Query 002744
Match_columns 885
No_of_seqs 279 out of 2001
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 18:20:04 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002744.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1459-1463//hhsearch_pdb/002744hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 1.0 1 1 658.1 37.8 482 184-884 228-731 (800)
2 1z3i_X Similar to RAD54-like; 1.0 1 1 649.9 39.4 502 183-884 47-569 (644)
3 1z63_A Helicase of the SNF2/RA 1.0 1 1 599.9 37.5 463 185-884 31-494 (500)
4 3dmq_A RNA polymerase-associat 1.0 1 1 445.7 27.8 468 187-871 149-643 (968)
5 1wp9_A ATP-dependent RNA helic 1.0 1 1 381.2 33.9 448 190-861 8-493 (494)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 347.4 31.2 474 189-864 246-769 (936)
7 1z5z_A Helicase of the SNF2/RA 1.0 1 1 340.9 21.4 255 527-884 10-265 (271)
8 4a2q_A RIG-I, retinoic acid in 1.0 1 1 340.8 32.5 470 189-865 246-770 (797)
9 2fwr_A DNA repair protein RAD2 1.0 1 1 338.9 19.1 377 189-859 91-470 (472)
10 4a2p_A RIG-I, retinoic acid in 1.0 1 1 328.3 29.7 499 190-880 6-540 (556)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=658.07 Aligned_cols=482 Identities=26% Similarity=0.441 Sum_probs=384.5
Q ss_pred CCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9963-224347999999999999664369992553799999699999999803112265687778888877878998299
Q 002744 184 DPPD-LITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATL 262 (885)
Q Consensus 184 ~p~~-~~~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 262 (885)
+|+. ....|+|||++|++||+..+..+ +||||||+||||||+|+|+++..+..... ..+|+|
T Consensus 228 ~p~~~~~~~Lr~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai~~i~~l~~~~~----------------~~~~~L 290 (800)
T 3mwy_W 228 QPPFIKGGELRDFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTVAFISWLIFARR----------------QNGPHI 290 (800)
T ss_dssp CCTTCCSSCCCTHHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHHHHHHHHHHHHS----------------CCSCEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHHCC----------------CCCCEE
T ss_conf 9986579975899999999999985138-99899827875329999999999998607----------------799889
Q ss_pred EEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCH--------------HHHCCCCEEEECCHHHHHHHHHCCCCCC
Q ss_conf 99260159999999988139998369999599864661--------------0104877999631235885531049985
Q 002744 263 VICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSA--------------KQFSEFDFVITTYSIIEADYRKHVMPPK 328 (885)
Q Consensus 263 IV~P~sll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~~~--------------~~l~~~dvvItTy~~l~~~~~~~~~~~~ 328 (885)
||||.+++.||.+||.+|+| .+.+.+|+|....+.. .....++|+|+||+++......
T Consensus 291 IV~P~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~------ 362 (800)
T 3mwy_W 291 IVVPLSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE------ 362 (800)
T ss_dssp EECCTTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH------
T ss_pred EEECCHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHH------
T ss_conf 99880389999999999779--9649998277777889888776226300134456678899069999864999------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECE
Q ss_conf 32233675320134666531016986124446559998621034336889987898778898778899999974420039
Q 002744 329 QKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWER 408 (885)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~ 408 (885)
+..+.|++
T Consensus 363 ------------------------------------------------------------------------l~~~~w~~ 370 (800)
T 3mwy_W 363 ------------------------------------------------------------------------LGSIKWQF 370 (800)
T ss_dssp ------------------------------------------------------------------------HHTSEEEE
T ss_pred ------------------------------------------------------------------------HHCCCCCE
T ss_conf ------------------------------------------------------------------------83377325
Q ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99814601489884799999842146099984767878533479999972458787422346665445667888999999
Q 002744 409 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPH 488 (885)
Q Consensus 409 vIiDEaH~ikn~~S~~~~~l~~l~~~~RllLTGTPi~N~l~eL~sll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (885)
||+||||++||..+..++++..+.+.+||+|||||++|++.|||++++||.|..+....
T Consensus 371 vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~--------------------- 429 (800)
T 3mwy_W 371 MAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQ--------------------- 429 (800)
T ss_dssp EEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC-------------------------
T ss_pred EEHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHH---------------------
T ss_conf 64134444147101999999975224389722785779999999999985866367434---------------------
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 98301345543203521014888414679999999984576433326876655689970788860689989999999999
Q 002744 489 NSVRHFCWWNRYVATPIQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLY 568 (885)
Q Consensus 489 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~~~y~~l~ 568 (885)
. |. +. ............++.+++++++||++.++... +|++.+.++.+.+++.|+.+|..+.
T Consensus 430 ----~---~~------~~---~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~--LP~k~~~~v~v~ls~~q~~~Y~~i~ 491 (800)
T 3mwy_W 430 ----E---ID------FE---NQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS--LPSKTERILRVELSDVQTEYYKNIL 491 (800)
T ss_dssp ---------------------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT--SCCEEEEEEEECCCHHHHHHHHHHH
T ss_pred ----H---HC------CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf ----4---23------22---23146899999999997577753208766431--6882799997079999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999997506556624579999999997505965301111212358771333344645043557688984346881
Q 002744 569 SESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGH 648 (885)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~c~~ 648 (885)
......+.... ......++..++.||++|+||+++.............
T Consensus 492 ~~~~~~l~~~~-----~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~--------------------------- 539 (800)
T 3mwy_W 492 TKNYSALTAGA-----KGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGD--------------------------- 539 (800)
T ss_dssp HHCCC---------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-----------------------------
T ss_pred HHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHCCC---------------------------
T ss_conf 99999986103-----5454469999999998735865423557899886156---------------------------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11044452101364677899989884334556678788886442367776001321001236830589999999999883
Q 002744 649 AFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVE 728 (885)
Q Consensus 649 ~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~lL~~~~~ 728 (885)
. ........ ......|+|+..|.++|..+.
T Consensus 540 ------------------------------------~---------~~~~~~~~----~~l~~~s~K~~~L~~lL~~~~- 569 (800)
T 3mwy_W 540 ------------------------------------G---------KMTRENVL----RGLIMSSGKMVLLDQLLTRLK- 569 (800)
T ss_dssp -----------------------------------------------CCSHHHH----HHHHHTCHHHHHHHHHHHHHT-
T ss_pred ------------------------------------C---------CCCHHHHH----HHHHHCCHHHHHHHHHHHHHH-
T ss_conf ------------------------------------6---------55577888----876642769999999999975-
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCC-CCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 08996199991671489999999883899289983388999999999841169-99359998458874212334559899
Q 002744 729 RDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTED-PDCKIFLMSLKAGGVALNLTVASHVF 807 (885)
Q Consensus 729 ~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~VlLlSt~agg~GLNL~~A~~VI 807 (885)
..++||||||||+.++++|+.+|...|+++.+++|+++..+|++++++|+++ ....|||+||++||+||||+.|++||
T Consensus 570 -~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 570 -KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp -TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred -HCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEE
T ss_conf -2798189996359999999999986799789996999999999999996089998259997454456787760163689
Q ss_pred EECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCHHHHHH
Q ss_conf 96899991647899564350499665999999848979999999999999987211179820------015888999985
Q 002744 808 LMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSAD------AFGKLTEADMRF 881 (885)
Q Consensus 808 ~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~l~~~~~------~~~~~~~~~~~~ 881 (885)
+||++|||..+.||+||+||+||+++|+||+|+++||+||+|++++.+|..+..+++++... .-..++.+++..
T Consensus 649 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ 728 (800)
T 3mwy_W 649 IFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSA 728 (800)
T ss_dssp ESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 94687881168999999885589863799998619989999999999988899999703756653211234789999999
Q ss_pred HHC
Q ss_conf 114
Q 002744 882 LFV 884 (885)
Q Consensus 882 lf~ 884 (885)
|+.
T Consensus 729 ll~ 731 (800)
T 3mwy_W 729 ILK 731 (800)
T ss_dssp HHS
T ss_pred HHH
T ss_conf 997
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=649.86 Aligned_cols=502 Identities=26% Similarity=0.332 Sum_probs=395.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH----CCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99963224347999999999999664----36999255379999969999999980311226568777888887787899
Q 002744 183 EDPPDLITPLLRYQKEWLAWALKQEE----SAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGI 258 (885)
Q Consensus 183 ~~p~~~~~~L~pyQ~~gv~wl~~~~~----~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (885)
..++.+...|+|||++|+.||..... ...+||||||+||||||+|+|+++..+...... ..+..
T Consensus 47 ~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~------------~~p~~ 114 (644)
T 1z3i_X 47 VVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD------------CKPEI 114 (644)
T ss_dssp ECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT------------SSCSC
T ss_pred EECHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC------------CCCCC
T ss_conf 518564003519999999999984233544588875961078742999999999999974866------------56777
Q ss_pred CCEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH----------HCCCCEEEECCHHHHHHHHHCCCCCC
Q ss_conf 82999926015999999998813999836999959986466101----------04877999631235885531049985
Q 002744 259 KATLVICPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQ----------FSEFDFVITTYSIIEADYRKHVMPPK 328 (885)
Q Consensus 259 ~~~LIV~P~sll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~~~~~----------l~~~dvvItTy~~l~~~~~~~~~~~~ 328 (885)
+++|||||.+++.||.+|+.+|++. ...++.+++..+...... ...++|+|+||+++....
T Consensus 115 ~~~LiV~P~sll~qW~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~-------- 185 (644)
T 1z3i_X 115 DKVIVVSPSSLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA-------- 185 (644)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--------
T ss_pred CCEEEEECHHHHHHHHHHHHHHCCC-CEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH--------
T ss_conf 8579996589988799999997588-7259998089889999999999873377778757996389987657--------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECE
Q ss_conf 32233675320134666531016986124446559998621034336889987898778898778899999974420039
Q 002744 329 QKCQYCGKSFYQKKLVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWER 408 (885)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~ 408 (885)
..+....|++
T Consensus 186 ----------------------------------------------------------------------~~l~~~~~~~ 195 (644)
T 1z3i_X 186 ----------------------------------------------------------------------EVLHKGKVGL 195 (644)
T ss_dssp ----------------------------------------------------------------------TTTTTSCCCE
T ss_pred ----------------------------------------------------------------------HHHHCCCCCE
T ss_conf ----------------------------------------------------------------------8750488657
Q ss_pred EEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99814601489884799999842146099984767878533479999972458787422346665445667888999999
Q 002744 409 IILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPH 488 (885)
Q Consensus 409 vIiDEaH~ikn~~S~~~~~l~~l~~~~RllLTGTPi~N~l~eL~sll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (885)
||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||.|.+++
T Consensus 196 vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~------------------------ 251 (644)
T 1z3i_X 196 VICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILG------------------------ 251 (644)
T ss_dssp EEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHC------------------------
T ss_pred EEEECCEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC------------------------
T ss_conf 99878622478045999999855567379984673458899999999861887689------------------------
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 9830134554320352101488841------4679999999984576433326876655689970788860689989999
Q 002744 489 NSVRHFCWWNRYVATPIQTHGNSYG------GRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREAD 562 (885)
Q Consensus 489 ~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~~ 562 (885)
.+..|.+.|..|+..+..... ........++.++.++++||++.++..+ +|++.+.++.+.+++.|+.
T Consensus 252 ----~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~--LP~k~~~~v~~~ls~~q~~ 325 (644)
T 1z3i_X 252 ----TAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKY--LPVKIEQVVCCNLTPLQKE 325 (644)
T ss_dssp ----CHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGT--SCCEEEEEEEECCCHHHHH
T ss_pred ----CHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEEECCCHHHHH
T ss_conf ----9999998632615416776778889999999999999998899987108767642--7983699998379989999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999999997506556624579999999997505965301111212358771333344645043557688984
Q 002744 563 YYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPV 642 (885)
Q Consensus 563 ~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 642 (885)
+|+.+....... ............+..++.||++|+||.++.........+ .+.
T Consensus 326 lY~~~~~~~~~~-----~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~-------------------~~~-- 379 (644)
T 1z3i_X 326 LYKLFLKQAKPV-----ESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEG-------------------FDG-- 379 (644)
T ss_dssp HHHHHHHHHCGG-----GSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTT-------------------CTT--
T ss_pred HHHHHHHHHHHH-----HHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCH-------------------HHH--
T ss_conf 999999989999-----987627621459999999999957999888887415400-------------------355--
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 34688111044452101364677899989884334556678788886442367776001321001236830589999999
Q 002744 643 VTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREE 722 (885)
Q Consensus 643 ~~~c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~l 722 (885)
++ ...|. .. .. .......|+|+..|..+
T Consensus 380 -----------~~---------~~~~~-----------~~---------~~------------~~~~~~~s~K~~~l~~l 407 (644)
T 1z3i_X 380 -----------AL---------DLFPQ-----------NY---------ST------------KAVEPQLSGKMLVLDYI 407 (644)
T ss_dssp -----------GG---------GTSCS-----------SC---------CS------------SSCCGGGSHHHHHHHHH
T ss_pred -----------HH---------HHCCC-----------CC---------CC------------CCCCCCCCHHHHHHHHH
T ss_conf -----------77---------64542-----------11---------10------------00570117489999999
Q ss_pred HHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCCC
Q ss_conf 9998830899619999167148999999988389928998338899999999984116999-359998458874212334
Q 002744 723 IRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPD-CKIFLMSLKAGGVALNLT 801 (885)
Q Consensus 723 L~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~-~~VlLlSt~agg~GLNL~ 801 (885)
+..+.. .+++|+||||+++.++++|+.+|...|+++.+++|+++..+|++++++|++++. ..|||+||++||+||||+
T Consensus 408 l~~~~~-~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~ 486 (644)
T 1z3i_X 408 LAMTRT-TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLI 486 (644)
T ss_dssp HHHHHH-HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCT
T ss_pred HHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 999864-6998799998059999999999997799789983999999999999996399999679998445566784652
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
Q ss_conf 55989996899991647899564350499665999999848979999999999999987211179820015888999985
Q 002744 802 VASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRF 881 (885)
Q Consensus 802 ~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~ 881 (885)
.|++||+||++|||+.+.||+||+||+||+++|+||+|++.||+||+|++++..|+.+++.++++.......++.+|++.
T Consensus 487 ~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~ 566 (644)
T 1z3i_X 487 GANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRE 566 (644)
T ss_dssp TEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHH
T ss_conf 38989997999981379999884032289872699998879889999999999999999998568605433789999999
Q ss_pred HHC
Q ss_conf 114
Q 002744 882 LFV 884 (885)
Q Consensus 882 lf~ 884 (885)
||.
T Consensus 567 Lf~ 569 (644)
T 1z3i_X 567 LFS 569 (644)
T ss_dssp HTC
T ss_pred HHC
T ss_conf 867
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=1.00 E-value=1 Score=599.87 Aligned_cols=463 Identities=30% Similarity=0.505 Sum_probs=391.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 96322434799999999999966436999255379999969999999980311226568777888887787899829999
Q 002744 185 PPDLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVI 264 (885)
Q Consensus 185 p~~~~~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV 264 (885)
|..+...|+|||.+++.|+......+ +|+||||+||+|||+++++++....... ..+++|||
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i~~~~~~~-----------------~~~~~LIv 92 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVFSDAKKEN-----------------ELTPSLVI 92 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHHHHHHHTT-----------------CCSSEEEE
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHHCC-----------------CCCCEEEE
T ss_conf 83320033699999999999974179-9889980899738999999999887558-----------------99978999
Q ss_pred ECHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 26015999999998813999836999959986466101048779996312358855310499853223367532013466
Q 002744 265 CPVAAVTQWVSEINRFTSVGSTKVLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLV 344 (885)
Q Consensus 265 ~P~sll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~~~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (885)
||.+++.||.+|+.+|++ ..++.+++|.... .....++|+|+||+++.....
T Consensus 93 ~P~~l~~qw~~e~~~~~~--~~~v~~~~g~~~~---~~~~~~~ivi~t~~~l~~~~~----------------------- 144 (500)
T 1z63_A 93 CPLSVLKNWEEELSKFAP--HLRFAVFHEDRSK---IKLEDYDIILTTYAVLLRDTR----------------------- 144 (500)
T ss_dssp ECSTTHHHHHHHHHHHCT--TSCEEECSSSTTS---CCGGGSSEEEEEHHHHTTCHH-----------------------
T ss_pred CCHHHHHHHHHHHHHHCC--CCEEEEEECCCHH---CCCCCCCEEEEEHHHHHCCCH-----------------------
T ss_conf 038999999999999779--9559997267021---003577689963799726302-----------------------
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCHH
Q ss_conf 65310169861244465599986210343368899878987788987788999999744200399981460148988479
Q 002744 345 VHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNT 424 (885)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~S~~ 424 (885)
+....|++||+||||+++|..+..
T Consensus 145 --------------------------------------------------------l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 145 --------------------------------------------------------LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp --------------------------------------------------------HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred --------------------------------------------------------HCCCCCCEEEEECCCCCCCHHHHH
T ss_conf --------------------------------------------------------117872879980841017876899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 99998421460999847678785334799999724587874223466654456678889999999830134554320352
Q 002744 425 AKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 504 (885)
Q Consensus 425 ~~~l~~l~~~~RllLTGTPi~N~l~eL~sll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (885)
++++..+.+++||+|||||++|++.|||++++||.+.++. .+..|...+..|
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~----------------------------~~~~f~~~~~~~ 220 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLG----------------------------SYSEFKSKFATP 220 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTC----------------------------CHHHHHTTTHHH
T ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCC----------------------------CHHHHHHHHCCC
T ss_conf 9999960047189974677779999999999985877579----------------------------989999985251
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10148884146799999999845764333268766556899707888606899899999999999999999999750655
Q 002744 505 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 584 (885)
Q Consensus 505 i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~~~y~~l~~~~~~~~~~~~~~~~~ 584 (885)
+..+.. .....++.++.++++||++.+......+|++.+..+.+++++.++..|+.+.......+. ....
T Consensus 221 ~~~~~~------~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~----~~~~ 290 (500)
T 1z63_A 221 IKKGDN------MAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTG 290 (500)
T ss_dssp HHTTCH------HHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTT----TCCT
T ss_pred CCCCCH------HHHHHHHHHHHHHEEEECCCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH----HHHC
T ss_conf 114668------899999999766745502554241122999758999818999999999999999999998----6423
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 66245799999999975059653011112123587713333446450435576889843468811104445210136467
Q 002744 585 MNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFV 664 (885)
Q Consensus 585 ~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~ 664 (885)
......++..+.++|++|+||.++...
T Consensus 291 ~~~~~~~~~~l~~lr~~~~~p~l~~~~----------------------------------------------------- 317 (500)
T 1z63_A 291 IKRKGMILSTLLKLKQIVDHPALLKGG----------------------------------------------------- 317 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHCS-----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHHCCC-----------------------------------------------------
T ss_conf 210679999999999881799884385-----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHH
Q ss_conf 78999898843345566787888864423677760013210012368305899999999998830899619999167148
Q 002744 665 AKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSF 744 (885)
Q Consensus 665 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~ 744 (885)
......++|+..+.+++..... .++|+|||++++.+
T Consensus 318 ------------------------------------------~~~~~~s~K~~~l~~~l~~~~~--~~~k~lvF~~~~~~ 353 (500)
T 1z63_A 318 ------------------------------------------EQSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDM 353 (500)
T ss_dssp ------------------------------------------CCCSTTCHHHHHHHHHHHHHHT--TTCCEEEECSCHHH
T ss_pred ------------------------------------------CCHHHCCHHHHHHHHHHHHHHC--CCCCEEEEEEHHHH
T ss_conf ------------------------------------------2011115529999999999872--68868999721889
Q ss_pred HHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99999998838-99289983388999999999841169993599984588742123345598999689999164789956
Q 002744 745 LDLINYSLHKS-GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQD 823 (885)
Q Consensus 745 l~~L~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~Qaig 823 (885)
++.++..|... |+++..++|+++..+|++++++|++++...|+|+|++++++|+||+.|++||+||++|||..+.|++|
T Consensus 354 ~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~g 433 (500)
T 1z63_A 354 GKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATD 433 (500)
T ss_dssp HHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHH
T ss_conf 99999999885388769997999999999999996089998779995333557774455888999589989545899999
Q ss_pred HHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 4350499665999999848979999999999999987211179820015888999985114
Q 002744 824 RIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 884 (885)
Q Consensus 824 Ri~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~lf~ 884 (885)
|++|+||+++|+||+|++++|+||+|++++..|..+++.++++......+++.+|++.||.
T Consensus 434 R~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 494 (500)
T 1z63_A 434 RVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 494 (500)
T ss_dssp TTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHS
T ss_pred HHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHC
T ss_conf 8887389870699997748989999999999999999998606850211599999999964
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=445.72 Aligned_cols=468 Identities=19% Similarity=0.228 Sum_probs=315.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 32243479999999999996643699925537999996999999998031122656877788888778789982999926
Q 002744 187 DLITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICP 266 (885)
Q Consensus 187 ~~~~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P 266 (885)
.....|+|||++++.|++... ..++||||+||+|||+++++++........ .+++|||||
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~---~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-----------------~~rvLIVvP 208 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH---APRVLLADEVGLGKTIEAGMILHQQLLSGA-----------------AERVLIIVP 208 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS---SCEEEECCCTTSCHHHHHHHHHHHHHHTSS-----------------CCCEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHHHHHHCC-----------------CCEEEEEEC
T ss_conf 789997099999999999705---898898789997599999999999998189-----------------982999957
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC----CHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 01599999999881399983699995998646----61010487799963123588553104998532233675320134
Q 002744 267 VAAVTQWVSEINRFTSVGSTKVLIYHGSNRER----SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKK 342 (885)
Q Consensus 267 ~sll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~----~~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (885)
.+|+.||..|+.+++. +++.+++|..... ....+..++|+|+||+++......
T Consensus 209 ~sLl~Qw~~E~~~~f~---l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-------------------- 265 (968)
T 3dmq_A 209 ETLQHQWLVEMLRRFN---LRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-------------------- 265 (968)
T ss_dssp TTTHHHHHHHHHHHSC---CCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--------------------
T ss_pred HHHHHHHHHHHHHHHC---CCEEEECCCHHHHHHHHCCCCCCCCCEEEECHHHHHHCHHH--------------------
T ss_conf 8889999999999869---98799806205554320036445689899768998648788--------------------
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCC
Q ss_conf 66653101698612444655999862103433688998789877889877889999997442003999814601489884
Q 002744 343 LVVHLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRS 422 (885)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~S 422 (885)
...+....|++||+||||+++|..+
T Consensus 266 -------------------------------------------------------~~~l~~~~~dlVIvDEAH~~kn~~~ 290 (968)
T 3dmq_A 266 -------------------------------------------------------LEHLCEAEWDLLVVDEAHHLVWSED 290 (968)
T ss_dssp -------------------------------------------------------THHHHTSCCCEEEECCSSCCCCBTT
T ss_pred -------------------------------------------------------HHHHHHCCCCEEEEHHHHHHCCCCC
T ss_conf -------------------------------------------------------8876415877897444676258887
Q ss_pred H---HHHHHHHC--CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-------CCCCC--CCCCCCCCC
Q ss_conf 7---99999842--1460999847678785334799999724587874223466654-------45667--888999999
Q 002744 423 N---TAKAVLAL--ESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCK-------VLDYS--SAECPNCPH 488 (885)
Q Consensus 423 ~---~~~~l~~l--~~~~RllLTGTPi~N~l~eL~sll~fL~~~~~~~~~~~~~~~~-------~~~~~--~~~~~~~~~ 488 (885)
. .++.+..+ .++++|+|||||++|++.|+|++++|+.+..+..+........ ..... .........
T Consensus 291 ~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 370 (968)
T 3dmq_A 291 APSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDEL 370 (968)
T ss_dssp BCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGT
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 54299999999862578589997687669879999999825930118989999999857889999998742678998899
Q ss_pred CCCCHHHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHH-----HHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHH
Q ss_conf 9830134554320352101488--8414679999999984-----57643332687665568997078886068998999
Q 002744 489 NSVRHFCWWNRYVATPIQTHGN--SYGGRRAMILLKHKVL-----RSVILRRTKKGRAADLALPPRIVSLRRDSLDIREA 561 (885)
Q Consensus 489 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~ll-----~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~ 561 (885)
..+... +......++..... ...........+..++ ...++|+++..+. .+|.+....+.+.+++..+
T Consensus 371 ~~L~~~--l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~---~~p~r~~~~~~l~~~~~~~ 445 (968)
T 3dmq_A 371 NMLGEM--IGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK---GFPKRELHTIKLPLPTQYQ 445 (968)
T ss_dssp TSSTTT--TCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC---CCCCCCCCEEEECCCHHHH
T ss_pred HHHHHH--HCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC---CCCHHHEEEEECCCCHHHH
T ss_conf 999988--42033678875036222333799999999999861733265632265545---5671115752368999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99999999999999999750655662457999999999750596530111121235877133334464504355768898
Q 002744 562 DYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 641 (885)
Q Consensus 562 ~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 641 (885)
..|...... ........ . ...+.+|.....
T Consensus 446 ~~~~~~~~~---------~~~~~~~~--~--------~~~~l~pe~~~~------------------------------- 475 (968)
T 3dmq_A 446 TAIKVSGIM---------GARKSAED--R--------ARDMLYPERIYQ------------------------------- 475 (968)
T ss_dssp HHHHHHHHT---------TCCSSGGG--G--------THHHHCSGGGTT-------------------------------
T ss_pred HHHHHHHHH---------HHHHHHHH--H--------HHHHCCHHHHHH-------------------------------
T ss_conf 999987543---------02126677--7--------764108598998-------------------------------
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 43468811104445210136467789998988433455667878888644236777600132100123683058999999
Q 002744 642 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALRE 721 (885)
Q Consensus 642 ~~~~c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~ 721 (885)
. +..........++|+..|.+
T Consensus 476 ---------------------------------------~--------------------l~~~~~~~~~~~~K~~~L~~ 496 (968)
T 3dmq_A 476 ---------------------------------------E--------------------FEGDNATWWNFDPRVEWLMG 496 (968)
T ss_dssp ---------------------------------------T--------------------TTSSSCCTTTTSHHHHHHHH
T ss_pred ---------------------------------------H--------------------HHHHHHCCCCCCHHHHHHHH
T ss_conf ---------------------------------------7--------------------64333135685679999999
Q ss_pred HHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCC
Q ss_conf 999988308996199991671489999999883-8992899833889999999998411699-93599984588742123
Q 002744 722 EIRFMVERDGSAKGIVFSQFTSFLDLINYSLHK-SGVNCVQLVGSMSIPARDAAINRFTEDP-DCKIFLMSLKAGGVALN 799 (885)
Q Consensus 722 lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~VlLlSt~agg~GLN 799 (885)
++.. .++.|+||||+++.+++.|+..|.. .|+++..++|+++..+|..+++.|+++. .++||+ +|.++++|+|
T Consensus 497 ll~~----~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~GlD 571 (968)
T 3dmq_A 497 YLTS----HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSEGRN 571 (968)
T ss_dssp HHHH----TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTCSSC
T ss_pred HHHH----CCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEE-ECCHHHCCCC
T ss_conf 9983----7999789996959999999999998749838998499999999999999747997630898-5334316888
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 345598999689999164789956435049966599999984897999999999999998721117982001
Q 002744 800 LTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAF 871 (885)
Q Consensus 800 L~~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~l~~~~~~~ 871 (885)
++.|++||+||++|||..+.|++||++|+||++.|.||+++..+|+|++|++.+.+|..+++..+.+....+
T Consensus 572 l~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~~~~i~ 643 (968)
T 3dmq_A 572 FQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIY 643 (968)
T ss_dssp CTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSSHHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf 556767999569998789998701143079985089998057771999999999867876353799789999
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=381.15 Aligned_cols=448 Identities=16% Similarity=0.196 Sum_probs=287.0
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-H
Q ss_conf 434799999999999966436999255379999969999999980311226568777888887787899829999260-1
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
..|+|||.+++.|++.. ++|++++||+|||++++.++...... ..+++|||||. +
T Consensus 8 ~~l~~~Q~~~i~~~~~~------~~ll~~~tG~GKT~~~~~~~~~~~~~------------------~~~~~liv~P~~~ 63 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET------NCLIVLPTGLGKTLIAMMIAEYRLTK------------------YGGKVLMLAPTKP 63 (494)
T ss_dssp HCCCHHHHHHHHHGGGS------CEEEECCTTSCHHHHHHHHHHHHHHH------------------SCSCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHHC------CEEEECCCCCCHHHHHHHHHHHHHHC------------------CCCEEEEEECCHH
T ss_conf 78639999999999619------98999189987899999999999864------------------7985999978889
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCC-HHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 5999999998813999836999959986466-101048779996312358855310499853223367532013466653
Q 002744 269 AVTQWVSEINRFTSVGSTKVLIYHGSNRERS-AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVHL 347 (885)
Q Consensus 269 ll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~~-~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (885)
|+.||.+++.+|+......+..++|...... ...+...+|+|+||+.+...+..
T Consensus 64 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~------------------------- 118 (494)
T 1wp9_A 64 LVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA------------------------- 118 (494)
T ss_dssp HHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHEEEEECCCCHHHHHHHCCCCCEEEECHHHHHHHHHC-------------------------
T ss_conf 9999999999874756111687607753355665335798999639999999860-------------------------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCHHH--
Q ss_conf 101698612444655999862103433688998789877889877889999997442003999814601489884799--
Q 002744 348 KYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA-- 425 (885)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~S~~~-- 425 (885)
..+....|++||+||||++++..+...
T Consensus 119 ---------------------------------------------------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~ 147 (494)
T 1wp9_A 119 ---------------------------------------------------GRISLEDVSLIVFDEAHRAVGNYAYVFIA 147 (494)
T ss_dssp ---------------------------------------------------TSCCTTSCSEEEEETGGGCSTTCHHHHHH
T ss_pred ---------------------------------------------------CCCCHHHCEEEEEECCCCCCCCCCHHHHH
T ss_conf ---------------------------------------------------87156541089997875668888199999
Q ss_pred HHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 9998-421460999847678785334799999724587874223466654456678889999999830134554320352
Q 002744 426 KAVL-ALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATP 504 (885)
Q Consensus 426 ~~l~-~l~~~~RllLTGTPi~N~l~eL~sll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (885)
..+. .....++|+|||||. ++..+++.++.++++.......... .. ...++..
T Consensus 148 ~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~---------------------~~---~~~~~~~- 201 (494)
T 1wp9_A 148 REYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENS---------------------PD---VRPYVKG- 201 (494)
T ss_dssp HHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTS---------------------TT---TGGGCCC-
T ss_pred HHHHHCCCCCEEEEEECCCC-CCCHHHHHHHHHCCHHEEECCCCCC---------------------HH---HHHHCCC-
T ss_conf 99973288776999956998-8857899999850700050267875---------------------87---8875278-
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 10148884146799999999845764333268766556899707888606899899999999999999999999750655
Q 002744 505 IQTHGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTV 584 (885)
Q Consensus 505 i~~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~~~y~~l~~~~~~~~~~~~~~~~~ 584 (885)
......... .......+...+.+.+.++.+.........|.. ...+..+.... . ..+......+..
T Consensus 202 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~----~~~~~~~~~~~~ 267 (494)
T 1wp9_A 202 IRFEWVRVD-LPEIYKEVRKLLREMLRDALKPLAETGLLESSS------PDIPKKEVLRA---G----QIINEEMAKGNH 267 (494)
T ss_dssp CCEEEEEEC-CCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC------TTSCHHHHHHH---H----HHHHHHHTTTCC
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCHHHHHHH---H----HHHHHHHHCCCC
T ss_conf 742689568-858899999989899999999999735565457------77335578999---9----999987533563
Q ss_pred -CC----------------------CHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -66----------------------2457999999999750596530111121235877133334464504355768898
Q 002744 585 -MN----------------------NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDP 641 (885)
Q Consensus 585 -~~----------------------~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 641 (885)
.- +.......+..+...+.++.... ...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------------~~~------------ 318 (494)
T 1wp9_A 268 DLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA-----------------SKE------------ 318 (494)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH-----------------HHH------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHH-----------------HHH------------
T ss_conf 113479999888889999999985257999999999987522321145-----------------566------------
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH--CCCCCCCCHHHHHH
Q ss_conf 4346881110444521013646778999898843345566787888864423677760013210--01236830589999
Q 002744 642 VVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRI--QLDEFQSSTKIEAL 719 (885)
Q Consensus 642 ~~~~c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~Kl~~L 719 (885)
.++..-+ ....... .......++|+..|
T Consensus 319 -------~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~k~~~l 348 (494)
T 1wp9_A 319 -------IFSDKRM-------------------------------------------KKAISLLVQAKEIGLDHPKMDKL 348 (494)
T ss_dssp -------HHTSHHH-------------------------------------------HHHHHHHHHHHHHTCSCHHHHHH
T ss_pred -------HHHHHHH-------------------------------------------HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf -------6650788-------------------------------------------98999999887458998699999
Q ss_pred HHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEC--------CCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 999999883089961999916714899999998838992899833--------889999999998411699935999845
Q 002744 720 REEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVNCVQLVG--------SMSIPARDAAINRFTEDPDCKIFLMSL 791 (885)
Q Consensus 720 ~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~gi~~~~i~G--------~~~~~~R~~~i~~F~~~~~~~VlLlSt 791 (885)
.++|...+...+++|+|||++++.+++.++..|...|+++..++| +++..+|++++++|+++ ...|++ +|
T Consensus 349 ~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~-~~~vLv-~T 426 (494)
T 1wp9_A 349 KEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNVLV-AT 426 (494)
T ss_dssp HHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SCSEEE-EC
T ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEE-EC
T ss_conf 9999998436899759999766899999999999759980799656654444458999999999998669-946999-88
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8874212334559899968999916478995643504996659999998489799999999999999872
Q 002744 792 KAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFE 861 (885)
Q Consensus 792 ~agg~GLNL~~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~ 861 (885)
.++++|+||+.|++||+||++|||..+.|++||++|.|| +.+|+|++.+|+||+++.++..|+.+++
T Consensus 427 ~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 427 SVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 841258871437989992898878999998752257788---4699999569878999998887898730
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=347.41 Aligned_cols=474 Identities=13% Similarity=0.117 Sum_probs=267.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-
Q ss_conf 2434799999999999966436999255379999969999999980311226568777888887787899829999260-
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 267 (885)
Q Consensus 189 ~~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 267 (885)
...|+|||.+++.+++.. +++|++++||+|||++++..+......... ...+++|||||.
T Consensus 246 ~~~~r~~Q~~ai~~il~g-----~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------------~~~~~vLvl~Pt~ 306 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKV 306 (936)
T ss_dssp --CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------------SCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHHHHHHHHHHHHCCC--------------CCCCEEEEEECCH
T ss_conf 898779999999999809-----989999699845999999999999973655--------------6898599996989
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCC--CHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 1599999999881399983699995998646--61010487799963123588553104998532233675320134666
Q 002744 268 AAVTQWVSEINRFTSVGSTKVLIYHGSNRER--SAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 345 (885)
Q Consensus 268 sll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~--~~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (885)
+|+.||.+++.++++...+++..++|..... ........+|+|+|++.+...+....
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~--------------------- 365 (936)
T 4a2w_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--------------------- 365 (936)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS---------------------
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCC---------------------
T ss_conf 99999999999971216955999979963125789741699999944999999987176---------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCHHH
Q ss_conf 53101698612444655999862103433688998789877889877889999997442003999814601489884799
Q 002744 346 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTA 425 (885)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~S~~~ 425 (885)
......|++||+||||++.+..+...
T Consensus 366 ------------------------------------------------------~~~l~~~~liViDEaH~~~~~~~~~~ 391 (936)
T 4a2w_A 366 ------------------------------------------------------LTSLSIFTLMIFDECHNTTGNHPYNV 391 (936)
T ss_dssp ------------------------------------------------------CCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred ------------------------------------------------------CCCCCCCCEEEEECCCCCCCCCCHHH
T ss_conf ------------------------------------------------------45336787999987313599866999
Q ss_pred HHHHHC--------CCCCEEEEECCCCCCCHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999842--------146099984767878533479999972-------45878742234666544566788899999998
Q 002744 426 KAVLAL--------ESSYKWALSGTPLQNRVGELYSLVRFL-------QITPYSYYFCKDCDCKVLDYSSAECPNCPHNS 490 (885)
Q Consensus 426 ~~l~~l--------~~~~RllLTGTPi~N~l~eL~sll~fL-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (885)
.....+ ....+++|||||.+++..++...+..+ +...... .
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~------------------------~ 447 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST------------------------V 447 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC------------------------C
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEC------------------------C
T ss_conf 9999999863137886739986388554540208999999999998549715534------------------------6
Q ss_pred CCHHHHHHHHHCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE----------------
Q ss_conf 30134554320352101488----8414679999999984576433326876655689970788----------------
Q 002744 491 VRHFCWWNRYVATPIQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVS---------------- 550 (885)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~---------------- 550 (885)
..+......++..+...... ...........+...+..++-..... ......+....-
T Consensus 448 ~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~--~~l~~~~~~~~g~~~y~~~l~~l~k~~~ 525 (936)
T 4a2w_A 448 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYV--DTLSQNSKKDFGTQNYEHWIVVTQRKCR 525 (936)
T ss_dssp CSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC--------------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 54489998753677623773365567579999999999999999988766--5553202233225779999999999887
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 86068998999999999999999999997506556624579999999997505965301111212358771333344645
Q 002744 551 LRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQV 630 (885)
Q Consensus 551 ~~~~~ls~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~ 630 (885)
.............+..+... ...+..+...-.. ............+...+..... .+....+..-..
T Consensus 526 ~~~l~~~~~~~~~~~~l~~~-~~~l~~~~~al~i-~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~e~~l~~-- 592 (936)
T 4a2w_A 526 LLQLEDKEEESRICRALFIC-TEHLRKYNDALII-SEDARIIDALSYLTEFFTNVKN---------GPYTELEQHLTA-- 592 (936)
T ss_dssp HCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHH---------TTCCHHHHHHHH--
T ss_pred HHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHH--
T ss_conf 74055321035799999999-9999998888750-0204288899999999998763---------258878999999--
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 04355768898434688111044452101364677899989884334556678788886442367776001321001236
Q 002744 631 CGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEF 710 (885)
Q Consensus 631 c~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (885)
.|.. ....+.....+..
T Consensus 593 ------------------~~~~---------------------------------------------~~~~l~~~~~~~~ 609 (936)
T 4a2w_A 593 ------------------KFQE---------------------------------------------KEPELIALSKDET 609 (936)
T ss_dssp ------------------HHHH---------------------------------------------HHHHHHHHHTSTT
T ss_pred ------------------HHHH---------------------------------------------HHHHHHHHHHCCC
T ss_conf ------------------8999---------------------------------------------9999997640567
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 830589999999999883089961999916714899999998838------------99289983388999999999841
Q 002744 711 QSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINRF 778 (885)
Q Consensus 711 ~~s~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~------------gi~~~~i~G~~~~~~R~~~i~~F 778 (885)
..++|+..|.++|...+...+++|+|||++++.+++.|..+|... |..+..++|+++..+|.+++++|
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 78979999999999985358997499996979999999999863735366661699657876567888999999999986
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 16999359998458874212334559899968999916478995643504996659999998489799999999999999
Q 002744 779 TEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKL 858 (885)
Q Consensus 779 ~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~ 858 (885)
++++..+||+ +|+++++||||+.|++||+||++|||..+.|++|| ||.+++.+|+|++.+|+|++.. .+..|..
T Consensus 690 r~~g~~~VLV-aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~ 763 (936)
T 4a2w_A 690 KTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEE 763 (936)
T ss_dssp ----CCSEEE-EECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHH
T ss_pred HCCCCEEEEE-EECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHHHH-HHHHHHH
T ss_conf 3159815999-80726427760558989993899988999996487----7888877999986988999999-9889999
Q ss_pred HHHHHC
Q ss_conf 872111
Q 002744 859 VFEGTV 864 (885)
Q Consensus 859 ~~~~~l 864 (885)
++...+
T Consensus 764 ~~~~~i 769 (936)
T 4a2w_A 764 MMNKAV 769 (936)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=1.00 E-value=1 Score=340.89 Aligned_cols=255 Identities=29% Similarity=0.432 Sum_probs=224.3
Q ss_pred HHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 57643332687665568997078886068998999999999999999999997506556624579999999997505965
Q 002744 527 RSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPY 606 (885)
Q Consensus 527 ~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~ 606 (885)
.+.-+||+|+++..+ ||++.+.++.++|++.|+++|+.+..+....+. ..........++..+++||++|+||+
T Consensus 10 ~~~~~rr~k~~v~~~--LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~----~~~~~~~~~~~l~~l~~Lrq~~~hP~ 83 (271)
T 1z5z_A 10 HSSGLVPRGSHMASD--LPDKIETNVYCNLTPEQAAMYKAEVENLFNNID----SVTGIKRKGMILSTLLKLKQIVDHPA 83 (271)
T ss_dssp --------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHTTCTH
T ss_pred CCCCCCCCHHHHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 455641648778751--999779999818999999999999999999997----40352128899999999999848998
Q ss_pred CEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30111121235877133334464504355768898434688111044452101364677899989884334556678788
Q 002744 607 LVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGN 686 (885)
Q Consensus 607 l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 686 (885)
++....
T Consensus 84 l~~~~~-------------------------------------------------------------------------- 89 (271)
T 1z5z_A 84 LLKGGE-------------------------------------------------------------------------- 89 (271)
T ss_dssp HHHCSC--------------------------------------------------------------------------
T ss_pred HHCCCC--------------------------------------------------------------------------
T ss_conf 846873--------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHC-CCCEEEEECC
Q ss_conf 886442367776001321001236830589999999999883089961999916714899999998838-9928998338
Q 002744 687 RTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS-GVNCVQLVGS 765 (885)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~-gi~~~~i~G~ 765 (885)
.....|+|+.+|.++|..+.. .++|+||||+++.+++.|+..|... |+++.+++|+
T Consensus 90 ---------------------~~~~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~ 146 (271)
T 1z5z_A 90 ---------------------QSVRRSGKMIRTMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGE 146 (271)
T ss_dssp ---------------------CCSTTCHHHHHHHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTT
T ss_pred ---------------------CCCCCCHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf ---------------------223468999999999999986--799699995519999999999987339847999799
Q ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCH
Q ss_conf 89999999998411699935999845887421233455989996899991647899564350499665999999848979
Q 002744 766 MSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTI 845 (885)
Q Consensus 766 ~~~~~R~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~Ti 845 (885)
++..+|++++++|++++.+.|+|+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+
T Consensus 147 ~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 147 LSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp SCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSH
T ss_pred CCHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCH
T ss_conf 99999999999832899997899722351588676448999997999985189999985232389985699998549889
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 999999999999987211179820015888999985114
Q 002744 846 EERILKLQEKKKLVFEGTVGGSADAFGKLTEADMRFLFV 884 (885)
Q Consensus 846 Ee~i~~~~~~K~~~~~~~l~~~~~~~~~~~~~~~~~lf~ 884 (885)
||+|++++..|..+++.+++++......++.+|++.||.
T Consensus 227 Ee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 265 (271)
T 1z5z_A 227 EEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 265 (271)
T ss_dssp HHHHHHHHHHCHHHHTTGGGGTTHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHC
T ss_conf 999999999999999999716705432389999999965
No 8
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=340.83 Aligned_cols=470 Identities=14% Similarity=0.151 Sum_probs=269.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-
Q ss_conf 2434799999999999966436999255379999969999999980311226568777888887787899829999260-
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 267 (885)
Q Consensus 189 ~~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 267 (885)
...|+|||.+++.+++.. +++|++++||+|||++++..+......... ...+++|||||.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~-----~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------------~~~~~~Lvl~Pt~ 306 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKV 306 (797)
T ss_dssp --CCCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHHC-----CCEEEEECCCCHHHHHHHHHHHHHHHHCCC--------------CCCCEEEEEECCH
T ss_conf 899999999999999809-----998999699972999999999999984665--------------6799699996989
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--HHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 15999999998813999836999959986466--1010487799963123588553104998532233675320134666
Q 002744 268 AAVTQWVSEINRFTSVGSTKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVV 345 (885)
Q Consensus 268 sll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~~--~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (885)
.|+.||.+++.++++...+++..++|...... .......+|+|+|++.+...+...
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~---------------------- 364 (797)
T 4a2q_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG---------------------- 364 (797)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS----------------------
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHC----------------------
T ss_conf 9999999999986143794699996996232469974079999997669999999826----------------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECEEEEECCCCCCCCCCHH
Q ss_conf 53101698612444655999862103433688998789877889877889999997-44200399981460148988479
Q 002744 346 HLKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPL-HSLKWERIILDEAHFIKDRRSNT 424 (885)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~w~~vIiDEaH~ikn~~S~~ 424 (885)
.+ ....|++||+||||++.+..+..
T Consensus 365 ------------------------------------------------------~~~~~~~~~~iViDEaH~~~~~~~~~ 390 (797)
T 4a2q_A 365 ------------------------------------------------------TLTSLSIFTLMIFDECHNTTGNHPYN 390 (797)
T ss_dssp ------------------------------------------------------SCCCGGGCSEEEETTGGGCSTTSHHH
T ss_pred ------------------------------------------------------CCCCCCCCCEEEEECCCCCCCCCCHH
T ss_conf ------------------------------------------------------54651337789998863558876499
Q ss_pred HHHHHHC--------CCCCEEEEECCCCCCCHHHHHHHHHH-------HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999842--------14609998476787853347999997-------24587874223466654456678889999999
Q 002744 425 AKAVLAL--------ESSYKWALSGTPLQNRVGELYSLVRF-------LQITPYSYYFCKDCDCKVLDYSSAECPNCPHN 489 (885)
Q Consensus 425 ~~~l~~l--------~~~~RllLTGTPi~N~l~eL~sll~f-------L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (885)
......+ ....+++|||||.+++..++...+.. |+......
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~------------------------ 446 (797)
T 4a2q_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST------------------------ 446 (797)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEEC------------------------
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC------------------------
T ss_conf 99999999763147887859997277554552248999999999998549848854------------------------
Q ss_pred CCCHHHHHHHHHCCCCCCCCC----CCHHHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE-----------
Q ss_conf 830134554320352101488----8414679----999999984576433326876655689970788-----------
Q 002744 490 SVRHFCWWNRYVATPIQTHGN----SYGGRRA----MILLKHKVLRSVILRRTKKGRAADLALPPRIVS----------- 550 (885)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~----~~~~~~~----~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~----------- 550 (885)
..........++..+...... ....... .....+.++..+.-.... . .++....-
T Consensus 447 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l----~--~~~~~~~g~~~~~~~~~~~ 520 (797)
T 4a2q_A 447 VRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTL----S--QNSKKDFGTQNYEHWIVVT 520 (797)
T ss_dssp CCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------------CCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHCCCCCCCHHHHHHHHHH
T ss_conf 543178899735888548884577778678999999999999999998756776----5--3000011405677899999
Q ss_pred -----EEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHH
Q ss_conf -----860689989999999999999999999975065566245799999999975059653011112123587713333
Q 002744 551 -----LRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAE 625 (885)
Q Consensus 551 -----~~~~~ls~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~ 625 (885)
.........+...+..+.. ....+..+...-. ..........+..++..+...... .....+.
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~- 588 (797)
T 4a2q_A 521 QRKCRLLQLEDKEEESRICRALFI-CTEHLRKYNDALI-ISEDARIIDALSYLTEFFTNVKNG---------PYTELEQ- 588 (797)
T ss_dssp HHHHHHCCCSSHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHT---------TCCHHHH-
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHCC---------CCCHHHH-
T ss_conf 998777403432025679999999-9999999998876-541325888999999999987504---------7668999-
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 44645043557688984346881110444521013646778999898843345566787888864423677760013210
Q 002744 626 HVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRI 705 (885)
Q Consensus 626 ~~~~~c~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (885)
.... .|. .....+...
T Consensus 589 ~l~~-------------------~~~---------------------------------------------~~~~~l~~~ 604 (797)
T 4a2q_A 589 HLTA-------------------KFQ---------------------------------------------EKEPELIAL 604 (797)
T ss_dssp HHHH-------------------HHH---------------------------------------------TTHHHHHHH
T ss_pred HHHH-------------------HHH---------------------------------------------HHHHHHHHH
T ss_conf 9999-------------------999---------------------------------------------999999876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHH
Q ss_conf 01236830589999999999883089961999916714899999998838------------992899833889999999
Q 002744 706 QLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDA 773 (885)
Q Consensus 706 ~~~~~~~s~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~------------gi~~~~i~G~~~~~~R~~ 773 (885)
.......++|+..|.++|...+...++.|+|||++++.+++.|...|... |..+..++|+++..+|..
T Consensus 605 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~ 684 (797)
T 4a2q_A 605 SKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKG 684 (797)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------
T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHH
T ss_conf 30788899599999999999850589970899979589999999999747564665521898447754578989999999
Q ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 99841169993599984588742123345598999689999164789956435049966599999984897999999999
Q 002744 774 AINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQ 853 (885)
Q Consensus 774 ~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~ 853 (885)
++++|++++.++||+ +|+++++|||++.|++||+||++|||..+.|++|| ||.+++.+|+|++.+++|++ +..+
T Consensus 685 ~l~~F~~~g~~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR----GR~~~g~~i~l~~~~~~ee~-~~~~ 758 (797)
T 4a2q_A 685 VLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCN 758 (797)
T ss_dssp ---------CCSEEE-EECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHH
T ss_pred HHHHHHCCCCCEEEE-ECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHH
T ss_conf 999851369704999-74805447975108989994899988999985388----87878659999728768899-9988
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999998721117
Q 002744 854 EKKKLVFEGTVG 865 (885)
Q Consensus 854 ~~K~~~~~~~l~ 865 (885)
..|..+++..+.
T Consensus 759 ~~ke~~~~~~i~ 770 (797)
T 4a2q_A 759 RYKEEMMNKAVE 770 (797)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999999
No 9
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=1.00 E-value=1 Score=338.93 Aligned_cols=377 Identities=17% Similarity=0.153 Sum_probs=260.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-
Q ss_conf 2434799999999999966436999255379999969999999980311226568777888887787899829999260-
Q 002744 189 ITPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV- 267 (885)
Q Consensus 189 ~~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~- 267 (885)
...|+|||.+++.+++.. .++||+++||+|||++++.++.... +++|||||.
T Consensus 91 ~~~l~~~Q~~ai~~i~~~-----~~~ll~~~TGsGKT~~~l~~i~~~~----------------------~~~Lvl~P~~ 143 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINELS----------------------TPTLIVVPTL 143 (472)
T ss_dssp CCCBCHHHHHHHHHHTTT-----TEEEEECCTTSCHHHHHHHHHHHHC----------------------SCEEEEESSH
T ss_pred CCCCCHHHHHHHHHHHHC-----CCEEEEECCCCCHHHHHHHHHHHCC----------------------CCEEEEECCH
T ss_conf 998688999999999965-----9879996999988999999999809----------------------9999998799
Q ss_pred HHHHHHHHHHHHHCCCCCCE-EEEEECCCCCCCHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 15999999998813999836-99995998646610104877999631235885531049985322336753201346665
Q 002744 268 AAVTQWVSEINRFTSVGSTK-VLIYHGSNRERSAKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 346 (885)
Q Consensus 268 sll~qW~~Ei~~~~~~~~~~-v~v~~G~~~~~~~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (885)
+|+.||.+++.+| ... +.+++|.... ..+|+|+||+.+.......
T Consensus 144 ~L~~Q~~~~~~~~----~~~~v~~~~g~~~~-------~~~Ivv~T~~~l~~~~~~~----------------------- 189 (472)
T 2fwr_A 144 ALAEQWKERLGIF----GEEYVGEFSGRIKE-------LKPLTVSTYDSAYVNAEKL----------------------- 189 (472)
T ss_dssp HHHHHHHHHGGGG----CGGGEEEBSSSCBC-------CCSEEEEEHHHHHHTHHHH-----------------------
T ss_pred HHHHHHHHHHHHC----CCCCEEEECCCCCC-------CCCEEEEECHHHHHHHHHH-----------------------
T ss_conf 9999999999967----99636998787677-------6778999768999779973-----------------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEEEECCCCCCCCCCHHHH
Q ss_conf 31016986124446559998621034336889987898778898778899999974420039998146014898847999
Q 002744 347 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPLHSLKWERIILDEAHFIKDRRSNTAK 426 (885)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~w~~vIiDEaH~ikn~~S~~~~ 426 (885)
.-.|++||+||+|++.+.... .
T Consensus 190 --------------------------------------------------------~~~~~liIvDEaH~~~~~~~~--~ 211 (472)
T 2fwr_A 190 --------------------------------------------------------GNRFMLLIFDEVHHLPAESYV--Q 211 (472)
T ss_dssp --------------------------------------------------------TTTCSEEEEETGGGTTSTTTH--H
T ss_pred --------------------------------------------------------CCCCCEEEEECCCCCCCHHHH--H
T ss_conf --------------------------------------------------------687778999897578976899--9
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 99842146099984767878533479999972458787422346665445667888999999983013455432035210
Q 002744 427 AVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNSVRHFCWWNRYVATPIQ 506 (885)
Q Consensus 427 ~l~~l~~~~RllLTGTPi~N~l~eL~sll~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 506 (885)
.+..+.+.++++|||||..+.-.+. .+..+
T Consensus 212 ~~~~~~~~~~l~lSATp~~~~~~~~-~l~~~------------------------------------------------- 241 (472)
T 2fwr_A 212 IAQMSIAPFRLGLTATFEREDGRHE-ILKEV------------------------------------------------- 241 (472)
T ss_dssp HHHTCCCSEEEEEESCCCCTTSGGG-SHHHH-------------------------------------------------
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHH-HHHHH-------------------------------------------------
T ss_conf 9973577818999327668897789-99997-------------------------------------------------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 14888414679999999984576433326876655689970788860689989999999999999999999975065566
Q 002744 507 THGNSYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREADYYESLYSESQAQFNTYVQAGTVMN 586 (885)
Q Consensus 507 ~~~~~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~~~y~~l~~~~~~~~~~~~~~~~~~~ 586 (885)
+.+.+.++...++. ...+++.....+.+.+++.++..|..+....... ...
T Consensus 242 -------------------~~~~~~~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~----- 292 (472)
T 2fwr_A 242 -------------------VGGKVFELFPDSLA-GKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQF----LRA----- 292 (472)
T ss_dssp -------------------TCCEEEECCHHHHT-SCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSC----SSS-----
T ss_pred -------------------HCCEEEECCHHHHH-CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHH----HHH-----
T ss_conf -------------------29857654789870-6767881899998589989999999999999999----986-----
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 24579999999997505965301111212358771333344645043557688984346881110444521013646778
Q 002744 587 NYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTNCGHAFCKACLFDSSASKFVAK 666 (885)
Q Consensus 587 ~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~c~~~~c~~c~~~~~~~~~~~~ 666 (885)
..+.. ... ....... . ....
T Consensus 293 ------------------~~~~~---------~~~---~~~~~~~-------------~-----------------~~~~ 312 (472)
T 2fwr_A 293 ------------------RGITL---------RRA---EDFNKIV-------------M-----------------ASGY 312 (472)
T ss_dssp ------------------CCCTT---------TCC---SSSTTTT-------------T-----------------TTCC
T ss_pred ------------------CCCCC---------CCH---HHHHHHH-------------H-----------------HHCC
T ss_conf ------------------47542---------244---6689999-------------8-----------------7236
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHH
Q ss_conf 99989884334556678788886442367776001321001236830589999999999883089961999916714899
Q 002744 667 CPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLD 746 (885)
Q Consensus 667 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~lL~~~~~~~~~~KvIIFsq~~~~l~ 746 (885)
++.++..+ .............+.|+..|.+++.. ..++|+|||+++..+++
T Consensus 313 ~~~~~~~~-------------------------~~~~~~~~~~~~~~~k~~~l~~~l~~----~~~~k~lvF~~~~~~~~ 363 (472)
T 2fwr_A 313 DERAYEAL-------------------------RAWEEARRIAFNSKNKIRKLREILER----HRKDKIIIFTRHNELVY 363 (472)
T ss_dssp SSSSSTTT-------------------------HHHHHHHHHHHSCSHHHHHHHHHHHH----TSSSCBCCBCSCHHHHH
T ss_pred CHHHHHHH-------------------------HHHHHHHHHHHCCHHHHHHHHHHHHH----CCCCCEEEEECCHHHHH
T ss_conf 98899999-------------------------99999999763373899999999985----78983899979799999
Q ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 99999883899289983388999999999841169993599984588742123345598999689999164789956435
Q 002744 747 LINYSLHKSGVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVEQQAQDRIH 826 (885)
Q Consensus 747 ~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlLlSt~agg~GLNL~~A~~VI~~D~~wnp~~~~QaigRi~ 826 (885)
.+...|. +..++|+++..+|+++++.|+++ ...|++ +|+++++|+|++.+++||+++++|||..+.|++||++
T Consensus 364 ~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 364 RISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRIL 436 (472)
T ss_dssp HHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSB
T ss_pred HHHHHHC-----CCEEECCCCHHHHHHHHHHHHCC-CCCEEE-ECCCHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999748-----65562899999999999998679-988899-8570514846202868999899998889999876315
Q ss_pred HCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 04996-6599999984897999999999999998
Q 002744 827 RIGQY-KPIRIVRFLIENTIEERILKLQEKKKLV 859 (885)
Q Consensus 827 RiGQ~-k~V~VyrLv~~~TiEe~i~~~~~~K~~~ 859 (885)
|.||. +.|.+|+|++++|+||++.+++..|...
T Consensus 437 R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 437 RPSKGKKEAVLYELISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp CCCTTTCCEEEEEEEECSCC--------------
T ss_pred CCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCC
T ss_conf 7779985399999981998537999999876505
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=328.31 Aligned_cols=499 Identities=12% Similarity=0.107 Sum_probs=269.5
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH-H
Q ss_conf 434799999999999966436999255379999969999999980311226568777888887787899829999260-1
Q 002744 190 TPLLRYQKEWLAWALKQEESAIRGGILADEMGMGKTIQAIALVLAKREIRGTIGELDASSSSSTGLLGIKATLVICPV-A 268 (885)
Q Consensus 190 ~~L~pyQ~~gv~wl~~~~~~~~~ggILaDemGLGKTiqaiali~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LIV~P~-s 268 (885)
..|+|||.+++.+++.. +++|++++||+|||++++..+......... ...+++|||||. +
T Consensus 6 ~~~~~~Q~~~i~~~~~~-----~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------~~~~~~lil~P~~~ 66 (556)
T 4a2p_A 6 KKARSYQIELAQPAING-----KNALICAPTGSGKTFVSILICEHHFQNMPA--------------GRKAKVVFLATKVP 66 (556)
T ss_dssp --CCHHHHHHHHHHHTT-----CCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------SCCCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHCC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCCC--------------CCCCEEEEEECCHH
T ss_conf 78779999999999749-----989998199971899999999999983745--------------67986999928899
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--HHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 5999999998813999836999959986466--10104877999631235885531049985322336753201346665
Q 002744 269 AVTQWVSEINRFTSVGSTKVLIYHGSNRERS--AKQFSEFDFVITTYSIIEADYRKHVMPPKQKCQYCGKSFYQKKLVVH 346 (885)
Q Consensus 269 ll~qW~~Ei~~~~~~~~~~v~v~~G~~~~~~--~~~l~~~dvvItTy~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (885)
|+.||.+++.++++...+.+..++|...... .......+|+|+|++.+...+....
T Consensus 67 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---------------------- 124 (556)
T 4a2p_A 67 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT---------------------- 124 (556)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS----------------------
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCEEEECHHHHHHHHHHCC----------------------
T ss_conf 9999999999872406945999828987422289861799999988999999998375----------------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEECEEEEECCCCCCCCCCHHH
Q ss_conf 3101698612444655999862103433688998789877889877889999997-442003999814601489884799
Q 002744 347 LKYFCGPSAVRTEKQSKQEKKKMKSSVYEGYPGKKNGKKSSVGGVQKPSGGKSPL-HSLKWERIILDEAHFIKDRRSNTA 425 (885)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~w~~vIiDEaH~ikn~~S~~~ 425 (885)
+ ....|++||+||||++.+......
T Consensus 125 ------------------------------------------------------~~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 125 ------------------------------------------------------LTSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp ------------------------------------------------------CCCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred ------------------------------------------------------CCCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf ------------------------------------------------------02503077999988753588645999
Q ss_pred HHHHHC--------CCCCEEEEECCCCCCCHHHHHHH-------HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999842--------14609998476787853347999-------997245878742234666544566788899999998
Q 002744 426 KAVLAL--------ESSYKWALSGTPLQNRVGELYSL-------VRFLQITPYSYYFCKDCDCKVLDYSSAECPNCPHNS 490 (885)
Q Consensus 426 ~~l~~l--------~~~~RllLTGTPi~N~l~eL~sl-------l~fL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (885)
.....+ ....+++|||||.+++..++... ...+++..... .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~------------------------~ 206 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIST------------------------V 206 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEC------------------------C
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECC------------------------H
T ss_conf 9999998530136888769999478566751669999999999998539848433------------------------3
Q ss_pred CCHHHHHHHHHCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHH-HHHH
Q ss_conf 30134554320352101488----841467999999998457643332687665568997078886068998999-9999
Q 002744 491 VRHFCWWNRYVATPIQTHGN----SYGGRRAMILLKHKVLRSVILRRTKKGRAADLALPPRIVSLRRDSLDIREA-DYYE 565 (885)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~l~~ll~~~~lRr~k~dv~~~l~lp~~~~~~~~~~ls~~e~-~~y~ 565 (885)
......+..++..+...... ...........+...+..+.-....-. .....+ ...+..... .+..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~g~~~~~~~~~ 277 (556)
T 4a2p_A 207 RENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVD--TLSQNS-------KKDFGTQNYEHWIV 277 (556)
T ss_dssp CTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC------------------CCCSSHHHHHHHH
T ss_pred HCCHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCC-------CCCCCHHHHHHHHH
T ss_conf 202677874279985379982787677599999999999999998886320--121033-------33443356789999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999999997506556624579999999997505965301111212358771333344645043557688984346
Q 002744 566 SLYSESQAQFNTYVQAGTVMNNYAHIFDLLTRLRQAVDHPYLVVYSKTASLRGETEADAEHVQQVCGLCNDLADDPVVTN 645 (885)
Q Consensus 566 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 645 (885)
.+.... ... ...........+..+......++... +..... .. .............|.......-...-..
T Consensus 278 ~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~--~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 348 (556)
T 4a2p_A 278 VTQRKC-RLL-QLEDKEEESRICRALFICTEHLRKYN-DALIIS--ED----ARIIDALSYLTEFFTNVKNGPYTELEQH 348 (556)
T ss_dssp HHHHHH-HHC----CHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HH----SCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHH-HHH-CCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH--HH----HHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 999987-764-05432016789999999999999999-999886--11----2078999999999999873379878999
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 88111044452101364677899989884334556678788886442367776001321001236830589999999999
Q 002744 646 CGHAFCKACLFDSSASKFVAKCPTCSIPLTVDFTANEGAGNRTSKTTIKGFKSSSILNRIQLDEFQSSTKIEALREEIRF 725 (885)
Q Consensus 646 c~~~~c~~c~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~L~~lL~~ 725 (885)
....|+. ....+..........++|+..|.++|..
T Consensus 349 ~~~~~~~---------------------------------------------~~~~l~~~~~~~~~~~~K~~~L~~~l~~ 383 (556)
T 4a2p_A 349 LTAKFQE---------------------------------------------KEPELIALSKDETNENPKLEELVCILDD 383 (556)
T ss_dssp HHHHHHT---------------------------------------------THHHHHHHHHCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHH---------------------------------------------HHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 9998766---------------------------------------------7887642103789999699999999999
Q ss_pred HHHCCCCCCEEEECCCHHHHHHHHHHHHHC------------CCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 883089961999916714899999998838------------99289983388999999999841169993599984588
Q 002744 726 MVERDGSAKGIVFSQFTSFLDLINYSLHKS------------GVNCVQLVGSMSIPARDAAINRFTEDPDCKIFLMSLKA 793 (885)
Q Consensus 726 ~~~~~~~~KvIIFsq~~~~l~~L~~~L~~~------------gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~VlLlSt~a 793 (885)
.+...+++|+|||++++.+++.|...|... |..+..++|+++..+|.+++++|++++..+||+ +|++
T Consensus 384 ~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLv-aT~~ 462 (556)
T 4a2p_A 384 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLI-ATSV 462 (556)
T ss_dssp HHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEE-EEC-
T ss_pred HHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCC
T ss_conf 834799854999976589999999999858775500014787367765565669899999999840469658999-7670
Q ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 74212334559899968999916478995643504996659999998489799999999999999872111798200158
Q 002744 794 GGVALNLTVASHVFLMDPWWNPAVEQQAQDRIHRIGQYKPIRIVRFLIENTIEERILKLQEKKKLVFEGTVGGSADAFGK 873 (885)
Q Consensus 794 gg~GLNL~~A~~VI~~D~~wnp~~~~QaigRi~RiGQ~k~V~VyrLv~~~TiEe~i~~~~~~K~~~~~~~l~~~~~~~~~ 873 (885)
+++|||++.+++||+||++|||..+.|++|| ||.+++.+|.|++.+++|++ +.....|..+++..+. .+..
T Consensus 463 ~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~----~i~~ 533 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE----KIQK 533 (556)
T ss_dssp ----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHH----HHHT
T ss_pred HHCCCCCHHCCEEEEECCCCCHHHHHHHCCC----CCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHHH----HHHC
T ss_conf 4337775217889991899978899886387----87888418999827636777-7755799999999999----7206
Q ss_pred CCHHHHH
Q ss_conf 8899998
Q 002744 874 LTEADMR 880 (885)
Q Consensus 874 ~~~~~~~ 880 (885)
+..+++.
T Consensus 534 ~~~~~~~ 540 (556)
T 4a2p_A 534 WDEETFA 540 (556)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
T ss_conf 8967899
Done!