repair 93.6 0.026 5.5E-07 58.6 0.8 45 629-675 24-68 (442)
217 PF13604 AAA_30: AAA domain; P 93.4 0.34 7.4E-06 48.9 8.7 57 191-269 1-57 (196)
218 KOG0926 DEAH-box RNA helicase 93.4 0.13 2.9E-06 59.9 6.1 57 782-841 628-702 (1172)
219 PRK11747 dinG ATP-dependent DN 93.3 0.82 1.8E-05 55.6 13.2 38 191-228 25-66 (697)
220 KOG1805 DNA replication helica 93.3 0.58 1.3E-05 56.1 11.2 68 190-280 668-736 (1100)
221 KOG1785 Tyrosine kinase negati 93.3 0.041 9E-07 58.2 1.8 49 628-676 369-417 (563)
222 cd00162 RING RING-finger (Real 93.2 0.056 1.2E-06 39.5 2.0 42 631-673 2-44 (45)
223 PF05876 Terminase_GpA: Phage 93.2 0.37 8E-06 56.7 9.6 75 181-276 6-81 (557)
224 smart00491 HELICc2 helicase su 92.9 0.46 1E-05 45.1 8.2 44 769-813 31-80 (142)
225 PF04564 U-box: U-box domain; 92.8 0.16 3.4E-06 42.1 4.2 48 629-677 5-52 (73)
226 TIGR00570 cdk7 CDK-activating 92.6 0.088 1.9E-06 55.6 2.9 48 629-677 4-56 (309)
227 PF13639 zf-RING_2: Ring finge 92.3 0.034 7.4E-07 40.9 -0.3 40 630-671 2-44 (44)
228 TIGR03117 cas_csf4 CRISPR-asso 91.9 1.1 2.4E-05 53.1 11.3 83 196-296 2-88 (636)
229 TIGR02881 spore_V_K stage V sp 91.4 0.33 7E-06 51.5 5.7 23 213-235 44-66 (261)
230 KOG2879 Predicted E3 ubiquitin 91.3 0.12 2.5E-06 52.7 2.0 51 625-675 236-287 (298)
231 PHA02533 17 large terminase pr 90.8 1.6 3.4E-05 51.1 11.0 41 190-235 58-98 (534)
232 PF12340 DUF3638: Protein of u 89.4 0.77 1.7E-05 46.8 6.1 110 190-319 22-144 (229)
233 TIGR03420 DnaA_homol_Hda DnaA 89.0 3.7 8E-05 42.2 11.2 24 212-235 39-62 (226)
234 KOG2660 Locus-specific chromos 88.9 0.11 2.4E-06 54.5 -0.3 47 627-675 14-61 (331)
235 COG1875 NYN ribonuclease and A 88.8 0.62 1.3E-05 50.1 5.0 39 405-445 351-389 (436)
236 PRK06526 transposase; Provisio 88.5 0.78 1.7E-05 48.2 5.7 35 197-236 89-123 (254)
237 COG3421 Uncharacterized protei 87.9 0.61 1.3E-05 53.0 4.5 83 218-321 4-97 (812)
238 KOG0824 Predicted E3 ubiquitin 87.7 0.34 7.5E-06 50.1 2.3 52 628-680 7-58 (324)
239 TIGR02880 cbbX_cfxQ probable R 87.7 0.54 1.2E-05 50.4 4.0 25 213-237 60-84 (284)
240 KOG2177 Predicted E3 ubiquitin 87.7 0.25 5.5E-06 54.1 1.5 43 627-671 12-54 (386)
241 cd00009 AAA The AAA+ (ATPases 87.5 4.4 9.5E-05 37.7 9.9 24 212-235 20-43 (151)
242 PF06733 DEAD_2: DEAD_2; Inte 86.3 0.43 9.4E-06 47.1 2.2 17 303-319 117-133 (174)
243 PRK08084 DNA replication initi 85.9 4.5 9.7E-05 42.1 9.6 23 212-234 46-68 (235)
244 KOG4172 Predicted E3 ubiquitin 85.8 0.19 4.2E-06 37.5 -0.5 46 629-675 8-54 (62)
245 PLN03025 replication factor C 85.7 6.9 0.00015 42.8 11.4 55 405-459 99-154 (319)
246 CHL00181 cbbX CbbX; Provisiona 85.2 1 2.2E-05 48.4 4.4 23 214-236 62-84 (287)
247 KOG0951 RNA helicase BRR2, DEA 85.1 6.8 0.00015 48.8 11.4 84 211-318 1159-1247(1674)
248 KOG4265 Predicted E3 ubiquitin 84.7 0.39 8.4E-06 51.2 0.9 49 626-676 288-337 (349)
249 PRK12723 flagellar biosynthesi 84.6 7.4 0.00016 43.5 11.0 55 405-459 254-313 (388)
250 PF14447 Prok-RING_4: Prokaryo 84.3 0.63 1.4E-05 35.4 1.6 45 629-677 8-52 (55)
251 PRK08116 hypothetical protein; 84.2 7.7 0.00017 41.2 10.6 26 212-237 115-140 (268)
252 COG5152 Uncharacterized conser 83.7 0.41 9E-06 46.0 0.6 47 625-673 193-239 (259)
253 PRK07003 DNA polymerase III su 83.4 6.2 0.00013 47.4 10.1 51 405-455 119-170 (830)
254 smart00382 AAA ATPases associa 83.1 4.3 9.4E-05 37.3 7.4 24 213-236 4-27 (148)
255 TIGR03015 pepcterm_ATPase puta 82.5 3.2 6.9E-05 44.0 6.9 41 195-235 27-67 (269)
256 PF13245 AAA_19: Part of AAA d 82.2 3.1 6.7E-05 34.7 5.2 49 214-277 13-62 (76)
257 KOG0952 DNA/RNA helicase MER3/ 80.6 2.4 5.1E-05 51.6 5.4 88 213-318 945-1033(1230)
258 PRK14087 dnaA chromosomal repl 80.5 11 0.00023 43.4 10.7 24 212-235 142-165 (450)
259 KOG0311 Predicted E3 ubiquitin 80.0 0.48 1E-05 50.2 -0.5 48 627-675 42-90 (381)
260 PRK14949 DNA polymerase III su 79.9 9.1 0.0002 47.0 10.0 25 212-236 38-63 (944)
261 COG5236 Uncharacterized conser 79.1 2.1 4.5E-05 45.0 3.7 54 622-675 55-108 (493)
262 PRK14956 DNA polymerase III su 79.1 11 0.00025 43.0 10.0 23 214-236 43-65 (484)
263 PRK05707 DNA polymerase III su 78.8 7.9 0.00017 42.4 8.5 45 191-236 3-47 (328)
264 PRK08727 hypothetical protein; 78.7 11 0.00023 39.2 9.1 23 213-235 43-65 (233)
265 PRK00440 rfc replication facto 78.6 22 0.00047 38.7 12.0 23 213-235 40-62 (319)
266 PF05621 TniB: Bacterial TniB 78.5 14 0.0003 39.5 9.7 43 401-443 141-189 (302)
267 PRK00149 dnaA chromosomal repl 78.1 16 0.00035 42.0 11.3 25 212-236 149-173 (450)
268 PF12678 zf-rbx1: RING-H2 zinc 77.8 1.5 3.2E-05 36.3 1.9 40 630-671 21-73 (73)
269 PRK10917 ATP-dependent DNA hel 77.4 12 0.00025 45.7 10.2 95 711-808 291-389 (681)
270 PF11789 zf-Nse: Zinc-finger o 76.9 1.1 2.4E-05 34.9 0.9 43 627-669 10-53 (57)
271 PRK06893 DNA replication initi 76.5 25 0.00054 36.3 11.1 22 214-235 42-63 (229)
272 PRK05703 flhF flagellar biosyn 76.4 18 0.0004 41.1 10.8 54 405-459 299-358 (424)
273 PRK08181 transposase; Validate 76.3 14 0.00031 39.1 9.3 44 192-236 88-131 (269)
274 KOG4159 Predicted E3 ubiquitin 76.0 1.5 3.2E-05 48.6 1.9 47 627-675 83-129 (398)
275 PHA03368 DNA packaging termina 75.9 10 0.00023 44.6 8.6 21 400-420 347-367 (738)
276 PRK14974 cell division protein 75.9 18 0.00039 39.7 10.1 23 214-236 143-165 (336)
277 PRK06835 DNA replication prote 75.6 21 0.00046 39.0 10.7 47 191-237 160-209 (329)
278 TIGR00362 DnaA chromosomal rep 75.6 18 0.00038 41.1 10.5 24 213-236 138-161 (405)
279 PRK12402 replication factor C 75.1 2.8 6.1E-05 46.1 3.9 24 213-236 38-61 (337)
280 KOG1813 Predicted E3 ubiquitin 74.9 1.5 3.2E-05 45.5 1.3 51 623-675 236-286 (313)
281 PRK04195 replication factor C 74.3 26 0.00057 40.7 11.7 24 211-234 39-62 (482)
282 PF12861 zf-Apc11: Anaphase-pr 73.9 3.1 6.8E-05 35.1 2.8 47 629-675 33-82 (85)
283 PRK09112 DNA polymerase III su 73.8 7.8 0.00017 42.9 6.8 40 198-237 30-71 (351)
284 PTZ00112 origin recognition co 73.5 44 0.00095 41.2 12.9 44 192-235 759-805 (1164)
285 PRK05642 DNA replication initi 73.5 16 0.00034 38.0 8.7 37 406-442 98-138 (234)
286 COG0464 SpoVK ATPases of the A 73.2 6.2 0.00013 46.1 6.2 69 191-281 249-324 (494)
287 PRK14961 DNA polymerase III su 73.1 6.4 0.00014 43.9 6.1 23 214-236 41-63 (363)
288 PHA02544 44 clamp loader, smal 73.0 24 0.00052 38.3 10.5 40 406-445 101-142 (316)
289 KOG0802 E3 ubiquitin ligase [P 72.8 1.3 2.9E-05 52.1 0.5 49 625-675 288-341 (543)
290 COG5222 Uncharacterized conser 72.6 2 4.4E-05 44.1 1.7 44 629-673 275-319 (427)
291 COG1199 DinG Rad3-related DNA 72.5 8.1 0.00017 47.0 7.2 72 190-280 14-86 (654)
292 PF00265 TK: Thymidine kinase; 71.7 14 0.0003 36.4 7.4 33 406-441 77-110 (176)
293 PRK14086 dnaA chromosomal repl 71.7 29 0.00064 41.1 11.0 24 213-236 316-339 (617)
294 PRK05580 primosome assembly pr 71.1 33 0.00071 41.8 11.8 96 711-811 171-267 (679)
295 PRK11054 helD DNA helicase IV; 70.9 7.2 0.00016 47.2 6.1 70 190-281 195-265 (684)
296 TIGR00595 priA primosomal prot 70.5 25 0.00055 41.0 10.3 95 711-810 6-101 (505)
297 PRK14960 DNA polymerase III su 70.4 7.5 0.00016 46.1 5.8 24 213-236 39-62 (702)
298 cd01121 Sms Sms (bacterial rad 70.4 26 0.00056 39.1 9.9 45 215-278 86-130 (372)
299 TIGR02768 TraA_Ti Ti-type conj 70.3 20 0.00043 44.1 9.8 58 190-270 351-408 (744)
300 PRK14958 DNA polymerase III su 69.8 40 0.00086 39.4 11.7 22 215-236 42-63 (509)
301 PRK08769 DNA polymerase III su 69.4 22 0.00047 38.8 8.8 47 190-236 3-51 (319)
302 TIGR00365 monothiol glutaredox 69.3 31 0.00068 30.2 8.3 58 732-789 11-74 (97)
303 PRK12323 DNA polymerase III su 68.9 21 0.00046 42.4 9.1 52 405-458 124-178 (700)
304 KOG0297 TNF receptor-associate 68.9 3.1 6.7E-05 46.7 2.3 48 628-677 21-69 (391)
305 PF13177 DNA_pol3_delta2: DNA 68.8 51 0.0011 31.9 10.6 42 196-237 2-45 (162)
306 KOG0298 DEAD box-containing he 68.3 2.1 4.6E-05 53.0 0.9 143 713-861 1202-1344(1394)
307 PRK14088 dnaA chromosomal repl 68.3 62 0.0013 37.1 12.7 25 212-236 131-155 (440)
308 PHA03333 putative ATPase subun 68.1 74 0.0016 38.1 13.1 41 401-444 290-332 (752)
309 PHA03372 DNA packaging termina 67.7 15 0.00032 42.8 7.3 21 401-421 295-315 (668)
310 PF00448 SRP54: SRP54-type pro 67.5 16 0.00035 36.7 6.9 55 405-459 83-141 (196)
311 PRK12422 chromosomal replicati 67.0 26 0.00056 40.2 9.3 25 212-236 142-166 (445)
312 TIGR00643 recG ATP-dependent D 66.6 26 0.00057 42.3 9.7 95 711-808 265-363 (630)
313 cd01120 RecA-like_NTPases RecA 66.3 51 0.0011 31.1 10.2 22 215-236 3-24 (165)
314 KOG1039 Predicted E3 ubiquitin 66.1 3.3 7E-05 45.1 1.7 48 628-675 161-221 (344)
315 PF03354 Terminase_1: Phage Te 65.8 27 0.00059 40.5 9.4 43 194-236 1-47 (477)
316 PRK07764 DNA polymerase III su 65.6 31 0.00067 42.7 10.1 23 214-236 40-62 (824)
317 PRK14952 DNA polymerase III su 65.4 36 0.00077 40.4 10.2 22 215-236 39-60 (584)
318 PF00580 UvrD-helicase: UvrD/R 65.3 9.7 0.00021 41.1 5.4 66 192-279 1-67 (315)
319 PRK07940 DNA polymerase III su 64.9 9.5 0.0002 42.9 5.1 25 212-236 37-61 (394)
320 PRK11889 flhF flagellar biosyn 64.8 42 0.00091 37.6 9.8 22 215-236 245-266 (436)
321 COG1435 Tdk Thymidine kinase [ 64.3 26 0.00056 34.9 7.3 33 406-441 83-117 (201)
322 COG1110 Reverse gyrase [DNA re 64.1 22 0.00048 43.7 8.1 63 732-795 125-193 (1187)
323 KOG4739 Uncharacterized protei 63.7 4 8.6E-05 41.5 1.7 44 630-677 5-50 (233)
324 PRK05986 cob(I)alamin adenolsy 63.5 11 0.00023 37.6 4.6 54 401-457 111-168 (191)
325 PRK04132 replication factor C 63.5 20 0.00043 44.2 7.8 55 405-459 630-685 (846)
326 PRK07994 DNA polymerase III su 62.8 46 0.001 39.9 10.5 23 214-236 41-63 (647)
327 PRK10824 glutaredoxin-4; Provi 62.4 43 0.00093 30.4 7.9 71 721-795 6-83 (115)
328 CHL00095 clpC Clp protease ATP 62.2 26 0.00055 43.8 8.7 24 212-235 201-224 (821)
329 PRK14969 DNA polymerase III su 62.0 35 0.00076 40.1 9.3 23 214-236 41-63 (527)
330 TIGR03345 VI_ClpV1 type VI sec 61.6 42 0.00091 42.0 10.4 36 200-235 196-232 (852)
331 KOG0926 DEAH-box RNA helicase 61.3 7.3 0.00016 46.2 3.4 89 212-322 272-366 (1172)
332 PRK08903 DnaA regulatory inact 60.9 60 0.0013 33.3 10.0 24 212-235 43-66 (227)
333 KOG1807 Helicases [Replication 60.7 28 0.0006 41.4 7.8 74 189-280 376-450 (1025)
334 PRK10865 protein disaggregatio 60.4 27 0.00059 43.7 8.5 36 200-235 187-223 (857)
335 KOG4628 Predicted E3 ubiquitin 60.3 6.2 0.00014 42.7 2.5 47 629-676 230-279 (348)
336 PRK09183 transposase/IS protei 60.2 43 0.00093 35.3 8.8 23 212-234 103-125 (259)
337 COG5540 RING-finger-containing 58.7 3.9 8.5E-05 42.4 0.6 46 629-675 324-372 (374)
338 COG5243 HRD1 HRD ubiquitin lig 58.3 6.3 0.00014 42.1 2.1 55 624-680 283-350 (491)
339 TIGR02688 conserved hypothetic 58.2 36 0.00078 38.3 7.9 23 212-234 210-232 (449)
340 PRK13889 conjugal transfer rel 57.9 39 0.00085 42.6 9.2 49 406-456 434-483 (988)
341 cd01124 KaiC KaiC is a circadi 57.9 19 0.00041 35.5 5.5 47 215-280 3-49 (187)
342 cd03028 GRX_PICOT_like Glutare 57.8 46 0.001 28.5 7.2 57 732-788 7-69 (90)
343 KOG1131 RNA polymerase II tran 56.7 32 0.00069 39.1 7.1 71 191-278 16-88 (755)
344 PRK13342 recombination factor 56.6 42 0.00091 38.2 8.6 22 212-233 37-58 (413)
345 COG0552 FtsY Signal recognitio 56.1 22 0.00047 38.4 5.6 53 405-457 221-283 (340)
346 PRK14963 DNA polymerase III su 55.9 76 0.0017 37.0 10.6 22 215-236 40-61 (504)
347 PF13607 Succ_CoA_lig: Succiny 55.9 48 0.0011 31.2 7.4 86 734-840 3-90 (138)
348 PRK07952 DNA replication prote 54.8 37 0.0008 35.4 7.1 44 194-237 79-125 (244)
349 PRK06647 DNA polymerase III su 54.1 65 0.0014 38.2 9.8 23 214-236 41-63 (563)
350 PRK04296 thymidine kinase; Pro 53.8 13 0.00029 37.1 3.5 23 215-237 6-28 (190)
351 PRK14959 DNA polymerase III su 53.7 1.2E+02 0.0026 36.2 11.8 24 213-236 40-63 (624)
352 COG3972 Superfamily I DNA and 53.7 59 0.0013 36.9 8.5 38 406-446 296-334 (660)
353 PRK13826 Dtr system oriT relax 53.2 67 0.0015 41.0 10.1 50 407-458 470-520 (1102)
354 TIGR02640 gas_vesic_GvpN gas v 53.0 35 0.00075 36.1 6.7 38 195-233 6-43 (262)
355 TIGR00708 cobA cob(I)alamin ad 52.7 6.7 0.00015 38.4 1.1 54 401-457 93-150 (173)
356 TIGR00580 mfd transcription-re 52.6 62 0.0013 40.8 9.7 95 711-808 481-579 (926)
357 PF13173 AAA_14: AAA domain 52.5 12 0.00025 34.7 2.7 35 406-444 62-99 (128)
358 PF01695 IstB_IS21: IstB-like 52.5 11 0.00023 37.3 2.6 27 211-237 47-73 (178)
359 COG1200 RecG RecG-like helicas 52.0 1E+02 0.0023 36.6 10.6 92 713-808 294-390 (677)
360 TIGR01547 phage_term_2 phage t 50.9 45 0.00097 37.6 7.7 38 406-445 102-142 (396)
361 PRK09111 DNA polymerase III su 50.6 85 0.0018 37.5 10.0 24 213-236 48-71 (598)
362 COG4626 Phage terminase-like p 50.4 88 0.0019 36.3 9.6 80 186-280 56-141 (546)
363 COG1484 DnaC DNA replication p 50.4 59 0.0013 34.2 7.9 49 211-278 105-153 (254)
364 COG1198 PriA Primosomal protei 50.0 47 0.001 40.3 7.8 96 708-810 223-320 (730)
365 TIGR03346 chaperone_ClpB ATP-d 49.7 74 0.0016 40.0 9.9 36 200-235 182-218 (852)
366 cd01125 repA Hexameric Replica 49.3 91 0.002 32.3 9.2 61 214-281 4-67 (239)
367 KOG0827 Predicted E3 ubiquitin 48.9 8.8 0.00019 41.4 1.4 45 628-672 4-53 (465)
368 COG5219 Uncharacterized conser 48.6 5.6 0.00012 47.6 -0.2 46 629-674 1470-1522(1525)
369 KOG1942 DNA helicase, TBP-inte 48.2 20 0.00043 37.7 3.7 34 202-235 55-88 (456)
370 PRK10416 signal recognition pa 48.1 1.2E+02 0.0025 33.1 10.0 21 216-236 119-139 (318)
371 PRK11823 DNA repair protein Ra 48.0 60 0.0013 37.3 8.1 46 215-279 84-129 (446)
372 PRK14964 DNA polymerase III su 48.0 83 0.0018 36.5 9.1 24 212-235 36-59 (491)
373 COG1224 TIP49 DNA helicase TIP 47.9 19 0.00042 39.0 3.7 35 201-235 55-89 (450)
374 KOG1734 Predicted RING-contain 47.7 6.7 0.00015 40.1 0.3 48 628-675 224-281 (328)
375 PRK11034 clpA ATP-dependent Cl 47.6 37 0.0008 41.7 6.6 23 212-234 208-230 (758)
376 COG4098 comFA Superfamily II D 47.0 23 0.0005 38.1 4.0 133 629-770 40-184 (441)
377 PRK14722 flhF flagellar biosyn 46.9 1.2E+02 0.0027 33.7 10.0 50 406-456 216-270 (374)
378 KOG0826 Predicted E3 ubiquitin 46.6 8.2 0.00018 40.8 0.7 52 624-677 296-348 (357)
379 cd00046 DEXDc DEAD-like helica 46.6 98 0.0021 27.9 8.2 96 711-811 9-111 (144)
380 PRK13341 recombination factor 46.5 61 0.0013 39.6 8.2 22 212-233 53-74 (725)
381 PRK10919 ATP-dependent DNA hel 45.9 33 0.00071 41.8 5.8 70 191-282 2-72 (672)
382 PF06068 TIP49: TIP49 C-termin 45.8 19 0.00041 39.6 3.3 34 203-236 42-75 (398)
383 PRK14873 primosome assembly pr 44.8 96 0.0021 37.5 9.4 76 712-790 170-247 (665)
384 PHA00350 putative assembly pro 44.1 46 0.00099 37.3 6.1 13 219-231 9-21 (399)
385 PHA00012 I assembly protein 43.7 39 0.00084 36.6 5.1 22 216-237 6-27 (361)
386 PRK07471 DNA polymerase III su 43.6 1.1E+02 0.0024 34.0 9.1 25 213-237 43-67 (365)
387 COG0553 HepA Superfamily II DN 43.1 5 0.00011 50.6 -1.8 93 715-831 432-524 (866)
388 TIGR02639 ClpA ATP-dependent C 43.1 55 0.0012 40.3 7.3 24 212-235 204-227 (731)
389 cd03031 GRX_GRX_like Glutaredo 43.1 91 0.002 29.7 7.1 57 734-790 1-68 (147)
390 PRK10689 transcription-repair 42.7 1.1E+02 0.0023 39.8 9.8 95 711-808 630-728 (1147)
391 cd03418 GRX_GRXb_1_3_like Glut 42.3 1.2E+02 0.0025 24.6 7.0 55 734-788 1-57 (75)
392 KOG0953 Mitochondrial RNA heli 41.8 51 0.0011 37.9 5.9 38 405-443 275-314 (700)
393 TIGR01074 rep ATP-dependent DN 41.7 44 0.00096 40.7 6.1 69 192-282 2-71 (664)
394 PF14570 zf-RING_4: RING/Ubox 41.7 26 0.00056 26.2 2.5 29 645-674 19-47 (48)
395 KOG0738 AAA+-type ATPase [Post 41.3 38 0.00082 37.3 4.6 50 209-281 243-293 (491)
396 PF01443 Viral_helicase1: Vira 40.0 76 0.0016 32.5 6.8 42 405-449 62-103 (234)
397 PRK12377 putative replication 38.3 98 0.0021 32.4 7.2 26 212-237 102-127 (248)
398 PF00308 Bac_DnaA: Bacterial d 38.3 2.4E+02 0.0051 28.9 10.0 36 406-441 98-137 (219)
399 KOG1571 Predicted E3 ubiquitin 38.1 10 0.00022 40.8 -0.1 43 628-675 305-347 (355)
400 COG3973 Superfamily I DNA and 37.8 50 0.0011 38.5 5.2 48 215-275 230-277 (747)
401 PRK13709 conjugal transfer nic 37.6 94 0.002 41.8 8.3 44 188-234 964-1007(1747)
402 PF07015 VirC1: VirC1 protein; 37.3 99 0.0021 31.8 6.8 17 221-237 12-28 (231)
403 cd01129 PulE-GspE PulE/GspE Th 36.9 50 0.0011 35.0 4.9 42 191-235 63-104 (264)
404 KOG1133 Helicase of the DEAD s 36.8 3.1E+02 0.0068 32.8 11.2 96 717-814 615-721 (821)
405 COG4646 DNA methylase [Transcr 36.8 20 0.00043 39.9 1.7 31 432-462 472-502 (637)
406 PRK00771 signal recognition pa 36.5 63 0.0014 36.9 5.8 25 213-237 97-121 (437)
407 PRK06450 threonine synthase; V 36.3 3E+02 0.0066 30.3 11.0 100 710-816 76-175 (338)
408 PTZ00062 glutaredoxin; Provisi 36.3 2E+02 0.0044 29.0 8.8 68 719-790 102-176 (204)
409 PF03237 Terminase_6: Terminas 36.2 1.8E+02 0.0038 32.0 9.5 20 401-420 93-112 (384)
410 cd05566 PTS_IIB_galactitol PTS 35.7 59 0.0013 27.7 4.3 55 260-315 2-58 (89)
411 TIGR01075 uvrD DNA helicase II 35.2 80 0.0017 38.8 6.9 71 190-282 3-74 (715)
412 PRK14712 conjugal transfer nic 34.8 1.2E+02 0.0026 40.4 8.5 51 406-458 931-982 (1623)
413 PF06745 KaiC: KaiC; InterPro 34.7 54 0.0012 33.6 4.6 48 214-280 22-70 (226)
414 PF12846 AAA_10: AAA-like doma 34.4 55 0.0012 34.9 4.9 45 213-276 3-47 (304)
415 PRK10867 signal recognition pa 34.3 93 0.002 35.5 6.7 25 214-238 103-127 (433)
416 KOG2340 Uncharacterized conser 34.3 1.2E+02 0.0025 34.9 7.1 129 713-842 533-667 (698)
417 cd01524 RHOD_Pyr_redox Member 34.2 66 0.0014 27.3 4.4 37 731-767 50-86 (90)
418 cd01520 RHOD_YbbB Member of th 34.1 89 0.0019 28.7 5.6 38 730-767 84-122 (128)
419 PRK07399 DNA polymerase III su 34.1 3.7E+02 0.0081 29.2 11.2 25 212-236 27-51 (314)
420 PRK08939 primosomal protein Dn 33.9 1.1E+02 0.0024 33.2 6.9 27 211-237 156-182 (306)
421 TIGR02370 pyl_corrinoid methyl 33.9 4.8E+02 0.01 26.1 11.2 99 716-836 64-170 (197)
422 KOG4275 Predicted E3 ubiquitin 33.2 13 0.00028 38.6 -0.3 41 628-674 300-341 (350)
423 KOG2932 E3 ubiquitin ligase in 32.7 23 0.00049 37.1 1.4 41 630-674 92-133 (389)
424 PF04641 Rtf2: Rtf2 RING-finge 32.7 59 0.0013 34.3 4.6 51 626-679 111-165 (260)
425 smart00744 RINGv The RING-vari 32.6 35 0.00076 25.6 2.0 41 631-671 2-49 (49)
426 PRK05973 replicative DNA helic 32.5 74 0.0016 33.0 5.1 23 214-236 67-89 (237)
427 PF02606 LpxK: Tetraacyldisacc 32.5 88 0.0019 34.2 6.0 86 221-312 47-135 (326)
428 KOG0828 Predicted E3 ubiquitin 32.1 22 0.00047 39.7 1.2 34 641-675 601-634 (636)
429 COG0541 Ffh Signal recognition 31.9 68 0.0015 36.0 4.9 70 221-311 110-188 (451)
430 TIGR00416 sms DNA repair prote 31.9 1.3E+02 0.0027 34.7 7.4 46 215-279 98-143 (454)
431 COG1702 PhoH Phosphate starvat 31.5 26 0.00056 37.9 1.6 40 407-448 245-284 (348)
432 PRK11773 uvrD DNA-dependent he 31.5 1.1E+02 0.0023 37.7 7.2 71 190-282 8-79 (721)
433 TIGR01242 26Sp45 26S proteasom 30.9 1.3E+02 0.0028 33.4 7.2 25 211-235 156-180 (364)
434 COG2247 LytB Putative cell wal 30.9 1.8E+02 0.004 31.2 7.6 66 731-802 75-145 (337)
435 KOG1493 Anaphase-promoting com 30.9 21 0.00046 29.2 0.6 46 630-675 33-81 (84)
436 cd01518 RHOD_YceA Member of th 30.9 1.1E+02 0.0023 26.7 5.3 38 730-767 59-97 (101)
437 COG3265 GntK Gluconate kinase 30.7 1.1E+02 0.0023 29.2 5.2 33 261-295 69-101 (161)
438 KOG4367 Predicted Zn-finger pr 30.5 30 0.00064 37.8 1.8 32 629-660 5-36 (699)
439 TIGR00064 ftsY signal recognit 30.3 1.5E+02 0.0033 31.4 7.2 50 408-459 195-244 (272)
440 TIGR03880 KaiC_arch_3 KaiC dom 30.3 92 0.002 31.8 5.5 47 215-280 20-66 (224)
441 KOG2817 Predicted E3 ubiquitin 29.9 24 0.00053 38.6 1.1 49 626-674 332-384 (394)
442 PRK08058 DNA polymerase III su 29.7 1.8E+02 0.0039 31.8 8.0 42 195-236 10-53 (329)
443 PRK13766 Hef nuclease; Provisi 29.6 6.5E+02 0.014 31.2 13.8 95 711-812 38-141 (773)
444 cd03115 SRP The signal recogni 29.5 1.8E+02 0.0038 28.2 7.2 23 215-237 4-26 (173)
445 PF07726 AAA_3: ATPase family 29.4 28 0.0006 32.3 1.2 22 214-235 2-23 (131)
446 cd05563 PTS_IIB_ascorbate PTS_ 29.3 1.2E+02 0.0025 25.6 5.1 52 261-315 2-55 (86)
447 cd01523 RHOD_Lact_B Member of 29.2 74 0.0016 27.6 4.0 37 731-767 60-96 (100)
448 cd03027 GRX_DEP Glutaredoxin ( 29.2 2.4E+02 0.0053 22.7 6.8 44 734-777 2-46 (73)
449 KOG1645 RING-finger-containing 29.1 22 0.00047 38.9 0.6 45 629-673 5-54 (463)
450 PRK13235 nifH nitrogenase redu 28.9 41 0.00088 35.8 2.6 19 219-237 9-27 (274)
451 PRK03992 proteasome-activating 28.7 79 0.0017 35.6 5.0 24 211-234 165-188 (389)
452 PHA00673 acetyltransferase dom 28.6 68 0.0015 30.8 3.7 45 405-449 87-134 (154)
453 PRK15483 type III restriction- 28.6 1.4E+02 0.0031 37.4 7.4 70 784-854 501-578 (986)
454 TIGR02533 type_II_gspE general 28.5 75 0.0016 36.9 4.8 41 191-235 225-266 (486)
455 cd06533 Glyco_transf_WecG_TagA 28.5 3.3E+02 0.0072 26.5 8.8 59 732-791 46-107 (171)
456 TIGR01281 DPOR_bchL light-inde 28.5 43 0.00093 35.4 2.7 19 219-237 8-26 (268)
457 COG1222 RPT1 ATP-dependent 26S 28.4 91 0.002 34.2 4.9 26 210-235 184-209 (406)
458 cd02037 MRP-like MRP (Multiple 28.2 57 0.0012 31.7 3.3 51 405-459 67-117 (169)
459 PRK10037 cell division protein 28.1 44 0.00096 34.9 2.7 22 216-237 7-28 (250)
460 TIGR00347 bioD dethiobiotin sy 28.1 60 0.0013 31.3 3.5 24 215-238 2-25 (166)
461 cd00268 DEADc DEAD-box helicas 28.0 5.9E+02 0.013 25.0 13.6 94 712-810 46-151 (203)
462 smart00450 RHOD Rhodanese Homo 27.9 1.3E+02 0.0029 25.3 5.4 39 729-767 53-92 (100)
463 KOG3039 Uncharacterized conser 27.7 29 0.00062 35.2 1.1 37 624-660 39-75 (303)
464 cd03030 GRX_SH3BGR Glutaredoxi 27.5 2.7E+02 0.006 24.0 7.0 51 745-795 19-73 (92)
465 PRK13833 conjugal transfer pro 27.5 89 0.0019 34.1 4.9 40 192-235 129-168 (323)
466 PTZ00454 26S protease regulato 27.4 87 0.0019 35.4 5.0 24 211-234 179-202 (398)
467 TIGR00696 wecB_tagA_cpsF bacte 27.0 4.1E+02 0.0088 26.2 9.0 72 717-791 35-108 (177)
468 PRK13230 nitrogenase reductase 26.9 47 0.001 35.4 2.7 51 405-458 116-166 (279)
469 PRK06731 flhF flagellar biosyn 26.8 4.6E+02 0.01 27.8 10.0 52 405-457 154-210 (270)
470 PHA02518 ParA-like protein; Pr 26.5 69 0.0015 32.2 3.7 38 219-275 9-48 (211)
471 TIGR00682 lpxK tetraacyldisacc 26.5 1.2E+02 0.0027 32.8 5.8 20 220-239 39-58 (311)
472 CHL00072 chlL photochlorophyll 26.3 50 0.0011 35.5 2.7 18 220-237 9-26 (290)
473 cd01528 RHOD_2 Member of the R 26.3 1.6E+02 0.0036 25.4 5.7 37 731-767 57-94 (101)
474 COG5175 MOT2 Transcriptional r 26.1 31 0.00067 36.5 1.0 49 626-675 12-64 (480)
475 KOG3800 Predicted E3 ubiquitin 26.0 36 0.00078 35.6 1.4 33 643-676 20-52 (300)
476 KOG1133 Helicase of the DEAD s 25.9 1E+02 0.0022 36.5 5.2 44 190-234 14-57 (821)
477 TIGR00614 recQ_fam ATP-depende 25.8 5.2E+02 0.011 29.9 11.2 78 732-810 51-135 (470)
478 COG2256 MGS1 ATPase related to 25.7 2.8E+02 0.006 31.1 8.1 22 210-231 47-68 (436)
479 PRK11776 ATP-dependent RNA hel 25.6 2.9E+02 0.0062 31.8 9.1 95 711-810 50-155 (460)
480 PRK13185 chlL protochlorophyll 25.6 52 0.0011 34.8 2.7 20 218-237 9-28 (270)
481 PRK12727 flagellar biosynthesi 25.4 6.1E+02 0.013 29.8 11.2 21 215-235 354-374 (559)
482 cd02117 NifH_like This family 25.4 53 0.0012 33.3 2.7 19 219-237 8-26 (212)
483 KOG0740 AAA+-type ATPase [Post 25.3 54 0.0012 36.9 2.8 51 209-281 184-234 (428)
484 PF12367 PFO_beta_C: Pyruvate 25.3 1.5E+02 0.0033 24.0 4.6 48 804-852 15-62 (67)
485 TIGR03877 thermo_KaiC_1 KaiC d 25.3 1.4E+02 0.003 31.0 5.7 24 213-236 23-46 (237)
486 PRK13849 putative crown gall t 25.1 78 0.0017 32.7 3.8 37 220-275 11-49 (231)
487 PF12622 NpwBP: mRNA biogenesi 25.1 36 0.00077 25.5 0.9 11 806-816 4-14 (48)
488 TIGR01425 SRP54_euk signal rec 25.0 2E+02 0.0043 32.7 7.2 22 215-236 104-125 (429)
489 PRK04296 thymidine kinase; Pro 24.9 69 0.0015 31.9 3.3 35 405-441 78-113 (190)
490 TIGR00959 ffh signal recogniti 24.9 1.5E+02 0.0033 33.8 6.3 23 214-236 102-124 (428)
491 PF03808 Glyco_tran_WecB: Glyc 24.8 3.9E+02 0.0084 26.0 8.5 61 731-792 47-110 (172)
492 KOG0701 dsRNA-specific nucleas 24.8 43 0.00093 43.9 2.1 93 736-830 296-400 (1606)
493 PRK08533 flagellar accessory p 24.7 1.4E+02 0.0029 30.9 5.5 24 213-236 26-49 (230)
494 TIGR03881 KaiC_arch_4 KaiC dom 24.7 1.3E+02 0.0028 30.7 5.5 21 215-235 24-44 (229)
495 PF05970 PIF1: PIF1-like helic 24.7 1.5E+02 0.0033 33.0 6.3 60 192-270 2-62 (364)
496 PRK10436 hypothetical protein; 24.6 1.1E+02 0.0023 35.4 5.0 42 191-235 201-242 (462)
497 KOG0780 Signal recognition par 24.6 85 0.0018 34.7 3.9 75 221-314 111-192 (483)
498 KOG0651 26S proteasome regulat 24.6 1.4E+02 0.003 32.1 5.3 24 212-235 167-190 (388)
499 KOG2543 Origin recognition com 24.6 87 0.0019 34.6 4.0 46 190-235 8-54 (438)
500 COG0593 DnaA ATPase involved i 24.4 4.6E+02 0.01 29.6 9.8 53 405-457 175-235 (408)
No 1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-117 Score=921.44 Aligned_cols=623 Identities=57% Similarity=0.955 Sum_probs=574.8
Q ss_pred CcccccccccCCCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCC
Q 002744 170 DLDQQNAFMTETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASS 249 (885)
Q Consensus 170 ~~~~~~~~~~~~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~ 249 (885)
+++.+++.....+++|.++..+|.|||++++.|+..++.+.+.|||||||||+|||||+|++++...
T Consensus 163 dlde~~p~i~e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~------------- 229 (791)
T KOG1002|consen 163 DLDEANPVIAERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV------------- 229 (791)
T ss_pred hhhhcCchhhhcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-------------
Confidence 5677888888899999999999999999999999999999999999999999999999999998732
Q ss_pred CCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcc
Q 002744 250 SSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQ 329 (885)
Q Consensus 250 ~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~ 329 (885)
...|+|||||...+.||.+||.+++. +.+++++|||.++....+.+..||||+|||..+.+.|++.-..
T Consensus 230 -------~ra~tLVvaP~VAlmQW~nEI~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~G--- 298 (791)
T KOG1002|consen 230 -------DRAPTLVVAPTVALMQWKNEIERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYG--- 298 (791)
T ss_pred -------ccCCeeEEccHHHHHHHHHHHHHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhcccc---
Confidence 23689999999999999999999997 7999999999999999999999999999999999988652100
Q ss_pred cccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEE
Q 002744 330 KCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERI 409 (885)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~v 409 (885)
..+. -......+.|++++|.+|
T Consensus 299 -------------------------------------------------frrK---------ngv~ke~SlLHsi~~~Ri 320 (791)
T KOG1002|consen 299 -------------------------------------------------FRRK---------NGVDKEKSLLHSIKFYRI 320 (791)
T ss_pred -------------------------------------------------cccc---------CCcccccchhhhceeeee
Confidence 0000 013345688999999999
Q ss_pred EEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccC---CCCCCCC
Q 002744 410 ILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYS---SAECPNC 486 (885)
Q Consensus 410 IlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 486 (885)
|+||||.||+..|++++++..|.+.+||+|||||+||+..|||+|++||++.||++|+|..|++..+++. ...|+.|
T Consensus 321 IlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c 400 (791)
T KOG1002|consen 321 ILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHC 400 (791)
T ss_pred ehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865 5789999
Q ss_pred CCCCcchhhhhhhhhcccccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHH
Q 002744 487 PHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYES 566 (885)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~ 566 (885)
.++...|+.+|+..+..||+..+....|..+.. ..+.++..+|+||+|-..+.++.|||+++.+.+..|+.++.++|+.
T Consensus 401 ~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~-~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeS 479 (791)
T KOG1002|consen 401 SHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFN-NIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYES 479 (791)
T ss_pred cchhhhhhhhhcccccccchhhcccCchHHHHH-HHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHH
Confidence 999999999999999999999999888887776 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccC
Q 002744 567 LYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNC 646 (885)
Q Consensus 567 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 646 (885)
++......++.|...+.++++|+++|.++.++||+++||+|+.++....+. +......+|.+|.+++++++.+.|
T Consensus 480 LY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~-----~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 480 LYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLP-----DENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCC-----ccccCceeecccCChhhhhHhhhh
Confidence 999999999999999999999999999999999999999999877444332 334456789999999999999999
Q ss_pred Cchhhhhhhhhccccc---cCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHH
Q 002744 647 GHAFCKACLFDSSASK---FVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEI 723 (885)
Q Consensus 647 ~~~~c~~c~~~~~~~~---~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL 723 (885)
.|.||.-|+.++.... ....||.|.+++.+|... ...++...++|..+++++++.+++|.+|+|+++|++.|
T Consensus 555 hH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse-----~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl 629 (791)
T KOG1002|consen 555 HHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE-----PALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEEL 629 (791)
T ss_pred hHHHHHHHHHHHHHhhhcccCCCCccccccccccccc-----hhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHH
Confidence 9999999998876533 348999999999988543 33456778999999999999999999999999999999
Q ss_pred HHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccccccc
Q 002744 724 RFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 803 (885)
Q Consensus 724 ~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A 803 (885)
..+.+++..-|.||||||+.|+|+|...|.+.|+.++.+.|+|++..|.+.|+.|.++++++|||+|++|||+.|||+.|
T Consensus 630 ~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteA 709 (791)
T KOG1002|consen 630 YFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEA 709 (791)
T ss_pred HHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechh
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCCCHHHHHhhh
Q 002744 804 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 883 (885)
Q Consensus 804 ~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~lf 883 (885)
++|++|||||||+++.||.+|+|||||.+||.|.||++++|||++|+++|++|..+|++++|+++..+++++++||++||
T Consensus 710 SqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~kLt~eDmqfLF 789 (791)
T KOG1002|consen 710 SQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAISKLTEEDMQFLF 789 (791)
T ss_pred ceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHHhcCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 002744 884 VT 885 (885)
Q Consensus 884 ~~ 885 (885)
.+
T Consensus 790 ~n 791 (791)
T KOG1002|consen 790 NN 791 (791)
T ss_pred cC
Confidence 75
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-92 Score=778.71 Aligned_cols=483 Identities=27% Similarity=0.431 Sum_probs=409.0
Q ss_pred cCCCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCC
Q 002744 179 TETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGI 258 (885)
Q Consensus 179 ~~~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (885)
...+..|+.+...|+|||++||+||.....+. .|||||||||||||||+|+|++.+++... -.
T Consensus 193 ~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~-~GGILgDeMGLGKTIQiisFLaaL~~S~k----------------~~ 255 (923)
T KOG0387|consen 193 EGGFKVPGFIWSKLFPYQREGVQWLWELYCQR-AGGILGDEMGLGKTIQIISFLAALHHSGK----------------LT 255 (923)
T ss_pred cccccccHHHHHHhhHHHHHHHHHHHHHHhcc-CCCeecccccCccchhHHHHHHHHhhccc----------------cc
Confidence 44578899999999999999999988866665 69999999999999999999999876532 23
Q ss_pred CcEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccc---------------hhhhcCCCEEEecchhhHHhhhhc
Q 002744 259 KATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS---------------AKQFSEFDFVITTYSIIEADYRKH 323 (885)
Q Consensus 259 ~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~---------------~~~l~~~dvvItty~~l~~~~~~~ 323 (885)
+|+|||||++++.||++|+.+|+| .++|.+||+...... .....+..|+||||+.++..
T Consensus 256 ~paLIVCP~Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~---- 329 (923)
T KOG0387|consen 256 KPALIVCPATIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ---- 329 (923)
T ss_pred CceEEEccHHHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----
Confidence 899999999999999999999999 799999999765311 01123567899999998653
Q ss_pred cCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 002744 324 VMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHS 403 (885)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 403 (885)
...+..
T Consensus 330 --------------------------------------------------------------------------~d~l~~ 335 (923)
T KOG0387|consen 330 --------------------------------------------------------------------------GDDLLG 335 (923)
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 234778
Q ss_pred ceecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCC
Q 002744 404 LKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAEC 483 (885)
Q Consensus 404 ~~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (885)
+.|++||+||+|+|||++|+++.+|+.+++.+|++||||||||++.|||+|+.|+.|..
T Consensus 336 ~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~--------------------- 394 (923)
T KOG0387|consen 336 ILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGK--------------------- 394 (923)
T ss_pred ccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCc---------------------
Confidence 89999999999999999999999999999999999999999999999999999988554
Q ss_pred CCCCCCCcchhhhhhhhhcccccccCCCchhhHH------HHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCC
Q 002744 484 PNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRA------MILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLD 557 (885)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls 557 (885)
++....|++.|..||..+++.++...+ ....|+.+++||+|||+|++|.. +.||.+.+.++.|.||
T Consensus 395 -------Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT 466 (923)
T KOG0387|consen 395 -------LGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLT 466 (923)
T ss_pred -------ccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEecc
Confidence 456677999999999999998763322 23345889999999999999977 6799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCc
Q 002744 558 IREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDL 637 (885)
Q Consensus 558 ~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (885)
+.|+.+|+.+.+.... .. +.....+++..+..||++||||.++.........
T Consensus 467 ~~QR~~Y~~fl~s~~v--~~------i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~~-------------------- 518 (923)
T KOG0387|consen 467 KLQRRLYQRFLNSSEV--NK------ILNGKRNCLSGIDILRKICNHPDLLDRRDEDEKQ-------------------- 518 (923)
T ss_pred HHHHHHHHHHhhhHHH--HH------HHcCCccceechHHHHhhcCCcccccCccccccc--------------------
Confidence 9999999998765332 22 2233346778899999999999987422100000
Q ss_pred CCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhc-ccccCcchHH
Q 002744 638 ADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQ-LDEFQSSTKI 716 (885)
Q Consensus 638 ~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~S~Kl 716 (885)
..+ ..++..|.|+
T Consensus 519 ------------------------------------------------------------------~~D~~g~~k~sGKm 532 (923)
T KOG0387|consen 519 ------------------------------------------------------------------GPDYEGDPKRSGKM 532 (923)
T ss_pred ------------------------------------------------------------------CCCcCCChhhcchH
Confidence 000 0234569999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHH-hCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCc
Q 002744 717 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH-KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 795 (885)
Q Consensus 717 ~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~-~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg 795 (885)
..+.++|..+.. .++|||+|+|.+.|+++|+.+|. ..||.|+++||+++...|+.+|++||++..++|||++|+|||
T Consensus 533 ~vl~~ll~~W~k--qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG 610 (923)
T KOG0387|consen 533 KVLAKLLKDWKK--QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG 610 (923)
T ss_pred HHHHHHHHHHhh--CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc
Confidence 999999999854 46899999999999999999999 689999999999999999999999999999999999999999
Q ss_pred ccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCCC
Q 002744 796 VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLT 875 (885)
Q Consensus 796 ~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~ 875 (885)
.||||+.||+||+|||+|||+++.||..||||+||+++|.||||++.|||||+||.+|..|+.+.+.++.+... ..-..
T Consensus 611 LGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q-~RfF~ 689 (923)
T KOG0387|consen 611 LGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQ-RRFFK 689 (923)
T ss_pred cccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHH-hhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998865433 23345
Q ss_pred HHHHHhhhc
Q 002744 876 EADMRFLFV 884 (885)
Q Consensus 876 ~~~~~~lf~ 884 (885)
..|+..||.
T Consensus 690 ~~dl~dLFs 698 (923)
T KOG0387|consen 690 GNDLHDLFS 698 (923)
T ss_pred cccHHHHhC
Confidence 667777774
No 3
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=7.6e-93 Score=775.16 Aligned_cols=458 Identities=34% Similarity=0.534 Sum_probs=393.2
Q ss_pred CCcccc-cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEE
Q 002744 184 DPPDLI-TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 262 (885)
Q Consensus 184 ~p~~~~-~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 262 (885)
.|..+. ..|+|||++|++||+..+..+. +||||||||||||+|+|+++.+++...+. .||+|
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engi-ngILaDEMGLGKTlQtIs~l~yl~~~~~~----------------~GPfL 221 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGI-NGILADEMGLGKTLQTISLLGYLKGRKGI----------------PGPFL 221 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCc-ccEeehhcccchHHHHHHHHHHHHHhcCC----------------CCCeE
Confidence 577777 8899999999999999999886 89999999999999999999988765443 37999
Q ss_pred EEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccch-----hhhcCCCEEEecchhhHHhhhhccCCCcccccccCcc
Q 002744 263 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 337 (885)
Q Consensus 263 IV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~-----~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~ 337 (885)
|+||.|++.||.+||.+|+| .+++++|+|+...+.. ..-..++|+||||++..++
T Consensus 222 Vi~P~StL~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d------------------ 281 (971)
T KOG0385|consen 222 VIAPKSTLDNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD------------------ 281 (971)
T ss_pred EEeeHhhHHHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh------------------
Confidence 99999999999999999999 8999999999866532 1124799999999998765
Q ss_pred cchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEeccccc
Q 002744 338 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 417 (885)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~i 417 (885)
++.|..+.|.++||||||+|
T Consensus 282 ------------------------------------------------------------k~~lk~~~W~ylvIDEaHRi 301 (971)
T KOG0385|consen 282 ------------------------------------------------------------KSFLKKFNWRYLVIDEAHRI 301 (971)
T ss_pred ------------------------------------------------------------HHHHhcCCceEEEechhhhh
Confidence 24588899999999999999
Q ss_pred CCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhh
Q 002744 418 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 497 (885)
Q Consensus 418 kn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (885)
||.+|.+++.++.+.+.+|++|||||+||++.|||+||+||-|+.|.+ .+.|+.|
T Consensus 302 KN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~-------------------------~e~F~sw 356 (971)
T KOG0385|consen 302 KNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNS-------------------------AEDFDSW 356 (971)
T ss_pred cchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccC-------------------------HHHHHHH
Confidence 999999999999999999999999999999999999999999887743 2344444
Q ss_pred hhhhcccccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHH
Q 002744 498 NRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNT 577 (885)
Q Consensus 498 ~~~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~ 577 (885)
|.... ..+....+..++.+|+||++||.|.+|... |||+.+..+++.|+..|+++|..++......++.
T Consensus 357 ---F~~~~------~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~s--LppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~ 425 (971)
T KOG0385|consen 357 ---FDFTN------CEGDQELVSRLHKVLRPFLLRRIKSDVEKS--LPPKKELIIYVGMSSMQKKWYKAILMKDLDALNG 425 (971)
T ss_pred ---Hcccc------cccCHHHHHHHHhhhhHHHHHHHHHhHhhc--CCCcceeeEeccchHHHHHHHHHHHHhcchhhcc
Confidence 33321 122335778889999999999999999776 9999999999999999999999998877666443
Q ss_pred HHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhh
Q 002744 578 YVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFD 657 (885)
Q Consensus 578 ~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~ 657 (885)
.. ......+.+++++||+||+||||+...... |.++..-
T Consensus 426 ~~-----~~~k~kL~NI~mQLRKccnHPYLF~g~ePg--------------------------~pyttde---------- 464 (971)
T KOG0385|consen 426 EG-----KGEKTKLQNIMMQLRKCCNHPYLFDGAEPG--------------------------PPYTTDE---------- 464 (971)
T ss_pred cc-----cchhhHHHHHHHHHHHhcCCccccCCCCCC--------------------------CCCCcch----------
Confidence 21 113467899999999999999998431110 0000000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEE
Q 002744 658 SSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIV 737 (885)
Q Consensus 658 ~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvII 737 (885)
.-+..|+|+..|-++|..+.+ .|+||||
T Consensus 465 --------------------------------------------------hLv~nSGKm~vLDkLL~~Lk~--~GhRVLI 492 (971)
T KOG0385|consen 465 --------------------------------------------------HLVTNSGKMLVLDKLLPKLKE--QGHRVLI 492 (971)
T ss_pred --------------------------------------------------HHHhcCcceehHHHHHHHHHh--CCCeEEE
Confidence 112348999999999999955 4799999
Q ss_pred EccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCC-CceEEEEecCCCcccccccccCEEEEeCCCCCcc
Q 002744 738 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPA 816 (885)
Q Consensus 738 Fsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~ 816 (885)
|||++.|+|+|++++..+++.|+||||+++.++|.+.|+.|+..+ ..+|||+||+|||+||||+.||+||+||.+|||.
T Consensus 493 FSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ 572 (971)
T KOG0385|consen 493 FSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQ 572 (971)
T ss_pred eHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCch
Confidence 999999999999999999999999999999999999999999854 6899999999999999999999999999999999
Q ss_pred hHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCC
Q 002744 817 VEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS 867 (885)
Q Consensus 817 ~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~ 867 (885)
.+.||++|||||||+++|.||||++++||||+|++++..|..+-.-++++.
T Consensus 573 ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 573 VDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred hhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999999988888777665
No 4
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2e-85 Score=706.56 Aligned_cols=547 Identities=27% Similarity=0.417 Sum_probs=414.1
Q ss_pred cccccccc---cCCCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCC
Q 002744 171 LDQQNAFM---TETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDA 247 (885)
Q Consensus 171 ~~~~~~~~---~~~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~ 247 (885)
..++.+.. ..+.++|..++++|++||+.|++|+...+.++. +||||||||||||+|+|++++++.+.+..|
T Consensus 544 ~n~q~~t~i~~t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGi-NGILADeMGLGKTVQsisvlAhLaE~~nIw----- 617 (1185)
T KOG0388|consen 544 GNFQGPTNIDTTRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGI-NGILADEMGLGKTVQSISVLAHLAETHNIW----- 617 (1185)
T ss_pred ccccCCccccceeeccCchhhhhhhHHHhhccHHHHHHHHHccc-cceehhhhccchhHHHHHHHHHHHHhccCC-----
Confidence 34444442 446889999999999999999999999888886 999999999999999999999998877765
Q ss_pred CCCCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccch-----------hhhcCCCEEEecchhh
Q 002744 248 SSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA-----------KQFSEFDFVITTYSII 316 (885)
Q Consensus 248 ~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~-----------~~l~~~dvvItty~~l 316 (885)
||+|||+|++++.+|.+||.+|+| .++++.|+|+...+.. .....|+||||||+++
T Consensus 618 -----------GPFLVVtpaStL~NWaqEisrFlP--~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlv 684 (1185)
T KOG0388|consen 618 -----------GPFLVVTPASTLHNWAQEISRFLP--SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLV 684 (1185)
T ss_pred -----------CceEEeehHHHHhHHHHHHHHhCc--cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeee
Confidence 788999999999999999999999 8999999998877642 2346799999999998
Q ss_pred HHhhhhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCC
Q 002744 317 EADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSG 396 (885)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (885)
..+.
T Consensus 685 VtDe---------------------------------------------------------------------------- 688 (1185)
T KOG0388|consen 685 VTDE---------------------------------------------------------------------------- 688 (1185)
T ss_pred echH----------------------------------------------------------------------------
Confidence 6652
Q ss_pred CCCCCccceecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCcccccccccccc
Q 002744 397 GKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVL 476 (885)
Q Consensus 397 ~~~~l~~~~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~ 476 (885)
.+|++++|.++|+|||+.||+..|.+|+.+..++|++|++||||||||++.|||+||+|+-|..|
T Consensus 689 --ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLF------------- 753 (1185)
T KOG0388|consen 689 --KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLF------------- 753 (1185)
T ss_pred --HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhh-------------
Confidence 34888999999999999999999999999999999999999999999999999999999987766
Q ss_pred ccCCCCCCCCCCCCcchhhhhhhhhcccccccCCCchh-hHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecC
Q 002744 477 DYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGG-RRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDS 555 (885)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ 555 (885)
+....|+++|.+.|+.+...... ......++|.+|+||||||.|++|..+ |..+++..++|.
T Consensus 754 ---------------DshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sE--Lg~Kteidv~Cd 816 (1185)
T KOG0388|consen 754 ---------------DSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISE--LGQKTEIDVYCD 816 (1185)
T ss_pred ---------------hchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH--hccceEEEEEec
Confidence 34456778888888776544321 233455679999999999999999887 778999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeeccccccc-------------CCC--
Q 002744 556 LDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLR-------------GET-- 620 (885)
Q Consensus 556 ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~-------------~~~-- 620 (885)
|+..|+.+|+.+....... .+..++++||++|+||.|+......+.. .+.
T Consensus 817 Ls~RQ~~lYq~ik~~iS~~---------------E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnp 881 (1185)
T KOG0388|consen 817 LSYRQKVLYQEIKRSISSM---------------EMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNP 881 (1185)
T ss_pred hhHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCc
Confidence 9999999999998765432 3345899999999999987543222110 000
Q ss_pred ---------hhhh---------hhhhhhhccccCcCC-------CCcccc---CCc----------hhhhhhhhhccc-c
Q 002744 621 ---------EADA---------EHVQQVCGLCNDLAD-------DPVVTN---CGH----------AFCKACLFDSSA-S 661 (885)
Q Consensus 621 ---------~~~~---------~~~~~~~~~~~~~~~-------~~~~~~---c~~----------~~c~~c~~~~~~-~ 661 (885)
..+. +.+...|....-+.. .++++. .+. .+....+..... .
T Consensus 882 i~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~ 961 (1185)
T KOG0388|consen 882 IDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLL 961 (1185)
T ss_pred eeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchh
Confidence 0000 111122222221111 111110 000 011110000000 0
Q ss_pred ----------cc------CCCCCCCCCCccccccccCCCCCCCccccccCCCc--chhhhhhc-ccccCcchHHHHHHHH
Q 002744 662 ----------KF------VAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKS--SSILNRIQ-LDEFQSSTKIEALREE 722 (885)
Q Consensus 662 ----------~~------~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~S~Kl~~L~~l 722 (885)
.. .+..|....+... . .+....+...+..+.. ..-+.-.. ...+..|+|+..|-++
T Consensus 962 e~~~rvi~~e~~~L~~~~y~y~P~v~apPvL--I---~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeL 1036 (1185)
T KOG0388|consen 962 ESMRRVIDEEAYRLQRHVYCYSPVVAAPPVL--I---SNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDEL 1036 (1185)
T ss_pred HHHHHHhhHHHHHhhhheeeeccccCCCCee--e---ecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHH
Confidence 00 1111222222110 0 0001111010000000 00000000 1224569999999999
Q ss_pred HHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccc
Q 002744 723 IRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTV 802 (885)
Q Consensus 723 L~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~ 802 (885)
|.++. ..+|+||+|.|++.|+++|+++|...|++|++++|+.+..+|..+|.+|+. ++++|||+||+|||.||||++
T Consensus 1037 L~kLk--aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTA 1113 (1185)
T KOG0388|consen 1037 LPKLK--AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTA 1113 (1185)
T ss_pred HHHhh--cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccc
Confidence 99994 458999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred cCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCC
Q 002744 803 ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGS 867 (885)
Q Consensus 803 A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~ 867 (885)
|++|||||.+|||..+.||++||||+||+++|+||||++++||||+|++++.+|..+..-+|-|.
T Consensus 1114 ADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1114 ADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred cceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999988888777653
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-85 Score=720.18 Aligned_cols=512 Identities=29% Similarity=0.440 Sum_probs=386.4
Q ss_pred CCcccc--cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcE
Q 002744 184 DPPDLI--TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKAT 261 (885)
Q Consensus 184 ~p~~~~--~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (885)
+|+.+. .+|.|||+.||+|+.-.+.... +||||||||||||+|+||+++++.+.+.. +|.
T Consensus 390 qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l-~gILADEMGLGKTiQvIaFlayLkq~g~~-----------------gpH 451 (941)
T KOG0389|consen 390 QPKLLSSGIQLKDYQLVGVNWLLLLYKKKL-NGILADEMGLGKTIQVIAFLAYLKQIGNP-----------------GPH 451 (941)
T ss_pred CccccCCCCcccchhhhhHHHHHHHHHccc-cceehhhccCcchhHHHHHHHHHHHcCCC-----------------CCc
Confidence 555554 4699999999999887777775 77999999999999999999999887653 789
Q ss_pred EEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchh------hhcCCCEEEecchhhHHhhhhccCCCcccccccC
Q 002744 262 LVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAK------QFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCG 335 (885)
Q Consensus 262 LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~------~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~ 335 (885)
|||||+|++.+|.+||.+|+| .++|..|||+...+... .-.+|||++|||+.+...
T Consensus 452 LVVvPsSTleNWlrEf~kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~---------------- 513 (941)
T KOG0389|consen 452 LVVVPSSTLENWLREFAKWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS---------------- 513 (941)
T ss_pred EEEecchhHHHHHHHHHHhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC----------------
Confidence 999999999999999999999 89999999998655321 124799999999997542
Q ss_pred cccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEeccc
Q 002744 336 KSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAH 415 (885)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH 415 (885)
..++++|...+|++||.||+|
T Consensus 514 -----------------------------------------------------------kdDRsflk~~~~n~viyDEgH 534 (941)
T KOG0389|consen 514 -----------------------------------------------------------KDDRSFLKNQKFNYVIYDEGH 534 (941)
T ss_pred -----------------------------------------------------------hHHHHHHHhccccEEEecchh
Confidence 233466888999999999999
Q ss_pred ccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhh
Q 002744 416 FIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFC 495 (885)
Q Consensus 416 ~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (885)
.+||..|.+++.+..+++.+|++|||||+||++.||++||.|+-|..|.... +.+.
T Consensus 535 mLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~------------------------~dl~ 590 (941)
T KOG0389|consen 535 MLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSM------------------------EDLD 590 (941)
T ss_pred hhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccc------------------------hHHH
Confidence 9999999999999999999999999999999999999999999887764321 2211
Q ss_pred hhhhhhcccccccCC-CchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 002744 496 WWNRYVATPIQTHGN-SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQ 574 (885)
Q Consensus 496 ~~~~~~~~~i~~~~~-~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~ 574 (885)
..-+..... .+.. ...-.+..+.+-..++.||+|||.|.+|... |||++..+.+|+|+..|+.+|..+.+.....
T Consensus 591 ~if~~k~~~--d~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~--LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~ 666 (941)
T KOG0389|consen 591 VIFKAKKTS--DGDIENALLSQERISRAKTIMKPFILRRLKSQVLKQ--LPPKIQRIEYCEMSEKQKQLYDELIELYDVK 666 (941)
T ss_pred HHHhccCCc--cchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCccceeEeeecchHHHHHHHHHHHHHhhh
Confidence 111111111 0000 0111223344446799999999999999887 9999999999999999999999988766332
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhcccc--CcCCCCccccC--Cchh
Q 002744 575 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCN--DLADDPVVTNC--GHAF 650 (885)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~c--~~~~ 650 (885)
....... ....+ -+.+++||++++||.|+...-+.+...............|. |+ ...++..++.. .|..
T Consensus 667 ~~~~~~n-s~~~~----~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~-~n~qyIfEDm~~msDfelHqL 740 (941)
T KOG0389|consen 667 LNEVSKN-SELKS----GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKK-ANEQYIFEDMEVMSDFELHQL 740 (941)
T ss_pred ccccccc-ccccc----chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhh-cCHHHHHHHHHhhhHHHHHHH
Confidence 2221111 11111 45899999999999987432111110000000000000000 10 01111111111 1222
Q ss_pred hhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcC
Q 002744 651 CKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERD 730 (885)
Q Consensus 651 c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~ 730 (885)
|.. .. |-..+ .+..+.|-.|+|+..|.++|.++.+.
T Consensus 741 c~~--f~------------~~~~f-----------------------------~L~d~~~mdSgK~r~L~~LLp~~k~~- 776 (941)
T KOG0389|consen 741 CCQ--FR------------HLSKF-----------------------------QLKDDLWMDSGKCRKLKELLPKIKKK- 776 (941)
T ss_pred HHh--cC------------CCccc-----------------------------ccCCchhhhhhhHhHHHHHHHHHhhc-
Confidence 211 00 00000 11123345699999999999999654
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 810 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D 810 (885)
|+||||||||+.|+|+|+..|.-.++.|+|+||+|....|+.+|+.|+.+.+++|||+||+|||.||||++||+||++|
T Consensus 777 -G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 777 -GDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred -CCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcc
Q 002744 811 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSAD 869 (885)
Q Consensus 811 ~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~ 869 (885)
.++||..+.||.+|+||+||+|+|+|||||+++||||.|+++++.|..+=..+.++...
T Consensus 856 ~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 856 IDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred cCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 99999999999999999999999999999999999999999999997776665554433
No 6
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.7e-84 Score=737.04 Aligned_cols=471 Identities=28% Similarity=0.455 Sum_probs=389.4
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
..||+||++|++||+..|... .+||||||||||||+|+|+++.++...... .||+|||||.|+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~-~n~ILADEmgLgktvqti~fl~~l~~~~~~----------------~gpflvvvplst 431 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKR-NNCILADEMGLGKTVQTITFLSYLFHSLQI----------------HGPFLVVVPLST 431 (1373)
T ss_pred chhhhhhcccchhHHHHHHhc-ccceehhhcCCCcchHHHHHHHHHHHhhhc----------------cCCeEEEeehhh
Confidence 479999999999999999987 499999999999999999999888766543 379999999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcccchhh-----------hcCCCEEEecchhhHHhhhhccCCCcccccccCccc
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ-----------FSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSF 338 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~-----------l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~ 338 (885)
+..|++||..|+ .+++++|+|+...+...+ .-.++++||||+++.++
T Consensus 432 ~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD------------------- 489 (1373)
T KOG0384|consen 432 ITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD------------------- 489 (1373)
T ss_pred hHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc-------------------
Confidence 999999999998 599999999876653221 12589999999998765
Q ss_pred chhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccC
Q 002744 339 YQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIK 418 (885)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ik 418 (885)
...|..++|.+++|||||++|
T Consensus 490 -----------------------------------------------------------k~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 490 -----------------------------------------------------------KAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred -----------------------------------------------------------HhhhccCCcceeeecHHhhcC
Confidence 244889999999999999999
Q ss_pred CCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhh
Q 002744 419 DRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWN 498 (885)
Q Consensus 419 n~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (885)
|..|.++..+..+...+|+++||||+||++.|||+|++||.|..|... ..|.
T Consensus 511 N~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~----------------------------~~f~ 562 (1373)
T KOG0384|consen 511 NDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSW----------------------------DEFL 562 (1373)
T ss_pred chHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcH----------------------------HHHH
Confidence 999999999999999999999999999999999999999997766321 1122
Q ss_pred hhhcccccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHH
Q 002744 499 RYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTY 578 (885)
Q Consensus 499 ~~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~ 578 (885)
..+ .......+..|+..|+|+||||.|+||... ||++.+.++.|+||+.|+++|+.++.+....+...
T Consensus 563 ~~~----------~~~~e~~~~~L~~~L~P~~lRr~kkdveks--lp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG 630 (1373)
T KOG0384|consen 563 EEF----------DEETEEQVRKLQQILKPFLLRRLKKDVEKS--LPPKEETILRVELSDLQKQYYKAILTKNFSALTKG 630 (1373)
T ss_pred Hhh----------cchhHHHHHHHHHHhhHHHHHHHHhhhccC--CCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhcc
Confidence 211 112334456679999999999999999876 99999999999999999999999999887765432
Q ss_pred HhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhc
Q 002744 579 VQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDS 658 (885)
Q Consensus 579 ~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~ 658 (885)
.. +...+++++++.||+|||||||+......-+... . .|.
T Consensus 631 ----~~-g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~--------~-~~~-------------------------- 670 (1373)
T KOG0384|consen 631 ----AK-GSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDF--------R-DKM-------------------------- 670 (1373)
T ss_pred ----CC-CCCchHHHHHHHHHHhcCCccccCcHHHHHHHhh--------h-hcc--------------------------
Confidence 22 2226899999999999999999842211110000 0 000
Q ss_pred cccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEE
Q 002744 659 SASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVF 738 (885)
Q Consensus 659 ~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIF 738 (885)
....-...+.+|+||-.|-++|-++. ..|||||||
T Consensus 671 -------------------------------------------~d~~L~~lI~sSGKlVLLDKLL~rLk--~~GHrVLIF 705 (1373)
T KOG0384|consen 671 -------------------------------------------RDEALQALIQSSGKLVLLDKLLPRLK--EGGHRVLIF 705 (1373)
T ss_pred -------------------------------------------hHHHHHHHHHhcCcEEeHHHHHHHHh--cCCceEEEh
Confidence 00000112345999999999999984 457999999
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCCCcccccccccCEEEEeCCCCCcch
Q 002744 739 SQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 817 (885)
Q Consensus 739 sq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~ 817 (885)
||++.|+|+|+++|..++|+|.||||++..+-|+++|+.|+. +++-+|||+||+|||+||||+.||+|||||.+|||..
T Consensus 706 SQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQN 785 (1373)
T KOG0384|consen 706 SQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQN 785 (1373)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcch
Confidence 999999999999999999999999999999999999999998 5567899999999999999999999999999999999
Q ss_pred HHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcC-----CCcccccCCCHHHHHhhh
Q 002744 818 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVG-----GSADAFGKLTEADMRFLF 883 (885)
Q Consensus 818 ~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~-----~~~~~~~~~~~~~~~~lf 883 (885)
+.||+.|||||||++.|.|||||+++|+||.|++++..|..+=.+++. +....-...+.++|..|+
T Consensus 786 DLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL 856 (1373)
T KOG0384|consen 786 DLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL 856 (1373)
T ss_pred HHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999665444442 333444566777776654
No 7
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=6e-83 Score=724.73 Aligned_cols=507 Identities=29% Similarity=0.472 Sum_probs=417.8
Q ss_pred CCCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCC
Q 002744 180 ETAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 259 (885)
Q Consensus 180 ~~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (885)
+....|..|...||.||++||+|+.....-.. .||||||||||||+|+|.+++..+..+.. .+ ..-...
T Consensus 964 ~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~L-HGILcDDMGLGKTLQticilAsd~y~r~s---------~~-~e~~~~ 1032 (1549)
T KOG0392|consen 964 PEYKIPVPISAKLRKYQQEGVNWLAFLNKYKL-HGILCDDMGLGKTLQTICILASDHYKRRS---------ES-SEFNRL 1032 (1549)
T ss_pred CccccccchhHHHHHHHHhccHHHHHHHHhcc-cceeeccccccHHHHHHHHHHHHHHhhcc---------cc-hhhccC
Confidence 34666778889999999999999876555554 78999999999999999998877654411 01 111235
Q ss_pred cEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccc--hhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcc
Q 002744 260 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKS 337 (885)
Q Consensus 260 ~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~--~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~ 337 (885)
|.|||||.+|..+|+.|+.+|+| .++|+.|.|....+. ..++.+++||||+|+.+++++..
T Consensus 1033 PSLIVCPsTLtGHW~~E~~kf~p--fL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--------------- 1095 (1549)
T KOG0392|consen 1033 PSLIVCPSTLTGHWKSEVKKFFP--FLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--------------- 1095 (1549)
T ss_pred CeEEECCchhhhHHHHHHHHhcc--hhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH---------------
Confidence 88999999999999999999999 799999999765543 34567889999999999998643
Q ss_pred cchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEeccccc
Q 002744 338 FYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFI 417 (885)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~i 417 (885)
|.++.|+|+|+||+|-|
T Consensus 1096 ---------------------------------------------------------------l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1096 ---------------------------------------------------------------LIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred ---------------------------------------------------------------HHhcccceEEecCccee
Confidence 67788999999999999
Q ss_pred CCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhh
Q 002744 418 KDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWW 497 (885)
Q Consensus 418 kn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (885)
||..++.+++++.|.+.+|++||||||||++.|||+|++||-|. +++.-..|
T Consensus 1113 kN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPG----------------------------fLGtEKqF 1164 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPG----------------------------FLGTEKQF 1164 (1549)
T ss_pred cchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhccc----------------------------ccCcHHHH
Confidence 99999999999999999999999999999999999999999754 34555678
Q ss_pred hhhhcccccccCCCchhhH------HHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHH
Q 002744 498 NRYVATPIQTHGNSYGGRR------AMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSES 571 (885)
Q Consensus 498 ~~~~~~~i~~~~~~~~~~~------~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~ 571 (885)
...|.+||..........+ .+...+|+..-|||+||+|+||..+ |||+++.-.+|+|++.|+++|+.+..+.
T Consensus 1165 qsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~D--LPpKIIQDyyCeLs~lQ~kLY~df~~~~ 1242 (1549)
T KOG0392|consen 1165 QSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKD--LPPKIIQDYYCELSPLQKKLYRDFVKKA 1242 (1549)
T ss_pred HHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhhhhheeeccCHHHHHHHHHHHHHh
Confidence 9999999987655432211 2234568888899999999999998 9999999999999999999999998873
Q ss_pred HHHHHHHHhccccccc--hhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCch
Q 002744 572 QAQFNTYVQAGTVMNN--YAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHA 649 (885)
Q Consensus 572 ~~~~~~~~~~~~~~~~--~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 649 (885)
..........+....+ ..++|.++..+|+.|+||.++.......+ ......| .|
T Consensus 1243 k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l--------a~i~~~l---------------~~- 1298 (1549)
T KOG0392|consen 1243 KQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL--------AAIVSHL---------------AH- 1298 (1549)
T ss_pred ccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH--------HHHHHHH---------------HH-
Confidence 3333332233322222 67899999999999999999854211110 0000000 00
Q ss_pred hhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhc
Q 002744 650 FCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVER 729 (885)
Q Consensus 650 ~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~ 729 (885)
....+-+...|+|+.+|.++|..+--.
T Consensus 1299 -----------------------------------------------------~~~~LHdi~hspKl~AL~qLL~eCGig 1325 (1549)
T KOG0392|consen 1299 -----------------------------------------------------FNSSLHDIQHSPKLSALKQLLSECGIG 1325 (1549)
T ss_pred -----------------------------------------------------hhhhHHHhhhchhHHHHHHHHHHhCCC
Confidence 000122345699999999999986211
Q ss_pred ---C---------CCccEEEEccChhHHHHHHHHHHhC---CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 730 ---D---------GSAKGIVFSQFTSFLDLINYSLHKS---GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 730 ---~---------~~~KvIIFsq~~~~l~~L~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
. .+||+|||||+..|+|++++-|-+. .+.|.|+||++++.+|++++.+||++|.+.|+|++|.+|
T Consensus 1326 ~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVG 1405 (1549)
T KOG0392|consen 1326 NNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVG 1405 (1549)
T ss_pred CCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecc
Confidence 1 4689999999999999999888654 567889999999999999999999999999999999999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKL 874 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~ 874 (885)
|.|||||.||+|||++-+|||..+.||++||||+||+|.|.||||+++||+||+|+.+|+-|..+.+.+++..-..+..+
T Consensus 1406 GLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM 1485 (1549)
T KOG0392|consen 1406 GLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETM 1485 (1549)
T ss_pred ccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred CHHHHHhhhc
Q 002744 875 TEADMRFLFV 884 (885)
Q Consensus 875 ~~~~~~~lf~ 884 (885)
..+++..||.
T Consensus 1486 ~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1486 DTDQLLDLFT 1495 (1549)
T ss_pred CHHHHHHHhc
Confidence 9999999997
No 8
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.9e-81 Score=747.50 Aligned_cols=475 Identities=30% Similarity=0.500 Sum_probs=392.1
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcE
Q 002744 182 AEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKAT 261 (885)
Q Consensus 182 ~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (885)
..+|..+...|+|||++|++||+..+..+ .|||||||||||||+|+|+++..+..... ..+|+
T Consensus 160 ~~qP~~i~~~Lr~YQleGlnWLi~l~~~g-~gGILADEMGLGKTlQaIalL~~L~~~~~----------------~~gp~ 222 (1033)
T PLN03142 160 LVQPSCIKGKMRDYQLAGLNWLIRLYENG-INGILADEMGLGKTLQTISLLGYLHEYRG----------------ITGPH 222 (1033)
T ss_pred ccCChHhccchHHHHHHHHHHHHHHHhcC-CCEEEEeCCCccHHHHHHHHHHHHHHhcC----------------CCCCE
Confidence 34688888899999999999999877665 58999999999999999999887754332 23799
Q ss_pred EEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchh-----hhcCCCEEEecchhhHHhhhhccCCCcccccccCc
Q 002744 262 LVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAK-----QFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGK 336 (885)
Q Consensus 262 LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~-----~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~ 336 (885)
|||||++++.||.+||.+|+| .+++++|+|+...+... ....++||||||+++.+..
T Consensus 223 LIVvP~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~---------------- 284 (1033)
T PLN03142 223 MVVAPKSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEK---------------- 284 (1033)
T ss_pred EEEeChHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHH----------------
Confidence 999999999999999999998 78999999976543221 1246899999999987652
Q ss_pred ccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccc
Q 002744 337 SFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHF 416 (885)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ 416 (885)
..|..+.|++|||||||+
T Consensus 285 --------------------------------------------------------------~~L~k~~W~~VIvDEAHr 302 (1033)
T PLN03142 285 --------------------------------------------------------------TALKRFSWRYIIIDEAHR 302 (1033)
T ss_pred --------------------------------------------------------------HHhccCCCCEEEEcCccc
Confidence 226677899999999999
Q ss_pred cCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhh
Q 002744 417 IKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCW 496 (885)
Q Consensus 417 ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (885)
|||..|.++++++.+.+.+||+|||||++|++.|||+|++||.|..++.. ..
T Consensus 303 IKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~----------------------------~~ 354 (1033)
T PLN03142 303 IKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSA----------------------------ET 354 (1033)
T ss_pred cCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCH----------------------------HH
Confidence 99999999999999999999999999999999999999999998776432 23
Q ss_pred hhhhhcccccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Q 002744 497 WNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 576 (885)
Q Consensus 497 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~ 576 (885)
|..+|.... ..........++.++.++++||+|.+|... ||++.+.++.+.|++.|+.+|..+.......+.
T Consensus 355 F~~~f~~~~------~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~--LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~ 426 (1033)
T PLN03142 355 FDEWFQISG------ENDQQEVVQQLHKVLRPFLLRRLKSDVEKG--LPPKKETILKVGMSQMQKQYYKALLQKDLDVVN 426 (1033)
T ss_pred HHHHHcccc------ccchHHHHHHHHHHhhHHHhhhhHHHHhhh--CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh
Confidence 444443311 112234556678999999999999998765 999999999999999999999999877655433
Q ss_pred HHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhh
Q 002744 577 TYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLF 656 (885)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~ 656 (885)
. + .....+++.++.||++|+||+++....... +. ..
T Consensus 427 ~----g---~~~~~LlnilmqLRk~cnHP~L~~~~ep~~-------------------------~~-~~----------- 462 (1033)
T PLN03142 427 A----G---GERKRLLNIAMQLRKCCNHPYLFQGAEPGP-------------------------PY-TT----------- 462 (1033)
T ss_pred c----c---ccHHHHHHHHHHHHHHhCCHHhhhcccccC-------------------------cc-cc-----------
Confidence 2 1 233467899999999999999863110000 00 00
Q ss_pred hccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEE
Q 002744 657 DSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGI 736 (885)
Q Consensus 657 ~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvI 736 (885)
....+..|+|+..|.++|..+.. .++|||
T Consensus 463 -------------------------------------------------~e~lie~SgKl~lLdkLL~~Lk~--~g~KVL 491 (1033)
T PLN03142 463 -------------------------------------------------GEHLVENSGKMVLLDKLLPKLKE--RDSRVL 491 (1033)
T ss_pred -------------------------------------------------hhHHhhhhhHHHHHHHHHHHHHh--cCCeEE
Confidence 00012348999999999998854 478999
Q ss_pred EEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccC-CCceEEEEecCCCcccccccccCEEEEeCCCCCc
Q 002744 737 VFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNP 815 (885)
Q Consensus 737 IFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp 815 (885)
|||||+.++++|+++|...|++|++|+|+++..+|+++|++|+++ +...|||+||++||+||||+.|++||+||++|||
T Consensus 492 IFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP 571 (1033)
T PLN03142 492 IFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNP 571 (1033)
T ss_pred eehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCCh
Confidence 999999999999999999999999999999999999999999974 3567999999999999999999999999999999
Q ss_pred chHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCc-ccccCCCHHHHHhhhc
Q 002744 816 AVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSA-DAFGKLTEADMRFLFV 884 (885)
Q Consensus 816 ~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~-~~~~~~~~~~~~~lf~ 884 (885)
..+.||+||+||+||+++|+||+|+++|||||+|++++..|..+...++++.. ..-..++.++|..||.
T Consensus 572 ~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~ 641 (1033)
T PLN03142 572 QVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVR 641 (1033)
T ss_pred HHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888886432 2224677888888774
No 9
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-81 Score=681.49 Aligned_cols=541 Identities=33% Similarity=0.529 Sum_probs=425.1
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCc
Q 002744 181 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 260 (885)
Q Consensus 181 ~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (885)
..+.|.++...|+|||+.++.||.+++.+...||||||+||||||+++|++|+............ .....+
T Consensus 315 lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~---------~~~a~~ 385 (901)
T KOG4439|consen 315 LTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKK---------GESASK 385 (901)
T ss_pred ccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhccc---------ccccCC
Confidence 46678999999999999999999999999999999999999999999999999886544321111 011125
Q ss_pred EEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCC-cccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccc
Q 002744 261 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN-RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFY 339 (885)
Q Consensus 261 ~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~-~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~ 339 (885)
||||||++|+.||..|+.+-+....+.|++|||.. +......+..||||||||+.+.+.-..
T Consensus 386 TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~----------------- 448 (901)
T KOG4439|consen 386 TLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDD----------------- 448 (901)
T ss_pred eEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCch-----------------
Confidence 99999999999999999999888899999999998 666788899999999999997652000
Q ss_pred hhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCC
Q 002744 340 QKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD 419 (885)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn 419 (885)
........++|..+.|.+||+||||.|||
T Consensus 449 ---------------------------------------------------e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 449 ---------------------------------------------------ELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred ---------------------------------------------------hhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 00012235789999999999999999999
Q ss_pred CCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhh
Q 002744 420 RRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNR 499 (885)
Q Consensus 420 ~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (885)
+.|+.+.+++.|.+.+||+||||||||++-|+|+|++||+..||+ ++..|.+
T Consensus 478 ~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~----------------------------D~~~Wke 529 (901)
T KOG4439|consen 478 SNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFG----------------------------DLKQWKE 529 (901)
T ss_pred cchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcc----------------------------hHHHHHH
Confidence 999999999999999999999999999999999999999999984 4566888
Q ss_pred hhcccccccCCCchhhHHHHHHHHHHhhHhhhhhccCCccc---ccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHH
Q 002744 500 YVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAA---DLALPPRIVSLRRDSLDIREADYYESLYSESQAQFN 576 (885)
Q Consensus 500 ~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~---~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~ 576 (885)
++..+-..+. .++.-+.+++||||||..... ...||++...++.++|+..|...|+.+.......+.
T Consensus 530 ~i~~~s~~g~----------~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~k 599 (901)
T KOG4439|consen 530 NIDNMSKGGA----------NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFK 599 (901)
T ss_pred hccCccccch----------hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHH
Confidence 7754433222 244567899999999987754 246899999999999999999999999888888776
Q ss_pred HHHhcccc------------------------------------ccchhHHHHHHHHHHHhhcCccceeecccccc---c
Q 002744 577 TYVQAGTV------------------------------------MNNYAHIFDLLTRLRQAVDHPYLVVYSKTASL---R 617 (885)
Q Consensus 577 ~~~~~~~~------------------------------------~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~---~ 617 (885)
.++..... .....+++.++++|||+|+||.+.....+... .
T Consensus 600 q~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~ 679 (901)
T KOG4439|consen 600 QFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMN 679 (901)
T ss_pred HHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhc
Confidence 65432111 11234579999999999999966543221110 0
Q ss_pred CCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCC
Q 002744 618 GETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFK 697 (885)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (885)
+....+.+...... ....+....+.|..-- |. ..+...+..
T Consensus 680 g~~~sde~~~e~~~---l~el~k~~~T~~~~D~-------------------~e-----------d~p~~~~~q------ 720 (901)
T KOG4439|consen 680 GGDDSDEEQLEEDN---LAELEKNDETDCSDDN-------------------CE-----------DLPTAFPDQ------ 720 (901)
T ss_pred CcchhhhhhhhhhH---HHhhhhcccccccccc-------------------cc-----------cccccchhh------
Confidence 11111111000000 0000000000000000 00 000000000
Q ss_pred cchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHh
Q 002744 698 SSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINR 777 (885)
Q Consensus 698 ~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~ 777 (885)
..+....|.|+..+++.+..++ ....+|+||.+||+.++++++..|...|..|..++|....++|+.+|+.
T Consensus 721 --------~Fe~~r~S~Ki~~~l~~le~i~-~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~ 791 (901)
T KOG4439|consen 721 --------AFEPDRPSCKIAMVLEILETIL-TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDE 791 (901)
T ss_pred --------hcccccchhHHHHHHHHHHHHh-hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHH
Confidence 0222345999999999999884 4458999999999999999999999999999999999999999999999
Q ss_pred hccCC-CceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 002744 778 FTEDP-DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 856 (885)
Q Consensus 778 F~~~~-~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K 856 (885)
||... +.+|+|+|+.+||+||||+.|||+|++|.+|||+.+.||-+||+|+||+++|+||||+++||+|++|...|..|
T Consensus 792 FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkK 871 (901)
T KOG4439|consen 792 FNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKK 871 (901)
T ss_pred HHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHH
Confidence 99743 59999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCcc-cccCCCHHHHHhhhc
Q 002744 857 KLVFEGTVGGSAD-AFGKLTEADMRFLFV 884 (885)
Q Consensus 857 ~~~~~~~~~~~~~-~~~~~~~~~~~~lf~ 884 (885)
..+...++.|... .+++++..||+.||.
T Consensus 872 ldlA~~VL~G~~tr~~~kLT~adlk~LFg 900 (901)
T KOG4439|consen 872 LDLAKGVLTGSATRKMNKLTLADLKKLFG 900 (901)
T ss_pred HHHHhhhccCccccccccccHHHHHHHhC
Confidence 9999999987665 789999999999996
No 10
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-81 Score=704.93 Aligned_cols=568 Identities=29% Similarity=0.434 Sum_probs=423.2
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCc
Q 002744 181 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 260 (885)
Q Consensus 181 ~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (885)
....|..+...||.||+.|+.||...++... +||||||||||||||+|+|++++.=...+| ||
T Consensus 605 ktpvPsLLrGqLReYQkiGLdWLatLYeknl-NGILADEmGLGKTIQtISllAhLACeegnW----------------GP 667 (1958)
T KOG0391|consen 605 KTPVPSLLRGQLREYQKIGLDWLATLYEKNL-NGILADEMGLGKTIQTISLLAHLACEEGNW----------------GP 667 (1958)
T ss_pred ccCchHHHHHHHHHHHHhhHHHHHHHHHhcc-cceehhhhcccchhHHHHHHHHHHhcccCC----------------CC
Confidence 3556777889999999999999999887775 999999999999999999999887666665 67
Q ss_pred EEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhh-----hcCCCEEEecchhhHHhhhhccCCCcccccccC
Q 002744 261 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ-----FSEFDFVITTYSIIEADYRKHVMPPKQKCQYCG 335 (885)
Q Consensus 261 ~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~-----l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~ 335 (885)
.|||||.+++-+|.-||++|+| .++|+.|+|+.+.+..++ -+.|+|.||+|..+..+...
T Consensus 668 HLIVVpTsviLnWEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A------------- 732 (1958)
T KOG0391|consen 668 HLIVVPTSVILNWEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA------------- 732 (1958)
T ss_pred ceEEeechhhhhhhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-------------
Confidence 7999999999999999999999 899999999988765433 25689999999999877432
Q ss_pred cccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEeccc
Q 002744 336 KSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAH 415 (885)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH 415 (885)
|...+|.|+||||||
T Consensus 733 -----------------------------------------------------------------FkrkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 733 -----------------------------------------------------------------FKRKRWQYLVLDEAQ 747 (1958)
T ss_pred -----------------------------------------------------------------HHhhccceeehhhhh
Confidence 566689999999999
Q ss_pred ccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhh
Q 002744 416 FIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFC 495 (885)
Q Consensus 416 ~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (885)
+|||..|.+|+++..+++..|++|||||+||++.|||+|++||-|..|. +.+
T Consensus 748 nIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~----------------------------shd 799 (1958)
T KOG0391|consen 748 NIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFA----------------------------SHD 799 (1958)
T ss_pred hhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhh----------------------------hhh
Confidence 9999999999999999999999999999999999999999999877663 334
Q ss_pred hhhhhhcccccccCCCch-hhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHH
Q 002744 496 WWNRYVATPIQTHGNSYG-GRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQ 574 (885)
Q Consensus 496 ~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~ 574 (885)
.|+.||.+|+..--.... -....+.+||+++++|+|||+|.||.+. +|.+.+++++|.|+..|+.+|+.+..+....
T Consensus 800 ~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQ--lpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK 877 (1958)
T KOG0391|consen 800 IFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQ--LPKKYEHVVKCRLSKRQRALYDDFMSQPGTK 877 (1958)
T ss_pred hHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHh--cchhhhhheeeehhhhHHHHHHHHhhccchh
Confidence 567777777764322211 1245677789999999999999999776 9999999999999999999999987654332
Q ss_pred HHHHHhccccccchhHHHHHHHHHHHhhcCccceeeccccc---------------------------------------
Q 002744 575 FNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTAS--------------------------------------- 615 (885)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~--------------------------------------- 615 (885)
..-..+++.++++++++||++||||.|+....-.+
T Consensus 878 ------etLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~ 951 (1958)
T KOG0391|consen 878 ------ETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTS 951 (1958)
T ss_pred ------hHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcc
Confidence 12234567889999999999999998873211000
Q ss_pred --------------------ccCCC--------------------------hhhh-------------------h-----
Q 002744 616 --------------------LRGET--------------------------EADA-------------------E----- 625 (885)
Q Consensus 616 --------------------~~~~~--------------------------~~~~-------------------~----- 625 (885)
+.... .+.. .
T Consensus 952 ~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p 1031 (1958)
T KOG0391|consen 952 AVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGP 1031 (1958)
T ss_pred cccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCc
Confidence 00000 0000 0
Q ss_pred --hhhhh-----------hc-----cc-----------cCcCCCC-----------------------------------
Q 002744 626 --HVQQV-----------CG-----LC-----------NDLADDP----------------------------------- 641 (885)
Q Consensus 626 --~~~~~-----------~~-----~~-----------~~~~~~~----------------------------------- 641 (885)
.+.+. |. .| ......+
T Consensus 1032 ~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gt 1111 (1958)
T KOG0391|consen 1032 QSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGT 1111 (1958)
T ss_pred HhHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcch
Confidence 00000 00 00 0000000
Q ss_pred -------------------------------------c---------------cccCC-------chhhhhh------hh
Q 002744 642 -------------------------------------V---------------VTNCG-------HAFCKAC------LF 656 (885)
Q Consensus 642 -------------------------------------~---------------~~~c~-------~~~c~~c------~~ 656 (885)
+ +.... ..+-..| ++
T Consensus 1112 at~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iI 1191 (1958)
T KOG0391|consen 1112 ATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDII 1191 (1958)
T ss_pred hhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHH
Confidence 0 00000 0011111 11
Q ss_pred hccccc---cCC---CCCCCCCCccccccc-----cCCCCCCCccccccCCCcchhhhhhcccccC-cchHHHHHHHHHH
Q 002744 657 DSSASK---FVA---KCPTCSIPLTVDFTA-----NEGAGNRTSKTTIKGFKSSSILNRIQLDEFQ-SSTKIEALREEIR 724 (885)
Q Consensus 657 ~~~~~~---~~~---~cp~c~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~S~Kl~~L~~lL~ 724 (885)
+...-. ... .|-.|+-+-.+.... .........-.+ ........+..-.+..+. .++|+..|.=+|+
T Consensus 1192 drfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~-~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLq 1270 (1958)
T KOG0391|consen 1192 DRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQ-RQTTAPRLLQFPELRLIQYDCGKLQTLAILLQ 1270 (1958)
T ss_pred HHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccch-hhccchhhhcCcchheeecccchHHHHHHHHH
Confidence 111110 011 233333322111100 000000000000 011111112221222222 3899999999999
Q ss_pred HHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccC
Q 002744 725 FMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVAS 804 (885)
Q Consensus 725 ~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~ 804 (885)
++.. .+|+||||+|++.|+|+|+.+|..+|+.|+||||.++.++|+.++++||.+..++|||+||+.||+||||+.||
T Consensus 1271 QLk~--eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1271 QLKS--EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred HHHh--cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 9844 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCCCHHHHHhhhc
Q 002744 805 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 884 (885)
Q Consensus 805 ~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~lf~ 884 (885)
+|||||.+|||..+.||-+|+|||||+++|+|||||.+.||||+|+.....|+.+-+-++.|..-...-+...+++.||.
T Consensus 1349 TVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1349 TVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred eEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998888888776666677788888885
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.4e-75 Score=652.13 Aligned_cols=466 Identities=30% Similarity=0.500 Sum_probs=390.4
Q ss_pred CCCCCcccc-cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCC
Q 002744 181 TAEDPPDLI-TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 259 (885)
Q Consensus 181 ~~~~p~~~~-~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (885)
..++|..+. ..|++||+.|+.||...+.... +||||||||||||+|+|++|.++.+.... .+
T Consensus 383 v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnL-NGILADEMGLGKTIQtIsLitYLmE~K~~----------------~G 445 (1157)
T KOG0386|consen 383 VAKQPSSLQGGELKEYQLHGLQWMVSLYNNNL-NGILADEMGLGKTIQTISLITYLMEHKQM----------------QG 445 (1157)
T ss_pred cccCcchhcCCCCchhhhhhhHHHhhccCCCc-ccccchhcccchHHHHHHHHHHHHHHccc----------------CC
Confidence 345565553 5799999999999999877765 89999999999999999999998876554 37
Q ss_pred cEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccch----hhhcCCCEEEecchhhHHhhhhccCCCcccccccC
Q 002744 260 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA----KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCG 335 (885)
Q Consensus 260 ~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~----~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~ 335 (885)
|.|||||.+++.+|..||.+|.| .+..++|.|+...+.. .....|+|++|||+-+.++
T Consensus 446 P~LvivPlstL~NW~~Ef~kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd---------------- 507 (1157)
T KOG0386|consen 446 PFLIIVPLSTLVNWSSEFPKWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD---------------- 507 (1157)
T ss_pred CeEEeccccccCCchhhcccccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC----------------
Confidence 99999999999999999999999 8999999998776642 2347899999999987553
Q ss_pred cccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEeccc
Q 002744 336 KSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAH 415 (885)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH 415 (885)
+..|.++.|.++||||+|
T Consensus 508 --------------------------------------------------------------k~lLsKI~W~yMIIDEGH 525 (1157)
T KOG0386|consen 508 --------------------------------------------------------------KALLSKISWKYMIIDEGH 525 (1157)
T ss_pred --------------------------------------------------------------HHHHhccCCcceeecccc
Confidence 244889999999999999
Q ss_pred ccCCCCcHHHHHHH-hcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchh
Q 002744 416 FIKDRRSNTAKAVL-ALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHF 494 (885)
Q Consensus 416 ~ikn~~s~~~~~~~-~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (885)
++||..++++..+. ...+.+|++|||||+||++.|||+||+||-|..| .+-
T Consensus 526 RmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IF----------------------------nS~ 577 (1157)
T KOG0386|consen 526 RMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIF----------------------------NSC 577 (1157)
T ss_pred cccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchh----------------------------hhH
Confidence 99999999999998 6799999999999999999999999999986655 344
Q ss_pred hhhhhhhcccccccCCC----chhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHH
Q 002744 495 CWWNRYVATPIQTHGNS----YGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSE 570 (885)
Q Consensus 495 ~~~~~~~~~~i~~~~~~----~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~ 570 (885)
..|.++|..|+...+.. ....--.+.++|.+|+||++||.|++|... ||.+++.++.|.+|..|+.+|..+.+.
T Consensus 578 ~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~--LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 578 KAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQE--LPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred hHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhh--CchhhhHhhheehhhhhHhhhHHHHhC
Confidence 55777788888877732 123334566789999999999999999776 899999999999999999999887643
Q ss_pred HHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchh
Q 002744 571 SQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAF 650 (885)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 650 (885)
-.-.. ........+..+++.++.||++||||+++..- ...|..+.+.
T Consensus 656 g~l~~----d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~v----------------e~~~~~~~~~------------- 702 (1157)
T KOG0386|consen 656 GQLLK----DTAKGKKGYKPLFNTIMQLRKLCNHPYLFANV----------------ENSYTLHYDI------------- 702 (1157)
T ss_pred CCCCc----CchhccccchhhhhHhHHHHHhcCCchhhhhh----------------ccccccccCh-------------
Confidence 22111 11223445678899999999999999987210 0001000000
Q ss_pred hhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcC
Q 002744 651 CKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERD 730 (885)
Q Consensus 651 c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~ 730 (885)
.+-+..++|+..|..+|-++.+
T Consensus 703 --------------------------------------------------------~dL~R~sGKfELLDRiLPKLka-- 724 (1157)
T KOG0386|consen 703 --------------------------------------------------------KDLVRVSGKFELLDRILPKLKA-- 724 (1157)
T ss_pred --------------------------------------------------------hHHHHhccHHHHHHhhhHHHHh--
Confidence 1123348899999999999854
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCCCcccccccccCEEEEe
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLM 809 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~agg~GlNL~~A~~VI~~ 809 (885)
.+|+||.|+|++.++++++++|...+++|.++||+++.++|..+++.||. +..+++||+||++||.|||||.|++||+|
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 47999999999999999999999999999999999999999999999998 56789999999999999999999999999
Q ss_pred CCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 002744 810 DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTV 864 (885)
Q Consensus 810 D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~ 864 (885)
|++|||..+.||.+|||||||+++|.|+||++.+++||+|+..+..|..+-..++
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kvi 859 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVI 859 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhh
Confidence 9999999999999999999999999999999999999999999998866655554
No 12
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-71 Score=626.46 Aligned_cols=497 Identities=26% Similarity=0.346 Sum_probs=393.6
Q ss_pred CcccccccHHHHHHHHHHHHHhhhc-----cCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCC
Q 002744 185 PPDLITPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIK 259 (885)
Q Consensus 185 p~~~~~~L~~yQ~~~v~~l~~~~~~-----~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (885)
-|.+...|||||++|+.||...... ...|||+||+||+|||+|.|+++..+++..+.+.+ ...
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~------------~~~ 299 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP------------LIN 299 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc------------ccc
Confidence 3456778999999999998876542 34699999999999999999999999886654322 346
Q ss_pred cEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhh---------hcCCCEEEecchhhHHhhhhccCCCccc
Q 002744 260 ATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ---------FSEFDFVITTYSIIEADYRKHVMPPKQK 330 (885)
Q Consensus 260 ~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~---------l~~~dvvItty~~l~~~~~~~~~~~~~~ 330 (885)
..|||||.+|+.+|.+||.+|..+..+..+.++|..+..+... .-..-|.+.+|+++......
T Consensus 300 k~lVV~P~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-------- 371 (776)
T KOG0390|consen 300 KPLVVAPSSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-------- 371 (776)
T ss_pred ccEEEccHHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--------
Confidence 7899999999999999999999876888999998877522111 11345789999998765433
Q ss_pred ccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEE
Q 002744 331 CQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERII 410 (885)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vI 410 (885)
+....+++||
T Consensus 372 ----------------------------------------------------------------------il~~~~glLV 381 (776)
T KOG0390|consen 372 ----------------------------------------------------------------------ILLIRPGLLV 381 (776)
T ss_pred ----------------------------------------------------------------------HhcCCCCeEE
Confidence 5566789999
Q ss_pred EecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCC
Q 002744 411 LDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNS 490 (885)
Q Consensus 411 lDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (885)
+||+|+.||..|.+++++.++.+++|++|||||+||++.|+|++|+|..|. +
T Consensus 382 cDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~----------------------------~ 433 (776)
T KOG0390|consen 382 CDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPG----------------------------F 433 (776)
T ss_pred ECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChh----------------------------h
Confidence 999999999999999999999999999999999999999999999998854 4
Q ss_pred cchhhhhhhhhcccccccCCCchhh-----HHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHH
Q 002744 491 VRHFCWWNRYVATPIQTHGNSYGGR-----RAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYE 565 (885)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~ 565 (885)
+++...|.+.+..++...+...... .+....|..+...|++||+-...... ||++.+.++.+.+++.|.+.|.
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~--LP~k~e~vv~~n~t~~Q~~~~~ 511 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKY--LPGKYEYVVFCNPTPIQKELYK 511 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhh--CCCceeEEEEeCCcHHHHHHHH
Confidence 4666778888888887755533211 22245567899999999998665555 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCcccc
Q 002744 566 SLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 645 (885)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (885)
.+.... .. ..+ . ...+..+..|+++|+||.|+.......-.... ..+
T Consensus 512 ~l~~~~-~~-~~~-------~--~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~------------------~~~---- 558 (776)
T KOG0390|consen 512 KLLDSM-KM-RTL-------K--GYALELITKLKKLCNHPSLLLLCEKTEKEKAF------------------KNP---- 558 (776)
T ss_pred HHHHHH-Hh-hhh-------h--cchhhHHHHHHHHhcCHHhhcccccccccccc------------------cCh----
Confidence 998764 11 100 0 11567889999999999988421110000000 000
Q ss_pred CCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHH
Q 002744 646 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF 725 (885)
Q Consensus 646 c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~ 725 (885)
....... .-.....+...|.|+..|+.+|..
T Consensus 559 -------------------------------~~~~~~~------------------~~~~~~~~~~ks~kl~~L~~ll~~ 589 (776)
T KOG0390|consen 559 -------------------------------ALLLDPG------------------KLKLDAGDGSKSGKLLVLVFLLEV 589 (776)
T ss_pred -------------------------------Hhhhccc------------------ccccccccchhhhHHHHHHHHHHH
Confidence 0000000 000011112248899999999866
Q ss_pred HHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCc-eEEEEecCCCcccccccccC
Q 002744 726 MVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDC-KIFLMSLKAGGVALNLTVAS 804 (885)
Q Consensus 726 ~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~-~VlL~St~agg~GlNL~~A~ 804 (885)
..++ ...++++-++|+.++++++..+...|+.++++||+|+..+|+.+|+.||+.++. +|||+|++|||+||||..|+
T Consensus 590 ~~ek-~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAs 668 (776)
T KOG0390|consen 590 IREK-LLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGAS 668 (776)
T ss_pred Hhhh-cceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccc
Confidence 6544 367888889999999999999999999999999999999999999999996666 99999999999999999999
Q ss_pred EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCCCHHHHHhhhc
Q 002744 805 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 884 (885)
Q Consensus 805 ~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~lf~ 884 (885)
|||+|||+|||+.+.||++||||.||+|+|+||||++.||+||+||++|..|+.+-.-+++.....=...+.++++.||.
T Consensus 669 Rlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~ 748 (776)
T KOG0390|consen 669 RLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFD 748 (776)
T ss_pred eEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988887666555556678887774
No 13
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.3e-69 Score=598.95 Aligned_cols=584 Identities=22% Similarity=0.283 Sum_probs=404.9
Q ss_pred ccCCCCCCcccccccHHHHHHHHHHHHHhh--------hccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCC
Q 002744 178 MTETAEDPPDLITPLLRYQKEWLAWALKQE--------ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASS 249 (885)
Q Consensus 178 ~~~~~~~p~~~~~~L~~yQ~~~v~~l~~~~--------~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~ 249 (885)
..+....|..+...|+|||..||+||..-. ...+.||||||-||||||+|+|+|+...+....
T Consensus 655 ~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~k--------- 725 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDK--------- 725 (1567)
T ss_pred ccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhc---------
Confidence 345567788888999999999999987543 235679999999999999999999877765332
Q ss_pred CCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCC-C---CceEEEEeCCCccc-ch---hh-hcCCCEEEecchhhHHhh
Q 002744 250 SSSTGLLGIKATLVICPVAAVTQWVSEINRFTSV-G---STKVLIYHGSNRER-SA---KQ-FSEFDFVITTYSIIEADY 320 (885)
Q Consensus 250 ~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~-~---~~~v~v~~g~~~~~-~~---~~-l~~~dvvItty~~l~~~~ 320 (885)
.+++++|||||.+++.||.+||.+|.+. . .+.|.-+..-++.. .. +. ..+..|+|+.|++++...
T Consensus 726 ------lg~ktaLvV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa 799 (1567)
T KOG1015|consen 726 ------LGFKTALVVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLA 799 (1567)
T ss_pred ------cCCceEEEEcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHh
Confidence 2668999999999999999999999983 1 22333222222211 11 11 135579999999987642
Q ss_pred hhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002744 321 RKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSP 400 (885)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (885)
... .+. .+++.... ...
T Consensus 800 ~gr-------------------------------~vk--------~rk~ke~f------------------------~k~ 816 (1567)
T KOG1015|consen 800 QGR-------------------------------NVK--------SRKLKEIF------------------------NKA 816 (1567)
T ss_pred ccc-------------------------------chh--------hhHHHHHH------------------------HHh
Confidence 110 000 00000000 112
Q ss_pred CccceecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCC
Q 002744 401 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSS 480 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~ 480 (885)
|..-++|+||+||||.+||..|.+++++..+.+++|++|||||+||++.|+|.|++|+.+
T Consensus 817 lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe-------------------- 876 (1567)
T KOG1015|consen 817 LVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKE-------------------- 876 (1567)
T ss_pred ccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhccc--------------------
Confidence 556678999999999999999999999999999999999999999999999999999974
Q ss_pred CCCCCCCCCCcchhhhhhhhhcccccccCCCchhhHH------HHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeec
Q 002744 481 AECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRA------MILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRD 554 (885)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~ 554 (885)
++++....|...|.+||+.+......... ....|+.+|..++-|+-..-+... |||++++++.+
T Consensus 877 --------~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~--LPPK~eyVi~v 946 (1567)
T KOG1015|consen 877 --------NLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKF--LPPKHEYVIAV 946 (1567)
T ss_pred --------ccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--CCCceeEEEEE
Confidence 44566677899999999999887653222 223457788999988876655555 99999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc---chhHHHHHHHHHHHhhcCccceeecccccccCCC-hhhhhhhhhh
Q 002744 555 SLDIREADYYESLYSESQAQFNTYVQAGTVMN---NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGET-EADAEHVQQV 630 (885)
Q Consensus 555 ~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~-~~~~~~~~~~ 630 (885)
.|++.|..+|+.++. .... .++.... ....+|..+..|+++.+||+.+............ .++. ..
T Consensus 947 rltelQ~~LYq~yL~-h~~~-----~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~sedd----m~ 1016 (1567)
T KOG1015|consen 947 RLTELQCKLYQYYLD-HLTG-----VGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDD----MD 1016 (1567)
T ss_pred eccHHHHHHHHHHHh-hccc-----cCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccc----hh
Confidence 999999999999886 2221 1122222 3467889999999999999976432221111110 0000 01
Q ss_pred hccccCcCCCCccccCCchhhhhhhhhc-c---ccccCCCCCC-----------CCCCccccccccCCCCCCCccccccC
Q 002744 631 CGLCNDLADDPVVTNCGHAFCKACLFDS-S---ASKFVAKCPT-----------CSIPLTVDFTANEGAGNRTSKTTIKG 695 (885)
Q Consensus 631 ~~~~~~~~~~~~~~~c~~~~c~~c~~~~-~---~~~~~~~cp~-----------c~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (885)
-.+|.+..++..-+.. .-.|...-... . .+........ -+.-...+... .+...........+
T Consensus 1017 ~fi~D~sde~e~s~~s-~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~-~g~~~D~~l~ll~d 1094 (1567)
T KOG1015|consen 1017 EFIADDSDETEMSLSS-DDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDE-TGNNPDVSLKLLED 1094 (1567)
T ss_pred ccccCCCccccccccc-cchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccc-cCCCcchHHHHhhc
Confidence 1112211111100000 00111100000 0 0000000000 00000000000 00000000000000
Q ss_pred CC--cc-----------hhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh--------
Q 002744 696 FK--SS-----------SILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-------- 754 (885)
Q Consensus 696 ~~--~~-----------~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-------- 754 (885)
.+ +. .++.....+.+..|+||-.|+++|+..- .-|.|+|||||....+++|+.+|..
T Consensus 1095 lag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mce--eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~ 1172 (1567)
T KOG1015|consen 1095 LAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCE--EIGDKLLVFSQSLISLDLIEDFLELVSREGKED 1172 (1567)
T ss_pred ccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHH--HhcceeEEeecccchhHHHHHHHHhhcccCccc
Confidence 00 00 2344444566778999999999999883 3478999999999999999999974
Q ss_pred --------------CCCcEEEEecCCCHHHHHHHHHhhccCCC--ceEEEEecCCCcccccccccCEEEEeCCCCCcchH
Q 002744 755 --------------SGVNCVQLVGSMSIPARDAAINRFTEDPD--CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVE 818 (885)
Q Consensus 755 --------------~gi~~~~i~G~~~~~~R~~~i~~F~~~~~--~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~ 818 (885)
.|..|.+|||+++..+|++..++||+..+ .++||+||+||++||||.+||+|||||..|||+.+
T Consensus 1173 ~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyD 1252 (1567)
T KOG1015|consen 1173 KDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYD 1252 (1567)
T ss_pred cccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccc
Confidence 37889999999999999999999998544 46799999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCCCHHHHHhhhc
Q 002744 819 QQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 884 (885)
Q Consensus 819 ~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~lf~ 884 (885)
.|+|-|+||+||++||+||||++.||+||+||.||..|+.+...+++. ..+-..++.+||..||.
T Consensus 1253 tQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDe-qQv~Rhy~~neLteLy~ 1317 (1567)
T KOG1015|consen 1253 TQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDE-QQVERHYTMNELTELYT 1317 (1567)
T ss_pred hHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhH-HHHHHHhhHhhhHHHhh
Confidence 999999999999999999999999999999999999999998888853 23346788999999885
No 14
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=3.2e-68 Score=610.95 Aligned_cols=529 Identities=38% Similarity=0.632 Sum_probs=446.9
Q ss_pred HHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHH
Q 002744 194 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQW 273 (885)
Q Consensus 194 ~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW 273 (885)
.+|..+..|+.....+..+|||+||+||+|||+++|++++........ ..+....+.+|||||.+++.||
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~----------~~~~~~~kttLivcp~s~~~qW 204 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKE----------EDRQKEFKTTLIVCPTSLLTQW 204 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcc----------hhhccccCceeEecchHHHHHH
Confidence 677777777666677778999999999999999999999877643320 1122345899999999999999
Q ss_pred HHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhhhhhccCC
Q 002744 274 VSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGP 353 (885)
Q Consensus 274 ~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (885)
..|+.+...+..+.+++|+| +......+..+|||||||.++..
T Consensus 205 ~~elek~~~~~~l~v~v~~g--r~kd~~el~~~dVVltTy~il~~----------------------------------- 247 (674)
T KOG1001|consen 205 KTELEKVTEEDKLSIYVYHG--RTKDKSELNSYDVVLTTYDILKN----------------------------------- 247 (674)
T ss_pred HHHHhccCCccceEEEEecc--cccccchhcCCceEEeeHHHhhc-----------------------------------
Confidence 99998888888999999999 66667788999999999999853
Q ss_pred cchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHHHHHHhccc
Q 002744 354 SAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALES 433 (885)
Q Consensus 354 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~~~~~~l~~ 433 (885)
+++..+.|-+||+||||.++|.+++.++++..+.+
T Consensus 248 ---------------------------------------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a 282 (674)
T KOG1001|consen 248 ---------------------------------------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDA 282 (674)
T ss_pred ---------------------------------------------ccccceeEEEEEeccccccCCcchHhhhhheeecc
Confidence 33777899999999999999999999999999999
Q ss_pred ccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhcccccccCCCch
Q 002744 434 SYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYG 513 (885)
Q Consensus 434 ~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 513 (885)
.+||+|||||+||++.|+|++++|+..+||. +..+|...+..|+....+
T Consensus 283 ~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~----------------------------~~~~~~~~i~~p~~~~~~--- 331 (674)
T KOG1001|consen 283 KYRWCLTGTPIQNNLDELYSLFKFLEIHPYC----------------------------DQNYFKLLIQDPDERNKY--- 331 (674)
T ss_pred ceeeeecCChhhhhHHHHHHHHHHhhcCCch----------------------------hhHHHHHHhcChhhhhhH---
Confidence 9999999999999999999999999988884 335678788887776553
Q ss_pred hhHHHHHHHHHHhhHhhhhhccCCcc---cccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Q 002744 514 GRRAMILLKHKVLRSVILRRTKKGRA---ADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAH 590 (885)
Q Consensus 514 ~~~~~~~~l~~ll~~~~lRr~k~dv~---~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 590 (885)
......++.+++.+++||+|.... +.+.+||+.+.+..+.++..++.+|..+.......+..+...+.+..++..
T Consensus 332 --~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~ 409 (674)
T KOG1001|consen 332 --KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAF 409 (674)
T ss_pred --HHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHH
Confidence 344555678999999999987432 345799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCccceeecccccccCCCh----hhh-hhhh--hhhccccCcCCCCccccCCchhhhhhhhhcccccc
Q 002744 591 IFDLLTRLRQAVDHPYLVVYSKTASLRGETE----ADA-EHVQ--QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKF 663 (885)
Q Consensus 591 ~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~----~~~-~~~~--~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~ 663 (885)
++..+.++||+|+||.++..........+.. ... ..+. ..|.+|.+ .+.++++.|+|.+|..|+........
T Consensus 410 ~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~ 488 (674)
T KOG1001|consen 410 FLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE 488 (674)
T ss_pred HHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccc-cccceeecccchHHHHHHHhcccccc
Confidence 9999999999999999987554332221111 111 1111 68999999 88899999999999999999999888
Q ss_pred CCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChh
Q 002744 664 VAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTS 743 (885)
Q Consensus 664 ~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~ 743 (885)
...||.|+..+..+.............. ....|.|+.++.+.|........ .|+|||||++.
T Consensus 489 ~~~~~~cr~~l~~~~l~s~~~~~~~~~~-----------------~~~~s~ki~~~~~~l~~~~~s~~-~kiiifsq~~~ 550 (674)
T KOG1001|consen 489 NAPCPLCRNVLKEKKLLSANPLPSIIND-----------------LLPESSKIYAFLKILQAKEMSEQ-PKIVIFSQLIW 550 (674)
T ss_pred CCCCcHHHHHHHHHHHhhcccccchhhh-----------------ccchhhhhHHHHHHHhhccCCCC-CceeeehhHHH
Confidence 8899999987765433321111100000 00158999999999984432233 59999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhh
Q 002744 744 FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 823 (885)
Q Consensus 744 ~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~Qaig 823 (885)
+++++...|...++.+.+++|.++...|.+.+..|..++...|+++|++||+.||||+.|+|||++||+|||..++|||+
T Consensus 551 ~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaid 630 (674)
T KOG1001|consen 551 GLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAID 630 (674)
T ss_pred HHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCC
Q 002744 824 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG 866 (885)
Q Consensus 824 R~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~ 866 (885)
||||+||+++|.|++|++++|+||+|+.+|++|+.+...+++.
T Consensus 631 R~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 631 RAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999999999999888764
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=9e-61 Score=597.52 Aligned_cols=505 Identities=38% Similarity=0.589 Sum_probs=403.4
Q ss_pred cccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEe
Q 002744 186 PDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC 265 (885)
Q Consensus 186 ~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~ 265 (885)
..+...|+|||.+|+.|+...+.....||||||+||+|||+|+|+++......... ..+++||||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~---------------~~~~~liv~ 397 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV---------------YLGPALIVV 397 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC---------------CCCCeEEEe
Confidence 56668899999999999884455555799999999999999999999874332221 136999999
Q ss_pred chhhHHHHHHHHHHhcCCCCce-EEEEeCCCcc-----cchhhhcC------CCEEEecchhhHHhhhhccCCCcccccc
Q 002744 266 PVAAVTQWVSEINRFTSVGSTK-VLIYHGSNRE-----RSAKQFSE------FDFVITTYSIIEADYRKHVMPPKQKCQY 333 (885)
Q Consensus 266 P~sll~qW~~Ei~k~~~~~~~~-v~v~~g~~~~-----~~~~~l~~------~dvvItty~~l~~~~~~~~~~~~~~~~~ 333 (885)
|.+++.+|.+|+.+|.| .++ +.+++|.... .....+.. ++++++||+.+.....
T Consensus 398 p~s~~~nw~~e~~k~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~------------ 463 (866)
T COG0553 398 PASLLSNWKREFEKFAP--DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLV------------ 463 (866)
T ss_pred cHHHHHHHHHHHhhhCc--cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhh------------
Confidence 99999999999999998 677 9999998852 22333333 8999999999987310
Q ss_pred cCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEec
Q 002744 334 CGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDE 413 (885)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDE 413 (885)
+...+..+.|+++|+||
T Consensus 464 ---------------------------------------------------------------~~~~l~~~~~~~~v~DE 480 (866)
T COG0553 464 ---------------------------------------------------------------DHGGLKKIEWDRVVLDE 480 (866)
T ss_pred ---------------------------------------------------------------hHHHHhhceeeeeehhh
Confidence 01337788999999999
Q ss_pred ccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHH-HhccCCCCccccccccccccccCCCCCCCCCCCCcc
Q 002744 414 AHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVR-FLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVR 492 (885)
Q Consensus 414 aH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~-fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (885)
||+|||..|..+++++.+++.+|++|||||++|++.|||++++ |+.|..+. .
T Consensus 481 a~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~---------------------------~ 533 (866)
T COG0553 481 AHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLG---------------------------T 533 (866)
T ss_pred HHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCcccc---------------------------c
Confidence 9999999999999999999999999999999999999999999 99876552 1
Q ss_pred hhhhhhhhhcccccccCCCc--hhhHHHHHHHHHHhhHhhhhhccCC--cccccCCCCeEEEEeecCCCHHHHHHHHHHH
Q 002744 493 HFCWWNRYVATPIQTHGNSY--GGRRAMILLKHKVLRSVILRRTKKG--RAADLALPPRIVSLRRDSLDIREADYYESLY 568 (885)
Q Consensus 493 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~ll~~~~lRr~k~d--v~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~ 568 (885)
.+..|...|..++....... .........++.+++++++||++.+ +..+ +|++.+....+.++..|..+|..+.
T Consensus 534 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~--Lp~k~e~~~~~~l~~~q~~~y~~~~ 611 (866)
T COG0553 534 SFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKE--LPPKIEKVLECELSEEQRELYEALL 611 (866)
T ss_pred hHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHh--CChhhhhhhhhcccHHHHHHHHHHH
Confidence 35667888888877666532 1122233336789999999999999 5444 9999999999999999999999998
Q ss_pred H---HHHHHHHHHHhcccc--cc--chhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCC
Q 002744 569 S---ESQAQFNTYVQAGTV--MN--NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 641 (885)
Q Consensus 569 ~---~~~~~~~~~~~~~~~--~~--~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (885)
. .....+......... .. ....++..++++|++|+||.++........ +..+.....+.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~--------------~~~~~~~~~~~ 677 (866)
T COG0553 612 EGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF--------------DRIVLLLREDK 677 (866)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc--------------chhhhhhhccc
Confidence 8 555554443332211 11 256789999999999999998853310000 00000000000
Q ss_pred ccccCCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcc-hHHHHHH
Q 002744 642 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSS-TKIEALR 720 (885)
Q Consensus 642 ~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S-~Kl~~L~ 720 (885)
....|. ...+..| .|+..+.
T Consensus 678 ~~~~~~-----------------------------------------------------------~~~~~~s~~k~~~l~ 698 (866)
T COG0553 678 DFDYLK-----------------------------------------------------------KPLIQLSKGKLQALD 698 (866)
T ss_pred cccccc-----------------------------------------------------------chhhhccchHHHHHH
Confidence 000000 1112236 7999999
Q ss_pred HHH-HHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccc
Q 002744 721 EEI-RFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALN 799 (885)
Q Consensus 721 ~lL-~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlN 799 (885)
++| ......+..+|+|||+||+.++++|+..|...++.+++++|+++..+|+.+|++|+++++..||++|+++||.|||
T Consensus 699 ~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~gln 778 (866)
T COG0553 699 ELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLN 778 (866)
T ss_pred HHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEeccccccee
Confidence 999 6665543113999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCC-CcccccCCCHHH
Q 002744 800 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGG-SADAFGKLTEAD 878 (885)
Q Consensus 800 L~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~-~~~~~~~~~~~~ 878 (885)
|+.|++||+|||+|||+.+.||++|+||+||+++|.||+|+++||+||+|++++..|+.+...++++ .......++.++
T Consensus 779 Lt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~ 858 (866)
T COG0553 779 LTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIED 858 (866)
T ss_pred ecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 778888999999
Q ss_pred HHhhhc
Q 002744 879 MRFLFV 884 (885)
Q Consensus 879 ~~~lf~ 884 (885)
+..||.
T Consensus 859 ~~~l~~ 864 (866)
T COG0553 859 LLDLFS 864 (866)
T ss_pred HHHHhc
Confidence 999985
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-56 Score=464.65 Aligned_cols=426 Identities=26% Similarity=0.384 Sum_probs=315.4
Q ss_pred CcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEE
Q 002744 185 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 264 (885)
Q Consensus 185 p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV 264 (885)
|+.+...|.|||++|+.+++.+ ++..+||||||||||+|||+++.+++.. +|.|||
T Consensus 192 d~kLvs~LlPFQreGv~faL~R----gGR~llADeMGLGKTiQAlaIA~yyraE--------------------wplliV 247 (689)
T KOG1000|consen 192 DPKLVSRLLPFQREGVIFALER----GGRILLADEMGLGKTIQALAIARYYRAE--------------------WPLLIV 247 (689)
T ss_pred CHHHHHhhCchhhhhHHHHHhc----CCeEEEecccccchHHHHHHHHHHHhhc--------------------CcEEEE
Confidence 5667788999999999999886 3466999999999999999999888754 588999
Q ss_pred echhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhh
Q 002744 265 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 344 (885)
Q Consensus 265 ~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (885)
||+++...|.+++.+|+|.... |.+..+..... ...-....|.|++|+++...-.
T Consensus 248 cPAsvrftWa~al~r~lps~~p-i~vv~~~~D~~-~~~~t~~~v~ivSye~ls~l~~----------------------- 302 (689)
T KOG1000|consen 248 CPASVRFTWAKALNRFLPSIHP-IFVVDKSSDPL-PDVCTSNTVAIVSYEQLSLLHD----------------------- 302 (689)
T ss_pred ecHHHhHHHHHHHHHhcccccc-eEEEecccCCc-cccccCCeEEEEEHHHHHHHHH-----------------------
Confidence 9999999999999999995333 44444332211 1111234588999999866421
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHH
Q 002744 345 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 424 (885)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~ 424 (885)
.|..-+|.+||+||+|++|+..+++
T Consensus 303 -------------------------------------------------------~l~~~~~~vvI~DEsH~Lk~sktkr 327 (689)
T KOG1000|consen 303 -------------------------------------------------------ILKKEKYRVVIFDESHMLKDSKTKR 327 (689)
T ss_pred -------------------------------------------------------HHhcccceEEEEechhhhhccchhh
Confidence 1445569999999999999999999
Q ss_pred HHHHHhc--ccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccc---cccccccccccCCCCCCCCCCCCcchhhhhhh
Q 002744 425 AKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYF---CKDCDCKVLDYSSAECPNCPHNSVRHFCWWNR 499 (885)
Q Consensus 425 ~~~~~~l--~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (885)
++++..+ .+.+.++|||||-..++.|||.++..+++..|.++. ..+|+.+..++ |.
T Consensus 328 ~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~------------------~~- 388 (689)
T KOG1000|consen 328 TKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRF------------------CF- 388 (689)
T ss_pred hhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccce------------------ee-
Confidence 9999887 688899999999999999999999998876664431 12233222221 10
Q ss_pred hhcccccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH
Q 002744 500 YVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYV 579 (885)
Q Consensus 500 ~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~ 579 (885)
.+.+--....+..-+.+.+|+||+|.+|... ||++.-.++. .....+-..-..+....... .
T Consensus 389 -----------Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q--LPpKrr~Vv~-~~~gr~da~~~~lv~~a~~~----t 450 (689)
T KOG1000|consen 389 -----------DYKGCTNLEELAALLFKRLMIRRLKADVLKQ--LPPKRREVVY-VSGGRIDARMDDLVKAAADY----T 450 (689)
T ss_pred -----------ecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh--CCccceEEEE-EcCCccchHHHHHHHHhhhc----c
Confidence 0111111111112234678999999999887 7776433333 22222222222222221110 0
Q ss_pred hccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhcc
Q 002744 580 QAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSS 659 (885)
Q Consensus 580 ~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~ 659 (885)
..+... .+-..+++..++
T Consensus 451 ~~~~~e---~~~~~l~l~y~~----------------------------------------------------------- 468 (689)
T KOG1000|consen 451 KVNSME---RKHESLLLFYSL----------------------------------------------------------- 468 (689)
T ss_pred hhhhhh---hhhHHHHHHHHH-----------------------------------------------------------
Confidence 000000 000011111111
Q ss_pred ccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHH--HHhcCCCccEEE
Q 002744 660 ASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF--MVERDGSAKGIV 737 (885)
Q Consensus 660 ~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~--~~~~~~~~KvII 737 (885)
..-.|+.++.+.|.. ++-..++.|+||
T Consensus 469 ---------------------------------------------------tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 469 ---------------------------------------------------TGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred ---------------------------------------------------hcccccHHHHHHHHhCcccccCCCceEEE
Confidence 113567777777766 123456899999
Q ss_pred EccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcch
Q 002744 738 FSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAV 817 (885)
Q Consensus 738 Fsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~ 817 (885)
|+....++|-|+.++...++.++||||+++..+|+.+++.|+.+.++.|-++|..|+|.||+|++|+.|+|.+++|||..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 002744 818 EQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTV 864 (885)
Q Consensus 818 ~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~ 864 (885)
..||.+|+||+||+.-|.||+|+++||+||.+|..+.+|..++..+-
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~g 624 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVG 624 (689)
T ss_pred EEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999987653
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.6e-55 Score=520.49 Aligned_cols=469 Identities=19% Similarity=0.232 Sum_probs=322.1
Q ss_pred ccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec
Q 002744 187 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 266 (885)
Q Consensus 187 ~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 266 (885)
+....|+|||+..+.+++.+. ..+.|||||||||||++|++++..+...+. .+++|||||
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~---~~R~LLADEvGLGKTIeAglil~~l~~~g~-----------------~~rvLIVvP 207 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRH---APRVLLADEVGLGKTIEAGMIIHQQLLTGR-----------------AERVLILVP 207 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhcc---CCCEEEEeCCcCcHHHHHHHHHHHHHHcCC-----------------CCcEEEEcC
Confidence 345779999999988766552 347899999999999999888776654332 269999999
Q ss_pred hhhHHHHHHHHHHhcCCCCceEEEEeCCCccc----chhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhh
Q 002744 267 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRER----SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKK 342 (885)
Q Consensus 267 ~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~----~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (885)
.+|+.||..|+.+++. +.+.++.+..... ....+..++++|+||+.+...-..
T Consensus 208 ~sL~~QW~~El~~kF~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~-------------------- 264 (956)
T PRK04914 208 ETLQHQWLVEMLRRFN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQR-------------------- 264 (956)
T ss_pred HHHHHHHHHHHHHHhC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHH--------------------
Confidence 9999999999988774 4555555432111 113445678999999998763110
Q ss_pred hhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCC--
Q 002744 343 LVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDR-- 420 (885)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~-- 420 (885)
...+....|++|||||||++++.
T Consensus 265 -------------------------------------------------------~~~l~~~~wdlvIvDEAH~lk~~~~ 289 (956)
T PRK04914 265 -------------------------------------------------------LEQALAAEWDLLVVDEAHHLVWSEE 289 (956)
T ss_pred -------------------------------------------------------HHHHhhcCCCEEEEechhhhccCCC
Confidence 01134557999999999999964
Q ss_pred -CcHHHHHHHhc--ccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccC----CCCCCCCCCCCcch
Q 002744 421 -RSNTAKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYS----SAECPNCPHNSVRH 493 (885)
Q Consensus 421 -~s~~~~~~~~l--~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 493 (885)
.|..++.+..+ +++++++|||||++|++.|+|++|+||+|..|.++..+.......... ....... ......
T Consensus 290 ~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~-~~~~~~ 368 (956)
T PRK04914 290 APSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGE-KLSDDA 368 (956)
T ss_pred CcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCC-cCCHHH
Confidence 46678888887 678999999999999999999999999999886653221000000000 0000000 000000
Q ss_pred hhhhhhhhc--------ccccccCCCchhhHHHHHHHHHH-----hhHhhhhhccCCcccccCCCCeEEEEeecCCCHHH
Q 002744 494 FCWWNRYVA--------TPIQTHGNSYGGRRAMILLKHKV-----LRSVILRRTKKGRAADLALPPRIVSLRRDSLDIRE 560 (885)
Q Consensus 494 ~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~l~~l-----l~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q 560 (885)
.......+. ..+..... ............+ ...+|+|+++.++.. +|.+....+.+++.+..
T Consensus 369 ~~~l~~ll~~~~~~~l~~~~~~~~~--~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~---fp~R~~~~~~l~~~~~y 443 (956)
T PRK04914 369 LNALGELLGEQDIEPLLQAANSDSE--EAQAARQELISELLDRHGTGRVLFRNTRAAVKG---FPKRELHPIPLPLPEQY 443 (956)
T ss_pred HHHHHHHhcccchhHHHhhhccccc--ccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC---CCcCceeEeecCCCHHH
Confidence 000000000 00000000 0011111111222 236788999988753 88998888888886543
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCC
Q 002744 561 ADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADD 640 (885)
Q Consensus 561 ~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (885)
...+.. ... ..+++ +.+|.... .....
T Consensus 444 ~~~~~~---~~~-----------------------~~~~~-~l~pe~~~---------------~~~~~----------- 470 (956)
T PRK04914 444 QTAIKV---SLE-----------------------ARARD-MLYPEQIY---------------QEFED----------- 470 (956)
T ss_pred HHHHHH---hHH-----------------------HHHHh-hcCHHHHH---------------HHHhh-----------
Confidence 332211 000 01111 11111000 00000
Q ss_pred CccccCCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHH
Q 002744 641 PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALR 720 (885)
Q Consensus 641 ~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~ 720 (885)
....+..++|+..|.
T Consensus 471 -----------------------------------------------------------------~~~~~~~d~Ki~~L~ 485 (956)
T PRK04914 471 -----------------------------------------------------------------NATWWNFDPRVEWLI 485 (956)
T ss_pred -----------------------------------------------------------------hhhccccCHHHHHHH
Confidence 000112378999999
Q ss_pred HHHHHHHhcCCCccEEEEccChhHHHHHHHHH-HhCCCcEEEEecCCCHHHHHHHHHhhccCC-CceEEEEecCCCcccc
Q 002744 721 EEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVAL 798 (885)
Q Consensus 721 ~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L-~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~VlL~St~agg~Gl 798 (885)
++|+.. .++|+||||++..+++.|.+.| ...|+++..++|+++..+|.++++.|++++ +++||| +|.+||+|+
T Consensus 486 ~~L~~~----~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI-sTdvgseGl 560 (956)
T PRK04914 486 DFLKSH----RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL-CSEIGSEGR 560 (956)
T ss_pred HHHHhc----CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE-echhhccCC
Confidence 988764 3689999999999999999999 577999999999999999999999999853 677776 669999999
Q ss_pred cccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCCCcccccCCCHHH
Q 002744 799 NLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEAD 878 (885)
Q Consensus 799 NL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~ 878 (885)
||+.|++||+||+||||..++||+||++|+||+++|.||.++.++|+|++|++....|..+++..++.....+.+..++-
T Consensus 561 Nlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~~~~~~l 640 (956)
T PRK04914 561 NFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYDEFGDEL 640 (956)
T ss_pred CcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777666555444
Q ss_pred HHhh
Q 002744 879 MRFL 882 (885)
Q Consensus 879 ~~~l 882 (885)
...|
T Consensus 641 ~~~l 644 (956)
T PRK04914 641 IPYL 644 (956)
T ss_pred HHHH
Confidence 4433
No 18
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=3.3e-55 Score=475.95 Aligned_cols=584 Identities=22% Similarity=0.291 Sum_probs=386.8
Q ss_pred CcccccccHHHHHHHHHHHHHhh--------hccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCC
Q 002744 185 PPDLITPLLRYQKEWLAWALKQE--------ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLL 256 (885)
Q Consensus 185 p~~~~~~L~~yQ~~~v~~l~~~~--------~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~ 256 (885)
.+.+..-++|||+-|+.||.... .+.+.|||||+.||||||+|+|+|+-..++...
T Consensus 248 apqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~---------------- 311 (1387)
T KOG1016|consen 248 APQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTK---------------- 311 (1387)
T ss_pred hhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCc----------------
Confidence 44566779999999999876543 134569999999999999999999887766543
Q ss_pred CCCcEEEEechhhHHHHHHHHHHhcCC---------CCceEEEEeCCCcccch--h----hhcCCCEEEecchhhHHhhh
Q 002744 257 GIKATLVICPVAAVTQWVSEINRFTSV---------GSTKVLIYHGSNRERSA--K----QFSEFDFVITTYSIIEADYR 321 (885)
Q Consensus 257 ~~~~~LIV~P~sll~qW~~Ei~k~~~~---------~~~~v~v~~g~~~~~~~--~----~l~~~dvvItty~~l~~~~~ 321 (885)
.+.+|+|+|-.++.+|..|+..|+|. ..+.|.+.....+.-.. + -.....|+++.|++++-...
T Consensus 312 -AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~l 390 (1387)
T KOG1016|consen 312 -AKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLIL 390 (1387)
T ss_pred -cceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHH
Confidence 37999999999999999999999984 24455555443332211 1 12456799999999876532
Q ss_pred hccCCCcccccccCcccchhhhhhh-hhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002744 322 KHVMPPKQKCQYCGKSFYQKKLVVH-LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSP 400 (885)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (885)
+. .+++.+.. ..... --.+..++. ++...+...+. .+.
T Consensus 391 k~-~~~~grpk---------kt~kr~~~~~i~~d~----eD~~qe~~~li---------------------------~~A 429 (1387)
T KOG1016|consen 391 KT-LPKKGRPK---------KTLKRISSGFIKDDS----EDQRQEAYSLI---------------------------RSA 429 (1387)
T ss_pred hc-ccccCCcc---------ccccccCCcccCCch----hhhHHHHHHHH---------------------------HHH
Confidence 21 11110000 00000 000000000 00000000010 123
Q ss_pred CccceecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCC
Q 002744 401 LHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSS 480 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~ 480 (885)
|..-+.|+||+||+|+|||.++.++.+++.+++++|++|||-|+||++-|+|.|++|++|.
T Consensus 430 L~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~------------------- 490 (1387)
T KOG1016|consen 430 LLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPK------------------- 490 (1387)
T ss_pred hcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheecccc-------------------
Confidence 6667899999999999999999999999999999999999999999999999999999853
Q ss_pred CCCCCCCCCCcchhhhhhhhhcccccccCCCchh------hHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeec
Q 002744 481 AECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGG------RRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRD 554 (885)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~ 554 (885)
+++....|-..|.+||..+...... .+.....|+.+|..|+-||+..-+.. .||.+.++++.+
T Consensus 491 ---------yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~--~LP~k~EyViLv 559 (1387)
T KOG1016|consen 491 ---------YLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKK--ILPEKKEYVILV 559 (1387)
T ss_pred ---------ccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhh--hcccccceEEEE
Confidence 4466677899999999988765432 22334456889999999999765443 499999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHhhcCccceeecccc-cccCCChhhhhhh-----h
Q 002744 555 SLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTA-SLRGETEADAEHV-----Q 628 (885)
Q Consensus 555 ~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~-~~~~~~~~~~~~~-----~ 628 (885)
.++..|+++|..+.......... .+- ...+.+.++.---++.|||..+-.-... ....+...+.+.+ .
T Consensus 560 r~s~iQR~LY~~Fm~d~~r~~~~---~~~---~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 560 RKSQIQRQLYRNFMLDAKREIAA---NND---AVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred eHHHHHHHHHHHHHHHHHHhhcc---ccc---cccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99999999999887543332111 100 0013344444445556999865221111 1111111111111 1
Q ss_pred hhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCc--chhhhhhc
Q 002744 629 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKS--SSILNRIQ 706 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~ 706 (885)
..|+-......++........ .. ......-|.-..... .-...+.....+.. ....+...
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~--~k-------~~n~t~kp~~s~~~p---------~f~ee~~e~~~y~~w~~el~~nYq 695 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASST--SK-------SANKTKKPRGSKKAP---------KFDEEDEEVEKYSDWTFELFENYQ 695 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchh--hh-------hhcccCCcccCcCCC---------CcccccccccchhhHHHHHHhhhh
Confidence 112111111111100000000 00 000000000000000 00000000000000 01122223
Q ss_pred ccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC------------------CCcEEEEecCCCH
Q 002744 707 LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------------GVNCVQLVGSMSI 768 (885)
Q Consensus 707 ~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~------------------gi~~~~i~G~~~~ 768 (885)
..-...++|+..+++++..-.. -+.|+|||||....++.|++.|.++ ...|.+++|.++.
T Consensus 696 ~gvLen~pk~V~~~~~~des~~--~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a 773 (1387)
T KOG1016|consen 696 EGVLENGPKIVISLEILDESTQ--IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSA 773 (1387)
T ss_pred cccccCCCceEEEEeeeccccc--cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCccc
Confidence 3334557888877777776533 4789999999999999999999864 3558899999999
Q ss_pred HHHHHHHHhhccCCCce-EEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHH
Q 002744 769 PARDAAINRFTEDPDCK-IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 847 (885)
Q Consensus 769 ~~R~~~i~~F~~~~~~~-VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe 847 (885)
.+|+++|++||..+++. .||+||++|..|+||-.||++|+||..|||....||+.|++|+||+|+++|||||+..++|-
T Consensus 774 ~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEk 853 (1387)
T KOG1016|consen 774 ADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEK 853 (1387)
T ss_pred chHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHH
Confidence 99999999999988887 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCcccccCCCHHHHHhhh
Q 002744 848 RILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLF 883 (885)
Q Consensus 848 ~i~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~lf 883 (885)
+||+||-.|+.+.+.++++--. ...++..|+..|.
T Consensus 854 kIydRQIsKqGmsdRvVDd~np-~an~s~Ke~enLl 888 (1387)
T KOG1016|consen 854 KIYDRQISKQGMSDRVVDDANP-DANISQKELENLL 888 (1387)
T ss_pred HHHHHHHhhccchhhhhcccCc-cccccHHHHHHHh
Confidence 9999999999999999975332 3467888888774
No 19
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=3.5e-45 Score=421.58 Aligned_cols=300 Identities=28% Similarity=0.391 Sum_probs=216.5
Q ss_pred CceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCCCCceEEEEe
Q 002744 213 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYH 292 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~ 292 (885)
.+++|||||+|||...+++....+.. .....++.-..........|+||||||++++.||..||.+|++.. ++|+.|.
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l~~~~k-~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~-lKv~~Y~ 453 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILELSDLPK-LCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSL-LKVLLYF 453 (1394)
T ss_pred ceeehhhhhccchHHHHHHHHhcccc-cchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhcccc-ceEEEEe
Confidence 34999999999999998887766321 111111111122233345689999999999999999999999863 7999999
Q ss_pred CCCcccc--hhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhc
Q 002744 293 GSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMK 370 (885)
Q Consensus 293 g~~~~~~--~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 370 (885)
|-.+... ...+..||||+|||++|+.++...- +.+++.
T Consensus 454 Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte-------------------------~~~~~R--------------- 493 (1394)
T KOG0298|consen 454 GIRKTFWLSPFELLQYDIVLTTYDILRNELYHTE-------------------------DFGSDR--------------- 493 (1394)
T ss_pred chhhhcccCchhhhccCEEEeehHHHHhHhhccc-------------------------ccCChh---------------
Confidence 9665443 3567899999999999999864310 000000
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhh
Q 002744 371 SSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGE 450 (885)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~e 450 (885)
...-.++.....++|..+.|.+|||||||.+...+|..++++..|++.++|++||||||+ +.+
T Consensus 494 ----------------~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Idd 556 (1394)
T KOG0298|consen 494 ----------------QLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDD 556 (1394)
T ss_pred ----------------hhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhh
Confidence 001112233446889999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhcccccccCCCchhhHHHHHHHHHHhhHhh
Q 002744 451 LYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVI 530 (885)
Q Consensus 451 L~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~ 530 (885)
|+.||.||...||... .+|-+.+..++... +.-.....++...+
T Consensus 557 l~~Ll~fLk~~Pf~~~----------------------------~~~iq~v~~~~~~r--------a~~~~~~dl~~q~l 600 (1394)
T KOG0298|consen 557 LFPLLEFLKLPPFCRP----------------------------QDFIQTVDKAYQLR--------AKCEPLLDLFKQLL 600 (1394)
T ss_pred hHHHHHHhcCCCCCCh----------------------------HHHHHHHHHHHHHH--------hhhhhHHHHHHhhh
Confidence 9999999998887322 34555555544332 22223467889999
Q ss_pred hhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHH----HHHHHHHHHHHHhccc---------cccchhHHHHHHHH
Q 002744 531 LRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESL----YSESQAQFNTYVQAGT---------VMNNYAHIFDLLTR 597 (885)
Q Consensus 531 lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l----~~~~~~~~~~~~~~~~---------~~~~~~~~l~~l~~ 597 (885)
.|+.+..|..++.+||..+.+....+++.+..+|+.. ..+....+........ .....+.++..+.+
T Consensus 601 ~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~r 680 (1394)
T KOG0298|consen 601 WRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLR 680 (1394)
T ss_pred hhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHH
Confidence 9999999999999999988888888887766666543 3444433333332111 11124567899999
Q ss_pred HHHhhcCccc
Q 002744 598 LRQAVDHPYL 607 (885)
Q Consensus 598 lr~~~~~p~l 607 (885)
|||+|+||..
T Consensus 681 LRq~Cchplv 690 (1394)
T KOG0298|consen 681 LRQACCHPLV 690 (1394)
T ss_pred HHHhhccccc
Confidence 9999999964
No 20
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=1.4e-44 Score=408.45 Aligned_cols=398 Identities=26% Similarity=0.395 Sum_probs=303.8
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
..|.+||.+|++|+...+..+. .+|||||||+|||++++.++..+...... .+|.||++|.++
T Consensus 294 g~L~~~qleGln~L~~~ws~~~-~~ilADEmgLgktVqsi~fl~sl~~~~~~----------------~~P~Lv~ap~sT 356 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGV-DAILADEMGLGKTVQSIVFLYSLPKEIHS----------------PGPPLVVAPLST 356 (696)
T ss_pred ccccccchhhhhhhhcccccCC-CcccchhhcCCceeeEEEEEeecccccCC----------------CCCceeeccCcc
Confidence 6799999999999998888775 88999999999999999998777655443 268899999999
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCC----EEEecchhhHHhhhhccCCCcccccccCcccchhhhhh
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFD----FVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 345 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~d----vvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (885)
+.+|.+|+..|.| .+.+..|+|+...+.......+. -+..+-.+...
T Consensus 357 ~~nwe~e~~~wap--~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~--------------------------- 407 (696)
T KOG0383|consen 357 IVNWEREFELWAP--SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEM--------------------------- 407 (696)
T ss_pred ccCCCCchhccCC--CcccccCCCCccchhhhhcccccccccccccCCccccc---------------------------
Confidence 9999999999998 78899999987765432211110 00000000000
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHH
Q 002744 346 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 425 (885)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~ 425 (885)
.............+++....+.+.+.++.|..+|+||+|+++|..|.++
T Consensus 408 -------------------------------~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~livde~~rlkn~~s~~f 456 (696)
T KOG0383|consen 408 -------------------------------KTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRF 456 (696)
T ss_pred -------------------------------cchhhcccccCCCchhhcccCHHHHhhhhcceeEeechhhcccchhhhh
Confidence 0000000111223334444556778999999999999999999999999
Q ss_pred HHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhcccc
Q 002744 426 KAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPI 505 (885)
Q Consensus 426 ~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 505 (885)
+.+......++++|||||.+|++.+|+++|+||.+..+. ...+|.+.|..-.
T Consensus 457 ~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~----------------------------~~~~f~e~~~d~~ 508 (696)
T KOG0383|consen 457 RVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFN----------------------------SLEWFLEEFHDIS 508 (696)
T ss_pred hhccccccchhhhccCCcchhhhHHhhhcccccCccccc----------------------------chhhhhhhcchhh
Confidence 999999999999999999999999999999999876653 2233333332211
Q ss_pred cccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 002744 506 QTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVM 585 (885)
Q Consensus 506 ~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~ 585 (885)
....+..++.++.+.|+||.+.|+... +|++.+.++++.+++.|+++|+.++.+....+.. .
T Consensus 509 ---------~~~~~~~l~~l~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~ 570 (696)
T KOG0383|consen 509 ---------CEEQIKKLHLLLCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------G 570 (696)
T ss_pred ---------HHHHHHhhccccCchhhhhhhhhhccC--CCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------c
Confidence 224455668899999999999999876 8999999999999999999999999887776554 1
Q ss_pred cchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCC
Q 002744 586 NNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVA 665 (885)
Q Consensus 586 ~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~ 665 (885)
...-.++++++.||++|+|||+.... +...........
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~---e~~~~~~~~~~~--------------------------------------- 608 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLE---EPLEENGEYLGS--------------------------------------- 608 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccc---cccccchHHHHH---------------------------------------
Confidence 22345789999999999999998541 100000000000
Q ss_pred CCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHH
Q 002744 666 KCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFL 745 (885)
Q Consensus 666 ~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l 745 (885)
.-...|.|+..|..+++++ ++.+|||+||+|++.++
T Consensus 609 ------------------------------------------~l~k~~~k~~~l~~~~~~l--~~~ghrvl~~~q~~~~l 644 (696)
T KOG0383|consen 609 ------------------------------------------ALIKASGKLTLLLKMLKKL--KSSGHRVLIFSQMIHML 644 (696)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHH--HhcchhhHHHHHHHHHH
Confidence 0012378999999999998 45689999999999999
Q ss_pred HHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCCCccc
Q 002744 746 DLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVA 797 (885)
Q Consensus 746 ~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~agg~G 797 (885)
|+|++++...+ .|.+|+|..+..+|+++|++||. +..-+|||+||++||+|
T Consensus 645 dlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 645 DLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999 99999999999999999999996 55678999999999987
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.1e-41 Score=367.59 Aligned_cols=289 Identities=37% Similarity=0.632 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHhh--------hccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec
Q 002744 195 YQKEWLAWALKQE--------ESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 266 (885)
Q Consensus 195 yQ~~~v~~l~~~~--------~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 266 (885)
||++|+.||+.++ ....+|||||||||+|||+++++++..+....... ..+++|||||
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~--------------~~~~~LIv~P 66 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQR--------------GEKKTLIVVP 66 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTS--------------S-S-EEEEE-
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccc--------------cccceeEeec
Confidence 8999999999998 55668999999999999999999988655433221 1246999999
Q ss_pred hhhHHHHHHHHHHhcCCCCceEEEEeCCC--cccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhh
Q 002744 267 VAAVTQWVSEINRFTSVGSTKVLIYHGSN--RERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 344 (885)
Q Consensus 267 ~sll~qW~~Ei~k~~~~~~~~v~v~~g~~--~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (885)
.+++.||..|+.+|+++..++++++.|.. ..........++++|+||+++......
T Consensus 67 ~~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~---------------------- 124 (299)
T PF00176_consen 67 SSLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKK---------------------- 124 (299)
T ss_dssp TTTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TST----------------------
T ss_pred cchhhhhhhhhccccccccccccccccccccccccccccccceeeecccccccccccc----------------------
Confidence 99999999999999976678999999987 223344567899999999999711000
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHH
Q 002744 345 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 424 (885)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~ 424 (885)
.....+...+|++||+||+|.+||..|..
T Consensus 125 ---------------------------------------------------~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 125 ---------------------------------------------------KDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp ---------------------------------------------------HTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred ---------------------------------------------------ccccccccccceeEEEecccccccccccc
Confidence 00122566789999999999999999999
Q ss_pred HHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhccc
Q 002744 425 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 504 (885)
Q Consensus 425 ~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (885)
++++..+.++++|+|||||++|++.|||++++||++.++. ....|.+.+..+
T Consensus 154 ~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~----------------------------~~~~f~~~~~~~ 205 (299)
T PF00176_consen 154 YKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFS----------------------------DRRSFKKWFYRP 205 (299)
T ss_dssp HHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCS----------------------------SHHHHHHHTHHH
T ss_pred cccccccccceEEeeccccccccccccccchheeeccccc----------------------------cchhhhhhhhhh
Confidence 9999999999999999999999999999999999987763 233466555433
Q ss_pred ccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002744 505 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 584 (885)
Q Consensus 505 i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~ 584 (885)
...........+..+++.+++||+++++.. .+|+..+.++.+++++.|+..|+.+.......+.... ...
T Consensus 206 ------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~--~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~ 275 (299)
T PF00176_consen 206 ------DKENSYENIERLRELLSEFMIRRTKKDVEK--ELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKK 275 (299)
T ss_dssp ------HHTHHHHHHHHHHHHHCCCEECHCGGGGCT--TSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----T
T ss_pred ------ccccccccccccccccchhhhhhhcccccc--cCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccc
Confidence 111233445567889999999999998843 4999999999999999999999988776555433322 223
Q ss_pred ccchhHHHHHHHHHHHhhcCccce
Q 002744 585 MNNYAHIFDLLTRLRQAVDHPYLV 608 (885)
Q Consensus 585 ~~~~~~~l~~l~~lr~~~~~p~l~ 608 (885)
......++..+.+||++|+||+|+
T Consensus 276 ~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 276 SKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhhHHHHHHHHHHHHHHhCCcccC
Confidence 445678899999999999999874
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.2e-39 Score=372.23 Aligned_cols=355 Identities=20% Similarity=0.277 Sum_probs=253.6
Q ss_pred ccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechh
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA 268 (885)
Q Consensus 189 ~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s 268 (885)
...|||||.+++.++... ...++|||.++||+|||+++++++.... +++|||||..
T Consensus 253 ~~~LRpYQ~eAl~~~~~~--gr~r~GIIvLPtGaGKTlvai~aa~~l~----------------------k~tLILvps~ 308 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVTAACTVK----------------------KSCLVLCTSA 308 (732)
T ss_pred CCCcCHHHHHHHHHHHhc--CCCCCcEEEeCCCCChHHHHHHHHHHhC----------------------CCEEEEeCcH
Confidence 367999999999987642 1225899999999999999998876542 5899999975
Q ss_pred -hHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhhh
Q 002744 269 -AVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 347 (885)
Q Consensus 269 -ll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (885)
++.||.+||.+|+......+..|.|..+... .....|+|+||+++.....+.. ..
T Consensus 309 ~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~~---~~~~~VvVtTYq~l~~~~~r~~-----------------~~---- 364 (732)
T TIGR00603 309 VSVEQWKQQFKMWSTIDDSQICRFTSDAKERF---HGEAGVVVSTYSMVAHTGKRSY-----------------ES---- 364 (732)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEecCccccc---ccCCcEEEEEHHHhhcccccch-----------------hh----
Confidence 5899999999997544567778888654432 2357899999999865321100 00
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHHHH
Q 002744 348 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKA 427 (885)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~~~ 427 (885)
......|....|++||+||||++.+. ...+.
T Consensus 365 -----------------------------------------------~~~l~~l~~~~~gLII~DEvH~lpA~--~fr~i 395 (732)
T TIGR00603 365 -----------------------------------------------EKVMEWLTNREWGLILLDEVHVVPAA--MFRRV 395 (732)
T ss_pred -----------------------------------------------hHHHHHhccccCCEEEEEccccccHH--HHHHH
Confidence 00001244568999999999999653 34446
Q ss_pred HHhcccccEEEEeCcCCCCchhhHHHHHHH-hccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhccccc
Q 002744 428 VLALESSYKWALSGTPLQNRVGELYSLVRF-LQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQ 506 (885)
Q Consensus 428 ~~~l~~~~r~lLTGTPi~N~l~eL~~ll~f-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 506 (885)
+..+.+++||+|||||+++. +.+..+.+ ++|..|... |.
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~~------------------------------~~-------- 435 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEAN------------------------------WM-------- 435 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeecC------------------------------HH--------
Confidence 66789999999999999865 33443443 343222100 11
Q ss_pred ccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 002744 507 THGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMN 586 (885)
Q Consensus 507 ~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~ 586 (885)
.++ ....+.+.....+.|+|++.....|.....+
T Consensus 436 -----------------eLi-------------~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~---------------- 469 (732)
T TIGR00603 436 -----------------ELQ-------------KKGFIANVQCAEVWCPMTPEFYREYLRENSR---------------- 469 (732)
T ss_pred -----------------HHH-------------hCCccccceEEEEEecCCHHHHHHHHHhcch----------------
Confidence 111 1112455556678889998754433211100
Q ss_pred chhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCC
Q 002744 587 NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAK 666 (885)
Q Consensus 587 ~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~ 666 (885)
... +..+.
T Consensus 470 --~k~-------~l~~~--------------------------------------------------------------- 477 (732)
T TIGR00603 470 --KRM-------LLYVM--------------------------------------------------------------- 477 (732)
T ss_pred --hhh-------HHhhh---------------------------------------------------------------
Confidence 000 00000
Q ss_pred CCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHH
Q 002744 667 CPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 746 (885)
Q Consensus 667 cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~ 746 (885)
...|+.++..+++.. +..++|+||||++...++
T Consensus 478 ---------------------------------------------np~K~~~~~~Li~~h--e~~g~kiLVF~~~~~~l~ 510 (732)
T TIGR00603 478 ---------------------------------------------NPNKFRACQFLIRFH--EQRGDKIIVFSDNVFALK 510 (732)
T ss_pred ---------------------------------------------ChHHHHHHHHHHHHH--hhcCCeEEEEeCCHHHHH
Confidence 145788888877664 235789999999999888
Q ss_pred HHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCC-CcchHHHHhhhh
Q 002744 747 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW-NPAVEQQAQDRI 825 (885)
Q Consensus 747 ~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~w-np~~~~QaigR~ 825 (885)
.+...| +. ..|+|.++..+|.+++++|++++.+++|++| ++|++|+||+.|++||++++++ ++..+.||+||+
T Consensus 511 ~~a~~L---~~--~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRi 584 (732)
T TIGR00603 511 EYAIKL---GK--PFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRI 584 (732)
T ss_pred HHHHHc---CC--ceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCCCCCHHHHHHHhccc
Confidence 888777 33 4589999999999999999977678888866 9999999999999999999986 999999999999
Q ss_pred hhcCCcc-----cEEEEEEEeCCCHHHHHHH
Q 002744 826 HRIGQYK-----PIRIVRFLIENTIEERILK 851 (885)
Q Consensus 826 ~RiGQ~k-----~V~VyrLv~~~TiEe~i~~ 851 (885)
.|.+..+ +.++|.|++++|.|+..-.
T Consensus 585 lR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 585 LRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred ccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 9998754 4899999999999988744
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.1e-33 Score=345.99 Aligned_cols=144 Identities=22% Similarity=0.324 Sum_probs=129.2
Q ss_pred cchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecC--------CCHHHHHHHHHhhccCCC
Q 002744 712 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGS--------MSIPARDAAINRFTEDPD 783 (885)
Q Consensus 712 ~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~--------~~~~~R~~~i~~F~~~~~ 783 (885)
.++|+..|.++|...+...++.|+||||++..+++.|.++|...|+++..++|. ++..+|.+++++|+++ .
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-~ 423 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-E 423 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-C
Confidence 378999999999998876778999999999999999999999999999999987 8888999999999986 6
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 002744 784 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVF 860 (885)
Q Consensus 784 ~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~ 860 (885)
++||+ +|.++++|+|++.+++||+|||+|||..++|++||++|.|+ +.||.|++++|.||.+|....+|...+
T Consensus 424 ~~vLv-aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 424 FNVLV-STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred CCEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 77766 77899999999999999999999999999999988888765 678999999999999988776554444
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-32 Score=290.71 Aligned_cols=464 Identities=17% Similarity=0.204 Sum_probs=293.2
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-h
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
...|.||..-++-++.+ +++++..+|||||++|+.+++..+.... +.+|+++|. .
T Consensus 14 ie~R~YQ~~i~a~al~~------NtLvvlPTGLGKT~IA~~V~~~~l~~~~------------------~kvlfLAPTKP 69 (542)
T COG1111 14 IEPRLYQLNIAAKALFK------NTLVVLPTGLGKTFIAAMVIANRLRWFG------------------GKVLFLAPTKP 69 (542)
T ss_pred ccHHHHHHHHHHHHhhc------CeEEEecCCccHHHHHHHHHHHHHHhcC------------------CeEEEecCCch
Confidence 35689999988887774 8999999999999999888886665432 478999996 8
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEeCCCccc-chhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhhh
Q 002744 269 AVTQWVSEINRFTSVGSTKVLIYHGSNRER-SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 347 (885)
Q Consensus 269 ll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~-~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (885)
|+.|...-+.+.+.-+...+..+.|.-+.. ....+....|++.|.+++.+++....
T Consensus 70 LV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Gr----------------------- 126 (542)
T COG1111 70 LVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGR----------------------- 126 (542)
T ss_pred HHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCc-----------------------
Confidence 999999999999876678899999977654 45567889999999999999975422
Q ss_pred hhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHH--H
Q 002744 348 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT--A 425 (885)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~--~ 425 (885)
+..-.+.+||+||||+.-++.+-. .
T Consensus 127 -----------------------------------------------------id~~dv~~lifDEAHRAvGnyAYv~Va 153 (542)
T COG1111 127 -----------------------------------------------------IDLDDVSLLIFDEAHRAVGNYAYVFVA 153 (542)
T ss_pred -----------------------------------------------------cChHHceEEEechhhhccCcchHHHHH
Confidence 334467899999999997765433 3
Q ss_pred HHHHhcccc-cEEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhccc
Q 002744 426 KAVLALESS-YKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 504 (885)
Q Consensus 426 ~~~~~l~~~-~r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (885)
+........ ..++|||||-. +.+.+-..+.=|++..
T Consensus 154 ~~y~~~~k~~~ilgLTASPGs-~~ekI~eV~~nLgIe~------------------------------------------ 190 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPGS-DLEKIQEVVENLGIEK------------------------------------------ 190 (542)
T ss_pred HHHHHhccCceEEEEecCCCC-CHHHHHHHHHhCCcce------------------------------------------
Confidence 333333333 56899999952 3333333333333221
Q ss_pred ccccCCCchhhHHHHHHHHHHhhHhhhhhcc-CCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Q 002744 505 IQTHGNSYGGRRAMILLKHKVLRSVILRRTK-KGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGT 583 (885)
Q Consensus 505 i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k-~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~ 583 (885)
+.+|.-. .||.++ +....+..+.++++++-.+.-+.+..-....+......+-
T Consensus 191 ------------------------vevrTE~d~DV~~Y--v~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 191 ------------------------VEVRTEEDPDVRPY--VKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred ------------------------EEEecCCCccHHHh--hccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1111111 122222 4455566777788776655555544444444444433332
Q ss_pred cccc----hhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhcccc------CcCCCCccccCCchhhhh
Q 002744 584 VMNN----YAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCN------DLADDPVVTNCGHAFCKA 653 (885)
Q Consensus 584 ~~~~----~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~c~~~~c~~ 653 (885)
.... ...++.+. ..+.. ..+.. . .+.-.....+..+. +..+...+..- +.+...
T Consensus 245 ~~~~~~~~~kdl~~~~-~~~~~-~a~~~-~------------~~~~~~l~~~a~~~kl~~a~elletqGi~~~-~~Yl~~ 308 (542)
T COG1111 245 IESSSPVSKKDLLELR-QIRLI-MAKNE-D------------SDKFRLLSVLAEAIKLAHALELLETQGIRPF-YQYLEK 308 (542)
T ss_pred eeccCcccHhHHHHHH-HHHHH-hccCc-c------------HHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HHHHHH
Confidence 2111 11222222 11111 10100 0 00000000000000 00000000000 000001
Q ss_pred hhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCc
Q 002744 654 CLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSA 733 (885)
Q Consensus 654 c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~ 733 (885)
|-......... ....+.. ...+.....+...........|||..+.++|++.+++.++.
T Consensus 309 l~e~~~~~~sk-----~a~~l~~----------------d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~ 367 (542)
T COG1111 309 LEEEATKGGSK-----AAKSLLA----------------DPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDS 367 (542)
T ss_pred HHHHhcccchH-----HHHHHhc----------------ChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCc
Confidence 11000000000 0000000 00000000000000222345899999999999999888899
Q ss_pred cEEEEccChhHHHHHHHHHHhCCCcEE-EEec--------CCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccC
Q 002744 734 KGIVFSQFTSFLDLINYSLHKSGVNCV-QLVG--------SMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVAS 804 (885)
Q Consensus 734 KvIIFsq~~~~l~~L~~~L~~~gi~~~-~i~G--------~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~ 804 (885)
|+|||++|+++++.|..+|...|+... ++-| +|++.++.++|++|+++ .++||+ +|++|.+|||++.+|
T Consensus 368 RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLV-aTSVgEEGLDIp~vD 445 (542)
T COG1111 368 RVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLV-ATSVGEEGLDIPEVD 445 (542)
T ss_pred eEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-CceEEE-EcccccccCCCCccc
Confidence 999999999999999999999998875 6655 48999999999999987 899888 789999999999999
Q ss_pred EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHhhhc
Q 002744 805 HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTV 864 (885)
Q Consensus 805 ~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~ 864 (885)
.||+|||.=+|...+||+||.+|. +.=.||-|+++||-||..|....+|...+...+
T Consensus 446 lVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i 502 (542)
T COG1111 446 LVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESI 502 (542)
T ss_pred EEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999884 556777799999999999999888865555444
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=3e-28 Score=275.35 Aligned_cols=370 Identities=19% Similarity=0.236 Sum_probs=263.0
Q ss_pred ccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec
Q 002744 187 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 266 (885)
Q Consensus 187 ~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 266 (885)
.....|||||.+++.-+.....+ .+.|++...+|.|||+.++.++.... .++|||||
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~-~~~gvivlpTGaGKT~va~~~~~~~~----------------------~~~Lvlv~ 88 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRT-ERRGVIVLPTGAGKTVVAAEAIAELK----------------------RSTLVLVP 88 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhccc-CCceEEEeCCCCCHHHHHHHHHHHhc----------------------CCEEEEEC
Confidence 34467999999999776776555 57899999999999999999888764 35999999
Q ss_pred h-hhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhh
Q 002744 267 V-AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 345 (885)
Q Consensus 267 ~-sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (885)
. .|+.||.+.+.+++... -.+-.+.|....... ..|++.||+++.....
T Consensus 89 ~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~~-----~~i~vat~qtl~~~~~------------------------ 138 (442)
T COG1061 89 TKELLDQWAEALKKFLLLN-DEIGIYGGGEKELEP-----AKVTVATVQTLARRQL------------------------ 138 (442)
T ss_pred cHHHHHHHHHHHHHhcCCc-cccceecCceeccCC-----CcEEEEEhHHHhhhhh------------------------
Confidence 7 68899998898887631 244555554433211 5699999999877410
Q ss_pred hhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHH
Q 002744 346 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 425 (885)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~ 425 (885)
...+...+|++||+||+|++..+...
T Consensus 139 ----------------------------------------------------l~~~~~~~~~liI~DE~Hh~~a~~~~-- 164 (442)
T COG1061 139 ----------------------------------------------------LDEFLGNEFGLIIFDEVHHLPAPSYR-- 164 (442)
T ss_pred ----------------------------------------------------hhhhcccccCEEEEEccccCCcHHHH--
Confidence 01133337999999999999876433
Q ss_pred HHHHhccccc-EEEEeCcCCCCchhhHHHHHHHhccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhccc
Q 002744 426 KAVLALESSY-KWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 504 (885)
Q Consensus 426 ~~~~~l~~~~-r~lLTGTPi~N~l~eL~~ll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (885)
..+..+.+.+ +++|||||....-..+..+..++++-.+.
T Consensus 165 ~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~---------------------------------------- 204 (442)
T COG1061 165 RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYE---------------------------------------- 204 (442)
T ss_pred HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEee----------------------------------------
Confidence 2334445555 99999999865545555555555422221
Q ss_pred ccccCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 002744 505 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 584 (885)
Q Consensus 505 i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~ 584 (885)
....+...+..+.|.....+.+.++..+...|................
T Consensus 205 ----------------------------~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~---- 252 (442)
T COG1061 205 ----------------------------VSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT---- 252 (442)
T ss_pred ----------------------------cCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh----
Confidence 000011112236677777888888888888887665544332221110
Q ss_pred ccchhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccC
Q 002744 585 MNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV 664 (885)
Q Consensus 585 ~~~~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~ 664 (885)
.......+..+
T Consensus 253 -------~~~~~~~~~~~-------------------------------------------------------------- 263 (442)
T COG1061 253 -------LRAENEARRIA-------------------------------------------------------------- 263 (442)
T ss_pred -------hhHHHHHHHHh--------------------------------------------------------------
Confidence 00000001000
Q ss_pred CCCCCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhH
Q 002744 665 AKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 744 (885)
Q Consensus 665 ~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~ 744 (885)
.....|+..+..++.... .+.+++||+.....
T Consensus 264 ---------------------------------------------~~~~~~~~~~~~~~~~~~---~~~~~lif~~~~~~ 295 (442)
T COG1061 264 ---------------------------------------------IASERKIAAVRGLLLKHA---RGDKTLIFASDVEH 295 (442)
T ss_pred ---------------------------------------------hccHHHHHHHHHHHHHhc---CCCcEEEEeccHHH
Confidence 112456677777766553 46799999999999
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhh
Q 002744 745 LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDR 824 (885)
Q Consensus 745 l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR 824 (885)
+..+...|...|+ +..++|.++..+|.+++++|+.+. +.+++ +++++.+|+|++.|+.+|+..|.-++..+.|++||
T Consensus 296 a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~~lv-~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR 372 (442)
T COG1061 296 AYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IKVLV-TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGR 372 (442)
T ss_pred HHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CCEEE-EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhh
Confidence 9999999999888 889999999999999999999874 66665 77999999999999999999999999999999999
Q ss_pred hhhc-CCccc--EEEEEEEeCCCHHHHHHHHHHH
Q 002744 825 IHRI-GQYKP--IRIVRFLIENTIEERILKLQEK 855 (885)
Q Consensus 825 ~~Ri-GQ~k~--V~VyrLv~~~TiEe~i~~~~~~ 855 (885)
+.|. ..+.. +..|-++..++.+..+......
T Consensus 373 ~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 373 GLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred hccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 9994 44444 7888888888888877665543
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=2.7e-28 Score=281.46 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
+...+.+++..+.+ .+.++|||+..+..++.|.+.|...|+++..++|+++.++|.++++.|+++ ...|+|+|++..
T Consensus 329 Rn~~I~~~~~~~~~--~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l 405 (501)
T PHA02558 329 RNKWIANLALKLAK--KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEccee
Confidence 34455555555532 357899999999999999999999999999999999999999999999865 677888788999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc-EEEEEEEeC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP-IRIVRFLIE 842 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~-V~VyrLv~~ 842 (885)
++|+|++..++||+++|+-+...+.|++||++|.+..|+ +.||.++-.
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 999999999999999999999999999999999988665 999999853
No 27
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=2e-24 Score=244.42 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=118.6
Q ss_pred cchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh---CCCcEEEEec--------CCCHHHHHHHHHhhcc
Q 002744 712 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVG--------SMSIPARDAAINRFTE 780 (885)
Q Consensus 712 ~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~---~gi~~~~i~G--------~~~~~~R~~~i~~F~~ 780 (885)
..+|+..|.+.|...++..++.++|||+.++..+..|..+|.. .|++...+.| +|+..++.+++++|++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 4899999999999999988899999999999999999999873 3555555555 4788999999999998
Q ss_pred CCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHH-HHHHHH
Q 002744 781 DPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ-EKKKLV 859 (885)
Q Consensus 781 ~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~-~~K~~~ 859 (885)
| .++||+ +|.+|.||||+..||-||.||..-||..++||+|| +| +++=.++.|.+ +.++.-+++. ..|..+
T Consensus 473 G-~~NvLV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t--~~~~~~~E~~~~~~e~l 544 (746)
T KOG0354|consen 473 G-EINVLV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT--GSEVIEFERNNLAKEKL 544 (746)
T ss_pred C-CccEEE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc--chhHHHHHHHHHhHHHH
Confidence 6 899888 77999999999999999999999999999999999 55 44445555555 5555555443 466666
Q ss_pred HhhhcC
Q 002744 860 FEGTVG 865 (885)
Q Consensus 860 ~~~~~~ 865 (885)
++..+.
T Consensus 545 m~~~i~ 550 (746)
T KOG0354|consen 545 MNQTIS 550 (746)
T ss_pred HHHHHH
Confidence 666553
No 28
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=5.5e-25 Score=231.85 Aligned_cols=352 Identities=21% Similarity=0.286 Sum_probs=241.6
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
+.+||||..++..|.-. ...|.||+...+|.|||+..+..+...+ +.+||+|-.++
T Consensus 301 t~iRpYQEksL~KMFGN--gRARSGiIVLPCGAGKtLVGvTAa~tik----------------------K~clvLcts~V 356 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKTLVGVTAACTIK----------------------KSCLVLCTSAV 356 (776)
T ss_pred cccCchHHHHHHHHhCC--CcccCceEEEecCCCCceeeeeeeeeec----------------------ccEEEEecCcc
Confidence 56899999999988654 3347899999999999999887765543 68899999876
Q ss_pred -HHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhhhh
Q 002744 270 -VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLK 348 (885)
Q Consensus 270 -l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (885)
+.||...+..|.--..-.+..|..+.+.+.. ....|+|+||+|+...-.+.
T Consensus 357 SVeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~---~~~gvvvsTYsMva~t~kRS------------------------- 408 (776)
T KOG1123|consen 357 SVEQWKQQFKQWSTIQDDQICRFTSDAKERFP---SGAGVVVTTYSMVAYTGKRS------------------------- 408 (776)
T ss_pred CHHHHHHHHHhhcccCccceEEeeccccccCC---CCCcEEEEeeehhhhccccc-------------------------
Confidence 8999999999987667788899887766543 46779999999986531110
Q ss_pred hccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHHHHH
Q 002744 349 YFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAKAV 428 (885)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~~~~ 428 (885)
.+ ..+. ...|....|+++|+||+|.+-. .-..+.+
T Consensus 409 ----------~e-----aek~----------------------------m~~l~~~EWGllllDEVHvvPA--~MFRRVl 443 (776)
T KOG1123|consen 409 ----------HE-----AEKI----------------------------MDFLRGREWGLLLLDEVHVVPA--KMFRRVL 443 (776)
T ss_pred ----------HH-----HHHH----------------------------HHHHhcCeeeeEEeehhccchH--HHHHHHH
Confidence 00 0000 1236777899999999999832 2233334
Q ss_pred HhcccccEEEEeCcCCCCchhhHHHHHHHh-ccCCCCccccccccccccccCCCCCCCCCCCCcchhhhhhhhhcccccc
Q 002744 429 LALESSYKWALSGTPLQNRVGELYSLVRFL-QITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQT 507 (885)
Q Consensus 429 ~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 507 (885)
.-+.+..+++||||-+... |=..=|+|| +|..|... |.+
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEAn------------------------------Wmd-------- 483 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEAN------------------------------WMD-------- 483 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhhcc------------------------------HHH--------
Confidence 4458889999999988542 112223343 33333111 111
Q ss_pred cCCCchhhHHHHHHHHHHhhHhhhhhccCCcccccCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 002744 508 HGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNN 587 (885)
Q Consensus 508 ~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lP~~~~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~ 587 (885)
|. ....+......-++|+|+++--..|-. .....
T Consensus 484 --------------L~----------------~kGhIA~VqCaEVWCpMt~eFy~eYL~---~~t~k------------- 517 (776)
T KOG1123|consen 484 --------------LQ----------------KKGHIAKVQCAEVWCPMTPEFYREYLR---ENTRK------------- 517 (776)
T ss_pred --------------HH----------------hCCceeEEeeeeeecCCCHHHHHHHHh---hhhhh-------------
Confidence 10 001123344567889999864333322 11100
Q ss_pred hhHHHHHHHHHHHhhcCccceeecccccccCCChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCC
Q 002744 588 YAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKC 667 (885)
Q Consensus 588 ~~~~l~~l~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~c 667 (885)
|+..
T Consensus 518 -----------r~lL----------------------------------------------------------------- 521 (776)
T KOG1123|consen 518 -----------RMLL----------------------------------------------------------------- 521 (776)
T ss_pred -----------hhee-----------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCccccccccCCCCCCCccccccCCCcchhhhhhcccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHH
Q 002744 668 PTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDL 747 (885)
Q Consensus 668 p~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~ 747 (885)
.+....|..+..-+|+.+ +..+.|+|||+...-.+..
T Consensus 522 -----------------------------------------yvMNP~KFraCqfLI~~H--E~RgDKiIVFsDnvfALk~ 558 (776)
T KOG1123|consen 522 -----------------------------------------YVMNPNKFRACQFLIKFH--ERRGDKIIVFSDNVFALKE 558 (776)
T ss_pred -----------------------------------------eecCcchhHHHHHHHHHH--HhcCCeEEEEeccHHHHHH
Confidence 001145667766666665 3357899999976654443
Q ss_pred HHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCc-chHHHHhhhhh
Q 002744 748 INYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNP-AVEQQAQDRIH 826 (885)
Q Consensus 748 L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp-~~~~QaigR~~ 826 (885)
+-.+.|.+ .|.|.+++.+|.++++.|+.++.++-+++| ++|...++|+.|+.+|-...+.-. .++.||.||+.
T Consensus 559 ---YAikl~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRIL 632 (776)
T KOG1123|consen 559 ---YAIKLGKP--FIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRIL 632 (776)
T ss_pred ---HHHHcCCc--eEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHH
Confidence 33333444 578999999999999999999999988878 999999999999999999887644 78899999999
Q ss_pred hcCCc----ccEEEEEEEeCCCHHHHH
Q 002744 827 RIGQY----KPIRIVRFLIENTIEERI 849 (885)
Q Consensus 827 RiGQ~----k~V~VyrLv~~~TiEe~i 849 (885)
|.-.. -++..|.||.++|.|...
T Consensus 633 RAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 633 RAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred HHhhcCccccceeeeeeeecchHHHHh
Confidence 96432 349999999999998654
No 29
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=1.5e-23 Score=243.76 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.|...|.++|..+.. .+.++|||++....++.|...|...|++...++|+++..+|..++++|+++ .++||| +|.+
T Consensus 361 ~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~ILV-aTdv 436 (545)
T PTZ00110 361 EKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPIMI-ATDV 436 (545)
T ss_pred hHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcEEE-Ecch
Confidence 456666667766543 467999999999999999999999999999999999999999999999986 677655 7799
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 844 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~T 844 (885)
+++|||++.+++||+||+|+++..+.|++||+.|.|.+-. +|.|++.+.
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~~ 485 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPDK 485 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcch
Confidence 9999999999999999999999999999999999998644 455666653
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.92 E-value=3.9e-23 Score=236.81 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=98.6
Q ss_pred CCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEe
Q 002744 730 DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 809 (885)
Q Consensus 730 ~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~ 809 (885)
....++|||+.....++.|...|...|++...++|.++..+|.++++.|+++ .++||| +|+++++|||++.+++||+|
T Consensus 243 ~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~iLV-aTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 243 GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DIRVLV-ATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EccHHhcCCCcccCCEEEEe
Confidence 3457999999999999999999999999999999999999999999999986 788777 77999999999999999999
Q ss_pred CCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 810 DPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 810 D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
|+|.++..|.|++||+.|.|++-.+. .|++.+
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai--~l~~~~ 352 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEAL--SLVCVD 352 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEE--EEecHH
Confidence 99999999999999999999865433 355544
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.92 E-value=3.7e-23 Score=236.51 Aligned_cols=116 Identities=22% Similarity=0.297 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
|+..|..++. .....++|||+..+..++.|...|...|+.+..++|+++..+|..++++|+++ .++||+ +|+++
T Consensus 232 k~~~l~~l~~----~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~vLV-aTd~~ 305 (434)
T PRK11192 232 KTALLCHLLK----QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVNVLV-ATDVA 305 (434)
T ss_pred HHHHHHHHHh----cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCcEEE-Ecccc
Confidence 4444444443 33457999999999999999999999999999999999999999999999976 788777 66999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
++|+|++.+++||+||+|+++..|.|++||+.|.|..-.+.+
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999999999999999999999998655444
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.92 E-value=9.5e-23 Score=234.64 Aligned_cols=121 Identities=17% Similarity=0.292 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
|+..|..++... ...++||||.....++.+...|...|+.+..++|+++..+|+.+++.|+++ ..+||| +|+++
T Consensus 229 k~~~l~~ll~~~----~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLV-aTdv~ 302 (460)
T PRK11776 229 RLPALQRLLLHH----QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLV-ATDVA 302 (460)
T ss_pred HHHHHHHHHHhc----CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEE-Eeccc
Confidence 556666666432 356899999999999999999999999999999999999999999999976 778776 67999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
++|||++.+++||+||+|.++..|.||+||+.|.|+.- ..|.|+..+
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 99999999999999999999999999999999999764 445566654
No 33
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=3.6e-23 Score=235.51 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.|+..|..++.. ....++|||+.....++.|...|...|+++..++|+++..+|.+++++|+++ .++||+ +|++
T Consensus 241 ~k~~~l~~ll~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~vLV-aTdv 314 (423)
T PRK04837 241 EKMRLLQTLIEE----EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLDILV-ATDV 314 (423)
T ss_pred HHHHHHHHHHHh----cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCcEEE-Eech
Confidence 355555555543 2357999999999999999999999999999999999999999999999987 788777 6799
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
+++|||++.+++||+||+|+++..|.|++||+.|.|+.-. .+.|++++
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~~ 362 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACEE 362 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCHH
Confidence 9999999999999999999999999999999999997643 44566553
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=5e-23 Score=236.61 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=96.6
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 810 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D 810 (885)
++.++|||+..+..++.+...|...|+.+..+||+++..+|.++++.|.++ .++||+ +|.+.|.|||++..++||+++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~vLV-aT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQVVV-ATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCCcccceEEEEeC
Confidence 356779999999999999999999999999999999999999999999976 788877 669999999999999999999
Q ss_pred CCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 811 PWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 811 ~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
+|.++..+.|++||++|.|+.....++
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999987765543
No 35
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=1.2e-22 Score=234.40 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
|...|.+++. .....|+|||++.+..++.|...|...|+.+..++|.++..+|.++++.|+++ .++||+ +|+++
T Consensus 322 k~~~l~~ll~----~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~vLv-aT~~l 395 (475)
T PRK01297 322 KYKLLYNLVT----QNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRVLV-ATDVA 395 (475)
T ss_pred HHHHHHHHHH----hcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcEEE-Ecccc
Confidence 4444444443 33457999999999999999999999999999999999999999999999987 788777 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
++|||++.+++||+|++|+++..+.|++||++|.|+.-. ++.|+..+
T Consensus 396 ~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~~ 442 (475)
T PRK01297 396 GRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGED 442 (475)
T ss_pred ccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecHH
Confidence 999999999999999999999999999999999998643 44455544
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=1.5e-22 Score=236.19 Aligned_cols=120 Identities=20% Similarity=0.317 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
|+..|..++. ...+.++|||+.....++.|.+.|...|+.+..++|.++..+|..+++.|+++ .++||| +|+++
T Consensus 244 k~~~L~~ll~----~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~VLV-aTdv~ 317 (572)
T PRK04537 244 KQTLLLGLLS----RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLEILV-ATDVA 317 (572)
T ss_pred HHHHHHHHHh----cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCeEEE-Eehhh
Confidence 4445544443 33467999999999999999999999999999999999999999999999976 788777 67999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
+.|||++.+++||+||+|+++..|.|++||+.|.|..-.+ +.|++.
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 9999999999999999999999999999999999986543 345554
No 37
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.91 E-value=2.9e-22 Score=232.37 Aligned_cols=122 Identities=16% Similarity=0.209 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
...|.++|.... ....++|||+..+..++.|...|.. .|+++..++|+++..+|..++++|.++ .++||+ +|.++
T Consensus 353 ~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~ILV-aTdvl 428 (518)
T PLN00206 353 KQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPVIV-ATGVL 428 (518)
T ss_pred HHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCEEE-EecHh
Confidence 344444444331 1235899999999999999999975 699999999999999999999999986 788776 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
+.|||++.+++||+||+|.++..|.|++||++|.|..- +++.|+..+
T Consensus 429 ~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~ 475 (518)
T PLN00206 429 GRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEE 475 (518)
T ss_pred hccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchh
Confidence 99999999999999999999999999999999999753 444566554
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.90 E-value=1.3e-21 Score=229.39 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.|..+|..+|.. ....++||||.....++.|...|...|+....++|.++..+|..++++|+++ .++||| +|++
T Consensus 231 ~k~~~L~~~L~~----~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILV-ATdv 304 (629)
T PRK11634 231 RKNEALVRFLEA----EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILI-ATDV 304 (629)
T ss_pred hHHHHHHHHHHh----cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEE-Ecch
Confidence 456666666543 2346899999999999999999999999999999999999999999999986 777666 7799
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccE
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V 834 (885)
++.|||++.+++||+||+|.++..|.|++||+.|.|..-.+
T Consensus 305 ~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 99999999999999999999999999999999999976543
No 39
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=4.5e-22 Score=243.95 Aligned_cols=107 Identities=16% Similarity=0.280 Sum_probs=86.4
Q ss_pred CCccEEEEccChhHHHHHHHHHHhC------CC---cEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccccc
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKS------GV---NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLT 801 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~------gi---~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~ 801 (885)
.+.|+||||.....++.+.+.|... ++ .+..++|+++ ++.+++++|.++..+ .++++++..++|+|.+
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccccCCCcc
Confidence 3579999999999999888877642 22 3456999985 677899999886434 4555889999999999
Q ss_pred ccCEEEEeCCCCCcchHHHHhhhhhhcCC---cccEEEEEEE
Q 002744 802 VASHVFLMDPWWNPAVEQQAQDRIHRIGQ---YKPIRIVRFL 840 (885)
Q Consensus 802 ~A~~VI~~D~~wnp~~~~QaigR~~RiGQ---~k~V~VyrLv 840 (885)
.++.||++.|+-++..+.|++||+.|..- +....|+.++
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 99999999999999999999999999754 4446666554
No 40
>PTZ00424 helicase 45; Provisional
Probab=99.89 E-value=1.3e-21 Score=222.20 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=99.2
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 810 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D 810 (885)
...++|||+..+..++.+...|...++.+..++|+++..+|..+++.|+++ .++||+ +|.+.++|+|++.+++||++|
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLv-aT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLI-TTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-EcccccCCcCcccCCEEEEEC
Confidence 346899999999999999999999999999999999999999999999976 788776 779999999999999999999
Q ss_pred CCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 811 PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 811 ~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
++.++..+.|++||++|.|.. -.++.|+..+..+
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~~~ 377 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRK--GVAINFVTPDDIE 377 (401)
T ss_pred CCCCHHHEeecccccccCCCC--ceEEEEEcHHHHH
Confidence 999999999999999999864 3455567655433
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.89 E-value=1e-21 Score=231.58 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 810 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D 810 (885)
.+.++||||..+..++.+...|...|+++..+||+++.++|.++++.|.++ .++||+ +|.+.|.|||++..++||+||
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VLV-aT~a~~~GIDip~V~~VI~~d 312 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIVV-ATVAFGMGINKPNVRFVVHFD 312 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEEE-EechhhccCCCCCcCEEEEeC
Confidence 467899999999999999999999999999999999999999999999976 778776 678999999999999999999
Q ss_pred CCCCcchHHHHhhhhhhcCCcccE
Q 002744 811 PWWNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 811 ~~wnp~~~~QaigR~~RiGQ~k~V 834 (885)
+|.++..+.|++||++|.|....+
T Consensus 313 ~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 313 IPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred CCCCHHHHHHHhhhccCCCCCceE
Confidence 999999999999999999976553
No 42
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.3e-21 Score=215.70 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=108.4
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|...|.++|..+. .+.+.|+||||....+.+.|+..|...++++..|||..++.+|..+++.|+++ +..||+ +|+
T Consensus 323 ~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~~~vLV-ATd 399 (519)
T KOG0331|consen 323 TAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-KSPVLV-ATD 399 (519)
T ss_pred HHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-CcceEE-Ecc
Confidence 568888888888886 34567999999999999999999999999999999999999999999999987 677666 779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccE
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V 834 (885)
+++.||++...++||+||+|-|...|.+|+||..|.|++-..
T Consensus 400 VAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 400 VAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred cccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 999999999999999999999999999999999998887543
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=1.4e-21 Score=231.43 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=94.6
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCC
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~ 811 (885)
+.++|||+..+...+.+...|...|+++..+||+++.++|..+++.|.++ .++|++ +|.+.|.|||++.+++||+|++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vlV-aT~a~~~GID~p~v~~VI~~~~ 301 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVMV-ATNAFGMGIDKPNVRFVIHYDM 301 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEEE-EechhhccCcCCCCCEEEEcCC
Confidence 57899999999999999999999999999999999999999999999986 677766 7799999999999999999999
Q ss_pred CCCcchHHHHhhhhhhcCCcccEE
Q 002744 812 WWNPAVEQQAQDRIHRIGQYKPIR 835 (885)
Q Consensus 812 ~wnp~~~~QaigR~~RiGQ~k~V~ 835 (885)
|.++..+.|++||++|.|+...+.
T Consensus 302 p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 302 PGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred CCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999766543
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.88 E-value=4.5e-20 Score=218.66 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred HHHHHHHHh--CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCC-CcchHHHHh
Q 002744 746 DLINYSLHK--SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW-NPAVEQQAQ 822 (885)
Q Consensus 746 ~~L~~~L~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~w-np~~~~Qai 822 (885)
..+.+.|.. .++++..+||.++..+|.+++++|.++ ..+||+ +|.+.++|+|++.++.||+++++. +.+.+.|++
T Consensus 470 ~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~ 547 (630)
T TIGR00643 470 EALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLR 547 (630)
T ss_pred HHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHh
Confidence 334444443 478899999999999999999999986 777777 779999999999999999999874 678999999
Q ss_pred hhhhhcCCcccEE
Q 002744 823 DRIHRIGQYKPIR 835 (885)
Q Consensus 823 gR~~RiGQ~k~V~ 835 (885)
||++|-|..-.+.
T Consensus 548 GRvGR~g~~g~~i 560 (630)
T TIGR00643 548 GRVGRGDHQSYCL 560 (630)
T ss_pred hhcccCCCCcEEE
Confidence 9999998754443
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.87 E-value=1.6e-20 Score=222.53 Aligned_cols=104 Identities=18% Similarity=0.134 Sum_probs=96.1
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCC
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~ 811 (885)
+...||||..+...+.|...|...|++...+||+++..+|..++++|.++ .++||+ +|.+.|.|||++..++||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~VLV-ATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINIIC-ATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcEEE-EechhhcCCCccCCcEEEEcCC
Confidence 45789999999999999999999999999999999999999999999987 788776 6799999999999999999999
Q ss_pred CCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 812 WWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 812 ~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
|.++..|.|++||++|.|+.-.+..|
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILl 783 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLY 783 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEE
Confidence 99999999999999999987665443
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=7.9e-20 Score=217.93 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=80.9
Q ss_pred CccEEEEccChh--------HHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccccc
Q 002744 732 SAKGIVFSQFTS--------FLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLT 801 (885)
Q Consensus 732 ~~KvIIFsq~~~--------~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~ 801 (885)
+++++|||...+ .+..+.+.|... ++++..+||+++..+|.+++++|.++ ..+||+ +|.+.++|+|++
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~ILV-aT~vie~GiDip 548 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDILV-ATTVIEVGVDVP 548 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEE-ECcceeeCcccC
Confidence 467788776432 234445555543 47899999999999999999999986 777776 779999999999
Q ss_pred ccCEEEEeCCCC-CcchHHHHhhhhhhcCCcccE
Q 002744 802 VASHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 802 ~A~~VI~~D~~w-np~~~~QaigR~~RiGQ~k~V 834 (885)
.++.||+++++. ..+.+.|++||++|-|..-.+
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 999999999874 568899999999998875433
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.86 E-value=1.2e-19 Score=218.79 Aligned_cols=107 Identities=8% Similarity=0.078 Sum_probs=92.6
Q ss_pred CccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEe
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 809 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~ 809 (885)
+.+++||+.....++.+...|... ++++..+||.|+..+|.+++.+|.++ .++||| +|.+.+.|+|++.+++||++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~ILV-aT~iie~GIDIp~v~~VIi~ 737 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVLV-CTTIIETGIDIPNANTIIIE 737 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-ECChhhcccccccCCEEEEe
Confidence 468999999999999999999874 78999999999999999999999987 777777 77999999999999999999
Q ss_pred CCC-CCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 810 DPW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 810 D~~-wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
+++ +..+.+.|++||++|.|+. -++|.|+..
T Consensus 738 ~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 738 RADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred cCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 985 4567889999999998864 455556544
No 48
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=193.45 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
|-.+|+.+|++. .+.-+||||..-.+.+.+.-+|...|+....++|.|++..|..+++.|+++ ...||+ +|+++
T Consensus 287 K~~yLV~ll~e~----~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv-~TDVa 360 (476)
T KOG0330|consen 287 KDTYLVYLLNEL----AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILV-CTDVA 360 (476)
T ss_pred cchhHHHHHHhh----cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEE-ecchh
Confidence 456777777754 457899999999999999999999999999999999999999999999986 666666 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
+.||+.+.+++||+||.|-+...|++|.||+.|.| +.-.+..||+.-.+|
T Consensus 361 SRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 361 SRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred cccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 99999999999999999999999999999999999 566777788884444
No 49
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.85 E-value=1.9e-19 Score=215.38 Aligned_cols=116 Identities=11% Similarity=0.053 Sum_probs=98.0
Q ss_pred CccEEEEccChhHHHHHHHHHHhC--------CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccccccc
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS--------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 803 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~--------gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A 803 (885)
+.++|||++.+..++.|...|... +.++..++|+++.++|.++.++|.++ .+++++ +|++.+.|||+...
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~vLV-aTd~lerGIDI~~v 348 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELLGVA-TTNALELGVDISGL 348 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-CceEEE-ECchHhccCCcccc
Confidence 579999999999999999887653 56677899999999999999999986 788766 88999999999999
Q ss_pred CEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHH
Q 002744 804 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 851 (885)
Q Consensus 804 ~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~ 851 (885)
++||+|+.|-+...+.|++||++|.|+.-- ++.++..+..|..+..
T Consensus 349 d~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 349 DAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARDDPLDTYLVH 394 (742)
T ss_pred cEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCCChHHHHHHh
Confidence 999999999999999999999999997643 3334454556655433
No 50
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=2.9e-19 Score=220.24 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=91.3
Q ss_pred CccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEe
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 809 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~ 809 (885)
+.+++||+.....++.+.+.|... ++++..+||.|+..+|.+++.+|.++ .++||| +|.+.+.|||++.+++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~VLV-aTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLV-CTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCEEE-ECchhhcccccccCCEEEEe
Confidence 468999999999999999999876 78899999999999999999999987 788877 77999999999999999988
Q ss_pred CCC-CCcchHHHHhhhhhhcCCcccEEEEEEE
Q 002744 810 DPW-WNPAVEQQAQDRIHRIGQYKPIRIVRFL 840 (885)
Q Consensus 810 D~~-wnp~~~~QaigR~~RiGQ~k~V~VyrLv 840 (885)
+++ +....+.|++||++|.|++- ++|-++
T Consensus 887 ~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 887 RADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred cCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 764 67788999999999998764 444344
No 51
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=3.1e-18 Score=197.37 Aligned_cols=134 Identities=24% Similarity=0.346 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.|+..|..++... ...++|||+.....++.|...|...|+++..|||++++.+|.+.+++|+++ ..+||| +|++
T Consensus 259 ~k~~~L~~ll~~~----~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~vLV-aTDv 332 (513)
T COG0513 259 EKLELLLKLLKDE----DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRVLV-ATDV 332 (513)
T ss_pred HHHHHHHHHHhcC----CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEEE-Eech
Confidence 3777777777643 234799999999999999999999999999999999999999999999976 888888 6699
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKK 856 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K 856 (885)
++.||+++..++||+||+|.++..|.+|+||..|.|.+- ..+.|++. .-|...+...++.
T Consensus 333 aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 333 AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999543 44556666 2345555444443
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.81 E-value=3.3e-18 Score=207.10 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=84.0
Q ss_pred CccEEEEccChhHHHHHHHHHHhC------------------------------------CCcEEEEecCCCHHHHHHHH
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS------------------------------------GVNCVQLVGSMSIPARDAAI 775 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~------------------------------------gi~~~~i~G~~~~~~R~~~i 775 (885)
+.++|||+..+.....++..|... ...+...||+++..+|..+.
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve 322 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVE 322 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHH
Confidence 468888888887766666555422 12467789999999999999
Q ss_pred HhhccCCCceEEEEecCCCcccccccccCEEEE----eC-----CCCCcchHHHHhhhhhhcCCcccEEEEEEE
Q 002744 776 NRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL----MD-----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFL 840 (885)
Q Consensus 776 ~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~----~D-----~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv 840 (885)
+.|+++ .++|++ +|.+.+.|+|++....||. || .+.++..+.|++||++|.|....=.++-++
T Consensus 323 ~~Fr~G-~i~VLv-aT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 323 DAFRDR-LIKVIS-STPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HHHHcC-CCeEEE-echhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 999986 788777 7799999999999877775 76 467789999999999999986543444344
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.81 E-value=3.8e-18 Score=208.47 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=91.2
Q ss_pred CccEEEEccChhHHHHHHHHHHhC------CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCE
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASH 805 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~------gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~ 805 (885)
+.++|||++.+..++.+...|... +..+..+||+++.++|..+.++|+++ .++|++ +|.+.+.|||++..++
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~vLV-aTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKVVV-SSTSLELGIDIGYIDL 361 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeEEE-ECChHHhcCCCCCCcE
Confidence 468999999999999999988762 46788899999999999999999987 777766 7799999999999999
Q ss_pred EEEeCCCCCcchHHHHhhhhhhc-CCcccEEEEE
Q 002744 806 VFLMDPWWNPAVEQQAQDRIHRI-GQYKPIRIVR 838 (885)
Q Consensus 806 VI~~D~~wnp~~~~QaigR~~Ri-GQ~k~V~Vyr 838 (885)
||++++|.+...+.|++||++|. |+...-.++-
T Consensus 362 VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 362 VVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred EEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999986 4444555543
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=3.5e-17 Score=196.88 Aligned_cols=103 Identities=19% Similarity=0.163 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
.|+|+|.+++..+.. .++.|++-++|+|||+++...+...... .+.+++|+|. +|
T Consensus 22 ~l~~~Q~~ai~~l~~-----~~nvlv~apTGSGKTl~a~lail~~l~~-------------------~~k~v~i~P~raL 77 (674)
T PRK01172 22 ELYDHQRMAIEQLRK-----GENVIVSVPTAAGKTLIAYSAIYETFLA-------------------GLKSIYIVPLRSL 77 (674)
T ss_pred CCCHHHHHHHHHHhc-----CCcEEEECCCCchHHHHHHHHHHHHHHh-------------------CCcEEEEechHHH
Confidence 489999999987533 2678999999999999986555443321 1467999996 78
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHh
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEAD 319 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~ 319 (885)
+.|+.+++.++.. ...++....|..... ...+...+++|+|++.+...
T Consensus 78 a~q~~~~~~~l~~-~g~~v~~~~G~~~~~-~~~~~~~dIiv~Tpek~~~l 125 (674)
T PRK01172 78 AMEKYEELSRLRS-LGMRVKISIGDYDDP-PDFIKRYDVVILTSEKADSL 125 (674)
T ss_pred HHHHHHHHHHHhh-cCCeEEEEeCCCCCC-hhhhccCCEEEECHHHHHHH
Confidence 8999999988643 256777777765432 23356789999999987554
No 55
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=6.6e-17 Score=187.82 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+.... ..+..|||||......+.|...|...|+++..++|.+...+|..+..+|+.+ .| +++|+
T Consensus 407 ~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~V-lIATd 480 (762)
T TIGR03714 407 PEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---AV-TVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---eE-EEEcc
Confidence 679999999998763 3467999999999999999999999999999999999877776666665543 44 55889
Q ss_pred CCccccccc---------ccCEEEEeCCCCCcchHHHHhhhhhhcCCccc
Q 002744 793 AGGVALNLT---------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 793 agg~GlNL~---------~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~ 833 (885)
.+|.|++++ ..++|+.++++-+... .|++||+.|.|..-.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~ 529 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGS 529 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCcee
Confidence 999999999 7789999999966555 999999999998654
No 56
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.77 E-value=3.5e-17 Score=174.87 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=112.0
Q ss_pred cchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 712 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 712 ~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
.+.|..+|+++|... -...+|||.+....++.|++.|++.|++++.+||+-+++||+.++..|+++ ...||+ .|
T Consensus 501 ed~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlV-aT 574 (673)
T KOG0333|consen 501 EDEKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREG-TGDILV-AT 574 (673)
T ss_pred chHHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhc-CCCEEE-Ee
Confidence 478899999998865 357899999999999999999999999999999999999999999999986 556666 67
Q ss_pred CCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 792 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 792 ~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
+++|.||+++..++||+||..-+-..|.+||||.+|.|+.-.++ .|+++..-+
T Consensus 575 DvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~dt~ 627 (673)
T KOG0333|consen 575 DVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPADTA 627 (673)
T ss_pred cccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccchhH
Confidence 99999999999999999999999999999999999999975543 356665433
No 57
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.77 E-value=5.8e-17 Score=192.48 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=80.4
Q ss_pred CccEEEEccChhHHHHHHHHHHhC-----CCcEEEEecCCCHH---------------------HHHHHHHhhccCCCce
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS-----GVNCVQLVGSMSIP---------------------ARDAAINRFTEDPDCK 785 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~-----gi~~~~i~G~~~~~---------------------~R~~~i~~F~~~~~~~ 785 (885)
+.|.+|||..+..+..+...|... +...+.++|+.+.. ....++++|.++..++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999888888887553 23445666664332 2247899998765777
Q ss_pred EEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhc-CCcc-cEEEEEEE
Q 002744 786 IFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-GQYK-PIRIVRFL 840 (885)
Q Consensus 786 VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~Ri-GQ~k-~V~VyrLv 840 (885)
+++ ..+...+|.|.+.++++++.-|.-.. ...|++||+.|+ +-.| ...|+.++
T Consensus 594 ilI-VvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~ 648 (667)
T TIGR00348 594 LLI-VVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYR 648 (667)
T ss_pred EEE-EEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECc
Confidence 776 45999999999999999999887665 578999999995 5434 36676665
No 58
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.2e-17 Score=162.18 Aligned_cols=110 Identities=15% Similarity=0.253 Sum_probs=100.4
Q ss_pred ccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCC
Q 002744 733 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW 812 (885)
Q Consensus 733 ~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~ 812 (885)
...||||......++|.+.+...++.+..+||.|++++|.+++.+|+.+ ..+||| +|++-+.|++.|..+.||+||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLi-tTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLI-TTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEE-EechhhccCCcceeEEEEecCCC
Confidence 4789999999999999999999999999999999999999999999987 778777 88999999999999999999999
Q ss_pred CCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 813 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 813 wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
-|+..|++||||.+|+|.+ -.+.+|+..+.++
T Consensus 345 ~nre~YIHRIGRSGRFGRk--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 345 NNRELYIHRIGRSGRFGRK--GVAINFVKSDDLR 376 (400)
T ss_pred ccHHHHhhhhccccccCCc--ceEEEEecHHHHH
Confidence 9999999999999999975 3456778776554
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.76 E-value=1e-16 Score=178.99 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=88.0
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCC--cEEEEecCCCHHHHHH----HHHhhccCCCceEEEEecCCCcccccccccCE
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDA----AINRFTEDPDCKIFLMSLKAGGVALNLTVASH 805 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi--~~~~i~G~~~~~~R~~----~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~ 805 (885)
+.++|||+.....++.+...|...+. .+..++|.++..+|.+ +++.|.++ ..+|++ +|++.+.|+|+. ++.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilv-aT~~~~~GiDi~-~~~ 298 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIV-ATQVIEASLDIS-ADV 298 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEE-ECcchhceeccC-CCE
Confidence 57999999999999999999988776 4889999999999976 48899875 666655 889999999995 889
Q ss_pred EEEeCCCCCcchHHHHhhhhhhcCCcc----cEEEEEEEeCC
Q 002744 806 VFLMDPWWNPAVEQQAQDRIHRIGQYK----PIRIVRFLIEN 843 (885)
Q Consensus 806 VI~~D~~wnp~~~~QaigR~~RiGQ~k----~V~VyrLv~~~ 843 (885)
||.++.+ +..+.|++||++|.|... .|+|+.....+
T Consensus 299 vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 299 MITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 9888765 789999999999999764 35555544444
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.76 E-value=9.2e-17 Score=180.03 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=76.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCC-CCcchHHHHhhhhhhcCCcccE
Q 002744 756 GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW-WNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 756 gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~-wnp~~~~QaigR~~RiGQ~k~V 834 (885)
++++..+||.|+.+++++++.+|+++ +++||+ +|.+..+|+|++.|+.+|++++. +--++..|-.||++|=+...-+
T Consensus 507 ~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 507 ELKVGLVHGRMKPAEKDAVMEAFKEG-EIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred cceeEEEecCCChHHHHHHHHHHHcC-CCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 46678899999999999999999986 788777 77999999999999999999985 6779999999999995443222
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhhhcCC
Q 002744 835 RIVRFLIENTIEERILKLQEKKKLVFEGTVGG 866 (885)
Q Consensus 835 ~VyrLv~~~TiEe~i~~~~~~K~~~~~~~~~~ 866 (885)
| |++..... +...++..++..+.+|
T Consensus 585 -~--Ll~~~~~~----~~a~~RL~im~~t~DG 609 (677)
T COG1200 585 -V--LLYKPPLS----EVAKQRLKIMRETTDG 609 (677)
T ss_pred -E--EEeCCCCC----hhHHHHHHHHHhcCCc
Confidence 1 34443331 1233455566655544
No 61
>PRK00254 ski2-like helicase; Provisional
Probab=99.75 E-value=2.8e-16 Score=189.99 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=76.2
Q ss_pred cccHHHHHHHHHH-HHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-
Q 002744 190 TPLLRYQKEWLAW-ALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 267 (885)
Q Consensus 190 ~~L~~yQ~~~v~~-l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 267 (885)
..|+|+|.+++.- +.. .++.|++-.+|+|||+.+...++...... .+.+|+|+|.
T Consensus 22 ~~l~~~Q~~ai~~~~~~-----g~nvlv~apTGsGKT~~~~l~il~~l~~~------------------~~~~l~l~P~~ 78 (720)
T PRK00254 22 EELYPPQAEALKSGVLE-----GKNLVLAIPTASGKTLVAEIVMVNKLLRE------------------GGKAVYLVPLK 78 (720)
T ss_pred CCCCHHHHHHHHHHHhC-----CCcEEEECCCCcHHHHHHHHHHHHHHHhc------------------CCeEEEEeChH
Confidence 4589999999864 332 36889999999999999844433322111 1478999996
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHh
Q 002744 268 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEAD 319 (885)
Q Consensus 268 sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~ 319 (885)
.|+.|+.+++.+|.. ...++..++|..... ...+...+|+|+|++.+...
T Consensus 79 aLa~q~~~~~~~~~~-~g~~v~~~~Gd~~~~-~~~~~~~~IiV~Tpe~~~~l 128 (720)
T PRK00254 79 ALAEEKYREFKDWEK-LGLRVAMTTGDYDST-DEWLGKYDIIIATAEKFDSL 128 (720)
T ss_pred HHHHHHHHHHHHHhh-cCCEEEEEeCCCCCc-hhhhccCCEEEEcHHHHHHH
Confidence 788999999987643 357888888875432 23456789999999987654
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.74 E-value=5.5e-16 Score=181.98 Aligned_cols=102 Identities=24% Similarity=0.343 Sum_probs=85.7
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHH-----HHHHhhcc----CC------CceEEEEecCCCcc
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-----AAINRFTE----DP------DCKIFLMSLKAGGV 796 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~-----~~i~~F~~----~~------~~~VlL~St~agg~ 796 (885)
+.++|||++....++.|...|...++ ..++|.+++.+|. +++++|.+ +. +. .+|++|++++.
T Consensus 272 g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVaer 348 (844)
T TIGR02621 272 GGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAGEV 348 (844)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchhhh
Confidence 56899999999999999999999887 8899999999999 78999976 21 13 45679999999
Q ss_pred cccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc--EEEEEE
Q 002744 797 ALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP--IRIVRF 839 (885)
Q Consensus 797 GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~--V~VyrL 839 (885)
|||+.. ++||+...+ +..+.||+||++|.|.... ++++.+
T Consensus 349 GLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999986 899987766 4799999999999998644 455544
No 63
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=9.8e-17 Score=181.78 Aligned_cols=165 Identities=18% Similarity=0.127 Sum_probs=121.0
Q ss_pred CCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEE
Q 002744 183 EDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 262 (885)
Q Consensus 183 ~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 262 (885)
..|......+|+||..++.........+-+..+|++.+|+|||.+||+++..+.+.+.. +++|
T Consensus 157 ~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~-----------------KRVL 219 (875)
T COG4096 157 YIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWV-----------------KRVL 219 (875)
T ss_pred cCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchh-----------------heee
Confidence 34444567799999999999988888777789999999999999999999988876654 7999
Q ss_pred EEec-hhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchh
Q 002744 263 VICP-VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQK 341 (885)
Q Consensus 263 IV~P-~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (885)
.++= ++|+.|-..++..|.|.+.....+..... ...+.|.+.||+++...+...-
T Consensus 220 FLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~----------------- 275 (875)
T COG4096 220 FLADRNALVDQAYGAFEDFLPFGTKMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKE----------------- 275 (875)
T ss_pred EEechHHHHHHHHHHHHHhCCCccceeeeecccC-------CcceeEEEeehHHHHhhhhccc-----------------
Confidence 9998 48999999999999995433333221111 1267899999999987643210
Q ss_pred hhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCC
Q 002744 342 KLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRR 421 (885)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~ 421 (885)
.....+..-.||+||+||||+- .
T Consensus 276 ------------------------------------------------------~~~~~f~~g~FDlIvIDEaHRg---i 298 (875)
T COG4096 276 ------------------------------------------------------DEYRRFGPGFFDLIVIDEAHRG---I 298 (875)
T ss_pred ------------------------------------------------------cccccCCCCceeEEEechhhhh---H
Confidence 0012233345899999999983 1
Q ss_pred cHHHHHHHhcccccEEEEeCcCCC
Q 002744 422 SNTAKAVLALESSYKWALSGTPLQ 445 (885)
Q Consensus 422 s~~~~~~~~l~~~~r~lLTGTPi~ 445 (885)
.+.++.+...-...+.+|||||-.
T Consensus 299 ~~~~~~I~dYFdA~~~gLTATP~~ 322 (875)
T COG4096 299 YSEWSSILDYFDAATQGLTATPKE 322 (875)
T ss_pred HhhhHHHHHHHHHHHHhhccCccc
Confidence 223446666666777888999965
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.9e-15 Score=177.45 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..+|++.+.... ..+.++||||......+.|...|...|+++..++|.+...++..+...++.+ .| +++|+
T Consensus 411 ~~K~~al~~~i~~~~--~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~V-lIATd 484 (790)
T PRK09200 411 DEKYKAVIEEVKERH--ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---AV-TVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---eE-EEEcc
Confidence 568999999987752 3468999999999999999999999999999999998877776666666543 44 45889
Q ss_pred CCcccccc---cccC-----EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 002744 793 AGGVALNL---TVAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 852 (885)
Q Consensus 793 agg~GlNL---~~A~-----~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~ 852 (885)
.+|.|+++ +... +||.+|+|-++..+.|++||+.|.|+.-.... |+ |.|+.++.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 99999999 5777 99999999999999999999999998754322 33 345555544
No 65
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=3.5e-16 Score=180.61 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+...- ..+..|||||......+.|...|...|+++..++|. ..+|++.+..|..+ ...|++ +|+
T Consensus 388 ~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~-~g~VtI-ATn 461 (745)
T TIGR00963 388 EEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGR-KGAVTI-ATN 461 (745)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCC-CceEEE-Eec
Confidence 468889988887763 347899999999999999999999999999999998 57999999999754 555555 779
Q ss_pred CCcccccccc-------cCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 793 AGGVALNLTV-------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 793 agg~GlNL~~-------A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
.+|.|+++.. .-+||.+++|-++..+.|++||+.|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999987 6699999999999999999999999998755433
No 66
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=1.1e-16 Score=173.79 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHHHhc-----CCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEE
Q 002744 713 STKIEALREEIRFMVER-----DGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 787 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~-----~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~Vl 787 (885)
+.|...|+++|...... ...++++||+....+++.|+.+|...++++..|+|.-+..+|.++++.|.++ .+.|+
T Consensus 313 ~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g-~~pvl 391 (482)
T KOG0335|consen 313 MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNG-KAPVL 391 (482)
T ss_pred hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcC-CcceE
Confidence 45666676766654311 1235999999999999999999999999999999999999999999999987 67776
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 788 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 788 L~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
+ .|.+++.|||.....|||+||.|-+-..|..||||.+|.|+.-..+.+
T Consensus 392 V-aT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 392 V-ATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred E-EehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 6 679999999999999999999999999999999999999998776664
No 67
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=3.3e-16 Score=166.70 Aligned_cols=119 Identities=16% Similarity=0.170 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHH----hCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH----KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
...+..+|... ...++|+|+...+....+...|+ .-.+++-.++|..+.+.|.+.+.+|+.+ +++||++|
T Consensus 417 pl~~~~lI~~~----k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcS- 490 (620)
T KOG0350|consen 417 PLAVYALITSN----KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICS- 490 (620)
T ss_pred hHhHHHHHHHh----hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEeh-
Confidence 34455555543 35799999999999888888776 3456666799999999999999999987 89999866
Q ss_pred CCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 792 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 792 ~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
++++.|+++...+.||+||||-.-..|.+|+||..|.||.- +.|.++..
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999999999999999999999999999964 44555544
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.69 E-value=2.6e-15 Score=186.03 Aligned_cols=104 Identities=12% Similarity=0.136 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhH---HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEe
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSF---LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 790 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~---l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~S 790 (885)
.|...|.+++..+ +.++|||++.... ++.|...|...|+++..++|++ + +.+++|.++ .++||+++
T Consensus 315 ~k~~~L~~ll~~l-----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~--~~l~~F~~G-~~~VLVat 383 (1176)
T PRK09401 315 DSVEKLVELVKRL-----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E--RKFEKFEEG-EVDVLVGV 383 (1176)
T ss_pred cHHHHHHHHHHhc-----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H--HHHHHHHCC-CCCEEEEe
Confidence 3566677766543 3479999998777 9999999999999999999999 2 346999987 89999986
Q ss_pred ---cCCCcccccccc-cCEEEEeCCCC------CcchHHHHhhhhhhc
Q 002744 791 ---LKAGGVALNLTV-ASHVFLMDPWW------NPAVEQQAQDRIHRI 828 (885)
Q Consensus 791 ---t~agg~GlNL~~-A~~VI~~D~~w------np~~~~QaigR~~Ri 828 (885)
|++++.|||++. ..+||||+.|- ....+..++||+..+
T Consensus 384 as~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 384 ASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred cCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999998 89999999997 566778888888643
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=5.9e-15 Score=169.77 Aligned_cols=130 Identities=17% Similarity=0.201 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..+|++++..... .+..+|||+......+.|...|...|+++..++|.+. +|++.+..|... ... ++++|+
T Consensus 456 ~~K~~aL~~~i~~~~~--~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~-~g~-VlVATd 529 (656)
T PRK12898 456 AAKWAAVAARVRELHA--QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQ-RGR-ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCC-CCc-EEEEcc
Confidence 5689999999887633 3467999999999999999999999999999999864 666666666643 234 455889
Q ss_pred CCccccccc---ccC-----EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHH
Q 002744 793 AGGVALNLT---VAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ 853 (885)
Q Consensus 793 agg~GlNL~---~A~-----~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~ 853 (885)
++|.|+++. ... +||.+|.|-++..|.|++||+.|.|..-.+ +.|+ |.|+.++.+-
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~~ 593 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQSF 593 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHhh
Confidence 999999998 443 999999999999999999999999975433 2233 3355555443
No 70
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1e-14 Score=156.44 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh----------------------CCCcEEEEecCCCHHH
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----------------------SGVNCVQLVGSMSIPA 770 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~----------------------~gi~~~~i~G~~~~~~ 770 (885)
--++.+|..+|...++.....|+|||-...++.+.=..+|.. .+.++.++||+|++++
T Consensus 406 KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qee 485 (708)
T KOG0348|consen 406 KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEE 485 (708)
T ss_pred chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHH
Confidence 345667888888877777778999999888887765555532 1456899999999999
Q ss_pred HHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 002744 771 RDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERIL 850 (885)
Q Consensus 771 R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~ 850 (885)
|..++..|..... .+|++|++++.||+|+...-||-||||..++.|..|+||.-|+|-+-.-.. |+.+...| ++-
T Consensus 486 Rts~f~~Fs~~~~--~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae-y~~ 560 (708)
T KOG0348|consen 486 RTSVFQEFSHSRR--AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE-YVN 560 (708)
T ss_pred HHHHHHhhccccc--eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH-HHH
Confidence 9999999987533 355588999999999999999999999999999999999999998766443 34554444 443
Q ss_pred H
Q 002744 851 K 851 (885)
Q Consensus 851 ~ 851 (885)
.
T Consensus 561 ~ 561 (708)
T KOG0348|consen 561 Y 561 (708)
T ss_pred H
Confidence 3
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.68 E-value=1.8e-15 Score=170.48 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=97.8
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCC
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~ 811 (885)
+.-.||||..+...+.+++.|...|++...+||+++.++|+..-++|.++ ++.|++ +|.|.|-|||=++...||+||+
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiV-AT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMV-ATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EeccccCccCCCCceEEEEecC
Confidence 34569999999999999999999999999999999999999999999987 777777 6699999999999999999999
Q ss_pred CCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002744 812 WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 844 (885)
Q Consensus 812 ~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~T 844 (885)
|-+...|.|=+|||+|-|..-.... |+....
T Consensus 308 P~s~EsYyQE~GRAGRDG~~a~ail--l~~~~D 338 (590)
T COG0514 308 PGSIESYYQETGRAGRDGLPAEAIL--LYSPED 338 (590)
T ss_pred CCCHHHHHHHHhhccCCCCcceEEE--eecccc
Confidence 9999999999999999998766544 555443
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.66 E-value=1.4e-14 Score=160.19 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=70.4
Q ss_pred cCCCccEEEEccChhHHHHHHHHHHhCC--CcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEE
Q 002744 729 RDGSAKGIVFSQFTSFLDLINYSLHKSG--VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHV 806 (885)
Q Consensus 729 ~~~~~KvIIFsq~~~~l~~L~~~L~~~g--i~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~V 806 (885)
..++.|+|||+.....++.+...|...+ +++..++|.++..+|.+.. ... +|++|++.+.|||+.. +.|
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~-~~v 339 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKR-DWL 339 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCC-ceE
Confidence 3356799999999999999999999865 5778899999988886543 334 5558899999999986 466
Q ss_pred EEeCCCCCcchHHHHhhhhh
Q 002744 807 FLMDPWWNPAVEQQAQDRIH 826 (885)
Q Consensus 807 I~~D~~wnp~~~~QaigR~~ 826 (885)
| ++ +-++..+.||+||++
T Consensus 340 i-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred E-EC-CCCHHHHhhhcccCC
Confidence 6 56 567899999999974
No 73
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.66 E-value=5.6e-15 Score=153.25 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=101.1
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
+.|+..+-..+.. .+++.|+|||+...-++|-|..-|...||....+||.-.+.+|+.+++.|..+ .++||+ +|+
T Consensus 449 ~~k~~~~~~f~~~---ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrILv-aTD 523 (629)
T KOG0336|consen 449 SEKLEIVQFFVAN---MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRILV-ATD 523 (629)
T ss_pred HHHHHHHHHHHHh---cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEEE-Eec
Confidence 4455444334433 34578999999999999999999999999999999999999999999999987 888777 779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~ 833 (885)
.++.||++++..||++||.|-|-..|.+|+||.+|.|.+-.
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99999999999999999999999999999999999997654
No 74
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.66 E-value=2.1e-14 Score=168.00 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=89.1
Q ss_pred CccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEe
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLM 809 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~ 809 (885)
+.++|||+.....++.+...|... ++.+..+||+++. +++.+++|...+..+|+| +|++++.||+++..++||.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq--~eq~l~~ff~~gk~kILV-ATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPN--IDEILEKVYSSKNPSIII-STPYLESSVTIRNATHVYDT 471 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCH--HHHHHHHHhccCceeEEe-ccChhhccccccCeeEEEEC
Confidence 458999999999999999999887 7899999999985 456778884333556555 88999999999999999999
Q ss_pred C----CC--------CCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHH
Q 002744 810 D----PW--------WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEE 847 (885)
Q Consensus 810 D----~~--------wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe 847 (885)
+ |. .+.+.+.||.||++|. ++=.+|+|+++.....
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~p 518 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLKP 518 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhHH
Confidence 7 21 2566788999999887 4678889998877643
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.66 E-value=2.4e-14 Score=170.35 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=73.2
Q ss_pred HHHHHHHHHhC--CCcEEEEecCCC--HHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCC---CCc--
Q 002744 745 LDLINYSLHKS--GVNCVQLVGSMS--IPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW---WNP-- 815 (885)
Q Consensus 745 l~~L~~~L~~~--gi~~~~i~G~~~--~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~---wnp-- 815 (885)
.+.+++.|... +.++.++|++++ ..++++++++|.++ ++.||+ .|+..+.|+|++..+.|+++|.+ ..|
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILI-GTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEE-EChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 34455555553 678899999885 46789999999986 778777 67899999999999999888765 333
Q ss_pred -------chHHHHhhhhhhcCCcccEEEEEEE
Q 002744 816 -------AVEQQAQDRIHRIGQYKPIRIVRFL 840 (885)
Q Consensus 816 -------~~~~QaigR~~RiGQ~k~V~VyrLv 840 (885)
..+.|+.||+.|.|....|.+...-
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 5789999999998877777765443
No 76
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=6.1e-16 Score=146.02 Aligned_cols=121 Identities=25% Similarity=0.326 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
+.|+..+.+++..... .+.++|||+.....++.+...|...+.++..++|+++..+|..+++.|+++ ... +|++|.
T Consensus 11 ~~k~~~i~~~i~~~~~--~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-ili~t~ 86 (131)
T cd00079 11 DEKLEALLELLKEHLK--KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIV-VLVATD 86 (131)
T ss_pred HHHHHHHHHHHHhccc--CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCc-EEEEcC
Confidence 3699999999887643 467999999999999999999999999999999999999999999999986 444 455789
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
++++|+|++.+++||+++++|++..+.|++||++|.||+..|++|
T Consensus 87 ~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999999998877764
No 77
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.65 E-value=1.5e-14 Score=155.59 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=113.9
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh--CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEe
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK--SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 790 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~S 790 (885)
.-|+..|...|+.. ...|.|||...-..+.++...+.+ .|++...++|.|++..|.++..+|... -.++|.+
T Consensus 298 ~~Ki~~L~sFI~sh----lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~ 371 (758)
T KOG0343|consen 298 EDKIDMLWSFIKSH----LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK--RAVVLFC 371 (758)
T ss_pred hhHHHHHHHHHHhc----cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh--cceEEEe
Confidence 34777777777655 356999999999999999998876 489999999999999999999999863 4456668
Q ss_pred cCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHH
Q 002744 791 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKK 857 (885)
Q Consensus 791 t~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~ 857 (885)
|++++.||+++..|.||-+|.|-+-.+|++|.||.-|++-.-+..+ +...+-||.|+..+++|.
T Consensus 372 TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll---~L~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 372 TDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLL---MLTPSEEEAMLKKLQKKK 435 (758)
T ss_pred ehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEE---EEcchhHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999999987766554 334456688888887774
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.64 E-value=5.1e-15 Score=161.54 Aligned_cols=107 Identities=18% Similarity=0.179 Sum_probs=95.4
Q ss_pred HhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEE
Q 002744 727 VERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHV 806 (885)
Q Consensus 727 ~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~V 806 (885)
+..-+-...||||....-++-++.+|...|+++..|.|.|++.+|..+++.+++- .++||+ ||+..+.||+-..+|.|
T Consensus 267 f~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILV-sTDLtaRGIDa~~vNLV 344 (980)
T KOG4284|consen 267 FKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILV-STDLTARGIDADNVNLV 344 (980)
T ss_pred HhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEE-ecchhhccCCccccceE
Confidence 3333456789999999999999999999999999999999999999999999875 677666 88999999999999999
Q ss_pred EEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 807 FLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 807 I~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
|++|+|-+..+|..|||||+|+|.. ...|
T Consensus 345 VNiD~p~d~eTY~HRIGRAgRFG~~-G~aV 373 (980)
T KOG4284|consen 345 VNIDAPADEETYFHRIGRAGRFGAH-GAAV 373 (980)
T ss_pred EecCCCcchHHHHHHhhhccccccc-ceeE
Confidence 9999999999999999999999975 3444
No 79
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.63 E-value=4.9e-14 Score=164.78 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=95.4
Q ss_pred ccEEEEccChhHHHHHHHHHHhCC-CcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCC
Q 002744 733 AKGIVFSQFTSFLDLINYSLHKSG-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 733 ~KvIIFsq~~~~l~~L~~~L~~~g-i~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~ 811 (885)
..+|||++.+.+++.+...|.+.+ ..+..-||+.+.++|..+-++|.++ +.++++ +|.....||+.-..+.||.+.+
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G-~lravV-~TSSLELGIDiG~vdlVIq~~S 331 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG-ELKAVV-ATSSLELGIDIGDIDLVIQLGS 331 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-CceEEE-EccchhhccccCCceEEEEeCC
Confidence 488999999999999999999887 7888889999999999999999988 699888 6699999999999999999999
Q ss_pred CCCcchHHHHhhhhhh-cCCcccEEEEEEEeCCCHHHHH
Q 002744 812 WWNPAVEQQAQDRIHR-IGQYKPIRIVRFLIENTIEERI 849 (885)
Q Consensus 812 ~wnp~~~~QaigR~~R-iGQ~k~V~VyrLv~~~TiEe~i 849 (885)
|-.-+...||+||+++ +|. +.-..+++.+ .++.+
T Consensus 332 P~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dll 366 (814)
T COG1201 332 PKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLL 366 (814)
T ss_pred cHHHHHHhHhccccccccCC---cccEEEEecC-HHHHH
Confidence 9999999999999965 444 3444456666 44443
No 80
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.63 E-value=2.9e-14 Score=177.18 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=83.6
Q ss_pred CccEEEEccChhHHHHHHHHHHhCC---------------------------------CcEEEEecCCCHHHHHHHHHhh
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSG---------------------------------VNCVQLVGSMSIPARDAAINRF 778 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~g---------------------------------i~~~~i~G~~~~~~R~~~i~~F 778 (885)
+.++|||++.+..++.+...|.... +.....||+++.++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 4689999999999999998886531 1134578999999999999999
Q ss_pred ccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhc
Q 002744 779 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI 828 (885)
Q Consensus 779 ~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~Ri 828 (885)
+++ .++|++ +|.+.+.|||+...+.||+++.|.+.+.+.|++||++|.
T Consensus 324 K~G-~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 324 KSG-ELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HhC-CceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 987 788766 779999999999999999999999999999999999995
No 81
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=4.8e-14 Score=144.54 Aligned_cols=117 Identities=21% Similarity=0.225 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.|-..|+.+|+....+ ++..++||++.+.+..+|...|+..++....+|+-|++++|..++.+|+.+ ..+++| .|++
T Consensus 237 vkdaYLv~~Lr~~~~~-~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~ili-aTDV 313 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENK-ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILI-ATDV 313 (442)
T ss_pred hhHHHHHHHHhhhhhc-cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEE-Eech
Confidence 3455677777766443 567899999999999999999999999999999999999999999999987 788777 6699
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~ 833 (885)
++.||+++..+.||++|.|-.|..|++|.||.-|.|..-.
T Consensus 314 AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 314 ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 9999999999999999999999999999999999887654
No 82
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.62 E-value=1.6e-14 Score=154.35 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.++..+..+|++... ..|+|||+..-.+.+++...|.+..+++..|||..++..|..+..+|.+. +. .+|++|++
T Consensus 315 ~~f~ll~~~LKk~~~---~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka-es-gIL~cTDV 389 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIK---RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA-ES-GILVCTDV 389 (543)
T ss_pred chHHHHHHHHHHhcC---CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc-cc-ceEEecch
Confidence 346777777777643 37999999999999999999999999999999999999999999999974 33 35667899
Q ss_pred CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~ 833 (885)
++.|+|++..+-||-||||-+|..|++|+||..|-|-+-.
T Consensus 390 aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 390 AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999999999999999999999999999999999776543
No 83
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=1.7e-15 Score=152.14 Aligned_cols=165 Identities=25% Similarity=0.389 Sum_probs=109.2
Q ss_pred cccHHHHHHHHHHHHHhhhcc--CCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech
Q 002744 190 TPLLRYQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 267 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~--~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 267 (885)
..|+|||.+++..++...... .+.++|..+||+|||++++.++..+. .++|||||.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~----------------------~~~l~~~p~ 59 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA----------------------RKVLIVAPN 59 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH----------------------CEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc----------------------cceeEecCH
Confidence 469999999999988876655 57889999999999999998887765 278999997
Q ss_pred -hhHHHHHHHHHHhcCCCCceEEEEeC-----------C-Cccc--chhhhcCCCEEEecchhhHHhhhhccCCCccccc
Q 002744 268 -AAVTQWVSEINRFTSVGSTKVLIYHG-----------S-NRER--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQ 332 (885)
Q Consensus 268 -sll~qW~~Ei~k~~~~~~~~v~v~~g-----------~-~~~~--~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~ 332 (885)
+|+.||.+++..+... ...+..... . .... ........++++++++.+........... ..
T Consensus 60 ~~l~~Q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~-~~-- 135 (184)
T PF04851_consen 60 ISLLEQWYDEFDDFGSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKID-ES-- 135 (184)
T ss_dssp HHHHHHHHHHHHHHSTT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhhhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccc-cc--
Confidence 8899999999777652 111111100 0 0000 01223567899999999987643210000 00
Q ss_pred ccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEe
Q 002744 333 YCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILD 412 (885)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlD 412 (885)
.. ..-.+....+++||+|
T Consensus 136 ------------------------------------~~--------------------------~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 136 ------------------------------------AR--------------------------RSYKLLKNKFDLVIID 153 (184)
T ss_dssp ----------------------------------------------------------------GCHHGGGGSESEEEEE
T ss_pred ------------------------------------hh--------------------------hhhhhccccCCEEEEe
Confidence 00 0001334468899999
Q ss_pred cccccCCCCcHHHHHHHhcccccEEEEeCcCC
Q 002744 413 EAHFIKDRRSNTAKAVLALESSYKWALSGTPL 444 (885)
Q Consensus 413 EaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi 444 (885)
|||++.+... ++.+......++++|||||.
T Consensus 154 EaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9999977542 66666688899999999995
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.61 E-value=7e-14 Score=173.62 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCCccEEEEccCh---hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEe---
Q 002744 717 EALREEIRFMVERDGSAKGIVFSQFT---SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS--- 790 (885)
Q Consensus 717 ~~L~~lL~~~~~~~~~~KvIIFsq~~---~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~S--- 790 (885)
..|.++|+.+ +.++|||++.. ..++.|...|...|+++..+||+++ ++.+++|.++ .++||+++
T Consensus 316 ~~L~~ll~~l-----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~ 385 (1171)
T TIGR01054 316 ETLLEIVKKL-----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASY 385 (1171)
T ss_pred HHHHHHHHHc-----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccc
Confidence 4455555443 35789999998 9999999999999999999999986 3689999987 89999986
Q ss_pred cCCCcccccccc-cCEEEEeCCC
Q 002744 791 LKAGGVALNLTV-ASHVFLMDPW 812 (885)
Q Consensus 791 t~agg~GlNL~~-A~~VI~~D~~ 812 (885)
|++++.|||++. .++||+||+|
T Consensus 386 tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 386 YGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred cCcccccCCCCccccEEEEECCC
Confidence 699999999998 7999999987
No 85
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.60 E-value=4.7e-14 Score=167.30 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
.|+|.|.+++.-.+.. ..+.|++-.+|+|||++|..+|......+. ++++-|||. +|
T Consensus 31 el~~~qq~av~~~~~~----~~N~li~aPTgsGKTlIA~lai~~~l~~~~------------------~k~vYivPlkAL 88 (766)
T COG1204 31 ELFNPQQEAVEKGLLS----DENVLISAPTGSGKTLIALLAILSTLLEGG------------------GKVVYIVPLKAL 88 (766)
T ss_pred HhhHHHHHHhhccccC----CCcEEEEcCCCCchHHHHHHHHHHHHHhcC------------------CcEEEEeChHHH
Confidence 7999999998665443 368899999999999999887777665431 588999996 89
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhh
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 320 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~ 320 (885)
..+-.+|+.+|-. ..++|.+++|+..... ..+.+++|||+||+.+..-.
T Consensus 89 a~Ek~~~~~~~~~-~GirV~~~TgD~~~~~-~~l~~~~ViVtT~EK~Dsl~ 137 (766)
T COG1204 89 AEEKYEEFSRLEE-LGIRVGISTGDYDLDD-ERLARYDVIVTTPEKLDSLT 137 (766)
T ss_pred HHHHHHHhhhHHh-cCCEEEEecCCcccch-hhhccCCEEEEchHHhhHhh
Confidence 9999999994432 3799999999876544 56789999999999986643
No 86
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.60 E-value=2.2e-13 Score=144.51 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEe
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMS 790 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~S 790 (885)
.-|+..|+++|... ..+|+|||-..-...++....|... .++.+.+||.++..+|..++..|.+. .-.| |++
T Consensus 240 ~eK~~~lv~~L~~~----~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~-~~~v-l~~ 313 (567)
T KOG0345|consen 240 DEKLSQLVHLLNNN----KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL-SNGV-LFC 313 (567)
T ss_pred HHHHHHHHHHHhcc----ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc-cCce-EEe
Confidence 45788888888753 4579999999888899988888764 67889999999999999999999973 3334 458
Q ss_pred cCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 791 LKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 791 t~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
|++++.||+++..+.||.||||-+|+...+|.||..|.|..-...|
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aiv 359 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIV 359 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEE
Confidence 8999999999999999999999999999999999999998766555
No 87
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.8e-14 Score=152.25 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=95.6
Q ss_pred ccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCC
Q 002744 733 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW 812 (885)
Q Consensus 733 ~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~ 812 (885)
.++|||.+....++.|.-.|-..|+++.-+||+.++.||-+.+..|.+. .+.||| +|++++.||++....+||+|+.|
T Consensus 427 ~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvLi-aTDvAsRGLDI~gV~tVINy~mP 504 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVLI-ATDVASRGLDIEGVQTVINYAMP 504 (691)
T ss_pred cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEEE-EechhhccCCccceeEEEeccCc
Confidence 5899999999999999999999999999999999999999999999976 888877 77999999999999999999999
Q ss_pred CCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 813 WNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 813 wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
-+...|.+|+||.-|.|..- .-+.|+.++
T Consensus 505 ~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~ 533 (691)
T KOG0338|consen 505 KTIEHYLHRVGRTARAGRAG--RSVTLVGES 533 (691)
T ss_pred hhHHHHHHHhhhhhhcccCc--ceEEEeccc
Confidence 99999999999999988742 222345554
No 88
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=6.2e-14 Score=149.35 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=112.4
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|+.+|.+.|...... .|||||..-...++-|...|...|+++..++|++.+.+|.+.+.+|... ...|++ .|+
T Consensus 452 ~~Kl~wl~~~L~~f~S~---gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~~~Vlv-atD 526 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSE---GKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-RKPVLV-ATD 526 (731)
T ss_pred HHHHHHHHHHhhhhccC---CcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-CCceEE-Eee
Confidence 45888888877776443 4999999999999999999999999999999999999999999999976 566666 669
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
+...||++....+||+||..-.-.++.|+|||..|-|-+ =+.|.|+++-..+
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999998999999999999999987 5678899886655
No 89
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=6.6e-14 Score=160.73 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHHHHHhC--CCcEEEEecCCCHHHH--HHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCC---Cc-----
Q 002744 748 INYSLHKS--GVNCVQLVGSMSIPAR--DAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWW---NP----- 815 (885)
Q Consensus 748 L~~~L~~~--gi~~~~i~G~~~~~~R--~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~w---np----- 815 (885)
+++.|... +.++.++|+.++..++ ++++++|.++ ++.||+ .|+..+.|+|++..+.|+++|.+- .|
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~ 351 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILI-GTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAA 351 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEE-eCcccccCCCCCcccEEEEEcCcccccCcccchH
Confidence 34444433 5788999999876555 8899999976 777776 678999999999999998776542 23
Q ss_pred ----chHHHHhhhhhhcCCcccEEEEEEEe
Q 002744 816 ----AVEQQAQDRIHRIGQYKPIRIVRFLI 841 (885)
Q Consensus 816 ----~~~~QaigR~~RiGQ~k~V~VyrLv~ 841 (885)
..+.|+.||+.|.+....|.|..+-.
T Consensus 352 E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 352 ERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred HHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 56899999999988776676654443
No 90
>COG4889 Predicted helicase [General function prediction only]
Probab=99.59 E-value=2.6e-14 Score=160.32 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=58.4
Q ss_pred cEEEEecCCCHHHHHHHHHhhcc--CCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc
Q 002744 758 NCVQLVGSMSIPARDAAINRFTE--DPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 758 ~~~~i~G~~~~~~R~~~i~~F~~--~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~ 833 (885)
.+-.++|+|+..+|.+....=+. ...++| |-+.++.++|++++.-+.||||+|--.-....||+||+-|.--.|+
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCc
Confidence 34458999999999655543322 224554 5578999999999999999999999888999999999999654433
No 91
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.57 E-value=2.4e-13 Score=163.69 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=93.6
Q ss_pred CccEEEEccChhHHHHHH----HHHHhCC----CcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccccccc
Q 002744 732 SAKGIVFSQFTSFLDLIN----YSLHKSG----VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 803 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~----~~L~~~g----i~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A 803 (885)
+-|.|+|+.++..+..+. ..+...+ .......|++...+|.++...|+.+ +..+++ +|.+...|+++-..
T Consensus 306 ~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g-~~~~~~-st~AlelgidiG~l 383 (851)
T COG1205 306 GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG-ELLGVI-ATNALELGIDIGSL 383 (851)
T ss_pred CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC-CccEEe-cchhhhhceeehhh
Confidence 579999999999999886 4444445 4567788999999999999999987 677666 88999999999999
Q ss_pred CEEEEeCCCC-CcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 002744 804 SHVFLMDPWW-NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 852 (885)
Q Consensus 804 ~~VI~~D~~w-np~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~ 852 (885)
+.||..-.|- .-....|+.||++|-||.-.+.+ ..-.+-++..+...
T Consensus 384 davi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~--v~~~~~~d~yy~~~ 431 (851)
T COG1205 384 DAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV--VLRSDPLDSYYLRH 431 (851)
T ss_pred hhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE--EeCCCccchhhhhC
Confidence 9999999887 66899999999999996443222 22266677666543
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.55 E-value=6e-13 Score=159.62 Aligned_cols=108 Identities=21% Similarity=0.230 Sum_probs=91.6
Q ss_pred CccEEEEccChhHHHHHHHHHHh---CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEE
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~ 808 (885)
..++|||......++.+...|.. .++.++.++|+++.++|.++++.|.++ ..+|+| +|++++.||+++..++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlV-ATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVL-ATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEE-ecchHhhcccccCceEEEE
Confidence 35899999999999999999986 478899999999999999999999865 566655 8899999999999999999
Q ss_pred eCCC----CCcch--------------HHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002744 809 MDPW----WNPAV--------------EQQAQDRIHRIGQYKPIRIVRFLIENT 844 (885)
Q Consensus 809 ~D~~----wnp~~--------------~~QaigR~~RiGQ~k~V~VyrLv~~~T 844 (885)
++.+ +||.. +.||.||++|. ++=..|+|+++..
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 8865 55654 68999999887 4567889998654
No 93
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.54 E-value=1.1e-13 Score=149.20 Aligned_cols=101 Identities=14% Similarity=0.192 Sum_probs=91.7
Q ss_pred ccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCC
Q 002744 733 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPW 812 (885)
Q Consensus 733 ~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~ 812 (885)
.+.||||+..+-+..|.-+|...+++-..+|..|.+++|-+.+++|.+. ...+|+.|++++.||+++...|||+|..|
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~--~~~VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS--PSGVLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC--CCeEEEeehhhhccCCCCCcceEEEeecC
Confidence 4899999999999999999999999999999999999999999999975 34466688999999999999999999999
Q ss_pred CCcchHHHHhhhhhhcCCcccEEE
Q 002744 813 WNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 813 wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
-+...|+.|-||.-|.+. ..|+|
T Consensus 542 rtseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred CccceeEecccccccccC-CCeEE
Confidence 999999999999999775 34554
No 94
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.54 E-value=3.4e-14 Score=146.50 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
-.|+..|++.|.+. ..+||||+.-..-.|-|.++|-..|+..+.|+|+-.+++|...|+.|+.+ .-.||+ .|+
T Consensus 407 EaKiVylLeCLQKT-----~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~g-kKDVLV-ATD 479 (610)
T KOG0341|consen 407 EAKIVYLLECLQKT-----SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAG-KKDVLV-ATD 479 (610)
T ss_pred hhhhhhHHHHhccC-----CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcC-CCceEE-Eec
Confidence 34666776666542 56999999999999999999999999999999999999999999999986 556666 779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHH
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILK 851 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~ 851 (885)
+++-||+++...|||+||.|-.-..|..||||.+|-|.+--.+. |+-+++-|..+++
T Consensus 480 VASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATT--fINK~~~esvLlD 536 (610)
T KOG0341|consen 480 VASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATT--FINKNQEESVLLD 536 (610)
T ss_pred chhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeee--eecccchHHHHHH
Confidence 99999999999999999999999999999999999998765333 4556655544433
No 95
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=9.3e-15 Score=124.31 Aligned_cols=78 Identities=29% Similarity=0.511 Sum_probs=72.2
Q ss_pred HHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcC
Q 002744 750 YSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIG 829 (885)
Q Consensus 750 ~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiG 829 (885)
.+|+..|+++..++|+++..+|+.+++.|+.+ ...||+ +|.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSG-EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTT-SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhcc-CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 36889999999999999999999999999987 455555 6799999999999999999999999999999999999987
No 96
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=7.8e-14 Score=140.68 Aligned_cols=121 Identities=15% Similarity=0.256 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
+.|+..|--+..++ .-...||||..+...++|+.-+...|+.+..+|..|.++.|..+...|+++ .++.+++| +
T Consensus 307 ~qKvhCLntLfskL----qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVct-D 380 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKL----QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCT-D 380 (459)
T ss_pred hhhhhhHHHHHHHh----cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeeh-h
Confidence 45666655555554 123779999999999999999999999999999999999999999999987 89988855 9
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEe
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLI 841 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~ 841 (885)
..-.|++.|+.|.||+||.|-|+.+|..||||.+|+|--- .-..|++
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 9999999999999999999999999999999999999632 2334554
No 97
>PRK14701 reverse gyrase; Provisional
Probab=99.53 E-value=1.1e-12 Score=166.44 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCCCccEEEEccChhH---HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec--
Q 002744 717 EALREEIRFMVERDGSAKGIVFSQFTSF---LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL-- 791 (885)
Q Consensus 717 ~~L~~lL~~~~~~~~~~KvIIFsq~~~~---l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St-- 791 (885)
..|.++|+.+ +..+|||++.... ++.|...|...|+++..++|+ |.+.+++|.++ +++||+++.
T Consensus 320 ~~L~~ll~~~-----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~ 388 (1638)
T PRK14701 320 EHVRELLKKL-----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATY 388 (1638)
T ss_pred HHHHHHHHhC-----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCC
Confidence 4555555543 3578999987764 589999999999999999994 88999999987 889999664
Q ss_pred -CCCcccccccc-cCEEEEeCCCC---CcchHHHHh-------------hhhhhcCCc
Q 002744 792 -KAGGVALNLTV-ASHVFLMDPWW---NPAVEQQAQ-------------DRIHRIGQY 831 (885)
Q Consensus 792 -~agg~GlNL~~-A~~VI~~D~~w---np~~~~Qai-------------gR~~RiGQ~ 831 (885)
.+++.|||++. ..+||||+.|- +...+.|.. ||+.|-|..
T Consensus 389 ~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 389 YGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 57899999997 89999999987 555555544 999998864
No 98
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.52 E-value=3.4e-12 Score=149.91 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+..+ ...+.-|||||.+....+.|...|...|+++..++|.....+|+.+.+.|+.+ . ++++|+
T Consensus 427 ~~k~~av~~~i~~~--~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIATN 500 (896)
T PRK13104 427 ADKFQAIIEDVREC--GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHH--HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEecc
Confidence 57899999999877 34578999999999999999999999999999999999999999999999987 2 555889
Q ss_pred CCccccccc--------------------------------------ccCEEEEeCCCCCcchHHHHhhhhhhcCCcccE
Q 002744 793 AGGVALNLT--------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 793 agg~GlNL~--------------------------------------~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V 834 (885)
.+|.|+++. ..=|||--+.+-|--.+.|..||++|.|..-..
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 999999966 234789899999999999999999999987654
Q ss_pred EEE
Q 002744 835 RIV 837 (885)
Q Consensus 835 ~Vy 837 (885)
.+|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 443
No 99
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=9.5e-13 Score=135.87 Aligned_cols=126 Identities=17% Similarity=0.241 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|+.+|.++- .++.- ...||||+...++.+|...|...|..+..++|.++..+|.+++++|+.+ ..+||+ +|.
T Consensus 315 ~~K~~~l~~ly-g~~ti---gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLi-tTn 388 (477)
T KOG0332|consen 315 DDKYQALVNLY-GLLTI---GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLI-TTN 388 (477)
T ss_pred hhHHHHHHHHH-hhhhh---hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEE-Eec
Confidence 45788887743 33222 3679999999999999999999999999999999999999999999986 677766 889
Q ss_pred CCcccccccccCEEEEeCCCC------CcchHHHHhhhhhhcCCcccEEEEEEE-eCCCHH
Q 002744 793 AGGVALNLTVASHVFLMDPWW------NPAVEQQAQDRIHRIGQYKPIRIVRFL-IENTIE 846 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~w------np~~~~QaigR~~RiGQ~k~V~VyrLv-~~~TiE 846 (885)
+.+.|++.+..+.||+||+|- .+.+|.+||||.+|+|.+ .+-| +|+ .+++.+
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk-G~a~-n~v~~~~s~~ 447 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK-GLAI-NLVDDKDSMN 447 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc-ceEE-EeecccCcHH
Confidence 999999999999999999873 458999999999999975 3333 355 444544
No 100
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=2e-12 Score=151.19 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=98.2
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+...- ..+..|||||.+....+.|...|...|+++..++|.....++.-+...++.+ . ++++|+
T Consensus 423 ~~K~~al~~~i~~~~--~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g---~-VtIATn 496 (796)
T PRK12906 423 DSKFNAVVKEIKERH--AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG---A-VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc---e-EEEEec
Confidence 568899999988763 3578999999999999999999999999999999998755555555555543 2 555889
Q ss_pred CCccccccc---ccC-----EEEEeCCCCCcchHHHHhhhhhhcCCcccEE
Q 002744 793 AGGVALNLT---VAS-----HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 835 (885)
Q Consensus 793 agg~GlNL~---~A~-----~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~ 835 (885)
.+|.|+++. ... |||.++.|-+...+.|++||++|.|..-...
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999985 666 9999999999999999999999999876543
No 101
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.50 E-value=1.4e-12 Score=156.83 Aligned_cols=109 Identities=18% Similarity=0.179 Sum_probs=91.0
Q ss_pred CccEEEEccChhHHHHHHHHHHh---CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEE
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHK---SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~ 808 (885)
...+|||......++.+.+.|.. .++.+..++|+++..+|.+++..|.++ ..+|+| +|++++.||++...++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlv-ATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVL-ATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEE-ecchHHhcccccCceEEEE
Confidence 46899999999999999999986 578889999999999999999999865 555555 8899999999999999999
Q ss_pred eCCC----CCc--------------chHHHHhhhhhhcCCcccEEEEEEEeCCCH
Q 002744 809 MDPW----WNP--------------AVEQQAQDRIHRIGQYKPIRIVRFLIENTI 845 (885)
Q Consensus 809 ~D~~----wnp--------------~~~~QaigR~~RiGQ~k~V~VyrLv~~~Ti 845 (885)
++.+ |+| +.+.||.||++|. .+=+.|+|+++...
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 7654 333 2578888888886 46789999987543
No 102
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.47 E-value=4.9e-13 Score=135.56 Aligned_cols=162 Identities=27% Similarity=0.321 Sum_probs=111.2
Q ss_pred ccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec-h
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 267 (885)
Q Consensus 189 ~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~ 267 (885)
...++|||.+++..+.... +.+++..++|+|||.+++.++........ .+++||++| .
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~----~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-----------------~~~~l~~~p~~ 64 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGK-----------------GKRVLVLVPTR 64 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC----CcEEEECCCCCchhHHHHHHHHHHhcccC-----------------CCcEEEEeCCH
Confidence 3568999999998876421 47899999999999987777666544321 258999999 5
Q ss_pred hhHHHHHHHHHHhcCCCC-ceEEEEeCCCcccchhhh-cC-CCEEEecchhhHHhhhhccCCCcccccccCcccchhhhh
Q 002744 268 AAVTQWVSEINRFTSVGS-TKVLIYHGSNRERSAKQF-SE-FDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 344 (885)
Q Consensus 268 sll~qW~~Ei~k~~~~~~-~~v~v~~g~~~~~~~~~l-~~-~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (885)
.+..||..++.++++... .....+.+.........+ .. ++++++|++.+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~--------------------- 123 (201)
T smart00487 65 ELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND--------------------- 123 (201)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC---------------------
Confidence 788999999999886333 344455554422222222 22 389999999987764321
Q ss_pred hhhhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCC-CCcH
Q 002744 345 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKD-RRSN 423 (885)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn-~~s~ 423 (885)
.+...+++++|+||+|.+.+ ....
T Consensus 124 -------------------------------------------------------~~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 124 -------------------------------------------------------LLELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred -------------------------------------------------------CcCHhHCCEEEEECHHHHhcCCcHH
Confidence 02334688999999999986 4444
Q ss_pred HHHHH-Hhc-ccccEEEEeCcCCCCc
Q 002744 424 TAKAV-LAL-ESSYKWALSGTPLQNR 447 (885)
Q Consensus 424 ~~~~~-~~l-~~~~r~lLTGTPi~N~ 447 (885)
....+ ..+ ....++++||||..+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~~ 174 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEEI 174 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchhH
Confidence 44433 333 4778899999997443
No 103
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=8.2e-12 Score=146.66 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=101.5
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++.+.+..+- ..+..|||||......+.|...|...|+++..++|. ..+|++.+..|..+ ...|+| +|+
T Consensus 413 ~~K~~aI~~~I~~~~--~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~-~g~VtI-ATN 486 (830)
T PRK12904 413 KEKFDAVVEDIKERH--KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR-PGAVTI-ATN 486 (830)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC-CceEEE-ecc
Confidence 568999999998763 346799999999999999999999999999999996 57999999999865 555555 779
Q ss_pred CCcccccccc--------------------------------------cCEEEEeCCCCCcchHHHHhhhhhhcCCcccE
Q 002744 793 AGGVALNLTV--------------------------------------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 793 agg~GlNL~~--------------------------------------A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V 834 (885)
.+|.|+++.- .=|||.-+.+-|--.+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999763 45789899999999999999999999997665
Q ss_pred EEE
Q 002744 835 RIV 837 (885)
Q Consensus 835 ~Vy 837 (885)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 543
No 104
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.47 E-value=8.7e-12 Score=148.20 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=83.9
Q ss_pred ccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeC
Q 002744 733 AKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD 810 (885)
Q Consensus 733 ~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D 810 (885)
.+|-.-.+....+..+...|+.. ..++...||.|+..+-++++..|.++ .++||| +|-....||+++.||++|+-+
T Consensus 804 GQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~~dVLv-~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 804 GQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-EYDVLV-CTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred CEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-CCCEEE-EeeeeecCcCCCCCceEEEec
Confidence 35544455566666777777654 34567889999999999999999987 888888 557899999999999999987
Q ss_pred CC-CCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 811 PW-WNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 811 ~~-wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
.+ +--++.-|-.||++|-. +.-+-|-|+..
T Consensus 882 AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred cccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 65 66789999999999954 45777777754
No 105
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.47 E-value=2.2e-12 Score=139.79 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=91.9
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEE---
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL--- 808 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~--- 808 (885)
..++|||+.++.-...|+.+|...|++..-+|++++..+|..+-..|.+. .+.+++ +|.|.+.|+++++ +.|||
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~VV-TTAAL~AGVDFPA-SQVIFEsL 516 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAAVV-TTAALAAGVDFPA-SQVIFESL 516 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-CcceEe-ehhhhhcCCCCch-HHHHHHHH
Confidence 34789999999999999999999999999999999999999999999976 777766 8899999999995 55554
Q ss_pred -eC-CCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 809 -MD-PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 809 -~D-~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
|- -|-+|..+.|..|||+|.+-...=.||-|+-.
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 22 36689999999999999987665666666643
No 106
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.46 E-value=6.5e-13 Score=126.53 Aligned_cols=137 Identities=22% Similarity=0.205 Sum_probs=98.8
Q ss_pred CceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechh-hHHHHHHHHHHhcCCCCceEEEE
Q 002744 213 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA-AVTQWVSEINRFTSVGSTKVLIY 291 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s-ll~qW~~Ei~k~~~~~~~~v~v~ 291 (885)
+.++..++|+|||.+++.++....... ..++++|+||.. +..||...+..+... ...+.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~-----------------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~ 63 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL-----------------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYL 63 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc-----------------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEE
Confidence 679999999999999999888776432 126899999985 567778888887753 4666666
Q ss_pred eCCCcccch--hhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhhhhhccCCcchhhhhhhHHHHhhh
Q 002744 292 HGSNRERSA--KQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKM 369 (885)
Q Consensus 292 ~g~~~~~~~--~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 369 (885)
.+....... ......+++++|++.+...+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~---------------------------------------------- 97 (144)
T cd00046 64 IGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERL---------------------------------------------- 97 (144)
T ss_pred ecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcC----------------------------------------------
Confidence 665443321 22467889999999887654221
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCCcHHH---HHHHhcccccEEEEeCcC
Q 002744 370 KSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA---KAVLALESSYKWALSGTP 443 (885)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~s~~~---~~~~~l~~~~r~lLTGTP 443 (885)
.+....|++||+||+|.+.+...... ..........++++||||
T Consensus 98 ------------------------------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 98 ------------------------------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred ------------------------------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 02234689999999999998875543 333445777889999998
No 107
>PRK09694 helicase Cas3; Provisional
Probab=99.45 E-value=7.3e-12 Score=150.37 Aligned_cols=97 Identities=13% Similarity=0.092 Sum_probs=79.0
Q ss_pred CccEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHH----HHHHHhhccCCCc--eEEEEecCCCcccccccc
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPAR----DAAINRFTEDPDC--KIFLMSLKAGGVALNLTV 802 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~g---i~~~~i~G~~~~~~R----~~~i~~F~~~~~~--~VlL~St~agg~GlNL~~ 802 (885)
+.++|||++....+..+.+.|...+ +++..+||.++..+| .++++.|..++.. ..+|++|++...|||+ .
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d 638 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-D 638 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-C
Confidence 5799999999999999999998764 678999999999988 4678899433221 2456699999999999 5
Q ss_pred cCEEEEeCCCCCcchHHHHhhhhhhcCCc
Q 002744 803 ASHVFLMDPWWNPAVEQQAQDRIHRIGQY 831 (885)
Q Consensus 803 A~~VI~~D~~wnp~~~~QaigR~~RiGQ~ 831 (885)
+|.+|....| ...+.||+||++|.|..
T Consensus 639 ~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 639 FDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred CCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 6888775554 57899999999999874
No 108
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=2.1e-12 Score=141.54 Aligned_cols=119 Identities=17% Similarity=0.101 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHH-HhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSL-HKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L-~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
-.|+.++.+++..- -..-+|||.|..+-+..|...| ...++.+..|+|..+..+|.+.+++|+.+ .+.|++ .|
T Consensus 372 ~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g-~IwvLi-cT 445 (593)
T KOG0344|consen 372 KGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG-KIWVLI-CT 445 (593)
T ss_pred hhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-CeeEEE-eh
Confidence 45788888887754 3468899999999999999999 78899999999999999999999999987 888888 66
Q ss_pred CCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCccc-EEEE
Q 002744 792 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKP-IRIV 837 (885)
Q Consensus 792 ~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~-V~Vy 837 (885)
.+.+.|+++..+|.||+||.|-.-..|..++||.+|-|+.-. +++|
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 999999999999999999999999999999999999998643 4443
No 109
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=5.7e-13 Score=114.22 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=74.1
Q ss_pred HHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhh
Q 002744 747 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 826 (885)
Q Consensus 747 ~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~ 826 (885)
.|...|...++++..++|.++..+|.++++.|+++ .. .+|++|.++++|+|++.+++||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~-~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNG-KI-KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcC-CC-eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 46778888899999999999999999999999976 44 55668899999999999999999999999999999999999
Q ss_pred hcC
Q 002744 827 RIG 829 (885)
Q Consensus 827 RiG 829 (885)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=6.1e-11 Score=139.04 Aligned_cols=118 Identities=13% Similarity=0.103 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+..+-+ .+..|||||......+.|...|...|+++..+++..+..++..+...|+.+. ++++|.
T Consensus 432 ~~K~~Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATn 505 (908)
T PRK13107 432 DEKYQAIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecC
Confidence 6799999999988744 4789999999999999999999999999999999999999999999999763 555889
Q ss_pred CCccccccc-------------------------------------ccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEE
Q 002744 793 AGGVALNLT-------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 835 (885)
Q Consensus 793 agg~GlNL~-------------------------------------~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~ 835 (885)
.+|.|+++. ..=|||.-+.+-|--.+.|..||++|.|..-.-.
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 999999966 2347999999999999999999999999865543
Q ss_pred E
Q 002744 836 I 836 (885)
Q Consensus 836 V 836 (885)
.
T Consensus 586 f 586 (908)
T PRK13107 586 F 586 (908)
T ss_pred E
Confidence 3
No 111
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.36 E-value=3e-11 Score=141.00 Aligned_cols=123 Identities=22% Similarity=0.210 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
+.|+..|.++|....+ +.++|||++.-.-++.|.+.|...|+.+..+||+.+..+|...+..|.++ .+. ||+.|+
T Consensus 597 ~eKf~kL~eLl~e~~e---~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~-LLvaTs 671 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE---DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVN-LLVATS 671 (997)
T ss_pred hHHHHHHHHHHHHHhh---cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-Cce-EEEehh
Confidence 6789999999998765 56999999999999999999999999999999999999999999999986 455 555779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
+.+.||+...-..||+||.+-....|..|.||..|-|.+- .-|.|+..
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999999999999887888999999999988776 55566666
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.35 E-value=8.5e-10 Score=130.07 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..++..|++.|..... .+.++|||+.....++.|...|...|+++..++|.++..+|.+++..|..+ .+.|++ +|.
T Consensus 425 ~~qi~~Ll~eI~~~~~--~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV-~t~ 500 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVA--RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLV-GIN 500 (655)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEE-EcC
Confidence 4577888888887644 468999999999999999999999999999999999999999999999876 677765 779
Q ss_pred CCcccccccccCEEEEeC-----CCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC--HHHHHHHH
Q 002744 793 AGGVALNLTVASHVFLMD-----PWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT--IEERILKL 852 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D-----~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~T--iEe~i~~~ 852 (885)
..++|++++.++.||++| .+-+...+.|++||+.|.. .- .++.|+...| +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NG--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CC--EEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 4567889999999999973 22 3444554443 44444443
No 113
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.32 E-value=1.5e-09 Score=111.59 Aligned_cols=120 Identities=8% Similarity=0.074 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh-CCCc-EEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCc
Q 002744 718 ALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVN-CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 795 (885)
Q Consensus 718 ~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-~gi~-~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg 795 (885)
+|...|++.. ..+.-++||.....++..+...|+. .+.. ...++... ..|.+.|.+|+++ ...+|+ +|....
T Consensus 293 kl~~~lekq~--~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G-~~~lLi-TTTILE 366 (441)
T COG4098 293 KLKRWLEKQR--KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDG-KITLLI-TTTILE 366 (441)
T ss_pred HHHHHHHHHH--hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcC-ceEEEE-Eeehhh
Confidence 3444555543 2367899999999999999999954 3332 24455544 6899999999986 666555 889999
Q ss_pred ccccccccCEEEEeCC--CCCcchHHHHhhhhhhcCC--cccEEEEEEEeCC
Q 002744 796 VALNLTVASHVFLMDP--WWNPAVEQQAQDRIHRIGQ--YKPIRIVRFLIEN 843 (885)
Q Consensus 796 ~GlNL~~A~~VI~~D~--~wnp~~~~QaigR~~RiGQ--~k~V~VyrLv~~~ 843 (885)
.|+.++..+..++=.- -++-+...|--||++|--. +-+|..+++=..-
T Consensus 367 RGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 367 RGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred cccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 9999999999887543 4889999999999999544 3346655544333
No 114
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=8e-10 Score=130.28 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=99.0
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|+.+|++.|.... ..+..|||||.+....+.|...|...|+++..+++ ...+|++.|..|... ...|+| +|+
T Consensus 581 ~eK~~Ali~~I~~~~--~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~VtI-ATN 654 (1025)
T PRK12900 581 REKYNAIVLKVEELQ--KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAVTI-ATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHh--hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeEEE-ecc
Confidence 569999999998763 34689999999999999999999999999999997 568999999999865 445555 889
Q ss_pred CCcccccccccC--------EEEEeCCCCCcchHHHHhhhhhhcCCcccE
Q 002744 793 AGGVALNLTVAS--------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPI 834 (885)
Q Consensus 793 agg~GlNL~~A~--------~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V 834 (885)
.+|.|+++.-.. +||..+.+-+...+.|++||++|.|..-..
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 999999998333 448889999999999999999999987554
No 115
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.30 E-value=9.2e-11 Score=123.79 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=92.6
Q ss_pred ccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC--------------------
Q 002744 733 AKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK-------------------- 792 (885)
Q Consensus 733 ~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~-------------------- 792 (885)
.|.|||.+..+..-.|.-+|+..||+.+.+.|.++...|..+|++||.+ -+.++|+|-.
T Consensus 269 gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346|consen 269 GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeEEEEccCccchhhhhccccccccccCC
Confidence 4899999999999999999999999999999999999999999999987 7777776540
Q ss_pred -----C---------CcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 793 -----A---------GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 793 -----a---------gg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
. .+.||+++..+.||+||.|-++..|++|+||..|-|.+-.+. .|++.
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gtal--Sfv~P 409 (569)
T KOG0346|consen 348 KNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTAL--SFVSP 409 (569)
T ss_pred CCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceE--EEecc
Confidence 1 146999999999999999999999999999999988765443 45544
No 116
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.28 E-value=2.6e-10 Score=140.50 Aligned_cols=121 Identities=14% Similarity=0.185 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCC---cEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 718 ALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV---NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 718 ~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi---~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
.+.+.|..+... ....+|||......++.+...|...++ .+..++|+++..+|.+++..+ +..+| |++|+++
T Consensus 266 ~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkI-VLATNIA 340 (1283)
T TIGR01967 266 AILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRI-VLATNVA 340 (1283)
T ss_pred HHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceE-EEeccHH
Confidence 333344443333 346899999999999999999987654 477899999999998885543 23454 5589999
Q ss_pred cccccccccCEEEEeCCC----C--------------CcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 795 GVALNLTVASHVFLMDPW----W--------------NPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~----w--------------np~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
+.||+++...+||.++.. + +.+.+.||.||++|.| +=..|+|+++...+
T Consensus 341 EtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 341 ETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred HhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 999999999999987732 2 2357899999999987 56789999876543
No 117
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.27 E-value=5.7e-11 Score=121.37 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
.|++||.+++..+.. .++.++..++|.|||+..+..+......... .....++||+|. .+
T Consensus 21 ~~~~~Q~~~~~~~~~-----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~--------------~~~~~viii~p~~~L 81 (203)
T cd00268 21 KPTPIQARAIPPLLS-----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPK--------------KDGPQALILAPTREL 81 (203)
T ss_pred CCCHHHHHHHHHHhc-----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcc--------------cCCceEEEEcCCHHH
Confidence 479999999988765 3688999999999999854444333322100 012478999997 78
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcccc-hhhh-cCCCEEEecchhhHHhh
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRERS-AKQF-SEFDFVITTYSIIEADY 320 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~-~~~l-~~~dvvItty~~l~~~~ 320 (885)
+.||...+..+......++..++|...... ...+ ...+++|+|.+.+...+
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l 134 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLL 134 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHH
Confidence 899999999987655778888888654322 2223 37889999999886654
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.26 E-value=4.5e-09 Score=124.98 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..++..|++.|..+.. .+.++|||+.....++.|...|...|+++..++|.++..+|..++..|..+ .+.|++ +|.
T Consensus 429 ~~q~~~L~~~L~~~~~--~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV-~t~ 504 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA--KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLV-GIN 504 (652)
T ss_pred cccHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEE-EeC
Confidence 4567788888887754 468999999999999999999999999999999999999999999999876 677665 779
Q ss_pred CCcccccccccCEEEEeCC-----CCCcchHHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 793 AGGVALNLTVASHVFLMDP-----WWNPAVEQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~-----~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
..+.|++++.++.||++|. +-++..+.|++||+.|- . .=.++.|+..
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999996 45888999999999994 3 2234455553
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.5e-08 Score=110.18 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 714 TKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 714 ~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
.-++-|+..++...++ ++|+||=+-...|++-|.++|...|+++..+|.....-+|.++|...+.+ .+.|++ ....
T Consensus 430 ~QvdDL~~EI~~r~~~--~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~DvLV-GINL 505 (663)
T COG0556 430 GQVDDLLSEIRKRVAK--NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLV-GINL 505 (663)
T ss_pred CcHHHHHHHHHHHHhc--CCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccEEE-eehh
Confidence 4456666666665444 69999999999999999999999999999999999999999999999987 788877 5799
Q ss_pred CcccccccccCEEEEeCCC-----CCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHH--HHHHHHhhhcCC
Q 002744 794 GGVALNLTVASHVFLMDPW-----WNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQE--KKKLVFEGTVGG 866 (885)
Q Consensus 794 gg~GlNL~~A~~VI~~D~~-----wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~--~K~~~~~~~~~~ 866 (885)
.-+||+|+.++-|.++|.+ -+-...+|-||||-|--. -.|..|-=.+.+++++.|-+... +++...+..-|-
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgI 584 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDETERRREIQMAYNEEHGI 584 (663)
T ss_pred hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999976 466889999999999432 23556555566777777765543 334444444443
Q ss_pred Ccc
Q 002744 867 SAD 869 (885)
Q Consensus 867 ~~~ 869 (885)
.+.
T Consensus 585 tP~ 587 (663)
T COG0556 585 TPQ 587 (663)
T ss_pred Cch
Confidence 333
No 120
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=9.3e-11 Score=122.64 Aligned_cols=120 Identities=17% Similarity=0.235 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
|+..|.++.+. -...+||+..+.-++.|...|..++++...++|.+...+|..++..|+.+ ..+||+ +|...
T Consensus 252 k~~~l~dl~~~------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlI-ttdl~ 323 (397)
T KOG0327|consen 252 KLDTLCDLYRR------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLI-TTDLL 323 (397)
T ss_pred cccHHHHHHHh------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEe-ecccc
Confidence 56666666552 24679999999999999999999999999999999999999999999987 778777 77999
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 844 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~T 844 (885)
+.|++++.++-||+||+|-|...|..++||+.|.|.+ -.+..++++.+
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 9999999999999999999999999999999999964 34455666654
No 121
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.23 E-value=7.3e-10 Score=136.10 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=86.8
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCc---EEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEE
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVN---CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 807 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~---~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI 807 (885)
+..++|||+.....++.+.+.|...+++ +..++|+++..+|.++++.+ +..+|+ ++|++++.||+++..++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rkII-VATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRRIV-LATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCeeEE-EeccHHhhccccCcceEEE
Confidence 3568999999999999999999988765 56789999999998887653 345555 5889999999999999999
Q ss_pred EeC---------------CCCCc---chHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 808 LMD---------------PWWNP---AVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 808 ~~D---------------~~wnp---~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
.++ ++-.| +.+.||.||++|. .+=..|+|+++...+
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 974 33333 5688888888887 356788999876543
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=4.8e-09 Score=120.49 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=94.4
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+..+-+ .+.-|||.+.+....+.|...|...|+++..+..... .+-.++|.+= + ....+-++|.
T Consensus 410 ~~k~~Aii~ei~~~~~--~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G-~~gaVTIATN 483 (764)
T PRK12326 410 AEKNDAIVEHIAEVHE--TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--G-KYGAVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--C-CCCcEEEEec
Confidence 5689999999988743 5789999999999999999999999999999988754 3334455542 3 3334555889
Q ss_pred CCcccccccc---------------cCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 793 AGGVALNLTV---------------ASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 793 agg~GlNL~~---------------A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
.+|.|.++.- .=|||.-+.+-|--.+.|..||+.|.|..-...+|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999988662 34899999999999999999999999987654443
No 123
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.22 E-value=1.3e-10 Score=139.23 Aligned_cols=107 Identities=13% Similarity=0.119 Sum_probs=98.0
Q ss_pred cCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEE
Q 002744 729 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 729 ~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~ 808 (885)
..++.-.||||..+.+.+.+...|...|+....+|.+++..+|+.+..+|..+ .++|++ .|=|.|-|||-.+..-||+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~~Viv-ATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KIRVIV-ATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CCeEEE-EEeeccCCCCCCceeEEEE
Confidence 33566789999999999999999999999999999999999999999999987 788777 5689999999999999999
Q ss_pred eCCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 809 MDPWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 809 ~D~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
|..|-+-.-|-|..|||+|-|+..-++.|
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEe
Confidence 99999999999999999999998775554
No 124
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.22 E-value=9.6e-11 Score=115.84 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHH
Q 002744 194 RYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQ 272 (885)
Q Consensus 194 ~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~q 272 (885)
|+|.+++.-+... +..++...+|.|||..++..+........ ...+||++|. .++.|
T Consensus 2 ~~Q~~~~~~i~~~-----~~~li~aptGsGKT~~~~~~~l~~~~~~~-----------------~~~~lii~P~~~l~~q 59 (169)
T PF00270_consen 2 PLQQEAIEAIISG-----KNVLISAPTGSGKTLAYILPALNRLQEGK-----------------DARVLIIVPTRALAEQ 59 (169)
T ss_dssp HHHHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHHHHHHTTS-----------------SSEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHcC-----CCEEEECCCCCccHHHHHHHHHhhhccCC-----------------CceEEEEeeccccccc
Confidence 7999998876632 56799999999999998766554433221 1488999996 78999
Q ss_pred HHHHHHHhcCCCCceEEEEeCCCccc--chhhh-cCCCEEEecchhhHHhhh
Q 002744 273 WVSEINRFTSVGSTKVLIYHGSNRER--SAKQF-SEFDFVITTYSIIEADYR 321 (885)
Q Consensus 273 W~~Ei~k~~~~~~~~v~v~~g~~~~~--~~~~l-~~~dvvItty~~l~~~~~ 321 (885)
-.+++.+++.....++..++|..... ....+ ...+++|+|++.+...+.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~ 111 (169)
T PF00270_consen 60 QFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLIS 111 (169)
T ss_dssp HHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCcchhhcccc
Confidence 99999999875567888888765422 12223 469999999999887653
No 125
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.19 E-value=5e-09 Score=121.74 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHHHHHHHhcCCCCceEE
Q 002744 211 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFTSVGSTKVL 289 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~Ei~k~~~~~~~~v~ 289 (885)
..+.|++..+|+|||..|...|+.........+ ......-.++-|+|. +|...-.+-+.+-+.+-.+.|.
T Consensus 126 neNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~---------~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ 196 (1230)
T KOG0952|consen 126 NENMLICAPTGSGKTVLAELCILRTIKEHEEQG---------DIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVR 196 (1230)
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHhhcccc---------ccccCCceEEEEechHHHHHHHHHHHhhhcccccceEE
Confidence 358899999999999999877777765421100 111122478899995 7765555555554444478899
Q ss_pred EEeCCCcccchhhhcCCCEEEecchhh
Q 002744 290 IYHGSNRERSAKQFSEFDFVITTYSII 316 (885)
Q Consensus 290 v~~g~~~~~~~~~l~~~dvvItty~~l 316 (885)
-+.|+....... ..+.+|+|||.+..
T Consensus 197 ELTGD~ql~~te-i~~tqiiVTTPEKw 222 (1230)
T KOG0952|consen 197 ELTGDTQLTKTE-IADTQIIVTTPEKW 222 (1230)
T ss_pred EecCcchhhHHH-HHhcCEEEecccce
Confidence 999987654433 78899999999864
No 126
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=4.4e-10 Score=118.20 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=107.0
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..+|..++..... +.+.|||+.....++++...|...|+....+.|++....|..-+.+|+.+ ...+++ .|+
T Consensus 245 a~K~aaLl~il~~~~~---~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~lv-vTd 319 (529)
T KOG0337|consen 245 AEKEAALLSILGGRIK---DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSILV-VTD 319 (529)
T ss_pred HHHHHHHHHHHhcccc---ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccceEE-Eeh
Confidence 5688888888877643 45789999999999999999999999999999999999999899999865 455544 779
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCC
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIEN 843 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~ 843 (885)
+++.|++.+--+.||+||.|=.+.....|+||+.|-|.+ -..|-||+.+
T Consensus 320 vaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~ 368 (529)
T KOG0337|consen 320 VAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVAST 368 (529)
T ss_pred hhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEecc
Confidence 999999999999999999999999999999999999975 3556666654
No 127
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=4.7e-08 Score=115.41 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=92.2
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHH-HHHHhhccCCCceEEEEec
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-AAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~-~~i~~F~~~~~~~VlL~St 791 (885)
..|..++++.+...-+ .+.-|||-|.+...-+.|...|...|+++..++.... +++ ++|.+= + ....+-++|
T Consensus 551 ~~k~~ai~~ei~~~~~--~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~A--G-~~g~VTIAT 623 (970)
T PRK12899 551 REKYHAIVAEIASIHR--KGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAGA--G-KLGAVTVAT 623 (970)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHhc--C-CCCcEEEee
Confidence 5789999998888743 4678999999999999999999999999999888643 333 444442 3 333355588
Q ss_pred CCCccccccc--------ccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 792 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 792 ~agg~GlNL~--------~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
..+|.|.++. ..=|||.-..+-|...+.|..||+.|.|..-....
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f 676 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKF 676 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeE
Confidence 9999998865 23478999999999999999999999998755443
No 128
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.08 E-value=9.2e-09 Score=124.13 Aligned_cols=124 Identities=11% Similarity=0.061 Sum_probs=95.5
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc---CCCceEEEEecCCCcccccccccCEEE
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE---DPDCKIFLMSLKAGGVALNLTVASHVF 807 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~---~~~~~VlL~St~agg~GlNL~~A~~VI 807 (885)
.+.||+|-++....+..+...|+..+.+++.+|+.++..+|.+.+....+ ..+.. ++++|++...|+|+. .+.+|
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd~mI 516 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FDVLI 516 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cCeee
Confidence 36799999999999999999999988889999999999999998886552 22444 455889999999998 44444
Q ss_pred EeCCCCCcchHHHHhhhhhhcC--CcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 002744 808 LMDPWWNPAVEQQAQDRIHRIG--QYKPIRIVRFLIENTIEERILKLQEKKKL 858 (885)
Q Consensus 808 ~~D~~wnp~~~~QaigR~~RiG--Q~k~V~VyrLv~~~TiEe~i~~~~~~K~~ 858 (885)
-|+. -....+||.||++|.| ....++||...-......+.++....+..
T Consensus 517 -Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 567 (733)
T COG1203 517 -TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLK 567 (733)
T ss_pred -ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhc
Confidence 4432 2578899999999999 45568888777777666666665554433
No 129
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.03 E-value=6.7e-09 Score=109.31 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=91.8
Q ss_pred EEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCCCCC
Q 002744 735 GIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWN 814 (885)
Q Consensus 735 vIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wn 814 (885)
-||||..++..+.++-.|...||+..-++.+.+..+|.++.+.|.++ ++.|+. .|...|.|++=+....||+.+++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~~PvI~-AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-EIPVIA-ATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-CCCEEE-EEeccccccCCcceeEEEecCchhh
Confidence 39999999999999999999999999999999999999999999987 666655 6799999999999999999999999
Q ss_pred cchHHHHhhhhhhcCCcccEEEE
Q 002744 815 PAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 815 p~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
-+-|-|--||++|-|-..=+..|
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred hHHHHHhccccccCCCccceeee
Confidence 99999999999999976555554
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.97 E-value=3.3e-08 Score=115.72 Aligned_cols=107 Identities=21% Similarity=0.141 Sum_probs=79.5
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-h
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
..|-+-|..++.-+.... .+..-.+|.-.+|+|||=.=+.++...+..+ +.+||+||. +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-------------------kqvLvLVPEI~ 256 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-------------------KQVLVLVPEIA 256 (730)
T ss_pred cccCHHHHHHHHHHHHhc-ccccceeEeCCCCCcHHHHHHHHHHHHHHcC-------------------CEEEEEecccc
Confidence 468889999998887765 4445679999999999988777777666543 588999997 8
Q ss_pred hHHHHHHHHHHhcCCCCceEEEEeCCCcccc-----hh-hhcCCCEEEecchhhHHh
Q 002744 269 AVTQWVSEINRFTSVGSTKVLIYHGSNRERS-----AK-QFSEFDFVITTYSIIEAD 319 (885)
Q Consensus 269 ll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~-----~~-~l~~~dvvItty~~l~~~ 319 (885)
+..|-.+.|+..++ .++.++|..-.... .+ ...+..|||-|.+.+...
T Consensus 257 Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~P 310 (730)
T COG1198 257 LTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLP 310 (730)
T ss_pred chHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCc
Confidence 89999999988775 67777777544331 11 125678899888877543
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.97 E-value=1e-07 Score=112.56 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+..+-+ .+.-|||-+.+...-+.|...|...|+++-.+..... .+-.++|.+ .+ ....+-++|.
T Consensus 432 ~eK~~Ai~~ei~~~~~--~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG-~~GaVTIATN 505 (913)
T PRK13103 432 EEKYAAIITDIKECMA--LGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AG-RPGALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHh--CCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CC-CCCcEEEecc
Confidence 6799999999998843 5789999999999999999999999999988877643 223344443 33 3333455889
Q ss_pred CCccccccc-------------------------------------ccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEE
Q 002744 793 AGGVALNLT-------------------------------------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIR 835 (885)
Q Consensus 793 agg~GlNL~-------------------------------------~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~ 835 (885)
.+|.|.++. ..=|||--+.+-|--.+.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998875 3347999999999999999999999999876544
Q ss_pred EE
Q 002744 836 IV 837 (885)
Q Consensus 836 Vy 837 (885)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 43
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=1.4e-07 Score=110.19 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=95.1
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..|..++++.+..+-+ .+.-|||.|......+.|...|...|+++..++.... ++++.|-. +.+ ..-.+.++|.
T Consensus 409 ~~K~~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG-~~GaVTIATN 482 (925)
T PRK12903 409 HAKWKAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAG-QKGAITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCC-CCCeEEEecc
Confidence 6789999999888743 4789999999999999999999999999999988643 44444333 334 3334555889
Q ss_pred CCcccccccccC--------EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 793 AGGVALNLTVAS--------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 793 agg~GlNL~~A~--------~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
.+|.|.++.-.. |||..+.+-|--.+.|..||++|.|..-....|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999977443 899999999999999999999999987654443
No 133
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.95 E-value=6.2e-08 Score=100.34 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=79.5
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCC
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~ 811 (885)
+..-||||-...-.+.+...|+..||..-.++..+.+.+|.-+-..|-.+ .++|++ .|-+.|.||+-+....||+-..
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiqviv-atvafgmgidkpdvrfvihhsl 394 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQVIV-ATVAFGMGIDKPDVRFVIHHSL 394 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceEEEE-EEeeecccCCCCCeeEEEeccc
Confidence 55669999999999999999999999999999999999998888888876 899888 5589999999999999999999
Q ss_pred CCCcchHHHH
Q 002744 812 WWNPAVEQQA 821 (885)
Q Consensus 812 ~wnp~~~~Qa 821 (885)
+-+-..|-||
T Consensus 395 ~ksienyyqa 404 (695)
T KOG0353|consen 395 PKSIENYYQA 404 (695)
T ss_pred chhHHHHHHH
Confidence 9999999993
No 134
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.91 E-value=4.6e-07 Score=105.89 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccC---hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQF---TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~---~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
-+..++++|+++ +.-.|||.+. .+.++.|+.+|+..|+++..++.. +.+.++.|..+ ++.|++...
T Consensus 323 ~~e~~~elvk~l-----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~G-eidvLVGvA 391 (1187)
T COG1110 323 SLEKVVELVKKL-----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEG-EVDVLVGVA 391 (1187)
T ss_pred cHHHHHHHHHHh-----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccC-ceeEEEEec
Confidence 356666777766 3456999999 889999999999999999887663 25789999987 899988643
Q ss_pred ---CCCccccccc-ccCEEEEeCCC
Q 002744 792 ---KAGGVALNLT-VASHVFLMDPW 812 (885)
Q Consensus 792 ---~agg~GlNL~-~A~~VI~~D~~ 812 (885)
.+.-.||+|+ ...++||+..|
T Consensus 392 syYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 392 SYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccccceeecCCchhheeEEEEecCC
Confidence 4555799999 67779999987
No 135
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.85 E-value=1.5e-07 Score=111.13 Aligned_cols=95 Identities=21% Similarity=0.182 Sum_probs=65.4
Q ss_pred CceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHHHHHHHhcCCCCceEEEE
Q 002744 213 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFTSVGSTKVLIY 291 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~Ei~k~~~~~~~~v~v~ 291 (885)
+-+|+-.+|.|||-.|+--++.....+... .. .-+.....+.-|+|. +|+..|...|.+++.+-.++|.-.
T Consensus 327 nmLlCAPTGaGKTNVAvLtiLqel~~h~r~-------dg-s~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~El 398 (1674)
T KOG0951|consen 327 NMLLCAPTGAGKTNVAVLTILQELGNHLRE-------DG-SVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLEL 398 (1674)
T ss_pred cEEEeccCCCCchHHHHHHHHHHHhccccc-------cc-ceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEe
Confidence 558888999999999987776655433220 00 011122466778895 899999999999988667777777
Q ss_pred eCCCcccchhhhcCCCEEEecchhh
Q 002744 292 HGSNRERSAKQFSEFDFVITTYSII 316 (885)
Q Consensus 292 ~g~~~~~~~~~l~~~dvvItty~~l 316 (885)
.|+.. ....++....|+++|.+..
T Consensus 399 TgD~~-l~~~qieeTqVIV~TPEK~ 422 (1674)
T KOG0951|consen 399 TGDSQ-LGKEQIEETQVIVTTPEKW 422 (1674)
T ss_pred ccccc-chhhhhhcceeEEeccchh
Confidence 77654 2344566677888887753
No 136
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.84 E-value=1.7e-07 Score=99.69 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=130.3
Q ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc---------hhHHHHHHHHHHHhhcCccceeeccc-ccccC
Q 002744 549 VSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNN---------YAHIFDLLTRLRQAVDHPYLVVYSKT-ASLRG 618 (885)
Q Consensus 549 ~~~~~~~ls~~q~~~y~~l~~~~~~~~~~~~~~~~~~~~---------~~~~l~~l~~lr~~~~~p~l~~~~~~-~~~~~ 618 (885)
++.+.++|+..|+++|+.+.......+..+.+....... ...+-..+.+++.+|+||+|+...-. ..+
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~l-- 82 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQL-- 82 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S--
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCcccc--
Confidence 567788999999999999999888888888765544332 24566788899999999998632110 000
Q ss_pred CChhhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccccccccCCCCCCCccccccCCCc
Q 002744 619 ETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKS 698 (885)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (885)
T Consensus 83 -------------------------------------------------------------------------------- 82 (297)
T PF11496_consen 83 -------------------------------------------------------------------------------- 82 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhcccccCcchHHHHHHHHHHHHHh---cCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHH
Q 002744 699 SSILNRIQLDEFQSSTKIEALREEIRFMVE---RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAI 775 (885)
Q Consensus 699 ~~~l~~~~~~~~~~S~Kl~~L~~lL~~~~~---~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i 775 (885)
.+..........|+|+..|-++|..++. ...+.++||.++...++++|+.+|...++.+-+++|..-..+....-
T Consensus 83 --l~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~ 160 (297)
T PF11496_consen 83 --LLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVP 160 (297)
T ss_dssp ---STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-
T ss_pred --ccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCC
Confidence 0000001112359999999999998854 34468999999999999999999999999999999976544432222
Q ss_pred ------------Hhhcc--CCCceEEEEecCCCcc----cccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEE
Q 002744 776 ------------NRFTE--DPDCKIFLMSLKAGGV----ALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 776 ------------~~F~~--~~~~~VlL~St~agg~----GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~Vy 837 (885)
..... .....|.|+++.-... .++-...+.||-||+.+++....-..-|...-.+ +.+-|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Pii 239 (297)
T PF11496_consen 161 KNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPII 239 (297)
T ss_dssp ---------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EE
T ss_pred cccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEE
Confidence 01111 2355677777654433 2334466889999999999775444444433223 789999
Q ss_pred EEEeCCCHHHHHHHHHH
Q 002744 838 RFLIENTIEERILKLQE 854 (885)
Q Consensus 838 rLv~~~TiEe~i~~~~~ 854 (885)
+|++.+|+|--++....
T Consensus 240 rLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 240 RLVPSNSIEHIELCFPK 256 (297)
T ss_dssp EEEETTSHHHHHHHHTT
T ss_pred EEeeCCCHHHHHHHccC
Confidence 99999999988776654
No 137
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.80 E-value=3.6e-07 Score=105.45 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=67.5
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHH-HcccccccccCCCCCCCCCCCCCCCCCcEEEEech-
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALV-LAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 267 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 267 (885)
..|-++|++++.-+..- ....+|..+-.|||+.|=..| +...+ ..+++--.|-
T Consensus 296 FelD~FQk~Ai~~lerg-----~SVFVAAHTSAGKTvVAEYAialaq~h--------------------~TR~iYTSPIK 350 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERG-----DSVFVAAHTSAGKTVVAEYAIALAQKH--------------------MTRTIYTSPIK 350 (1248)
T ss_pred CCccHHHHHHHHHHHcC-----CeEEEEecCCCCcchHHHHHHHHHHhh--------------------ccceEecchhh
Confidence 45778999998765432 567899999999999973332 22221 1366777884
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhh
Q 002744 268 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 320 (885)
Q Consensus 268 sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~ 320 (885)
.|-.|=.++|+.-++. .. +..|+..- -.++..+|+|.++|++-+
T Consensus 351 ALSNQKfRDFk~tF~D--vg--LlTGDvqi-----nPeAsCLIMTTEILRsML 394 (1248)
T KOG0947|consen 351 ALSNQKFRDFKETFGD--VG--LLTGDVQI-----NPEASCLIMTTEILRSML 394 (1248)
T ss_pred hhccchHHHHHHhccc--cc--eeecceee-----CCCcceEeehHHHHHHHH
Confidence 6668888899887763 22 55665432 246779999999999875
No 138
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.78 E-value=2.2e-07 Score=111.19 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=38.0
Q ss_pred CcchHHHHHHHHHHHHHhc-------CCCccEEEEccChhHHHHHHHHHHh
Q 002744 711 QSSTKIEALREEIRFMVER-------DGSAKGIVFSQFTSFLDLINYSLHK 754 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~-------~~~~KvIIFsq~~~~l~~L~~~L~~ 754 (885)
...||...|.++|.++... .++.+|||||++..|+..|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3589999999999887665 4567999999999999999999966
No 139
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.73 E-value=1.8e-07 Score=97.39 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=72.8
Q ss_pred cccHHHHHHHHHHHHHhhhc-----cCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEE
Q 002744 190 TPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 264 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~-----~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV 264 (885)
..|-.-|+++|.++-++... .-.|.+|+|.+|.||-.|+.++|......+.. +++-|-
T Consensus 36 g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-----------------r~vwvS 98 (303)
T PF13872_consen 36 GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-----------------RAVWVS 98 (303)
T ss_pred ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-----------------ceEEEE
Confidence 35788999999998766553 23577999999999999999998876554331 355555
Q ss_pred echhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhh
Q 002744 265 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 320 (885)
Q Consensus 265 ~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~ 320 (885)
+...|..--.+.+..--.. .+.+..+..-+.... .-....|+.+||++|....
T Consensus 99 ~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~~~--~~~~~GvlF~TYs~L~~~~ 151 (303)
T PF13872_consen 99 VSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYGDI--IRLKEGVLFSTYSTLISES 151 (303)
T ss_pred CChhhhhHHHHHHHHhCCC-cccceechhhccCcC--CCCCCCccchhHHHHHhHH
Confidence 5668887777777654321 333333332211111 1124579999999998763
No 140
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.66 E-value=1.6e-06 Score=107.03 Aligned_cols=70 Identities=19% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHHHhh-ccCCCceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhc-CCccc-EEEEEEE
Q 002744 769 PARDAAINRF-TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-GQYKP-IRIVRFL 840 (885)
Q Consensus 769 ~~R~~~i~~F-~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~Ri-GQ~k~-V~VyrLv 840 (885)
..+.....+| .....++++|+. +..=+|-+-+..+++.+ |-+--.....||+.|+.|. +.+++ -.|..|+
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~ 650 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFR 650 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEEe-ccccccchHHHHHHHhccCCCCCCCCcEEEECc
Confidence 3445566665 455577777766 77888999998887655 5557788899999999995 44233 4444443
No 141
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.65 E-value=6.2e-06 Score=93.42 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=69.3
Q ss_pred HHhhccCCCceEEEEecCCCcccccccccCEE--------EEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 775 INRFTEDPDCKIFLMSLKAGGVALNLTVASHV--------FLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 775 i~~F~~~~~~~VlL~St~agg~GlNL~~A~~V--------I~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
-++|..+ +--|-|+| .+++.||.||.-.+| |-+++||+...-+|-.||.||-.|-.....+.|+++=-=|
T Consensus 850 KqrFM~G-eK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMDG-EKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhccc-cceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 4678876 55666767 899999999976555 4589999999999999999999998876666677665556
Q ss_pred HHHHHHHHHHHHHHhhhcCCC
Q 002744 847 ERILKLQEKKKLVFEGTVGGS 867 (885)
Q Consensus 847 e~i~~~~~~K~~~~~~~~~~~ 867 (885)
-+.-.+..++..-..++--|+
T Consensus 928 rRFAS~VAKRLESLGALThGD 948 (1300)
T KOG1513|consen 928 RRFASIVAKRLESLGALTHGD 948 (1300)
T ss_pred hHHHHHHHHHHHhhccccccc
Confidence 677777777766666554443
No 142
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.58 E-value=9.9e-06 Score=97.52 Aligned_cols=165 Identities=18% Similarity=0.139 Sum_probs=109.1
Q ss_pred cccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec-
Q 002744 188 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP- 266 (885)
Q Consensus 188 ~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P- 266 (885)
+...|-|+|++++.-+... .+.+++-.+|.|||+.+-.++...+..+ .++.-..|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~-----esVlV~ApTssGKTvVaeyAi~~al~~~-------------------qrviYTsPI 171 (1041)
T COG4581 116 YPFELDPFQQEAIAILERG-----ESVLVCAPTSSGKTVVAEYAIALALRDG-------------------QRVIYTSPI 171 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCC-----CcEEEEccCCCCcchHHHHHHHHHHHcC-------------------CceEeccch
Confidence 3467899999998775442 6889999999999999865555444322 35788999
Q ss_pred hhhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhhccCCCcccccccCcccchhhhhhh
Q 002744 267 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 346 (885)
Q Consensus 267 ~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (885)
++|..|=.++|..-+..-.-.|-++.|+..- -.+..++++|.+.|++-+.+.
T Consensus 172 KALsNQKyrdl~~~fgdv~~~vGL~TGDv~I-----N~~A~clvMTTEILRnMlyrg----------------------- 223 (1041)
T COG4581 172 KALSNQKYRDLLAKFGDVADMVGLMTGDVSI-----NPDAPCLVMTTEILRNMLYRG----------------------- 223 (1041)
T ss_pred hhhhhhHHHHHHHHhhhhhhhccceecceee-----CCCCceEEeeHHHHHHHhccC-----------------------
Confidence 4888998888876554212234556665432 245677777779988864221
Q ss_pred hhhccCCcchhhhhhhHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccceecEEEEecccccCCCC-cHHH
Q 002744 347 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRR-SNTA 425 (885)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIlDEaH~ikn~~-s~~~ 425 (885)
...+. ....||+||.|++.... .-.|
T Consensus 224 ---------------------------------------------------~~~~~--~i~~ViFDEvHyi~D~eRG~VW 250 (1041)
T COG4581 224 ---------------------------------------------------SESLR--DIEWVVFDEVHYIGDRERGVVW 250 (1041)
T ss_pred ---------------------------------------------------ccccc--ccceEEEEeeeeccccccchhH
Confidence 01122 34569999999998765 3445
Q ss_pred HHHHhc-ccc-cEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 426 KAVLAL-ESS-YKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 426 ~~~~~l-~~~-~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
.-+.-+ ... .-++||||- .+..|+-..+.-++
T Consensus 251 EE~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~~~~ 284 (1041)
T COG4581 251 EEVIILLPDHVRFVFLSATV--PNAEEFAEWIQRVH 284 (1041)
T ss_pred HHHHHhcCCCCcEEEEeCCC--CCHHHHHHHHHhcc
Confidence 444433 333 558999993 35677777766553
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.53 E-value=2e-05 Score=93.98 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHH-HHHHhhccCCCceEEEEec
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARD-AAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~-~~i~~F~~~~~~~VlL~St 791 (885)
..|..++++.+..+-+ .+.-|||-+.+...-+.|.+.|...||++..+..... +++ ++|.+= + ..-.+-++|
T Consensus 611 ~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h--~~EAeIVA~A--G-~~GaVTIAT 683 (1112)
T PRK12901 611 REKYNAVIEEITELSE--AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEA--G-QPGTVTIAT 683 (1112)
T ss_pred HHHHHHHHHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch--hhHHHHHHhc--C-CCCcEEEec
Confidence 6799999999998844 5789999999999999999999999999988877643 333 444442 3 222344588
Q ss_pred CCCccccccc--------ccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 792 KAGGVALNLT--------VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 792 ~agg~GlNL~--------~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
..+|.|-++. ..=+||.-+.+-+.-.+.|..||++|.|..-....
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f 736 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQF 736 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceE
Confidence 9999998866 45689999999999999999999999998655444
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.51 E-value=2.8e-05 Score=91.90 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCC-CHHHHHHHHHhhccCCCceEEEEec
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSM-SIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~-~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
..|..++++.+.... ..+.-|||-|.+...-+.|...|...|+++..+.... ...+-.++|.+ .| ..-.+-++|
T Consensus 407 ~~K~~AI~~ei~~~~--~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG-~~G~VTIAT 481 (870)
T CHL00122 407 LSKWRAIADECLQMH--QTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AG-RKGSITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cC-CCCcEEEec
Confidence 568899999888763 3578999999999999999999999999999999874 22333455655 23 333355588
Q ss_pred CCCccccccc
Q 002744 792 KAGGVALNLT 801 (885)
Q Consensus 792 ~agg~GlNL~ 801 (885)
..+|.|.++.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999986643
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.42 E-value=3.3e-05 Score=91.22 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecC-CCHHHHHHHHHhhccCCCceEEEEec
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGS-MSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~-~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
..|..++++.+..+- ..+.-|||-+.....-+.|...|...|+++..++.. ...++-.++|.+ .+ ..--+-++|
T Consensus 422 ~~K~~Ai~~ei~~~~--~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG-~~GaVTIAT 496 (939)
T PRK12902 422 IAKWRAVANETAEMH--KQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AG-RKGAVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHH--hCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cC-CCCcEEEec
Confidence 578999999988873 347899999999999999999999999999999986 333344455655 23 333344477
Q ss_pred CCCccccccc
Q 002744 792 KAGGVALNLT 801 (885)
Q Consensus 792 ~agg~GlNL~ 801 (885)
..+|.|-++.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 8888885543
No 146
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.33 E-value=2.2e-05 Score=91.38 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=57.1
Q ss_pred ecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeC-CCCCcchHHHHhhhhhhcCCccc
Q 002744 763 VGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMD-PWWNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 763 ~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D-~~wnp~~~~QaigR~~RiGQ~k~ 833 (885)
|.+++...|..+---|+.+ ...|++ +|...+.|||+++-..|+.-| +.-||-.+.|+-|||+|-|=..-
T Consensus 969 HaglNr~yR~~VEvLFR~g-~L~Vlf-aT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~l 1038 (1330)
T KOG0949|consen 969 HAGLNRKYRSLVEVLFRQG-HLQVLF-ATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTL 1038 (1330)
T ss_pred ccccchHHHHHHHHHhhcC-ceEEEE-EeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccc
Confidence 5677888998888888876 788877 779999999999776666666 46899999999999999886543
No 147
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.33 E-value=6.9e-06 Score=81.40 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=42.1
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcc
Q 002744 788 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK 832 (885)
Q Consensus 788 L~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k 832 (885)
+++|...|.|+++.+.|.||+||.|-.+.+|..+.+|++|.|-+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 558899999999999999999999999999999999999999754
No 148
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.33 E-value=1.2e-06 Score=91.17 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=81.3
Q ss_pred HHHHhhccCCCceEEEEecCCCccccccccc-------CE-EEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002744 773 AAINRFTEDPDCKIFLMSLKAGGVALNLTVA-------SH-VFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 844 (885)
Q Consensus 773 ~~i~~F~~~~~~~VlL~St~agg~GlNL~~A-------~~-VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~T 844 (885)
...+.|+++ ...|+|+| .+|++|+.||+- -+ -|.++++|+.....|-+||+||-||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 467899987 78888887 999999999943 23 467999999999999999999999988865555666777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccc
Q 002744 845 IEERILKLQEKKKLVFEGTVGGSADAF 871 (885)
Q Consensus 845 iEe~i~~~~~~K~~~~~~~~~~~~~~~ 871 (885)
.|.+......+|...+.++..|+-...
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~~~ 156 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRRAG 156 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCccccc
Confidence 899999999999999988887766553
No 149
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.31 E-value=4.2e-05 Score=89.51 Aligned_cols=107 Identities=22% Similarity=0.186 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
.++++|.+++.--.- . ..++.|.+..++.|||+.+=-+++...-.. .+.+|.+.|- ++
T Consensus 223 ~~fewq~ecls~~~~--~-e~~nliys~Pts~gktlvaeilml~~~l~~------------------rr~~llilp~vsi 281 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRL--L-ERKNLIYSLPTSAGKTLVAEILMLREVLCR------------------RRNVLLILPYVSI 281 (1008)
T ss_pred HHHHHHHHHhcchhh--h-cccceEEeCCCccchHHHHHHHHHHHHHHH------------------hhceeEecceeeh
Confidence 467777776532111 1 236889999999999999854444332211 2567888886 55
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhh
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 320 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~ 320 (885)
+.-=..++..+..+..+.|--|.|... .......-++.|+|.+......
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~--p~~~~k~~sv~i~tiEkansli 330 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFP--PEKRRKRESVAIATIEKANSLI 330 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCC--CCCcccceeeeeeehHhhHhHH
Confidence 555555666666666777777876432 2334456678899988765543
No 150
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.20 E-value=4.4e-06 Score=77.31 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=42.0
Q ss_pred ceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh-HHHHHHHHHHhcCCCCceEEEEe
Q 002744 214 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-VTQWVSEINRFTSVGSTKVLIYH 292 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~Ei~k~~~~~~~~v~v~~ 292 (885)
.+|-..+|.|||-..+--++..... ...++||+.|.-+ +..-.+.+ . ...+. ++
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~~~i~------------------~~~rvLvL~PTRvva~em~~aL----~--~~~~~-~~ 61 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVREAIK------------------RRLRVLVLAPTRVVAEEMYEAL----K--GLPVR-FH 61 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHHHHHH------------------TT--EEEEESSHHHHHHHHHHT----T--TSSEE-EE
T ss_pred eEEecCCCCCCcccccHHHHHHHHH------------------ccCeEEEecccHHHHHHHHHHH----h--cCCcc-cC
Confidence 4677889999999876543332211 1268999999854 44444444 3 23322 22
Q ss_pred CCCcccchhhhcCCCEEEecchhhHHhh
Q 002744 293 GSNRERSAKQFSEFDFVITTYSIIEADY 320 (885)
Q Consensus 293 g~~~~~~~~~l~~~dvvItty~~l~~~~ 320 (885)
...... ......-|-+++|.++...+
T Consensus 62 t~~~~~--~~~g~~~i~vMc~at~~~~~ 87 (148)
T PF07652_consen 62 TNARMR--THFGSSIIDVMCHATYGHFL 87 (148)
T ss_dssp STTSS------SSSSEEEEEHHHHHHHH
T ss_pred ceeeec--cccCCCcccccccHHHHHHh
Confidence 222111 23355567789999876643
No 151
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.14 E-value=6.9e-06 Score=87.08 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=85.1
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEE
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVF 807 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI 807 (885)
.-.|+||||....-.|-|++++...| +.++.++|.-++.+|.+.++.|... +++. |+.|++++.||+++..-.+|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkf-lictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKF-LICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEE-EEEehhhhccccccCCceEE
Confidence 45799999999999999999998764 6678899999999999999999876 6664 44779999999999999999
Q ss_pred EeCCCCCcchHHHHhhhhhhc
Q 002744 808 LMDPWWNPAVEQQAQDRIHRI 828 (885)
Q Consensus 808 ~~D~~wnp~~~~QaigR~~Ri 828 (885)
++.+|-....|..||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999988774
No 152
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.02 E-value=0.00015 Score=82.54 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=64.6
Q ss_pred ccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec-h
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-V 267 (885)
Q Consensus 189 ~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~ 267 (885)
...|-|+|..++.-+-+. -..++...+-.|||+.|=-.|+..++.. .+++--.| .
T Consensus 127 PF~LDpFQ~~aI~Cidr~-----eSVLVSAHTSAGKTVVAeYAIA~sLr~k-------------------QRVIYTSPIK 182 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRG-----ESVLVSAHTSAGKTVVAEYAIAMSLREK-------------------QRVIYTSPIK 182 (1041)
T ss_pred CcccCchHhhhhhhhcCC-----ceEEEEeecCCCcchHHHHHHHHHHHhc-------------------CeEEeeChhh
Confidence 356889999988653322 4668888999999999743333333221 36677777 4
Q ss_pred hhHHHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhh
Q 002744 268 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADY 320 (885)
Q Consensus 268 sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~ 320 (885)
+|-.|=.+|+..-+. .|-...|+-. .-.++...|+|.+.|++-+
T Consensus 183 ALSNQKYREl~~EF~----DVGLMTGDVT-----InP~ASCLVMTTEILRsML 226 (1041)
T KOG0948|consen 183 ALSNQKYRELLEEFK----DVGLMTGDVT-----INPDASCLVMTTEILRSML 226 (1041)
T ss_pred hhcchhHHHHHHHhc----ccceeeccee-----eCCCCceeeeHHHHHHHHH
Confidence 677888888876443 1334444332 1245678899999998875
No 153
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.02 E-value=5.3e-05 Score=91.17 Aligned_cols=90 Identities=13% Similarity=0.205 Sum_probs=57.5
Q ss_pred CceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHHHHHH-----Hh----cC
Q 002744 213 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEIN-----RF----TS 282 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~Ei~-----k~----~~ 282 (885)
+..+.+++|+|||.+++.+|..+....+ ...+|||||. ++.....+-|. .| ++
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~-----------------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~ 123 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYG-----------------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYE 123 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcC-----------------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 5678999999999999999888766543 2689999997 45544443332 22 33
Q ss_pred CCCceEEEEeCCCccc-----chhh---h--------cCCCEEEecchhhHHh
Q 002744 283 VGSTKVLIYHGSNRER-----SAKQ---F--------SEFDFVITTYSIIEAD 319 (885)
Q Consensus 283 ~~~~~v~v~~g~~~~~-----~~~~---l--------~~~dvvItty~~l~~~ 319 (885)
...+.+.+|....+.+ .... + ....|+|+|.+++.+.
T Consensus 124 ~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~ 176 (986)
T PRK15483 124 NTRIELYVINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSA 176 (986)
T ss_pred CceeEEEEEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhccc
Confidence 3346677777543111 1111 1 1356889999988653
No 154
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.92 E-value=0.00089 Score=79.15 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
-.|..++++.+...-+ .+..|||-+.+....+.+...|.+.||++..+...-. .|+.-+-.+. +...-|. ++|.
T Consensus 412 ~~K~~Aiv~~I~~~~~--~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~gaVT-iATN 485 (822)
T COG0653 412 EEKFKAIVEDIKERHE--KGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPGAVT-IATN 485 (822)
T ss_pred HHHHHHHHHHHHHHHh--cCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCCccc-cccc
Confidence 5788999999888744 4689999999999999999999999999988887764 5555555543 2122234 4889
Q ss_pred CCccccccc-ccC----------EEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEE
Q 002744 793 AGGVALNLT-VAS----------HVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFL 840 (885)
Q Consensus 793 agg~GlNL~-~A~----------~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv 840 (885)
.+|.|-++. ..+ +||=-+-.-+--.+.|-.||++|+|- .....+.+.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD-pG~S~F~lS 543 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD-PGSSRFYLS 543 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC-cchhhhhhh
Confidence 999999987 333 46666667677778899999999993 334444443
No 155
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=97.79 E-value=0.0025 Score=76.56 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC----C---CcEEEEecCCCHHHHHHHHHhhccCCCceEE
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS----G---VNCVQLVGSMSIPARDAAINRFTEDPDCKIF 787 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~----g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~Vl 787 (885)
....+.+++..+.+.....-+|||-.-...+..+...|+.. . +-...+|+.++..+++.+...- .++.+=+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~p--p~g~RKI 473 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRP--PKGTRKI 473 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCC--CCCcchh
Confidence 45666677776666555678999999988888888888642 2 4456689999887776664443 3355666
Q ss_pred EEecCCCcccccccccCEEE--------EeCCCC----------CcchHHHHhhhhhhcCCcccEEEEEEEeCCC
Q 002744 788 LMSLKAGGVALNLTVASHVF--------LMDPWW----------NPAVEQQAQDRIHRIGQYKPIRIVRFLIENT 844 (885)
Q Consensus 788 L~St~agg~GlNL~~A~~VI--------~~D~~w----------np~~~~QaigR~~RiGQ~k~V~VyrLv~~~T 844 (885)
|++|..+...|.+.++-+|| .|||.- .-+.-.||.|||+|. .+=..|+|++..-
T Consensus 474 IlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 474 ILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSR 545 (924)
T ss_pred hhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhh
Confidence 77999999999999888887 455532 226678888888774 4557888887654
No 156
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.78 E-value=0.0042 Score=70.86 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=79.8
Q ss_pred CccEEEEccChhHHHHHHHHHHhC----C--C--cEEEEecCCCHHHHHHHHHhhccC-CCceEEEEecCCCcccccccc
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS----G--V--NCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTV 802 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~----g--i--~~~~i~G~~~~~~R~~~i~~F~~~-~~~~VlL~St~agg~GlNL~~ 802 (885)
..-+|||=.-.+..+.+.+.|... + . -.+-++|+.+.+++.++ |... ++.+-+++||+.+.+.|.+..
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~G 334 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDG 334 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecc
Confidence 336788877776666666666442 1 1 23568999998876544 5553 377777779999999999998
Q ss_pred cCEEEE----eCCCCCc-----------chHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 803 ASHVFL----MDPWWNP-----------AVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 803 A~~VI~----~D~~wnp-----------~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
..+||= ---.||| ..-.||.-|++|-|.+.+...|||+++.-.+
T Consensus 335 I~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 335 IRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred eEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 888861 1113444 4567888888888999999999999988764
No 157
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.65 E-value=0.00019 Score=79.18 Aligned_cols=100 Identities=21% Similarity=0.337 Sum_probs=78.0
Q ss_pred CCCccEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCCCcccccccccCEEE
Q 002744 730 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVF 807 (885)
Q Consensus 730 ~~~~KvIIFsq~~~~l~~L~~~L~~~gi~-~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~agg~GlNL~~A~~VI 807 (885)
.+|.=|+-||. .-.-.+...++++|.. .++|+|+.+++.|.+--..||+ +++++||++ ++|.|-||||. ..+||
T Consensus 356 k~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVA-sDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVA-SDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEe-ecccccccccc-eeEEE
Confidence 35666677764 3344456677777765 9999999999999999999998 347788775 59999999995 68899
Q ss_pred EeCCC---------CCcchHHHHhhhhhhcCCccc
Q 002744 808 LMDPW---------WNPAVEQQAQDRIHRIGQYKP 833 (885)
Q Consensus 808 ~~D~~---------wnp~~~~QaigR~~RiGQ~k~ 833 (885)
|++.. -.-+..-|--|||+|.|.+-+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 99874 334677899999999987654
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.63 E-value=0.011 Score=69.68 Aligned_cols=97 Identities=13% Similarity=0.181 Sum_probs=71.2
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCccccccccc--CEEEEe
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA--SHVFLM 809 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A--~~VI~~ 809 (885)
|++|-|||....+.++++++....+.+++.++|..+..+ ++.| ..++|++ -|.+...|+++-.. +.|+.|
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W---~~~~Vvi-YT~~itvG~Sf~~~HF~~~f~y 353 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESW---KKYDVVI-YTPVITVGLSFEEKHFDSMFAY 353 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----cccc---cceeEEE-EeceEEEEeccchhhceEEEEE
Confidence 689999999999999999999999999999988776542 3444 3677777 55888899998733 335544
Q ss_pred --CCCCCcch--HHHHhhhhhhcCCcccEEEE
Q 002744 810 --DPWWNPAV--EQQAQDRIHRIGQYKPIRIV 837 (885)
Q Consensus 810 --D~~wnp~~--~~QaigR~~RiGQ~k~V~Vy 837 (885)
.....|.. ..|.+||+..+.. +++.||
T Consensus 354 vk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~ 384 (824)
T PF02399_consen 354 VKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVY 384 (824)
T ss_pred ecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEE
Confidence 22334543 5899999988875 455555
No 159
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.61 E-value=0.00059 Score=73.28 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
..||.|++...-+......+ ..+|+--.+|+|||+..+..++.......... ...+++++++. ++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------------~~~kvi~~t~T~~~ 73 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------------QKIKLIYLSRTVSE 73 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------------cccceeEEeccHHH
Confidence 35999999887777766665 47889999999999998766653322111100 01255666665 44
Q ss_pred HHHHHHHHHHh
Q 002744 270 VTQWVSEINRF 280 (885)
Q Consensus 270 l~qW~~Ei~k~ 280 (885)
+.|=..++++.
T Consensus 74 ~~q~i~~l~~~ 84 (289)
T smart00488 74 IEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHhc
Confidence 55655666554
No 160
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.61 E-value=0.00059 Score=73.28 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
..||.|++...-+......+ ..+|+--.+|+|||+..+..++.......... ...+++++++. ++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~-~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~-------------~~~kvi~~t~T~~~ 73 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRG-KIGILESPTGTGKTLSLLCLTLTWLRSFPERI-------------QKIKLIYLSRTVSE 73 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCcchhHHHHHHHHHHHHhCcccc-------------cccceeEEeccHHH
Confidence 35999999887777766665 47889999999999998766653322111100 01255666665 44
Q ss_pred HHHHHHHHHHh
Q 002744 270 VTQWVSEINRF 280 (885)
Q Consensus 270 l~qW~~Ei~k~ 280 (885)
+.|=..++++.
T Consensus 74 ~~q~i~~l~~~ 84 (289)
T smart00489 74 IEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHhc
Confidence 55655666554
No 161
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.0025 Score=76.65 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred CccEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhccCCCc-eEEEEecCCCcccccccccCEE
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDC-KIFLMSLKAGGVALNLTVASHV 806 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~-~VlL~St~agg~GlNL~~A~~V 806 (885)
..-+|||-.-....+...+.|.. ..+.++-++|..+.+++.+ -|+..+.- +-++++|+++.++|.+.....|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45788998888888877777776 3467788999999888777 45543333 5355599999999999999888
Q ss_pred EEe----CCCCCc--------------chHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 807 FLM----DPWWNP--------------AVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 807 I~~----D~~wnp--------------~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
|=- .+-||| +.-.||-|||+ .+.+=..|||++++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAG---R~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAG---RTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccc---cCCCceEEEecCHHHHH
Confidence 721 112333 34455555555 46667899999986655
No 162
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.50 E-value=0.0047 Score=69.94 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=63.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCCCcccccccccCEEEEeC----CCCCc-----------chHH
Q 002744 756 GVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMD----PWWNP-----------AVEQ 819 (885)
Q Consensus 756 gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~agg~GlNL~~A~~VI~~D----~~wnp-----------~~~~ 819 (885)
++.++-|+..++.+-+.++ |+. .++.+-.|++|..+.+.|.++...+||=.- -.+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 4566667777776555444 552 456776777999999999999888887322 12344 3334
Q ss_pred HHhhhhhhcCCcccEEEEEEEeCCCHHHHHH
Q 002744 820 QAQDRIHRIGQYKPIRIVRFLIENTIEERIL 850 (885)
Q Consensus 820 QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~ 850 (885)
||--|++|.|.+.+-+.|||+++++....|+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhcc
Confidence 5555666667777889999999988776654
No 163
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.42 E-value=0.001 Score=82.61 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
...+.+.|.++.... +.++|||.....+++.+...|.. .+++ .+..+.. ..|.+++++|+++ +..||| .+
T Consensus 659 ~~~ia~~i~~l~~~~-~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~-~~~iLl-gt 732 (850)
T TIGR01407 659 AQEIASYIIEITAIT-SPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNG-EKAILL-GT 732 (850)
T ss_pred HHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhC-CCeEEE-Ec
Confidence 345666666665544 35899999999999999999875 3443 2333333 5788999999975 455665 66
Q ss_pred CCCcccccccccC--EEEEeCCCCC-c-----------------------------chHHHHhhhhhhcCCcccEEE
Q 002744 792 KAGGVALNLTVAS--HVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 792 ~agg~GlNL~~A~--~VI~~D~~wn-p-----------------------------~~~~QaigR~~RiGQ~k~V~V 836 (885)
.+..+|+|++.-. .||+.-.|+- | ....|++||+.|-.+.+-|.+
T Consensus 733 ~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 733 SSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred ceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 9999999999555 4666665542 2 335789999999888776544
No 164
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.25 E-value=0.0026 Score=74.61 Aligned_cols=98 Identities=7% Similarity=0.106 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcE-EEEecCCCHHHHHHHHHhhccC--CCceEEEEec
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNC-VQLVGSMSIPARDAAINRFTED--PDCKIFLMSL 791 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~-~~i~G~~~~~~R~~~i~~F~~~--~~~~VlL~St 791 (885)
-...+.+.+..++....|.-.+.|+.+..+ ..+...|... +.+ +.+.|.. ..|..++++|.+. .+.+-+|+.|
T Consensus 454 ~~~~~~~~~~~~~~~~~G~~lvLfTS~~~~-~~~~~~l~~~-l~~~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 454 WLENVSLSTAAILRKAQGGTLVLTTAFSHI-SAIGQLVELG-IPAEIVIQSEK--NRLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechHHHH-HHHHHHHHhh-cCCCEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEEeC
Confidence 345566677777666666666677766554 4455556442 223 4455644 2567899999974 1223345577
Q ss_pred CCCcccccc----------cccCEEEEeCCCCCcc
Q 002744 792 KAGGVALNL----------TVASHVFLMDPWWNPA 816 (885)
Q Consensus 792 ~agg~GlNL----------~~A~~VI~~D~~wnp~ 816 (885)
.+..+|+|+ ..+..|||.-+|+-|.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~ 564 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLN 564 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcC
Confidence 999999999 3678899988888774
No 165
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.25 E-value=0.002 Score=66.90 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHhhhccCCC-ceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 192 LLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~~~~g-gILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
|-+.|..++.-++.. .+ .++.-.+|+|||-+..+++........ .......+++||++|. ..
T Consensus 2 ln~~Q~~Ai~~~~~~-----~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~-----------~~~~~~~~~il~~~~sN~a 65 (236)
T PF13086_consen 2 LNESQREAIQSALSS-----NGITLIQGPPGTGKTTTLASIIAQLLQRFK-----------SRSADRGKKILVVSPSNAA 65 (236)
T ss_dssp --HHHHHHHHHHCTS-----SE-EEEE-STTSSHHHHHHHHHHHH------------------HCCCSS-EEEEESSHHH
T ss_pred CCHHHHHHHHHHHcC-----CCCEEEECCCCCChHHHHHHHHHHhccchh-----------hhhhhccccceeecCCchh
Confidence 678999999877664 34 788889999999877776666521000 0000123799999996 45
Q ss_pred HHHHHHHHHH
Q 002744 270 VTQWVSEINR 279 (885)
Q Consensus 270 l~qW~~Ei~k 279 (885)
+.+-...+.+
T Consensus 66 vd~~~~~l~~ 75 (236)
T PF13086_consen 66 VDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 6777777766
No 166
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.20 E-value=0.0013 Score=74.22 Aligned_cols=80 Identities=23% Similarity=0.275 Sum_probs=63.3
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh-
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA- 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl- 269 (885)
.|-..|..+|.-.+.+ .=.||--.+|+|||+++.+++.++.+.+. +|+||++|..+
T Consensus 410 kLN~SQ~~AV~~VL~r-----plsLIQGPPGTGKTvtsa~IVyhl~~~~~------------------~~VLvcApSNiA 466 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQR-----PLSLIQGPPGTGKTVTSATIVYHLARQHA------------------GPVLVCAPSNIA 466 (935)
T ss_pred hhchHHHHHHHHHHcC-----CceeeecCCCCCceehhHHHHHHHHHhcC------------------CceEEEcccchh
Confidence 4677899999888776 34588889999999999888777765432 69999999865
Q ss_pred HHHHHHHHHHhcCCCCceEEEEeCCCcc
Q 002744 270 VTQWVSEINRFTSVGSTKVLIYHGSNRE 297 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~~~~v~v~~g~~~~ 297 (885)
+.|-..-|++. .++|+......++
T Consensus 467 VDqLaeKIh~t----gLKVvRl~aksRE 490 (935)
T KOG1802|consen 467 VDQLAEKIHKT----GLKVVRLCAKSRE 490 (935)
T ss_pred HHHHHHHHHhc----CceEeeeehhhhh
Confidence 78988888876 6888887765544
No 167
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.11 E-value=0.0046 Score=64.76 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=63.3
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhH
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 270 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll 270 (885)
.+++-|+-++--| . .|-|.=..+|=|||+++...+ ...... .+++=||+.+..+
T Consensus 77 ~p~~vQll~~l~L--~-----~G~laEm~TGEGKTli~~l~a-~~~AL~------------------G~~V~vvT~NdyL 130 (266)
T PF07517_consen 77 RPYDVQLLGALAL--H-----KGRLAEMKTGEGKTLIAALPA-ALNALQ------------------GKGVHVVTSNDYL 130 (266)
T ss_dssp ---HHHHHHHHHH--H-----TTSEEEESTTSHHHHHHHHHH-HHHHTT------------------SS-EEEEESSHHH
T ss_pred cccHHHHhhhhhc--c-----cceeEEecCCCCcHHHHHHHH-HHHHHh------------------cCCcEEEeccHHH
Confidence 3556666666433 2 477899999999999984333 333222 1577888887544
Q ss_pred ----HHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchhhHHhhhh
Q 002744 271 ----TQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 322 (885)
Q Consensus 271 ----~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~ 322 (885)
.+|...+-+++ .+.+-...........+..-..||+-+|-+.+.-++-+
T Consensus 131 A~RD~~~~~~~y~~L---Glsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lr 183 (266)
T PF07517_consen 131 AKRDAEEMRPFYEFL---GLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLR 183 (266)
T ss_dssp HHHHHHHHHHHHHHT---T--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHh---hhccccCccccCHHHHHHHHhCcccccccchhhHHHHH
Confidence 66888887777 47777777665433333344678888888877766533
No 168
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.94 E-value=0.00042 Score=50.37 Aligned_cols=40 Identities=43% Similarity=0.961 Sum_probs=29.7
Q ss_pred hccccCcCCCCccccCCchhhhhhhhhccccccC--CCCCCC
Q 002744 631 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV--AKCPTC 670 (885)
Q Consensus 631 ~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~--~~cp~c 670 (885)
|++|.+...+|+.+.|||.||..|+......... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 6899999999999999999999999887664433 478776
No 169
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.88 E-value=0.2 Score=61.20 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=34.4
Q ss_pred CceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcc
Q 002744 783 DCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYK 832 (885)
Q Consensus 783 ~~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k 832 (885)
+..+++++|.+...|+++- .+.+|. |+. .-...+|+.||+.|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCC
Confidence 3456777999999999986 344443 332 2467899999999999854
No 170
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=96.82 E-value=0.00075 Score=65.67 Aligned_cols=51 Identities=35% Similarity=0.763 Sum_probs=42.1
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccc--------------cccCCCCCCCCCCccccc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSA--------------SKFVAKCPTCSIPLTVDF 678 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~--------------~~~~~~cp~c~~~~~~~~ 678 (885)
...|++|.+...+++++.|+|.||..|+..+.. ......||.|+..+....
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 457999999999999999999999999987643 123568999999887543
No 171
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.77 E-value=0.0029 Score=76.92 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCC-------cEEEEecCCCHHHHHHHHHhhccC---CCce
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV-------NCVQLVGSMSIPARDAAINRFTED---PDCK 785 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi-------~~~~i~G~~~~~~R~~~i~~F~~~---~~~~ 785 (885)
+..+.+.|..+....+ ..+|||......++.+...+...|+ +.+.+-+... .++.+++++|... +.--
T Consensus 507 ~~~l~~~i~~~~~~~p-gg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 507 VRNLGELLVEFSKIIP-DGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHHHHhhcCC-CcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCce
Confidence 4556666666655544 5788888888888888777765432 2344444322 5788999999752 1223
Q ss_pred EEEEec--CCCccccccc--ccCEEEEeCCCC-Ccc------------------------------hHHHHhhhhhhcCC
Q 002744 786 IFLMSL--KAGGVALNLT--VASHVFLMDPWW-NPA------------------------------VEQQAQDRIHRIGQ 830 (885)
Q Consensus 786 VlL~St--~agg~GlNL~--~A~~VI~~D~~w-np~------------------------------~~~QaigR~~RiGQ 830 (885)
||+ ++ ...+||||+. .+..||++-.|+ +|. ...|++||+.|--+
T Consensus 585 vL~-av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 585 VLL-SVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred EEE-EecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 455 54 5788999999 467788888777 441 23688999999777
Q ss_pred cccEEE
Q 002744 831 YKPIRI 836 (885)
Q Consensus 831 ~k~V~V 836 (885)
.+.+.|
T Consensus 664 D~G~ii 669 (705)
T TIGR00604 664 DYGSIV 669 (705)
T ss_pred ceEEEE
Confidence 666544
No 172
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00063 Score=67.34 Aligned_cols=56 Identities=38% Similarity=0.813 Sum_probs=47.8
Q ss_pred hhhhhhhccccCcCCCCccccCCchhhhhhhhhccccc-cCCCCCCCCCCccccccc
Q 002744 625 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPLTVDFTA 680 (885)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~-~~~~cp~c~~~~~~~~~~ 680 (885)
+.....|.+|.+.+++|+++.|||.||=.|+.++.... ....||.|+..+..+...
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 34456799999999999999999999999999999855 456779999988876654
No 173
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.61 E-value=0.0079 Score=60.44 Aligned_cols=44 Identities=30% Similarity=0.161 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccc
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIR 239 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~ 239 (885)
++-++|...+.-+... .-.++--..|+|||+.|++.++.....+
T Consensus 4 p~~~~Q~~~~~al~~~-----~~v~~~G~AGTGKT~LA~a~Al~~v~~g 47 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN-----DLVIVNGPAGTGKTFLALAAALELVKEG 47 (205)
T ss_dssp --SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHHHHhC
Confidence 3557899988887733 3567788999999999999888776543
No 174
>PRK10536 hypothetical protein; Provisional
Probab=96.60 E-value=0.0081 Score=62.13 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=32.0
Q ss_pred cEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCch
Q 002744 407 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRV 448 (885)
Q Consensus 407 ~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l 448 (885)
++|||||||++.- ......+.++....+++++|-|-|..+
T Consensus 178 ~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 178 AVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred CEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 6899999999866 345556677889999999999987553
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.54 E-value=0.0068 Score=70.76 Aligned_cols=45 Identities=13% Similarity=-0.068 Sum_probs=35.7
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhc
Q 002744 784 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI 828 (885)
Q Consensus 784 ~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~Ri 828 (885)
+.-||.|-.+.-+|.+=+..=++.-+-+.-+-..-.|-+||..|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 355777888888888888777777777777778888888888886
No 176
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.42 E-value=0.038 Score=60.63 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=45.5
Q ss_pred eEEEEecCCCcccccccccCEEEEeCCC------CCc-----------chHHHHhhhhhhcCCcccEEEEEEEeCCCHH
Q 002744 785 KIFLMSLKAGGVALNLTVASHVFLMDPW------WNP-----------AVEQQAQDRIHRIGQYKPIRIVRFLIENTIE 846 (885)
Q Consensus 785 ~VlL~St~agg~GlNL~~A~~VI~~D~~------wnp-----------~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiE 846 (885)
+-+++||..+...+.+...-+|| ||. +|| ..-.||.-|+.|.|.+++-..++|+++...+
T Consensus 314 RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 314 RKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred ceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 44566999999888887665555 442 444 5667889999999999999999999876543
No 177
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.42 E-value=0.078 Score=60.44 Aligned_cols=76 Identities=20% Similarity=0.363 Sum_probs=52.4
Q ss_pred EEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCCCcccccccccCEEEEeCC------CCCc--------------ch
Q 002744 759 CVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKAGGVALNLTVASHVFLMDP------WWNP--------------AV 817 (885)
Q Consensus 759 ~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~agg~GlNL~~A~~VI~~D~------~wnp--------------~~ 817 (885)
.+-|+...+.+.+.++ |.. .++.+-+++.|..+.+.|.+....+|| || .+|| +.
T Consensus 509 v~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAs 583 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKAS 583 (902)
T ss_pred EeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhh
Confidence 4557788887666555 443 445665666889999999999888776 33 3455 45
Q ss_pred HHHHhhhhhhcCCcccEEEEEEEeC
Q 002744 818 EQQAQDRIHRIGQYKPIRIVRFLIE 842 (885)
Q Consensus 818 ~~QaigR~~RiGQ~k~V~VyrLv~~ 842 (885)
-.||-|||+|-| +=..|||++.
T Consensus 584 A~QRaGRAGRtg---PGKCfRLYt~ 605 (902)
T KOG0923|consen 584 ANQRAGRAGRTG---PGKCFRLYTA 605 (902)
T ss_pred hhhhccccCCCC---CCceEEeech
Confidence 567777777765 4567888874
No 178
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.41 E-value=0.019 Score=71.49 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
..||+|.+.+..+......+ +.+++-..+|+|||+..+.-+..... . .++++|.+|. .|
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~-~~~~~eA~TG~GKT~ayLlp~~~~~~-~------------------~~~vvi~t~t~~L 304 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHS-EKSLIEAPTGTGKTLGYLLPALYYAI-T------------------EKPVVISTNTKVL 304 (850)
T ss_pred ccCHHHHHHHHHHHHHhccC-CcEEEECCCCCchhHHHHHHHHHHhc-C------------------CCeEEEEeCcHHH
Confidence 57899998777666655443 46677789999999987654443322 1 1588999997 66
Q ss_pred HHHHHH-HHH---HhcCCCCceEEEEeCCCc
Q 002744 270 VTQWVS-EIN---RFTSVGSTKVLIYHGSNR 296 (885)
Q Consensus 270 l~qW~~-Ei~---k~~~~~~~~v~v~~g~~~ 296 (885)
..||.. ++. +.++ ..+++.+..|...
T Consensus 305 q~Ql~~~~~~~l~~~~~-~~~~~~~~kG~~~ 334 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILN-FKINAALIKGKSN 334 (850)
T ss_pred HHHHHHHHHHHHHHHcC-CCceEEEEEcchh
Confidence 788855 444 3433 2477777777553
No 179
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.31 E-value=0.033 Score=68.56 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCc
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 795 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg 795 (885)
...+.+.|..+. .. +.+++|+..+..+++.+...|....++. ...|... .|.+++++|+++ +-.||| .+....
T Consensus 633 ~~~~~~~i~~~~-~~-~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~-~~~vLl-G~~sFw 705 (820)
T PRK07246 633 AEEIAKRLEELK-QL-QQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRG-EQQILL-GLGSFW 705 (820)
T ss_pred HHHHHHHHHHHH-hc-CCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcC-CCeEEE-ecchhh
Confidence 346666666654 32 4588888888888888888887655444 4445432 356799999874 445666 559999
Q ss_pred cccccc--ccCEEEEeCCCCC-c-----------------------------chHHHHhhhhhhcCCcccEEE
Q 002744 796 VALNLT--VASHVFLMDPWWN-P-----------------------------AVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 796 ~GlNL~--~A~~VI~~D~~wn-p-----------------------------~~~~QaigR~~RiGQ~k~V~V 836 (885)
||++++ .+..||+.-+|+- | ....|++||..|--..+.|.+
T Consensus 706 EGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 706 EGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred CCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 999997 3455666654432 3 234688889988776666544
No 180
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.26 E-value=0.0019 Score=46.17 Aligned_cols=38 Identities=50% Similarity=1.122 Sum_probs=30.9
Q ss_pred hccccCcCCCC-ccccCCchhhhhhhhhccccccCCCCCCC
Q 002744 631 CGLCNDLADDP-VVTNCGHAFCKACLFDSSASKFVAKCPTC 670 (885)
Q Consensus 631 ~~~~~~~~~~~-~~~~c~~~~c~~c~~~~~~~~~~~~cp~c 670 (885)
|++|.+...++ +++.|||.||..|+.++... ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 67888888888 68999999999999998776 3788876
No 181
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.22 E-value=0.031 Score=67.87 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~-~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
+..+...|..+....++ ++|||.....++..+...|...... .+...|.. .+.+++++|.+..+. .+++.+...
T Consensus 464 ~~~~~~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf 538 (654)
T COG1199 464 LAKLAAYLREILKASPG-GVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSF 538 (654)
T ss_pred HHHHHHHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccc
Confidence 45566666666666555 8999999999999999999887653 34444554 445899999986554 566678999
Q ss_pred ccccccc--ccCEEEEeCCCCCc------------------------------chHHHHhhhhhhcCCcccEEE
Q 002744 795 GVALNLT--VASHVFLMDPWWNP------------------------------AVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 795 g~GlNL~--~A~~VI~~D~~wnp------------------------------~~~~QaigR~~RiGQ~k~V~V 836 (885)
.||+|++ .+..||+.-.|+-+ ....|++||+.|--+.+.|.|
T Consensus 539 ~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred cCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 9999999 44678888777652 456899999999766666665
No 182
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.16 E-value=0.014 Score=57.27 Aligned_cols=99 Identities=16% Similarity=0.197 Sum_probs=62.9
Q ss_pred CccEEEEccChhHHHHHHHHHHhCC----CcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC--CCccccccc--cc
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSG----VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK--AGGVALNLT--VA 803 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~g----i~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~--agg~GlNL~--~A 803 (885)
+.++|||......++.+...+...+ +... ..+ ..++.+++++|.++. -- +|+++. ...+|+|+. .|
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~-~~-il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGE-GA-ILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSS-SE-EEEEETTSCCGSSS--ECESE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhcc-Ce-EEEEEecccEEEeecCCCchh
Confidence 4799999999999999999988764 3322 222 357889999999863 33 444556 889999999 46
Q ss_pred CEEEEeCCCCCc------------------------------chHHHHhhhhhhcCCcccEEE
Q 002744 804 SHVFLMDPWWNP------------------------------AVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 804 ~~VI~~D~~wnp------------------------------~~~~QaigR~~RiGQ~k~V~V 836 (885)
..||+.-+|+-+ ....|++||+.|-.+.+-+.+
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 678888877632 223688999998777655544
No 183
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.11 E-value=0.0026 Score=46.05 Aligned_cols=40 Identities=40% Similarity=0.984 Sum_probs=35.1
Q ss_pred hccccCcCCCCc-cccCCchhhhhhhhhccccccCCCCCCC
Q 002744 631 CGLCNDLADDPV-VTNCGHAFCKACLFDSSASKFVAKCPTC 670 (885)
Q Consensus 631 ~~~~~~~~~~~~-~~~c~~~~c~~c~~~~~~~~~~~~cp~c 670 (885)
|++|.+....+. ++.|+|.||..|+..+........||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 678888888888 9999999999999998887777778876
No 184
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0032 Score=64.33 Aligned_cols=51 Identities=29% Similarity=0.760 Sum_probs=42.7
Q ss_pred hhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 625 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
......|.+|.+...+|..++|||.||=.|+..+-....+ ||.||......
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~e--CPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAE--CPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccC--CCcccccCCCc
Confidence 3445679999999999999999999999999998765544 99999877543
No 185
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.07 E-value=0.045 Score=64.55 Aligned_cols=98 Identities=17% Similarity=0.164 Sum_probs=60.3
Q ss_pred CCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHH----HHHHccccc---cc-ccCC---CCCCCC--
Q 002744 184 DPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAI----ALVLAKREI---RG-TIGE---LDASSS-- 250 (885)
Q Consensus 184 ~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~ai----ali~~~~~~---~~-~~~~---~~~~~~-- 250 (885)
.|-.+-..+||-|+.-...++.-+.+.. +|+|-..+|+|||+.-| |...++... +. .+.. .+..++
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q-~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~ 92 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQ-NGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDS 92 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhh-hhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccC
Confidence 4555556789999998888888887775 68999999999999754 222222210 00 0000 000000
Q ss_pred ---CC--CCCC----CCCcEEEEechh--hHHHHHHHHHHhcC
Q 002744 251 ---SS--TGLL----GIKATLVICPVA--AVTQWVSEINRFTS 282 (885)
Q Consensus 251 ---~~--~~~~----~~~~~LIV~P~s--ll~qW~~Ei~k~~~ 282 (885)
.+ .+.+ -..|.++.+... -+.|-.+|+.+..-
T Consensus 93 ~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y 135 (945)
T KOG1132|consen 93 GGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGY 135 (945)
T ss_pred CCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCC
Confidence 00 1111 136888888864 48999999998654
No 186
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.05 E-value=0.05 Score=68.19 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCC--cEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCC
Q 002744 716 IEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGV--NCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 716 l~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi--~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~a 793 (885)
...+.+.|..+....+ .++|||.....++..+...|..... .+..+.-+++...|.+++++|+++ +-.||| .+..
T Consensus 737 ~~~la~~i~~l~~~~~-g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLl-G~~s 813 (928)
T PRK08074 737 IEEVAAYIAKIAKATK-GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILL-GTSS 813 (928)
T ss_pred HHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEE-ecCc
Confidence 3566666766655443 4777777778888888888865422 122333233224678899999975 334555 5689
Q ss_pred Cccccccccc--CEEEEeCCCC-Ccc-----------------------------hHHHHhhhhhhcCCcccEEE
Q 002744 794 GGVALNLTVA--SHVFLMDPWW-NPA-----------------------------VEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 794 gg~GlNL~~A--~~VI~~D~~w-np~-----------------------------~~~QaigR~~RiGQ~k~V~V 836 (885)
..||+|++.. ..||+.-+|+ +|. ...|++||+-|-.+.+.|.+
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ 888 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVF 888 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEE
Confidence 9999999944 6788888776 342 23688899999887776544
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.05 E-value=0.019 Score=68.50 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHHHHHHHhcCCCCceEEEEeCCCccc
Q 002744 220 MGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFTSVGSTKVLIYHGSNRER 298 (885)
Q Consensus 220 mGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~ 298 (885)
.|+|||-.-+.++......+ +.+||++|. ++..|+..-|...++ ...+.++|......
T Consensus 169 ~GSGKTevyl~~i~~~l~~G-------------------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~ 227 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG-------------------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPA 227 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC-------------------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHH
Confidence 49999999888887766533 578999997 789999999999886 35688888755433
Q ss_pred ch-----h-hhcCCCEEEecchhhHH
Q 002744 299 SA-----K-QFSEFDFVITTYSIIEA 318 (885)
Q Consensus 299 ~~-----~-~l~~~dvvItty~~l~~ 318 (885)
.. . ..+...|||-|.+.+..
T Consensus 228 ~R~~~w~~~~~G~~~IViGtRSAvFa 253 (665)
T PRK14873 228 DRYRRWLAVLRGQARVVVGTRSAVFA 253 (665)
T ss_pred HHHHHHHHHhCCCCcEEEEcceeEEe
Confidence 11 1 12456789988887643
No 188
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.92 E-value=0.005 Score=49.41 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=39.9
Q ss_pred hhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccc
Q 002744 630 VCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 676 (885)
Q Consensus 630 ~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~ 676 (885)
.|++|.+...+|++..|||.||..|+..+... ...||.|+.++..
T Consensus 3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~ 47 (63)
T smart00504 3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTH 47 (63)
T ss_pred CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCCh
Confidence 59999999999999999999999999998866 5689999887743
No 189
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.80 E-value=0.054 Score=67.88 Aligned_cols=86 Identities=8% Similarity=0.089 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
..||-|.+....+....... ...++=..+|+|||+--+.-++..... ..++++|-++. .|
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~-~~~~iEA~TGtGKTlaYLlpa~~~a~~------------------~~~~vvIsT~T~~L 317 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDS-EHALIEAGTGTGKSLAYLLPAAYFAKK------------------KEEPVVISTYTIQL 317 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CCEEEECCCCCchhHHHHHHHHHHhhc------------------cCCeEEEEcCCHHH
Confidence 57899999777766666544 345566699999999754322221111 11577777776 44
Q ss_pred HHH-HHHH---HHHhcCCCCceEEEEeCCCc
Q 002744 270 VTQ-WVSE---INRFTSVGSTKVLIYHGSNR 296 (885)
Q Consensus 270 l~q-W~~E---i~k~~~~~~~~v~v~~g~~~ 296 (885)
..| +.++ +.+.++. .+++.+..|..+
T Consensus 318 Q~Ql~~kDiP~L~~~~~~-~~~~~~lKGr~n 347 (928)
T PRK08074 318 QQQLLEKDIPLLQKIFPF-PVEAALLKGRSH 347 (928)
T ss_pred HHHHHHhhHHHHHHHcCC-CceEEEEEcccc
Confidence 456 3444 4455542 567777776554
No 190
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=95.79 E-value=0.031 Score=63.34 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=50.6
Q ss_pred cccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech
Q 002744 188 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV 267 (885)
Q Consensus 188 ~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~ 267 (885)
+...|-+-|+.++.++.... .=.++--.+|+|||.+..-+|..+.... +.+||.+|.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k----~l~~I~GPPGTGKT~TlvEiI~qlvk~~-------------------k~VLVcaPS 238 (649)
T KOG1803|consen 182 FNKNLNSSQKAAVSFAINNK----DLLIIHGPPGTGKTRTLVEIISQLVKQK-------------------KRVLVCAPS 238 (649)
T ss_pred CCccccHHHHHHHHHHhccC----CceEeeCCCCCCceeeHHHHHHHHHHcC-------------------CeEEEEcCc
Confidence 44568899999999987652 1236667999999999888877766533 588999998
Q ss_pred hh-HHHHHHHHH
Q 002744 268 AA-VTQWVSEIN 278 (885)
Q Consensus 268 sl-l~qW~~Ei~ 278 (885)
.+ +.+-.+-+.
T Consensus 239 n~AVdNiverl~ 250 (649)
T KOG1803|consen 239 NVAVDNIVERLT 250 (649)
T ss_pred hHHHHHHHHHhc
Confidence 65 677766543
No 191
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.71 E-value=0.044 Score=61.01 Aligned_cols=116 Identities=14% Similarity=0.062 Sum_probs=87.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHH----HHHHhCCC----cEEEEecCCCHHHHHHHHHhhccCCC
Q 002744 712 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIN----YSLHKSGV----NCVQLVGSMSIPARDAAINRFTEDPD 783 (885)
Q Consensus 712 ~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~----~~L~~~gi----~~~~i~G~~~~~~R~~~i~~F~~~~~ 783 (885)
.++|+.....++.+++.+ +-++|-||..+...+++- ..|..-|- .+..+.|+-..++|.++-...-.+ +
T Consensus 507 ~~~~i~E~s~~~~~~i~~--~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G-~ 583 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQH--GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG-K 583 (1034)
T ss_pred hhhHHHHHHHHHHHHHHc--CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC-e
Confidence 367888888888887654 589999999998766654 33333222 123466888888888876555433 5
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCc
Q 002744 784 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 831 (885)
Q Consensus 784 ~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~ 831 (885)
..-+ ++|.+...||++-.-+.|+.+-.|.+-+...|-.|||+|-...
T Consensus 584 L~gi-IaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 584 LCGI-IATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred eeEE-EecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 5444 4889999999999999999999999999999999999996643
No 192
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.68 E-value=0.0059 Score=67.10 Aligned_cols=46 Identities=35% Similarity=0.845 Sum_probs=39.9
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
...|.+|.+....|+++.|+|.||..|+..+... ...||.|+..+.
T Consensus 26 ~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~ 71 (397)
T TIGR00599 26 SLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQ 71 (397)
T ss_pred ccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccc
Confidence 4579999999999999999999999999887654 348999998765
No 193
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0039 Score=72.32 Aligned_cols=49 Identities=33% Similarity=0.835 Sum_probs=41.1
Q ss_pred hhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccccc
Q 002744 629 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDF 678 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~ 678 (885)
-.|+.|++-+.+.+++.|+|.||..|+.....+. ..+||.|..++..+.
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etR-qRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETR-QRKCPKCNAAFGAND 692 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHh-cCCCCCCCCCCCccc
Confidence 3499999999999999999999999997654433 568999999987653
No 194
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.0051 Score=67.90 Aligned_cols=49 Identities=33% Similarity=0.768 Sum_probs=42.6
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccc---cCCCCCCCCCCccc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASK---FVAKCPTCSIPLTV 676 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~---~~~~cp~c~~~~~~ 676 (885)
...|++|......++.+.|||.||-.|+..+.... .-..||.|+..+..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 34799999999999999999999999999877644 56789999988765
No 195
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.60 E-value=0.0057 Score=46.49 Aligned_cols=45 Identities=33% Similarity=0.790 Sum_probs=38.4
Q ss_pred hhhccccCcCCCCccccCCch-hhhhhhhhccccccCCCCCCCCCCcc
Q 002744 629 QVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~-~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
..|.+|.+...+.++.+|+|. +|..|...... ....||.|+.++.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLK--RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH--TTSBBTTTTBB-S
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcc--cCCCCCcCChhhc
Confidence 468999999999999999999 99999988776 7789999998764
No 196
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.53 E-value=0.13 Score=61.47 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
..|-+.|+.++..++.. ....++--.+|+|||.+++.++......+ .++||++|.+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~----~~~~lI~GpPGTGKT~t~~~ii~~~~~~g-------------------~~VLv~a~sn~ 212 (637)
T TIGR00376 156 PNLNESQKEAVSFALSS----KDLFLIHGPPGTGKTRTLVELIRQLVKRG-------------------LRVLVTAPSNI 212 (637)
T ss_pred CCCCHHHHHHHHHHhcC----CCeEEEEcCCCCCHHHHHHHHHHHHHHcC-------------------CCEEEEcCcHH
Confidence 46899999999887642 12457788899999999888877655321 47899999854
Q ss_pred -HHHHHHHHHHhcCCCCceEEEEeCC
Q 002744 270 -VTQWVSEINRFTSVGSTKVLIYHGS 294 (885)
Q Consensus 270 -l~qW~~Ei~k~~~~~~~~v~v~~g~ 294 (885)
+.+....+... ..+++.....
T Consensus 213 Avd~l~e~l~~~----~~~vvRlg~~ 234 (637)
T TIGR00376 213 AVDNLLERLALC----DQKIVRLGHP 234 (637)
T ss_pred HHHHHHHHHHhC----CCcEEEeCCc
Confidence 67777777654 3455554443
No 197
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0071 Score=57.29 Aligned_cols=48 Identities=42% Similarity=0.863 Sum_probs=36.9
Q ss_pred hhhhhhccccCcCC--CCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 626 HVQQVCGLCNDLAD--DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 626 ~~~~~~~~~~~~~~--~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
.....|++|.+... .++-+.|||.||+.|+.+.. ....+||.|+..+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~al--k~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDAL--KNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHH--HhCCCCCCcccccc
Confidence 33467999987653 45668999999999997754 45679999997654
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.35 E-value=0.019 Score=53.65 Aligned_cols=35 Identities=31% Similarity=0.410 Sum_probs=26.8
Q ss_pred cEEEEecccccCCCCcHHHHHHHhc--ccccEEEEeCcC
Q 002744 407 ERIILDEAHFIKDRRSNTAKAVLAL--ESSYKWALSGTP 443 (885)
Q Consensus 407 ~~vIlDEaH~ikn~~s~~~~~~~~l--~~~~r~lLTGTP 443 (885)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 24455566655 566779999999
No 199
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.33 E-value=0.062 Score=59.71 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=30.8
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHH-HHHHHHH
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQ-WVSEINR 279 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~q-W~~Ei~k 279 (885)
|+-=..|+|||+.++.++..+.... .....+++|++..+.. -...+..
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~~~~-----------------~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQNSE-----------------EGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhhccc-----------------cCCceEEEEecchHHHHHHHHHhh
Confidence 4445689999999999988771111 1246788888755544 4444543
No 200
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.21 E-value=0.011 Score=60.55 Aligned_cols=46 Identities=28% Similarity=0.765 Sum_probs=36.5
Q ss_pred hhhhccccCcCCC--------CccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLADD--------PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~~--------~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
...|++|.+...+ ++++.|+|.||..|+..+.. ....||.||.++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 3589999986433 35678999999999998765 4568999998764
No 201
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=94.89 E-value=0.019 Score=44.89 Aligned_cols=42 Identities=36% Similarity=1.014 Sum_probs=22.6
Q ss_pred hhccccCcCCCCc-cccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 630 VCGLCNDLADDPV-VTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 630 ~~~~~~~~~~~~~-~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
.|..|.+..+.|+ +..|.|.||+.|+.+... ..||.|..+.-
T Consensus 9 rCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~----~~CPvC~~Paw 51 (65)
T PF14835_consen 9 RCSICFDILKEPVCLGGCEHIFCSSCIRDCIG----SECPVCHTPAW 51 (65)
T ss_dssp S-SSS-S--SS-B---SSS--B-TTTGGGGTT----TB-SSS--B-S
T ss_pred CCcHHHHHhcCCceeccCccHHHHHHhHHhcC----CCCCCcCChHH
Confidence 5899999999997 689999999999977544 34999998864
No 202
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.88 E-value=0.022 Score=41.92 Aligned_cols=40 Identities=38% Similarity=0.921 Sum_probs=31.1
Q ss_pred hccccCcC---CCCccccCCchhhhhhhhhccccccCCCCCCCCC
Q 002744 631 CGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSI 672 (885)
Q Consensus 631 ~~~~~~~~---~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~ 672 (885)
|++|.... ..+.++.|+|.||..|+.... .....||.|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 45565444 457899999999999998877 66788999863
No 203
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.84 E-value=0.19 Score=61.40 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
++||.|++....+......+ ..+++--.+|+|||+.+|..++....... ...+++..+.. +-
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~-~~~llEsPTGtGKTlslL~~aL~~~~~~~----------------~~~kIiy~sRThsQ 72 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG-DEAILEMPSGTGKTISLLSLILAYQQEKP----------------EVRKIIYASRTHSQ 72 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC-CceEEeCCCCCCccHHHHHHHHHHHHhcc----------------ccccEEEEcccchH
Confidence 36999999888888877776 58899999999999998877665433211 11245555555 56
Q ss_pred HHHHHHHHHHh
Q 002744 270 VTQWVSEINRF 280 (885)
Q Consensus 270 l~qW~~Ei~k~ 280 (885)
+.|-.+|+++-
T Consensus 73 l~q~i~Elk~~ 83 (705)
T TIGR00604 73 LEQATEELRKL 83 (705)
T ss_pred HHHHHHHHHhh
Confidence 89999999883
No 204
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.72 E-value=0.19 Score=47.56 Aligned_cols=46 Identities=7% Similarity=0.080 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhhccCCCceEEEEecCCCccccccc--ccCEEEEeCCCC
Q 002744 767 SIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLT--VASHVFLMDPWW 813 (885)
Q Consensus 767 ~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~--~A~~VI~~D~~w 813 (885)
+..+..+++++|.+..+.-|| +++....+|+|++ .+..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL-~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACENAIL-LATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEE-EEccceecceecCCCCeeEEEEEecCC
Confidence 334678899999875333454 4666699999999 355688877664
No 205
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.69 E-value=0.22 Score=60.49 Aligned_cols=92 Identities=11% Similarity=0.183 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC-CCcEEEEecCCCHHHHHHHHHhhccC---CCceEEEEe
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTED---PDCKIFLMS 790 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~---~~~~VlL~S 790 (885)
=...+.+.|..+.. .++ ++|||.....+++.+...|... +++ +.+.|. ..|.+++++|.+. ++..||| .
T Consensus 519 ~~~~~~~~i~~l~~-~~g-g~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g 591 (697)
T PRK11747 519 HTAEMAEFLPELLE-KHK-GSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-G 591 (697)
T ss_pred HHHHHHHHHHHHHh-cCC-CEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-E
Confidence 35567777777766 333 4777777778888888888643 333 444564 3577889777642 2344555 5
Q ss_pred cCCCccccccc--ccCEEEEeCCCC
Q 002744 791 LKAGGVALNLT--VASHVFLMDPWW 813 (885)
Q Consensus 791 t~agg~GlNL~--~A~~VI~~D~~w 813 (885)
+....+|+|++ .+..||+.-+|+
T Consensus 592 ~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 592 LQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred eccccccccCCCCceEEEEEEcCCC
Confidence 58999999998 467788887665
No 206
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.60 E-value=0.016 Score=58.60 Aligned_cols=46 Identities=28% Similarity=0.654 Sum_probs=39.3
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
...|.+|.+....|+++.|||.||.-|+..+.. ....||.|+....
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~--~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLG--TQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhc--CCCCCccccccHH
Confidence 456999999999999999999999999988764 4578999998543
No 207
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.016 Score=58.70 Aligned_cols=48 Identities=35% Similarity=0.703 Sum_probs=41.5
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
...|.+|.+..+.|..+.|||.||-.|+...........||.||.-..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 467999999999999999999999999998755566677999997543
No 208
>PHA02926 zinc finger-like protein; Provisional
Probab=94.53 E-value=0.022 Score=56.21 Aligned_cols=48 Identities=23% Similarity=0.704 Sum_probs=37.6
Q ss_pred hhhhccccCcCC---------CCccccCCchhhhhhhhhccccc----cCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLAD---------DPVVTNCGHAFCKACLFDSSASK----FVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~---------~~~~~~c~~~~c~~c~~~~~~~~----~~~~cp~c~~~~~ 675 (885)
..+|++|.+..- -+++..|+|.||..|+..+.... ....||.||..+.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 467999997631 25788999999999999988753 2456999998764
No 209
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.34 E-value=0.013 Score=42.68 Aligned_cols=37 Identities=43% Similarity=0.991 Sum_probs=20.1
Q ss_pred hccccCcCCC----CccccCCchhhhhhhhhccccc--cCCCCC
Q 002744 631 CGLCNDLADD----PVVTNCGHAFCKACLFDSSASK--FVAKCP 668 (885)
Q Consensus 631 ~~~~~~~~~~----~~~~~c~~~~c~~c~~~~~~~~--~~~~cp 668 (885)
|++|.+ ..+ |.++.|||.||.+|+....... ...+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 566666 333 7889999999999998866633 344554
No 210
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.89 E-value=0.3 Score=57.71 Aligned_cols=40 Identities=28% Similarity=0.252 Sum_probs=31.7
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCC
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQN 446 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N 446 (885)
.+++||||||-.+-.. ...+.+..++...|++|.|=|-|=
T Consensus 259 ~~dvlIiDEaSMvd~~--l~~~ll~al~~~~rlIlvGD~~QL 298 (586)
T TIGR01447 259 PLDVLVVDEASMVDLP--LMAKLLKALPPNTKLILLGDKNQL 298 (586)
T ss_pred cccEEEEcccccCCHH--HHHHHHHhcCCCCEEEEECChhhC
Confidence 5799999999998654 455566677888999999988763
No 211
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.86 E-value=0.45 Score=58.72 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=50.6
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
..||-|.+....+......+ ...++-..+|+|||+.-+.-++... . ..+++|.+|. .|
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~-~~~~~eA~tGtGKT~ayllp~l~~~--~------------------~~~vvI~t~T~~L 303 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDG-PASFIEAQTGIGKTYGYLLPLLAQS--D------------------QRQIIVSVPTKIL 303 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCC-CcEEEECCCCCcHHHHHHHHHHHhc--C------------------CCcEEEEeCcHHH
Confidence 57899998776666655543 3456677999999997543322211 0 1488999998 45
Q ss_pred HHHH-HHHHHHhcCCCCceEEEEeCCC
Q 002744 270 VTQW-VSEINRFTSVGSTKVLIYHGSN 295 (885)
Q Consensus 270 l~qW-~~Ei~k~~~~~~~~v~v~~g~~ 295 (885)
..|- .+++..+.....+++....|..
T Consensus 304 q~Ql~~~~i~~l~~~~~~~~~~~kg~~ 330 (820)
T PRK07246 304 QDQIMAEEVKAIQEVFHIDCHSLKGPQ 330 (820)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 5665 4555443221135555555543
No 212
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.80 E-value=0.17 Score=59.88 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=32.3
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCC
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQN 446 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N 446 (885)
.+++||||||-.+-. ......+..++...|++|-|=|-|-
T Consensus 265 ~~dvlIvDEaSMvd~--~lm~~ll~al~~~~rlIlvGD~~QL 304 (615)
T PRK10875 265 HLDVLVVDEASMVDL--PMMARLIDALPPHARVIFLGDRDQL 304 (615)
T ss_pred CCCeEEEChHhcccH--HHHHHHHHhcccCCEEEEecchhhc
Confidence 578999999999854 3456667778888999999988773
No 213
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.74 E-value=1 Score=50.63 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHHHh-cCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 713 STKIEALREEIRFMVE-RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~-~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
..+++.+.+.+--.+. .....++|||...---.-.|..+|...++.++.++-.++..+-.++-..|..+ ...+||.|-
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEh
Confidence 4567777764433333 45567999999877777778999999999999999999999999999999987 888999885
Q ss_pred CCCc-ccccccccCEEEEeCCCCCcchHHHHhhhhhhcCC----cccEEEEEEEeC
Q 002744 792 KAGG-VALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQ----YKPIRIVRFLIE 842 (885)
Q Consensus 792 ~agg-~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ----~k~V~VyrLv~~ 842 (885)
+.-= .=..+..+.+||||.||-+|.-|...+.-+..-.+ ..+.++.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 4331 23457789999999999999999888865554333 234555556654
No 214
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=93.61 E-value=0.05 Score=38.18 Aligned_cols=39 Identities=38% Similarity=0.961 Sum_probs=30.7
Q ss_pred hccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCC
Q 002744 631 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTC 670 (885)
Q Consensus 631 ~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c 670 (885)
|.+|.+....+.++.|+|.||..|+..+.. .....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHH-hCcCCCCCC
Confidence 567777778889999999999999988765 344567765
No 215
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.59 E-value=0.47 Score=57.78 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=45.3
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
..|-+-|++++..+... +-.+|--..|+|||.++-+++......+. ..++++++|...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-----~~~iitGgpGTGKTt~l~~i~~~~~~~~~-----------------~~~v~l~ApTg~ 379 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-----KVVILTGGPGTGKTTITRAIIELAEELGG-----------------LLPVGLAAPTGR 379 (720)
T ss_pred CCCCHHHHHHHHHHHhC-----CeEEEECCCCCCHHHHHHHHHHHHHHcCC-----------------CceEEEEeCchH
Confidence 46889999999887543 45788999999999887666554433211 136788899876
Q ss_pred HHHHHHH
Q 002744 270 VTQWVSE 276 (885)
Q Consensus 270 l~qW~~E 276 (885)
......|
T Consensus 380 AA~~L~e 386 (720)
T TIGR01448 380 AAKRLGE 386 (720)
T ss_pred HHHHHHH
Confidence 6554444
No 216
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=93.59 E-value=0.026 Score=58.60 Aligned_cols=45 Identities=33% Similarity=0.947 Sum_probs=38.7
Q ss_pred hhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 629 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
-.|.+|.+....|++++|+|.||.-|+..+.. ....||.|..++.
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~--~~p~CP~C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLS--YKPQCPTCCVTVT 68 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhc--cCCCCCceecccc
Confidence 35999999999999999999999999987654 4578999998654
No 217
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.44 E-value=0.34 Score=48.86 Aligned_cols=57 Identities=26% Similarity=0.220 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
+|-+-|++++..++.. ..+-.+|--..|+|||.....+.......+ ..+++++|.+-
T Consensus 1 ~L~~~Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-------------------~~v~~~apT~~ 57 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAG-------------------KRVIGLAPTNK 57 (196)
T ss_dssp -S-HHHHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT---------------------EEEEESSHH
T ss_pred CCCHHHHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCC-------------------CeEEEECCcHH
Confidence 3678999999998754 112356767899999987655544433211 48899999854
No 218
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.13 Score=59.87 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=40.2
Q ss_pred CCceEEEEecCCCcccccccccCEEE--------EeCC---------CC-CcchHHHHhhhhhhcCCcccEEEEEEEe
Q 002744 782 PDCKIFLMSLKAGGVALNLTVASHVF--------LMDP---------WW-NPAVEQQAQDRIHRIGQYKPIRIVRFLI 841 (885)
Q Consensus 782 ~~~~VlL~St~agg~GlNL~~A~~VI--------~~D~---------~w-np~~~~QaigR~~RiGQ~k~V~VyrLv~ 841 (885)
.+.+..+++|.++.+.|.++...+|| +||. .| +-+.-.||-|||+|+|- =|.|||+.
T Consensus 628 ~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp---GHcYRLYS 702 (1172)
T KOG0926|consen 628 KGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP---GHCYRLYS 702 (1172)
T ss_pred CCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC---Cceeehhh
Confidence 35677777888888888888877776 2332 23 34566788888888875 47788875
No 219
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.34 E-value=0.82 Score=55.58 Aligned_cols=38 Identities=21% Similarity=0.106 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHhhhcc----CCCceeeCCCCCChHHHH
Q 002744 191 PLLRYQKEWLAWALKQEESA----IRGGILADEMGMGKTIQA 228 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~----~~ggILADemGlGKTi~a 228 (885)
..||-|.+....+....... ....++=-.+|+|||+-=
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaY 66 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSY 66 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHH
Confidence 46899998777766655542 223455568999999974
No 220
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.31 E-value=0.58 Score=56.14 Aligned_cols=68 Identities=25% Similarity=0.243 Sum_probs=49.3
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-h
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
..|-.-|++|+..++..+... ++---+|+|||-+...++..+...+ +.+|+.+=. +
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~----LI~GMPGTGKTTtI~~LIkiL~~~g-------------------kkVLLtsyThs 724 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYA----LILGMPGTGKTTTISLLIKILVALG-------------------KKVLLTSYTHS 724 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchh----eeecCCCCCchhhHHHHHHHHHHcC-------------------CeEEEEehhhH
Confidence 478899999998877764433 3444589999999888887776533 688888876 4
Q ss_pred hHHHHHHHHHHh
Q 002744 269 AVTQWVSEINRF 280 (885)
Q Consensus 269 ll~qW~~Ei~k~ 280 (885)
.+.|----+..+
T Consensus 725 AVDNILiKL~~~ 736 (1100)
T KOG1805|consen 725 AVDNILIKLKGF 736 (1100)
T ss_pred HHHHHHHHHhcc
Confidence 567776666544
No 221
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.30 E-value=0.041 Score=58.24 Aligned_cols=49 Identities=27% Similarity=0.661 Sum_probs=43.5
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 676 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~ 676 (885)
.+.|.+|.+-..+.-+-.|||..|..|+..+..++....||.|+-.+..
T Consensus 369 FeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 369 FELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 4578889888888889999999999999999999989999999987654
No 222
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=93.23 E-value=0.056 Score=39.47 Aligned_cols=42 Identities=38% Similarity=0.917 Sum_probs=31.4
Q ss_pred hccccCcCCCCcc-ccCCchhhhhhhhhccccccCCCCCCCCCC
Q 002744 631 CGLCNDLADDPVV-TNCGHAFCKACLFDSSASKFVAKCPTCSIP 673 (885)
Q Consensus 631 ~~~~~~~~~~~~~-~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~ 673 (885)
|.+|.+....+.. ..|+|.||..|+..+... ....||.|+..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 6777776655544 449999999999887654 45679999864
No 223
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.15 E-value=0.37 Score=56.73 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=55.0
Q ss_pred CCCCCcccccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCc
Q 002744 181 TAEDPPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 260 (885)
Q Consensus 181 ~~~~p~~~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (885)
....|+.......|||.+-..-+-.. ..+...+.-..-+|||..++.++.+...... .|
T Consensus 6 ~s~~pG~w~~~~~Py~~eimd~~~~~---~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P------------------~~ 64 (557)
T PF05876_consen 6 SSAEPGPWRTDRTPYLREIMDALSDP---SVREVVVMKSAQVGKTELLLNWIGYSIDQDP------------------GP 64 (557)
T ss_pred CCCCCCCCCCCCChhHHHHHHhcCCc---CccEEEEEEcchhhHhHHHHhhceEEEEeCC------------------CC
Confidence 34457778889999998866554332 2456677778889999988888777765443 69
Q ss_pred EEEEech-hhHHHHHHH
Q 002744 261 TLVICPV-AAVTQWVSE 276 (885)
Q Consensus 261 ~LIV~P~-sll~qW~~E 276 (885)
+|+|.|. .....|.++
T Consensus 65 ~l~v~Pt~~~a~~~~~~ 81 (557)
T PF05876_consen 65 MLYVQPTDDAAKDFSKE 81 (557)
T ss_pred EEEEEEcHHHHHHHHHH
Confidence 9999997 667778754
No 224
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.94 E-value=0.46 Score=45.08 Aligned_cols=44 Identities=5% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHHHHHhhccCCC--ceEEEEecCC--Ccccccccc--cCEEEEeCCCC
Q 002744 769 PARDAAINRFTEDPD--CKIFLMSLKA--GGVALNLTV--ASHVFLMDPWW 813 (885)
Q Consensus 769 ~~R~~~i~~F~~~~~--~~VlL~St~a--gg~GlNL~~--A~~VI~~D~~w 813 (885)
.+..+++++|++..+ --||+ ++.. .+||+||+. +..||+.-.|+
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 31 GETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 355789999987422 13444 4444 799999993 56688877664
No 225
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=92.79 E-value=0.16 Score=42.10 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=37.4
Q ss_pred hhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 629 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
..|+++..+..+|+++.+||.|++.|+..+... ....||.|+.++..+
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSES 52 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGG
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcc
Confidence 469999999999999999999999999988876 677899998777643
No 226
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.56 E-value=0.088 Score=55.58 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=34.6
Q ss_pred hhhccccCc--CCCC---ccccCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 629 QVCGLCNDL--ADDP---VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 629 ~~~~~~~~~--~~~~---~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
..|++|... .+.. .+..|||.||..|+..... .....||.|+.++...
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 579999863 2222 3447999999999988643 3456899999877644
No 227
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=92.35 E-value=0.034 Score=40.90 Aligned_cols=40 Identities=28% Similarity=0.752 Sum_probs=30.5
Q ss_pred hhccccCcC---CCCccccCCchhhhhhhhhccccccCCCCCCCC
Q 002744 630 VCGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 671 (885)
Q Consensus 630 ~~~~~~~~~---~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~ 671 (885)
.|++|.+.. +..+.+.|+|.|+..|+..+.... ..||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC--CcCCccC
Confidence 467777654 456778899999999999988763 5999985
No 228
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=91.95 E-value=1.1 Score=53.15 Aligned_cols=83 Identities=27% Similarity=0.342 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHH
Q 002744 196 QKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWV 274 (885)
Q Consensus 196 Q~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~ 274 (885)
|.+.+.++....... ...++--.+|+|||+..+.-++...... ..+++||.+|. .|..|+.
T Consensus 2 Q~~~~~~i~~al~~~-~~lliEA~TGtGKTlAYLlpal~~~~~~-----------------~~~rvlIstpT~~Lq~Ql~ 63 (636)
T TIGR03117 2 QALFYLNCLTSLRQK-RIGMLEASTGVGKTLAMIMAALTMLKER-----------------PDQKIAIAVPTLALMGQLW 63 (636)
T ss_pred HHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHHHHhc-----------------cCceEEEECCcHHHHHHHH
Confidence 666666666655543 3566777999999998765443332111 01589999997 7789999
Q ss_pred HHHHHhc-C--CCCceEEEEeCCCc
Q 002744 275 SEINRFT-S--VGSTKVLIYHGSNR 296 (885)
Q Consensus 275 ~Ei~k~~-~--~~~~~v~v~~g~~~ 296 (885)
+++.... . ...+++....|..+
T Consensus 64 ~~l~~l~~~~l~~~i~~~~lkGr~n 88 (636)
T TIGR03117 64 SELERLTAEGLAGPVQAGFFPGSQE 88 (636)
T ss_pred HHHHHHHHhhcCCCeeEEEEECCcc
Confidence 9887654 1 12566666666543
No 229
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.37 E-value=0.33 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.130 Sum_probs=18.4
Q ss_pred CceeeCCCCCChHHHHHHHHHcc
Q 002744 213 GGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~ 235 (885)
+.+|.=+.|+|||..|-+++..+
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999987665544
No 230
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.12 Score=52.71 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=43.1
Q ss_pred hhhhhhhccccCcCCCCcccc-CCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 625 EHVQQVCGLCNDLADDPVVTN-CGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~-c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
.....+|+.|...+-.|-+.. |+|.+|..|+......+..-.||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 344568999999888876665 999999999999999888899999987654
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=90.79 E-value=1.6 Score=51.09 Aligned_cols=41 Identities=24% Similarity=0.212 Sum_probs=28.6
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
..|.|+|+..+..+... +-.++.-.=..|||..+.++++..
T Consensus 58 f~L~p~Q~~i~~~~~~~-----R~~ii~~aRq~GKStl~a~~al~~ 98 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKN-----RFNACNLSRQLGKTTVVAIFLLHY 98 (534)
T ss_pred cCCcHHHHHHHHHHhcC-----eEEEEEEcCcCChHHHHHHHHHHH
Confidence 56899999988776321 233666667799999987655443
No 232
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=89.39 E-value=0.77 Score=46.82 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
..+||-|.+.+..|... ....+.++=.-||-|||-.++=+++.....+. +=+-+|||.++
T Consensus 22 iliR~~Q~~ia~~mi~~--~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~------------------~LvrviVpk~L 81 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP--PSGKNSVMQLNMGEGKTSVIVPMLALALADGS------------------RLVRVIVPKAL 81 (229)
T ss_pred ceeeHHHHHHHHHHhCC--CCCCCeEeeecccCCccchHHHHHHHHHcCCC------------------cEEEEEcCHHH
Confidence 35899999988888763 23457899999999999887665555544322 35678999999
Q ss_pred HHHHHHHHHHhcCCC-CceEEE--EeCCCcccc--hh--------hhcCCCEEEecchhhHHh
Q 002744 270 VTQWVSEINRFTSVG-STKVLI--YHGSNRERS--AK--------QFSEFDFVITTYSIIEAD 319 (885)
Q Consensus 270 l~qW~~Ei~k~~~~~-~~~v~v--~~g~~~~~~--~~--------~l~~~dvvItty~~l~~~ 319 (885)
+.|-.+-+...+..- .-+|+. |.-...... .. -.....|++++.+.+..-
T Consensus 82 l~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 82 LEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred HHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 999999988765410 122332 222221111 00 113456888888876543
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=89.04 E-value=3.7 Score=42.21 Aligned_cols=24 Identities=33% Similarity=0.123 Sum_probs=19.1
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
...+|-=+.|+|||..+.+++...
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456788899999999987776544
No 234
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=88.88 E-value=0.11 Score=54.46 Aligned_cols=47 Identities=34% Similarity=0.824 Sum_probs=39.3
Q ss_pred hhhhhccccCcC-CCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 627 VQQVCGLCNDLA-DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 627 ~~~~~~~~~~~~-~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
....|.+|.... +...+..|.|.||+.|+..+... ...||.|...+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih 61 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIH 61 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceecc
Confidence 345799999766 55789999999999999998877 789999987654
No 235
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=88.78 E-value=0.62 Score=50.12 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=27.2
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCC
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQ 445 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~ 445 (885)
+=.+||+||||++--.. .--.+-+.-...+++|||-|.|
T Consensus 351 ~~~FiIIDEaQNLTphe--ikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 351 PDSFIIIDEAQNLTPHE--LKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccceEEEehhhccCHHH--HHHHHHhccCCCEEEEcCCHHH
Confidence 34579999999985432 1112334567889999999876
No 236
>PRK06526 transposase; Provisional
Probab=88.49 E-value=0.78 Score=48.22 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHccc
Q 002744 197 KEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 197 ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~ 236 (885)
+.+..|+.. ..+.+|.-..|+|||..+.++.....
T Consensus 89 l~~~~fi~~-----~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 89 LGTLDFVTG-----KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred HhcCchhhc-----CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 334466532 25778899999999999988876554
No 237
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.86 E-value=0.61 Score=53.02 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=46.4
Q ss_pred CCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec-hhhHHHHHHHHHHhcCCCCce-----EEEE
Q 002744 218 DEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAVTQWVSEINRFTSVGSTK-----VLIY 291 (885)
Q Consensus 218 DemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sll~qW~~Ei~k~~~~~~~~-----v~v~ 291 (885)
..+|+|||+++.++|++....+- +.+|..|- ++++.--..-+ +.+...+ ++-+
T Consensus 4 matgsgkt~~ma~lil~~y~kgy------------------r~flffvnq~nilekt~~nf---td~~s~kylf~e~i~~ 62 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKGY------------------RNFLFFVNQANILEKTKLNF---TDSVSSKYLFSENINI 62 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhch------------------hhEEEEecchhHHHHHHhhc---ccchhhhHhhhhhhhc
Confidence 56899999999999998876443 45666664 57765444333 2211111 1112
Q ss_pred eCCCcc-cchhhh----cCCCEEEecchhhHHhhh
Q 002744 292 HGSNRE-RSAKQF----SEFDFVITTYSIIEADYR 321 (885)
Q Consensus 292 ~g~~~~-~~~~~l----~~~dvvItty~~l~~~~~ 321 (885)
.+..-. +....+ ....|+.||.+.|-.++.
T Consensus 63 ~d~~i~ikkvn~fsehnd~iei~fttiq~l~~d~~ 97 (812)
T COG3421 63 NDENIEIKKVNNFSEHNDAIEIYFTTIQGLFSDFT 97 (812)
T ss_pred CCceeeeeeecccCccCCceEEEEeehHHHHHHHH
Confidence 222111 111112 234688899988877753
No 238
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.74 E-value=0.34 Score=50.10 Aligned_cols=52 Identities=25% Similarity=0.595 Sum_probs=41.9
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCccccccc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTA 680 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~ 680 (885)
..+|.+|......|+.+.|.|.||.-|+...... ....|++|+.++..+...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCcchhc
Confidence 4579999999999999999999999999654332 245699999998765443
No 239
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.69 E-value=0.54 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=19.6
Q ss_pred CceeeCCCCCChHHHHHHHHHcccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~ 237 (885)
+.+|.-++|+|||..|-+++..++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5678889999999999777665543
No 240
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=0.25 Score=54.08 Aligned_cols=43 Identities=37% Similarity=0.886 Sum_probs=38.7
Q ss_pred hhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCC
Q 002744 627 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCS 671 (885)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~ 671 (885)
....|++|.+....|.++.|+|.||..|+..... ....||.|+
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccC
Confidence 3557999999999999999999999999988777 668999999
No 241
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=87.45 E-value=4.4 Score=37.69 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
+..++.-+.|.|||..+-.++...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 467888999999998776665444
No 242
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.34 E-value=0.43 Score=47.09 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=13.0
Q ss_pred hcCCCEEEecchhhHHh
Q 002744 303 FSEFDFVITTYSIIEAD 319 (885)
Q Consensus 303 l~~~dvvItty~~l~~~ 319 (885)
...+||||++|..|...
T Consensus 117 ~~~adivi~~y~yl~~~ 133 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDP 133 (174)
T ss_dssp GGG-SEEEEETHHHHSH
T ss_pred cccCCEEEeCHHHHhhH
Confidence 45689999999988664
No 243
>PRK08084 DNA replication initiation factor; Provisional
Probab=85.95 E-value=4.5 Score=42.06 Aligned_cols=23 Identities=17% Similarity=-0.018 Sum_probs=17.7
Q ss_pred CCceeeCCCCCChHHHHHHHHHc
Q 002744 212 RGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~ 234 (885)
...+|.=+.|+|||-.+.++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45688889999999877665543
No 244
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=0.19 Score=37.52 Aligned_cols=46 Identities=30% Similarity=0.803 Sum_probs=38.5
Q ss_pred hhhccccCcCCCCccccCCch-hhhhhhhhccccccCCCCCCCCCCcc
Q 002744 629 QVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~-~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
.+|.+|.+.+-+.++..|||. .|..|-...-.. ....||.|+.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHH
Confidence 579999999999999999997 899998765443 6788999998864
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=85.67 E-value=6.9 Score=42.76 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=33.8
Q ss_pred eecEEEEecccccCCCCc-HHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 405 KWERIILDEAHFIKDRRS-NTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s-~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
.+.+||+||+|.+-...- ...+.+.......++++++++...-+..|-+-...+.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 478999999999854321 1222232234556788888876655555666554443
No 246
>CHL00181 cbbX CbbX; Provisional
Probab=85.21 E-value=1 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=18.8
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
.+|.=++|+|||..|-+++....
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47889999999999987766544
No 247
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=85.07 E-value=6.8 Score=48.82 Aligned_cols=84 Identities=17% Similarity=0.263 Sum_probs=56.8
Q ss_pred CCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhH-----HHHHHHHHHhcCCCC
Q 002744 211 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV-----TQWVSEINRFTSVGS 285 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll-----~qW~~Ei~k~~~~~~ 285 (885)
..+.+++...|+|||+.|=-.++. . . ..+.+.-++|...+ .-|.+-|.+.. .
T Consensus 1159 nd~v~vga~~gsgkt~~ae~a~l~-~--~-----------------~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~---G 1215 (1674)
T KOG0951|consen 1159 NDNVLVGAPNGSGKTACAELALLR-P--D-----------------TIGRAVYIAPLEEIADEQYRDWEKKFSKLL---G 1215 (1674)
T ss_pred cceEEEecCCCCchhHHHHHHhcC-C--c-----------------cceEEEEecchHHHHHHHHHHHHHhhcccc---C
Confidence 467899999999999988333222 1 1 23678899998654 55777776653 4
Q ss_pred ceEEEEeCCCcccchhhhcCCCEEEecchhhHH
Q 002744 286 TKVLIYHGSNRERSAKQFSEFDFVITTYSIIEA 318 (885)
Q Consensus 286 ~~v~v~~g~~~~~~~~~l~~~dvvItty~~l~~ 318 (885)
..+....|. .......+...+|+|+|.+....
T Consensus 1216 ~~~~~l~ge-~s~~lkl~~~~~vii~tpe~~d~ 1247 (1674)
T KOG0951|consen 1216 LRIVKLTGE-TSLDLKLLQKGQVIISTPEQWDL 1247 (1674)
T ss_pred ceEEecCCc-cccchHHhhhcceEEechhHHHH
Confidence 555555554 33445566788999999998644
No 248
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=0.39 Score=51.25 Aligned_cols=49 Identities=27% Similarity=0.627 Sum_probs=41.8
Q ss_pred hhhhhhccccCcCCCCccccCCch-hhhhhhhhccccccCCCCCCCCCCccc
Q 002744 626 HVQQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPLTV 676 (885)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~c~~~-~c~~c~~~~~~~~~~~~cp~c~~~~~~ 676 (885)
+....|.+|.....+.++++|-|. .|..|..... .....||.||.++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr--~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR--YQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHH--HhhcCCCccccchHh
Confidence 446789999999999999999997 9999986655 556789999998763
No 249
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.59 E-value=7.4 Score=43.54 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=35.1
Q ss_pred eecEEEEecccccCCCCc---HHHHHHHhccc--ccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 405 KWERIILDEAHFIKDRRS---NTAKAVLALES--SYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s---~~~~~~~~l~~--~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
..++||||++.+.....- .....+..... ..-++|+||-=++.+.+++.-+..++
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~ 313 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFS 313 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 468999999988754322 22222222322 34588999988888887777665544
No 250
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=84.33 E-value=0.63 Score=35.41 Aligned_cols=45 Identities=31% Similarity=0.805 Sum_probs=35.4
Q ss_pred hhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 629 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
+.|-.|........++.|+|.+|..|. .......||.|..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f----~~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLICDNCF----PGERYNGCPFCGTPFEFD 52 (55)
T ss_pred eeEEEccccccccccccccceeecccc----ChhhccCCCCCCCcccCC
Confidence 456667777778899999999999987 334567899999988643
No 251
>PRK08116 hypothetical protein; Validated
Probab=84.21 E-value=7.7 Score=41.17 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCceeeCCCCCChHHHHHHHHHcccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~~ 237 (885)
.|.+|.-++|+|||..+.+++..+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~ 140 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE 140 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999888776653
No 252
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=83.71 E-value=0.41 Score=46.01 Aligned_cols=47 Identities=34% Similarity=0.868 Sum_probs=36.1
Q ss_pred hhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCC
Q 002744 625 EHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIP 673 (885)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~ 673 (885)
+.+-..|.+|....+.|+++.|||.||..|.+..- .....|-.|...
T Consensus 193 e~IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y--~kg~~C~~Cgk~ 239 (259)
T COG5152 193 EKIPFLCGICKKDYESPVVTECGHSFCSLCAIRKY--QKGDECGVCGKA 239 (259)
T ss_pred CCCceeehhchhhccchhhhhcchhHHHHHHHHHh--ccCCcceecchh
Confidence 44556899999999999999999999999987633 234456666543
No 253
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.36 E-value=6.2 Score=47.42 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=30.4
Q ss_pred eecEEEEecccccCCCCc-HHHHHHHhcccccEEEEeCcCCCCchhhHHHHH
Q 002744 405 KWERIILDEAHFIKDRRS-NTAKAVLALESSYKWALSGTPLQNRVGELYSLV 455 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s-~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll 455 (885)
+|.++||||+|.+.+... .+.+.+.......+++|+.|=.+.-+.-|.|-+
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRC 170 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRC 170 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhhe
Confidence 578999999999965331 122333333456678888876554444444433
No 254
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=83.06 E-value=4.3 Score=37.34 Aligned_cols=24 Identities=29% Similarity=0.163 Sum_probs=19.5
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
..+|.=.+|+|||..+..++....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 457788899999999988876654
No 255
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=82.46 E-value=3.2 Score=44.00 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 195 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 195 yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
.+.+++..+......+.+-.+|.=+.|+|||..+-.++...
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 34455555544333332235788999999998887665443
No 256
>PF13245 AAA_19: Part of AAA domain
Probab=82.24 E-value=3.1 Score=34.69 Aligned_cols=49 Identities=22% Similarity=0.231 Sum_probs=32.8
Q ss_pred ceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh-HHHHHHHH
Q 002744 214 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-VTQWVSEI 277 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl-l~qW~~Ei 277 (885)
.++--..|+|||-+++..+..+...... ..+++|||+|..- +.+-.+.+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~---------------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARAD---------------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcC---------------CCCeEEEECCCHHHHHHHHHHH
Confidence 4557899999999888887777632111 0268999999844 44444444
No 257
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=80.62 E-value=2.4 Score=51.63 Aligned_cols=88 Identities=23% Similarity=0.212 Sum_probs=58.8
Q ss_pred CceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHHHHHHHhcCCCCceEEEE
Q 002744 213 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFTSVGSTKVLIY 291 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~Ei~k~~~~~~~~v~v~ 291 (885)
+.++.+..|.|||+.+-..+....... +.+.+.+|+|. +++.-=.+.+.+-...+.+++.-.
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~-----------------p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYY-----------------PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccC-----------------CCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 568999999999998743333332221 22688999995 676444444443333337788888
Q ss_pred eCCCcccchhhhcCCCEEEecchhhHH
Q 002744 292 HGSNRERSAKQFSEFDFVITTYSIIEA 318 (885)
Q Consensus 292 ~g~~~~~~~~~l~~~dvvItty~~l~~ 318 (885)
.|..... .....+.+++|||.+....
T Consensus 1008 tgd~~pd-~~~v~~~~~~ittpek~dg 1033 (1230)
T KOG0952|consen 1008 TGDVTPD-VKAVREADIVITTPEKWDG 1033 (1230)
T ss_pred cCccCCC-hhheecCceEEcccccccC
Confidence 8776554 5567788999999998543
No 258
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.54 E-value=11 Score=43.36 Aligned_cols=24 Identities=29% Similarity=0.093 Sum_probs=18.0
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
.+.+|.-++|+|||-.+-++....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l 165 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYI 165 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999998776665433
No 259
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.03 E-value=0.48 Score=50.18 Aligned_cols=48 Identities=31% Similarity=0.730 Sum_probs=36.7
Q ss_pred hhhhhccccCcCC-CCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 627 VQQVCGLCNDLAD-DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 627 ~~~~~~~~~~~~~-~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
....|++|.++.. ......|+|.||..|+...... ....||.|+..+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 3557999998764 4557789999999999775543 4568999998764
No 260
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.88 E-value=9.1 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.2
Q ss_pred CCc-eeeCCCCCChHHHHHHHHHccc
Q 002744 212 RGG-ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 212 ~gg-ILADemGlGKTi~aiali~~~~ 236 (885)
... |+.-+.|+|||..+-.++..+.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 344 7899999999999988876654
No 261
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.08 E-value=2.1 Score=45.01 Aligned_cols=54 Identities=24% Similarity=0.558 Sum_probs=46.2
Q ss_pred hhhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 622 ADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
++.++....|.+|..-..-..+++|+|..|.-|-+...+-.....|+.|+....
T Consensus 55 ddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 55 DDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 345556678999998877778999999999999999999889999999998754
No 262
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.05 E-value=11 Score=43.04 Aligned_cols=23 Identities=30% Similarity=0.210 Sum_probs=19.3
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
-|+.-+.|.|||..|..++..+.
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 48999999999999988876653
No 263
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.77 E-value=7.9 Score=42.40 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHccc
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~ 236 (885)
.++|+|......++.+ .+..+.-++.-+.|.|||..|..++..+.
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 3588888887777765 33333456789999999999988877665
No 264
>PRK08727 hypothetical protein; Validated
Probab=78.68 E-value=11 Score=39.19 Aligned_cols=23 Identities=39% Similarity=0.317 Sum_probs=17.9
Q ss_pred CceeeCCCCCChHHHHHHHHHcc
Q 002744 213 GGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~ 235 (885)
..+|.-..|+|||-.+.++....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999998777765543
No 265
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=78.58 E-value=22 Score=38.67 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=18.6
Q ss_pred CceeeCCCCCChHHHHHHHHHcc
Q 002744 213 GGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~ 235 (885)
..+|.=+.|+|||..+-.++...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999887775543
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=78.53 E-value=14 Score=39.53 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=27.5
Q ss_pred CccceecEEEEecccccCCCC-cHH---HHHHHhcccccE--EEEeCcC
Q 002744 401 LHSLKWERIILDEAHFIKDRR-SNT---AKAVLALESSYK--WALSGTP 443 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~-s~~---~~~~~~l~~~~r--~lLTGTP 443 (885)
|..++..++||||.|++...+ .+. ..+++.|....+ +++.||+
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 556678899999999974433 332 334444533333 6778886
No 267
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=78.13 E-value=16 Score=42.03 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=19.7
Q ss_pred CCceeeCCCCCChHHHHHHHHHccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~ 236 (885)
...+|--..|+|||..+-++.....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~ 173 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYIL 173 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999998877765554
No 268
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=77.84 E-value=1.5 Score=36.25 Aligned_cols=40 Identities=33% Similarity=0.800 Sum_probs=29.0
Q ss_pred hhccccCcCCCC-------------ccccCCchhhhhhhhhccccccCCCCCCCC
Q 002744 630 VCGLCNDLADDP-------------VVTNCGHAFCKACLFDSSASKFVAKCPTCS 671 (885)
Q Consensus 630 ~~~~~~~~~~~~-------------~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~ 671 (885)
.|.+|.....++ .+..|+|.|...|+..+..... .||.|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS--B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC--cCCCCC
Confidence 478887665322 3457999999999998886544 999996
No 269
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=77.36 E-value=12 Score=45.72 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=67.3
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHH----HHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLI----NYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 786 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L----~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~V 786 (885)
..|+|.....-.+...+. .+.+++|.+.....+..+ ..++...|+++..++|+++..+|.+.+....++ .+.|
T Consensus 291 TGSGKT~va~~~il~~~~--~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~I 367 (681)
T PRK10917 291 VGSGKTVVAALAALAAIE--AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADI 367 (681)
T ss_pred CCCcHHHHHHHHHHHHHH--cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCE
Confidence 357887765544433333 357899999987665544 455555689999999999999999999998876 6888
Q ss_pred EEEecCCCcccccccccCEEEE
Q 002744 787 FLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 787 lL~St~agg~GlNL~~A~~VI~ 808 (885)
++.+.......+.+.....||+
T Consensus 368 vVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 368 VIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred EEchHHHhcccchhcccceEEE
Confidence 8876555555566666655554
No 270
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=76.93 E-value=1.1 Score=34.90 Aligned_cols=43 Identities=26% Similarity=0.578 Sum_probs=30.8
Q ss_pred hhhhhccccCcCCCCccc-cCCchhhhhhhhhccccccCCCCCC
Q 002744 627 VQQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPT 669 (885)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~-~c~~~~c~~c~~~~~~~~~~~~cp~ 669 (885)
....|++...+..+|+.. .|+|.|.+..+.++........||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 345699999999999886 8999999999999997777888887
No 271
>PRK06893 DNA replication initiation factor; Validated
Probab=76.49 E-value=25 Score=36.32 Aligned_cols=22 Identities=14% Similarity=-0.123 Sum_probs=17.2
Q ss_pred ceeeCCCCCChHHHHHHHHHcc
Q 002744 214 GILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~ 235 (885)
.+|.-..|+|||-.+.++....
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4788999999998876665543
No 272
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=76.36 E-value=18 Score=41.12 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=34.0
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhc------ccccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLAL------ESSYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l------~~~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
.+++||||-+-+...... ....+..+ .....++|++|+-++.+.+++..+..++
T Consensus 299 ~~DlVlIDt~G~~~~d~~-~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~ 358 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKR-LIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLP 358 (424)
T ss_pred CCCEEEEeCCCCCCCCHH-HHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 368999999876543322 22222222 2244688999988777777777776554
No 273
>PRK08181 transposase; Validated
Probab=76.26 E-value=14 Score=39.09 Aligned_cols=44 Identities=23% Similarity=-0.028 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHccc
Q 002744 192 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~ 236 (885)
+-+-|..++..+.. +.....+.+|.-..|+|||-.+.++.....
T Consensus 88 ~~~~~~~~L~~~~~-~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 88 VSKAQVMAIAAGDS-WLAKGANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred CCHHHHHHHHHHHH-HHhcCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 34455555543311 111235789999999999999888765544
No 274
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.02 E-value=1.5 Score=48.65 Aligned_cols=47 Identities=36% Similarity=0.763 Sum_probs=40.0
Q ss_pred hhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 627 VQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
....|.+|......|+.++|||.+|..|+.. .......||.|+.++.
T Consensus 83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r--~ld~~~~cp~Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSRALYPPVVTPCGHSFCLECLDR--SLDQETECPLCRDELV 129 (398)
T ss_pred chhhhhhhHhhcCCCccccccccccHHHHHH--HhccCCCCcccccccc
Confidence 3457999999999999999999999999877 3447789999998765
No 275
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=75.93 E-value=10 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=17.8
Q ss_pred CCccceecEEEEecccccCCC
Q 002744 400 PLHSLKWERIILDEAHFIKDR 420 (885)
Q Consensus 400 ~l~~~~w~~vIlDEaH~ikn~ 420 (885)
.+....++++||||||.|+..
T Consensus 347 siRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 347 GIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred CccCCcccEEEEechhhCCHH
Confidence 366668999999999999875
No 276
>PRK14974 cell division protein FtsY; Provisional
Probab=75.87 E-value=18 Score=39.71 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=17.6
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
.++.-..|.|||.++..++..+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 45677999999998877766554
No 277
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.64 E-value=21 Score=39.01 Aligned_cols=47 Identities=11% Similarity=0.060 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHHHH---hhhccCCCceeeCCCCCChHHHHHHHHHcccc
Q 002744 191 PLLRYQKEWLAWALK---QEESAIRGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~---~~~~~~~ggILADemGlGKTi~aiali~~~~~ 237 (885)
..+.++..++..+.. .......+.+|.-++|+|||..+.+++.....
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 456666665554332 12223367788889999999998888766643
No 278
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=75.59 E-value=18 Score=41.07 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=18.8
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
..+|--..|+|||..+-++.....
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~ 161 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEIL 161 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999998877765543
No 279
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.13 E-value=2.8 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=20.1
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
..++.-+.|+|||..+.+++....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578899999999999988876554
No 280
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=1.5 Score=45.52 Aligned_cols=51 Identities=35% Similarity=0.682 Sum_probs=39.2
Q ss_pred hhhhhhhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 623 DAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
+...+-..|.+|......|+++.|+|.||..|...... ....|..|.....
T Consensus 236 D~~~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~q--k~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 236 DIELLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQ--KGEKCYVCSQQTH 286 (313)
T ss_pred CcccCCccccccccccccchhhcCCceeehhhhccccc--cCCcceecccccc
Confidence 34444557999999999999999999999999865432 2357888876543
No 281
>PRK04195 replication factor C large subunit; Provisional
Probab=74.26 E-value=26 Score=40.74 Aligned_cols=24 Identities=33% Similarity=0.266 Sum_probs=19.6
Q ss_pred CCCceeeCCCCCChHHHHHHHHHc
Q 002744 211 IRGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~ 234 (885)
.+..+|.-+.|+|||..+-+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999988777554
No 282
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=73.85 E-value=3.1 Score=35.06 Aligned_cols=47 Identities=30% Similarity=0.691 Sum_probs=35.4
Q ss_pred hhhccccCcCCC-C-ccccCCchhhhhhhhhccccc-cCCCCCCCCCCcc
Q 002744 629 QVCGLCNDLADD-P-VVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPLT 675 (885)
Q Consensus 629 ~~~~~~~~~~~~-~-~~~~c~~~~c~~c~~~~~~~~-~~~~cp~c~~~~~ 675 (885)
..|+.|..+.++ | ++-.|+|.|-.-|+.....+. ....||+||.+..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 345556555544 3 456799999999999988864 4689999998765
No 283
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=73.75 E-value=7.8 Score=42.85 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhcc--CCCceeeCCCCCChHHHHHHHHHcccc
Q 002744 198 EWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 198 ~~v~~l~~~~~~~--~~ggILADemGlGKTi~aiali~~~~~ 237 (885)
.+...+.....++ .+.-++.-+.|+|||..+..++..+.-
T Consensus 30 ~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 30 EAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3444544444332 124678999999999999888776653
No 284
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.47 E-value=44 Score=41.16 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHhhhc--cCCCce-eeCCCCCChHHHHHHHHHcc
Q 002744 192 LLRYQKEWLAWALKQEES--AIRGGI-LADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~--~~~ggI-LADemGlGKTi~aiali~~~ 235 (885)
-|+-|.+.+...+...-. ...++| |.-.+|+|||.++-.++..+
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 477777777555543322 222333 79999999999998776554
No 285
>PRK05642 DNA replication initiation factor; Validated
Probab=73.46 E-value=16 Score=37.97 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=23.1
Q ss_pred ecEEEEecccccCCCCc---HHHHHHHhc-ccccEEEEeCc
Q 002744 406 WERIILDEAHFIKDRRS---NTAKAVLAL-ESSYKWALSGT 442 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s---~~~~~~~~l-~~~~r~lLTGT 442 (885)
.++||+|+.|.+.+... ..+..+..+ ....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 36899999999866532 123333333 23566888886
No 286
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=73.24 E-value=6.2 Score=46.14 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=52.4
Q ss_pred ccHHHHHHHHHHHHHhhh-------ccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEE
Q 002744 191 PLLRYQKEWLAWALKQEE-------SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLV 263 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~-------~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LI 263 (885)
...+..++.+.|.+.+.. ...+|.+|.-..|+|||+.|-++..... .+++-
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~----------------------~~fi~ 306 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR----------------------SRFIS 306 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC----------------------CeEEE
Confidence 356677788888776655 3445889999999999999988876432 35566
Q ss_pred EechhhHHHHHHHHHHhc
Q 002744 264 ICPVAAVTQWVSEINRFT 281 (885)
Q Consensus 264 V~P~sll~qW~~Ei~k~~ 281 (885)
|-...++..|.-|..+..
T Consensus 307 v~~~~l~sk~vGesek~i 324 (494)
T COG0464 307 VKGSELLSKWVGESEKNI 324 (494)
T ss_pred eeCHHHhccccchHHHHH
Confidence 665699999999998774
No 287
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.13 E-value=6.4 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.9
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
-++.-+.|+|||..|-+++..+.
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHhc
Confidence 37999999999999988776553
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=72.96 E-value=24 Score=38.34 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=24.0
Q ss_pred ecEEEEecccccCCCCc--HHHHHHHhcccccEEEEeCcCCC
Q 002744 406 WERIILDEAHFIKDRRS--NTAKAVLALESSYKWALSGTPLQ 445 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s--~~~~~~~~l~~~~r~lLTGTPi~ 445 (885)
..+|||||+|.+..... .....+.......++++|++...
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKN 142 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChh
Confidence 46899999999833221 12222333355667888887544
No 289
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.77 E-value=1.3 Score=52.11 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=41.3
Q ss_pred hhhhhhhccccCcCCC-----CccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 625 EHVQQVCGLCNDLADD-----PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 625 ~~~~~~~~~~~~~~~~-----~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
......|.+|.+.... +-.+.|+|.||..|+..+... ...||.|+..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhh
Confidence 3446789999988877 789999999999999988776 789999999443
No 290
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=72.56 E-value=2 Score=44.07 Aligned_cols=44 Identities=39% Similarity=0.830 Sum_probs=34.7
Q ss_pred hhhccccCcCCCCccc-cCCchhhhhhhhhccccccCCCCCCCCCC
Q 002744 629 QVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIP 673 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~-~c~~~~c~~c~~~~~~~~~~~~cp~c~~~ 673 (885)
..|++|..+...++.+ .|+|.||..|+..... +....||.|...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~-dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALL-DSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhh-hccccCCCcccc
Confidence 4799999999998888 6789999999965332 335689999764
No 291
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=72.54 E-value=8.1 Score=46.97 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechh-
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVA- 268 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~s- 268 (885)
..+|+.|.+.+.-+......+ +.+++=-.+|+|||+..|+.++....... ++++|.++..
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~-~~~~iEapTGtGKTl~yL~~al~~~~~~~------------------~~viist~t~~ 74 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGG-EGLLIEAPTGTGKTLAYLLPALAYAREEG------------------KKVIISTRTKA 74 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CcEEEECCCCccHHHHHHHHHHHHHHHcC------------------CcEEEECCCHH
Confidence 357999999887776444433 46899999999999998877766654322 3556666654
Q ss_pred hHHHHHHHHHHh
Q 002744 269 AVTQWVSEINRF 280 (885)
Q Consensus 269 ll~qW~~Ei~k~ 280 (885)
+..|-..+...+
T Consensus 75 lq~q~~~~~~~~ 86 (654)
T COG1199 75 LQEQLLEEDLPI 86 (654)
T ss_pred HHHHHHHhhcch
Confidence 567766665543
No 292
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=71.71 E-value=14 Score=36.42 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=20.2
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhc-ccccEEEEeC
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSG 441 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l-~~~~r~lLTG 441 (885)
+++|++||||.+. .+ +...+..+ .....+.+.|
T Consensus 77 ~dvI~IDEaQFf~-~~--i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 77 YDVIGIDEAQFFD-EQ--IVQLVEILANKGIPVICAG 110 (176)
T ss_dssp CSEEEESSGGGST-TT--HHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEechHhhH-HH--HHHHHHHHHhCCCeEEEEe
Confidence 7899999999997 32 34444444 2344444444
No 293
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=71.65 E-value=29 Score=41.06 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=18.3
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
..+|.-..|+|||-.+-++.....
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 467888999999988777665543
No 294
>PRK05580 primosome assembly protein PriA; Validated
Probab=71.08 E-value=33 Score=41.76 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=70.6
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 789 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~ 789 (885)
..|+|.......+...+.. +.++||.+.....+..+.+.|.. .|.....++|+++..+|.+...+...+ ...|++.
T Consensus 171 TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEe
Confidence 4588999888888776654 57899999999888888877765 478899999999999988887777765 6777775
Q ss_pred ecCCCcccccccccCEEEEeCC
Q 002744 790 SLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 790 St~agg~GlNL~~A~~VI~~D~ 811 (885)
+..+. =+.+.....||+=+-
T Consensus 248 Trsal--~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL--FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh--cccccCCCEEEEECC
Confidence 53222 234555566665553
No 295
>PRK11054 helD DNA helicase IV; Provisional
Probab=70.87 E-value=7.2 Score=47.21 Aligned_cols=70 Identities=16% Similarity=0.012 Sum_probs=47.5
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
.+|-+.|.+++.... ...++--..|+|||.++++-+.++...... ....+|+++...-
T Consensus 195 ~~L~~~Q~~av~~~~-------~~~lV~agaGSGKT~vl~~r~ayLl~~~~~---------------~~~~IL~ltft~~ 252 (684)
T PRK11054 195 SPLNPSQARAVVNGE-------DSLLVLAGAGSGKTSVLVARAGWLLARGQA---------------QPEQILLLAFGRQ 252 (684)
T ss_pred CCCCHHHHHHHhCCC-------CCeEEEEeCCCCHHHHHHHHHHHHHHhCCC---------------CHHHeEEEeccHH
Confidence 458899999886421 234555569999999998888776643322 1258899999877
Q ss_pred HHHHHHH-HHHhc
Q 002744 270 VTQWVSE-INRFT 281 (885)
Q Consensus 270 l~qW~~E-i~k~~ 281 (885)
..+..+| |...+
T Consensus 253 AA~em~eRL~~~l 265 (684)
T PRK11054 253 AAEEMDERIRERL 265 (684)
T ss_pred HHHHHHHHHHHhc
Confidence 6666555 55443
No 296
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.47 E-value=25 Score=41.04 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=68.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh-CCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 789 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~ 789 (885)
..|+|....+..+...++. +.++||.+........+.+.|+. .|.++..++|.++..+|.+...+-.++ +..|++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEEC
Confidence 4688999888888877654 56899999998888777777765 478889999999999988877766655 6677765
Q ss_pred ecCCCcccccccccCEEEEeC
Q 002744 790 SLKAGGVALNLTVASHVFLMD 810 (885)
Q Consensus 790 St~agg~GlNL~~A~~VI~~D 810 (885)
+..+. =+-+.....||+=+
T Consensus 83 Trsal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH--cCcccCCCEEEEEC
Confidence 53322 12344555566544
No 297
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.42 E-value=7.5 Score=46.12 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=19.5
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
.-|+.-..|.|||..|.+++..+.
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 348999999999999988776653
No 298
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=70.35 E-value=26 Score=39.10 Aligned_cols=45 Identities=11% Similarity=0.128 Sum_probs=29.4
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHH
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEIN 278 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~ 278 (885)
+|.-++|.|||..++.++...... .+++|.|.-.--..|......
T Consensus 86 LI~G~pG~GKStLllq~a~~~a~~-------------------g~~VlYvs~EEs~~qi~~Ra~ 130 (372)
T cd01121 86 LIGGDPGIGKSTLLLQVAARLAKR-------------------GGKVLYVSGEESPEQIKLRAD 130 (372)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhc-------------------CCeEEEEECCcCHHHHHHHHH
Confidence 678899999999988776654321 146777765544455444333
No 299
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=70.26 E-value=20 Score=44.06 Aligned_cols=58 Identities=14% Similarity=-0.047 Sum_probs=40.4
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA 269 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl 269 (885)
..|-+-|++++.-++.. .+-.+|--..|+|||.++-+++......+ ..+++++|...
T Consensus 351 ~~Ls~~Q~~Av~~i~~s----~~~~il~G~aGTGKTtll~~i~~~~~~~g-------------------~~V~~~ApTg~ 407 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS----GDIAVVVGRAGTGKSTMLKAAREAWEAAG-------------------YRVIGAALSGK 407 (744)
T ss_pred CCCCHHHHHHHHHHhcC----CCEEEEEecCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEeCcHH
Confidence 45789999999876542 13468889999999988766554433211 46788899865
Q ss_pred H
Q 002744 270 V 270 (885)
Q Consensus 270 l 270 (885)
.
T Consensus 408 A 408 (744)
T TIGR02768 408 A 408 (744)
T ss_pred H
Confidence 4
No 300
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.84 E-value=40 Score=39.43 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.5
Q ss_pred eeeCCCCCChHHHHHHHHHccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~ 236 (885)
|+.-..|+|||..|-.++..+.
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 42 LFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 7889999999999988776653
No 301
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=69.44 E-value=22 Score=38.76 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=34.8
Q ss_pred cccHHHHHHHHHHHHHhhhcc--CCCceeeCCCCCChHHHHHHHHHccc
Q 002744 190 TPLLRYQKEWLAWALKQEESA--IRGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~--~~ggILADemGlGKTi~aiali~~~~ 236 (885)
..++|+|......+.....++ .+.-++.-..|+||+..|.+++..+.
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHh
Confidence 468999988877766654432 22456789999999999988877664
No 302
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=69.27 E-value=31 Score=30.17 Aligned_cols=58 Identities=9% Similarity=-0.029 Sum_probs=40.8
Q ss_pred CccEEEEccC------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEE
Q 002744 732 SAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 789 (885)
Q Consensus 732 ~~KvIIFsq~------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~ 789 (885)
.++|+||+.. =.....+..+|...|++|..++=......|+.+........-+.||+-
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 4699999753 345677889999999999888765556666666655544444566663
No 303
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.93 E-value=21 Score=42.38 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=30.5
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhc---ccccEEEEeCcCCCCchhhHHHHHHHh
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPLQNRVGELYSLVRFL 458 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l---~~~~r~lLTGTPi~N~l~eL~~ll~fL 458 (885)
+|.++||||+|.+.... ....++.| ....+++|..|=.+.-+.-|.|-+..+
T Consensus 124 r~KViIIDEah~Ls~~A--aNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f 178 (700)
T PRK12323 124 RFKVYMIDEVHMLTNHA--FNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQF 178 (700)
T ss_pred CceEEEEEChHhcCHHH--HHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhc
Confidence 57899999999995432 23334444 344567777764444444444444433
No 304
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=68.92 E-value=3.1 Score=46.71 Aligned_cols=48 Identities=42% Similarity=0.964 Sum_probs=41.3
Q ss_pred hhhhccccCcCCCCccc-cCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 628 QQVCGLCNDLADDPVVT-NCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~-~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
...|++|..+..+|+.+ .|+|.||..|+...... ...||.|+......
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchh
Confidence 45799999999999995 99999999999888777 88999998776543
No 305
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=68.83 E-value=51 Score=31.94 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhcc-CCC-ceeeCCCCCChHHHHHHHHHcccc
Q 002744 196 QKEWLAWALKQEESA-IRG-GILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 196 Q~~~v~~l~~~~~~~-~~g-gILADemGlGKTi~aiali~~~~~ 237 (885)
|.+.+..+.....+. ... -|+.-+.|.||+-.|.+++....-
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~ 45 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLC 45 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 444444444444332 223 377888999999999999887654
No 306
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=68.33 E-value=2.1 Score=53.02 Aligned_cols=143 Identities=33% Similarity=0.456 Sum_probs=126.2
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
++|+..+...+..+.-+..-+|||+|+|+...+++++..+..++|++.+..+ + ++-...+..|. ++.||++-++
T Consensus 1202 g~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk---~I~clll~~~ 1275 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFK---SIDCLLLFVS 1275 (1394)
T ss_pred ccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhcc---cceEEEEEec
Confidence 5677777777777655666789999999999999999999999999876555 3 45567888886 4999999999
Q ss_pred CCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 002744 793 AGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 861 (885)
Q Consensus 793 agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~ 861 (885)
.++-|+||..|.||++.+|--||+.+.||+||+||+||++++.||+|++.+|+||.|+.....|.....
T Consensus 1276 ~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1276 KGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred cCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998887755543
No 307
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=68.29 E-value=62 Score=37.10 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=19.2
Q ss_pred CCceeeCCCCCChHHHHHHHHHccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~ 236 (885)
...+|--+.|+|||..+-++.....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~ 155 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH
Confidence 3568888999999998877665543
No 308
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=68.08 E-value=74 Score=38.05 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=27.0
Q ss_pred CccceecEEEEecccccCCCCcHHHHHHHh-cc-cccEEEEeCcCC
Q 002744 401 LHSLKWERIILDEAHFIKDRRSNTAKAVLA-LE-SSYKWALSGTPL 444 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~s~~~~~~~~-l~-~~~r~lLTGTPi 444 (885)
+....+++||||||+.+..+ ...++.- +. ...++++.-||.
T Consensus 290 ~RG~~~DLLIVDEAAfI~~~---~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 290 ARGQNPDLVIVDEAAFVNPG---ALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred cCCCCCCEEEEECcccCCHH---HHHHHHHHHccCCCceEEEeCCC
Confidence 44456899999999999874 2333332 22 466677777775
No 309
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=67.72 E-value=15 Score=42.85 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=18.0
Q ss_pred CccceecEEEEecccccCCCC
Q 002744 401 LHSLKWERIILDEAHFIKDRR 421 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~ 421 (885)
+....|++|+|||||.++...
T Consensus 295 iRGQ~fnll~VDEA~FI~~~a 315 (668)
T PHA03372 295 IRGQNFHLLLVDEAHFIKKDA 315 (668)
T ss_pred ccCCCCCEEEEehhhccCHHH
Confidence 666789999999999998763
No 310
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=67.52 E-value=16 Score=36.73 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=31.2
Q ss_pred eecEEEEecccccCCCCcH---HHHHHHhc-ccccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 405 KWERIILDEAHFIKDRRSN---TAKAVLAL-ESSYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~---~~~~~~~l-~~~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
++++|++|-+-+.-+.... ..+.+..+ ....-++|++|=-+..+..+......++
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~ 141 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFG 141 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhccc
Confidence 4689999998766443322 11222222 3345578999876666665555555544
No 311
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=67.03 E-value=26 Score=40.17 Aligned_cols=25 Identities=36% Similarity=0.157 Sum_probs=19.2
Q ss_pred CCceeeCCCCCChHHHHHHHHHccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~ 236 (885)
.+.+|--+.|+|||-.+-++.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3567888999999998877765543
No 312
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=66.61 E-value=26 Score=42.26 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=63.6
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHH----HHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINY----SLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 786 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~----~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~V 786 (885)
.+|+|.....-.+..... .+.+++|-+.....+..+.+ .|...|+++..++|+++..+|...+....++ .+.|
T Consensus 265 TGSGKT~va~l~il~~~~--~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~I 341 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIE--AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHL 341 (630)
T ss_pred CCCcHHHHHHHHHHHHHH--cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCE
Confidence 357787654433333333 35689999988776655544 4445589999999999999999888888765 6777
Q ss_pred EEEecCCCcccccccccCEEEE
Q 002744 787 FLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 787 lL~St~agg~GlNL~~A~~VI~ 808 (885)
++.+....-..+.+.....||+
T Consensus 342 iVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 342 VVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEecHHHHhccccccccceEEE
Confidence 7766544444455555554443
No 313
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=66.30 E-value=51 Score=31.13 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=16.9
Q ss_pred eeeCCCCCChHHHHHHHHHccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~ 236 (885)
++.-..|+|||..+..++....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHH
Confidence 4556799999999987766553
No 314
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.14 E-value=3.3 Score=45.05 Aligned_cols=48 Identities=27% Similarity=0.838 Sum_probs=37.9
Q ss_pred hhhhccccCcCCCCc--------cccCCchhhhhhhhhcccccc-----CCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLADDPV--------VTNCGHAFCKACLFDSSASKF-----VAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~--------~~~c~~~~c~~c~~~~~~~~~-----~~~cp~c~~~~~ 675 (885)
...|.+|.+...+.. +..|.|.||..|+..+..... ...||.|+....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 567999987765544 478999999999999885433 678999998765
No 315
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=65.80 E-value=27 Score=40.51 Aligned_cols=43 Identities=23% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHh----hhccCCCceeeCCCCCChHHHHHHHHHccc
Q 002744 194 RYQKEWLAWALKQ----EESAIRGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 194 ~yQ~~~v~~l~~~----~~~~~~ggILADemGlGKTi~aiali~~~~ 236 (885)
|+|+-.+..++-- ..+.++-++|.-.=|-|||..+.+++++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l 47 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML 47 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH
Confidence 6787655554421 112344567777888999999877765544
No 316
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=65.56 E-value=31 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.3
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
-||.-..|+|||..+..++..+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999988876654
No 317
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.45 E-value=36 Score=40.43 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.9
Q ss_pred eeeCCCCCChHHHHHHHHHccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~ 236 (885)
|+.-..|+|||..|..++..+.
T Consensus 39 Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 39 LFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 7899999999999988876654
No 318
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=65.28 E-value=9.7 Score=41.11 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh-H
Q 002744 192 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-V 270 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl-l 270 (885)
|-+-|...+.+ .. +..++--..|+|||.+++.-++.+...... ....+|+|+++.. .
T Consensus 1 l~~eQ~~~i~~-~~------~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~---------------~~~~Il~lTft~~aa 58 (315)
T PF00580_consen 1 LTDEQRRIIRS-TE------GPLLVNAGAGSGKTTTLLERIAYLLYEGGV---------------PPERILVLTFTNAAA 58 (315)
T ss_dssp S-HHHHHHHHS--S------SEEEEEE-TTSSHHHHHHHHHHHHHHTSSS---------------TGGGEEEEESSHHHH
T ss_pred CCHHHHHHHhC-CC------CCEEEEeCCCCCchHHHHHHHHHhhccccC---------------ChHHheecccCHHHH
Confidence 34678888776 22 244555669999999998877766544321 2257899999743 3
Q ss_pred HHHHHHHHH
Q 002744 271 TQWVSEINR 279 (885)
Q Consensus 271 ~qW~~Ei~k 279 (885)
..-..-+..
T Consensus 59 ~e~~~ri~~ 67 (315)
T PF00580_consen 59 QEMRERIRE 67 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 319
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=64.89 E-value=9.5 Score=42.90 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=20.0
Q ss_pred CCceeeCCCCCChHHHHHHHHHccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~ 236 (885)
+.-|+.-..|+|||..|.+++..+.
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3457899999999999988876553
No 320
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.79 E-value=42 Score=37.57 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=17.1
Q ss_pred eeeCCCCCChHHHHHHHHHccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~ 236 (885)
.|.-..|+|||.++..++..+.
T Consensus 245 ~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 245 ALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred EEECCCCCcHHHHHHHHHHHHH
Confidence 4666799999999887776554
No 321
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=64.27 E-value=26 Score=34.85 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=23.3
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhccc--ccEEEEeC
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLALES--SYKWALSG 441 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l~~--~~r~lLTG 441 (885)
.+.|.|||||.+... ....+..+.. ..++++.|
T Consensus 83 ~~~v~IDEaQF~~~~---~v~~l~~lad~lgi~Vi~~G 117 (201)
T COG1435 83 VDCVLIDEAQFFDEE---LVYVLNELADRLGIPVICYG 117 (201)
T ss_pred cCEEEEehhHhCCHH---HHHHHHHHHhhcCCEEEEec
Confidence 679999999999763 4555556543 45666666
No 322
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=64.08 E-value=22 Score=43.72 Aligned_cols=63 Identities=10% Similarity=0.216 Sum_probs=43.4
Q ss_pred CccEEEEccChh----HHHHHHHHHHhCC-CcEEE-EecCCCHHHHHHHHHhhccCCCceEEEEecCCCc
Q 002744 732 SAKGIVFSQFTS----FLDLINYSLHKSG-VNCVQ-LVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGG 795 (885)
Q Consensus 732 ~~KvIIFsq~~~----~l~~L~~~L~~~g-i~~~~-i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg 795 (885)
+.|++|-...+. +.+.|..+-+..| ..... +||.++.+++++++++|.++ +..|++.|++-..
T Consensus 125 gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g-dfdIlitTs~FL~ 193 (1187)
T COG1110 125 GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG-DFDILITTSQFLS 193 (1187)
T ss_pred CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC-CccEEEEeHHHHH
Confidence 466666555554 3444555555555 33332 89999999999999999987 8999987755443
No 323
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=63.73 E-value=4 Score=41.49 Aligned_cols=44 Identities=36% Similarity=0.887 Sum_probs=31.1
Q ss_pred hhccccCcC-CCC-ccccCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 630 VCGLCNDLA-DDP-VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 630 ~~~~~~~~~-~~~-~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
.|..|..-. .++ .++.|.|+||..|.-..... .|+.|+.++.+.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~~----~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKASSPD----VCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccCCcc----ccccccceeeee
Confidence 466666333 333 58899999999999554333 899999986543
No 324
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=63.53 E-value=11 Score=37.63 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=33.1
Q ss_pred CccceecEEEEecccccCCCC----cHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHH
Q 002744 401 LHSLKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 457 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~----s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~f 457 (885)
+..-.|++||+||.-.+-+.. ......+..-+..--++|||-=. +.+|..+.++
T Consensus 111 l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~---p~~Lie~ADl 168 (191)
T PRK05986 111 LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA---PRELIEAADL 168 (191)
T ss_pred HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCch
Confidence 344578999999998765543 33344444334444699999744 4444444444
No 325
>PRK04132 replication factor C small subunit; Provisional
Probab=63.53 E-value=20 Score=44.21 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=33.8
Q ss_pred eecEEEEecccccCCCC-cHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 405 KWERIILDEAHFIKDRR-SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~-s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
++.+||+||||.+-... ..+.+.+.......+++|+.++...-+.-|.|-+..+.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~ 685 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 685 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEe
Confidence 46789999999995432 11222222234677899998887655555555444443
No 326
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=62.80 E-value=46 Score=39.92 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.0
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
-|+.-+.|+|||..|-.++..+.
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 37899999999999988876654
No 327
>PRK10824 glutaredoxin-4; Provisional
Probab=62.38 E-value=43 Score=30.40 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCccEEEEccC------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc-CCCceEEEEecCC
Q 002744 721 EEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-DPDCKIFLMSLKA 793 (885)
Q Consensus 721 ~lL~~~~~~~~~~KvIIFsq~------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~VlL~St~a 793 (885)
+.+.++++ .++|+||+.. =.......+.|...|++|..++=......|. .+.++.. ..-++||+-..-+
T Consensus 6 ~~v~~~I~---~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~I 81 (115)
T PRK10824 6 EKIQRQIA---ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELV 81 (115)
T ss_pred HHHHHHHh---cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEE
Confidence 34444443 4699999874 3467788888988898876665444444444 4455533 3456788866666
Q ss_pred Cc
Q 002744 794 GG 795 (885)
Q Consensus 794 gg 795 (885)
||
T Consensus 82 GG 83 (115)
T PRK10824 82 GG 83 (115)
T ss_pred cC
Confidence 66
No 328
>CHL00095 clpC Clp protease ATP binding subunit
Probab=62.23 E-value=26 Score=43.81 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=19.8
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
.+-||.-+.|.|||..+-+++...
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 477999999999999987776554
No 329
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.98 E-value=35 Score=40.11 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.8
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
-|+.-+.|+|||..|-.++..+.
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 37899999999999887776553
No 330
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=61.60 E-value=42 Score=41.96 Aligned_cols=36 Identities=25% Similarity=0.225 Sum_probs=24.3
Q ss_pred HHHHHHhhhc-cCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 200 LAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 200 v~~l~~~~~~-~~~ggILADemGlGKTi~aiali~~~ 235 (885)
+.+++..+.+ ...+.||.-+.|.|||..+=+++...
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 5555543222 23477999999999999886665543
No 331
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=61.32 E-value=7.3 Score=46.21 Aligned_cols=89 Identities=18% Similarity=0.156 Sum_probs=47.3
Q ss_pred CCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh-----HHHHHHHHHHhcCCCCc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA-----VTQWVSEINRFTSVGST 286 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl-----l~qW~~Ei~k~~~~~~~ 286 (885)
--.|++-++|+|||.|.=-|+...-.... .+.+. +-+=|--|.-+ ...-..|+..+-. ..
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~--------~~~~~-----gmIGITqPRRVAaiamAkRVa~EL~~~~~--eV 336 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASE--------QSSSP-----GMIGITQPRRVAAIAMAKRVAFELGVLGS--EV 336 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCc--------cCCCC-----CeeeecCchHHHHHHHHHHHHHHhccCcc--ce
Confidence 35799999999999998666543311100 00011 22233345322 2444556655322 23
Q ss_pred eEE-EEeCCCcccchhhhcCCCEEEecchhhHHhhhh
Q 002744 287 KVL-IYHGSNRERSAKQFSEFDFVITTYSIIEADYRK 322 (885)
Q Consensus 287 ~v~-v~~g~~~~~~~~~l~~~dvvItty~~l~~~~~~ 322 (885)
.+. .|.|.... +..|-++|-+.|.+++..
T Consensus 337 sYqIRfd~ti~e-------~T~IkFMTDGVLLrEi~~ 366 (1172)
T KOG0926|consen 337 SYQIRFDGTIGE-------DTSIKFMTDGVLLREIEN 366 (1172)
T ss_pred eEEEEeccccCC-------CceeEEecchHHHHHHHH
Confidence 333 35554332 335778899998887644
No 332
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=60.93 E-value=60 Score=33.26 Aligned_cols=24 Identities=33% Similarity=0.196 Sum_probs=19.3
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
+..+|.-+.|+|||-.+.++....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999887765543
No 333
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=60.73 E-value=28 Score=41.44 Aligned_cols=74 Identities=20% Similarity=0.128 Sum_probs=53.7
Q ss_pred ccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 267 (885)
Q Consensus 189 ~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 267 (885)
..-|...|+.+...++.. .-.|+--..|+|||++++-++..++.....+. ..-|+||||-.
T Consensus 376 ~~ildsSq~~A~qs~lty-----elsliqgppGTgkt~vtlkav~tLL~n~s~~~-------------~~epIlvvC~Tn 437 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTY-----ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYT-------------EPEPILVVCLTN 437 (1025)
T ss_pred ceeecHHHHHHHHHHhhh-----hhheeecCCCCCceeehHHHHHHHHhcccccc-------------cccceeeeehhh
Confidence 345677899999888776 34577889999999998877666654332221 23699999985
Q ss_pred hhHHHHHHHHHHh
Q 002744 268 AAVTQWVSEINRF 280 (885)
Q Consensus 268 sll~qW~~Ei~k~ 280 (885)
+.+.|.-.-+-.+
T Consensus 438 havdq~ligiy~~ 450 (1025)
T KOG1807|consen 438 HAVDQYLIGIYYH 450 (1025)
T ss_pred HHHHHHHHHHHhc
Confidence 7889988777653
No 334
>PRK10865 protein disaggregation chaperone; Provisional
Probab=60.36 E-value=27 Score=43.66 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.1
Q ss_pred HHHHHHhhhc-cCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 200 LAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 200 v~~l~~~~~~-~~~ggILADemGlGKTi~aiali~~~ 235 (885)
+..++..+.+ ...+.||.-++|.|||..+-+++...
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 5555543322 23478999999999999997776654
No 335
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.30 E-value=6.2 Score=42.74 Aligned_cols=47 Identities=19% Similarity=0.510 Sum_probs=38.4
Q ss_pred hhhccccCcCCC---CccccCCchhhhhhhhhccccccCCCCCCCCCCccc
Q 002744 629 QVCGLCNDLADD---PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 676 (885)
Q Consensus 629 ~~~~~~~~~~~~---~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~ 676 (885)
..|.+|.+.... -.+++|.|.|-..|+-.+...- ...||.|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 589999976643 4689999999999999888766 7789999986543
No 336
>PRK09183 transposase/IS protein; Provisional
Probab=60.19 E-value=43 Score=35.31 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=18.5
Q ss_pred CCceeeCCCCCChHHHHHHHHHc
Q 002744 212 RGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~ 234 (885)
.+.+|.-+.|+|||..+.++...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46678889999999998877544
No 337
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.70 E-value=3.9 Score=42.45 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=35.6
Q ss_pred hhhccccCcC---CCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 629 QVCGLCNDLA---DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 629 ~~~~~~~~~~---~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
-.|.+|.... +...+++|.|.|-..|+..+.. .....||.|+.++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~-~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLL-GYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHh-hhcccCCccCCCCC
Confidence 5699997543 3357899999999999988765 34678999998763
No 338
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=58.29 E-value=6.3 Score=42.10 Aligned_cols=55 Identities=25% Similarity=0.570 Sum_probs=39.6
Q ss_pred hhhhhhhhccccCcC-CC------------CccccCCchhhhhhhhhccccccCCCCCCCCCCccccccc
Q 002744 624 AEHVQQVCGLCNDLA-DD------------PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTA 680 (885)
Q Consensus 624 ~~~~~~~~~~~~~~~-~~------------~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~~ 680 (885)
....+..|.+|.+.. .. |-.++|||.+-..|+..+. +.+..||.|+.++.-|...
T Consensus 283 l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~--ERqQTCPICr~p~ifd~~~ 350 (491)
T COG5243 283 LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL--ERQQTCPICRRPVIFDQSS 350 (491)
T ss_pred hcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHH--HhccCCCcccCccccccCC
Confidence 344567899998763 22 3578899999999997654 3457899999997655443
No 339
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=58.17 E-value=36 Score=38.33 Aligned_cols=23 Identities=22% Similarity=0.007 Sum_probs=18.6
Q ss_pred CCceeeCCCCCChHHHHHHHHHc
Q 002744 212 RGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~ 234 (885)
.+.|+--..|+|||-.+.++...
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHH
Confidence 58899999999999887775443
No 340
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=57.94 E-value=39 Score=42.59 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=32.0
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhc-ccccEEEEeCcCCCCchhhHHHHHH
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGTPLQNRVGELYSLVR 456 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l-~~~~r~lLTGTPi~N~l~eL~~ll~ 456 (885)
-++||||||-.+.... ..+.+... ....+++|.|=|-|-..-+--+.+.
T Consensus 434 ~~vlIVDEASMv~~~~--m~~LL~~a~~~garvVLVGD~~QLpsV~aG~~f~ 483 (988)
T PRK13889 434 RDVLVIDEAGMVGTRQ--LERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFR 483 (988)
T ss_pred CcEEEEECcccCCHHH--HHHHHHhhhhCCCEEEEECCHHHcCCCCCCchHH
Confidence 4789999999986542 33333322 5678999999887755544333333
No 341
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=57.89 E-value=19 Score=35.55 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=33.2
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHh
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 280 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~ 280 (885)
+++-+.|+|||..++.++......+ .++++|.......+..+.+..+
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g-------------------~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARG-------------------EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCC-------------------CcEEEEECCCCHHHHHHHHHHc
Confidence 6788999999999988877654322 4778888765566655555443
No 342
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=57.76 E-value=46 Score=28.52 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=37.5
Q ss_pred CccEEEEcc------ChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEE
Q 002744 732 SAKGIVFSQ------FTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFL 788 (885)
Q Consensus 732 ~~KvIIFsq------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL 788 (885)
.++|+||+. +=.....+.++|+..|++|..++=....+.+..+.+.-....-+.||+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 469999987 344677888999999999988875555444544444322222345555
No 343
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=56.75 E-value=32 Score=39.09 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhh-
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAA- 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sl- 269 (885)
..+|-|..=..-+.+.+..+ +.|+|-...|+|||+.-++++..+...... .-.-||-|..++
T Consensus 16 ~iYPEQ~~YM~elKrsLDak-Gh~llEMPSGTGKTvsLLSli~aYq~~~p~----------------~~~KliYCSRTvp 78 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAK-GHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----------------EHRKLIYCSRTVP 78 (755)
T ss_pred ccCHHHHHHHHHHHHhhccC-CcEEEECCCCCCcchHHHHHHHHHHHhCCc----------------ccceEEEecCcch
Confidence 36788855443433444444 478999999999999999988877654331 124488887643
Q ss_pred -HHHHHHHHH
Q 002744 270 -VTQWVSEIN 278 (885)
Q Consensus 270 -l~qW~~Ei~ 278 (885)
+..-..|++
T Consensus 79 EieK~l~El~ 88 (755)
T KOG1131|consen 79 EIEKALEELK 88 (755)
T ss_pred HHHHHHHHHH
Confidence 444455544
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.56 E-value=42 Score=38.16 Aligned_cols=22 Identities=32% Similarity=0.185 Sum_probs=17.9
Q ss_pred CCceeeCCCCCChHHHHHHHHH
Q 002744 212 RGGILADEMGMGKTIQAIALVL 233 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~ 233 (885)
...||.-+.|+|||..+-.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999988876654
No 345
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.08 E-value=22 Score=38.41 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=32.5
Q ss_pred eecEEEEecccccCCCCc------HHHHHHHhc--ccccEEEE--eCcCCCCchhhHHHHHHH
Q 002744 405 KWERIILDEAHFIKDRRS------NTAKAVLAL--ESSYKWAL--SGTPLQNRVGELYSLVRF 457 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s------~~~~~~~~l--~~~~r~lL--TGTPi~N~l~eL~~ll~f 457 (885)
++|+|++|=|=++-|... ++.+.+... .++|..+| =||-=||.+...-..-..
T Consensus 221 ~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~ea 283 (340)
T COG0552 221 GIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEA 283 (340)
T ss_pred CCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHh
Confidence 579999999998877642 222222222 34565554 488888887654444333
No 346
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.88 E-value=76 Score=37.03 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.8
Q ss_pred eeeCCCCCChHHHHHHHHHccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~ 236 (885)
|+.-+.|+|||..+.+++..+.
T Consensus 40 Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 40 LFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHh
Confidence 8889999999999988876654
No 347
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=55.88 E-value=48 Score=31.17 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=54.7
Q ss_pred cEEEEccChhHHHHHHHHHHhCCCcE--EEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccccccccCEEEEeCC
Q 002744 734 KGIVFSQFTSFLDLINYSLHKSGVNC--VQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDP 811 (885)
Q Consensus 734 KvIIFsq~~~~l~~L~~~L~~~gi~~--~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A~~VI~~D~ 811 (885)
.|=++||.-.+...+...+...|+.+ ..=.|....-.-.++++.|.+++..+++++-. +.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~------------------E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYL------------------EG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEE------------------S-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEc------------------cC
Confidence 56789999999999999999887665 33345543345567999999999999888654 44
Q ss_pred CCCcchHHHHhhhhhhcCCcccEEEEEEE
Q 002744 812 WWNPAVEQQAQDRIHRIGQYKPIRIVRFL 840 (885)
Q Consensus 812 ~wnp~~~~QaigR~~RiGQ~k~V~VyrLv 840 (885)
.-+|..+.++.-|+.|. |||.+|+-=
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 44788888888777653 888886543
No 348
>PRK07952 DNA replication protein DnaC; Validated
Probab=54.83 E-value=37 Score=35.43 Aligned_cols=44 Identities=25% Similarity=0.095 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhh---ccCCCceeeCCCCCChHHHHHHHHHcccc
Q 002744 194 RYQKEWLAWALKQEE---SAIRGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 194 ~yQ~~~v~~l~~~~~---~~~~ggILADemGlGKTi~aiali~~~~~ 237 (885)
+.|..++..+..-.. ....+.+|.-..|+|||..+.+++..+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345555554443221 22236789999999999999888776653
No 349
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=54.13 E-value=65 Score=38.17 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=19.3
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
-|+.-+.|.|||..|-+++..+.
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhc
Confidence 47899999999999988876654
No 350
>PRK04296 thymidine kinase; Provisional
Probab=53.79 E-value=13 Score=37.09 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.3
Q ss_pred eeeCCCCCChHHHHHHHHHcccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~ 237 (885)
++.-+||.|||..++.++.....
T Consensus 6 litG~~GsGKTT~~l~~~~~~~~ 28 (190)
T PRK04296 6 FIYGAMNSGKSTELLQRAYNYEE 28 (190)
T ss_pred EEECCCCCHHHHHHHHHHHHHHH
Confidence 56678999999999888776643
No 351
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.71 E-value=1.2e+02 Score=36.19 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=19.8
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
.-|+.-+.|+|||..|..++..+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcc
Confidence 456799999999999988876664
No 352
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=53.67 E-value=59 Score=36.94 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=25.3
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhc-ccccEEEEeCcCCCC
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGTPLQN 446 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l-~~~~r~lLTGTPi~N 446 (885)
+|+|.+||+|-+-.. .+..|..+ +.+.|+..-+--+||
T Consensus 296 yD~ilIDE~QDFP~~---F~~Lcf~~tkd~KrlvyAyDelQn 334 (660)
T COG3972 296 YDYILIDESQDFPQS---FIDLCFMVTKDKKRLVYAYDELQN 334 (660)
T ss_pred ccEEEecccccCCHH---HHHHHHHHhcCcceEEEehHhhhc
Confidence 689999999998543 45555555 445666666555555
No 353
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=53.21 E-value=67 Score=40.99 Aligned_cols=50 Identities=30% Similarity=0.293 Sum_probs=33.2
Q ss_pred cEEEEecccccCCCCcHHHHHHHhc-ccccEEEEeCcCCCCchhhHHHHHHHh
Q 002744 407 ERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSGTPLQNRVGELYSLVRFL 458 (885)
Q Consensus 407 ~~vIlDEaH~ikn~~s~~~~~~~~l-~~~~r~lLTGTPi~N~l~eL~~ll~fL 458 (885)
++||||||..+.... ....+... ....+++|.|=|-|-.+-+--..++.|
T Consensus 470 ~vlVIDEAsMv~~~~--m~~Ll~~~~~~garvVLVGD~~QL~~V~aG~~f~~l 520 (1102)
T PRK13826 470 TVFVLDEAGMVASRQ--MALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAI 520 (1102)
T ss_pred cEEEEECcccCCHHH--HHHHHHHHHhcCCEEEEECCHHHcCCCCCCcHHHHH
Confidence 589999999985543 33444444 467899999988876554444444433
No 354
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=52.96 E-value=35 Score=36.09 Aligned_cols=38 Identities=26% Similarity=0.154 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHH
Q 002744 195 YQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVL 233 (885)
Q Consensus 195 yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~ 233 (885)
+.+..+..++.....+ +..+|--+.|+|||..|-++..
T Consensus 6 ~~~~l~~~~l~~l~~g-~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 6 AVKRVTSRALRYLKSG-YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 3344444444333333 5778999999999999988765
No 355
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=52.67 E-value=6.7 Score=38.37 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=33.1
Q ss_pred CccceecEEEEecccccCCCC----cHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHH
Q 002744 401 LHSLKWERIILDEAHFIKDRR----SNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRF 457 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~~----s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~f 457 (885)
+..-.||+||+||.-..-+.. ......+..-+..--++|||.=. +.+|..+.++
T Consensus 93 l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD~ 150 (173)
T TIGR00708 93 LADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELADL 150 (173)
T ss_pred HhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCce
Confidence 334478999999998665433 23444444434445699999854 4555554444
No 356
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=52.56 E-value=62 Score=40.79 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=67.2
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhccCCCceE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 786 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~V 786 (885)
..|+|.....-.+-..+.. +.+++|.+..+..+......+.. .++++..++|.++..++.+.+..+.++ .+.|
T Consensus 481 TGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dI 557 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDI 557 (926)
T ss_pred CCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceE
Confidence 3477877655444333333 46899999999877776665543 467888899999988998999988876 6788
Q ss_pred EEEecCCCcccccccccCEEEE
Q 002744 787 FLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 787 lL~St~agg~GlNL~~A~~VI~ 808 (885)
++.+.......+.+.....||+
T Consensus 558 VIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 558 LIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EEchHHHhhCCCCcccCCEEEe
Confidence 8876655555566666666555
No 357
>PF13173 AAA_14: AAA domain
Probab=52.54 E-value=12 Score=34.69 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=24.6
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhc---ccccEEEEeCcCC
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPL 444 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l---~~~~r~lLTGTPi 444 (885)
-.+||+||+|++.+. ...++.+ ....++++||+-.
T Consensus 62 ~~~i~iDEiq~~~~~----~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDW----EDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CcEEEEehhhhhccH----HHHHHHHHHhccCceEEEEccch
Confidence 467999999999763 3334443 3356899999854
No 358
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=52.47 E-value=11 Score=37.33 Aligned_cols=27 Identities=30% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCCceeeCCCCCChHHHHHHHHHcccc
Q 002744 211 IRGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~~~~ 237 (885)
..|.+|.-.+|.|||..|.+++.....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 357788889999999999998876654
No 359
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=52.01 E-value=1e+02 Score=36.59 Aligned_cols=92 Identities=14% Similarity=0.180 Sum_probs=67.3
Q ss_pred chH-HHHHHHHHHHHHhcCCCccEEEEccCh----hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEE
Q 002744 713 STK-IEALREEIRFMVERDGSAKGIVFSQFT----SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 787 (885)
Q Consensus 713 S~K-l~~L~~lL~~~~~~~~~~KvIIFsq~~----~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~Vl 787 (885)
|+| +-+++.++..+ ..|-++.+....- +.++-+..+|...|+.+..++|+++.++|.+++.+-.++ .+.++
T Consensus 294 SGKTvVA~laml~ai---~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~iv 369 (677)
T COG1200 294 SGKTVVALLAMLAAI---EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIV 369 (677)
T ss_pred CCHHHHHHHHHHHHH---HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEE
Confidence 444 44555555544 2356777777653 556777888888899999999999999999999999887 88888
Q ss_pred EEecCCCcccccccccCEEEE
Q 002744 788 LMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 788 L~St~agg~GlNL~~A~~VI~ 808 (885)
+.+-...-..+++...-.||+
T Consensus 370 VGTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EEcchhhhcceeecceeEEEE
Confidence 877555566666665555554
No 360
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=50.94 E-value=45 Score=37.65 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=24.6
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhcc---cccEEEEeCcCCC
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLALE---SSYKWALSGTPLQ 445 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l~---~~~r~lLTGTPi~ 445 (885)
++.+++|||..+... .....+..++ ...++++|.||-.
T Consensus 102 ~~~~~idEa~~~~~~--~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLTFE--DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcCHH--HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 588999999999432 3333333343 2235999999954
No 361
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=50.64 E-value=85 Score=37.47 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=19.9
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
.-||.-..|+|||..|..++..+.
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhC
Confidence 457788999999999988877654
No 362
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=50.43 E-value=88 Score=36.28 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=48.5
Q ss_pred cccccccHHHHHHHHHHHHHhhhc-----cCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCc
Q 002744 186 PDLITPLLRYQKEWLAWALKQEES-----AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKA 260 (885)
Q Consensus 186 ~~~~~~L~~yQ~~~v~~l~~~~~~-----~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (885)
++....|.|||+-.+.-+.--... .+.-+++--.=|=|||-.+.++++...-.... ....
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~---------------~~~~ 120 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWR---------------SGAG 120 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhh---------------cCCc
Confidence 445567999999877665522221 22345777888999999887666554432221 1246
Q ss_pred EEEEech-hhHHHHHHHHHHh
Q 002744 261 TLVICPV-AAVTQWVSEINRF 280 (885)
Q Consensus 261 ~LIV~P~-sll~qW~~Ei~k~ 280 (885)
++|++|+ -...+=.++++..
T Consensus 121 ~~i~A~s~~qa~~~F~~ar~m 141 (546)
T COG4626 121 IYILAPSVEQAANSFNPARDM 141 (546)
T ss_pred EEEEeccHHHHHHhhHHHHHH
Confidence 7888886 3344455555443
No 363
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=50.43 E-value=59 Score=34.18 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=35.7
Q ss_pred CCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHH
Q 002744 211 IRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEIN 278 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~ 278 (885)
..|.+|-=.+|.|||..|+|+...... .+ .+++++.=+.++.++...+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~-~g------------------~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLK-AG------------------ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH-cC------------------CeEEEEEHHHHHHHHHHHHh
Confidence 468889999999999999988777662 21 36666665667766666654
No 364
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=50.01 E-value=47 Score=40.29 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=72.0
Q ss_pred cccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHH-hCCCcEEEEecCCCHHHHHHHHHhhccCCCceE
Q 002744 708 DEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLH-KSGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 786 (885)
Q Consensus 708 ~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~-~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~V 786 (885)
.-++.|.|.+...+++...+.. |..+||-..-......+...|+ ..|.++..+|++.+..+|.+.-.+..++ ..+|
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G-~~~v 299 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG-EARV 299 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-CceE
Confidence 3466799999999999999876 4788888877766555555554 4578899999999999999998888877 8898
Q ss_pred EEEecCCCcccccccccCE-EEEeC
Q 002744 787 FLMSLKAGGVALNLTVASH-VFLMD 810 (885)
Q Consensus 787 lL~St~agg~GlNL~~A~~-VI~~D 810 (885)
++.+-+| |-++.-|- +|++|
T Consensus 300 VIGtRSA----lF~Pf~~LGLIIvD 320 (730)
T COG1198 300 VIGTRSA----LFLPFKNLGLIIVD 320 (730)
T ss_pred EEEechh----hcCchhhccEEEEe
Confidence 8866333 34444444 44454
No 365
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=49.74 E-value=74 Score=39.97 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=24.7
Q ss_pred HHHHHHhhhc-cCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 200 LAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 200 v~~l~~~~~~-~~~ggILADemGlGKTi~aiali~~~ 235 (885)
+.++...+.+ ...+.||.-+.|.|||..+-+++...
T Consensus 182 i~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 182 IRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 5555543322 23477899999999999987776544
No 366
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=49.34 E-value=91 Score=32.27 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=35.3
Q ss_pred ceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEe---chhhHHHHHHHHHHhc
Q 002744 214 GILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC---PVAAVTQWVSEINRFT 281 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~---P~sll~qW~~Ei~k~~ 281 (885)
++|+-..|+|||..++.+++....-....+. .......+++|+++ |...+.+-...+...+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~-------~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGG-------GLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCC-------ccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 6899999999999998877654321111110 00011246889988 4445555555554443
No 367
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.92 E-value=8.8 Score=41.41 Aligned_cols=45 Identities=29% Similarity=0.631 Sum_probs=35.8
Q ss_pred hhhhccccCcCCC----CccccCCchhhhhhhhhccccccC-CCCCCCCC
Q 002744 628 QQVCGLCNDLADD----PVVTNCGHAFCKACLFDSSASKFV-AKCPTCSI 672 (885)
Q Consensus 628 ~~~~~~~~~~~~~----~~~~~c~~~~c~~c~~~~~~~~~~-~~cp~c~~ 672 (885)
...|.+|.+.... ..+..|||.|-..|+..+..+.-. ..||.|+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4579999765532 357779999999999999987766 59999994
No 368
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=48.60 E-value=5.6 Score=47.61 Aligned_cols=46 Identities=26% Similarity=0.673 Sum_probs=37.6
Q ss_pred hhhccccCcCC-------CCccccCCchhhhhhhhhccccccCCCCCCCCCCc
Q 002744 629 QVCGLCNDLAD-------DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 674 (885)
Q Consensus 629 ~~~~~~~~~~~-------~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~ 674 (885)
.+|++|..... ......|.|-|-..|+..+.++.....||.||..+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 55999975432 23466799999999999999999999999999765
No 369
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=48.18 E-value=20 Score=37.69 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=26.3
Q ss_pred HHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 202 WALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 202 ~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
-|.+...-.++..+||-.+|+|||..|+++...+
T Consensus 55 dlik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 55 DLIKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred HHHHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 3455555566888999999999999988876554
No 370
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=48.05 E-value=1.2e+02 Score=33.14 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.4
Q ss_pred eeCCCCCChHHHHHHHHHccc
Q 002744 216 LADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 216 LADemGlGKTi~aiali~~~~ 236 (885)
+.-..|.|||.++..++..+.
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHH
Confidence 345999999999887776654
No 371
>PRK11823 DNA repair protein RadA; Provisional
Probab=48.03 E-value=60 Score=37.29 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=31.0
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHH
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 279 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k 279 (885)
+|.=++|.|||..++.++...... ..++|.|.-.....|......+
T Consensus 84 lI~G~pG~GKTtL~lq~a~~~a~~-------------------g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 84 LIGGDPGIGKSTLLLQVAARLAAA-------------------GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc-------------------CCeEEEEEccccHHHHHHHHHH
Confidence 688899999999988877654321 1467887765555565544443
No 372
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.03 E-value=83 Score=36.48 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.2
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
+.-|+.-..|+|||..|..++..+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHH
Confidence 356889999999999987776544
No 373
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=47.94 E-value=19 Score=38.98 Aligned_cols=35 Identities=29% Similarity=0.298 Sum_probs=27.9
Q ss_pred HHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 201 AWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 201 ~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
-.|.++-.-.++|.+++-++|+|||..|+++...+
T Consensus 55 v~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 55 VKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred HHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 45566555567888999999999999999887665
No 374
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.75 E-value=6.7 Score=40.09 Aligned_cols=48 Identities=23% Similarity=0.573 Sum_probs=36.5
Q ss_pred hhhhccccCcCC----------CCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLAD----------DPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~----------~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
+.+|.+|....+ ..-.+.|.|.|-+.|+..+---.....||.|...+.
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 346777764332 233678999999999988887778899999987664
No 375
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=47.64 E-value=37 Score=41.67 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.0
Q ss_pred CCceeeCCCCCChHHHHHHHHHc
Q 002744 212 RGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~ 234 (885)
.+.||.=+.|+|||..+-++...
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47799999999999998776543
No 376
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=46.95 E-value=23 Score=38.11 Aligned_cols=133 Identities=13% Similarity=0.144 Sum_probs=77.2
Q ss_pred hhhcccc-CcCCCCccccCCchhhhhhhhhccccccCCC--CCCCCCCccccccccCCCCCCCccc-cccCCCcchhhhh
Q 002744 629 QVCGLCN-DLADDPVVTNCGHAFCKACLFDSSASKFVAK--CPTCSIPLTVDFTANEGAGNRTSKT-TIKGFKSSSILNR 704 (885)
Q Consensus 629 ~~~~~~~-~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~--cp~c~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 704 (885)
..|.-|. ...+.-...+|+..+|..|+.-......... -|--..+...-.. ..... ......+...+..
T Consensus 40 ~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~mgRv~sd~~Ly~~~~~~fp~~s~L~-------W~G~Ls~~Q~~as~~l~q~ 112 (441)
T COG4098 40 YRCNRCGNTHIELFAKLPCGCLYCRNCLMMGRVRSDQKLYYWKPYAFPKKSVLQ-------WKGTLSPGQKKASNQLVQY 112 (441)
T ss_pred EEehhcCCcchhhhcccccceEeehhhhhcccccccceeeecCCcCCCccceee-------eccccChhHHHHHHHHHHH
Confidence 3577776 4445567788999999999976544322110 0100000000000 00000 0001111222222
Q ss_pred hc------ccccCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHH
Q 002744 705 IQ------LDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPA 770 (885)
Q Consensus 705 ~~------~~~~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~ 770 (885)
+. .-.+.+++|.+.+.+-+...+.. |.+|.|-|...++.--|...|+.. +.....++|..+..-
T Consensus 113 i~~k~~~lv~AV~GaGKTEMif~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f 184 (441)
T COG4098 113 IKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYF 184 (441)
T ss_pred HHhcCcEEEEEecCCCchhhhHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhc
Confidence 22 23356799999999999888654 679999999999988888888764 577788888865443
No 377
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.94 E-value=1.2e+02 Score=33.70 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=29.2
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhc---c--cccEEEEeCcCCCCchhhHHHHHH
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLAL---E--SSYKWALSGTPLQNRVGELYSLVR 456 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l---~--~~~r~lLTGTPi~N~l~eL~~ll~ 456 (885)
.++|+||.+=+.-... .....+..+ . ....++|++|--...+.+.+.-+.
T Consensus 216 ~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~ 270 (374)
T PRK14722 216 KHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYR 270 (374)
T ss_pred CCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHH
Confidence 4789999995543222 222333333 1 234578899987777777654444
No 378
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=8.2 Score=40.81 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=39.6
Q ss_pred hhhhhhhhccccCcC-CCCccccCCchhhhhhhhhccccccCCCCCCCCCCcccc
Q 002744 624 AEHVQQVCGLCNDLA-DDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVD 677 (885)
Q Consensus 624 ~~~~~~~~~~~~~~~-~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~ 677 (885)
.......|++|.... ++.++...|..||..|++.+.. ....||.-..+..++
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~--~~~~CPVT~~p~~v~ 348 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV--NYGHCPVTGYPASVD 348 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH--hcCCCCccCCcchHH
Confidence 344566899999655 5556777799999999999988 567888877766544
No 379
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=46.56 E-value=98 Score=27.88 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=59.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCC---CcEEEEecCCCHHHHHHHHHhhccCCCceEE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSG---VNCVQLVGSMSIPARDAAINRFTEDPDCKIF 787 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~Vl 787 (885)
..++|-..+...+..........++||.+........+...+.... ..+..+++........ ... .....++
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i~ 83 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLL--SGKTDIV 83 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHh--cCCCCEE
Confidence 3578888887777777655556799999999988877776665543 6777777766444432 111 2255667
Q ss_pred EEecCCCcccccc----cccCEEEEeCC
Q 002744 788 LMSLKAGGVALNL----TVASHVFLMDP 811 (885)
Q Consensus 788 L~St~agg~GlNL----~~A~~VI~~D~ 811 (885)
+++.......+.. .....+|++|-
T Consensus 84 i~t~~~~~~~~~~~~~~~~~~~~iiiDE 111 (144)
T cd00046 84 VGTPGRLLDELERLKLSLKKLDLLILDE 111 (144)
T ss_pred EECcHHHHHHHHcCCcchhcCCEEEEeC
Confidence 7665544433322 22344555553
No 380
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=46.53 E-value=61 Score=39.60 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=17.9
Q ss_pred CCceeeCCCCCChHHHHHHHHH
Q 002744 212 RGGILADEMGMGKTIQAIALVL 233 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~ 233 (885)
...||.-+.|+|||..|-++..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999988866653
No 381
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=45.93 E-value=33 Score=41.77 Aligned_cols=70 Identities=11% Similarity=0.022 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hh
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AA 269 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sl 269 (885)
.|-|-|++++.+. .+..++.--.|+|||.+.+.-++++....+. ....+|+|+.+ ..
T Consensus 2 ~Ln~~Q~~av~~~-------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v---------------~p~~IL~lTFT~kA 59 (672)
T PRK10919 2 RLNPGQQQAVEFV-------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY---------------QARHIAAVTFTNKA 59 (672)
T ss_pred CCCHHHHHHHhCC-------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeeeEechHHH
Confidence 3678899988652 1245666679999999998888877643221 12578999985 44
Q ss_pred HHHHHHHHHHhcC
Q 002744 270 VTQWVSEINRFTS 282 (885)
Q Consensus 270 l~qW~~Ei~k~~~ 282 (885)
...-..-+.+.++
T Consensus 60 A~em~~Rl~~~l~ 72 (672)
T PRK10919 60 AREMKERVAQTLG 72 (672)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555655544
No 382
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=45.78 E-value=19 Score=39.55 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHhhhccCCCceeeCCCCCChHHHHHHHHHccc
Q 002744 203 ALKQEESAIRGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 203 l~~~~~~~~~ggILADemGlGKTi~aiali~~~~ 236 (885)
|.+.-.-.+++-+||-++|+|||..|+++...+-
T Consensus 42 mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 42 MIKEGKIAGRAILIAGPPGTGKTALAMAIAKELG 75 (398)
T ss_dssp HHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred HHhcccccCcEEEEeCCCCCCchHHHHHHHHHhC
Confidence 3443333567789999999999999999887663
No 383
>PRK14873 primosome assembly protein PriA; Provisional
Probab=44.78 E-value=96 Score=37.54 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=61.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC-C-CcEEEEecCCCHHHHHHHHHhhccCCCceEEEE
Q 002744 712 SSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-G-VNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 789 (885)
Q Consensus 712 ~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~-g-i~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~ 789 (885)
.|.|.+.+.+++...+.. +..+||...-......+...|+.. | ..+..+|+..+..+|.+.-.+..++ ..+|+|.
T Consensus 170 GSGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEE
Confidence 588999999999998775 567888888877777777777643 4 6789999999999999988888766 7788775
Q ss_pred e
Q 002744 790 S 790 (885)
Q Consensus 790 S 790 (885)
+
T Consensus 247 t 247 (665)
T PRK14873 247 T 247 (665)
T ss_pred c
Confidence 5
No 384
>PHA00350 putative assembly protein
Probab=44.09 E-value=46 Score=37.33 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=11.4
Q ss_pred CCCCChHHHHHHH
Q 002744 219 EMGMGKTIQAIAL 231 (885)
Q Consensus 219 emGlGKTi~aial 231 (885)
-+|+|||+.|+..
T Consensus 9 ~pGSGKT~~aV~~ 21 (399)
T PHA00350 9 RPGSYKSYEAVVY 21 (399)
T ss_pred CCCCchhHHHHHH
Confidence 5899999999974
No 385
>PHA00012 I assembly protein
Probab=43.74 E-value=39 Score=36.57 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=16.5
Q ss_pred eeCCCCCChHHHHHHHHHcccc
Q 002744 216 LADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 216 LADemGlGKTi~aiali~~~~~ 237 (885)
+---+|.|||+.|++-|...+.
T Consensus 6 ITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 6 VTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EecCCCCCchHHHHHHHHHHHH
Confidence 3345899999999987666554
No 386
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=43.65 E-value=1.1e+02 Score=34.04 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=20.8
Q ss_pred CceeeCCCCCChHHHHHHHHHcccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~ 237 (885)
.-|+.-..|+|||..|.+++..+.-
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4578899999999999998877753
No 387
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=43.11 E-value=5 Score=50.55 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCC
Q 002744 715 KIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAG 794 (885)
Q Consensus 715 Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ag 794 (885)
+...+.+.+.... +++|+-...++..+...+.. .+.++..+...++.+|... +....+
T Consensus 432 ~~~~~~~~~~~~~-------~~~~~v~itty~~l~~~~~~--------~~~l~~~~~~~~v~DEa~~-------ikn~~s 489 (866)
T COG0553 432 KREALRDLLKLHL-------VIIFDVVITTYELLRRFLVD--------HGGLKKIEWDRVVLDEAHR-------IKNDQS 489 (866)
T ss_pred HHHHHHHHhhhcc-------cceeeEEechHHHHHHhhhh--------HHHHhhceeeeeehhhHHH-------Hhhhhh
Confidence 3455555554331 78888888888888875411 1111112222222222211 355788
Q ss_pred cccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCc
Q 002744 795 GVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQY 831 (885)
Q Consensus 795 g~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~ 831 (885)
.+|.++..+...+.++++|+| .+|++++.|+++|.
T Consensus 490 ~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 490 SEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred HHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 899999999999999999999 79999999999995
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.10 E-value=55 Score=40.28 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=19.9
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
.+.||.=+.|.|||..+-+++...
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 477999999999999987776554
No 389
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=43.08 E-value=91 Score=29.69 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=41.8
Q ss_pred cEEEEccC-------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc----CCCceEEEEe
Q 002744 734 KGIVFSQF-------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE----DPDCKIFLMS 790 (885)
Q Consensus 734 KvIIFsq~-------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~----~~~~~VlL~S 790 (885)
||+||+.. -..-..+..+|+..+++|..++=++....++++.+.... ..-++||+-.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G 68 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDG 68 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECC
Confidence 57888876 345677889999999999999988887778877666543 2345666643
No 390
>PRK10689 transcription-repair coupling factor; Provisional
Probab=42.72 E-value=1.1e+02 Score=39.78 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=64.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh----CCCcEEEEecCCCHHHHHHHHHhhccCCCceE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK----SGVNCVQLVGSMSIPARDAAINRFTEDPDCKI 786 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~V 786 (885)
..++|....+..+...+. .+.+|+|-+..+..+..+...+.. .++++..++|..+..++.+++....++ .+.|
T Consensus 630 TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dI 706 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDI 706 (1147)
T ss_pred CCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCE
Confidence 357888655444333332 357899999998887766665553 356777889999989998888888765 6788
Q ss_pred EEEecCCCcccccccccCEEEE
Q 002744 787 FLMSLKAGGVALNLTVASHVFL 808 (885)
Q Consensus 787 lL~St~agg~GlNL~~A~~VI~ 808 (885)
++.+.......+++.....+|+
T Consensus 707 VVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 707 LIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EEECHHHHhCCCCHhhCCEEEE
Confidence 8877554444455555444443
No 391
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=42.34 E-value=1.2e+02 Score=24.55 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=37.2
Q ss_pred cEEEEccCh-hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccC-CCceEEE
Q 002744 734 KGIVFSQFT-SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFL 788 (885)
Q Consensus 734 KvIIFsq~~-~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~VlL 788 (885)
|+.||+... .....+..+|+..|++|..++-......++++....... .-+.|++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 467777544 456777888899999999888877766776666665433 2334444
No 392
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=41.77 E-value=51 Score=37.89 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=25.9
Q ss_pred eecEEEEecccccCCCCc--HHHHHHHhcccccEEEEeCcC
Q 002744 405 KWERIILDEAHFIKDRRS--NTAKAVLALESSYKWALSGTP 443 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s--~~~~~~~~l~~~~r~lLTGTP 443 (885)
.+++.|+||.|.++.++. .-++++..+.++-. =|.|-|
T Consensus 275 ~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEi-HLCGep 314 (700)
T KOG0953|consen 275 PYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEI-HLCGEP 314 (700)
T ss_pred ceEEEEehhHHhhcCcccchHHHHHHHhhhhhhh-hccCCc
Confidence 588999999999998763 45667777655432 234444
No 393
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=41.71 E-value=44 Score=40.66 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEec-hhhH
Q 002744 192 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP-VAAV 270 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P-~sll 270 (885)
|-|-|++++.+. ....++---.|+|||-+.+.-+.++...... ....+|+|+. ....
T Consensus 2 Ln~~Q~~av~~~-------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~---------------~p~~IL~vTFt~~Aa 59 (664)
T TIGR01074 2 LNPQQQEAVEYV-------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGY---------------KARNIAAVTFTNKAA 59 (664)
T ss_pred CCHHHHHHHhCC-------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC---------------CHHHeEEEeccHHHH
Confidence 668888887541 1345666789999999998888777643221 1246777775 4667
Q ss_pred HHHHHHHHHhcC
Q 002744 271 TQWVSEINRFTS 282 (885)
Q Consensus 271 ~qW~~Ei~k~~~ 282 (885)
.+-...+.+.++
T Consensus 60 ~em~~Rl~~~l~ 71 (664)
T TIGR01074 60 REMKERVAKTLG 71 (664)
T ss_pred HHHHHHHHHHhC
Confidence 777777777654
No 394
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=41.71 E-value=26 Score=26.21 Aligned_cols=29 Identities=31% Similarity=0.859 Sum_probs=15.8
Q ss_pred cCCchhhhhhhhhccccccCCCCCCCCCCc
Q 002744 645 NCGHAFCKACLFDSSASKFVAKCPTCSIPL 674 (885)
Q Consensus 645 ~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~ 674 (885)
.|+..+|..|..+... .....||.|+.+.
T Consensus 19 ~Cgf~IC~~C~~~i~~-~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQICRFCYHDILE-NEGGRCPGCREPY 47 (48)
T ss_dssp TTS----HHHHHHHTT-SS-SB-TTT--B-
T ss_pred cCCCcHHHHHHHHHHh-ccCCCCCCCCCCC
Confidence 5789999999887665 3578999998764
No 395
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=41.34 E-value=38 Score=37.30 Aligned_cols=50 Identities=20% Similarity=0.348 Sum_probs=37.9
Q ss_pred ccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-hhHHHHHHHHHHhc
Q 002744 209 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-AAVTQWVSEINRFT 281 (885)
Q Consensus 209 ~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-sll~qW~~Ei~k~~ 281 (885)
+.-+|.+++-.+|+|||+.|=|++-. ++.|..=|.. +|...|.-|=+|.+
T Consensus 243 rPWkgvLm~GPPGTGKTlLAKAvATE-----------------------c~tTFFNVSsstltSKwRGeSEKlv 293 (491)
T KOG0738|consen 243 RPWKGVLMVGPPGTGKTLLAKAVATE-----------------------CGTTFFNVSSSTLTSKWRGESEKLV 293 (491)
T ss_pred cccceeeeeCCCCCcHHHHHHHHHHh-----------------------hcCeEEEechhhhhhhhccchHHHH
Confidence 34568899999999999998777653 3566666665 66799998877653
No 396
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=39.98 E-value=76 Score=32.48 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=27.9
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchh
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVG 449 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~ 449 (885)
..+++||||++.+-... ...+..+.....+.|-|=|.|-...
T Consensus 62 ~~~~liiDE~~~~~~g~---l~~l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPGY---LLLLLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCChHH---HHHHHhhccCcceEEEECchhccCC
Confidence 46899999999985432 2224444444568888999886543
No 397
>PRK12377 putative replication protein; Provisional
Probab=38.34 E-value=98 Score=32.39 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=21.3
Q ss_pred CCceeeCCCCCChHHHHHHHHHcccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~~ 237 (885)
.+.+|.-.+|+|||-.+.+++..+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~ 127 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA 127 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46688889999999999888776653
No 398
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=38.31 E-value=2.4e+02 Score=28.85 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=23.1
Q ss_pred ecEEEEecccccCCCCcH---HHHHHHhc-ccccEEEEeC
Q 002744 406 WERIILDEAHFIKDRRSN---TAKAVLAL-ESSYKWALSG 441 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~---~~~~~~~l-~~~~r~lLTG 441 (885)
.++||||..|.+.+.... .+..+..+ ....++++|+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 689999999999876422 22222222 3456777776
No 399
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.07 E-value=10 Score=40.83 Aligned_cols=43 Identities=30% Similarity=0.829 Sum_probs=32.4
Q ss_pred hhhhccccCcCCCCccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
...|.+|.+...+.+..+|||.-| |..-+. .-..||.|+..+.
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~---~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK---HLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccceeeecCCcEEE--chHHHh---hCCCCchhHHHHH
Confidence 456999999999999999999966 553332 2334999998764
No 400
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=37.79 E-value=50 Score=38.47 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=30.9
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHH
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVS 275 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~ 275 (885)
|+--..|+|||-.|+-=++++..... +-...+++||+.|+-++.-...
T Consensus 230 VVQGaAGSGKTtiALHRvAyLlY~~R-------------~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 230 VVQGAAGSGKTTIALHRVAYLLYGYR-------------GPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred EEecCCCCCchhHHHHHHHHHHhccc-------------cccccCceEEEcCcHHHHHHHH
Confidence 55667899999998754444433221 1123468999999988655433
No 401
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=37.60 E-value=94 Score=41.81 Aligned_cols=44 Identities=27% Similarity=0.204 Sum_probs=31.5
Q ss_pred cccccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHc
Q 002744 188 LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 188 ~~~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~ 234 (885)
+...|-+-|++++..++... .+-.+|---.|+|||.+.-+++..
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s~---dr~~~I~G~AGTGKTT~l~~v~~~ 1007 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILEST---DRFTVVQGYAGVGKTTQFRAVMSA 1007 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34568999999998877531 134577778999999886555443
No 402
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=37.34 E-value=99 Score=31.82 Aligned_cols=17 Identities=41% Similarity=0.472 Sum_probs=13.6
Q ss_pred CCChHHHHHHHHHcccc
Q 002744 221 GMGKTIQAIALVLAKRE 237 (885)
Q Consensus 221 GlGKTi~aiali~~~~~ 237 (885)
|.|||-.+++++..+..
T Consensus 12 GaGKTT~~~~LAs~la~ 28 (231)
T PF07015_consen 12 GAGKTTAAMALASELAA 28 (231)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 89999998887766654
No 403
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=36.94 E-value=50 Score=34.96 Aligned_cols=42 Identities=17% Similarity=0.045 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
.+.+.|.+.+.+++.. ..+..+++=++|+|||-+.-+++...
T Consensus 63 g~~~~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 63 GLKPENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3567788888776653 11235789999999999987776654
No 404
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=36.83 E-value=3.1e+02 Score=32.78 Aligned_cols=96 Identities=11% Similarity=0.207 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCC-----HHHHHHHHHhhcc--CCCceEEEE
Q 002744 717 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS-----IPARDAAINRFTE--DPDCKIFLM 789 (885)
Q Consensus 717 ~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~-----~~~R~~~i~~F~~--~~~~~VlL~ 789 (885)
+.|-..+..+...-| .-||+|-..-..+..+....+..|+- .+|.|.-+ ..--.++++.|.. +.+.-.+|+
T Consensus 615 ~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil-~ri~~kK~vF~E~k~~~~dvl~~Ya~a~~~g~GaiLl 692 (821)
T KOG1133|consen 615 KDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGIL-ARIVGKKKVFYEPKDTVEDVLEGYAEAAERGRGAILL 692 (821)
T ss_pred HHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchH-HHhhccchhhccCcccHHHHHHHHHHHhhcCCCeEEE
Confidence 344444444444434 57899999999999999988877653 12222110 0012346666654 112224555
Q ss_pred ec--CCCccccccc--ccCEEEEeCCCCC
Q 002744 790 SL--KAGGVALNLT--VASHVFLMDPWWN 814 (885)
Q Consensus 790 St--~agg~GlNL~--~A~~VI~~D~~wn 814 (885)
+. .-.++|||+. -|.-||.+-.|+-
T Consensus 693 aVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 693 AVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred EEeccccccccccccccccEEEEeecCCC
Confidence 52 3446899998 3455777776654
No 405
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=36.77 E-value=20 Score=39.91 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=26.2
Q ss_pred ccccEEEEeCcCCCCchhhHHHHHHHhccCC
Q 002744 432 ESSYKWALSGTPLQNRVGELYSLVRFLQITP 462 (885)
Q Consensus 432 ~~~~r~lLTGTPi~N~l~eL~~ll~fL~~~~ 462 (885)
+.++..++||||+.|.+.|+|++-++|.+..
T Consensus 472 ~G~~L~l~sgTpi~ntlgem~~vqRyl~~~a 502 (637)
T COG4646 472 PGRALVLASGTPITNTLGEMFSVQRYLGAGA 502 (637)
T ss_pred CCCeEEecCCCchhhhHHhhhhhhhhcCccH
Confidence 3456689999999999999999999997543
No 406
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=36.48 E-value=63 Score=36.91 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=19.6
Q ss_pred CceeeCCCCCChHHHHHHHHHcccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~ 237 (885)
-.++.-..|.|||.++..++..+..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467889999999999888766553
No 407
>PRK06450 threonine synthase; Validated
Probab=36.28 E-value=3e+02 Score=30.25 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=62.7
Q ss_pred cCcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEE
Q 002744 710 FQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLM 789 (885)
Q Consensus 710 ~~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~ 789 (885)
...|=|-+...-+|....+. +.+.||-...=.+..-++.+-...|+++..+.-......+...+..+ +.+|+++
T Consensus 76 PTGSfKDRga~~~i~~a~~~--g~~~vv~aSsGN~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~----GA~vi~v 149 (338)
T PRK06450 76 PTGSYKDRGSVTLISYLAEK--GIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESY----GAEVVRV 149 (338)
T ss_pred CcCCCHHHHHHHHHHHHHHc--CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc----CCEEEEE
Confidence 45688998888888777654 34666666666788888899999999987665544556666777777 4555554
Q ss_pred ecCCCcccccccccCEEEEeCCCCCcc
Q 002744 790 SLKAGGVALNLTVASHVFLMDPWWNPA 816 (885)
Q Consensus 790 St~agg~GlNL~~A~~VI~~D~~wnp~ 816 (885)
... -..-..+..-+-.++..+.|||.
T Consensus 150 ~~~-~~~~~~~a~~~g~~~~~~~~np~ 175 (338)
T PRK06450 150 RGS-REDVAKAAENSGYYYASHVLQPQ 175 (338)
T ss_pred CCC-HHHHHHHHHhcCeEeccCCCCcc
Confidence 321 11111111112235666778885
No 408
>PTZ00062 glutaredoxin; Provisional
Probab=36.26 E-value=2e+02 Score=29.02 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCccEEEEccC------hhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccC-CCceEEEEe
Q 002744 719 LREEIRFMVERDGSAKGIVFSQF------TSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMS 790 (885)
Q Consensus 719 L~~lL~~~~~~~~~~KvIIFsq~------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~VlL~S 790 (885)
+.+.|++++. .++|+||+.. =.....+..+|+..|++|..++=....+.|+.+. ++..- .-++|++-.
T Consensus 102 ~~~~v~~li~---~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~-~~sg~~TvPqVfI~G 176 (204)
T PTZ00062 102 TVEKIERLIR---NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK-VYSNWPTYPQLYVNG 176 (204)
T ss_pred HHHHHHHHHh---cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH-HHhCCCCCCeEEECC
Confidence 5555555554 4699999883 3467788899999999998887666655565544 45432 234566533
No 409
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=36.17 E-value=1.8e+02 Score=31.97 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=13.9
Q ss_pred CccceecEEEEecccccCCC
Q 002744 401 LHSLKWERIILDEAHFIKDR 420 (885)
Q Consensus 401 l~~~~w~~vIlDEaH~ikn~ 420 (885)
+....++.||+||+-.+...
T Consensus 93 ~~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 93 IRGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp HHTS--SEEEEESGGGSTTH
T ss_pred ccccccceeeeeecccCchH
Confidence 44457889999999888664
No 410
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=35.72 E-value=59 Score=27.68 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=31.1
Q ss_pred cEEEEechhh-H-HHHHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchh
Q 002744 260 ATLVICPVAA-V-TQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSI 315 (885)
Q Consensus 260 ~~LIV~P~sl-l-~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~ 315 (885)
.+|+|||... . ..-...++++++.-.+.+.+-..+...-.. ...++|+||+|...
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~-~~~~~Dliist~~~ 58 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPS-LLDDADLIVSTTKV 58 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhc-ccCCCcEEEEcCCc
Confidence 5799999844 2 345666777665333333332222111111 34678999999886
No 411
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=35.18 E-value=80 Score=38.82 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=48.8
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-h
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
..|-|-|++++..- .+..++.--.|+|||.+.+.-++++....+. ....+|+|+.+ .
T Consensus 3 ~~Ln~~Q~~av~~~-------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v---------------~p~~IL~lTFTnk 60 (715)
T TIGR01075 3 DGLNDKQREAVAAP-------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENA---------------SPHSIMAVTFTNK 60 (715)
T ss_pred cccCHHHHHHHcCC-------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------------CHHHeEeeeccHH
Confidence 35888999988641 1345777789999999998888877653322 22578999985 4
Q ss_pred hHHHHHHHHHHhcC
Q 002744 269 AVTQWVSEINRFTS 282 (885)
Q Consensus 269 ll~qW~~Ei~k~~~ 282 (885)
....-..-+.+.++
T Consensus 61 AA~em~~Rl~~~~~ 74 (715)
T TIGR01075 61 AAAEMRHRIGALLG 74 (715)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666666654
No 412
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=34.82 E-value=1.2e+02 Score=40.39 Aligned_cols=51 Identities=18% Similarity=0.106 Sum_probs=34.1
Q ss_pred ecEEEEecccccCCCCcHHHHHHHhcc-cccEEEEeCcCCCCchhhHHHHHHHh
Q 002744 406 WERIILDEAHFIKDRRSNTAKAVLALE-SSYKWALSGTPLQNRVGELYSLVRFL 458 (885)
Q Consensus 406 w~~vIlDEaH~ikn~~s~~~~~~~~l~-~~~r~lLTGTPi~N~l~eL~~ll~fL 458 (885)
-++||||||-.+.+.. ..+.+..+. ...|++|.|=|-|-..-+--..|+.|
T Consensus 931 ~~llIVDEASMV~~~~--m~~ll~~~~~~garvVLVGD~~QL~sV~aG~~F~~l 982 (1623)
T PRK14712 931 NTLFLLDESSMVGNTD--MARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQ 982 (1623)
T ss_pred CcEEEEEccccccHHH--HHHHHHhhhhCCCEEEEEcchhhcCCCCCCHHHHHH
Confidence 4789999999997743 333344443 35799999988876665544444443
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.69 E-value=54 Score=33.59 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=32.9
Q ss_pred ceeeCCCCCChHHHHHHHHHccccc-ccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHh
Q 002744 214 GILADEMGMGKTIQAIALVLAKREI-RGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 280 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~ 280 (885)
.+++=+.|+|||+.++-++...... + .+++.|.-..-..++.+.+..+
T Consensus 22 ~li~G~~GsGKT~l~~q~l~~~~~~~g-------------------e~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 22 VLISGPPGSGKTTLALQFLYNGLKNFG-------------------EKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHHT---------------------EEEEESSS-HHHHHHHHHTT
T ss_pred EEEEeCCCCCcHHHHHHHHHHhhhhcC-------------------CcEEEEEecCCHHHHHHHHHHc
Confidence 3678899999999999888766554 2 3678888655556666666544
No 414
>PF12846 AAA_10: AAA-like domain
Probab=34.37 E-value=55 Score=34.92 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=30.6
Q ss_pred CceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHH
Q 002744 213 GGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSE 276 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~E 276 (885)
+.++.-.+|+|||..+..++......+ .+++|+-|..=...|.+.
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g-------------------~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRG-------------------PRVVIFDPKGDYSPLARA 47 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcC-------------------CCEEEEcCCchHHHHHHh
Confidence 567778999999998877766555433 367888887444444443
No 415
>PRK10867 signal recognition particle protein; Provisional
Probab=34.29 E-value=93 Score=35.48 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=19.8
Q ss_pred ceeeCCCCCChHHHHHHHHHccccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKREI 238 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~~~ 238 (885)
.++.-..|.|||.+++-++..+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3667899999999998887766543
No 416
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.25 E-value=1.2e+02 Score=34.95 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 713 STKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 713 S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
..+...++.-|--.+....-.-+|||-...--.-.|..+++..++.++.|.--++..+-.++-+-|..+ ...|||.+-+
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER 611 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTER 611 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehh
Confidence 445555554433222222234678887665555567889999999999888877777777788888887 7888998765
Q ss_pred CCc-ccccccccCEEEEeCCCCCcchHHHHh---hhhhhcCCcc--cEEEEEEEeC
Q 002744 793 AGG-VALNLTVASHVFLMDPWWNPAVEQQAQ---DRIHRIGQYK--PIRIVRFLIE 842 (885)
Q Consensus 793 agg-~GlNL~~A~~VI~~D~~wnp~~~~Qai---gR~~RiGQ~k--~V~VyrLv~~ 842 (885)
+-= .-..+.....||+|.||-||.-|.--+ +|.--.|.+. .-++.-|+++
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 542 245577889999999999997776554 4444455432 2444445554
No 417
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=34.17 E-value=66 Score=27.29 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=30.0
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 767 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~ 767 (885)
++.++|+||..-.........|...|+++..++|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4578999998766677778899999998888999874
No 418
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=34.11 E-value=89 Score=28.74 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCccEEEEccC-hhHHHHHHHHHHhCCCcEEEEecCCC
Q 002744 730 DGSAKGIVFSQF-TSFLDLINYSLHKSGVNCVQLVGSMS 767 (885)
Q Consensus 730 ~~~~KvIIFsq~-~~~l~~L~~~L~~~gi~~~~i~G~~~ 767 (885)
.++.++||||+. -.........|+..|+++..++|++.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 346799999974 34455666888889999888999874
No 419
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=34.08 E-value=3.7e+02 Score=29.19 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=20.8
Q ss_pred CCceeeCCCCCChHHHHHHHHHccc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~~ 236 (885)
+.-++.-+.|.||+..|.+++..+.
T Consensus 27 ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 27 PAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHc
Confidence 4557888999999999998887665
No 420
>PRK08939 primosomal protein DnaI; Reviewed
Probab=33.90 E-value=1.1e+02 Score=33.19 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=21.6
Q ss_pred CCCceeeCCCCCChHHHHHHHHHcccc
Q 002744 211 IRGGILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~~~~ 237 (885)
.+|-+|.-.+|+|||..+.|++..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356778889999999999888776653
No 421
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=33.90 E-value=4.8e+02 Score=26.08 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHh----cCCCccEEEEccChh----HHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEE
Q 002744 716 IEALREEIRFMVE----RDGSAKGIVFSQFTS----FLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIF 787 (885)
Q Consensus 716 l~~L~~lL~~~~~----~~~~~KvIIFsq~~~----~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~Vl 787 (885)
+...+..|..... .....|+|++|---+ =+.++..+|+..|+++..+-..++.++-.+.+.+. ++.++
T Consensus 64 ~~~~l~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~----~pd~v 139 (197)
T TIGR02370 64 MLAGIKVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE----KPLML 139 (197)
T ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc----CCCEE
Confidence 4444444444333 122468888885533 36778899999999999998888888777777766 44456
Q ss_pred EEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhcCCcccEEE
Q 002744 788 LMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRI 836 (885)
Q Consensus 788 L~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~V 836 (885)
.+|.... -+.....+.+..+.+.|....|.|
T Consensus 140 ~lS~~~~------------------~~~~~~~~~i~~l~~~~~~~~v~i 170 (197)
T TIGR02370 140 TGSALMT------------------TTMYGQKDINDKLKEEGYRDSVKF 170 (197)
T ss_pred EEccccc------------------cCHHHHHHHHHHHHHcCCCCCCEE
Confidence 6563221 123445677777777776655554
No 422
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.17 E-value=13 Score=38.61 Aligned_cols=41 Identities=32% Similarity=0.813 Sum_probs=33.8
Q ss_pred hhhhccccCcCCCCccccCCch-hhhhhhhhccccccCCCCCCCCCCc
Q 002744 628 QQVCGLCNDLADDPVVTNCGHA-FCKACLFDSSASKFVAKCPTCSIPL 674 (885)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~c~~~-~c~~c~~~~~~~~~~~~cp~c~~~~ 674 (885)
...|.+|.+...+-+++.|||. -|..|-... ..||.||..+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm------~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM------NECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc------ccCchHHHHH
Confidence 6789999999999999999995 688876443 3899998754
No 423
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=32.74 E-value=23 Score=37.14 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=28.1
Q ss_pred hhccccCcCCCC-ccccCCchhhhhhhhhccccccCCCCCCCCCCc
Q 002744 630 VCGLCNDLADDP-VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPL 674 (885)
Q Consensus 630 ~~~~~~~~~~~~-~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~ 674 (885)
-|..|..+.... ....|.|+||.+|-.... ...||.|...+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~----dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDS----DKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCc----cccCcCcccHH
Confidence 366666555443 466899999999985433 56788887644
No 424
>PF04641 Rtf2: Rtf2 RING-finger
Probab=32.73 E-value=59 Score=34.31 Aligned_cols=51 Identities=22% Similarity=0.446 Sum_probs=37.9
Q ss_pred hhhhhhccccCcCCC----CccccCCchhhhhhhhhccccccCCCCCCCCCCcccccc
Q 002744 626 HVQQVCGLCNDLADD----PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFT 679 (885)
Q Consensus 626 ~~~~~~~~~~~~~~~----~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~~~~ 679 (885)
.....|++....... ..+..|||+|+..++.+.. ....||.|..++.....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccCCE
Confidence 345578888876643 3577999999999998873 34569999999875433
No 425
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=32.57 E-value=35 Score=25.65 Aligned_cols=41 Identities=27% Similarity=0.607 Sum_probs=31.3
Q ss_pred hccccC--cCCCCccccCC-----chhhhhhhhhccccccCCCCCCCC
Q 002744 631 CGLCND--LADDPVVTNCG-----HAFCKACLFDSSASKFVAKCPTCS 671 (885)
Q Consensus 631 ~~~~~~--~~~~~~~~~c~-----~~~c~~c~~~~~~~~~~~~cp~c~ 671 (885)
|.+|.+ ..+++++.+|. +.+-..|+..+........||.|.
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 556664 44567788884 678889999999888778999884
No 426
>PRK05973 replicative DNA helicase; Provisional
Probab=32.52 E-value=74 Score=33.02 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.4
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
.+|+-.+|+|||+.++-++....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 48899999999999988876554
No 427
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=32.49 E-value=88 Score=34.23 Aligned_cols=86 Identities=17% Similarity=0.088 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccch
Q 002744 221 GMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA 300 (885)
Q Consensus 221 GlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~ 300 (885)
|+|||=.+++++..+...+...+- -++..+.-..+..++|.|.+...+--+|-.-... .+.+.++.|.++....
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~I----lSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~--~~~~~V~V~~dR~~~~ 120 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAI----LSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLAR--KLPVPVIVGPDRVAAA 120 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEE----EcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHH--hcCCcEEEeCcHHHHH
Confidence 899999999998887765322111 1222222222347888887755554455322211 1114455555544433
Q ss_pred hhh-c--CCCEEEec
Q 002744 301 KQF-S--EFDFVITT 312 (885)
Q Consensus 301 ~~l-~--~~dvvItt 312 (885)
..+ . ..++||..
T Consensus 121 ~~~~~~~~~dviilD 135 (326)
T PF02606_consen 121 RAALKEFPADVIILD 135 (326)
T ss_pred HHHHHHCCCCEEEEc
Confidence 221 1 25666554
No 428
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.06 E-value=22 Score=39.72 Aligned_cols=34 Identities=32% Similarity=0.712 Sum_probs=27.4
Q ss_pred CccccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 641 PVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 641 ~~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
..+++|.|.|-..|+..+..+.. ..||.|+.++.
T Consensus 601 Ym~tPC~HifH~~CL~~WMd~yk-l~CPvCR~pLP 634 (636)
T KOG0828|consen 601 YMLTPCHHIFHRQCLLQWMDTYK-LICPVCRCPLP 634 (636)
T ss_pred ccccchHHHHHHHHHHHHHhhhc-ccCCccCCCCC
Confidence 35779999999999998876432 68999998763
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.94 E-value=68 Score=36.02 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccch
Q 002744 221 GMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA 300 (885)
Q Consensus 221 GlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~ 300 (885)
|+|||-++.-++.++...+ +.+|+|+--.--.--.++++.... ...|-+|.-.......
T Consensus 110 GsGKTTt~~KLA~~lkk~~-------------------~kvllVaaD~~RpAA~eQL~~La~--q~~v~~f~~~~~~~Pv 168 (451)
T COG0541 110 GSGKTTTAGKLAKYLKKKG-------------------KKVLLVAADTYRPAAIEQLKQLAE--QVGVPFFGSGTEKDPV 168 (451)
T ss_pred CCChHhHHHHHHHHHHHcC-------------------CceEEEecccCChHHHHHHHHHHH--HcCCceecCCCCCCHH
Q ss_pred hhh---------cCCCEEEe
Q 002744 301 KQF---------SEFDFVIT 311 (885)
Q Consensus 301 ~~l---------~~~dvvIt 311 (885)
... ..+||||+
T Consensus 169 ~Iak~al~~ak~~~~DvvIv 188 (451)
T COG0541 169 EIAKAALEKAKEEGYDVVIV 188 (451)
T ss_pred HHHHHHHHHHHHcCCCEEEE
No 430
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=31.88 E-value=1.3e+02 Score=34.74 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=31.7
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHH
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINR 279 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k 279 (885)
+|+=++|.|||..++.++...... .+++|.|....-..|......+
T Consensus 98 lI~G~pGsGKTTL~lq~a~~~a~~-------------------g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 98 LIGGDPGIGKSTLLLQVACQLAKN-------------------QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhc-------------------CCcEEEEECcCCHHHHHHHHHH
Confidence 788999999999988876654321 1467888876556665544443
No 431
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=31.51 E-value=26 Score=37.93 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred cEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCch
Q 002744 407 ERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRV 448 (885)
Q Consensus 407 ~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l 448 (885)
.+||+||||+ ... .+.-..+.+|....+..+||.+.|-.+
T Consensus 245 AfVIlDEaQN-tT~-~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN-TTV-GQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc-cch-hhhceeeeeecCCceEEEEcCcccccC
Confidence 4799999998 221 222234455678889999999987543
No 432
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=31.46 E-value=1.1e+02 Score=37.74 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEech-h
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
..|-|-|++++.+. .+..++---.|+|||.+.+.-++++....+. ....+|+|+-+ .
T Consensus 8 ~~Ln~~Q~~av~~~-------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v---------------~p~~IL~lTFT~k 65 (721)
T PRK11773 8 DSLNDKQREAVAAP-------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENA---------------SPYSIMAVTFTNK 65 (721)
T ss_pred HhcCHHHHHHHhCC-------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCC---------------ChhHeEeeeccHH
Confidence 45889999988642 1244666679999999998888877643322 12578888885 4
Q ss_pred hHHHHHHHHHHhcC
Q 002744 269 AVTQWVSEINRFTS 282 (885)
Q Consensus 269 ll~qW~~Ei~k~~~ 282 (885)
....-..-+.+.++
T Consensus 66 AA~Em~~Rl~~~~~ 79 (721)
T PRK11773 66 AAAEMRHRIEQLLG 79 (721)
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555665554
No 433
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=30.93 E-value=1.3e+02 Score=33.45 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=20.3
Q ss_pred CCCceeeCCCCCChHHHHHHHHHcc
Q 002744 211 IRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~~ 235 (885)
.+|.+|.-+.|+|||..+-+++...
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999987776543
No 434
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=30.90 E-value=1.8e+02 Score=31.22 Aligned_cols=66 Identities=9% Similarity=0.117 Sum_probs=53.3
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc-----CCCceEEEEecCCCcccccccc
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE-----DPDCKIFLMSLKAGGVALNLTV 802 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-----~~~~~VlL~St~agg~GlNL~~ 802 (885)
...+|||-..-..+-...+..|+..|+++.|+.|....+.-..+...|++ -++..+++++ |.++++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~------GwDy~~ 145 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY------GWDYAD 145 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe------ccccHH
Confidence 36799999999999999999999999999999999988887888888863 2346677766 556553
No 435
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=21 Score=29.17 Aligned_cols=46 Identities=30% Similarity=0.614 Sum_probs=33.4
Q ss_pred hhccccCcCCC-C-ccccCCchhhhhhhhhccccc-cCCCCCCCCCCcc
Q 002744 630 VCGLCNDLADD-P-VVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPLT 675 (885)
Q Consensus 630 ~~~~~~~~~~~-~-~~~~c~~~~c~~c~~~~~~~~-~~~~cp~c~~~~~ 675 (885)
.|+.|.-+.++ | ++-.|.|.|-.-|+.....+. .+..||+||..+.
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 45555555544 3 345789999999999988754 5689999998654
No 436
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=30.90 E-value=1.1e+02 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=28.1
Q ss_pred CCCccEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCC
Q 002744 730 DGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 767 (885)
Q Consensus 730 ~~~~KvIIFsq~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 767 (885)
.++.++||||+.-.........|...|++ +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 35678999998755555566788888995 667888763
No 437
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=30.67 E-value=1.1e+02 Score=29.20 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=23.3
Q ss_pred EEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCC
Q 002744 261 TLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSN 295 (885)
Q Consensus 261 ~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~ 295 (885)
+.||+=.+|..+..+-|+.-.| .+.++..+|+.
T Consensus 69 ~~vi~CSALKr~YRD~LR~~~~--~~~Fv~L~g~~ 101 (161)
T COG3265 69 HVVIACSALKRSYRDLLREANP--GLRFVYLDGDF 101 (161)
T ss_pred ceEEecHHHHHHHHHHHhccCC--CeEEEEecCCH
Confidence 3444445688899999988887 57777777754
No 438
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=30.47 E-value=30 Score=37.84 Aligned_cols=32 Identities=25% Similarity=0.782 Sum_probs=28.3
Q ss_pred hhhccccCcCCCCccccCCchhhhhhhhhccc
Q 002744 629 QVCGLCNDLADDPVVTNCGHAFCKACLFDSSA 660 (885)
Q Consensus 629 ~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~ 660 (885)
-.|++|....++|+++.|+|..|..|-.....
T Consensus 5 lkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 5 LKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46999999999999999999999999876543
No 439
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.33 E-value=1.5e+02 Score=31.45 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=27.6
Q ss_pred EEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 408 RIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 408 ~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
++|+|-. .+...-.........-.-..+++|-..-..+...+.++..-++
T Consensus 195 ~LVl~a~--~~~~~~~~~~~f~~~~~~~g~IlTKlDe~~~~G~~l~~~~~~~ 244 (272)
T TIGR00064 195 LLVLDAT--TGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGIILSIAYELK 244 (272)
T ss_pred EEEEECC--CCHHHHHHHHHHHhhCCCCEEEEEccCCCCCccHHHHHHHHHC
Confidence 4666653 3332222222222222346688888777777777777776654
No 440
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=30.27 E-value=92 Score=31.83 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=32.6
Q ss_pred eeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHh
Q 002744 215 ILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRF 280 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~ 280 (885)
+++-+.|+|||..++.++......+ .+++.|.-..-..+-.+.+..+
T Consensus 20 li~G~~G~GKt~~~~~~~~~~~~~g-------------------~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 20 VVIGEYGTGKTTFSLQFLYQGLKNG-------------------EKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEECCCCHHHHHHHHHHc
Confidence 6788999999999988876544321 4778888765555555555443
No 441
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.93 E-value=24 Score=38.55 Aligned_cols=49 Identities=27% Similarity=0.548 Sum_probs=36.5
Q ss_pred hhhhhhccccCc---CCCCccccCCchhhhhhhhhccccc-cCCCCCCCCCCc
Q 002744 626 HVQQVCGLCNDL---ADDPVVTNCGHAFCKACLFDSSASK-FVAKCPTCSIPL 674 (885)
Q Consensus 626 ~~~~~~~~~~~~---~~~~~~~~c~~~~c~~c~~~~~~~~-~~~~cp~c~~~~ 674 (885)
+...+|++..+. .+.|.-+.|||+.|++.+.....+. ..-+||.|....
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 345568888754 3668899999999999998765533 367999997654
No 442
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=29.72 E-value=1.8e+02 Score=31.83 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhc-cCCCc-eeeCCCCCChHHHHHHHHHccc
Q 002744 195 YQKEWLAWALKQEES-AIRGG-ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 195 yQ~~~v~~l~~~~~~-~~~gg-ILADemGlGKTi~aiali~~~~ 236 (885)
.|...+..+.....+ ....+ |+.-+.|.|||..|..++....
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~ 53 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLF 53 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHC
Confidence 344444444443332 22344 8899999999999988876654
No 443
>PRK13766 Hef nuclease; Provisional
Probab=29.63 E-value=6.5e+02 Score=31.23 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=57.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC-C---CcEEEEecCCCHHHHHHHHHhhccCCCceE
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-G---VNCVQLVGSMSIPARDAAINRFTEDPDCKI 786 (885)
Q Consensus 711 ~~S~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~-g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~V 786 (885)
.+++|.....-.+...+. .++.++||.+.....+......+... + .++..++|.++..+|.++.. +..|
T Consensus 38 tG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~------~~~i 110 (773)
T PRK13766 38 TGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE------KAKV 110 (773)
T ss_pred CCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh------CCCE
Confidence 346777644444444432 34679999999877665555555432 3 37788999998887765443 2356
Q ss_pred EEEecCCCc-----ccccccccCEEEEeCCC
Q 002744 787 FLMSLKAGG-----VALNLTVASHVFLMDPW 812 (885)
Q Consensus 787 lL~St~agg-----~GlNL~~A~~VI~~D~~ 812 (885)
++++..... .-+++...+.||+=+.+
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 776654332 23455666677766654
No 444
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=29.52 E-value=1.8e+02 Score=28.19 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.1
Q ss_pred eeeCCCCCChHHHHHHHHHcccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~ 237 (885)
++.-..|.|||..+..++.....
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 56678999999999888766543
No 445
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=29.39 E-value=28 Score=32.28 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=15.7
Q ss_pred ceeeCCCCCChHHHHHHHHHcc
Q 002744 214 GILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~ 235 (885)
.+|-+.+|+|||..+.+++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 4788999999999998887654
No 446
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=29.28 E-value=1.2e+02 Score=25.59 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=28.3
Q ss_pred EEEEechhh-HHH-HHHHHHHhcCCCCceEEEEeCCCcccchhhhcCCCEEEecchh
Q 002744 261 TLVICPVAA-VTQ-WVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSI 315 (885)
Q Consensus 261 ~LIV~P~sl-l~q-W~~Ei~k~~~~~~~~v~v~~g~~~~~~~~~l~~~dvvItty~~ 315 (885)
+|||||... ..+ -...++++++.......+....-.. ....++|+||+|-..
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~---~~~~~~DlIisT~~l 55 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS---AKASSADIIVTSKDL 55 (86)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc---cCCCCCCEEEEchhh
Confidence 699999844 333 3345666665323332222222111 114678999999864
No 447
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=29.25 E-value=74 Score=27.59 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMS 767 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~ 767 (885)
++.++||+|..-.........|...|+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4578999999877778888899999999777888874
No 448
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=29.18 E-value=2.4e+02 Score=22.66 Aligned_cols=44 Identities=11% Similarity=0.153 Sum_probs=31.2
Q ss_pred cEEEEccCh-hHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHh
Q 002744 734 KGIVFSQFT-SFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINR 777 (885)
Q Consensus 734 KvIIFsq~~-~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~ 777 (885)
++.||+... ........+|+..|++|..++=......+.++.+.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~ 46 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEER 46 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHH
Confidence 678887664 45677888899999999888766655555554444
No 449
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=22 Score=38.88 Aligned_cols=45 Identities=31% Similarity=0.623 Sum_probs=36.4
Q ss_pred hhhccccCcCCCC-----ccccCCchhhhhhhhhccccccCCCCCCCCCC
Q 002744 629 QVCGLCNDLADDP-----VVTNCGHAFCKACLFDSSASKFVAKCPTCSIP 673 (885)
Q Consensus 629 ~~~~~~~~~~~~~-----~~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~ 673 (885)
..|++|.+....+ +.+.|+|.|-..|+..+........||.|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 3688998765443 57899999999999999976667889999764
No 450
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=28.94 E-value=41 Score=35.75 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=14.5
Q ss_pred CCCCChHHHHHHHHHcccc
Q 002744 219 EMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 219 emGlGKTi~aiali~~~~~ 237 (885)
-=|.|||.+++.++..+..
T Consensus 9 KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 9 KGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CCCccHHHHHHHHHHHHHH
Confidence 4479999999877766654
No 451
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=28.73 E-value=79 Score=35.60 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=19.9
Q ss_pred CCCceeeCCCCCChHHHHHHHHHc
Q 002744 211 IRGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~ 234 (885)
.+|.+|.-+.|+|||..|-+++..
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 457899999999999998777554
No 452
>PHA00673 acetyltransferase domain containing protein
Probab=28.65 E-value=68 Score=30.79 Aligned_cols=45 Identities=22% Similarity=0.086 Sum_probs=35.8
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhc---ccccEEEEeCcCCCCchh
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLAL---ESSYKWALSGTPLQNRVG 449 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l---~~~~r~lLTGTPi~N~l~ 449 (885)
..+-|.||+.|+=++-.+.+...+... ..-++|-+||||-.|...
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 578899999999888777776666554 456789999999998753
No 453
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=28.58 E-value=1.4e+02 Score=37.40 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=56.5
Q ss_pred ceEEEEecCCCcccccccccCEEEEeCCCCCcchHHHHhhhhhhc-----CC---cccEEEEEEEeCCCHHHHHHHHHH
Q 002744 784 CKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRI-----GQ---YKPIRIVRFLIENTIEERILKLQE 854 (885)
Q Consensus 784 ~~VlL~St~agg~GlNL~~A~~VI~~D~~wnp~~~~QaigR~~Ri-----GQ---~k~V~VyrLv~~~TiEe~i~~~~~ 854 (885)
+.-||.|-.+..+|.+-+.+=.+.-+...-+...-.|-+||..|+ |. .+++ +...++..|.++..-.+|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~-~LTvianesy~dFa~~LQ~ 578 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEF-RLNYLIDYDEKDFASKLVG 578 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccE-EEEEEeCccHHHHHHHHHH
Confidence 455777999999999999999988888888999999999999996 32 1346 6677788888877766654
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=28.53 E-value=75 Score=36.94 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=30.1
Q ss_pred ccHHHHHHHHHHHHHhhhccCCC-ceeeCCCCCChHHHHHHHHHcc
Q 002744 191 PLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~g-gILADemGlGKTi~aiali~~~ 235 (885)
.+-|.|.+.+.+++.. .+| .++.-++|+|||-+.-+++...
T Consensus 225 g~~~~~~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 225 GMSPELLSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CCCHHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 4578888888887654 123 3689999999999987765544
No 455
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.53 E-value=3.3e+02 Score=26.51 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=45.8
Q ss_pred CccEEEEccChhHHHHHHHHHHhC--CCcEEE-EecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKS--GVNCVQ-LVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~-i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
+.++-++......++.+.+.|+.. |+..+- .+|.....+..++++..+.. ++.++++..
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~-~pdiv~vgl 107 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS-GADILFVGL 107 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEEC
Confidence 579999999999999999888765 666655 67888777777788888765 677777664
No 456
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=28.47 E-value=43 Score=35.41 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=14.3
Q ss_pred CCCCChHHHHHHHHHcccc
Q 002744 219 EMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 219 emGlGKTi~aiali~~~~~ 237 (885)
-=|.|||.+++.++..+..
T Consensus 8 KGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred CCcCcHHHHHHHHHHHHHh
Confidence 3489999999887766543
No 457
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.35 E-value=91 Score=34.17 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.8
Q ss_pred cCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 210 AIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 210 ~~~ggILADemGlGKTi~aiali~~~ 235 (885)
..+|.+|--.+|+|||+.|=|++...
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 35799999999999999998876544
No 458
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=28.21 E-value=57 Score=31.67 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=34.4
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHhc
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQ 459 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL~ 459 (885)
.+++||+|=...+.+ ....+..+.....+++..+|-..++.+...++.++.
T Consensus 67 ~yD~VIiD~pp~~~~----~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~ 117 (169)
T cd02037 67 ELDYLVIDMPPGTGD----EHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFK 117 (169)
T ss_pred CCCEEEEeCCCCCcH----HHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHH
Confidence 579999998876522 111222223446677777888888888888888875
No 459
>PRK10037 cell division protein; Provisional
Probab=28.08 E-value=44 Score=34.93 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=16.2
Q ss_pred eeCCCCCChHHHHHHHHHcccc
Q 002744 216 LADEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 216 LADemGlGKTi~aiali~~~~~ 237 (885)
..--=|.|||.+++.++..+..
T Consensus 7 ~n~KGGvGKTT~a~nLA~~La~ 28 (250)
T PRK10037 7 QGVRGGVGTTSITAALAWSLQM 28 (250)
T ss_pred ecCCCCccHHHHHHHHHHHHHh
Confidence 3444589999999888766654
No 460
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=28.07 E-value=60 Score=31.34 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.2
Q ss_pred eeeCCCCCChHHHHHHHHHccccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKREI 238 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~~~ 238 (885)
|.+-++|.|||..+++++..+.+.
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~ 25 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKA 25 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHC
Confidence 567789999999999998887654
No 461
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=27.99 E-value=5.9e+02 Score=25.04 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=55.1
Q ss_pred cchHHH-HHHHHHHHHHhc--CCCccEEEEccChhHHHHHHHHH----HhCCCcEEEEecCCCHHHHHHHHHhhccCCCc
Q 002744 712 SSTKIE-ALREEIRFMVER--DGSAKGIVFSQFTSFLDLINYSL----HKSGVNCVQLVGSMSIPARDAAINRFTEDPDC 784 (885)
Q Consensus 712 ~S~Kl~-~L~~lL~~~~~~--~~~~KvIIFsq~~~~l~~L~~~L----~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 784 (885)
+++|-. .+.-++..+... ..+.++||.+.....+..+...+ ...++....++|+.+..++...+. .++
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 120 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK-----RGP 120 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc-----CCC
Confidence 466743 355555555444 35678999998877655544433 445788888999887655543332 256
Q ss_pred eEEEEecCCC-----cccccccccCEEEEeC
Q 002744 785 KIFLMSLKAG-----GVALNLTVASHVFLMD 810 (885)
Q Consensus 785 ~VlL~St~ag-----g~GlNL~~A~~VI~~D 810 (885)
.|++++.... ..-.++...+.+|+=+
T Consensus 121 ~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE 151 (203)
T cd00268 121 HIVVATPGRLLDLLERGKLDLSKVKYLVLDE 151 (203)
T ss_pred CEEEEChHHHHHHHHcCCCChhhCCEEEEeC
Confidence 6777663211 1125566666666533
No 462
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=27.87 E-value=1.3e+02 Score=25.28 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.6
Q ss_pred cCCCccEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCC
Q 002744 729 RDGSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 767 (885)
Q Consensus 729 ~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 767 (885)
..++.++||||........+...|...|++ +..+.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 345789999998777788889999999998 677888873
No 463
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=29 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=31.5
Q ss_pred hhhhhhhhccccCcCCCCccccCCchhhhhhhhhccc
Q 002744 624 AEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSA 660 (885)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~c~~~~c~~c~~~~~~ 660 (885)
......-|.+|..+..+|++..-||.||..|+.+++.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3444557999999999999999999999999988763
No 464
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.50 E-value=2.7e+02 Score=24.05 Aligned_cols=51 Identities=14% Similarity=-0.015 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhcc----CCCceEEEEecCCCc
Q 002744 745 LDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTE----DPDCKIFLMSLKAGG 795 (885)
Q Consensus 745 l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~----~~~~~VlL~St~agg 795 (885)
...+...|...+++|..++=+++.+.|+.+...-.. ..-++||+-..-+||
T Consensus 19 ~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg 73 (92)
T cd03030 19 QQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGD 73 (92)
T ss_pred HHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeC
Confidence 456778899999999999988899999988877643 234677876655555
No 465
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=27.48 E-value=89 Score=34.10 Aligned_cols=40 Identities=20% Similarity=0.171 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 192 LLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
+-+.|...+..++.. ..+.|++-.+|+|||-.+-+++...
T Consensus 129 ~~~~~~~~L~~~v~~----~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 129 MTEAQASVIRSAIDS----RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCHHHHHHHHHHHHc----CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345666555554442 2467899999999999887766544
No 466
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.40 E-value=87 Score=35.36 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=20.0
Q ss_pred CCCceeeCCCCCChHHHHHHHHHc
Q 002744 211 IRGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 211 ~~ggILADemGlGKTi~aiali~~ 234 (885)
.+|.+|.-+.|+|||..+=+++..
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999998776553
No 467
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.98 E-value=4.1e+02 Score=26.17 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHhC--CCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEec
Q 002744 717 EALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS--GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 717 ~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St 791 (885)
+.+..++... ...+.++-++.....+++.+.+.|+.. |+.++-.+|-.+.++.++++++-+.. +..++++..
T Consensus 35 dl~~~l~~~~--~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s-~~dil~Vgl 108 (177)
T TIGR00696 35 DLMEELCQRA--GKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS-GAGIVFVGL 108 (177)
T ss_pred HHHHHHHHHH--HHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEEc
Confidence 3444444443 223578889999999999999999765 66665568888877777788887764 566776553
No 468
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=26.90 E-value=47 Score=35.37 Aligned_cols=51 Identities=8% Similarity=-0.158 Sum_probs=26.5
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhcccccEEEEeCcCCCCchhhHHHHHHHh
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFL 458 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l~~~~r~lLTGTPi~N~l~eL~~ll~fL 458 (885)
.+|+||||=.-.+-.. + ......+.+...+++--||-..++..+..+++.+
T Consensus 116 ~yD~viID~~~~~~~~-~--l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i 166 (279)
T PRK13230 116 GPDVVIYDILGDVVCG-G--FAMPLQKGLADDVYIVTTCDPMAIYAANNICKGI 166 (279)
T ss_pred CCCEEEEecCCccccC-C--ccccccccccceEEEeccchHHHHHHHHHHHHHH
Confidence 5899999973211100 0 0011122334556666677666666666665544
No 469
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.83 E-value=4.6e+02 Score=27.79 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=28.5
Q ss_pred eecEEEEecccccCCCCcHHHHHHHh----cccc-cEEEEeCcCCCCchhhHHHHHHH
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLA----LESS-YKWALSGTPLQNRVGELYSLVRF 457 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~----l~~~-~r~lLTGTPi~N~l~eL~~ll~f 457 (885)
++++||+|-+=+.-+.. .....+.. .... .-++|++|--.+.+.+....++-
T Consensus 154 ~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 154 RVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred CCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC
Confidence 46899999886553322 22222222 2222 24668888766666665555443
No 470
>PHA02518 ParA-like protein; Provisional
Probab=26.46 E-value=69 Score=32.17 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEe--chhhHHHHHH
Q 002744 219 EMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC--PVAAVTQWVS 275 (885)
Q Consensus 219 emGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~--P~sll~qW~~ 275 (885)
-=|.|||..++.++..+...+ .++|+|- |..-+..|..
T Consensus 9 KGGvGKTT~a~~la~~la~~g-------------------~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADG-------------------HKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCC-------------------CeEEEEeCCCCCChHHHHH
Confidence 348999999988877665422 4667764 6666677864
No 471
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=26.45 E-value=1.2e+02 Score=32.81 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.0
Q ss_pred CCCChHHHHHHHHHcccccc
Q 002744 220 MGMGKTIQAIALVLAKREIR 239 (885)
Q Consensus 220 mGlGKTi~aiali~~~~~~~ 239 (885)
=|+|||=.++.++..+...+
T Consensus 39 GGTGKTP~v~~La~~l~~~G 58 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRG 58 (311)
T ss_pred CCcChHHHHHHHHHHHHHCC
Confidence 47999999999988776543
No 472
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=26.30 E-value=50 Score=35.50 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHHHcccc
Q 002744 220 MGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 220 mGlGKTi~aiali~~~~~ 237 (885)
=|.|||.+++.++..+..
T Consensus 9 GGVGKTTta~nLA~~La~ 26 (290)
T CHL00072 9 GGIGKSTTSCNISIALAR 26 (290)
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 479999999887776654
No 473
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=26.26 E-value=1.6e+02 Score=25.44 Aligned_cols=37 Identities=14% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCccEEEEccChhHHHHHHHHHHhCCCc-EEEEecCCC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKSGVN-CVQLVGSMS 767 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 767 (885)
.+.+++|||+.-.........|...|+. +..++|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 4678999999876777778888888985 667889874
No 474
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=26.07 E-value=31 Score=36.52 Aligned_cols=49 Identities=22% Similarity=0.598 Sum_probs=34.2
Q ss_pred hhhhhhccccCcCCCC---c-cccCCchhhhhhhhhccccccCCCCCCCCCCcc
Q 002744 626 HVQQVCGLCNDLADDP---V-VTNCGHAFCKACLFDSSASKFVAKCPTCSIPLT 675 (885)
Q Consensus 626 ~~~~~~~~~~~~~~~~---~-~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~ 675 (885)
+....|++|.++.+-. + --.||..+|..|....... ....||.|+....
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhcc
Confidence 3344599999776432 2 2368889999998665443 6679999998554
No 475
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.02 E-value=36 Score=35.64 Aligned_cols=33 Identities=36% Similarity=0.870 Sum_probs=26.2
Q ss_pred cccCCchhhhhhhhhccccccCCCCCCCCCCccc
Q 002744 643 VTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTV 676 (885)
Q Consensus 643 ~~~c~~~~c~~c~~~~~~~~~~~~cp~c~~~~~~ 676 (885)
+-.|+|..|..|. +..-..+...||.|...+..
T Consensus 20 in~C~H~lCEsCv-d~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 20 INECGHRLCESCV-DRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred eccccchHHHHHH-HHHHhcCCCCCCcccchhhh
Confidence 4489999999998 44556678899999887654
No 476
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=25.94 E-value=1e+02 Score=36.55 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=31.9
Q ss_pred cccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHc
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLA 234 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~ 234 (885)
.++++-|.+-.+-+.+-+..+ +-||+--.+|+|||+..|...+.
T Consensus 14 y~PYdIQ~~lM~elyrvLe~G-kIgIfESPTGTGKSLSLiCaalt 57 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEG-KIGIFESPTGTGKSLSLICAALT 57 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcC-CeeeeeCCCCCCchHHHHHHHHH
Confidence 457778877666655555554 57899999999999987644433
No 477
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.85 E-value=5.2e+02 Score=29.89 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=57.0
Q ss_pred CccEEEEccChhHHHHHHHHHHhCCCcEEEEecCCCHHHHHHHHHhhccCCCceEEEEecCCCcccc-------cccccC
Q 002744 732 SAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVAL-------NLTVAS 804 (885)
Q Consensus 732 ~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~agg~Gl-------NL~~A~ 804 (885)
+..+||.+..+..+.-....|...|++...+.|..+..++..++.....+ .+++++++........ .+....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~-~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDG-KIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 34789999998887777778888999999999999988888888887554 6788887765433222 334555
Q ss_pred EEEEeC
Q 002744 805 HVFLMD 810 (885)
Q Consensus 805 ~VI~~D 810 (885)
.||+=+
T Consensus 130 ~iViDE 135 (470)
T TIGR00614 130 LIAVDE 135 (470)
T ss_pred EEEEeC
Confidence 555533
No 478
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=25.68 E-value=2.8e+02 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=17.4
Q ss_pred cCCCceeeCCCCCChHHHHHHH
Q 002744 210 AIRGGILADEMGMGKTIQAIAL 231 (885)
Q Consensus 210 ~~~ggILADemGlGKTi~aial 231 (885)
....-||.-.+|.|||-.|-.+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHH
Confidence 3457799999999999877444
No 479
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=25.64 E-value=2.9e+02 Score=31.83 Aligned_cols=95 Identities=12% Similarity=0.155 Sum_probs=57.7
Q ss_pred CcchHHHH-HHHHHHHHHhcCCCccEEEEccChhHHHHHHHHHHh-----CCCcEEEEecCCCHHHHHHHHHhhccCCCc
Q 002744 711 QSSTKIEA-LREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-----SGVNCVQLVGSMSIPARDAAINRFTEDPDC 784 (885)
Q Consensus 711 ~~S~Kl~~-L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 784 (885)
..|+|-.+ ++-++..+.......++||.+..+..+..+.+.+.. .++.+..++|+++...+.+.+. . ++
T Consensus 50 TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~--~~ 124 (460)
T PRK11776 50 TGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---H--GA 124 (460)
T ss_pred CCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---C--CC
Confidence 45778765 334444332222245799999999888877766653 2678888999988765543333 2 45
Q ss_pred eEEEEecCCC-----cccccccccCEEEEeC
Q 002744 785 KIFLMSLKAG-----GVALNLTVASHVFLMD 810 (885)
Q Consensus 785 ~VlL~St~ag-----g~GlNL~~A~~VI~~D 810 (885)
.|++++.... ...++|...+.||+=+
T Consensus 125 ~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 125 HIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred CEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 6677553222 1245666777766533
No 480
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=25.61 E-value=52 Score=34.79 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=15.3
Q ss_pred CCCCCChHHHHHHHHHcccc
Q 002744 218 DEMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 218 DemGlGKTi~aiali~~~~~ 237 (885)
---|.|||.+++.++..+..
T Consensus 9 ~KGGVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 9 GKGGIGKSTTSSNLSAAFAK 28 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 35689999999887766654
No 481
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.43 E-value=6.1e+02 Score=29.84 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=15.6
Q ss_pred eeeCCCCCChHHHHHHHHHcc
Q 002744 215 ILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~ 235 (885)
+|.-..|.|||.++..++..+
T Consensus 354 aLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 345579999999987776544
No 482
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=25.41 E-value=53 Score=33.29 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCCCChHHHHHHHHHcccc
Q 002744 219 EMGMGKTIQAIALVLAKRE 237 (885)
Q Consensus 219 emGlGKTi~aiali~~~~~ 237 (885)
--|.|||.++..++..+.+
T Consensus 8 KGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 8 KGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CCcCcHHHHHHHHHHHHHH
Confidence 6699999998877766654
No 483
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.34 E-value=54 Score=36.93 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=40.9
Q ss_pred ccCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHhc
Q 002744 209 SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFT 281 (885)
Q Consensus 209 ~~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~ 281 (885)
...+|-+|+-+.|.|||+.+.+++.... ..+.=|.|.+|..-|.-|.++..
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~----------------------atff~iSassLtsK~~Ge~eK~v 234 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESG----------------------ATFFNISASSLTSKYVGESEKLV 234 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhc----------------------ceEeeccHHHhhhhccChHHHHH
Confidence 3456778999999999999988887654 35667788899999988887654
No 484
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=25.31 E-value=1.5e+02 Score=24.02 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=37.5
Q ss_pred CEEEEeCCCCCcchHHHHhhhhhhcCCcccEEEEEEEeCCCHHHHHHHH
Q 002744 804 SHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKL 852 (885)
Q Consensus 804 ~~VI~~D~~wnp~~~~QaigR~~RiGQ~k~V~VyrLv~~~TiEe~i~~~ 852 (885)
.+|..++..++|+...||+..|.. |..-++=|+.-.-+.|.||++-..
T Consensus 15 ~rvy~l~e~~Dp~d~~~A~~~a~e-~d~iplGIfY~~~~ptfee~~~~~ 62 (67)
T PF12367_consen 15 ERVYKLDEDHDPSDREAAMEKARE-GDKIPLGIFYRNERPTFEERLPEL 62 (67)
T ss_pred HheEECCCCCCchhHHHHHHHHHh-cCCceEEEEEeCCCCCHHHHhhhh
Confidence 456667789999999999999977 666676666556689999987554
No 485
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.27 E-value=1.4e+02 Score=30.96 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.6
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
..+++-+.|+|||+.++-++....
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~ 46 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGL 46 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 347799999999999988877654
No 486
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.13 E-value=78 Score=32.72 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=25.8
Q ss_pred CCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEe--chhhHHHHHH
Q 002744 220 MGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVIC--PVAAVTQWVS 275 (885)
Q Consensus 220 mGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~--P~sll~qW~~ 275 (885)
=|.|||.+++.++..+...+ ++++||- |..-+..|..
T Consensus 11 GGvGKTT~a~nLA~~la~~G-------------------~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDG-------------------KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhCC-------------------CcEEEEeCCCCCCHHHHHH
Confidence 38999999988877765432 3666664 5556678865
No 487
>PF12622 NpwBP: mRNA biogenesis factor
Probab=25.08 E-value=36 Score=25.54 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=9.5
Q ss_pred EEEeCCCCCcc
Q 002744 806 VFLMDPWWNPA 816 (885)
Q Consensus 806 VI~~D~~wnp~ 816 (885)
=|+|||.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 48999999994
No 488
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=25.02 E-value=2e+02 Score=32.75 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=17.4
Q ss_pred eeeCCCCCChHHHHHHHHHccc
Q 002744 215 ILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~~ 236 (885)
.++--.|+|||-++..++..+.
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4566899999999987776654
No 489
>PRK04296 thymidine kinase; Provisional
Probab=24.91 E-value=69 Score=31.91 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=22.1
Q ss_pred eecEEEEecccccCCCCcHHHHHHHhc-ccccEEEEeC
Q 002744 405 KWERIILDEAHFIKDRRSNTAKAVLAL-ESSYKWALSG 441 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~~~~~~~~l-~~~~r~lLTG 441 (885)
++++|||||+|.+... .....+..+ .....+++||
T Consensus 78 ~~dvviIDEaq~l~~~--~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 78 KIDCVLIDEAQFLDKE--QVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred CCCEEEEEccccCCHH--HHHHHHHHHHHcCCeEEEEe
Confidence 5789999999988432 233344443 3444577776
No 490
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=24.89 E-value=1.5e+02 Score=33.76 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.1
Q ss_pred ceeeCCCCCChHHHHHHHHHccc
Q 002744 214 GILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 214 gILADemGlGKTi~aiali~~~~ 236 (885)
.+++-..|.|||.++.-++..+.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 47888999999999988877653
No 491
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.85 E-value=3.9e+02 Score=26.05 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=46.7
Q ss_pred CCccEEEEccChhHHHHHHHHHHhC--CCcEE-EEecCCCHHHHHHHHHhhccCCCceEEEEecC
Q 002744 731 GSAKGIVFSQFTSFLDLINYSLHKS--GVNCV-QLVGSMSIPARDAAINRFTEDPDCKIFLMSLK 792 (885)
Q Consensus 731 ~~~KvIIFsq~~~~l~~L~~~L~~~--gi~~~-~i~G~~~~~~R~~~i~~F~~~~~~~VlL~St~ 792 (885)
.+.++-++......++.+...|... ++.++ ..+|..+..+..++++..+.. ++.++++...
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~-~pdiv~vglG 110 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS-GPDIVFVGLG 110 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEECC
Confidence 3578999999999999999999876 55555 355667778888899988875 6677776643
No 492
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=24.77 E-value=43 Score=43.90 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=68.1
Q ss_pred EEEccChhHHHHHHHHHHhCC-CcEEEEecCCC-----------HHHHHHHHHhhccCCCceEEEEecCCCccccccccc
Q 002744 736 IVFSQFTSFLDLINYSLHKSG-VNCVQLVGSMS-----------IPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVA 803 (885)
Q Consensus 736 IIFsq~~~~l~~L~~~L~~~g-i~~~~i~G~~~-----------~~~R~~~i~~F~~~~~~~VlL~St~agg~GlNL~~A 803 (885)
|||+....+.-.+.+.+.... .....++|.+. .-.+.+.+..|... .+++|+ .|.+.-+|+++..|
T Consensus 296 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~-~ln~L~-~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 296 IIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH-ELNLLI-ATSVLEEGVDVPKC 373 (1606)
T ss_pred eeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-hhhHHH-HHHHHHhhcchhhh
Confidence 888888877766666665432 22333556532 11245677777764 788777 56899999999999
Q ss_pred CEEEEeCCCCCcchHHHHhhhhhhcCC
Q 002744 804 SHVFLMDPWWNPAVEQQAQDRIHRIGQ 830 (885)
Q Consensus 804 ~~VI~~D~~wnp~~~~QaigR~~RiGQ 830 (885)
+-|++++.+-+-..+.|+.||+.+.+-
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~~ 400 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAADS 400 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccchh
Confidence 999999999899999999999877654
No 493
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.71 E-value=1.4e+02 Score=30.88 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=19.3
Q ss_pred CceeeCCCCCChHHHHHHHHHccc
Q 002744 213 GGILADEMGMGKTIQAIALVLAKR 236 (885)
Q Consensus 213 ggILADemGlGKTi~aiali~~~~ 236 (885)
-.++.-+.|+|||..++.++....
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 447888999999999887777553
No 494
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=24.66 E-value=1.3e+02 Score=30.74 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.3
Q ss_pred eeeCCCCCChHHHHHHHHHcc
Q 002744 215 ILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 215 ILADemGlGKTi~aiali~~~ 235 (885)
+++-+.|+|||..+..++...
T Consensus 24 ~i~G~~G~GKT~l~~~~~~~~ 44 (229)
T TIGR03881 24 AVTGEPGTGKTIFCLHFAYKG 44 (229)
T ss_pred EEECCCCCChHHHHHHHHHHH
Confidence 678899999999988776543
No 495
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=24.66 E-value=1.5e+02 Score=32.96 Aligned_cols=60 Identities=20% Similarity=0.146 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHHHHhhhc-cCCCceeeCCCCCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhH
Q 002744 192 LLRYQKEWLAWALKQEES-AIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAV 270 (885)
Q Consensus 192 L~~yQ~~~v~~l~~~~~~-~~~ggILADemGlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll 270 (885)
|-+-|+..+..++..... ......|.-.-|+|||...=++....... .+.+++++|..+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-------------------~~~~~~~a~tg~A 62 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-------------------GKKVLVTAPTGIA 62 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-------------------cceEEEecchHHH
Confidence 567799988887665543 22344677788999999876665554331 1578999998653
No 496
>PRK10436 hypothetical protein; Provisional
Probab=24.57 E-value=1.1e+02 Score=35.42 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHHHHhhhccCCCceeeCCCCCChHHHHHHHHHcc
Q 002744 191 PLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 191 ~L~~yQ~~~v~~l~~~~~~~~~ggILADemGlGKTi~aiali~~~ 235 (885)
.+-+.|.+.+.+++.. ..+-.+++-.+|+|||-+..+++...
T Consensus 201 G~~~~~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhh
Confidence 3567777777776654 11224579999999999887766554
No 497
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.56 E-value=85 Score=34.65 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHcccccccccCCCCCCCCCCCCCCCCCcEEEEechhhHHHHHHHHHHhcCCCCceEEEEeCCCcccch
Q 002744 221 GMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA 300 (885)
Q Consensus 221 GlGKTi~aiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~sll~qW~~Ei~k~~~~~~~~v~v~~g~~~~~~~ 300 (885)
|.|||-+..-++.++...+ ..+++||--+-..--.+.++.+.-.....++..+.....-..
T Consensus 111 G~GKTTtc~KlA~y~kkkG-------------------~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~i 171 (483)
T KOG0780|consen 111 GSGKTTTCTKLAYYYKKKG-------------------YKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKI 171 (483)
T ss_pred CCCcceeHHHHHHHHHhcC-------------------CceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHH
Q ss_pred hhh-------cCCCEEEecch
Q 002744 301 KQF-------SEFDFVITTYS 314 (885)
Q Consensus 301 ~~l-------~~~dvvItty~ 314 (885)
... ..+|+||+..+
T Consensus 172 a~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 172 ASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHHHHHhcCCcEEEEeCC
No 498
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=1.4e+02 Score=32.15 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.1
Q ss_pred CCceeeCCCCCChHHHHHHHHHcc
Q 002744 212 RGGILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 212 ~ggILADemGlGKTi~aiali~~~ 235 (885)
.|++|.-..|.|||+++=+++...
T Consensus 167 kg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 167 KGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred ceeEEeCCCCCchhHHHHHHHHhc
Confidence 588999999999999997766554
No 499
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=24.55 E-value=87 Score=34.58 Aligned_cols=46 Identities=22% Similarity=0.137 Sum_probs=32.3
Q ss_pred cccHHHHHHHHHHHHHhhhccCCC-ceeeCCCCCChHHHHHHHHHcc
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRG-GILADEMGMGKTIQAIALVLAK 235 (885)
Q Consensus 190 ~~L~~yQ~~~v~~l~~~~~~~~~g-gILADemGlGKTi~aiali~~~ 235 (885)
...|.+|...+.-++......... .+|--..|+|||...-.++...
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc
Confidence 347899998887776543332222 2677889999999888776654
No 500
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=24.40 E-value=4.6e+02 Score=29.63 Aligned_cols=53 Identities=15% Similarity=0.269 Sum_probs=33.6
Q ss_pred eecEEEEecccccCCCCcH---HHHHHHhcc-cccEEEEeC--cCCCCc--hhhHHHHHHH
Q 002744 405 KWERIILDEAHFIKDRRSN---TAKAVLALE-SSYKWALSG--TPLQNR--VGELYSLVRF 457 (885)
Q Consensus 405 ~w~~vIlDEaH~ikn~~s~---~~~~~~~l~-~~~r~lLTG--TPi~N~--l~eL~~ll~f 457 (885)
..++|++|-.|.+.+.... .+..+..+. ....++||+ +|-.-+ ..+|.+-+.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 3578999999999887433 333334443 334899998 665432 3467766654
Done!