Query 002745
Match_columns 885
No_of_seqs 408 out of 2392
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 4E-179 9E-184 1550.6 64.8 673 123-869 5-700 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2E-172 3E-177 1517.9 64.5 686 123-869 13-740 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 3E-169 6E-174 1495.4 68.0 660 138-869 12-699 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 2E-159 3E-164 1416.5 66.1 650 152-869 1-683 (683)
5 KOG1157 Predicted guanosine po 100.0 2.8E-79 6.1E-84 657.6 24.3 428 141-624 69-523 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1.3E-38 2.9E-43 315.7 4.6 153 152-310 1-153 (153)
7 cd05399 NT_Rel-Spo_like Nucleo 99.9 6.1E-26 1.3E-30 218.7 12.3 123 351-488 4-129 (129)
8 PF04607 RelA_SpoT: Region fou 99.9 4.2E-26 9E-31 215.2 10.4 110 375-498 1-113 (115)
9 COG2357 PpGpp synthetase catal 99.9 8.3E-24 1.8E-28 218.9 11.5 116 371-498 53-178 (231)
10 PF02824 TGS: TGS domain; Int 99.7 2.6E-17 5.7E-22 138.9 5.3 60 565-624 1-60 (60)
11 PF13291 ACT_4: ACT domain; PD 99.4 5.9E-13 1.3E-17 117.9 10.6 77 793-869 3-80 (80)
12 cd01666 TGS_DRG_C TGS_DRG_C: 99.2 1E-11 2.2E-16 109.5 5.1 60 565-624 2-75 (75)
13 cd01669 TGS_Ygr210_C TGS_Ygr21 99.1 4.5E-11 9.8E-16 105.7 4.6 51 573-624 23-76 (76)
14 cd04877 ACT_TyrR N-terminal AC 99.1 3.7E-10 8.1E-15 98.9 8.9 68 798-870 2-70 (74)
15 cd04887 ACT_MalLac-Enz ACT_Mal 99.0 1.5E-09 3.2E-14 94.3 9.8 69 799-868 2-71 (74)
16 cd04888 ACT_PheB-BS C-terminal 99.0 2.4E-09 5.3E-14 93.1 9.3 71 798-869 2-74 (76)
17 cd01668 TGS_RelA_SpoT TGS_RelA 98.9 5.5E-09 1.2E-13 87.0 7.2 60 565-624 1-60 (60)
18 cd04878 ACT_AHAS N-terminal AC 98.6 2.3E-07 5E-12 78.6 9.7 70 798-868 2-72 (72)
19 PRK04435 hypothetical protein; 98.6 3.8E-07 8.2E-12 90.8 10.7 74 795-869 68-143 (147)
20 cd04881 ACT_HSDH-Hom ACT_HSDH_ 98.5 2.9E-07 6.3E-12 79.4 8.3 69 799-867 3-72 (79)
21 PRK08577 hypothetical protein; 98.5 7.2E-07 1.6E-11 87.4 10.4 73 796-868 56-130 (136)
22 cd04901 ACT_3PGDH C-terminal A 98.5 1.9E-07 4.1E-12 79.7 4.6 65 799-868 2-67 (69)
23 cd01616 TGS The TGS domain, na 98.4 4.7E-07 1E-11 73.7 6.7 59 566-624 2-60 (60)
24 PRK06737 acetolactate synthase 98.4 1.8E-06 4E-11 76.5 9.6 71 798-868 4-74 (76)
25 PRK13562 acetolactate synthase 98.4 1.6E-06 3.5E-11 77.9 9.4 71 798-868 4-75 (84)
26 cd04938 TGS_Obg-like TGS_Obg-l 98.4 4.2E-07 9.1E-12 80.6 5.5 52 573-624 24-76 (76)
27 cd04879 ACT_3PGDH-like ACT_3PG 98.4 1.1E-06 2.4E-11 74.0 7.0 68 799-868 2-69 (71)
28 PRK09602 translation-associate 98.3 4.1E-07 8.9E-12 104.1 4.7 62 563-625 318-395 (396)
29 cd01667 TGS_ThrRS_N TGS _ThrRS 98.3 2.2E-06 4.8E-11 70.2 6.8 59 566-624 2-60 (61)
30 cd04903 ACT_LSD C-terminal ACT 98.2 3.8E-06 8.2E-11 71.0 7.4 68 799-868 2-69 (71)
31 PRK11152 ilvM acetolactate syn 98.2 5.8E-06 1.3E-10 73.4 8.8 71 798-869 5-75 (76)
32 PF01842 ACT: ACT domain; Int 98.2 6.8E-06 1.5E-10 69.0 8.2 65 798-863 2-66 (66)
33 cd04886 ACT_ThrD-II-like C-ter 98.2 7.1E-06 1.5E-10 69.6 8.2 63 799-861 1-67 (73)
34 cd04876 ACT_RelA-SpoT ACT dom 98.1 1.8E-05 3.9E-10 65.0 9.4 70 799-869 1-71 (71)
35 cd04874 ACT_Af1403 N-terminal 98.1 1.5E-05 3.2E-10 67.7 8.9 70 798-869 2-71 (72)
36 PRK07334 threonine dehydratase 98.1 1E-05 2.2E-10 93.0 10.3 72 793-864 323-398 (403)
37 PRK08178 acetolactate synthase 98.1 1.5E-05 3.2E-10 73.6 9.1 72 797-869 9-80 (96)
38 TIGR03276 Phn-HD phosphonate d 98.0 9.7E-06 2.1E-10 82.9 7.5 71 160-230 13-101 (179)
39 PRK11895 ilvH acetolactate syn 98.0 3.1E-05 6.7E-10 78.2 10.0 72 798-869 4-75 (161)
40 PF13710 ACT_5: ACT domain; PD 98.0 3.3E-05 7.2E-10 66.1 8.0 63 805-867 1-63 (63)
41 TIGR00119 acolac_sm acetolacta 97.9 5E-05 1.1E-09 76.5 10.0 72 798-869 3-74 (157)
42 PRK00413 thrS threonyl-tRNA sy 97.9 1.5E-05 3.3E-10 96.6 6.9 64 564-627 1-64 (638)
43 CHL00100 ilvH acetohydroxyacid 97.8 7.8E-05 1.7E-09 76.2 8.2 72 798-869 4-75 (174)
44 cd04875 ACT_F4HF-DF N-terminal 97.7 0.00024 5.2E-09 62.0 8.7 61 799-859 2-67 (74)
45 cd04902 ACT_3PGDH-xct C-termin 97.5 0.00029 6.3E-09 60.5 7.4 68 799-868 2-69 (73)
46 cd04870 ACT_PSP_1 CT domains f 97.5 0.00035 7.5E-09 61.4 7.8 64 799-864 2-69 (75)
47 cd04869 ACT_GcvR_2 ACT domains 97.5 0.00039 8.6E-09 61.3 7.6 61 799-859 2-70 (81)
48 COG1163 DRG Predicted GTPase [ 97.5 9.6E-05 2.1E-09 81.3 4.2 62 563-624 289-364 (365)
49 cd04893 ACT_GcvR_1 ACT domains 97.4 0.00063 1.4E-08 60.3 7.8 62 798-861 3-67 (77)
50 cd04884 ACT_CBS C-terminal ACT 97.3 0.0011 2.4E-08 57.5 8.2 62 799-861 2-66 (72)
51 PF13740 ACT_6: ACT domain; PD 97.3 0.0008 1.7E-08 59.4 7.3 62 798-861 4-65 (76)
52 PTZ00258 GTP-binding protein; 97.3 0.00036 7.8E-09 79.9 5.9 63 563-625 303-387 (390)
53 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.002 4.4E-08 56.2 9.3 63 797-860 2-71 (73)
54 PRK00194 hypothetical protein; 97.2 0.00034 7.3E-09 63.4 4.5 68 798-867 5-74 (90)
55 cd04889 ACT_PDH-BS-like C-term 97.2 0.0014 3E-08 53.9 7.3 53 799-853 1-53 (56)
56 PRK05659 sulfur carrier protei 97.2 0.0012 2.6E-08 56.6 6.8 54 570-625 5-62 (66)
57 cd04925 ACT_ACR_2 ACT domain-c 97.1 0.0025 5.4E-08 56.0 8.8 61 798-860 2-70 (74)
58 cd04899 ACT_ACR-UUR-like_2 C-t 97.1 0.0029 6.4E-08 54.0 8.7 61 798-860 2-68 (70)
59 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0027 5.9E-08 54.2 8.2 56 798-856 3-58 (66)
60 cd04927 ACT_ACR-like_2 Second 97.1 0.0028 6E-08 56.2 8.3 65 798-863 2-72 (76)
61 COG4492 PheB ACT domain-contai 97.0 0.0023 5.1E-08 61.9 8.1 73 796-869 72-146 (150)
62 PRK06437 hypothetical protein; 97.0 0.0022 4.7E-08 55.7 7.2 60 564-625 4-63 (67)
63 cd04872 ACT_1ZPV ACT domain pr 97.0 0.0014 3.1E-08 59.2 6.3 64 798-863 3-71 (88)
64 COG1707 ACT domain-containing 97.0 0.0015 3.3E-08 65.4 6.9 75 798-873 4-78 (218)
65 cd04905 ACT_CM-PDT C-terminal 97.0 0.0042 9E-08 55.1 9.0 64 798-861 3-69 (80)
66 cd04873 ACT_UUR-ACR-like ACT d 97.0 0.0038 8.2E-08 52.9 8.3 61 798-860 2-68 (70)
67 cd04885 ACT_ThrD-I Tandem C-te 97.0 0.0023 4.9E-08 55.2 7.0 60 799-860 1-61 (68)
68 cd04883 ACT_AcuB C-terminal AC 97.0 0.005 1.1E-07 52.9 8.9 60 798-860 3-63 (72)
69 cd00565 ThiS ThiaminS ubiquiti 97.0 0.0019 4.2E-08 55.4 6.2 53 571-625 5-61 (65)
70 cd04882 ACT_Bt0572_2 C-termina 96.9 0.0038 8.3E-08 52.2 7.6 58 799-860 2-59 (65)
71 cd04896 ACT_ACR-like_3 ACT dom 96.9 0.0047 1E-07 54.9 8.2 61 798-860 2-70 (75)
72 cd04909 ACT_PDH-BS C-terminal 96.9 0.0054 1.2E-07 52.4 8.3 62 798-860 3-64 (69)
73 PRK12444 threonyl-tRNA synthet 96.8 0.002 4.4E-08 78.4 7.2 66 562-627 3-68 (639)
74 cd04895 ACT_ACR_1 ACT domain-c 96.8 0.0093 2E-07 52.6 9.1 61 797-859 2-69 (72)
75 cd02116 ACT ACT domains are co 96.8 0.0072 1.6E-07 46.7 7.7 60 799-859 1-60 (60)
76 cd04897 ACT_ACR_3 ACT domain-c 96.8 0.0084 1.8E-07 53.3 8.7 62 797-860 2-70 (75)
77 cd04880 ACT_AAAH-PDT-like ACT 96.7 0.0076 1.6E-07 52.7 8.4 63 799-861 2-67 (75)
78 PRK13011 formyltetrahydrofolat 96.7 0.0058 1.3E-07 67.5 9.3 68 796-863 7-78 (286)
79 PRK07440 hypothetical protein; 96.7 0.0043 9.3E-08 54.3 6.6 54 570-625 9-66 (70)
80 cd04926 ACT_ACR_4 C-terminal 96.7 0.0083 1.8E-07 52.4 8.5 47 797-845 2-48 (72)
81 PRK06944 sulfur carrier protei 96.7 0.0045 9.9E-08 52.8 6.4 52 571-625 6-61 (65)
82 PRK11589 gcvR glycine cleavage 96.7 0.006 1.3E-07 63.5 8.4 64 796-859 95-166 (190)
83 PRK01777 hypothetical protein; 96.6 0.0035 7.7E-08 58.2 5.6 54 573-626 19-77 (95)
84 PLN02908 threonyl-tRNA synthet 96.5 0.0039 8.4E-08 76.6 7.0 65 563-627 50-115 (686)
85 TIGR01683 thiS thiamine biosyn 96.5 0.0074 1.6E-07 51.6 6.7 53 571-625 4-60 (64)
86 PRK07696 sulfur carrier protei 96.5 0.0066 1.4E-07 52.7 6.1 53 571-625 6-63 (67)
87 PRK08364 sulfur carrier protei 96.4 0.0081 1.8E-07 52.5 6.4 50 574-625 17-66 (70)
88 cd04928 ACT_TyrKc Uncharacteri 96.4 0.019 4.2E-07 50.1 8.4 52 798-850 3-55 (68)
89 PRK08053 sulfur carrier protei 96.3 0.012 2.6E-07 50.8 6.7 54 570-625 5-62 (66)
90 TIGR00655 PurU formyltetrahydr 96.2 0.015 3.1E-07 64.2 8.4 65 799-863 3-73 (280)
91 COG2104 ThiS Sulfur transfer p 96.2 0.013 2.8E-07 51.2 6.3 52 572-625 9-64 (68)
92 COG0440 IlvH Acetolactate synt 96.1 0.014 3E-07 59.0 6.7 72 798-869 6-80 (163)
93 COG3830 ACT domain-containing 96.0 0.0047 1E-07 56.4 2.9 48 796-845 3-50 (90)
94 PRK06027 purU formyltetrahydro 96.0 0.015 3.3E-07 64.2 7.0 67 797-863 7-78 (286)
95 TIGR01127 ilvA_1Cterm threonin 95.9 0.029 6.2E-07 64.2 9.4 68 795-862 304-375 (380)
96 PRK06488 sulfur carrier protei 95.8 0.024 5.3E-07 48.6 6.2 52 571-625 6-61 (65)
97 PRK09601 GTP-binding protein Y 95.8 0.013 2.9E-07 66.6 5.8 61 564-624 280-362 (364)
98 cd04906 ACT_ThrD-I_1 First of 95.7 0.044 9.5E-07 49.5 7.6 61 798-861 3-65 (85)
99 PRK08198 threonine dehydratase 95.6 0.044 9.6E-07 63.2 9.5 67 796-862 327-397 (404)
100 cd04931 ACT_PAH ACT domain of 95.6 0.058 1.3E-06 49.6 8.3 69 796-864 14-84 (90)
101 PRK11790 D-3-phosphoglycerate 95.6 0.024 5.2E-07 65.6 7.0 68 798-869 340-407 (409)
102 cd04904 ACT_AAAH ACT domain of 95.5 0.062 1.3E-06 47.3 7.9 64 798-861 2-66 (74)
103 PRK13010 purU formyltetrahydro 95.5 0.038 8.2E-07 61.2 7.9 68 797-864 10-83 (289)
104 PRK11589 gcvR glycine cleavage 95.4 0.023 5.1E-07 59.2 5.6 68 796-865 8-78 (190)
105 PRK06382 threonine dehydratase 95.4 0.055 1.2E-06 62.6 9.2 67 796-862 330-400 (406)
106 PRK10820 DNA-binding transcrip 95.3 0.032 6.9E-07 66.6 7.2 72 798-874 2-74 (520)
107 PLN02799 Molybdopterin synthas 95.3 0.029 6.2E-07 50.2 5.2 54 571-624 19-77 (82)
108 COG3283 TyrR Transcriptional r 95.3 0.028 6.1E-07 63.1 6.1 73 798-875 2-75 (511)
109 cd04929 ACT_TPH ACT domain of 95.3 0.089 1.9E-06 46.6 8.1 63 799-861 3-66 (74)
110 PRK06083 sulfur carrier protei 94.7 0.067 1.5E-06 48.6 5.8 54 570-625 23-80 (84)
111 PRK08526 threonine dehydratase 94.7 0.11 2.3E-06 60.2 8.8 66 796-861 326-395 (403)
112 PF03658 Ub-RnfH: RnfH family 94.6 0.025 5.3E-07 51.4 2.6 56 569-626 9-74 (84)
113 cd04930 ACT_TH ACT domain of t 94.6 0.2 4.4E-06 48.1 9.0 77 786-862 29-108 (115)
114 PF14451 Ub-Mut7C: Mut7-C ubiq 94.5 0.081 1.8E-06 47.8 5.6 48 574-625 26-76 (81)
115 PRK05863 sulfur carrier protei 94.4 0.082 1.8E-06 45.5 5.4 54 570-625 5-61 (65)
116 TIGR01327 PGDH D-3-phosphoglyc 94.4 0.056 1.2E-06 64.7 5.7 68 799-868 454-521 (525)
117 PRK03059 PII uridylyl-transfer 94.3 0.12 2.6E-06 65.3 8.8 75 786-862 776-854 (856)
118 PRK13581 D-3-phosphoglycerate 94.2 0.069 1.5E-06 63.9 6.2 68 799-868 455-522 (526)
119 COG2716 GcvR Glycine cleavage 94.2 0.054 1.2E-06 55.1 4.5 37 796-832 92-128 (176)
120 PRK05092 PII uridylyl-transfer 94.2 0.12 2.6E-06 65.9 8.5 74 786-861 833-913 (931)
121 PRK05007 PII uridylyl-transfer 94.2 0.15 3.3E-06 64.6 9.4 59 785-845 797-855 (884)
122 cd00754 MoaD Ubiquitin domain 94.2 0.087 1.9E-06 46.4 5.2 53 573-625 18-76 (80)
123 PRK06349 homoserine dehydrogen 94.1 0.15 3.3E-06 59.4 8.5 69 798-867 350-419 (426)
124 PRK03381 PII uridylyl-transfer 94.0 0.1 2.2E-06 65.3 7.2 58 786-845 697-754 (774)
125 KOG2663 Acetolactate synthase, 93.9 0.081 1.8E-06 56.6 5.1 71 798-868 79-149 (309)
126 cd04871 ACT_PSP_2 ACT domains 93.8 0.092 2E-06 47.5 4.7 66 799-864 2-78 (84)
127 TIGR01693 UTase_glnD [Protein- 93.8 0.17 3.7E-06 64.0 8.7 72 786-859 769-846 (850)
128 TIGR00719 sda_beta L-serine de 93.7 0.16 3.6E-06 53.5 7.2 48 798-845 150-197 (208)
129 PRK00275 glnD PII uridylyl-tra 93.6 0.22 4.9E-06 63.2 9.2 64 795-860 813-883 (895)
130 PF06071 YchF-GTPase_C: Protei 93.1 0.092 2E-06 47.7 3.5 52 573-624 13-83 (84)
131 PRK11840 bifunctional sulfur c 93.1 0.19 4.1E-06 56.3 6.7 55 571-627 6-64 (326)
132 PRK03381 PII uridylyl-transfer 93.1 0.27 5.9E-06 61.5 8.7 72 786-860 590-664 (774)
133 PF02597 ThiS: ThiS family; I 93.0 0.13 2.8E-06 44.9 4.2 53 573-625 14-73 (77)
134 PRK01759 glnD PII uridylyl-tra 92.9 0.21 4.6E-06 63.1 7.6 59 785-845 772-830 (854)
135 COG4747 ACT domain-containing 92.8 0.24 5.3E-06 47.5 5.9 68 798-868 5-75 (142)
136 PRK04374 PII uridylyl-transfer 92.5 0.31 6.6E-06 61.8 8.1 58 786-845 786-843 (869)
137 COG2150 Predicted regulator of 92.3 0.41 9E-06 48.3 7.1 72 796-869 95-166 (167)
138 PRK08818 prephenate dehydrogen 92.2 0.43 9.4E-06 54.7 8.2 63 797-860 296-361 (370)
139 TIGR02079 THD1 threonine dehyd 91.8 0.86 1.9E-05 53.0 10.1 67 796-862 325-392 (409)
140 PRK06545 prephenate dehydrogen 91.7 0.36 7.8E-06 55.0 6.8 60 796-856 290-349 (359)
141 COG0788 PurU Formyltetrahydrof 91.3 0.46 9.9E-06 51.7 6.6 65 797-861 8-74 (287)
142 PRK14707 hypothetical protein; 91.3 0.86 1.9E-05 60.7 10.0 153 321-499 2263-2424(2710)
143 PRK08639 threonine dehydratase 91.2 0.8 1.7E-05 53.3 9.2 68 796-863 336-404 (420)
144 PRK11899 prephenate dehydratas 90.8 1.2 2.5E-05 49.4 9.4 68 796-863 194-264 (279)
145 PRK05007 PII uridylyl-transfer 90.0 1.1 2.3E-05 57.2 9.4 73 787-860 692-770 (884)
146 cd04867 TGS_YchF_C TGS_YchF_C: 90.0 0.34 7.5E-06 43.9 3.6 51 573-623 13-82 (83)
147 PRK05092 PII uridylyl-transfer 89.8 1.1 2.4E-05 57.3 9.5 65 796-861 732-803 (931)
148 PRK01759 glnD PII uridylyl-tra 89.8 1.1 2.3E-05 57.0 9.1 73 787-860 668-746 (854)
149 TIGR01682 moaD molybdopterin c 89.7 0.85 1.8E-05 40.6 6.0 52 573-624 18-75 (80)
150 PRK15385 magnesium transport p 89.5 2 4.3E-05 46.1 9.5 71 798-868 144-219 (225)
151 cd04913 ACT_AKii-LysC-BS-like_ 89.5 1 2.2E-05 38.1 6.1 56 803-859 9-65 (75)
152 COG4747 ACT domain-containing 89.2 1.3 2.7E-05 42.8 6.9 58 798-857 71-128 (142)
153 PRK04374 PII uridylyl-transfer 89.1 1.4 3.1E-05 55.9 9.5 74 786-860 680-757 (869)
154 PF13840 ACT_7: ACT domain ; P 89.0 2.2 4.7E-05 36.6 7.8 51 797-854 7-62 (65)
155 TIGR01693 UTase_glnD [Protein- 88.7 1.7 3.6E-05 55.2 9.8 64 795-859 667-737 (850)
156 PRK00907 hypothetical protein; 88.6 2.4 5.2E-05 39.4 8.2 68 798-865 19-89 (92)
157 COG3978 Acetolactate synthase 88.5 1.2 2.5E-05 40.1 5.7 69 798-869 5-75 (86)
158 PRK12483 threonine dehydratase 88.5 1.5 3.2E-05 52.7 8.6 62 796-860 345-408 (521)
159 PLN02550 threonine dehydratase 88.3 1.4 3E-05 53.6 8.2 63 796-861 417-480 (591)
160 PRK04998 hypothetical protein; 88.1 2.8 6.2E-05 38.4 8.3 68 798-865 17-85 (88)
161 COG2844 GlnD UTP:GlnB (protein 88.0 0.93 2E-05 56.0 6.5 58 786-845 781-838 (867)
162 PF03927 NapD: NapD protein; 87.5 1.7 3.8E-05 39.0 6.4 63 797-868 6-70 (79)
163 TIGR01270 Trp_5_monoox tryptop 87.4 2.3 4.9E-05 50.0 8.9 73 796-868 31-105 (464)
164 cd04891 ACT_AK-LysC-DapG-like_ 87.0 1.8 3.9E-05 34.9 5.8 50 803-853 8-58 (61)
165 COG2914 Uncharacterized protei 86.9 0.91 2E-05 42.1 4.3 53 573-625 19-76 (99)
166 PRK00341 hypothetical protein; 86.7 3.6 7.9E-05 38.0 8.2 68 798-865 19-88 (91)
167 COG0077 PheA Prephenate dehydr 85.9 3.8 8.2E-05 45.3 9.2 70 796-865 194-266 (279)
168 PRK00275 glnD PII uridylyl-tra 85.8 2.3 4.9E-05 54.4 8.6 65 796-861 704-776 (895)
169 TIGR01124 ilvA_2Cterm threonin 85.5 2.8 6.2E-05 50.0 8.8 64 796-862 325-389 (499)
170 PRK10622 pheA bifunctional cho 85.1 3.6 7.7E-05 47.7 9.1 67 797-863 298-367 (386)
171 PRK03059 PII uridylyl-transfer 85.0 2.9 6.2E-05 53.2 8.9 64 796-860 678-747 (856)
172 cd04932 ACT_AKiii-LysC-EC_1 AC 84.0 4 8.7E-05 36.2 6.9 56 803-864 11-71 (75)
173 PRK10553 assembly protein for 83.8 3.7 8.1E-05 37.7 6.8 62 802-869 11-74 (87)
174 PRK02047 hypothetical protein; 82.9 7.1 0.00015 36.1 8.3 68 798-865 18-88 (91)
175 PRK09224 threonine dehydratase 82.5 4.2 9.1E-05 48.7 8.5 64 796-862 328-393 (504)
176 TIGR03401 cyanamide_fam HD dom 82.4 2.1 4.6E-05 46.0 5.4 50 145-201 37-95 (228)
177 TIGR01268 Phe4hydrox_tetr phen 82.1 6.6 0.00014 46.0 9.5 67 796-862 16-84 (436)
178 PRK12703 tRNA 2'-O-methylase; 81.8 5 0.00011 45.6 8.3 58 171-228 188-257 (339)
179 TIGR01687 moaD_arch MoaD famil 80.8 3.1 6.7E-05 37.5 5.1 50 574-624 19-83 (88)
180 PF04359 DUF493: Protein of un 80.6 4.1 9E-05 36.8 5.9 68 798-865 12-82 (85)
181 cd04934 ACT_AK-Hom3_1 CT domai 80.3 3.8 8.2E-05 36.2 5.4 56 803-864 11-69 (73)
182 cd04935 ACT_AKiii-DAPDC_1 ACT 80.0 4.9 0.00011 35.6 6.0 56 803-864 11-71 (75)
183 COG2061 ACT-domain-containing 79.9 6.8 0.00015 39.5 7.4 72 797-869 6-79 (170)
184 KOG1637 Threonyl-tRNA syntheta 79.4 0.65 1.4E-05 53.8 0.3 60 569-630 5-65 (560)
185 smart00471 HDc Metal dependent 78.8 1.1 2.4E-05 40.6 1.5 36 168-203 2-43 (124)
186 cd04890 ACT_AK-like_1 ACT doma 78.7 5.3 0.00012 33.2 5.6 51 803-859 10-62 (62)
187 PRK11898 prephenate dehydratas 78.1 9.1 0.0002 42.5 8.7 68 796-863 196-267 (283)
188 cd04937 ACT_AKi-DapG-BS_2 ACT 77.8 8.3 0.00018 32.6 6.6 51 799-855 4-58 (64)
189 PLN02317 arogenate dehydratase 77.3 9.9 0.00021 44.0 8.9 68 796-863 283-367 (382)
190 COG0012 Predicted GTPase, prob 76.9 0.68 1.5E-05 52.8 -0.5 59 563-622 297-368 (372)
191 cd04936 ACT_AKii-LysC-BS-like_ 76.8 8.5 0.00018 31.4 6.3 48 804-857 11-59 (63)
192 cd04914 ACT_AKi-DapG-BS_1 ACT 76.1 11 0.00024 32.5 6.9 57 798-860 3-61 (67)
193 cd04892 ACT_AK-like_2 ACT doma 75.6 11 0.00024 30.4 6.6 47 805-855 12-59 (65)
194 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.7 14 0.0003 30.7 7.1 52 799-854 4-59 (66)
195 PRK09977 putative Mg(2+) trans 74.2 13 0.00029 39.7 8.3 68 798-869 146-214 (215)
196 cd04923 ACT_AK-LysC-DapG-like_ 73.8 11 0.00024 30.7 6.2 48 804-857 11-59 (63)
197 cd04868 ACT_AK-like ACT domain 73.7 12 0.00026 29.5 6.2 43 805-851 12-55 (60)
198 cd04912 ACT_AKiii-LysC-EC-like 73.0 9.7 0.00021 33.3 5.9 53 803-861 11-68 (75)
199 cd04924 ACT_AK-Arch_2 ACT doma 72.9 17 0.00036 30.1 7.1 48 805-856 13-61 (66)
200 PF01966 HD: HD domain; Inter 72.3 1.6 3.4E-05 40.2 0.7 31 172-202 2-39 (122)
201 PRK11130 moaD molybdopterin sy 72.2 9.5 0.00021 34.1 5.7 46 579-624 24-76 (81)
202 TIGR00092 GTP-binding protein 71.0 3.6 7.7E-05 47.3 3.4 61 564-624 284-366 (368)
203 cd04916 ACT_AKiii-YclM-BS_2 AC 70.3 18 0.00038 30.0 6.7 49 804-856 12-61 (66)
204 PRK09169 hypothetical protein; 69.9 29 0.00062 47.9 11.5 109 373-499 1916-2034(2316)
205 cd04919 ACT_AK-Hom3_2 ACT doma 69.7 14 0.0003 30.8 6.0 49 804-856 12-61 (66)
206 COG2716 GcvR Glycine cleavage 67.7 5.6 0.00012 40.9 3.6 67 798-864 7-74 (176)
207 cd04933 ACT_AK1-AT_1 ACT domai 67.7 14 0.00031 33.1 5.8 52 803-860 11-70 (78)
208 COG1418 Predicted HD superfami 67.5 5.1 0.00011 42.9 3.5 36 167-202 33-73 (222)
209 PRK14707 hypothetical protein; 67.0 38 0.00082 46.5 11.4 103 378-498 2544-2654(2710)
210 PF01037 AsnC_trans_reg: AsnC 66.9 26 0.00057 29.7 7.3 57 808-869 10-68 (74)
211 COG4341 Predicted HD phosphohy 64.5 6.2 0.00013 40.2 3.2 46 152-200 13-60 (186)
212 cd04915 ACT_AK-Ectoine_2 ACT d 63.1 22 0.00047 30.5 5.9 48 805-856 13-61 (66)
213 cd04907 ACT_ThrD-I_2 Second of 62.3 34 0.00073 30.8 7.2 61 798-861 3-64 (81)
214 COG2921 Uncharacterized conser 62.3 41 0.00089 31.1 7.6 68 798-865 17-87 (90)
215 cd00077 HDc Metal dependent ph 62.1 4.4 9.5E-05 37.3 1.6 35 170-204 2-44 (145)
216 PRK06635 aspartate kinase; Rev 60.2 19 0.00041 41.6 6.7 55 803-858 270-325 (404)
217 KOG1487 GTP-binding protein DR 59.2 4.2 9E-05 44.5 1.0 61 564-624 282-357 (358)
218 TIGR01269 Tyr_3_monoox tyrosin 59.0 36 0.00078 40.1 8.4 67 798-864 39-110 (457)
219 TIGR02988 YaaA_near_RecF S4 do 58.6 11 0.00025 31.5 3.4 23 600-622 35-58 (59)
220 KOG1486 GTP-binding protein DR 56.9 11 0.00024 41.2 3.7 52 573-624 305-363 (364)
221 cd04918 ACT_AK1-AT_2 ACT domai 54.5 36 0.00079 28.8 5.8 47 805-855 12-59 (65)
222 PF00585 Thr_dehydrat_C: C-ter 54.3 21 0.00046 32.9 4.6 65 796-862 10-75 (91)
223 cd01764 Urm1 Urm1-like ubuitin 53.3 25 0.00054 32.6 5.0 46 579-624 27-89 (94)
224 cd04921 ACT_AKi-HSDH-ThrA-like 53.1 47 0.001 28.8 6.5 48 803-854 11-59 (80)
225 smart00363 S4 S4 RNA-binding d 52.9 13 0.00028 29.5 2.7 25 600-624 27-52 (60)
226 PRK01002 nickel responsive reg 52.6 1.2E+02 0.0027 30.3 10.0 83 787-872 47-133 (141)
227 cd04920 ACT_AKiii-DAPDC_2 ACT 52.6 40 0.00087 28.5 5.8 46 805-856 12-58 (63)
228 COG3062 NapD Uncharacterized p 52.1 57 0.0012 30.5 6.9 62 802-869 12-74 (94)
229 PF04350 PilO: Pilus assembly 52.0 50 0.0011 32.0 7.2 65 804-868 50-117 (144)
230 PF13510 Fer2_4: 2Fe-2S iron-s 51.5 11 0.00025 33.8 2.4 55 567-622 5-79 (82)
231 PF14453 ThiS-like: ThiS-like 49.6 31 0.00068 29.4 4.5 50 571-624 6-55 (57)
232 TIGR00277 HDIG uncharacterized 49.6 17 0.00037 30.9 3.1 33 169-201 3-40 (80)
233 COG1977 MoaD Molybdopterin con 48.7 20 0.00043 32.5 3.5 29 596-624 51-79 (84)
234 TIGR00656 asp_kin_monofn aspar 48.7 50 0.0011 38.2 7.6 73 796-872 260-338 (401)
235 PF01479 S4: S4 domain; Inter 48.2 14 0.0003 29.4 2.1 21 600-620 27-48 (48)
236 COG2316 Predicted hydrolase (H 47.3 22 0.00049 36.4 3.8 58 170-227 47-118 (212)
237 PRK00106 hypothetical protein; 45.9 18 0.00038 43.8 3.4 35 167-201 347-386 (535)
238 TIGR00488 putative HD superfam 45.8 17 0.00036 36.5 2.8 32 171-202 9-45 (158)
239 PF04455 Saccharop_dh_N: LOR/S 45.2 85 0.0018 29.9 7.1 67 806-873 14-83 (103)
240 PRK07569 bidirectional hydroge 45.1 31 0.00068 37.0 4.9 55 568-622 6-76 (234)
241 TIGR00656 asp_kin_monofn aspar 43.7 50 0.0011 38.1 6.7 55 797-857 338-396 (401)
242 PRK13480 3'-5' exoribonuclease 43.7 61 0.0013 36.7 7.1 74 123-200 105-195 (314)
243 TIGR00295 conserved hypothetic 43.6 23 0.00049 36.1 3.4 57 169-226 12-86 (164)
244 COG1713 Predicted HD superfami 42.2 22 0.00048 37.2 3.1 35 171-205 18-57 (187)
245 COG1078 HD superfamily phospho 40.5 14 0.0003 43.3 1.5 51 144-200 27-95 (421)
246 PRK08210 aspartate kinase I; R 40.4 73 0.0016 36.9 7.3 55 798-858 273-329 (403)
247 PF10741 T2SM_b: Type II secre 40.0 97 0.0021 29.2 6.8 56 807-862 16-74 (110)
248 PF00498 FHA: FHA domain; Int 39.6 19 0.00041 30.4 1.8 23 600-622 43-67 (68)
249 cd04917 ACT_AKiii-LysC-EC_2 AC 39.2 1.1E+02 0.0024 25.6 6.4 46 805-856 13-59 (64)
250 PRK06635 aspartate kinase; Rev 38.8 66 0.0014 37.2 6.6 53 797-855 341-397 (404)
251 cd01809 Scythe_N Ubiquitin-lik 38.6 95 0.0021 26.3 6.0 61 564-624 2-71 (72)
252 cd01806 Nedd8 Nebb8-like ubiq 38.2 79 0.0017 27.1 5.5 62 564-625 2-72 (76)
253 COG1188 Ribosome-associated he 38.1 33 0.00071 32.5 3.2 27 600-626 35-61 (100)
254 cd00165 S4 S4/Hsp/ tRNA synthe 37.8 34 0.00074 27.8 3.1 24 600-623 27-51 (70)
255 PRK11198 LysM domain/BON super 37.4 1E+02 0.0023 30.8 6.9 67 806-875 24-90 (147)
256 cd04910 ACT_AK-Ectoine_1 ACT d 36.7 86 0.0019 27.8 5.4 51 804-860 12-62 (71)
257 PRK10119 putative hydrolase; P 36.4 64 0.0014 34.9 5.6 52 148-202 6-62 (231)
258 PRK07431 aspartate kinase; Pro 36.2 63 0.0014 39.5 6.2 56 803-859 278-334 (587)
259 TIGR00657 asp_kinases aspartat 35.4 1.1E+02 0.0023 36.1 7.7 64 797-864 303-369 (441)
260 PF08753 NikR_C: NikR C termin 33.6 3.1E+02 0.0068 24.4 8.6 62 806-869 12-74 (78)
261 PRK12704 phosphodiesterase; Pr 33.2 40 0.00087 40.7 3.8 34 168-201 333-371 (520)
262 PF11976 Rad60-SLD: Ubiquitin- 32.7 78 0.0017 27.1 4.6 60 564-623 2-71 (72)
263 PTZ00305 NADH:ubiquinone oxido 32.7 66 0.0014 36.1 5.0 51 571-621 74-141 (297)
264 KOG3820 Aromatic amino acid hy 32.5 1.4E+02 0.003 34.9 7.5 65 797-861 37-102 (461)
265 KOG1491 Predicted GTP-binding 31.9 40 0.00088 38.5 3.2 59 564-622 307-387 (391)
266 PRK08841 aspartate kinase; Val 31.7 88 0.0019 36.4 6.1 56 796-857 318-374 (392)
267 PF01709 Transcrip_reg: Transc 31.7 83 0.0018 34.1 5.5 62 803-869 169-231 (234)
268 PRK12705 hypothetical protein; 31.4 39 0.00085 40.7 3.2 36 167-202 320-360 (508)
269 PRK11169 leucine-responsive tr 31.2 1.6E+02 0.0034 29.8 7.2 70 799-873 78-150 (164)
270 PF12917 HD_2: HD containing h 30.7 27 0.00059 37.2 1.6 100 171-279 30-143 (215)
271 TIGR03319 YmdA_YtgF conserved 30.6 41 0.0009 40.5 3.3 32 170-201 329-365 (514)
272 COG1578 Uncharacterized conser 30.0 1.7E+02 0.0037 32.5 7.4 116 271-395 11-140 (285)
273 PRK07152 nadD putative nicotin 29.9 36 0.00077 38.7 2.5 34 169-202 195-233 (342)
274 TIGR00384 dhsB succinate dehyd 29.7 50 0.0011 35.1 3.4 45 575-619 19-78 (220)
275 PRK07431 aspartate kinase; Pro 29.2 1.1E+02 0.0024 37.4 6.6 57 803-859 447-505 (587)
276 TIGR00657 asp_kinases aspartat 28.7 1.3E+02 0.0029 35.2 7.1 54 797-856 379-436 (441)
277 PF05153 DUF706: Family of unk 28.5 67 0.0014 35.1 4.0 52 149-200 41-93 (253)
278 PRK09084 aspartate kinase III; 28.2 1.7E+02 0.0038 34.6 7.9 62 804-872 317-385 (448)
279 PRK03007 deoxyguanosinetriphos 27.7 80 0.0017 37.3 4.9 57 145-201 40-106 (428)
280 PRK10885 cca multifunctional t 27.5 2.1E+02 0.0046 33.5 8.3 99 102-201 150-258 (409)
281 PRK04460 nickel responsive reg 27.4 5.3E+02 0.011 25.8 9.9 83 787-872 45-130 (137)
282 cd04911 ACT_AKiii-YclM-BS_1 AC 27.0 1.5E+02 0.0032 26.8 5.3 56 803-864 11-69 (76)
283 COG0527 LysC Aspartokinases [A 26.8 1.3E+02 0.0028 35.8 6.4 65 805-873 319-385 (447)
284 PRK08210 aspartate kinase I; R 26.6 1.3E+02 0.0028 34.9 6.4 54 797-856 340-397 (403)
285 PLN02551 aspartokinase 26.2 1.9E+02 0.0041 35.1 7.7 68 798-872 368-446 (521)
286 PRK01286 deoxyguanosinetriphos 26.1 83 0.0018 36.0 4.5 56 145-200 32-97 (336)
287 cd01803 Ubiquitin Ubiquitin. U 25.7 2.2E+02 0.0047 24.3 6.2 62 564-625 2-72 (76)
288 PRK11179 DNA-binding transcrip 25.3 2.7E+02 0.0059 27.7 7.6 66 798-869 72-139 (153)
289 PF09383 NIL: NIL domain; Int 24.9 2.5E+02 0.0055 24.4 6.5 52 809-861 18-69 (76)
290 PRK09181 aspartate kinase; Val 24.2 1.8E+02 0.0039 34.9 7.0 57 796-856 402-461 (475)
291 PF10369 ALS_ss_C: Small subun 24.2 2.4E+02 0.0053 25.0 6.2 61 799-870 7-67 (75)
292 PRK11507 ribosome-associated p 24.1 84 0.0018 28.0 3.2 23 600-622 38-61 (70)
293 PRK02967 nickel responsive reg 23.8 7E+02 0.015 25.0 10.0 84 786-872 43-130 (139)
294 PLN02551 aspartokinase 23.8 2E+02 0.0044 34.8 7.4 57 796-856 445-504 (521)
295 PRK00630 nickel responsive reg 22.8 7.4E+02 0.016 25.1 10.0 85 786-873 52-142 (148)
296 PF10584 Proteasome_A_N: Prote 22.5 21 0.00045 25.0 -0.7 15 563-577 3-17 (23)
297 cd01805 RAD23_N Ubiquitin-like 22.4 1.8E+02 0.004 25.0 5.1 62 564-625 2-74 (77)
298 COG1034 NuoG NADH dehydrogenas 21.8 1.2E+02 0.0026 38.0 5.0 52 571-622 7-74 (693)
299 PRK00110 hypothetical protein; 21.7 1.2E+02 0.0025 33.3 4.4 65 801-870 169-234 (245)
300 COG3603 Uncharacterized conser 21.4 1.8E+02 0.0038 28.6 4.9 28 803-830 73-100 (128)
301 PRK09466 metL bifunctional asp 21.1 2.5E+02 0.0055 36.0 7.8 70 798-872 319-392 (810)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=4e-179 Score=1550.59 Aligned_cols=673 Identities=36% Similarity=0.553 Sum_probs=605.3
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002745 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (885)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvE 202 (885)
.+++.+++.+.+. .|.++.+.+ +.+|+.||.++|.+|+|+||+|||.||++||.||+++++|.++++||||||++|
T Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vE 80 (701)
T COG0317 5 GCVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIE 80 (701)
T ss_pred ccccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHh
Confidence 4566777777665 566666666 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhcc
Q 002745 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (885)
Q Consensus 203 DT~~~t~e~I~~~FG~~Va~LV~glTk~s~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~ 282 (885)
||+ +|.++|++.||++|++||+||||+.+++++. +.+..|+||+||||+||++|+||++|||||||||||||.
T Consensus 81 Dt~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~ 153 (701)
T COG0317 81 DTP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLS------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLK 153 (701)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccC------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCc
Confidence 999 8999999999999999999999998886432 234458999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHhchHHHHHHHhcccccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q 002745 283 HMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362 (885)
Q Consensus 283 ~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 362 (885)
+.+++||+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.|.+|+++++++...|++.|.++
T Consensus 154 ~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~- 232 (701)
T COG0317 154 NLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAA- 232 (701)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 9889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCccccc
Q 002745 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 442 (885)
Q Consensus 363 ~l~~~~i~~~V~gR~K~~ySI~~Km~rk~~~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r 442 (885)
|+.++|.||+||+||||+||++|+..|+||+|++||||||++ ..|||++||+||.+|+|+|||
T Consensus 233 -----gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~------------~~dCY~~LGiVH~~~kp~Pgr 295 (701)
T COG0317 233 -----GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT------------IPDCYTALGIVHTLWKPIPGE 295 (701)
T ss_pred -----CCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC------------hHHHHHHHHHHHhcCcCCCCc
Confidence 489999999999999999999999999999999999999996 469999999999999999999
Q ss_pred ccccccCCCCCCccceeEEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCccccccccCCCCCCCCCCCcccccc
Q 002745 443 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (885)
Q Consensus 443 ~kDyIa~PK~NGYqSLHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (885)
||||||+||+||||||||||+++. |.++||||||++||++||+|+||||+||+++
T Consensus 296 FKDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~---------------------- 350 (701)
T COG0317 296 FDDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG---------------------- 350 (701)
T ss_pred cccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC----------------------
Confidence 999999999999999999999766 3799999999999999999999999999952
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCcceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEE
Q 002745 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 602 (885)
Q Consensus 523 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~ak 602 (885)
..+...+.||++|+|||++.. ++.||+|++|.|||+|+||||||+|++++||.||||+||||+|||++|++|+|||
T Consensus 351 -~~~~~~~~Wlr~lle~q~~~~---d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAk 426 (701)
T COG0317 351 -SAYEEKIAWLRQLLEWQEESA---DSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAK 426 (701)
T ss_pred -chhhHHHHHHHHHHHHHHhcC---CcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEE
Confidence 013456899999999999953 5799999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCccccCCChhHHHhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCC
Q 002745 603 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGE 682 (885)
Q Consensus 603 vNG~~v~l~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~~ 682 (885)
|||++|||+++|+|||+|||||+++. +|+++||+||+|+|||+|||+|||++.+++++.+|+++|++.+.++++
T Consensus 427 VnG~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~ 500 (701)
T COG0317 427 VNGRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGL 500 (701)
T ss_pred ECCEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999863 589999999999999999999999999999999999999988886444
Q ss_pred C------------CcchhhhccCCCChhhHHHHHHHHhhcCCCccccccccccCCccCCCCcccCC------CCcccccc
Q 002745 683 E------------SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGK------HNKRVHYV 744 (885)
Q Consensus 683 ~------------~~~edl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~------~akcC~PV 744 (885)
. .+.||||.++|.|+.++.+++..+. ...... ......... ......|.|. .++||+|+
T Consensus 501 ~~~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~-~~~~~~-~~~~~~~~~-~~~~~~v~G~~~l~~~~a~CC~Pi 577 (701)
T COG0317 501 PKELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQ-KLNEPP-LEKLSRKSI-GKGGVLVEGVGNLLTHLAKCCQPV 577 (701)
T ss_pred ChHHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHH-hccccc-hhhhhcccc-CCCceEEeccCCceeEeecCCCCC
Confidence 2 3569999999999999988887766 221111 000000000 0123345553 58999999
Q ss_pred CCC-eeEEeecCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeccccHHHHHHHHHHhC
Q 002745 745 GSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATV 820 (885)
Q Consensus 745 pGD-IVGyITsrGrGItrh--dC~N~~~l~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~a~DR~GlLadItsvIa~~ 820 (885)
||| |||||| +||||+|| ||+|+.++.. ..||||++ |+|+... ..|.+.|.|++.||+|+|++|+++|++.
T Consensus 578 pGD~IvG~it-~g~Gi~iHr~dC~~~~~~~~--~~per~i~---v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~ 651 (701)
T COG0317 578 PGDPIVGYIT-KGRGISIHRQDCPNFLQLAG--HAPERVID---VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANE 651 (701)
T ss_pred CCCcEEEEEe-cCCcEEEehhcChhHHHhhh--cCcceEEE---EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhC
Confidence 986 999997 99999998 8998887754 36889998 9998764 4577999999999999999999999999
Q ss_pred CcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 821 GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 821 ~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
++||.++++.++ +.+.+.|.|+|+ +|..||.+||++|+++++|++|++
T Consensus 652 ~~ni~~v~~~~~-~~~~~~~~~~i~v~n~~~L~~i~~~l~~~~~V~~v~R 700 (701)
T COG0317 652 KINVLGVNTRSD-KDQFATMQFTIEVKNLNHLGRVLARLKQLPDVISVRR 700 (701)
T ss_pred CCceEEeecccc-CCceEEEEEEEEECcHHHHHHHHHHHhcCCCeEEEEe
Confidence 999999999976 568999999999 999999999999999999999986
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=1.6e-172 Score=1517.87 Aligned_cols=686 Identities=26% Similarity=0.425 Sum_probs=600.3
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccc
Q 002745 123 KEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVE 202 (885)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvE 202 (885)
-+...+++.+.+. .|+ +++.+.+++||.||.++|.| |+||+|||+||++||.||++|+||.++|+||||||+||
T Consensus 13 ~~~~~~~l~~~~~---~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~ve 86 (743)
T PRK10872 13 GEFDPDKWIASLG---ITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLAD 86 (743)
T ss_pred cchhHHHHHHHHH---hhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHh
Confidence 3444555554442 577 89999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHhCHHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhcc
Q 002745 203 DTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLS 282 (885)
Q Consensus 203 DT~~~t~e~I~~~FG~~Va~LV~glTk~s~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~ 282 (885)
||+ +|.++|++.||++|+.||+||||++++....... ..+.+..|+|+||||||||++|+||+||||||||||||||.
T Consensus 87 dt~-~t~e~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~-~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~ 164 (743)
T PRK10872 87 ANV-VSEDVLRESVGKSIVNLIHGVRDMDAIRQLKATH-NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVK 164 (743)
T ss_pred cCC-CCHHHHHHHHCHHHHHHHHHHHHHHHhhhhhccc-ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhh
Confidence 998 8999999999999999999999988874211100 01234569999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHhchHHHHHHHhcccccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhc
Q 002745 283 HMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362 (885)
Q Consensus 283 ~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~ 362 (885)
++|++||++||+|||+||||||||||||+||||||||||+||+|+.|+.|++.|.+.+.+|+.+++++...|++.|.+.
T Consensus 165 ~~~~~kq~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~- 243 (743)
T PRK10872 165 DAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAE- 243 (743)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCccccc
Q 002745 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRA 442 (885)
Q Consensus 363 ~l~~~~i~~~V~gR~K~~ySI~~Km~rk~~~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r 442 (885)
|++++|.||+||+||||+||++|+.+|++|+|++||||||++ ..+||++||+||++|+|+|++
T Consensus 244 -----~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~------------~~dCY~vLg~ih~~~~pip~~ 306 (743)
T PRK10872 244 -----GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER------------LQDCYAALGIVHTHYRHLPDE 306 (743)
T ss_pred -----CCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC------------HHHHHHHHHHHHhhccCCcch
Confidence 588999999999999999999999999999999999999985 569999999999999999999
Q ss_pred ccccccCCCCCCccceeEEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCccccccccCCCCCCCCCCCcccccc
Q 002745 443 MKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (885)
Q Consensus 443 ~kDyIa~PK~NGYqSLHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (885)
|||||++||+||||||||||++++ |.++||||||++||.+||+|+||||+||++.. .+ +.
T Consensus 307 fkDYIa~PK~NGYqSLHttv~~~~---g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~-----------~~-~~----- 366 (743)
T PRK10872 307 FDDYVANPKPNGYQSIHTVVLGPG---GKTVEIQIRTRQMHEDAELGVAAHWKYKEGAA-----------AG-GG----- 366 (743)
T ss_pred hhhcccCCCCCCcceeEEEEECCC---CcEEEEEEEcHHHHHHHhhhHHHHHhccCCCC-----------cc-cc-----
Confidence 999999999999999999998654 48999999999999999999999999998521 00 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCcceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEE
Q 002745 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAK 602 (885)
Q Consensus 523 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~ak 602 (885)
....+.+++||++|+|||++. .++.||++.+|.|||+|+||||||+|+++.||+||||+||||+|||++|++|+||+
T Consensus 367 ~~~~~~~~~wLr~lle~~~~~---~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAk 443 (743)
T PRK10872 367 RSGHEDRIAWLRKLIAWQEEM---ADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAK 443 (743)
T ss_pred ccchHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEE
Confidence 112455689999999999984 36899999999999999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCccCCCCCeEEEEecCCCCCccccCCChhHHH----hhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 002745 603 VNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLE----HAKTRSARHKIMKFLREQAALSASEITADTVGDFVA 678 (885)
Q Consensus 603 vNG~~v~l~~~L~~gd~VeIit~~~~~~~~~~~p~~~WL~----~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~ 678 (885)
|||++|||+++|++||+|||+|++++ .|++|||+ ||+|+|||+|||+|||+++++++++.|++.|++.++
T Consensus 444 vng~~v~l~~~L~~GD~VeIits~~~------~Ps~dWL~~~lg~v~T~rAR~kIr~~~k~~~~~~~i~~Gr~lL~k~l~ 517 (743)
T PRK10872 444 IGGRIVPFTYQLQMGDQIEIITQKQP------NPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELE 517 (743)
T ss_pred ECCEECCCCcCCCCCCEEEEEeCCCC------CCChhHhccccCeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998864 48999999 999999999999999999999999999999999888
Q ss_pred hcCCC--------------CcchhhhccCCCChhhHHHHHHHHhhc-CCCc-cc----c-cccccc----C-CccCCC-C
Q 002745 679 DSGEE--------------SEVEDLSDGSKQDKPLWEKILMNVVQM-SSPV-RN----S-KAVCSD----D-NASLWA-P 731 (885)
Q Consensus 679 ~~~~~--------------~~~edl~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~-~~~~~~----~-~~~~~~-~ 731 (885)
+++++ .+.+|||.++|.|+.++.+++..+... .... .. . ...... . ...... +
T Consensus 518 ~~~~~~~~~~~~l~~~~~~~~~ddl~~~iG~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 597 (743)
T PRK10872 518 HLGISLKEAEKHLLPRYNFNSLDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYTPQNRSKDNGRV 597 (743)
T ss_pred hcCCChHHHHHHHHHHhCCCCHHHHHHHhcCCCCCHHHHHHHHHHHhcccccccchhhhhhhhcccccccccccCCCCeE
Confidence 77642 356899999999999999888776321 1000 00 0 000000 0 000111 3
Q ss_pred cccCC------CCccccccCCC-eeEEeecCCCceEEe--ecCCccchhhhCCCccccccccccccCCC-CCceeEEEEE
Q 002745 732 KVNGK------HNKRVHYVGSK-AEGELSSQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNL-EGHSIQWFSV 801 (885)
Q Consensus 732 ~i~g~------~akcC~PVpGD-IVGyITsrGrGItrh--dC~N~~~l~e~~~~~er~i~~~~v~W~~~-~~~~~~~I~V 801 (885)
.|.|. .++||+|+||| |||||| +|+||+|| +|||+.++.+ .+++||++ |+|+.. ...+.+.|.|
T Consensus 598 ~I~G~~~~lv~~A~CC~PiPGD~IvG~iT-rGrGI~VHr~dC~nl~~l~~--~~~eR~I~---V~W~~~~~~~~~v~I~I 671 (743)
T PRK10872 598 VVEGVGNLMHHIARCCQPIPGDEIVGFIT-QGRGISIHRADCEQLAELRS--HAPERIVD---AVWGESYSSGYSLVVRV 671 (743)
T ss_pred EEecCCCceEEECCCCCCCCCCcEEEEEE-CCCCEEEEcccChhhHhhhh--cCCceEEE---eEecCCCCceeEEEEEE
Confidence 45554 48999999986 999997 99999998 8888876643 35788998 999754 2346789999
Q ss_pred EEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 802 VCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 802 ~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
++.||+|+|+||+++|++.++||.++++.++..++.+.|+|+|+ .|.+||.++|++|++++||++|.|
T Consensus 672 ~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R 740 (743)
T PRK10872 672 TANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 740 (743)
T ss_pred EEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEe
Confidence 99999999999999999999999999998654357899999999 999999999999999999999987
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=2.8e-169 Score=1495.43 Aligned_cols=660 Identities=31% Similarity=0.507 Sum_probs=590.1
Q ss_pred hcCCChhhHHHHHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhC
Q 002745 138 ISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG 217 (885)
Q Consensus 138 ~~y~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~t~e~I~~~FG 217 (885)
..|+++++.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++|+||||||++|||+ +|.++|++.||
T Consensus 12 ~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~-~t~e~i~~~FG 90 (702)
T PRK11092 12 QTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTP-ATYQDMEQLFG 90 (702)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCC-CCHHHHHHHHC
Confidence 36999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhccCCCCCchhhHHHHHH
Q 002745 218 ATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETL 297 (885)
Q Consensus 218 ~~Va~LV~glTk~s~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~~~~~~kq~~iA~ETl 297 (885)
++|+.||+||||++++.. . .....|+|++||||+||++|+||++|||||||||||||..+|+++|++||+||+
T Consensus 91 ~~Va~lV~gvTk~~~l~~---~----~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~ETl 163 (702)
T PRK11092 91 KSVAELVEGVSKLDKLKF---R----DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETL 163 (702)
T ss_pred HHHHHHHHHHHhhccccc---c----chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHHHH
Confidence 999999999999877632 1 123458999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchHHHHHHHhcccccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEe
Q 002745 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 377 (885)
Q Consensus 298 ~iyaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~gR~ 377 (885)
+||||||||||||+||||||||||+||+|++|+.|++.|.+++.+|+++++++...|++.|++. +|+++|.||+
T Consensus 164 ~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~------~i~~~i~~R~ 237 (702)
T PRK11092 164 EIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEA------GIPCRVSGRE 237 (702)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999887 5899999999
Q ss_pred cChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCcccccccccccCCCCCCccc
Q 002745 378 KEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQS 457 (885)
Q Consensus 378 K~~ySI~~Km~rk~~~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r~kDyIa~PK~NGYqS 457 (885)
||+||||+||++|+.+|++|+|++|+||||++ ..+||++||+||++|+|+|++|||||+.||+|||||
T Consensus 238 K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~------------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqS 305 (702)
T PRK11092 238 KHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD------------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQS 305 (702)
T ss_pred CCHHHHHHHHHHcCCChhHhccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCce
Confidence 99999999999999999999999999999985 579999999999999999999999999999999999
Q ss_pred eeEEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 002745 458 LHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 537 (885)
Q Consensus 458 LHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~ 537 (885)
|||||+++. +.++||||||.+||.+||+|+||||+||++.. . + .....+.++||++|+
T Consensus 306 LHt~v~g~~---g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~-----------~--~------~~~~~~~~~wlr~ll 363 (702)
T PRK11092 306 LHTSMIGPH---GVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGE-----------T--G------TTAQIRAQRWMQSLL 363 (702)
T ss_pred EEEEEECCC---CcEEEEEEEcHHHHHHHhhhhHhhhhhccCCC-----------c--c------chhHHHHHHHHHHHH
Confidence 999998755 47999999999999999999999999998420 0 0 011233489999999
Q ss_pred HHHHhhhcCCCchhhhhhhcccccCcceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCC
Q 002745 538 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANA 617 (885)
Q Consensus 538 e~~~~~~~~~~~~ef~~~~k~dl~~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~g 617 (885)
+||++. .++.||++.+|.|||+|+||||||+|+++.||+||||+||||+|||++|++|+||||||++|||+|+|+||
T Consensus 364 ~~~~~~---~~~~ef~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~G 440 (702)
T PRK11092 364 ELQQSA---GSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSG 440 (702)
T ss_pred HHHhhc---CChHHHHHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCC
Confidence 999974 36889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCccccCCChhHHHhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcC-CC-------------
Q 002745 618 EVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSG-EE------------- 683 (885)
Q Consensus 618 d~VeIit~~~~~~~~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~-~~------------- 683 (885)
|+|||+|++++ +|++|||+||+|+|||+|||+|||++++++++++|+++|++.|++++ +.
T Consensus 441 d~VeIiT~~~~------~P~~dWL~~v~T~rAr~kIr~~~r~~~~~~~i~~Gr~lL~~~l~~~~~~~~~~~~~l~~~~~~ 514 (702)
T PRK11092 441 QTVEIITAPGA------RPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLDEIPQENIQRELDR 514 (702)
T ss_pred CEEEEEeCCCC------CCChHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHHHH
Confidence 99999998754 38999999999999999999999999999999999999998877653 00
Q ss_pred ---CcchhhhccCCCChhhHHHHHHHHhhcCCCccccccccccCCccCCCCcccCC------CCccccccCCC-eeEEee
Q 002745 684 ---SEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNASLWAPKVNGK------HNKRVHYVGSK-AEGELS 753 (885)
Q Consensus 684 ---~~~edl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~------~akcC~PVpGD-IVGyIT 753 (885)
.+.+||+.++|.|+.++.+++..+.....+ ...+.. ....+.|.|. .++||+|+||| ||||||
T Consensus 515 ~~~~~~d~l~~~iG~g~i~~~~v~~~~~~~~~~-----~~~~~~--~~~~i~I~G~~~~~v~~A~CC~PiPGD~IvG~it 587 (702)
T PRK11092 515 MKLATLDDLLAEIGLGNAMSVVVAKNLLGDDAE-----LPTATS--SHGKLPIKGADGVLITFAKCCRPIPGDPIIAHVS 587 (702)
T ss_pred cCCCCHHHHHHHHcCCCCCHHHHHHHhhhhccc-----cccccc--CCCceEEeccCCceEEeCCCCCCCCCCcEEEEEE
Confidence 255888888999998888888766321100 000000 1112334443 48999999986 999996
Q ss_pred cCCCceEEe--ecCCccchhhhCCCccccccccccccCCCC-CceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEe
Q 002745 754 SQENSFAKM--MHANVPMYKEVLPGLESWQASKIATWHNLE-GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAE 830 (885)
Q Consensus 754 srGrGItrh--dC~N~~~l~e~~~~~er~i~~~~v~W~~~~-~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~ 830 (885)
+|+||+|| +|+|+.++. .+++||++ |+|+... ..+.+.|.|++.||+|+|++|+++|++.++||.++++.
T Consensus 588 -~grGI~VHr~dC~nl~~l~---~~~er~i~---v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~ 660 (702)
T PRK11092 588 -PGKGLVIHHESCRNIRGYQ---KEPEKFMA---VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE 660 (702)
T ss_pred -CCCCEEEECcCCchhhhhh---cCcceeEE---eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE
Confidence 99999998 888887662 35789998 9997542 34678999999999999999999999999999999987
Q ss_pred eecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 831 IDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 831 ~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
+. +++.+.+.|+|+ .|.+||.+||.+|++++||++|.|
T Consensus 661 ~~-~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R 699 (702)
T PRK11092 661 EK-DGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTR 699 (702)
T ss_pred Ec-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEE
Confidence 55 357899999999 999999999999999999999987
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=1.5e-159 Score=1416.54 Aligned_cols=650 Identities=37% Similarity=0.571 Sum_probs=577.8
Q ss_pred HHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhCHHHHHHHhhhcccc
Q 002745 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (885)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~t~e~I~~~FG~~Va~LV~glTk~s 231 (885)
|+.||.++|.||+|++|+||+.||++||.+|+++++|.++++||||||++|||+ +|.++|++.||++|+.||++|||++
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~-~t~e~i~~~FG~~Va~lV~~vTk~~ 79 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTP-VTEEEIEEEFGEEVAELVDGVTKIT 79 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCC-CCHHHHHHHHCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999998 8999999999999999999999987
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhccCCCCCchhhHHHHHHHHHHHHHHHhchHH
Q 002745 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311 (885)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ 311 (885)
++.. . .....|+|++||||++|+.|+||++|||||||||||+|..+|+++|++||+||++||||||||||||+
T Consensus 80 ~~~~---~----~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ 152 (683)
T TIGR00691 80 KLKK---K----SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSS 152 (683)
T ss_pred cccc---c----hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 7642 1 23446899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEecChHHHHHHHHhcC
Q 002745 312 IKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSR 391 (885)
Q Consensus 312 ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~gR~K~~ySI~~Km~rk~ 391 (885)
||+|||||||+||+|++|+.|++.|++.+.+|+.++..+...|++.|.+. +++++|+||+||+||||+||++|+
T Consensus 153 ik~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~------~i~~~i~~R~K~~~Si~~Km~~k~ 226 (683)
T TIGR00691 153 IKTELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDS------GIEAELEGRSKHLYSIYQKMTRKG 226 (683)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCceEEEeeeCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999876 478999999999999999999999
Q ss_pred CCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCcccccccccccCCCCCCccceeEEEeccCCccce
Q 002745 392 GSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (885)
Q Consensus 392 ~~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r~kDyIa~PK~NGYqSLHttV~~~~~~~~~ 471 (885)
.+|++|+|++|+||||++ ..+||++||+||++|+|+|++|||||+.||+||||||||+|+++. +.
T Consensus 227 ~~~~~i~Di~~~RIi~~~------------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~~---g~ 291 (683)
T TIGR00691 227 QNFDEIHDLLAIRIIVKS------------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGPK---GL 291 (683)
T ss_pred CCHHHcccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcCC---CC
Confidence 999999999999999985 579999999999999999999999999999999999999998644 48
Q ss_pred eEEEEEechhHHHHHHHhHHhhccCCccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHhhhcCCCchh
Q 002745 472 RLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSRE 551 (885)
Q Consensus 472 ~vEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~e~~~~~~~~~~~~e 551 (885)
++||||||.+||.|||+|+||||+||++.. + ....+.++.||++|++||++. .++.+
T Consensus 292 ~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~--------------~------~~~~~~~~~wl~~~~~~~~~~---~~~~~ 348 (683)
T TIGR00691 292 PVEIQIRTEDMDRVAEYGIAAHWIYKEGNP--------------Q------KEALIDDMRWLNYLVEWQQES---ANFFE 348 (683)
T ss_pred EEEEEEEehHHHHHHHHHHHHHHhhcCCCC--------------c------chhHHHHHHHHHHHHHHHhhc---ccchh
Confidence 999999999999999999999999998420 0 011345689999999999984 36889
Q ss_pred hhhhhcccccCcceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCCCc
Q 002745 552 FVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSK 631 (885)
Q Consensus 552 f~~~~k~dl~~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~~~~~~~ 631 (885)
|++.+|.|||+++||||||+|+++.||+||||+||||+|||++|++|++|+|||+.|||+++|++||+|||+|++++
T Consensus 349 ~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~--- 425 (683)
T TIGR00691 349 FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS--- 425 (683)
T ss_pred HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cccCCChhHHHhhcChhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcCCC-----------------CcchhhhccCC
Q 002745 632 SAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEE-----------------SEVEDLSDGSK 694 (885)
Q Consensus 632 ~~~~p~~~WL~~v~T~~Ar~kIr~~l~~~~~~~~~~~g~~~l~~~~~~~~~~-----------------~~~edl~~~~~ 694 (885)
+|+++||+||+|+|||++||+|||++++++++++|++.|++.+++++++ .+.+||+.++|
T Consensus 426 ---~P~~dWL~~v~T~rAR~kIr~~~k~~~r~~~i~~G~~lLek~l~~~~~~~~~~~~~~~~~l~~~~~~~~ddl~~~iG 502 (683)
T TIGR00691 426 ---NPSVIWLNFVVTSKARNKIRQWLKKLRREVAISEGKNILEKELGRSGLKLEDLTQYIQKRLNRLRFKKLSELLAEIG 502 (683)
T ss_pred ---CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHcCCCCHHHHHHHHh
Confidence 4899999999999999999999999999999999999998888876653 24688889999
Q ss_pred CChhhHHHHHHHHhhcCC-Cc-cc-ccccc-ccC-CccCCCCcccCC------CCccccccCCC-eeEEeecCCCceEEe
Q 002745 695 QDKPLWEKILMNVVQMSS-PV-RN-SKAVC-SDD-NASLWAPKVNGK------HNKRVHYVGSK-AEGELSSQENSFAKM 762 (885)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~-~~-~~-~~~~~-~~~-~~~~~~~~i~g~------~akcC~PVpGD-IVGyITsrGrGItrh 762 (885)
.|...+.+++..+..... .. .. ...+. +.. ........+.|. .++||+|+||| |||||| +|+||+||
T Consensus 503 ~g~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~~~~v~~A~CC~PvPGD~IiG~it-~g~Gi~VH 581 (683)
T TIGR00691 503 KGNFSSKEVAKLLAQNNSKWQALTKPLKFAFSPKVFENSSFESIEGIEITKIVIAKCCSPIPGDPIIGIVT-KGKGLSVH 581 (683)
T ss_pred CCCCCHHHHHHHHHHhhhcccccchhhhcccccccccCCCceeeecCCCceeEECCCCCCCCCCcEEEEEE-CCCCEEEE
Confidence 999999888887743110 00 00 00000 000 001112345553 48999999996 999996 99999998
Q ss_pred --ecCCccchhhhCCCccccccccccccCCC-CCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEE
Q 002745 763 --MHANVPMYKEVLPGLESWQASKIATWHNL-EGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAV 839 (885)
Q Consensus 763 --dC~N~~~l~e~~~~~er~i~~~~v~W~~~-~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~ 839 (885)
+|+|+.++ .++||++ |+|+.. ...+.+.|.|++.||+|+|++|+++|++.++||.++++.++ +++.+.
T Consensus 582 r~dC~nl~~~-----~~er~I~---v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~ 652 (683)
T TIGR00691 582 HKDCKNLKNY-----KQEKIIE---VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAI 652 (683)
T ss_pred ccCchhhhhc-----CcccEEE---EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEE
Confidence 77777554 2478888 999754 23467899999999999999999999999999999999765 357899
Q ss_pred EEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 840 MLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 840 m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
|.|+|+ .|.+||.++|.+|++++||++|.|
T Consensus 653 ~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~R 683 (683)
T TIGR00691 653 LNITVEIKNYKHLLKIMLKIKTKNDVIVVKR 683 (683)
T ss_pred EEEEEEECCHHHHHHHHHHHhCCCCceEEeC
Confidence 999999 999999999999999999999975
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-79 Score=657.60 Aligned_cols=428 Identities=32% Similarity=0.476 Sum_probs=357.4
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCCccc-CCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhCHH
Q 002745 141 LSPNELELVRRALMLAFEAHDGQKRRS-GEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (885)
Q Consensus 141 ~~~~~~~~l~~A~~~A~~aH~gQ~Rks-GePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~t~e~I~~~FG~~ 219 (885)
+.-.+.+++-+|+.+|+.+|.+|+|++ |+||+.|++.+|.||+.+++|.++++||+||||||||. +|.++|+++||.+
T Consensus 69 ~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~-~S~eeI~~~FG~g 147 (543)
T KOG1157|consen 69 HKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTF-MSYEEILRHFGTG 147 (543)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhcc-CCHHHHHHHhCcc
Confidence 344566789999999999999999996 45999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhccCCCCCchhhHHHHHHHH
Q 002745 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQV 299 (885)
Q Consensus 220 Va~LV~glTk~s~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~~~~~~kq~~iA~ETl~i 299 (885)
|++||+++|+++.+.+..++ ...|.+++| |+.++.. .|++||||||+|||||+|.++||-+|++.++||+.|
T Consensus 148 Va~LV~EvtddKnL~K~eRk------~l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfI 219 (543)
T KOG1157|consen 148 VADLVEEVTDDKNLSKLERK------NLTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFI 219 (543)
T ss_pred HHHHHHHHhcccchhHHHHH------HHHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHH
Confidence 99999999999988765443 224788888 6777765 999999999999999999999999999999999999
Q ss_pred HHHHHHHhchHHHHHHHhcccccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEecC
Q 002745 300 FAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKE 379 (885)
Q Consensus 300 yaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~gR~K~ 379 (885)
|||+|+++|++..+.+||+|+|+|++|..|.++...|+.... +..|...+..|++.|..+++ ...-|.||.|+
T Consensus 220 wapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~--~~mi~~~~~~l~~~l~~a~i-----~~~~i~gr~ks 292 (543)
T KOG1157|consen 220 WAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFD--EAMITSAIEKLEQALKKAGI-----SYHVIKGRHKS 292 (543)
T ss_pred hhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccc-----eeEEEecchhh
Confidence 999999999999999999999999999999999999999876 77888889999999988753 23689999999
Q ss_pred hHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCcccccccccccCCCCCCcccee
Q 002745 380 PYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLH 459 (885)
Q Consensus 380 ~ySI~~Km~rk~~~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r~kDyIa~PK~NGYqSLH 459 (885)
+||||+||.|++...++|+||.|+|+||++. .+||+++|+||++|+.+|++.||||+.||.|||||||
T Consensus 293 ~ysi~~kmlk~~~~~dei~di~glr~i~~~~------------~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh 360 (543)
T KOG1157|consen 293 LYSIYKKMLKKKLTPDEIHDIHGLRLIVDNE------------SDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLH 360 (543)
T ss_pred HHHHHHHHHhcCCCHHHhhhhcceEEEEcCc------------hHHHHHHHHHHHHHHhCcchhhhhhcCccccccceee
Confidence 9999999999999999999999999999974 4999999999999999999999999999999999999
Q ss_pred EEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCccccccccCCCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 002745 460 TTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREW 539 (885)
Q Consensus 460 ttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~e~ 539 (885)
|+|...+ ..|+||||||.+||.-||+|.||||+||++. .+....+++.|.+-...|
T Consensus 361 ~~v~~d~---~~plevqirt~em~~~a~~g~aah~~yk~g~---------------------~~~~~~q~~~~~~~~~~~ 416 (543)
T KOG1157|consen 361 TVVMVDG---TRPLEVQIRTMEMHLQAEFGFAAHWRYKEGK---------------------TSSFVLQMVEWARWVVTW 416 (543)
T ss_pred eEEecCC---cceeEEEEeeeccccccccchhhHhhhhcCC---------------------CCHHHHHHHHHHHHHHHH
Confidence 9997644 4799999999999999999999999999853 122345679999999999
Q ss_pred HHhhhc-CCCchhhhhhhcc-cccCcceEeecCCC----------------ceEecCCCCcHhHHHHhccccccc-----
Q 002745 540 QEEFVG-NMTSREFVDTITR-DLLGSRVFVFTPRG----------------EIKNLPKGATVVDYAYMIHTEIGN----- 596 (885)
Q Consensus 540 ~~~~~~-~~~~~ef~~~~k~-dl~~~~V~VftP~G----------------~i~~lp~gsT~lDfAy~ih~~ig~----- 596 (885)
.-+... +.++. --.+.|. .--.|.+|.+.|+| .+-.+|+.+|++|.--.-.+.-..
T Consensus 417 ~~~~~~kd~ss~-~~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~ 495 (543)
T KOG1157|consen 417 HAEIMSKDISSI-KSSSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQ 495 (543)
T ss_pred HHHHHhcccccc-cccccCCCCccccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHHHhhccCCCCccchhhhc
Confidence 876531 11111 1112332 22368899999975 244578888888874322221000
Q ss_pred ---ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 597 ---KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 597 ---~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
....-+.|. ++.+.++-||+||...
T Consensus 496 ~~~e~lr~~~~~---d~~~k~~m~d~~~~~p 523 (543)
T KOG1157|consen 496 IPAEELRPRLNQ---DLKYKLKMGDVVELTP 523 (543)
T ss_pred CcHHHhhhhhcc---chhHHhhhcchhhcCC
Confidence 111223333 6677788888888754
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=1.3e-38 Score=315.73 Aligned_cols=153 Identities=55% Similarity=0.843 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccCCCCCHHHHHHHhCHHHHHHHhhhcccc
Q 002745 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (885)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~t~e~I~~~FG~~Va~LV~glTk~s 231 (885)
|+.||.++|.||++++|+||+.||++||.+|.++|+|+++++||||||++|||. .+ ++|++.||++|+++|.++|+++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~-~~-~~i~~~fg~~V~~lV~~lt~~~ 78 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTE-TT-EDIEERFGEDVADLVDALTKIK 78 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS----HHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcC-CH-HHHHHccChHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999996 56 9999999999999999999988
Q ss_pred cccccccccCCcchhhhhHHHHHHHHHhccCCceEEeehhhhHHhhhhhccCCCCCchhhHHHHHHHHHHHHHHHhchH
Q 002745 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMY 310 (885)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~lRkmLlAm~~DiRvvLIKLADRLhNmRtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~ 310 (885)
.+++.. .......+.+++|+||++|++|+||++||||||+||||++...++++++++|+||+++|+|||||||||
T Consensus 79 ~~~~~~----~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 79 KLSKKP----WEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp TS-HH-------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc----chhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 775431 012456788999999999999999999999999999999999999999999999999999999999997
No 7
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.93 E-value=6.1e-26 Score=218.71 Aligned_cols=123 Identities=32% Similarity=0.507 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhcccccccceeEEEEEecChHHHHHHHHhcCCCC---CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHH
Q 002745 351 NKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSI---NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYH 427 (885)
Q Consensus 351 ~~~L~~~L~~~~~l~~~~i~~~V~gR~K~~ySI~~Km~rk~~~~---~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~ 427 (885)
...|++.|++.+.. +..+.|.+|+|+++|+++||.+++... ++|+|++|+|||++. .+|||.
T Consensus 4 ~~~l~~~L~~~~~~---~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~------------~~d~~~ 68 (129)
T cd05399 4 LEEIADLLRDAGII---GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF------------VDDCYR 68 (129)
T ss_pred HHHHHHHHHHcCCC---CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC------------HHHHHH
Confidence 34556666655310 116799999999999999999998777 999999999999874 579999
Q ss_pred HHHHhhccCCcccccccccccCCCCCCccceeEEEeccCCccceeEEEEEechhHHHHHHH
Q 002745 428 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAER 488 (885)
Q Consensus 428 vLg~Ih~~~~pip~r~kDyIa~PK~NGYqSLHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~ 488 (885)
++++|+..|+++|++++|||+.||+|||||+|++|..+....+.++||||||..||.|||.
T Consensus 69 v~~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 69 VLDLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999964321124799999999999999984
No 8
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.93 E-value=4.2e-26 Score=215.19 Aligned_cols=110 Identities=33% Similarity=0.479 Sum_probs=91.6
Q ss_pred EEecChHHHHHHHHhcCC---CCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCcccccccccccCCC
Q 002745 375 SVCKEPYSIYKAVLKSRG---SINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPK 451 (885)
Q Consensus 375 gR~K~~ySI~~Km~rk~~---~~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r~kDyIa~PK 451 (885)
+|+|+++|+++|+.+++. .+.+|+|++|+|||+... ++||.++++|++.|.+.+.+++|||+.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~------------~d~~~v~~~l~~~~~~~~~~~~d~i~~~~ 68 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFP------------DDCYKVLGLLHKLFDVKIDRSKDYIANPK 68 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSC------------CHHHHHHHHHHTHSSCEEEEEEETTTT--
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeH------------HHHHHHHHHHHHcCCcccccccccccccc
Confidence 699999999999999874 799999999999998864 59999999999999999999999999999
Q ss_pred CCCccceeEEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCc
Q 002745 452 PNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (885)
Q Consensus 452 ~NGYqSLHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~ 498 (885)
.|||||+|++|.......+.++||||||..||.||| +..||.||.
T Consensus 69 ~~GYrs~H~~v~~~~~~~~~~~EiQIrT~~~~~wae--i~h~~~YK~ 113 (115)
T PF04607_consen 69 SNGYRSLHYIVPENESFKGYPFEIQIRTLLQHAWAE--IEHDLRYKS 113 (115)
T ss_dssp TTS--EEEEEEEETTECEEEEEEEEEEEHHHHHHHH--HHHHHHHHC
T ss_pred cCCcEeeEeeeeecccCCCceeeeeeccHHHHHHHH--HHHHHhCCC
Confidence 999999999993222234689999999999999999 555677774
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.90 E-value=8.3e-24 Score=218.93 Aligned_cols=116 Identities=34% Similarity=0.441 Sum_probs=102.0
Q ss_pred eEEEEEecChHHHHHHHHhcCCCC------CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccCCccccccc
Q 002745 371 TEIRSVCKEPYSIYKAVLKSRGSI------NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (885)
Q Consensus 371 ~~V~gR~K~~ySI~~Km~rk~~~~------~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~~~~pip~r~k 444 (885)
-.|++|+|++.||..|++|||.++ ++|+||+|+||+ |.+++|.|.+..+|.+......-..|
T Consensus 53 e~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~------------c~F~~DI~~v~~~l~~~~d~~iv~~k 120 (231)
T COG2357 53 EHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRII------------CQFVDDIYRVVDLLKSRKDFTIVEEK 120 (231)
T ss_pred HHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEe------------eehHhhHHHHHHHHhcccCccchhHH
Confidence 479999999999999999999443 689999999999 45678999999999987666566899
Q ss_pred ccccCCCCCCccceeEEE-ecc---CCccceeEEEEEechhHHHHHHHhHHhhccCCc
Q 002745 445 DYIATPKPNGYQSLHTTL-IPF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (885)
Q Consensus 445 DyIa~PK~NGYqSLHttV-~~~---~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~ 498 (885)
|||.+||+|||||+|++| +|- .+.....+||||||..||.||++.|...|+|.+
T Consensus 121 Dyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~l~YKy~~ 178 (231)
T COG2357 121 DYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHKLRYKYGG 178 (231)
T ss_pred HHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHHhhccccc
Confidence 999999999999999999 442 234568999999999999999999999999985
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.68 E-value=2.6e-17 Score=138.94 Aligned_cols=60 Identities=53% Similarity=0.854 Sum_probs=58.0
Q ss_pred eEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 565 V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
|+||+|||++++||+|+||+||||+||+++++++++|+|||+.++|+++|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999999999999999999999999999999999999999999999999998
No 11
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=99.44 E-value=5.9e-13 Score=117.93 Aligned_cols=77 Identities=27% Similarity=0.362 Sum_probs=67.5
Q ss_pred CceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 793 GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 793 ~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
..|.+.|.|++.||+|+|+||+++|++.++||.++++.+..+++.+.+.|+|+ +|.+||.++|++|++++||++|.|
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~R 80 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVER 80 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEEE
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEEC
Confidence 34788999999999999999999999999999999998753368999999999 999999999999999999999976
No 12
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.22 E-value=1e-11 Score=109.53 Aligned_cols=60 Identities=35% Similarity=0.514 Sum_probs=53.8
Q ss_pred eEeec-CCC------ceEecCCCCcHhHHHHhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 002745 565 VFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 565 V~Vft-P~G------~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv-------NG~~v~l~~~L~~gd~VeIit 624 (885)
|.||| |+| +.+.||+|||+.||||+||+++++.+..|+| +|+.|+++++|++||+|||++
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 45777 333 7899999999999999999999999998886 999999999999999999985
No 13
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.13 E-value=4.5e-11 Score=105.73 Aligned_cols=51 Identities=37% Similarity=0.622 Sum_probs=47.3
Q ss_pred ceEecCCCCcHhHHHHhcccccccceEE---EEECCEecCCCccCCCCCeEEEEe
Q 002745 573 EIKNLPKGATVVDYAYMIHTEIGNKMVA---AKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~ig~~~~~---akvNG~~v~l~~~L~~gd~VeIit 624 (885)
+.+.||+|+|+.||||+||+++|++++. ++ ||+.++++++|++||+|+|+|
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 6899999999999999999999999654 56 999999999999999999996
No 14
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=99.09 E-value=3.7e-10 Score=98.87 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=62.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 870 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~g 870 (885)
+|.|++.||+|+|+||+++|++.++||.++++.++ +. +.|+++ .|.+||.+++++|++++||++|.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~--i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~ 70 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GR--IYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTV 70 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---Ce--EEEEeEecCHHHHHHHHHHHhCCCCceEEEEe
Confidence 58999999999999999999999999999998643 33 888888 9999999999999999999999874
No 15
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.03 E-value=1.5e-09 Score=94.28 Aligned_cols=69 Identities=23% Similarity=0.209 Sum_probs=63.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
|.|++.||+|+|++|+++|++.|+||.++++... ..+.+.+.|+|+ .|.+||.+++.+|++++||+--+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~~ 71 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVDAPSEEHAETIVAAVRALPEVKVLS 71 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEEE
Confidence 7899999999999999999999999999998754 357899999999 99999999999999999998543
No 16
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=2.4e-09 Score=93.12 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=64.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHH-HHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-SLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e-~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.|++.||+|+|++|+++|++.++||..++.... ..+.+.+.|+++ .+.+ ||.+++++|++++||++|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 58999999999999999999999999999987533 246799999999 9998 99999999999999999974
No 17
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.87 E-value=5.5e-09 Score=86.97 Aligned_cols=60 Identities=63% Similarity=1.042 Sum_probs=57.4
Q ss_pred eEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 565 V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
||||+|+|+.+++|.|.|+.|++..++..+....+++++||+.++++++|.+||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 689999999999999999999999999988889999999999999999999999999985
No 18
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=98.62 E-value=2.3e-07 Score=78.55 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=62.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.|.|.+.|++|+|++|+++|++.++||.++......+.+.+.+.|+++ .+ +++..++++|++++||.+|+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~v~~v~ 72 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD-DVIEQIVKQLNKLVDVLKVS 72 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCH-HHHHHHHHHHhCCccEEEeC
Confidence 378899999999999999999999999999876442457788999998 78 99999999999999999985
No 19
>PRK04435 hypothetical protein; Provisional
Probab=98.56 E-value=3.8e-07 Score=90.75 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=66.6
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHH-HHHHHHHHhccccCeeeccc
Q 002745 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-SLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 795 ~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e-~L~rll~kI~~V~gV~~V~~ 869 (885)
..+.|.+.+.|++|+|++|+++|++.++||..++.... .++.+.+.|+|+ .+.+ +|+.++++|++++||.+|..
T Consensus 68 r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i 143 (147)
T PRK04435 68 KIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVEL 143 (147)
T ss_pred cEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEE
Confidence 46789999999999999999999999999999986533 357899999999 8987 99999999999999999874
No 20
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.54 E-value=2.9e-07 Score=79.37 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=61.6
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeec
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 867 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V 867 (885)
|+|.+.|++|+|++|+++|++.++||.+++.....+.+.+.+.+.++ .+.++|..++++|++++||.++
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~ 72 (79)
T cd04881 3 LRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGV 72 (79)
T ss_pred EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCC
Confidence 78899999999999999999999999999875433237788999998 9999999999999999999875
No 21
>PRK08577 hypothetical protein; Provisional
Probab=98.49 E-value=7.2e-07 Score=87.44 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=65.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCH-HHHHHHHHHhccccCeeecc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-ESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~-e~L~rll~kI~~V~gV~~V~ 868 (885)
.+.|.|.+.|++|+|++|+++|++.++||.++++.+...++.+.+.|+++ .+. .+|..++++|++++||.+|.
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~ 130 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVE 130 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEE
Confidence 56799999999999999999999999999999887654457788899999 776 89999999999999999986
No 22
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.45 E-value=1.9e-07 Score=79.72 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=57.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
|.+.+.|++|+|++|+++|++.++||.+++..++ .+.+.+.|+++ . ++..++++|++++||++|.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~--~~~a~~~~~~~~~---~l~~li~~l~~~~~V~~v~ 67 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTR--GEIGYVVIDIDSE---VSEELLEALRAIPGTIRVR 67 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCC--CCEEEEEEEcCCC---CCHHHHHHHHcCCCeEEEE
Confidence 5678999999999999999999999999876532 27899999988 4 9999999999999999986
No 23
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.45 E-value=4.7e-07 Score=73.71 Aligned_cols=59 Identities=44% Similarity=0.771 Sum_probs=54.9
Q ss_pred EeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 566 ~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
.++.++|+.+.+|+|+|+.|++..+|.......+++++||++++|+++|.+||.|+++|
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 35678899999999999999999999988889999999999999999999999999985
No 24
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=98.40 E-value=1.8e-06 Score=76.50 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=65.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.|.+.+.|++|+|+.|+.+++..|.||.++++....+.+...|++++.+|.+.+++++++|.++.+|++|.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 48899999999999999999999999999998765566889999999889999999999999999999986
No 25
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=98.40 E-value=1.6e-06 Score=77.93 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=66.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.|.+.+.|++|+|+.||.+++..|.||.|+++....+.+..+|+++++ +|.+.+++++++|+++.+|++|.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~ 75 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVE 75 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEE
Confidence 488999999999999999999999999999987666678999999998 99999999999999999999986
No 26
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.39 E-value=4.2e-07 Score=80.65 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=49.0
Q ss_pred ceEecCCCCcHhHHHHhcccccccceEEEEECC-EecCCCccCCCCCeEEEEe
Q 002745 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-NLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG-~~v~l~~~L~~gd~VeIit 624 (885)
+.+.||+|+|+.|||+.||+++....+-|.|-| +.+.+++.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 688999999999999999999999999999887 8999999999999999975
No 27
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.35 E-value=1.1e-06 Score=74.01 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=58.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
|.|.+.|++|+|++|+++|++.++||.++.+......+.+.+.|+++ +. ++..++++|++++||.+|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~-~~-~~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD-SP-VPEEVLEELKALPGIIRVR 69 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC-CC-CCHHHHHHHHcCCCeEEEE
Confidence 67899999999999999999999999999886543246788888886 43 6889999999999999986
No 28
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.32 E-value=4.1e-07 Score=104.10 Aligned_cols=62 Identities=31% Similarity=0.559 Sum_probs=53.7
Q ss_pred cceEeecC---------CC----ceEecCCCCcHhHHHHhcccccccceE---EEEECCEecCCCccCCCCCeEEEEec
Q 002745 563 SRVFVFTP---------RG----EIKNLPKGATVVDYAYMIHTEIGNKMV---AAKVNGNLVSPTHVLANAEVVEIITY 625 (885)
Q Consensus 563 ~~V~VftP---------~G----~i~~lp~gsT~lDfAy~ih~~ig~~~~---~akvNG~~v~l~~~L~~gd~VeIit~ 625 (885)
+-|.|||- +| +.+.||+|+|+.||||.||++++++++ +++ +++.++++|+|++||+|+|+|+
T Consensus 318 ~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 318 DMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVST 395 (396)
T ss_pred CCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEeC
Confidence 46778882 22 399999999999999999999999975 455 7899999999999999999985
No 29
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.27 E-value=2.2e-06 Score=70.24 Aligned_cols=59 Identities=42% Similarity=0.567 Sum_probs=54.9
Q ss_pred EeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 566 ~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
.+..|+|+.+.+|.|+|+.|+|+.++...+...+++++||++++|.+++.+|+.||+++
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 35668899999999999999999999988889999999999999999999999999987
No 30
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=3.8e-06 Score=70.99 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=57.1
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
|.|++.|++|+|++|+++|++.++||.++......+.+.+.+.|.++ +. ++..++++|++++||.+|.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~-~~-~~~~~i~~l~~~~~v~~v~ 69 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD-QP-IDEEVIEEIKKIPNIHQVI 69 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC-CC-CCHHHHHHHHcCCCceEEE
Confidence 67899999999999999999999999999876422345666676666 44 8999999999999999985
No 31
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=98.22 E-value=5.8e-06 Score=73.40 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=64.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.|.+.|++|+|+.|+.+++..|.||.++++....+.+..+|+++++ |-..++.++++|.++.+|.+|+.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHHHHhcCcCeEEEEE
Confidence 489999999999999999999999999999987655567899999996 88999999999999999999874
No 32
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.19 E-value=6.8e-06 Score=69.00 Aligned_cols=65 Identities=28% Similarity=0.402 Sum_probs=51.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccC
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILG 863 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~g 863 (885)
.|.|.+.||||+|++|+++|++.++||.++...+..+. ...+.+.+..+..++..++++|++++|
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG-VGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST-TEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC-ceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 47889999999999999999999999999998876432 222333333688888899999988876
No 33
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.18 E-value=7.1e-06 Score=69.58 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=54.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec---CCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR---GRGIAVMLFHVE-GNLESLVNACSSVDLI 861 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~---~~~~a~m~f~IE-~d~e~L~rll~kI~~V 861 (885)
|.|++.|++|+|++|+++|++.++||.++.+.... ..+.+.+.|+++ .+.++|..++.+|++-
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999876432 246788999999 9999999999999874
No 34
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=98.13 E-value=1.8e-05 Score=64.95 Aligned_cols=70 Identities=31% Similarity=0.467 Sum_probs=61.7
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
|.|.+.|++|++++|++.+++.++||.++..... +.+.+.+.|+++ .+..++..++..|+.++||..|.|
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~r 71 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVRR 71 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEEC
Confidence 4678999999999999999999999999987643 336678889999 899999999999999999998875
No 35
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=1.5e-05 Score=67.71 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=59.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.|.+.|++|+|++|++.|++.++||.+++.... ..+.+.+.|.++ +.+++..++++|++++||+.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~-~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELE-GVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEe-ccccHHHHHHHHhCCCCeEEEEe
Confidence 47889999999999999999999999999987644 235667777666 44899999999999999999864
No 36
>PRK07334 threonine dehydratase; Provisional
Probab=98.11 E-value=1e-05 Score=93.02 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=63.2
Q ss_pred CceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeee---cCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002745 793 GHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEID---RGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 864 (885)
Q Consensus 793 ~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~---~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV 864 (885)
.++.+.|.|++.||+|+|+||+++|++.++||.++++.++ ...+.+.+.|+|+ +|.+||.++|++|+++.-.
T Consensus 323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~~L~~vi~~Lr~~g~~ 398 (403)
T PRK07334 323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAAHLQEVIAALRAAGFE 398 (403)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHHHHHHHHHHHHHcCCe
Confidence 3467899999999999999999999999999999998754 0257899999999 9999999999999997543
No 37
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=98.11 E-value=1.5e-05 Score=73.56 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=64.2
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
-.|.|.+.|++|+|+.|+.+++..|.||.++++-.....+..+|++.+. +-+.+++++++|.++.+|++|..
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi~kQL~KLidVikV~~ 80 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQMISQIEKLEDVLKVRR 80 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHHHHHHhCCcCEEEEEE
Confidence 3589999999999999999999999999999876555668899999888 55899999999999999999864
No 38
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.05 E-value=9.7e-06 Score=82.92 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=57.0
Q ss_pred hcCCCcccCC--cccchHHHHHHHHHHcCCCHHHHHHHhhccc---cccCCC-------------CCHHHHHHHhCHHHH
Q 002745 160 HDGQKRRSGE--PFIIHPVEVARILGELELDWESIAAGLLHDT---VEDTNV-------------VTFERIEEEFGATVR 221 (885)
Q Consensus 160 H~gQ~RksGe--PYi~Hpl~VA~iLa~l~~D~~tI~AALLHDv---vEDT~~-------------~t~e~I~~~FG~~Va 221 (885)
+.|+...+|+ ||+.|++++|.+..+-|.|.+.|+||||||+ ++|+.. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 3444455675 6899999999998899999999999999998 776431 125788999999999
Q ss_pred HHHhhhccc
Q 002745 222 RIVEGETKV 230 (885)
Q Consensus 222 ~LV~glTk~ 230 (885)
.+|..-...
T Consensus 93 ~lV~~Hv~a 101 (179)
T TIGR03276 93 EPIRLHVQA 101 (179)
T ss_pred HHHHHHHHH
Confidence 999986643
No 39
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=98.00 E-value=3.1e-05 Score=78.24 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.|.+.|++|+|++|+.+++..|+||.++.+....+.+...|.|+++.|-+.+++++++|.++.+|++|..
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEe
Confidence 488899999999999999999999999999876544467899999999889999999999999999999965
No 40
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.96 E-value=3.3e-05 Score=66.11 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=55.6
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeec
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGW 867 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V 867 (885)
|++|+|..|+.+++..|.||.++++....+.+.+.|+++++.+-+.+..++.+|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 789999999999999999999999987556788999999997678999999999999999986
No 41
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.93 E-value=5e-05 Score=76.47 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=64.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.|.+.|++|+|++|+.++++.|+||.++.+....+.+...|.|+++.|-+.++++.++|.++-+|+.|..
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEe
Confidence 488999999999999999999999999999876554467899999999788999999999999999999864
No 42
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.90 E-value=1.5e-05 Score=96.58 Aligned_cols=64 Identities=31% Similarity=0.452 Sum_probs=60.4
Q ss_pred ceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCC
Q 002745 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 627 (885)
Q Consensus 564 ~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~~~ 627 (885)
++.|..|+|.++++|+|+|+.|+|+.++++.++.+++|+|||++++|++++.+++.||++|..+
T Consensus 1 ~~~i~~~~g~~~~~~~gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~ 64 (638)
T PRK00413 1 MIKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKD 64 (638)
T ss_pred CcEEEeCCCCEEEeCCCCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccc
Confidence 3678889999999999999999999999999999999999999999999999999999999764
No 43
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.76 E-value=7.8e-05 Score=76.23 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=61.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.|.+.|+||+|+.||.+++..|+||.++++......+...|++.+.++-..++.+.++|.++-+|+.|..
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~ 75 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQD 75 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEe
Confidence 488999999999999999999999999999997644557788888888655558888889988888888754
No 44
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00024 Score=62.04 Aligned_cols=61 Identities=31% Similarity=0.376 Sum_probs=49.3
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c----CHHHHHHHHHHhc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSSVD 859 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~----d~e~L~rll~kI~ 859 (885)
|.|.+.||+|++++||+.|++.|+||..++..++...+...|.+.+. . +.++|...+..+.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999999999887654556677777777 3 4677776666654
No 45
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=97.53 E-value=0.00029 Score=60.46 Aligned_cols=68 Identities=24% Similarity=0.347 Sum_probs=54.8
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
+.|...|++|.|++|+++|++.++||.++........+.+.+.|.++.+. -..+++.|++++||..++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~--~~~~~~~l~~~~~v~~v~ 69 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV--PDEVLEELRALPGILSAK 69 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC--CHHHHHHHHcCCCccEEE
Confidence 45689999999999999999999999998765332346788888888322 248899999999998875
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.00035 Score=61.40 Aligned_cols=64 Identities=25% Similarity=0.278 Sum_probs=50.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--c--CHHHHHHHHHHhccccCe
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--G--NLESLVNACSSVDLILGV 864 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~--d~e~L~rll~kI~~V~gV 864 (885)
|.|.+.||||++++||++|++.++||.+++..+.. +.+.|.+.++ . +.++|..-+..+.+--||
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~--~~f~~~~~v~~p~~~~~~~l~~~l~~l~~~l~l 69 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIH--GRLSLGILVQIPDSADSEALLKDLLFKAHELGL 69 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEc--CeeEEEEEEEcCCCCCHHHHHHHHHHHHHHcCc
Confidence 67899999999999999999999999999766543 5677777777 3 467777777776654444
No 47
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.47 E-value=0.00039 Score=61.32 Aligned_cols=61 Identities=25% Similarity=0.252 Sum_probs=45.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec----CCcEEEEEEEEE-c---CHHHHHHHHHHhc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR----GRGIAVMLFHVE-G---NLESLVNACSSVD 859 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~----~~~~a~m~f~IE-~---d~e~L~rll~kI~ 859 (885)
|.|.+.|++|++++||++|++.++||.+++..+.. +.+.+.|.+++. . +.+.|..-+.++.
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~ 70 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELC 70 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 67999999999999999999999999999987654 225666666666 3 3444444444433
No 48
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.46 E-value=9.6e-05 Score=81.33 Aligned_cols=62 Identities=35% Similarity=0.493 Sum_probs=53.6
Q ss_pred cceEeec-CCC------ceEecCCCCcHhHHHHhcccccccceEEEEE-------CCEecCCCccCCCCCeEEEEe
Q 002745 563 SRVFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 563 ~~V~Vft-P~G------~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv-------NG~~v~l~~~L~~gd~VeIit 624 (885)
+-|.||| |.| +.+-|.+|+|+.|||-.||.++-....-|+| +|+.|.++|+|+++|+|+|+.
T Consensus 289 ~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 289 GLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred CeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEee
Confidence 4677888 445 6788899999999999999999988877766 788999999999999999974
No 49
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.39 E-value=0.00063 Score=60.30 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=47.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE---cCHHHHHHHHHHhccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLI 861 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE---~d~e~L~rll~kI~~V 861 (885)
-|.+.+.||+|+++.||+.|++.|+||..++..... +.+.|.+.++ .+.+.|..-+..+.+-
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~--~~F~m~~~~~~~~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAILG--TEFALTMLVEGSWDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEc--CEEEEEEEEEeccccHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999877543 4445554444 4566777666666543
No 50
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0011 Score=57.45 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=48.2
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeee---cCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEID---RGRGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~---~~~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
|.|...|+||.|++|+++|++.|+||.++..... .+.+...++++++ ...++..++++|++.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e-~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPM-DRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEe-cchHHHHHHHHHhCc
Confidence 6789999999999999999999999999976532 2223456666666 333588999998765
No 51
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.29 E-value=0.0008 Score=59.41 Aligned_cols=62 Identities=29% Similarity=0.282 Sum_probs=44.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
-|.|.+.||||++++|+.+|++.|+||..++..+.. +.+.+.+.|+.+.+.+.++.+.|+++
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~--~~f~~~~~v~~~~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLG--GRFTLIMLVSIPEDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEET--TEEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEc--CeEEEEEEEEeCcccHHHHHHHHHHH
Confidence 488999999999999999999999999999887653 45666677762244555665555544
No 52
>PTZ00258 GTP-binding protein; Provisional
Probab=97.25 E-value=0.00036 Score=79.87 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=55.3
Q ss_pred cceEeec--CC-CceEecCCCCcHhHHHHhcccccccceEEEEE----------------C-C--EecCCCccCCCCCeE
Q 002745 563 SRVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------------N-G--NLVSPTHVLANAEVV 620 (885)
Q Consensus 563 ~~V~Vft--P~-G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv----------------N-G--~~v~l~~~L~~gd~V 620 (885)
+-|.+|| |+ -+.+.+|+|+|+.|+|+.||||+++..+.|.| . | +.+.-+|.|++||+|
T Consensus 303 ~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi 382 (390)
T PTZ00258 303 NLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDII 382 (390)
T ss_pred CCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEE
Confidence 3666777 33 38999999999999999999999999999999 3 6 799999999999999
Q ss_pred EEEec
Q 002745 621 EIITY 625 (885)
Q Consensus 621 eIit~ 625 (885)
++..+
T Consensus 383 ~f~fn 387 (390)
T PTZ00258 383 FFKFN 387 (390)
T ss_pred EEEec
Confidence 99874
No 53
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.002 Score=56.23 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=50.4
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 860 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~------d~e~L~rll~kI~~ 860 (885)
..|.|.+.||+|+|++|+.+|+..++||.++.+.+. +++.+.-.|.|. . +.+.+.++...|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 368899999999999999999999999999998765 346777788886 2 34566667766654
No 54
>PRK00194 hypothetical protein; Validated
Probab=97.25 E-value=0.00034 Score=63.39 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=49.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC-HHHHHHHHHHhccccCeeec
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-LESLVNACSSVDLILGVLGW 867 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d-~e~L~rll~kI~~V~gV~~V 867 (885)
.|.|.+.||+|++++|+++|++.|+||..++..+. .+.+.+.+.++ .. ......+...|..+.+.+++
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~ 74 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTIM--DGYFTMIMLVDISESKKDFAELKEELEELGKELGV 74 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhh--CCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 58899999999999999999999999999987653 36777777777 33 22234444455545444443
No 55
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.20 E-value=0.0014 Score=53.95 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=43.3
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHH
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVN 853 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~r 853 (885)
|.|+..|++|.|++|+++|++.++||.++.+.... .+.+.+.|+++ +.+.-.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~-~~~~a~~ 53 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFS-DPERAKE 53 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEEC-CHHHHHH
Confidence 46789999999999999999999999999876543 46788999998 5444333
No 56
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.16 E-value=0.0012 Score=56.59 Aligned_cols=54 Identities=31% Similarity=0.498 Sum_probs=45.9
Q ss_pred CCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002745 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (885)
Q Consensus 570 P~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~----l~~~L~~gd~VeIit~ 625 (885)
=+|+.+++|+|.|..|+.-... +-...+++.+||..+| .+++|++||.|||++.
T Consensus 5 vNG~~~~~~~~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 5 LNGEPRELPDGESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred ECCeEEEcCCCCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 3789999999999999986653 3346667889999999 8999999999999984
No 57
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.0025 Score=56.04 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=50.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c-------CHHHHHHHHHHhcc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-------NLESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~-------d~e~L~rll~kI~~ 860 (885)
-|+|.+.||+|+|++|+.+|++.++||.+..+.+. ++.+...|.|. . +.+.+.++...|.+
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999999999998865 36788888886 3 34667777777765
No 58
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.0029 Score=54.00 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=48.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c-----CHHHHHHHHHHhcc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~-----d~e~L~rll~kI~~ 860 (885)
.|.|.+.||+|+|++|+++|++.++||.++.+.+.. +.+...|.+. . +.+.+.++..+|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLG--ERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC--CEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 588999999999999999999999999999987553 4677778776 2 34566667666654
No 59
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.08 E-value=0.0027 Score=54.20 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=43.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHH
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACS 856 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~ 856 (885)
+|.|...|++|.|++|+++|++.++||.++.+....+ .+.++|..+ |.+++.+++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~-~~~~~~~~L~ 58 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVS-DPDKAKEALK 58 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEEC-CHHHHHHHHH
Confidence 5889999999999999999999999999998754332 466666664 6666665554
No 60
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.06 E-value=0.0028 Score=56.18 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=51.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c-----CHHHHHHHHHHhccccC
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVDLILG 863 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~-----d~e~L~rll~kI~~V~g 863 (885)
-|+|.+.||+|+|++|+.+|++.|+||.++.+.+.. ++.+.=.|.|. . +.+...++...|.+.-|
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~-~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~ 72 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTP-DGRVLDLFFITDARELLHTKKRREETYDYLRAVLG 72 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECC-CCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 478999999999999999999999999999988643 36777788887 2 22566677777765443
No 61
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=97.05 E-value=0.0023 Score=61.91 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=61.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCH-HHHHHHHHHhccccCeeeccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-ESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~-e~L~rll~kI~~V~gV~~V~~ 869 (885)
...|.+...||.|+|+++-.+||+.++||..++-. ..-++.|.+++.+. ++. .....++.+|++++||..|..
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~-ipl~g~Anvtlsi~~ssm~~~V~~ii~kl~k~e~V~kVei 146 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQT-IPLQGRANVTLSIDTSSMEKDVDKIIEKLRKVEGVEKVEI 146 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecc-cccCceeeEEEEEEchhhhhhHHHHHHHHhcccceeEEEE
Confidence 45688899999999999999999999999999643 22357888888888 444 478999999999999999875
No 62
>PRK06437 hypothetical protein; Provisional
Probab=97.03 E-value=0.0022 Score=55.70 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=49.5
Q ss_pred ceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002745 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (885)
Q Consensus 564 ~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~ 625 (885)
+|.|-.++-+.+++|+|.|+.|+.-.++-. ..-+++.+||+.++.++.|++||.|||++.
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEec
Confidence 456665555889999999999998877654 244477799999999999999999999974
No 63
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.03 E-value=0.0014 Score=59.24 Aligned_cols=64 Identities=31% Similarity=0.392 Sum_probs=49.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC----HHHHHHHHHHhccccC
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN----LESLVNACSSVDLILG 863 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d----~e~L~rll~kI~~V~g 863 (885)
.|.+.+.||+|++++||+.|++.|+||..++..+. .+.+.|.+.++ .+ .+.|..-+.++.+--|
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~--~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~~~ 71 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIM--DGYFTMIMIVDISESNLDFAELQEELEELGKELG 71 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhh--CCccEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 47899999999999999999999999999987753 36677888887 43 5555555555554333
No 64
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=97.03 E-value=0.0015 Score=65.42 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=64.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccccccC
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTGCSW 873 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~g~~~ 873 (885)
.|+|.+.|++|+|.++|.+|++.|.||+-.+.-..++...+.+-|.|| +.+..+.++.+++...-|++|+.--|+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE-gi~d~e~l~~~lks~d~v~ev~i~~sl 78 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE-GIDDFEKLLERLKSFDYVIEVEIHRSL 78 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee-CCCCHHHHHHHhhccceEEEeeecchH
Confidence 488999999999999999999999999998876544445889999999 777778889999999999999876554
No 65
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.01 E-value=0.0042 Score=55.14 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=50.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec-CCcEEEEEEEEE-c-CHHHHHHHHHHhccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-G-NLESLVNACSSVDLI 861 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~f~IE-~-d~e~L~rll~kI~~V 861 (885)
.|.++..|++|.|++|.+++++.++||.++...... +.....+.++++ . +.+.+..+++.|++.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~ 69 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL 69 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 477788999999999999999999999999876542 233456666666 3 478889999998873
No 66
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.00 E-value=0.0038 Score=52.88 Aligned_cols=61 Identities=25% Similarity=0.337 Sum_probs=48.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC-----HHHHHHHHHHhcc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d-----~e~L~rll~kI~~ 860 (885)
.|.|.+.|++|+|++|+.+|++.++||.++.+.+.. + .....|.+. .+ .++..++-.+|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-E-RALDVFYVTDSDGRPLDPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-C-EEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 578999999999999999999999999999887553 3 677788887 32 2566777666654
No 67
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0023 Score=55.21 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=52.3
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL 860 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~ 860 (885)
+.|+.-||||-|+++.++|+. +.||..++-... +.+.+.+.+.+| .+.+|+..++.+|++
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQ-GGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcC-CCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 467889999999999999999 999999976532 346788999999 999999999999987
No 68
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.005 Score=52.86 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=47.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~ 860 (885)
.|.|...|++|.|++|+++|++.++||.++........+...+.|.++ .+.+ ++++.|+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~---~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPR---PIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHH---HHHHHHHH
Confidence 578899999999999999999999999999765433456788889998 6665 45555543
No 69
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=96.96 E-value=0.0019 Score=55.37 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=45.3
Q ss_pred CCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~----~~L~~gd~VeIit~ 625 (885)
+|+.+++|.+.|+.|+.-.+.- -...++..|||+.++.+ ++|++||.|+|++.
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEEGATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 6899999999999999766643 23456778999999999 89999999999984
No 70
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.92 E-value=0.0038 Score=52.23 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=43.9
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhcc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDL 860 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~ 860 (885)
|.|...|++|.|++|+++|+++++||.++........+...+.|.++ + +.++++.|++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve-~---~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE-D---IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC-C---HHHHHHHHHH
Confidence 67889999999999999999999999998764333235677777777 4 4455555543
No 71
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.90 E-value=0.0047 Score=54.91 Aligned_cols=61 Identities=18% Similarity=0.365 Sum_probs=48.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEe--eecCCcEEEEEEEEE--c----CHHHHHHHHHHhcc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAE--IDRGRGIAVMLFHVE--G----NLESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~--~~~~~~~a~m~f~IE--~----d~e~L~rll~kI~~ 860 (885)
-|+|.+.||+|+|++|+.++++.|++|.+..+. +. +..+.=.|-|. + |.+++..+..+|..
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~--Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVK--GYREVDLFIVQSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcc--cCEEEEEEEEeCCCCccCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999988 54 24455566664 2 56777888777753
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.87 E-value=0.0054 Score=52.44 Aligned_cols=62 Identities=19% Similarity=0.116 Sum_probs=47.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhcc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~ 860 (885)
++.|.+.|++|.|++|++.|++.++||.++.+..........+.|.++ +.++.+++.+.|++
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~-~~~~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK-TQEDRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC-CHHHHHHHHHHHHH
Confidence 578899999999999999999999999999765432112455566676 33477777777765
No 73
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=96.81 E-value=0.002 Score=78.44 Aligned_cols=66 Identities=32% Similarity=0.388 Sum_probs=61.4
Q ss_pred CcceEeecCCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCC
Q 002745 562 GSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 627 (885)
Q Consensus 562 ~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~~~ 627 (885)
.+++.|..|+|..+++|+|.|+.|+|..+........++|+|||++++|++++..+..|+++|..+
T Consensus 3 ~~mi~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~ 68 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDS 68 (639)
T ss_pred CCCeEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCC
Confidence 456889999999999999999999999999988999999999999999999999999999999754
No 74
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.78 E-value=0.0093 Score=52.64 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=47.9
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c------CHHHHHHHHHHhc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVD 859 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~------d~e~L~rll~kI~ 859 (885)
+-|+|.+.||+|+|.+|+++|++.|++|.+..+.+. + ..+.=.|-|. . |.+.+..|-.+|.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~-G-erv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSD-G-GWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeec-C-CeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999999999999998865 3 4566677776 3 3455666655553
No 75
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.77 E-value=0.0072 Score=46.71 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=46.6
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVD 859 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~ 859 (885)
|.|.+.|++|++++|+++|++.+++|..+............+.|.++ +..++.+++.+|+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 60 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD-GDGDLEKLLEALE 60 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe-chHHHHHHHHHhC
Confidence 46788999999999999999999999999876432234566777777 3338888888763
No 76
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.76 E-value=0.0084 Score=53.34 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=49.1
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 860 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~------d~e~L~rll~kI~~ 860 (885)
+-|+|.+.||||||.+|+.+|++.+.+|.+..+.+. + ..+.=.|-|. . |.+++.++-.+|..
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~-g-era~D~FyV~d~~g~kl~~~~~~~~l~~~L~~ 70 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTD-G-DDAHQEYYIRHKDGRTLSTEGERQRVIKCLEA 70 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeec-C-ceEEEEEEEEcCCCCccCCHHHHHHHHHHHHH
Confidence 358999999999999999999999999999998864 3 4566677775 2 56667777666653
No 77
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.75 E-value=0.0076 Score=52.67 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=50.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEEc--CHHHHHHHHHHhccc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEG--NLESLVNACSSVDLI 861 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE~--d~e~L~rll~kI~~V 861 (885)
+.++..|++|.|++|.+++++.|+||.++.+....+ .+.+.+-++++. +...+..++..|++.
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 456678999999999999999999999998775433 345666666663 678899999999874
No 78
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.73 E-value=0.0058 Score=67.48 Aligned_cols=68 Identities=24% Similarity=0.234 Sum_probs=54.6
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--cC--HHHHHHHHHHhccccC
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GN--LESLVNACSSVDLILG 863 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~d--~e~L~rll~kI~~V~g 863 (885)
...|.|.+.||+|++++||++|++.++||..+++.++...+.+.|.++++ .+ .++|..-+.++-.--|
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARFG 78 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 44689999999999999999999999999999987655667888988886 33 6777666666654433
No 79
>PRK07440 hypothetical protein; Provisional
Probab=96.73 E-value=0.0043 Score=54.34 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=46.0
Q ss_pred CCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002745 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (885)
Q Consensus 570 P~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~----l~~~L~~gd~VeIit~ 625 (885)
=+|+.+++|.|.|..|+--.+.- -...+++.+||+.+| .++.|++||.|||++.
T Consensus 9 vNG~~~~~~~~~tl~~lL~~l~~--~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 9 VNGETRTCSSGTSLPDLLQQLGF--NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ECCEEEEcCCCCCHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 36899999999999998755432 346789999999999 8899999999999985
No 80
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.73 E-value=0.0083 Score=52.39 Aligned_cols=47 Identities=28% Similarity=0.429 Sum_probs=40.4
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
++|.|.+.||+|+|++|+.+|++.++||.++.+.+. + +.+...|.|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~-~-~~~~d~f~v~ 48 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ-G-DMAVNVFYVT 48 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC-C-CeEEEEEEEE
Confidence 368899999999999999999999999999987644 3 4777888886
No 81
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.69 E-value=0.0045 Score=52.80 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=43.1
Q ss_pred CCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l----~~~L~~gd~VeIit~ 625 (885)
+|+.+++|.|+|+.|+.-.+... .-++.-+||+.++. ++.|++||.|||++.
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 78999999999999987655433 33578899999986 568999999999984
No 82
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.68 E-value=0.006 Score=63.52 Aligned_cols=64 Identities=11% Similarity=0.166 Sum_probs=51.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec----CCcEEEEEEEEE--cC--HHHHHHHHHHhc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR----GRGIAVMLFHVE--GN--LESLVNACSSVD 859 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~----~~~~a~m~f~IE--~d--~e~L~rll~kI~ 859 (885)
+..+.|.+.||||++++||++|++.++||.++++.+.. +...+.|.++++ .+ .++|..-+..+.
T Consensus 95 ~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l~ 166 (190)
T PRK11589 95 TVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKALC 166 (190)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998653 234688888888 55 666666555554
No 83
>PRK01777 hypothetical protein; Validated
Probab=96.61 E-value=0.0035 Score=58.16 Aligned_cols=54 Identities=22% Similarity=0.137 Sum_probs=42.0
Q ss_pred ceEecCCCCcHhHHHHhccc-----ccccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002745 573 EIKNLPKGATVVDYAYMIHT-----EIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~-----~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~~ 626 (885)
..+++|.|+|+.|..-+..- ++.-.....-|||+.+.++++|++||.|||+-.-
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCC
Confidence 46789999999999776642 3322223556899999999999999999998654
No 84
>PLN02908 threonyl-tRNA synthetase
Probab=96.54 E-value=0.0039 Score=76.64 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=60.5
Q ss_pred cceEeecCCCceEecCC-CCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCC
Q 002745 563 SRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNA 627 (885)
Q Consensus 563 ~~V~VftP~G~i~~lp~-gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~~~ 627 (885)
++|.|..|+|.+++.|+ |+||.|+|-.|...+....++|+|||++++|+++|+.+..|++++..+
T Consensus 50 ~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~~ 115 (686)
T PLN02908 50 DPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGVLWDMTRPLEGDCKLKLFKFDD 115 (686)
T ss_pred CceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCEEeecCccccCCCeeEEecccc
Confidence 46889999999999995 599999999999999999999999999999999999999999999764
No 85
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.54 E-value=0.0074 Score=51.64 Aligned_cols=53 Identities=26% Similarity=0.462 Sum_probs=44.3
Q ss_pred CCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~----~~L~~gd~VeIit~ 625 (885)
+|+.+++|.|.|..|+.-.+.-. ...++..+||+.++-+ +.|++||.|||++.
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 68999999999999998776544 3667888999999743 57999999999984
No 86
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.49 E-value=0.0066 Score=52.65 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=45.1
Q ss_pred CCceEecCCC-CcHhHHHHhcccccccceEEEEECCEecCCC----ccCCCCCeEEEEec
Q 002745 571 RGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (885)
Q Consensus 571 ~G~i~~lp~g-sT~lDfAy~ih~~ig~~~~~akvNG~~v~l~----~~L~~gd~VeIit~ 625 (885)
+|+.+++|.+ +|..|+.-.+.- -...+++-+||+.+|-+ +.|++||.|||++.
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 6889999999 799998765543 34577889999999999 88999999999985
No 87
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.43 E-value=0.0081 Score=52.47 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=43.1
Q ss_pred eEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002745 574 IKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (885)
Q Consensus 574 i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~ 625 (885)
.+++|.|.|+.|+.-.+.- -...+...+||+.++.++.|++||.|+|++.
T Consensus 17 ~~~~~~~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEcCCCCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 7788999999999877743 3366888899999999999999999999974
No 88
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.40 E-value=0.019 Score=50.13 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=44.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHH
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLES 850 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~ 850 (885)
.|.|.+.||+|++++|+.+|+..+.||.+.++.+. .++.+.-.|.|. .+.++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d~~~~~ 55 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTGWKRGE 55 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEecCCccc
Confidence 47888999999999999999999999999998866 457788888888 44443
No 89
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.33 E-value=0.012 Score=50.79 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002745 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (885)
Q Consensus 570 P~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~----l~~~L~~gd~VeIit~ 625 (885)
=+|+.+++|.+.|..|+--.+.. -...+++-+||+.|| -++.|++||.|||++.
T Consensus 5 vNg~~~~~~~~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 5 FNDQPMQCAAGQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 37899999999999998765433 235688899999999 5557999999999985
No 90
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.21 E-value=0.015 Score=64.17 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=51.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c----CHHHHHHHHHH-hccccC
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G----NLESLVNACSS-VDLILG 863 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~----d~e~L~rll~k-I~~V~g 863 (885)
|.|.|.||+|++|.||+.|++.|+||..++...+...+.+.|++.++ . +.++|...++. +.+--|
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~~~~~~~~ 73 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKSALAEKFE 73 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999877654457788888887 3 35666666666 544434
No 91
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.20 E-value=0.013 Score=51.18 Aligned_cols=52 Identities=25% Similarity=0.428 Sum_probs=44.9
Q ss_pred CceEecCCCCcHhHHHHhcccccccceEEEEECCEecC----CCccCCCCCeEEEEec
Q 002745 572 GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (885)
Q Consensus 572 G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~----l~~~L~~gd~VeIit~ 625 (885)
|+..+++.+.|..|+--.+.. -..-+++.+||..|| .++.|++||.|||++.
T Consensus 9 g~~~e~~~~~tv~dLL~~l~~--~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 9 GKEVEIAEGTTVADLLAQLGL--NPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred CEEEEcCCCCcHHHHHHHhCC--CCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 899999999999998655433 336788999999999 9999999999999984
No 92
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=96.08 E-value=0.014 Score=59.01 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=57.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcC---HHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGN---LESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d---~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.+...|.+|.|..|+..++..|.||.++..-..+..+..+|++.+..| .+|+.+-+.+|-.+.+|.+...
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~ 80 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTS 80 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEcCC
Confidence 47888999999999999999999999999987655455688888888866 6666666666666666666554
No 93
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.04 E-value=0.0047 Score=56.38 Aligned_cols=48 Identities=31% Similarity=0.415 Sum_probs=39.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
.+-|.|.+.||+|+.|.|+++||+.++||.+++=..-+ +...|-+-++
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~--~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMD--GFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHh--hhceeeeEEc
Confidence 34689999999999999999999999999999633222 5677777777
No 94
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.95 E-value=0.015 Score=64.19 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=48.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-----cCHHHHHHHHHHhccccC
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-----GNLESLVNACSSVDLILG 863 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-----~d~e~L~rll~kI~~V~g 863 (885)
..|.|.+.||+|++++||++|++.|+||..+++......+.+.|.+.++ .+.+.|...+.+|.+=-|
T Consensus 7 ~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~ 78 (286)
T PRK06027 7 YVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFE 78 (286)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999887632334666666665 234555555555553333
No 95
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=95.92 E-value=0.029 Score=64.16 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=57.4
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEe---eecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAE---IDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 795 ~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~---~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
....|.|+.-||||.|++|++.|++.++||.++... .+...+.+.+.|.|| .+.+++..++.+|++..
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~~~G 375 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILRDMG 375 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 356799999999999999999999999999999654 111246788999999 88999999999998753
No 96
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.80 E-value=0.024 Score=48.57 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=41.9
Q ss_pred CCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCC----CccCCCCCeEEEEec
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l----~~~L~~gd~VeIit~ 625 (885)
+|+.+++ .+.|+.|+--.+. +....+++-+||+.+|. +++|++||.|||++.
T Consensus 6 Ng~~~~~-~~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQT-EATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEc-CcCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 6788999 4579999865553 23356788999999998 789999999999984
No 97
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.78 E-value=0.013 Score=66.60 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=48.9
Q ss_pred ceEeecCCC---ceEecCCCCcHhHHHHhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEE
Q 002745 564 RVFVFTPRG---EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVE 621 (885)
Q Consensus 564 ~V~VftP~G---~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv-----------------NG~--~v~l~~~L~~gd~Ve 621 (885)
-|.+||-.. +.+.+|+|+|+.|+|+.||||+++..+.|.| .|+ +..-+|.+++||+|.
T Consensus 280 li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~ 359 (364)
T PRK09601 280 LITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMH 359 (364)
T ss_pred CEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEE
Confidence 566666322 6899999999999999999999999998874 132 335689999999999
Q ss_pred EEe
Q 002745 622 IIT 624 (885)
Q Consensus 622 Iit 624 (885)
|-.
T Consensus 360 f~f 362 (364)
T PRK09601 360 FRF 362 (364)
T ss_pred EEc
Confidence 865
No 98
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.66 E-value=0.044 Score=49.47 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=49.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC-HHHHHHHHHHhccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-LESLVNACSSVDLI 861 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d-~e~L~rll~kI~~V 861 (885)
-|.|+.-||||-|++++++|+ +.||..+.-... ..+.+.+.+.+| .| .+++..++..|++-
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~-~~~~~~v~i~ie~~~~~~~~~~i~~~L~~~ 65 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYA-DEKDAHIFVGVSVANGAEELAELLEDLKSA 65 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEcc-CCCeeEEEEEEEeCCcHHHHHHHHHHHHHC
Confidence 378889999999999999999 678877665432 225677888889 88 99999999999873
No 99
>PRK08198 threonine dehydratase; Provisional
Probab=95.64 E-value=0.044 Score=63.17 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=58.0
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeee---cCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEID---RGRGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~---~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
...|.|+..|+||.|+++.++|++.++||..++.... ...+.+.+.++|| .+.++++.++.+|++..
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~~~~~l~~~L~~~G 397 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPEHIEEILDALRDAG 397 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 5679999999999999999999999999999986532 1246799999999 99999999999998743
No 100
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.62 E-value=0.058 Score=49.65 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=54.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-GNLESLVNACSSVDLILGV 864 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV 864 (885)
.+.|.+...|++|.|.+|.+++++.|+||+.+.....+. ...+.+-++++ .+.+.+..+++.|++.-||
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~~~~~ 84 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRNDIGA 84 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 355777789999999999999999999999999876432 23467777777 4457888888888875544
No 101
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.57 E-value=0.024 Score=65.65 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=55.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
+|.|.-.|++|+++.|+++|++.++||.++..... .+.+.|.|.++... -..++++|++++||+.|..
T Consensus 340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~~--~~~~~~~i~~i~~v~~v~~ 407 (409)
T PRK11790 340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDADY--AEEALDALKAIPGTIRARL 407 (409)
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCCC--cHHHHHHHHcCCCeEEEEE
Confidence 58888999999999999999999999998877532 37888888888322 2378889999999998863
No 102
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.54 E-value=0.062 Score=47.26 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
.|.+...|++|.|++|.+++++.|+|++.+.....++ ...+.+-++++...+.+..++..|++.
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHHh
Confidence 3566778999999999999999999999999876532 234566666665556788888888764
No 103
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.51 E-value=0.038 Score=61.22 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=50.9
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE------cCHHHHHHHHHHhccccCe
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE------GNLESLVNACSSVDLILGV 864 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE------~d~e~L~rll~kI~~V~gV 864 (885)
.-|+|.+.||+|++|.||+.|++.|+||..++..++...+.+.|.+.++ -+.++|...++.+.+--|+
T Consensus 10 ~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 10 YVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3589999999999999999999999999999875332334455554444 2567788777777666554
No 104
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.42 E-value=0.023 Score=59.16 Aligned_cols=68 Identities=13% Similarity=0.167 Sum_probs=49.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE---cCHHHHHHHHHHhccccCee
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE---~d~e~L~rll~kI~~V~gV~ 865 (885)
..-|.|.+.||+|+++.||.+|++.|+||...++..- .+.+.|.+.|+ ...+.|...+..+.+..|+.
T Consensus 8 ~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~l--gg~Fa~i~lvs~~~~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 8 YLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML--GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLL 78 (190)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhh--CCceEEEEEEeCChhHHHHHHHHHHhhhhhcCeE
Confidence 3458999999999999999999999999999987643 24566666667 34455555555555443543
No 105
>PRK06382 threonine dehydratase; Provisional
Probab=95.41 E-value=0.055 Score=62.62 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=56.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEee---ecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEI---DRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~---~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
...|.|...|++|.|++|+++|++.++||.++.... ....+...+.|+|| .+.++...|+++|++-.
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~G 400 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMG 400 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 567999999999999999999999999999987631 12346788999999 88899999999997654
No 106
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.34 E-value=0.032 Score=66.57 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=58.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccccccCC
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSWP 874 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~g~~~~ 874 (885)
+|.|.|.||-||..||..+++..++||.++.+... +. |-+... -+.+.+..+|..|+.|+||.+|+.=-..|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 74 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI---GR--IYLNFAELEFESFSSLMAEIRRIAGVTDVRTVPFMP 74 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC---Ce--EEEeCCCcChhhHHHHHHHHhcCCCccchhhhccCh
Confidence 58999999999999999999999999999988521 33 344444 56778899999999999999998644433
No 107
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.33 E-value=0.029 Score=50.17 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=43.1
Q ss_pred CCceEecCCCCcHhHHHHhc---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 571 RGEIKNLPKGATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~i---h~~ig~--~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
++..+++|.|+|+.|+.-.+ |+.+.. ..+..-|||+.++.+++|++||.|+|+.
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~P 77 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIP 77 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 34688899999998886555 554444 3456779999999999999999999986
No 108
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.33 E-value=0.028 Score=63.12 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=59.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccccccCCC
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSWPS 875 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~g~~~~~ 875 (885)
+|.|.|.||-|+.+++-..+...+||+..+.+.. . ..+-+..- -+.++++.+|++|+.|+||.+|++=--.|+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~--~---~~IYln~p~l~~~~fs~L~aei~~I~GV~~vr~V~~mPs 75 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--I---GRIYLNFPELEFESFSSLMAEIRRIPGVTDVRTVPWMPS 75 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC--C---CeEEEeccccCHHHHHHHHHHHhcCCCccceeeecCCcc
Confidence 5899999999999999999999999999998842 1 22333333 578899999999999999999988654453
No 109
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.32 E-value=0.089 Score=46.62 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=50.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
|.+...|++|.|++|-+.+++.++||..+.....+. ...+.+-++++.+.+.+..++..|++.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~~ 66 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKRE 66 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHHh
Confidence 556678999999999999999999999999886532 234666667776667889999988774
No 110
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=94.71 E-value=0.067 Score=48.65 Aligned_cols=54 Identities=7% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCc----cCCCCCeEEEEec
Q 002745 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTH----VLANAEVVEIITY 625 (885)
Q Consensus 570 P~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~----~L~~gd~VeIit~ 625 (885)
=+|+.++++.+.|..|+--.+ ++-...+++-+||..||-+. .|++||.|||++.
T Consensus 23 VNG~~~~~~~~~tl~~LL~~l--~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 23 INDQSIQVDISSSLAQIIAQL--SLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred ECCeEEEcCCCCcHHHHHHHc--CCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 478999999999999987654 34556778899999999754 6999999999985
No 111
>PRK08526 threonine dehydratase; Provisional
Probab=94.65 E-value=0.11 Score=60.23 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=56.8
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec---CCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR---GRGIAVMLFHVE-GNLESLVNACSSVDLI 861 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~---~~~~a~m~f~IE-~d~e~L~rll~kI~~V 861 (885)
...|.|+.-||||.|++++++|++.+.||..+.-.... ..+.+.+.+.|| .+.+|+..+++.|++-
T Consensus 326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 56799999999999999999999999999999764321 225688999999 9999999999999764
No 112
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=94.59 E-value=0.025 Score=51.41 Aligned_cols=56 Identities=29% Similarity=0.297 Sum_probs=31.7
Q ss_pred cCCC---ceEecCCCCcHhHHHH-----hccccc--ccceEEEEECCEecCCCccCCCCCeEEEEecC
Q 002745 569 TPRG---EIKNLPKGATVVDYAY-----MIHTEI--GNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (885)
Q Consensus 569 tP~G---~i~~lp~gsT~lDfAy-----~ih~~i--g~~~~~akvNG~~v~l~~~L~~gd~VeIit~~ 626 (885)
+|+. .-++||.|+|+.|.-- .-++++ ....+|. =|+.++++++|++||.|||.-.-
T Consensus 9 ~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGI--fGk~~~~d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 9 LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGI--FGKLVKLDTVLRDGDRVEIYRPL 74 (84)
T ss_dssp ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEE--EE-S--TT-B--TT-EEEEE-S-
T ss_pred CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeee--eeeEcCCCCcCCCCCEEEEeccC
Confidence 4554 3578999999999643 345565 4444554 59999999999999999997643
No 113
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.55 E-value=0.2 Score=48.13 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=57.7
Q ss_pred cccCCCCCc--eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec-CCcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002745 786 ATWHNLEGH--SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVEGNLESLVNACSSVDLIL 862 (885)
Q Consensus 786 v~W~~~~~~--~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~f~IE~d~e~L~rll~kI~~V~ 862 (885)
+.|...... ..+.|.+...|++|.|++|.+.++..|+||+.+.....+ ....+.+-+.++.+.+++..++..|++.-
T Consensus 29 ~~~~~~~~~~~~ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~~~ 108 (115)
T cd04930 29 VFEEKEGKAVPQKATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQVA 108 (115)
T ss_pred cccccccccccccEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHHhc
Confidence 356543332 135688888999999999999999999999999987643 23457777788855567888888888743
No 114
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=94.46 E-value=0.081 Score=47.80 Aligned_cols=48 Identities=31% Similarity=0.344 Sum_probs=42.1
Q ss_pred eEecCCCCcHhHHHHhc---ccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002745 574 IKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (885)
Q Consensus 574 i~~lp~gsT~lDfAy~i---h~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~ 625 (885)
...++.++|+.|..-++ |+++|- ..|||+.+++++.+++||.|.|...
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~----i~vNG~~v~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGL----ILVNGRPVDFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEE----EEECCEECCCcccCCCCCEEEEEec
Confidence 46889999999998776 888874 5699999999999999999999764
No 115
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=94.42 E-value=0.082 Score=45.51 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCc---cCCCCCeEEEEec
Q 002745 570 PRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTH---VLANAEVVEIITY 625 (885)
Q Consensus 570 P~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~---~L~~gd~VeIit~ 625 (885)
=+|+.+++|++.|..|+.-.+.- -...++.-+||..+|-.. .|++||.|||++.
T Consensus 5 vNG~~~~~~~~~tl~~ll~~l~~--~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 5 VNEEQVEVDEQTTVAALLDSLGF--PEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred ECCEEEEcCCCCcHHHHHHHcCC--CCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 37899999999999999766533 345778889999777543 5999999999985
No 116
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.36 E-value=0.056 Score=64.65 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=56.4
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
|-+.-.|+||+++.|+++|++.++||.+++......++.+.|.+.+..... ..++.+|+++++|.+|+
T Consensus 454 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~--~~~l~~i~~~~~i~~v~ 521 (525)
T TIGR01327 454 LIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVP--DEVLEEIKAIPDILSVF 521 (525)
T ss_pred EEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCC--HHHHHHHhcCCCccEEE
Confidence 566779999999999999999999999998764444578999999984433 67889999999998875
No 117
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.31 E-value=0.12 Score=65.27 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=58.8
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c---CHHHHHHHHHHhccc
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G---NLESLVNACSSVDLI 861 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~---d~e~L~rll~kI~~V 861 (885)
|.+.+......+.|.|.+.||+|||++|+.+|+..++||.+..+.|. ++.+.=.|.|. . +.+++.++..+|.+.
T Consensus 776 V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~--~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~ 853 (856)
T PRK03059 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL--GERVEDTFLIDGSGLSDNRLQIQLETELLDA 853 (856)
T ss_pred EEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec--CCEEEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 45654444446789999999999999999999999999999998865 36677788885 2 457788888887654
Q ss_pred c
Q 002745 862 L 862 (885)
Q Consensus 862 ~ 862 (885)
-
T Consensus 854 L 854 (856)
T PRK03059 854 L 854 (856)
T ss_pred h
Confidence 3
No 118
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.25 E-value=0.069 Score=63.89 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=56.3
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
|-+.-.|+||+++.|+++|++.++||.++++....+++.+.|.|.+..... ..++.+|+++++|.+|.
T Consensus 455 li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~--~~~l~~i~~~~~i~~~~ 522 (526)
T PRK13581 455 LIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVP--EEVLEELRALPGILSAK 522 (526)
T ss_pred EEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCC--HHHHHHHhcCCCcceEE
Confidence 566779999999999999999999999998764445578899888884443 67889999999998875
No 119
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=94.25 E-value=0.054 Score=55.08 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=34.6
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeee
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEID 832 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~ 832 (885)
+.++.|++.||+|++.++|+.+...++||.++.+++.
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~ 128 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTY 128 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeee
Confidence 5789999999999999999999999999999988765
No 120
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.20 E-value=0.12 Score=65.95 Aligned_cols=74 Identities=23% Similarity=0.184 Sum_probs=55.8
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-------cCHHHHHHHHHHh
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-------GNLESLVNACSSV 858 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-------~d~e~L~rll~kI 858 (885)
|.+++..+...+.|.|.+.||+|+|++|+.+|++.|+||.++.+.+. ++.+.-.|.|. .+.+.+..|..+|
T Consensus 833 V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~--~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 833 VTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATY--GERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred EEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEc--CCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 45654444445789999999999999999999999999999999865 35677677775 1344566666666
Q ss_pred ccc
Q 002745 859 DLI 861 (885)
Q Consensus 859 ~~V 861 (885)
..+
T Consensus 911 ~~~ 913 (931)
T PRK05092 911 LAA 913 (931)
T ss_pred HHH
Confidence 543
No 121
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.20 E-value=0.15 Score=64.63 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=49.1
Q ss_pred ccccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 785 IATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 785 ~v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
.|.|++..+...+-|+|.+.||+|||++|+.+|++.+++|.+..+.|. + ..+.=.|-|.
T Consensus 797 ~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~-g-era~DvFyV~ 855 (884)
T PRK05007 797 EVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTI-G-ERVEDLFILA 855 (884)
T ss_pred EEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEecc-C-ceEEEEEEEE
Confidence 367876655557789999999999999999999999999999999875 2 4566677776
No 122
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.17 E-value=0.087 Score=46.38 Aligned_cols=53 Identities=30% Similarity=0.283 Sum_probs=42.6
Q ss_pred ceEecCCCCcHhHHHHhcccc------cccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002745 573 EIKNLPKGATVVDYAYMIHTE------IGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~------ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~ 625 (885)
..+++|.|+|+.|+--.+-.. .....+.+-|||+.++.+++|++||.|.|++.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 466889999999987655432 22456788899999999999999999999873
No 123
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.12 E-value=0.15 Score=59.39 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=58.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeec
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGW 867 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V 867 (885)
.|++.+.|++|+|++|+.++++.++||.++.-... ..+.+.+.+.++ .+..++..++.+|++++.|.+.
T Consensus 350 ylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~~ 419 (426)
T PRK06349 350 YLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLGI 419 (426)
T ss_pred EEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCcccccc
Confidence 58888999999999999999999999999865432 235677778878 7889999999999999998764
No 124
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.02 E-value=0.1 Score=65.31 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=48.9
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
+.|.+..+...+.|.|.+.||+|+|++|+.+|++.++||.++.+.|. ++.+.-.|.|.
T Consensus 697 v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~--g~~a~D~F~V~ 754 (774)
T PRK03381 697 VLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL--GADVVDVFYVT 754 (774)
T ss_pred EEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec--CCeEEEEEEEE
Confidence 46665544445679999999999999999999999999999999865 46788889998
No 125
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=93.88 E-value=0.081 Score=56.59 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=58.9
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.|.+-+.|.+|+|..|+.++|..|.||.++.+--.+....++|++.+.+.-.=|+++..+|..+-+|+.|-
T Consensus 79 vinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aVl 149 (309)
T KOG2663|consen 79 VINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAVL 149 (309)
T ss_pred eEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhheee
Confidence 58888999999999999999999999999987655555788899999855566777888888777777664
No 126
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.82 E-value=0.092 Score=47.52 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=48.3
Q ss_pred EEEEEec-cccHHHHHHHHHHhCCcceeeeEEeeec-------CCcEEEEEEEEE---cCHHHHHHHHHHhccccCe
Q 002745 799 FSVVCID-RRGIMADVTTALATVGVTICSCVAEIDR-------GRGIAVMLFHVE---GNLESLVNACSSVDLILGV 864 (885)
Q Consensus 799 I~V~a~D-R~GlLadItsvIa~~~iNI~sv~~~~~~-------~~~~a~m~f~IE---~d~e~L~rll~kI~~V~gV 864 (885)
+.|.+.| +.|+++.||++||+.|+||..++..+.+ ....+.|.|.|+ .|.+.|..-+..+.+=-||
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~~~~~~lr~~L~~la~elgv 78 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASELNV 78 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCCCCHHHHHHHHHHHhcccCc
Confidence 5678889 9999999999999999999888654221 113578888888 3556666666666555443
No 127
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=93.80 E-value=0.17 Score=63.98 Aligned_cols=72 Identities=22% Similarity=0.176 Sum_probs=52.8
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c-----CHHHHHHHHHHhc
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G-----NLESLVNACSSVD 859 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~-----d~e~L~rll~kI~ 859 (885)
|.+++..+...+.|.|.+.||||+|++|++++++.|+||.++.+.|.. +.+.-.|.|. . +-++...|-.+|.
T Consensus 769 V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~--~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 769 VTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFG--EKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred EEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecC--ccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 677665555567899999999999999999999999999999998753 3444455554 1 1245555555553
No 128
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.74 E-value=0.16 Score=53.55 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=42.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
.|-+.-.|+||+++.|+++|+++++||..+++......+.|.|-+.++
T Consensus 150 ~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 150 AILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred EEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 367788999999999999999999999999887554567899999998
No 129
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.56 E-value=0.22 Score=63.22 Aligned_cols=64 Identities=8% Similarity=0.135 Sum_probs=51.5
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c------CHHHHHHHHHHhcc
Q 002745 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVDL 860 (885)
Q Consensus 795 ~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~------d~e~L~rll~kI~~ 860 (885)
..+.|.|.+.||+|||++|+.+|++.|+||.+..+.|. ++.+.=.|.|. . +.+.+.++..+|.+
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~--g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~ 883 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATL--GERVEDVFFITDADNQPLSDPQLCSRLQDAICE 883 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEec--CCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999866 46777788886 2 23466666666654
No 130
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=93.15 E-value=0.092 Score=47.65 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=40.5
Q ss_pred ceEecCCCCcHhHHHHhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEEe
Q 002745 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv-----------------NG~--~v~l~~~L~~gd~VeIit 624 (885)
+.+.+++|+|+.+.|-.||+|+-+..+.|.| .|+ ...-+|.+++||+|.+..
T Consensus 13 RaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~f 83 (84)
T PF06071_consen 13 RAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFRF 83 (84)
T ss_dssp EEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEEE
T ss_pred EEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEEc
Confidence 5789999999999999999999999999998 454 566788999999999864
No 131
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.13 E-value=0.19 Score=56.27 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=46.1
Q ss_pred CCceEecCCCCcHhHHHHhcccccccceEEEEECCEecC----CCccCCCCCeEEEEecCC
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITYNA 627 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~----l~~~L~~gd~VeIit~~~ 627 (885)
+|+.++++.|.|..|+.-.+.- -..-++..|||+.|+ .+++|++||.|||++.-.
T Consensus 6 NGk~~el~e~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~Vg 64 (326)
T PRK11840 6 NGEPRQVPAGLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIVHFVG 64 (326)
T ss_pred CCEEEecCCCCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEEEEec
Confidence 6899999999999999766543 345677789999999 777999999999999743
No 132
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.08 E-value=0.27 Score=61.55 Aligned_cols=72 Identities=19% Similarity=0.209 Sum_probs=54.0
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c--CHHHHHHHHHHhcc
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G--NLESLVNACSSVDL 860 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~--d~e~L~rll~kI~~ 860 (885)
+.|.... ...+.|.|.+.||+|++++|+.+|+..|.||.+.++.+ .++.+...|.|. . .....+++...|.+
T Consensus 590 v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 590 VEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred EEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 5665444 34567999999999999999999999999999999886 357788888888 2 21223555555553
No 133
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.01 E-value=0.13 Score=44.87 Aligned_cols=53 Identities=28% Similarity=0.379 Sum_probs=44.8
Q ss_pred ceEecCCCCcHhHHHHhccccccc----ceEEEEECCEecCC---CccCCCCCeEEEEec
Q 002745 573 EIKNLPKGATVVDYAYMIHTEIGN----KMVAAKVNGNLVSP---THVLANAEVVEIITY 625 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~ig~----~~~~akvNG~~v~l---~~~L~~gd~VeIit~ 625 (885)
....+|.++|+.|+--.+-...+. ..+...|||+.++. +++|++||.|.|++.
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 577889999999998777666542 55678899999999 999999999999973
No 134
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.92 E-value=0.21 Score=63.14 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=49.5
Q ss_pred ccccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 785 IATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 785 ~v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
.|.|+++.+...+-|.|.+.||||||++|+++|++.|++|.+..+.|. + ..+.=.|-|+
T Consensus 772 ~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~-g-erv~D~Fyv~ 830 (854)
T PRK01759 772 EVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTI-G-EKAEDFFILT 830 (854)
T ss_pred EEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEccc-C-ceEEEEEEEE
Confidence 478887666667889999999999999999999999999999998865 2 4566677776
No 135
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=92.79 E-value=0.24 Score=47.51 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=49.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhc---cccCeeecc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVD---LILGVLGWS 868 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~---~V~gV~~V~ 868 (885)
.|+|-..|++|=|+.++++|+++||||+..++. +. ..+..+++.|. +.+.-.+++..=. ++.+|+-|.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiA-dt-~dFGIiRmvV~-~~d~A~~~Lee~gF~Vr~~dVlaVE 75 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIA-DT-GDFGIIRMVVD-RPDEAHSVLEEAGFTVRETDVLAVE 75 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEec-cc-cCcceEEEEcC-ChHHHHHHHHHCCcEEEeeeEEEEE
Confidence 588999999999999999999999999999876 32 36778888887 3344344444322 444555443
No 136
>PRK04374 PII uridylyl-transferase; Provisional
Probab=92.46 E-value=0.31 Score=61.78 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=48.9
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
|.|.+......+.|.|.+.||+|||++|+.+|++.++||.++.+.|. ++.+.=.|.|.
T Consensus 786 V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~--g~~a~D~F~V~ 843 (869)
T PRK04374 786 VEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF--GERAEDQFQIT 843 (869)
T ss_pred EEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec--CCEEEEEEEEE
Confidence 56765544456789999999999999999999999999999999876 36787788886
No 137
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=92.27 E-value=0.41 Score=48.30 Aligned_cols=72 Identities=18% Similarity=0.120 Sum_probs=52.8
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
...+..+--+.+|+||.|++.||+.|++|+.+-.+...-.+...+.+..|.-+- ..++..|++++||..|+.
T Consensus 95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP--~~li~el~~i~gVk~i~I 166 (167)
T COG2150 95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIP--GDLIDELKKIDGVKKISI 166 (167)
T ss_pred EEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCC--HHHHHHHhcccCceeEEe
Confidence 345555667789999999999999999999996653222344666666662221 468899999999998864
No 138
>PRK08818 prephenate dehydrogenase; Provisional
Probab=92.21 E-value=0.43 Score=54.73 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=50.0
Q ss_pred EEEEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--cCHHHHHHHHHHhcc
Q 002745 797 QWFSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GNLESLVNACSSVDL 860 (885)
Q Consensus 797 ~~I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~d~e~L~rll~kI~~ 860 (885)
..|.+... |+||.|++|+++++..++||+++++...+ .+.+.+.+.++ .|...|.|.-+.|..
T Consensus 296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~~~~~~~~~~~~~~~~~~~ 361 (370)
T PRK08818 296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGFEPGSDRAALARAAAEIDA 361 (370)
T ss_pred eEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEEeccccHHHHHHHHhhhch
Confidence 45777774 99999999999999999999999984333 34555777777 778889888887763
No 139
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=91.75 E-value=0.86 Score=52.97 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=56.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
...++|+.-||||.|+++.+.+...+.||..+.-....+.+.+.+.+.|| .+.+|++.++..|++..
T Consensus 325 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~G 392 (409)
T TIGR02079 325 KHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERMAAAD 392 (409)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHHHHCC
Confidence 56799999999999999999777777799988765322345688999999 99999999999998864
No 140
>PRK06545 prephenate dehydrogenase; Validated
Probab=91.67 E-value=0.36 Score=54.97 Aligned_cols=60 Identities=23% Similarity=0.157 Sum_probs=45.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHH
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACS 856 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~ 856 (885)
+.+|.|..-||||.|+.|++.+++.++||.++.+...++.....+++.+. +.+...+...
T Consensus 290 ~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~ 349 (359)
T PRK06545 290 FYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK-NEEDRERAKA 349 (359)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC-CHHHHHHHHH
Confidence 34688889999999999999999999999999987665544556666666 3343343333
No 141
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=91.33 E-value=0.46 Score=51.70 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=47.1
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--cCHHHHHHHHHHhccc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GNLESLVNACSSVDLI 861 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~d~e~L~rll~kI~~V 861 (885)
..|.|.|-|++|+++.||+.|++.|.||...+--++...+.+-|+..+. .+...++.+.+.+..+
T Consensus 8 ~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~ 74 (287)
T COG0788 8 FILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPL 74 (287)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHH
Confidence 4689999999999999999999999999888655454456676766666 4423344444444443
No 142
>PRK14707 hypothetical protein; Provisional
Probab=91.25 E-value=0.86 Score=60.73 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=102.2
Q ss_pred ccccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccccccceeEEEEEecChHHHHHHHH----hcCCCC--
Q 002745 321 FMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVL----KSRGSI-- 394 (885)
Q Consensus 321 f~~l~p~~y~~i~~~l~~~~~~~~~~i~~~~~~L~~~L~~~~~l~~~~i~~~V~gR~K~~ySI~~Km~----rk~~~~-- 394 (885)
|+-+.|+.-....+.+...-..-|..|...+ +..+...+. .. .....|.|+..|+.+|+. .++.++
T Consensus 2263 ~~~~~p~~~~~~a~~Ll~~A~~~Ep~ITp~L---r~ia~~~~G-~L----~GLe~RLKS~~SLkrKL~~~~~~~~~slee 2334 (2710)
T PRK14707 2263 LRDVQPQDIALKAQTLLGRARQMEPQVTDML---QNIAARHGG-QL----AGTQHQLKSYSSLQEKLKQRVALKKQSLEE 2334 (2710)
T ss_pred hccCCHHHHHHHHHHHHHHHHhccccccHHH---HHHHHHhcC-cc----cchHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 5566677777766666665555555555433 333322110 11 223468999999999985 345555
Q ss_pred --CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-cCCcccccccccccCCCCCCccceeEEEeccCCccce
Q 002745 395 --NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (885)
Q Consensus 395 --~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~-~~~pip~r~kDyIa~PK~NGYqSLHttV~~~~~~~~~ 471 (885)
..|+|.+-.=||+++. .++..+..+++.+.. -|+-+ +++.+- ..+.++|..+++|+..++ |.
T Consensus 2335 Aaa~VnDALRYTVVLpp~---------~Fva~~r~Il~aL~~qGy~~v--kvkN~F-~~~~~~YkGINvtL~~pd---G~ 2399 (2710)
T PRK14707 2335 AAASVNDALRYSVVLEPQ---------GFTAGLRAVLAALDDQGHARV--KLTNQF-TEYSPSFKAINLTLRSPE---GA 2399 (2710)
T ss_pred HHHHhhhheeEEEEcCch---------hHHHHHHHHHHHHHHcCCeEE--EEeecc-cCCCCCccceEEEEEcCC---Cc
Confidence 6789976666676653 378899999988754 46655 566655 334589999999997544 37
Q ss_pred eEEEEEechhHHHHHHHhHHhhccCCcc
Q 002745 472 RLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (885)
Q Consensus 472 ~vEIQIRT~~Mh~~AE~Giaahw~yK~~ 499 (885)
.+|||-=|.+--..-+. .|=.||+.
T Consensus 2400 ~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2400 LWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred EEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 99999999887666653 56678874
No 143
>PRK08639 threonine dehydratase; Validated
Probab=91.21 E-value=0.8 Score=53.34 Aligned_cols=68 Identities=13% Similarity=0.102 Sum_probs=56.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccC
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILG 863 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~g 863 (885)
...++|+.-||||.|+++.+.+...+.||..+.-....+.+...+.++|| .+.+|.+++++.|++..-
T Consensus 336 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~~Gy 404 (420)
T PRK08639 336 KHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEAFGP 404 (420)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHHCCC
Confidence 56799999999999999999777777799999765322345568899999 999999999999998543
No 144
>PRK11899 prephenate dehydratase; Provisional
Probab=90.79 E-value=1.2 Score=49.40 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=53.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEE-c-CHHHHHHHHHHhccccC
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-G-NLESLVNACSSVDLILG 863 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE-~-d~e~L~rll~kI~~V~g 863 (885)
.+.|.+...|++|.|.+|.++++..|+|++.+.....++ .+.+.+-++++ + +-..+.+.|..|++...
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~~d~~v~~aL~~l~~~~~ 264 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHPEDRNVALALEELRFFSE 264 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 455666778999999999999999999999999886532 35577888888 3 44577888888887544
No 145
>PRK05007 PII uridylyl-transferase; Provisional
Probab=90.02 E-value=1.1 Score=57.23 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=54.4
Q ss_pred ccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC-----HHHHHHHHHHhcc
Q 002745 787 TWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVDL 860 (885)
Q Consensus 787 ~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d-----~e~L~rll~kI~~ 860 (885)
.+++......+.|.|.+.||+|+|++|+.+|+..+.||.++.+.+. +++.+.=.|.|. .+ .+.+.++...|.+
T Consensus 692 ~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~ 770 (884)
T PRK05007 692 LLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQ 770 (884)
T ss_pred EEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 3444333346679999999999999999999999999999998765 346777778886 22 2456666666654
No 146
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=89.96 E-value=0.34 Score=43.87 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=41.8
Q ss_pred ceEecCCCCcHhHHHHhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEEEE
Q 002745 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEII 623 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv-----------------NG~--~v~l~~~L~~gd~VeIi 623 (885)
+.+.+++|+|+-+.|-.||+|+-+..+.|.| .|+ +-.-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 6789999999999999999999999998888 222 22337789999998763
No 147
>PRK05092 PII uridylyl-transferase; Provisional
Probab=89.83 E-value=1.1 Score=57.32 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=50.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE---c----CHHHHHHHHHHhccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---G----NLESLVNACSSVDLI 861 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE---~----d~e~L~rll~kI~~V 861 (885)
.+.|.|.+.||+|+|++|+.+|+..+.||.+..+.+.. ++.+...|.|. + +.+.+.+|...|.++
T Consensus 732 ~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~-dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~ 803 (931)
T PRK05092 732 VTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT-DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDA 803 (931)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec-CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999987653 46666668884 2 345666666666543
No 148
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=89.79 E-value=1.1 Score=57.02 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=54.2
Q ss_pred ccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC-----HHHHHHHHHHhcc
Q 002745 787 TWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-----LESLVNACSSVDL 860 (885)
Q Consensus 787 ~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d-----~e~L~rll~kI~~ 860 (885)
.+++......+.|.|.+.||+|+|++|+.+|+..+.||.+..+.+.. ++.+.-.|.|. .+ .+.+.++...|.+
T Consensus 668 ~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~-~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~ 746 (854)
T PRK01759 668 KISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQ-DGYVLDSFIVTELNGKLLEFDRRRQLEQALTK 746 (854)
T ss_pred EEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEcc-CCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 35444444466899999999999999999999999999999987643 46777788886 22 2455566666554
No 149
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.70 E-value=0.85 Score=40.56 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=39.6
Q ss_pred ceEecCCC-CcHhHHHHhc---cccccc--ceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 573 EIKNLPKG-ATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 573 ~i~~lp~g-sT~lDfAy~i---h~~ig~--~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
..+++|.+ +|+.|+.-.+ ++++.. ..+..-|||+.++.+++|++||.|.|+.
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 46778876 8888876555 333322 3456789999999999999999999986
No 150
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=89.53 E-value=2 Score=46.10 Aligned_cols=71 Identities=6% Similarity=-0.023 Sum_probs=57.4
Q ss_pred EEEEEEecccc--HHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE---cCHHHHHHHHHHhccccCeeecc
Q 002745 798 WFSVVCIDRRG--IMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE---GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 798 ~I~V~a~DR~G--lLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE---~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.+.|.|.+..+ +...+.+.+.+.+..+.++++....+.+...|..++. .+...|++++++|...|||..|+
T Consensus 144 ~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~~~pgV~~v~ 219 (225)
T PRK15385 144 ILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIH 219 (225)
T ss_pred EEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHhCCCCeEEEE
Confidence 57788877664 6899999999999999999986443345566766666 47899999999999999999875
No 151
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=89.47 E-value=1 Score=38.13 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=42.7
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVD 859 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~ 859 (885)
..|++|.+++|.++|++.++||..+..... ..+...+.|.+. .|.+.+.+++.++.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~-~~~~~~is~~v~~~d~~~~~~~l~~~~ 65 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVS-RDGTTDISFTVPKSDLKKALAVLEKLK 65 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCC-CCCcEEEEEEecHHHHHHHHHHHHHHH
Confidence 468999999999999999999987754322 122356778888 78888877777765
No 152
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=89.19 E-value=1.3 Score=42.80 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=47.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHH
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSS 857 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~k 857 (885)
-+-|++.|+||-|..|+.++.++++|+.-+-+-+.++ ..|.+-|.++ |.+...+.+..
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~e-d~d~~~~aLed 128 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVE-DIDRAIKALED 128 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhh-HHHHHHHHHHH
Confidence 5789999999999999999999999999888766544 6788888888 66655555543
No 153
>PRK04374 PII uridylyl-transferase; Provisional
Probab=89.07 E-value=1.4 Score=55.94 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=55.5
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--cC--HHHHHHHHHHhcc
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GN--LESLVNACSSVDL 860 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~d--~e~L~rll~kI~~ 860 (885)
+.|........+.+.|.+.||+|+++.|+.+|+..+.||.+..+.+. .+|.+.-.|.|. .+ .+...++...|.+
T Consensus 680 ~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~ 757 (869)
T PRK04374 680 KARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQDTYADGDPQRLAAALRQ 757 (869)
T ss_pred EEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 34542333335679999999999999999999999999999998865 357888888888 22 3556666666654
No 154
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=89.00 E-value=2.2 Score=36.65 Aligned_cols=51 Identities=33% Similarity=0.381 Sum_probs=35.6
Q ss_pred EEEEEEEe----ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHH
Q 002745 797 QWFSVVCI----DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 854 (885)
Q Consensus 797 ~~I~V~a~----DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rl 854 (885)
..|+|.+. |.+|+++.|++.|+++|+||..+++. ..+.|-|. .+.+.-.++
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~isS~-------~~~~ilV~~~~~~~A~~~ 62 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMISSE-------ISISILVKEEDLEKAVEA 62 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEEES-------SEEEEEEEGGGHHHHHHH
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEEEe-------eeEEEEEeHHHHHHHHHH
Confidence 45677666 79999999999999999999999833 22455566 454443333
No 155
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=88.67 E-value=1.7 Score=55.24 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred eeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-c------CHHHHHHHHHHhc
Q 002745 795 SIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-G------NLESLVNACSSVD 859 (885)
Q Consensus 795 ~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~------d~e~L~rll~kI~ 859 (885)
..+.|.|.+.||+|+|++|+.+|+..+.||.++.+.+.. ++.+.=.|.|. . +.+.+.++...|.
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~-~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~ 737 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTK-DGVALDTFVVQDLFGSPPAAERVFQELLQGLV 737 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEec-CCEEEEEEEEECCCCCCCCcHHHHHHHHHHHH
Confidence 356799999999999999999999999999999988553 46777788886 2 2234666665554
No 156
>PRK00907 hypothetical protein; Provisional
Probab=88.65 E-value=2.4 Score=39.36 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=55.3
Q ss_pred EEEEEEeccccHHHHHHHHHHhCC--cceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002745 798 WFSVVCIDRRGIMADVTTALATVG--VTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~--iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~ 865 (885)
.|.|.+.++.++...|..++.+.. .+-..++++..+++....++++|. .+.+||+.+=..|.+.++|.
T Consensus 19 piKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~~~~~Vk 89 (92)
T PRK00907 19 ELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALRDHPEVK 89 (92)
T ss_pred eEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 589999999999999999997653 344555555444545667889998 99999999999999999984
No 157
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=88.53 E-value=1.2 Score=40.12 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=54.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--cCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.|.+.+.++|++|-.|-.+....|.-++++++...-+.+.+.+.|+|. ...+- +-++|.++-+|..|++
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R~~~l---L~~QLeKl~Dv~~V~i 75 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDRSVDL---LTSQLEKLYDVAHVEI 75 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCCChHH---HHHHHHHHccceeEEE
Confidence 377889999999999999999999999999987654567899999999 44444 4556666666666654
No 158
>PRK12483 threonine dehydratase; Reviewed
Probab=88.48 E-value=1.5 Score=52.68 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHH-HHHHHHhcc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESL-VNACSSVDL 860 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L-~rll~kI~~ 860 (885)
...|.|+.-||||.|++++++|+.. ||..++-.. ...+.+.+.+.|| ++.+|+ ..++.+|++
T Consensus 345 ~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~-~~~~~~~v~v~ie~~~~~~~~~~i~~~l~~ 408 (521)
T PRK12483 345 EAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRY-ADAREAHLFVGVQTHPRHDPRAQLLASLRA 408 (521)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEe-cCCCeeEEEEEEEeCChhhhHHHHHHHHHH
Confidence 5679999999999999999999987 999887764 2345689999999 999998 999999976
No 159
>PLN02550 threonine dehydratase
Probab=88.27 E-value=1.4 Score=53.59 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=54.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 861 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V 861 (885)
...|.|+.-||||.|++++++|+.. ||..++-... ..+.+.+.+.|| ++.+|+..++.+|++-
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~-~~~~~~v~v~ie~~~~~~~~~i~~~l~~~ 480 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYS-SEKEALVLYSVGVHTEQELQALKKRMESA 480 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEec-CCCceEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 4678999999999999999999975 9999876642 346799999999 9999999999999863
No 160
>PRK04998 hypothetical protein; Provisional
Probab=88.06 E-value=2.8 Score=38.38 Aligned_cols=68 Identities=10% Similarity=0.108 Sum_probs=52.7
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~ 865 (885)
.+.|.+.+..+++..|..++.+..-.-..+.....+++....++++|. .+.+||..+-.+|.+++||.
T Consensus 17 ~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 17 TYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAKIEGVR 85 (88)
T ss_pred eEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHHHHHHHHHHHhcCCCEE
Confidence 488899999999999999997642222224444344445667888888 89999999999999999995
No 161
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=0.93 Score=56.03 Aligned_cols=58 Identities=21% Similarity=0.268 Sum_probs=45.5
Q ss_pred cccCCCCCceeEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE
Q 002745 786 ATWHNLEGHSIQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE 845 (885)
Q Consensus 786 v~W~~~~~~~~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE 845 (885)
|.|.+......+.++|++.||+|+|++|+.++++.+.+|.+.++.|- + ..+.=.|.|.
T Consensus 781 v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~-G-ErveD~F~vt 838 (867)
T COG2844 781 VTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF-G-ERVEDVFIVT 838 (867)
T ss_pred eeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc-c-ccceeEEEEe
Confidence 67766555545679999999999999999999999999999998864 2 2344455555
No 162
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=87.45 E-value=1.7 Score=39.00 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=47.6
Q ss_pred EEEEEEEeccccHHHHHHHHHHh-CCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecc
Q 002745 797 QWFSVVCIDRRGIMADVTTALAT-VGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~-~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
+.+-|.+ +|+-+.+|.+.|++ .|+-|.... . . ..+-++|| .+...+...+.+|+.++||+++.
T Consensus 6 ss~vV~~--~p~~~~~v~~~l~~~~gvEVh~~~---~--~--GKiVVtiE~~~~~~~~~~~~~i~~l~GVlsa~ 70 (79)
T PF03927_consen 6 SSLVVHA--RPERLEEVAEALAAIPGVEVHAVD---E--D--GKIVVTIEAESSEEEVDLIDAINALPGVLSAS 70 (79)
T ss_dssp EEEEEEE---CCCHHHHHHHHCCSTTEEEEEEE---T--T--TEEEEEEEESSHHHHHHHHHHHCCSTTEEEEE
T ss_pred EEEEEEE--CchhHHHHHHHHHcCCCcEEEeeC---C--C--CeEEEEEEeCChHHHHHHHHHHHcCCCceEEE
Confidence 3344444 88999999999987 455443332 1 1 44778899 89999999999999999999986
No 163
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=87.37 E-value=2.3 Score=49.96 Aligned_cols=73 Identities=14% Similarity=-0.030 Sum_probs=57.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCC-cE-EEEEEEEEcCHHHHHHHHHHhccccCeeecc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGR-GI-AVMLFHVEGNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~-~~-a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.+.|.+...|++|.|++|-+++++.||||+.+.+...+.. .. +.+-++++.+...+..++..|++...+..|+
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~~~~l~~aL~~Lk~~~~~~~~~ 105 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELFHYGLQEAMDLLKSGLDVHEVS 105 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcCHHHHHHHHHHHHHhcccceec
Confidence 4567788899999999999999999999999998765322 23 5666777756678999999999877765554
No 164
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.99 E-value=1.8 Score=34.87 Aligned_cols=50 Identities=26% Similarity=0.427 Sum_probs=36.2
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHH
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVN 853 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~r 853 (885)
..|++|.+++|.+.|++.++||..+..... ..+...+.|.+. .|.+...+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~-~~~~~~is~~v~~~~~~~~~~ 58 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVS-RGGTTDISFTVPKSDLEKALA 58 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCC-CCCcEEEEEEEeHHHHHHHHH
Confidence 578899999999999999999988865422 123356778887 55544433
No 165
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.91 E-value=0.91 Score=42.09 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=39.8
Q ss_pred ceEecCCCCcHhHHHHh-----cccccccceEEEEECCEecCCCccCCCCCeEEEEec
Q 002745 573 EIKNLPKGATVVDYAYM-----IHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~-----ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~ 625 (885)
.-+.|+.|+|+.|..-+ +.++++-+.-..=|=|+.+.++.+|++||.|||.-.
T Consensus 19 ~~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIyRP 76 (99)
T COG2914 19 CRVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIYRP 76 (99)
T ss_pred EEEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEecc
Confidence 35789999999998644 456665542222345889999999999999999764
No 166
>PRK00341 hypothetical protein; Provisional
Probab=86.66 E-value=3.6 Score=38.05 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=54.6
Q ss_pred EEEEEEeccccHHHHHHHHHHhC-CcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002745 798 WFSVVCIDRRGIMADVTTALATV-GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~-~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~ 865 (885)
.+.|.+.+.+++...|..++.+. +.+-..+.+...+++....++++|. .+.+||..+-..|++.++|.
T Consensus 19 ~~KViG~~~~~~~~~V~~iv~~~~~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 19 PIKVIGDTGVGFKDLVIEILQKHADVDLSTLAERQSSNGKYTTVQLHIVATDEDQLQDINSALRATGRVH 88 (91)
T ss_pred cEEEEEcCchhHHHHHHHHHHHhCCCcccceeeccCCCCEEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48999999999999999999753 3344455555444555667899999 99999999999999999994
No 167
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=85.88 E-value=3.8 Score=45.34 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=56.3
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec-CCcEEEEEEEEE--cCHHHHHHHHHHhccccCee
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE--GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~f~IE--~d~e~L~rll~kI~~V~gV~ 865 (885)
.+.|-+..-|+||.|.++-.+++..|||++.+.....+ .-+.+.+-+++| .+..++...|..|++....+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~~~v~~AL~el~~~t~~~ 266 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDDPLVKEALEELKEITEFV 266 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCcHhHHHHHHHHHhheeEE
Confidence 45677777799999999999999999999999987653 335678888888 45567888999998776643
No 168
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=85.85 E-value=2.3 Score=54.40 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=51.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC-------HHHHHHHHHHhccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN-------LESLVNACSSVDLI 861 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d-------~e~L~rll~kI~~V 861 (885)
.+.+.|.+.||+|++++|+.+|+..+.||.+..+.+. +++.+.=.|.|. .+ .+.+.++...|.++
T Consensus 704 ~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~ 776 (895)
T PRK00275 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEA 776 (895)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998765 357777788885 21 24566677766654
No 169
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=85.53 E-value=2.8 Score=50.03 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=55.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
.+.+.|+.-||||.|+++.++|+. .||+.++-... +.+.+.+.+.|| .+.+|+..++.+|++..
T Consensus 325 e~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~-~~~~a~v~vgie~~~~~~~~~l~~~L~~~G 389 (499)
T TIGR01124 325 EALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYA-DRKDAHIFVGVQLSNPQERQEILARLNDGG 389 (499)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEec-CCCeEEEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 567999999999999999999996 69998887632 446788999999 99999999999998643
No 170
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=85.15 E-value=3.6 Score=47.66 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=52.3
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEE-c-CHHHHHHHHHHhccccC
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-G-NLESLVNACSSVDLILG 863 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE-~-d~e~L~rll~kI~~V~g 863 (885)
+.|.+...|++|.|.+|-++++..|+|++.+.....++ .+.+.+-++++ + +-..+.+.+..|+....
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~d~~~~~aL~~l~~~~~ 367 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQANLRSAEMQKALKELGEITR 367 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 44556667999999999999999999999999886433 35677888888 3 44568888888887543
No 171
>PRK03059 PII uridylyl-transferase; Provisional
Probab=84.99 E-value=2.9 Score=53.21 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=50.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE--c----CHHHHHHHHHHhcc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE--G----NLESLVNACSSVDL 860 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE--~----d~e~L~rll~kI~~ 860 (885)
.+.|.|.+.||+|++++|+.+|+..+.||.+..+.+. .+|.+.-.|.|. . +.+.++++...|.+
T Consensus 678 ~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~ 747 (856)
T PRK03059 678 GLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDPEEDVHYRDIINLVEHELAE 747 (856)
T ss_pred eEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999998755 357888888885 1 22345556555554
No 172
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.96 E-value=4 Score=36.16 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=42.1
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCH---HHHH-HHHHHhccccCe
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL---ESLV-NACSSVDLILGV 864 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~---e~L~-rll~kI~~V~gV 864 (885)
..+++|++++|.++|++.++||.-+.+. . ..+.|+|. .+. +.|. .+++.|+++..|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~s---~---~~iSftv~~~d~~~~~~~~~~l~~~l~~~~~v 71 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITTS---E---ISVALTLDNTGSTSDQLLTQALLKELSQICDV 71 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEeec---C---CEEEEEEeccccchhHHHHHHHHHHHHhccEE
Confidence 4788999999999999999999999642 1 55888888 552 2465 677777775433
No 173
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=83.77 E-value=3.7 Score=37.71 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=47.3
Q ss_pred EEeccccHHHHHHHHHHh-CCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 802 VCIDRRGIMADVTTALAT-VGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 802 ~a~DR~GlLadItsvIa~-~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.+.=+|.-+++|.+.|.+ .|+-|-.... ....+-++|| .+...+...+.+|+.++||++++-
T Consensus 11 VV~~~Pe~~~~V~~~l~~ipg~Evh~~d~------~~GKiVVtiE~~~~~~~~~~i~~I~~l~GVlsa~l 74 (87)
T PRK10553 11 VVQAKSERISDISTQLNAFPGCEVAVSDA------PSGQLIVVVEAEDSETLLQTIESVRNVEGVLAVSL 74 (87)
T ss_pred EEEeChHHHHHHHHHHHcCCCcEEEeecC------CCCeEEEEEEeCChHHHHHHHHHHHcCCCceEEEE
Confidence 345678889999999986 4554433321 1245788999 899999999999999999999863
No 174
>PRK02047 hypothetical protein; Provisional
Probab=82.92 E-value=7.1 Score=36.13 Aligned_cols=68 Identities=10% Similarity=-0.012 Sum_probs=55.0
Q ss_pred EEEEEEeccccHHHHHHHHHHhC--CcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002745 798 WFSVVCIDRRGIMADVTTALATV--GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~--~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~ 865 (885)
.+.|.+.+..++...|..++... +..-..+++...+++....++++|. .+.+||..+=..|.+.++|.
T Consensus 18 ~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq~~~iY~~L~~~~~Vk 88 (91)
T PRK02047 18 PIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTGHPMVK 88 (91)
T ss_pred eEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHHHHHHHHHHhhCCCEE
Confidence 48899999999999999999875 3334556665454555667888888 89999999999999999984
No 175
>PRK09224 threonine dehydratase; Reviewed
Probab=82.51 E-value=4.2 Score=48.67 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=54.5
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHH-HHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLES-LVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~-L~rll~kI~~V~ 862 (885)
.+.+.|+.-||||-|+++.++|+ +.||..++-+.. +.+.+.+.+.|| .+.+| +..++++|++..
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~-~~~~a~V~vgie~~~~~~~~~~i~~~L~~~g 393 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYA-DAKEAHIFVGVQLSRGQEERAEIIAQLRAHG 393 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEec-CCCeEEEEEEEEeCChhhHHHHHHHHHHHcC
Confidence 56799999999999999999999 689999887643 446788999999 88888 999999997643
No 176
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=82.44 E-value=2.1 Score=45.96 Aligned_cols=50 Identities=24% Similarity=0.088 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHHH--------cCCCHHH-HHHHhhcccc
Q 002745 145 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE--------LELDWES-IAAGLLHDTV 201 (885)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~--------l~~D~~t-I~AALLHDvv 201 (885)
|..++++|.+|+.+.... .-+.|.++|...... ++.|.+. .+||||||+-
T Consensus 37 dt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG 95 (228)
T TIGR03401 37 DTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG 95 (228)
T ss_pred ChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc
Confidence 567788999999876542 346899999864321 3677765 6899999986
No 177
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=82.13 E-value=6.6 Score=46.04 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=53.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
.+.|.+...|++|.|++|-+++++.||||+.+.+...+. ...+.+-++++ ...+.+..++..|++.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~~~~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEASDRKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecCccHHHHHHHHHHHHhc
Confidence 456777889999999999999999999999999876432 23467777777 43488999999998865
No 178
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=81.80 E-value=5 Score=45.64 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=36.4
Q ss_pred ccchHHHHHHHHH----HcCCCHHH-HHHHhhccccccCCC------CCHHHHHH-HhCHHHHHHHhhhc
Q 002745 171 FIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTNV------VTFERIEE-EFGATVRRIVEGET 228 (885)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~t-I~AALLHDvvEDT~~------~t~e~I~~-~FG~~Va~LV~glT 228 (885)
.+.|.++|+.... .++.|.+. ++||||||+-..... ...+-|++ .|.++++.+|....
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4789999998743 45777765 677999999532210 11233333 25678888886544
No 179
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=80.77 E-value=3.1 Score=37.51 Aligned_cols=50 Identities=26% Similarity=0.169 Sum_probs=37.7
Q ss_pred eEecCCCCcHhHHHHhc---cccccc----------ceEEEEECCEecCCCc--cCCCCCeEEEEe
Q 002745 574 IKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTH--VLANAEVVEIIT 624 (885)
Q Consensus 574 i~~lp~gsT~lDfAy~i---h~~ig~----------~~~~akvNG~~v~l~~--~L~~gd~VeIit 624 (885)
.+++| |+|+.|+--.+ |+++.. ..+..-|||+.++.+. +|++||.|.|+.
T Consensus 19 ~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 19 EIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred EEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 45677 89999986665 443221 2357789999998887 999999999986
No 180
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=80.64 E-value=4.1 Score=36.84 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=52.5
Q ss_pred EEEEEEeccccHHHHHHHHHHhC--CcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002745 798 WFSVVCIDRRGIMADVTTALATV--GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~--~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~ 865 (885)
.+.|.+.+..++..+|..++.+. ++.-..++....+++....+++++. .+.+|+..+-.+|+++++|.
T Consensus 12 ~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v~s~eq~~~iy~~L~~~~~Vk 82 (85)
T PF04359_consen 12 PFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTVESAEQVDAIYRELKAHPGVK 82 (85)
T ss_dssp EEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEESSHHHHHHHHHHHTTSSSEE
T ss_pred eEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEECCHHHHHHHHHHhccCCCEE
Confidence 58899999999999999988763 2233444444444556778899999 99999999999999999996
No 181
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=80.34 E-value=3.8 Score=36.16 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=44.0
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCH-H-HHHHHHHHhccccCe
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-E-SLVNACSSVDLILGV 864 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~-e-~L~rll~kI~~V~gV 864 (885)
..-++|.+++|.+++++.++|+.-+... ...+.|++. .+. . +|..+++.|+++..|
T Consensus 11 m~~~~g~~~~If~~la~~~I~vd~I~~s------~~~isftv~~~~~~~~~l~~l~~el~~~~~v 69 (73)
T cd04934 11 KSLSHGFLARIFAILDKYRLSVDLISTS------EVHVSMALHMENAEDTNLDAAVKDLQKLGTV 69 (73)
T ss_pred CccccCHHHHHHHHHHHcCCcEEEEEeC------CCEEEEEEehhhcChHHHHHHHHHHHHheEE
Confidence 3456999999999999999999999642 155888888 543 2 899999999885543
No 182
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.97 E-value=4.9 Score=35.57 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=44.4
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC----HHHHHHHHHHhccccCe
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN----LESLVNACSSVDLILGV 864 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d----~e~L~rll~kI~~V~gV 864 (885)
..+.+|++++|.+++++.++|+.-+... ...+.|+|. .+ .+.+..+++.|+++..|
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~~s------~~~isftv~~~~~~~~~~~~~~l~~el~~~~~v 71 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVSTS------ETNVTVSLDPDPNGLDPDVLDALLDDLNQICRV 71 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEeC------CCEEEEEEeCcccccchHHHHHHHHHHHhceEE
Confidence 4578999999999999999999999642 155889999 44 23788999999886544
No 183
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=79.89 E-value=6.8 Score=39.54 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=54.7
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEEcC-HHHHHHHHHHhccccCeeeccc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVEGN-LESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE~d-~e~L~rll~kI~~V~gV~~V~~ 869 (885)
..+.|+..|+||=|-.+-+=|+..|+||.++.-+.++. .+...+.++++.| .+....++..+ .-.||.=++.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~~~~~~i~~~~-e~~Gi~I~~~ 79 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDREDKDAKIIRLL-EEEGIIIIRF 79 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecccHHHHHHHHHH-HhCCcEEEEe
Confidence 46899999999999999999999999999996554432 4567778888844 55556666666 7778776655
No 184
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.37 E-value=0.65 Score=53.85 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=52.0
Q ss_pred cCCCceEecCC-CCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEecCCCCC
Q 002745 569 TPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSS 630 (885)
Q Consensus 569 tP~G~i~~lp~-gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit~~~~~~ 630 (885)
.|+|++++.-. +.||.|+|-. ...+++.++.++|||.+.+|+.+|+..- +|+++..+...
T Consensus 5 Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~ 65 (560)
T KOG1637|consen 5 LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEG 65 (560)
T ss_pred cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCccc
Confidence 89998777665 8899999999 8889999999999999999999997655 99998876543
No 185
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=78.81 E-value=1.1 Score=40.63 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCcccchHHHHHHHHHHcC------CCHHHHHHHhhcccccc
Q 002745 168 GEPFIIHPVEVARILGELE------LDWESIAAGLLHDTVED 203 (885)
Q Consensus 168 GePYi~Hpl~VA~iLa~l~------~D~~tI~AALLHDvvED 203 (885)
+++.+.|.+.|+.+...+. ......+||||||+-+.
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~ 43 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKP 43 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCc
Confidence 5678899999999876542 23457899999999754
No 186
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=78.68 E-value=5.3 Score=33.22 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=38.6
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCH--HHHHHHHHHhc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNL--ESLVNACSSVD 859 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~--e~L~rll~kI~ 859 (885)
..+++|..++|.++|++.++|+.-+.+. ...+.|+|..+. +.+.++++.|+
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~t~------~~~is~~v~~~~~~~~~~~l~~~l~ 62 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIPTS------ENSVTLYLDDSLLPKKLKRLLAELE 62 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEecC------CCEEEEEEehhhhhHHHHHHHHhhC
Confidence 3477999999999999999999999542 144778888332 57777777663
No 187
>PRK11898 prephenate dehydratase; Provisional
Probab=78.07 E-value=9.1 Score=42.45 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=50.6
Q ss_pred eEEEEEEEec-cccHHHHHHHHHHhCCcceeeeEEeeecC-CcEEEEEEEEE--cCHHHHHHHHHHhccccC
Q 002745 796 IQWFSVVCID-RRGIMADVTTALATVGVTICSCVAEIDRG-RGIAVMLFHVE--GNLESLVNACSSVDLILG 863 (885)
Q Consensus 796 ~~~I~V~a~D-R~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a~m~f~IE--~d~e~L~rll~kI~~V~g 863 (885)
.+.|.+...| ++|.|.++-+++++.|+||+.+.....++ ...+.+-++++ .+-+.+.+++..|++.-.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~~~~~~~~~al~~L~~~~~ 267 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGHIDDVLVAEALKELEALGE 267 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEccCCCHHHHHHHHHHHHhcC
Confidence 3446666655 59999999999999999999999886432 23467777777 233378899999887543
No 188
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=77.84 E-value=8.3 Score=32.59 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=36.2
Q ss_pred EEEEE---eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHH
Q 002745 799 FSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 855 (885)
Q Consensus 799 I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll 855 (885)
|.|.+ .+.+|+++++.++|++.++||..+.+. -..+.|.|. .|.+...+.+
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~S------e~~is~~v~~~~~~~av~~L 58 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADS------HTTISCLVSEDDVKEAVNAL 58 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcC------ccEEEEEEcHHHHHHHHHHH
Confidence 45554 378999999999999999999766531 244777777 5555544433
No 189
>PLN02317 arogenate dehydratase
Probab=77.34 E-value=9.9 Score=43.96 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=51.1
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCC---------------cEEEEEEEEE-c-CHHHHHHHHHHh
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGR---------------GIAVMLFHVE-G-NLESLVNACSSV 858 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~---------------~~a~m~f~IE-~-d~e~L~rll~kI 858 (885)
.+.|.+...|++|.|.++-++++..+|||+.+.....+.. ..+.+-+++| . +-+.+..+|..|
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~~d~~~~~aL~~L 362 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASMADPRAQNALAHL 362 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcCcCCHHHHHHHHHH
Confidence 3557777789999999999999999999999998765433 2356667777 3 235577888888
Q ss_pred ccccC
Q 002745 859 DLILG 863 (885)
Q Consensus 859 ~~V~g 863 (885)
+..-.
T Consensus 363 ~~~~~ 367 (382)
T PLN02317 363 QEFAT 367 (382)
T ss_pred HHhcC
Confidence 77443
No 190
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=76.92 E-value=0.68 Score=52.79 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.9
Q ss_pred cceEeec-CCC------------ceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEE
Q 002745 563 SRVFVFT-PRG------------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEI 622 (885)
Q Consensus 563 ~~V~Vft-P~G------------~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeI 622 (885)
++|.++| .+| +....+.|||++||+|.||++--.+++.|. .-+...-+|.+++||++.+
T Consensus 297 ~evrawti~~g~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag-~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 297 KEVRAWTIKDGSKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAG-KRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred CeEEEEEeccCCcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhc-ceeeccccceecCCCEEEE
Confidence 6788887 223 577889999999999999998333333333 2223777999999999954
No 191
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=76.81 E-value=8.5 Score=31.42 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=37.4
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 857 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~k 857 (885)
.+.+|++++|.+.+++.++++..++.. + ..+.|.|. .|.+.+.+++.+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s---~---~~is~~v~~~d~~~~~~~l~~ 59 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMISTS---E---IKISCLIDEDDAEKAVRALHE 59 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEcc---C---ceEEEEEeHHHHHHHHHHHHH
Confidence 477999999999999999999888642 1 45778998 777766666543
No 192
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=76.08 E-value=11 Score=32.49 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=41.9
Q ss_pred EEEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcc
Q 002745 798 WFSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL 860 (885)
Q Consensus 798 ~I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~ 860 (885)
.++|... |.+|.+++|.+.|++.++||.-++.. . . .+.|+|. .|......++...+-
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~--~---~isFtv~~~d~~~~~~il~~~~~ 61 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-P--E---EVIFTVDGEVAEKAVDILEKMGL 61 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-C--C---CEEEEEchhhHHHHHHHHHHcCC
Confidence 3455433 56899999999999999999999433 1 1 4889999 777777666665543
No 193
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=75.60 E-value=11 Score=30.44 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=35.0
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 855 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll 855 (885)
+++|++++|.+.+++.++++..+.... ....+.|++. .+.+.+.+.+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~----~~~~i~~~v~~~~~~~~~~~l 59 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS----SEVNISFVVDEDDADKAVKAL 59 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC----CceeEEEEEeHHHHHHHHHHH
Confidence 789999999999999999998886531 1255778888 5655554444
No 194
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=74.66 E-value=14 Score=30.66 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=37.0
Q ss_pred EEEEE---eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHH
Q 002745 799 FSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 854 (885)
Q Consensus 799 I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rl 854 (885)
|.|++ .+.+|++++|.++|++.++++..+.... . ...+.|.|. .+.+.+.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~-s---~~~is~~v~~~~~~~~~~~ 59 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS-S---ERNISAVIDEDDATKALRA 59 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC-c---ccEEEEEEeHHHHHHHHHH
Confidence 44444 4789999999999999999998885421 1 256788888 555544433
No 195
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=74.23 E-value=13 Score=39.70 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=50.4
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.+.|++.+. -+.++.+.+.+.++.+.+++.+...+. ..+.+++. ++...+..++++|+++++|.+|+.
T Consensus 146 ~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~V~~v~~ 214 (215)
T PRK09977 146 HLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDH--EVVAIDITLHATTSIEDLYRLLKGIAGVKGVSI 214 (215)
T ss_pred EEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCC--cEEEEEEEECCCCCHHHHHHHHhcCCCceEEEe
Confidence 345554433 368888999999999999988744322 34666666 667788899999999999998863
No 196
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.81 E-value=11 Score=30.69 Aligned_cols=48 Identities=23% Similarity=0.246 Sum_probs=36.6
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 857 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~k 857 (885)
.+.+|++++|.+.|++.++++..++.. + ..+.|.|. .+.+.+.+++.+
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~s---~---~~is~~v~~~~~~~~~~~l~~ 59 (63)
T cd04923 11 RSHPGVAAKMFKALAEAGINIEMISTS---E---IKISCLVDEDDAEKAVRALHE 59 (63)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEcc---C---CeEEEEEeHHHHHHHHHHHHH
Confidence 467899999999999999999888742 1 44778888 676666555543
No 197
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=73.69 E-value=12 Score=29.50 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESL 851 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L 851 (885)
+.+|.+++|.++|++.+++|..+..... ...+.|.+. .+.+.+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~----~~~~s~~v~~~~~~~~ 55 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSES----EVNISFTVDESDLEKA 55 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCC----cEEEEEEEeHHHHHHH
Confidence 4789999999999999999998875421 244667887 444433
No 198
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=73.01 E-value=9.7 Score=33.34 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=42.1
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC----HHHHHHHHHHhccc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN----LESLVNACSSVDLI 861 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d----~e~L~rll~kI~~V 861 (885)
..+.+|++++|.++|++.++|+..+.+. ...+.|.|. .+ ...|..+++.|.++
T Consensus 11 l~~~~g~~~~if~~L~~~~I~v~~i~~s------~~~is~~v~~~~~~~~~~~~~~~~~~l~~~ 68 (75)
T cd04912 11 MLGAHGFLAKVFEIFAKHGLSVDLISTS------EVSVSLTLDPTKNLSDQLLLDALVKDLSQI 68 (75)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEcC------CcEEEEEEEchhhccchHHHHHHHHHHHhC
Confidence 3677999999999999999999888642 145788888 55 35888888888883
No 199
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.90 E-value=17 Score=30.09 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=36.0
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
+++|++++|.+.|++.++||.-+..... ...+.|.|. .|.+.+.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s----~~~isf~i~~~~~~~~~~~Lh 61 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSS----EYNISFVVAEDDGWAAVKAVH 61 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCc----cceEEEEEeHHHHHHHHHHHH
Confidence 6789999999999999999988864321 145778888 66666655543
No 200
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=72.27 E-value=1.6 Score=40.16 Aligned_cols=31 Identities=35% Similarity=0.378 Sum_probs=22.8
Q ss_pred cchHHHHHHHHHHc----C--CCHH-HHHHHhhccccc
Q 002745 172 IIHPVEVARILGEL----E--LDWE-SIAAGLLHDTVE 202 (885)
Q Consensus 172 i~Hpl~VA~iLa~l----~--~D~~-tI~AALLHDvvE 202 (885)
+.|.+.|+.+...+ + .+.+ ..+||||||+=.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk 39 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGK 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTH
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCC
Confidence 57999999987654 3 2222 579999999864
No 201
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=72.17 E-value=9.5 Score=34.10 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCcHhHHHHhc---ccc----cccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 579 KGATVVDYAYMI---HTE----IGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 579 ~gsT~lDfAy~i---h~~----ig~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
.|+|+.|+--.+ |+. +...-+..-||++.++++++|++||.|.|+.
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 367877764443 221 1112234668999999999999999999985
No 202
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=71.00 E-value=3.6 Score=47.33 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=47.1
Q ss_pred ceEeecC--C-CceEecCCCCcHhHHHHhcccccccceEEEEE-----------------CCE--ecCCCccCCCCCeEE
Q 002745 564 RVFVFTP--R-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVE 621 (885)
Q Consensus 564 ~V~VftP--~-G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akv-----------------NG~--~v~l~~~L~~gd~Ve 621 (885)
-++-||- + =+.+.+++|+|+.+.|-.||||+-+..+.|.| -|+ +-.-+|.+++||++.
T Consensus 284 L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~ 363 (368)
T TIGR00092 284 LSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLF 363 (368)
T ss_pred eeEEEcCCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEE
Confidence 3445552 3 26899999999999999999999999999988 111 223378899999998
Q ss_pred EEe
Q 002745 622 IIT 624 (885)
Q Consensus 622 Iit 624 (885)
+-.
T Consensus 364 f~f 366 (368)
T TIGR00092 364 FAF 366 (368)
T ss_pred Eec
Confidence 854
No 203
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.34 E-value=18 Score=30.02 Aligned_cols=49 Identities=22% Similarity=0.241 Sum_probs=36.7
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
.+++|+++.|.+.|++.++++..++.... ...+.|+|. .|...+.+++.
T Consensus 12 ~~~~~~~~~i~~~L~~~~i~v~~i~~~~s----~~~isf~v~~~d~~~~~~~lh 61 (66)
T cd04916 12 KNTVGVSARATAALAKAGINIRMINQGSS----EISIMIGVHNEDADKAVKAIY 61 (66)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEecCc----ccEEEEEEeHHHHHHHHHHHH
Confidence 36799999999999999999988864321 145778888 66666655544
No 204
>PRK09169 hypothetical protein; Validated
Probab=69.85 E-value=29 Score=47.92 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=75.8
Q ss_pred EEEEecChHHHHHHHH----hcCCCC----CccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-cCCcccccc
Q 002745 373 IRSVCKEPYSIYKAVL----KSRGSI----NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAM 443 (885)
Q Consensus 373 V~gR~K~~ySI~~Km~----rk~~~~----~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~-~~~pip~r~ 443 (885)
...|.|+.-|+.+|+. +++.++ ..|+|.+-.=|+.++. .+...+..+++.+-. -|+-+ ++
T Consensus 1916 le~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~---------~Fva~~r~iv~~L~~~G~~~V--kv 1984 (2316)
T PRK09169 1916 LAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQ---------TFVAGYRRILGALDEQGHTRT--RV 1984 (2316)
T ss_pred hHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCc---------cHHHHHHHHHHHHHhCCCeEE--EE
Confidence 4569999999999986 556554 5778855444454432 477889999988754 46655 44
Q ss_pred cccccCCCCCCccceeEEE-eccCCccceeEEEEEechhHHHHHHHhHHhhccCCcc
Q 002745 444 KDYIATPKPNGYQSLHTTL-IPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (885)
Q Consensus 444 kDyIa~PK~NGYqSLHttV-~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~~ 499 (885)
+.+-.. ..++|..+|+++ .+. ++..+|||-=|.+--..-+. -|=.||+.
T Consensus 1985 ~N~F~~-~~~~YkGVNv~l~~s~---~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1985 TNHFKK-RGPAFKGINVTLDATG---EGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred Eeeecc-CCCCccceEEeeecCC---CCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 543322 249999999999 433 34799999999877666553 56678864
No 205
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.70 E-value=14 Score=30.85 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=36.0
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
.+++|++++|.++|++.++||..+...+ . ...+.|.|. .+.+.+.+.+.
T Consensus 12 ~~~~~~~~~if~~L~~~~I~v~~i~q~~-s---~~~isf~v~~~~~~~a~~~lh 61 (66)
T cd04919 12 KNMIGIAGRMFTTLADHRINIEMISQGA-S---EINISCVIDEKDAVKALNIIH 61 (66)
T ss_pred CCCcCHHHHHHHHHHHCCCCEEEEEecC-c---cceEEEEEeHHHHHHHHHHHH
Confidence 3689999999999999999998885432 1 266788888 66555544443
No 206
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=67.72 E-value=5.6 Score=40.91 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 864 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV 864 (885)
-|.+.+.||||++..|+.++++.|.|+..-....-.+.-.++|.+... .++..|+..+..+.+-.|.
T Consensus 7 vItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 7 VITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred EEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCe
Confidence 488899999999999999999999999665543221112244555555 5666666666666553333
No 207
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.71 E-value=14 Score=33.11 Aligned_cols=52 Identities=13% Similarity=0.331 Sum_probs=38.9
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCH-------HHHHHHHHHhcc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNL-------ESLVNACSSVDL 860 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~-------e~L~rll~kI~~ 860 (885)
..+.+|.+++|.+++++.++||.-+.+. . ..+.|+|. .+. +.|..+...+++
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~qs---~---~sISftV~~sd~~~~~~~~~~l~~~~~~~~~ 70 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVATS---E---VSISLTLDPSKLWSRELIQQELDHVVEELEK 70 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEEec---C---CEEEEEEEhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4678999999999999999999999642 1 55889999 665 445555555443
No 208
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=67.47 E-value=5.1 Score=42.89 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=29.3
Q ss_pred cCCcccchHHHHHHHHH----HcCCCHHH-HHHHhhccccc
Q 002745 167 SGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVE 202 (885)
Q Consensus 167 sGePYi~Hpl~VA~iLa----~l~~D~~t-I~AALLHDvvE 202 (885)
+|..-+.|.++||.+.. +.|.|.+. ..||||||+.-
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~ 73 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGK 73 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcc
Confidence 66777999999998753 56888875 78999999874
No 209
>PRK14707 hypothetical protein; Provisional
Probab=67.02 E-value=38 Score=46.50 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=73.6
Q ss_pred cChHHHHHHHHhc---CCC----CCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhc-cCCcccccccccccC
Q 002745 378 KEPYSIYKAVLKS---RGS----INEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHG-IWTPIPRAMKDYIAT 449 (885)
Q Consensus 378 K~~ySI~~Km~rk---~~~----~~ei~Di~g~RIIV~~~~~~~~~~~~~~~~dCY~vLg~Ih~-~~~pip~r~kDyIa~ 449 (885)
|++.||.+|+.+. +++ +..|.|.+-.=||++. ..++...+.+...+.. -|+.+ ++|.+-..
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~---------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~ 2612 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS---------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTS 2612 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc---------chHHHHHHHHHHHHHhcCCeEE--EeeccccC
Confidence 9999999999653 343 4678886655555543 4578888888887754 47766 78887755
Q ss_pred CCCCCccceeEEEeccCCccceeEEEEEechhHHHHHHHhHHhhccCCc
Q 002745 450 PKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (885)
Q Consensus 450 PK~NGYqSLHttV~~~~~~~~~~vEIQIRT~~Mh~~AE~Giaahw~yK~ 498 (885)
| .+.|..+-+++.... +..||||-=|.+--..-+. .|=.|+.
T Consensus 2613 ~-d~tY~GvN~~~r~~~---g~~FEIQFHT~~Sf~~K~~---tH~lYek 2654 (2710)
T PRK14707 2613 G-DGTYRGINASFTDAE---GYAFEVQFHTAESFNAKAQ---THLSYKR 2654 (2710)
T ss_pred C-CCcccceeeeEEcCC---CCeEEEEeccHHHHHHHHH---hHHHHHh
Confidence 5 378999999996433 3589999999876555443 4556654
No 210
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=66.94 E-value=26 Score=29.72 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHH-hccccCeeeccc
Q 002745 808 GIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS-VDLILGVLGWST 869 (885)
Q Consensus 808 GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~k-I~~V~gV~~V~~ 869 (885)
.-+.++...|++. -+|..+..-+ |.+.+.+.+. .|.++|..++.. |.+++||.++.+
T Consensus 10 ~~~~~~~~~l~~~-p~V~~~~~vt----G~~d~~~~v~~~d~~~l~~~i~~~l~~~~gV~~~~t 68 (74)
T PF01037_consen 10 DAYDEFAEALAEI-PEVVECYSVT----GEYDLILKVRARDMEELEEFIREKLRSIPGVRRTET 68 (74)
T ss_dssp THHHHHHHHHHTS-TTEEEEEEES----SSSSEEEEEEESSHHHHHHHHHHTHHTSTTEEEEEE
T ss_pred chHHHHHHHHHcC-CCEEEEEEEe----CCCCEEEEEEECCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 4588888888865 4566776542 2344555666 799999999999 999999998764
No 211
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=64.53 E-value=6.2 Score=40.24 Aligned_cols=46 Identities=33% Similarity=0.436 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCcccCCccc--chHHHHHHHHHHcCCCHHHHHHHhhccc
Q 002745 152 ALMLAFEAHDGQKRRSGEPFI--IHPVEVARILGELELDWESIAAGLLHDT 200 (885)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi--~Hpl~VA~iLa~l~~D~~tI~AALLHDv 200 (885)
++.|. .|..+- .+|+|-- .|.++.|.....-|.|.+.|+||||||+
T Consensus 13 ~~~F~--~~g~e~-y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 13 AYLFL--RHGDEG-YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred HHHHH--Hccccc-cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 45555 344443 4788764 7999999877778999999999999985
No 212
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=63.09 E-value=22 Score=30.51 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=35.3
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
.++|+++++.++|++.++|+..++... .-..+.|-|. .|.+...+.+.
T Consensus 13 ~~~gv~~ki~~~L~~~~I~v~~i~~~~----s~~~is~~V~~~~~~~av~~Lh 61 (66)
T cd04915 13 STPGVLARGLAALAEAGIEPIAAHQSM----RNVDVQFVVDRDDYDNAIKALH 61 (66)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEEecC----CeeEEEEEEEHHHHHHHHHHHH
Confidence 368999999999999999998886542 2245677777 66666555543
No 213
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.34 E-value=34 Score=30.84 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=48.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLI 861 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V 861 (885)
-+.|+.-.|||.|.+..+.|.. +-||+..+-... +...+.+.+-|+ .+. ++..++++|++.
T Consensus 3 ~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~-~~~~a~vlvGi~~~~~-~~~~l~~~l~~~ 64 (81)
T cd04907 3 LFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQ-GSDYGRVLVGIQVPDA-DLDELKERLDAL 64 (81)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecC-CCCceeEEEEEEeChH-HHHHHHHHHHHc
Confidence 3678888999999999999953 789999887643 345688888888 655 888888888764
No 214
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=62.29 E-value=41 Score=31.12 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=53.8
Q ss_pred EEEEEEeccccHHHHHHHHHHhC--CcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCee
Q 002745 798 WFSVVCIDRRGIMADVTTALATV--GVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVL 865 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~--~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~ 865 (885)
.+.|.+..++++--+|-.++... +--.-.++++...+++.....++|- .|.+||+.+=..|++++.|.
T Consensus 17 ~~KVmG~a~~~l~~~vv~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~~~~~Vk 87 (90)
T COG2921 17 TYKVMGAAGPELEDQVVEVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYRELRKHEIVK 87 (90)
T ss_pred eeeehcccchhHHHHHHHHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHHhhCCceE
Confidence 68999999999999999999864 4444555555433345556777777 89999999999999999985
No 215
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=62.10 E-value=4.4 Score=37.31 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=25.5
Q ss_pred cccchHHHHHHHHHHcCC--------CHHHHHHHhhccccccC
Q 002745 170 PFIIHPVEVARILGELEL--------DWESIAAGLLHDTVEDT 204 (885)
Q Consensus 170 PYi~Hpl~VA~iLa~l~~--------D~~tI~AALLHDvvEDT 204 (885)
+.+.|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999988765421 23568999999998643
No 216
>PRK06635 aspartate kinase; Reviewed
Probab=60.24 E-value=19 Score=41.62 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=42.0
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHh
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSV 858 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI 858 (885)
..+++|.+++|.++|++.++||..++.... .++...+.|.|. .+.+...+++.++
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~-~~~~~~is~~v~~~~~~~a~~~L~~~ 325 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVS-EDGKTDITFTVPRDDLEKALELLEEV 325 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCC-CCCceeEEEEEcHHHHHHHHHHHHHH
Confidence 578999999999999999999998865422 223577888887 6666666666664
No 217
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=59.24 E-value=4.2 Score=44.55 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=46.4
Q ss_pred ceEeec-CCCc------eEecCC-CCcHhHHHHhcccccccceEEE-------EECCEecCCCccCCCCCeEEEEe
Q 002745 564 RVFVFT-PRGE------IKNLPK-GATVVDYAYMIHTEIGNKMVAA-------KVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 564 ~V~Vft-P~G~------i~~lp~-gsT~lDfAy~ih~~ig~~~~~a-------kvNG~~v~l~~~L~~gd~VeIit 624 (885)
-+.+|| |+|. ..-|.. -.|+.||--.||..+-....-| +-|.+.|.+++.|.+.|+|.|+.
T Consensus 282 LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivk 357 (358)
T KOG1487|consen 282 LVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVK 357 (358)
T ss_pred heEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhcc
Confidence 455777 7774 333444 4599999999999987765544 44888999999999999999974
No 218
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=59.00 E-value=36 Score=40.07 Aligned_cols=67 Identities=9% Similarity=-0.081 Sum_probs=49.1
Q ss_pred EEEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeeecCC----cEEEEEEEEEcCHHHHHHHHHHhccccCe
Q 002745 798 WFSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGR----GIAVMLFHVEGNLESLVNACSSVDLILGV 864 (885)
Q Consensus 798 ~I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~----~~a~m~f~IE~d~e~L~rll~kI~~V~gV 864 (885)
.+.+...++ .|-|+++-.++.+.++||..+.+...+.. ....+.++++.+..+|..++..|++...+
T Consensus 39 ~~~~~~~~~~~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 110 (457)
T TIGR01269 39 NNQFYIRTKEISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLEANEINMSLLIESLRGNSFI 110 (457)
T ss_pred eEEEEeccCcchhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEeccHhhHHHHHHHHHhhhcc
Confidence 344444444 99999999999999999999998764322 23555566666668899999999986543
No 219
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=58.60 E-value=11 Score=31.47 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEEECCEec-CCCccCCCCCeEEE
Q 002745 600 AAKVNGNLV-SPTHVLANAEVVEI 622 (885)
Q Consensus 600 ~akvNG~~v-~l~~~L~~gd~VeI 622 (885)
..+|||+.+ ..++.|+.||.|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 567999998 77999999999986
No 220
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=56.90 E-value=11 Score=41.16 Aligned_cols=52 Identities=33% Similarity=0.399 Sum_probs=45.1
Q ss_pred ceEecCCCCcHhHHHHhcccccccceEEEEECC-------EecCCCccCCCCCeEEEEe
Q 002745 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-------NLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 573 ~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG-------~~v~l~~~L~~gd~VeIit 624 (885)
+.+.|.+|+|+-|+--+||..+.....-|.|=| +.|.|.+.+.+.|+|.|+.
T Consensus 305 d~~vlr~g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~ 363 (364)
T KOG1486|consen 305 DPLVLRKGSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVK 363 (364)
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeec
Confidence 678888999999999999999988877666644 6889999999999999863
No 221
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.45 E-value=36 Score=28.83 Aligned_cols=47 Identities=19% Similarity=0.115 Sum_probs=33.9
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 855 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll 855 (885)
..+|+++++.++|++.++||..+.-.+ .-..+.|.|. .|.+.+.+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~----s~~sis~~v~~~~~~~av~~L 59 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGA----SKVNISLIVNDSEAEGCVQAL 59 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC----ccceEEEEEeHHHHHHHHHHH
Confidence 468999999999999999998886332 2245677777 6665554444
No 222
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=54.33 E-value=21 Score=32.86 Aligned_cols=65 Identities=20% Similarity=0.223 Sum_probs=49.9
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcccc
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLIL 862 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~ 862 (885)
.+-+.|+.-.|||.|....++|.... ||+..+-... +...+.+.+-|+ .+.+++..++++|++..
T Consensus 10 E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~-~~~~a~vlvgi~v~~~~~~~~l~~~L~~~g 75 (91)
T PF00585_consen 10 EALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYS-GDDFARVLVGIEVPDAEDLEELIERLKALG 75 (91)
T ss_dssp EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-T-TTSCSEEEEEEE-SSTHHHHHHHHHHTSSS
T ss_pred EEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCC-CCCeeeEEEEEEeCCHHHHHHHHHHHHHcC
Confidence 45688999999999999999997543 5888887643 446788888888 88888999999998764
No 223
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=53.30 E-value=25 Score=32.65 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=32.9
Q ss_pred CCCcHhHHHHhc---ccccc----------cceEEEEECCEec----CCCccCCCCCeEEEEe
Q 002745 579 KGATVVDYAYMI---HTEIG----------NKMVAAKVNGNLV----SPTHVLANAEVVEIIT 624 (885)
Q Consensus 579 ~gsT~lDfAy~i---h~~ig----------~~~~~akvNG~~v----~l~~~L~~gd~VeIit 624 (885)
.|+|+.|+--.+ |+... +.-+-..|||+.+ .++++|++||.|.|+.
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC
Confidence 578888864443 32221 1246788999987 4789999999999986
No 224
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=53.09 E-value=47 Score=28.78 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=35.0
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHH
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNA 854 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rl 854 (885)
..+++|++++|.++|++.++++..++.... . ..+.|++. .+..++.+.
T Consensus 11 ~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~-~---~~isf~v~~~d~~~~~~~ 59 (80)
T cd04921 11 MVGVPGIAARIFSALARAGINVILISQASS-E---HSISFVVDESDADKALEA 59 (80)
T ss_pred CCCCccHHHHHHHHHHHCCCcEEEEEecCC-c---ceEEEEEeHHHHHHHHHH
Confidence 347889999999999999999988865322 1 35678888 665554444
No 225
>smart00363 S4 S4 RNA-binding domain.
Probab=52.92 E-value=13 Score=29.45 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.6
Q ss_pred EEEECCEec-CCCccCCCCCeEEEEe
Q 002745 600 AAKVNGNLV-SPTHVLANAEVVEIIT 624 (885)
Q Consensus 600 ~akvNG~~v-~l~~~L~~gd~VeIit 624 (885)
+.+|||+.+ ..++.|..||.|++--
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~~ 52 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEcc
Confidence 578999999 8899999999998743
No 226
>PRK01002 nickel responsive regulator; Provisional
Probab=52.65 E-value=1.2e+02 Score=30.28 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=58.5
Q ss_pred ccCCCC-CceeEEEEEEEecc--ccHHHHHHHHHHhCCcceeee-EEeeecCCcEEEEEEEEEcCHHHHHHHHHHhcccc
Q 002745 787 TWHNLE-GHSIQWFSVVCIDR--RGIMADVTTALATVGVTICSC-VAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLIL 862 (885)
Q Consensus 787 ~W~~~~-~~~~~~I~V~a~DR--~GlLadItsvIa~~~iNI~sv-~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~ 862 (885)
.|.... +.-...|.| +.|. .++-..++++..+..-.|.+- .+.- +.+.....|.|+++.+.+..+.++|..++
T Consensus 47 ~~~~~~~~~~~GvIti-vydh~~~~l~~~l~~iqH~~~~~Iiss~Hvhl--d~~~ClEvivv~G~~~~I~~l~~kL~~lk 123 (141)
T PRK01002 47 KWMNSMEGERVGTISV-IYDHHSTGVMEKLTDIQHDYSDLIVASLHIHL--DHDHCLEVIVVRGDAKEIRELTEKLMALK 123 (141)
T ss_pred hhccCCCCcEEEEEEE-EEeccchhHHHHHHHHHHhccCeEEEeeeeec--CCCcEEEEEEEEcCHHHHHHHHHHHhCcC
Confidence 675442 332444555 5665 478899999998876555443 3332 33456666777799999999999999999
Q ss_pred Ceeecccccc
Q 002745 863 GVLGWSTGCS 872 (885)
Q Consensus 863 gV~~V~~g~~ 872 (885)
||..++.-+.
T Consensus 124 GV~~~kl~~~ 133 (141)
T PRK01002 124 GVKHVKLTTM 133 (141)
T ss_pred CeeEEEEEEe
Confidence 9999887665
No 227
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.61 E-value=40 Score=28.53 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
+.+|+++++.++|++.++++.+..+. ...+.|-|. .|.+.+.+.+.
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s------~~~is~vv~~~d~~~av~~LH 58 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN------DLNLTFVVDEDQADGLCARLH 58 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC------CCeEEEEEeHHHHHHHHHHHH
Confidence 78999999999999887777555432 244777777 66666555543
No 228
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=52.10 E-value=57 Score=30.46 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=45.2
Q ss_pred EEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 802 VCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 802 ~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
...=+|-.|.+|-+.|... -.+.+...+. . ..+-+.|| .+.+.|-.-|..|+.++||+.|+-
T Consensus 12 Vv~~~pe~l~av~~~L~~i----p~~EV~~~d~-~-GKlVVVie~~~~~~l~~tie~i~nl~gVlav~l 74 (94)
T COG3062 12 VVQAKPERLSAVKTALLAI----PGCEVYGEDA-E-GKLVVVIEAEDSETLLETIESIRNLPGVLAVSL 74 (94)
T ss_pred eeecCHHHHHHHHHHHhcC----CCcEeeccCC-C-ceEEEEEEcCchHHHHHHHHHHhcCCceeEEEE
Confidence 4456788888898888753 2333322211 1 45677888 899999999999999999999864
No 229
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=52.01 E-value=50 Score=32.04 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=48.9
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeee-cCCcEEEEEEEEE--cCHHHHHHHHHHhccccCeeecc
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEID-RGRGIAVMLFHVE--GNLESLVNACSSVDLILGVLGWS 868 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~-~~~~~a~m~f~IE--~d~e~L~rll~kI~~V~gV~~V~ 868 (885)
.+-+.+|.+|...-...|+.+.+++-... ........-|+|+ ++..+|...+..|.+.+.++.|.
T Consensus 50 ~~~~~ll~~l~~~A~~~gv~l~~~~p~~~~~~~~~~~~pv~i~l~G~Y~~l~~Fl~~l~~l~riv~i~ 117 (144)
T PF04350_consen 50 EEIPSLLEDLNRLAKKSGVKLTSFEPGEEEKKEFYIEIPVTISLEGSYHQLLNFLNDLENLPRIVNIE 117 (144)
T ss_dssp GHHHHHHHHHHHHHHHTT-EEEEEEE---EE-SSEEEEEEEEEEEEEHHHHHHHHHHHHTSSS-EEEE
T ss_pred hhHHHHHHHHHHHHHHCCCeEEEeecCcccccCceEEEEEEEEEEeeHHHHHHHHHHHHcCCCeEEEe
Confidence 46678999999999999999999986532 2345666666666 99999999999999999988664
No 230
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=51.55 E-value=11 Score=33.85 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=35.0
Q ss_pred eecCCCceEecCCCCcHhHHHHhcccccccc------------------eEEEEECCEe-cCC-CccCCCCCeEEE
Q 002745 567 VFTPRGEIKNLPKGATVVDYAYMIHTEIGNK------------------MVAAKVNGNL-VSP-THVLANAEVVEI 622 (885)
Q Consensus 567 VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~------------------~~~akvNG~~-v~l-~~~L~~gd~VeI 622 (885)
-|+=||+.++.++|.|.++++.+.+..+-+. | -+.|||+. +.- .+++++|.+|+-
T Consensus 5 ~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C-~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 5 TITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLC-LVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS--EEEESSEEEEETTT-B--TTEEEE-
T ss_pred EEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceE-EEEECCCcceEcccCCCcCCcEEEE
Confidence 4566899999999999999998865443221 3 47889987 432 346899988763
No 231
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=49.62 E-value=31 Score=29.38 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=40.9
Q ss_pred CCceEecCCCCcHhHHHHhcccccccceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
+|+.++...++|+-++.-.+.+ .+--.-+||=...-+.+|++||.|-.|-
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~----~~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP----DADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC----CCCEEEEcCcccCCccccCCCCEEEEEe
Confidence 6789999999999777655544 4545678999999999999999998874
No 232
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=49.55 E-value=17 Score=30.92 Aligned_cols=33 Identities=39% Similarity=0.539 Sum_probs=23.7
Q ss_pred CcccchHHHHHHHHH----HcCCCHH-HHHHHhhcccc
Q 002745 169 EPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (885)
Q Consensus 169 ePYi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvv 201 (885)
.+...|.+.|+.... .+++|.+ ...||||||+=
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG 40 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIG 40 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccC
Confidence 344678888887754 3567764 57899999974
No 233
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=48.74 E-value=20 Score=32.46 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=26.2
Q ss_pred cceEEEEECCEecCCCccCCCCCeEEEEe
Q 002745 596 NKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (885)
Q Consensus 596 ~~~~~akvNG~~v~l~~~L~~gd~VeIit 624 (885)
..++.+.+|...++++++|++||.|-|+.
T Consensus 51 ~~~v~~~~~~~~~~~~t~L~dGDeVa~~P 79 (84)
T COG1977 51 NIVVNAANNEFLVGLDTPLKDGDEVAFFP 79 (84)
T ss_pred cceEEeeeceeeccccccCCCCCEEEEeC
Confidence 46778889999999999999999999986
No 234
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=48.67 E-value=50 Score=38.16 Aligned_cols=73 Identities=15% Similarity=0.173 Sum_probs=47.0
Q ss_pred eEEEEEE---EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhc-ccc-Ceeeccc
Q 002745 796 IQWFSVV---CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVD-LIL-GVLGWST 869 (885)
Q Consensus 796 ~~~I~V~---a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~-~V~-gV~~V~~ 869 (885)
.+.|.|. ..+++|++++|.++|++.++||..+..... ...+.|.|. .|.+.+.+++.+.. ... ..+++..
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s----~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~ 335 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPS----ETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEE 335 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCC----CceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeC
Confidence 3446666 568899999999999999999998865311 144778887 56555555554432 111 3344554
Q ss_pred ccc
Q 002745 870 GCS 872 (885)
Q Consensus 870 g~~ 872 (885)
+|+
T Consensus 336 ~~a 338 (401)
T TIGR00656 336 GLA 338 (401)
T ss_pred CeE
Confidence 444
No 235
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=48.21 E-value=14 Score=29.37 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.1
Q ss_pred EEEECCEecC-CCccCCCCCeE
Q 002745 600 AAKVNGNLVS-PTHVLANAEVV 620 (885)
Q Consensus 600 ~akvNG~~v~-l~~~L~~gd~V 620 (885)
..+|||+.+. .+++++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 5789999999 99999999986
No 236
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=47.28 E-value=22 Score=36.45 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=36.7
Q ss_pred cccchHHHHHHHH----HHcCCCHHH-HHHHhhcccc-ccCC-------CCCHHHHHHH-hCHHHHHHHhhh
Q 002745 170 PFIIHPVEVARIL----GELELDWES-IAAGLLHDTV-EDTN-------VVTFERIEEE-FGATVRRIVEGE 227 (885)
Q Consensus 170 PYi~Hpl~VA~iL----a~l~~D~~t-I~AALLHDvv-EDT~-------~~t~e~I~~~-FG~~Va~LV~gl 227 (885)
..+-|+++|+..+ +++|-|++. -.+|||||.= |-|. ..+.+-+++. -.++|++.|.+-
T Consensus 47 ~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H 118 (212)
T COG2316 47 SLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGH 118 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHh
Confidence 4566888877665 378999886 6789999962 1121 1223334433 567787777663
No 237
>PRK00106 hypothetical protein; Provisional
Probab=45.94 E-value=18 Score=43.76 Aligned_cols=35 Identities=37% Similarity=0.524 Sum_probs=27.6
Q ss_pred cCCcccchHHHHHHHH----HHcCCCH-HHHHHHhhcccc
Q 002745 167 SGEPFIIHPVEVARIL----GELELDW-ESIAAGLLHDTV 201 (885)
Q Consensus 167 sGePYi~Hpl~VA~iL----a~l~~D~-~tI~AALLHDvv 201 (885)
.|...+.|.++||.+. ..+|+|. ..-.||||||+=
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIG 386 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMG 386 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Confidence 4667789999999875 3678885 468899999973
No 238
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=45.81 E-value=17 Score=36.55 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=24.0
Q ss_pred ccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002745 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (885)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (885)
-+.|.+.||.+.. .++.|.+ .-+||||||+=.
T Consensus 9 r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 9 RYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3679999998753 3566654 588999999854
No 239
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=45.24 E-value=85 Score=29.94 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHHhCCcc--eeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccccccC
Q 002745 806 RRGIMADVTTALATVGVT--ICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCSW 873 (885)
Q Consensus 806 R~GlLadItsvIa~~~iN--I~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~g~~~ 873 (885)
..|+|..+-..|-+.|.+ |..+++-.. .......++.|. .|.++|.+|+.+|.++.-+..-...|.+
T Consensus 14 DSgil~~vLD~I~d~GG~F~i~~~~vG~~-~~d~S~a~l~V~a~d~~~L~~Il~~L~~lga~~~~~~d~~l 83 (103)
T PF04455_consen 14 DSGILNRVLDIIMDMGGDFEILEFDVGKS-KDDTSYARLQVSAPDEEHLDEILDELHQLGAVPVEPQDAEL 83 (103)
T ss_dssp TSSHHHHHHHHHHHTT-EEEEEEEE--SS-TTS-EEEEEEEEESSHHHHHHHHHHHHHHHHHSCCCCEEEE
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEEeCCC-CCCceeEEEEEecCCHHHHHHHHHHHHHHcCCCCCCcccEE
Confidence 369999999999887755 566666533 346677888888 8999999999999977555333333333
No 240
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=45.15 E-value=31 Score=37.03 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=40.3
Q ss_pred ecCCCceEecCCCCcHhHHHHhcccccccceE-------------EEEECCEe--c-CCCccCCCCCeEEE
Q 002745 568 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV-------------AAKVNGNL--V-SPTHVLANAEVVEI 622 (885)
Q Consensus 568 ftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~-------------~akvNG~~--v-~l~~~L~~gd~VeI 622 (885)
++-||+.+.+|+|.|.+|.|.+.+-.+-..|. -++|||+. + .=.+++++|..|+-
T Consensus 6 i~idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t 76 (234)
T PRK07569 6 LTIDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQT 76 (234)
T ss_pred EEECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEE
Confidence 34599999999999999999887655544332 46888853 2 55667888887764
No 241
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=43.73 E-value=50 Score=38.10 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002745 797 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 857 (885)
Q Consensus 797 ~~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~k 857 (885)
+.|.|.+ .+++|+++++.++|++.++||..+.+. ...+.|-|. .|.+...+.+.+
T Consensus 338 a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~~s------~~~is~vv~~~d~~~av~~Lh~ 396 (401)
T TIGR00656 338 AKVSIVGAGMVGAPGVASEIFSALEEKNINILMIGSS------ETNISFLVDEKDAEKAVRKLHE 396 (401)
T ss_pred EEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcC------CCEEEEEEeHHHHHHHHHHHHH
Confidence 3455554 589999999999999999999977522 234667777 677666666554
No 242
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=43.70 E-value=61 Score=36.66 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=44.4
Q ss_pred CCCChHHHHHhhhhhhcCCChhhHHHHHHHH-H-----H-----HHHhhcCCCcccCCcccchHHHHHHHHHHc-----C
Q 002745 123 KEDSPERLWEDLRPTISYLSPNELELVRRAL-M-----L-----AFEAHDGQKRRSGEPFIIHPVEVARILGEL-----E 186 (885)
Q Consensus 123 ~~~~~~~~~~~~~~~~~y~~~~~~~~l~~A~-~-----~-----A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l-----~ 186 (885)
..++.++++..|...+.-.....+..+-+++ . | |...|..- .+| .+.|-+.|+.+...+ .
T Consensus 105 s~~~~e~l~~el~~~i~~i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHay--~GG--LleHtl~v~~~~~~l~~~y~~ 180 (314)
T PRK13480 105 APLSKEEMQEEITQYIFEMENPNIQRITRHLLKKYQEEFLDYPAATKNHHEF--VSG--LAYHVVSMLRLAKSICDLYPS 180 (314)
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCChHhhccccc--ccH--HHHHHHHHHHHHHHHHHhccc
Confidence 3456788888888877555555544433322 1 1 11122211 122 368999999987654 4
Q ss_pred CCHH-HHHHHhhccc
Q 002745 187 LDWE-SIAAGLLHDT 200 (885)
Q Consensus 187 ~D~~-tI~AALLHDv 200 (885)
+|.+ .+++|||||+
T Consensus 181 ~n~dll~agalLHDi 195 (314)
T PRK13480 181 LNKDLLYAGIILHDL 195 (314)
T ss_pred cCHHHHHHHHHHHHh
Confidence 6777 5888999996
No 243
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=43.60 E-value=23 Score=36.06 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=34.4
Q ss_pred CcccchHHHHHHHHH----HcC-----CCHH-HHHHHhhccccccCC------CCCHHHHHHH--hCHHHHHHHhh
Q 002745 169 EPFIIHPVEVARILG----ELE-----LDWE-SIAAGLLHDTVEDTN------VVTFERIEEE--FGATVRRIVEG 226 (885)
Q Consensus 169 ePYi~Hpl~VA~iLa----~l~-----~D~~-tI~AALLHDvvEDT~------~~t~e~I~~~--FG~~Va~LV~g 226 (885)
+..+.|.+.|+.+.. .++ .|.+ ..+||||||+=.... .... ++.+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~-~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGA-EILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHH-HHHHHcCCCHHHHHHHHH
Confidence 345689999998742 344 4544 588999999853211 0112 23333 45678888754
No 244
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=42.23 E-value=22 Score=37.20 Aligned_cols=35 Identities=34% Similarity=0.343 Sum_probs=27.0
Q ss_pred ccchHHHHHHHHHH----cCCCHH-HHHHHhhccccccCC
Q 002745 171 FIIHPVEVARILGE----LELDWE-SIAAGLLHDTVEDTN 205 (885)
Q Consensus 171 Yi~Hpl~VA~iLa~----l~~D~~-tI~AALLHDvvEDT~ 205 (885)
-+.|.+.||....+ +++|.+ +-+||+|||.--+-+
T Consensus 18 R~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 18 RFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 37899999987543 578775 588999999876544
No 245
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=40.51 E-value=14 Score=43.35 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHh----hcCCCcccCCcccchHHHHHHHHHHc----CC--CH--------HHHHHHhhccc
Q 002745 144 NELELVRRALMLAFEA----HDGQKRRSGEPFIIHPVEVARILGEL----EL--DW--------ESIAAGLLHDT 200 (885)
Q Consensus 144 ~~~~~l~~A~~~A~~a----H~gQ~RksGePYi~Hpl~VA~iLa~l----~~--D~--------~tI~AALLHDv 200 (885)
.+.++|+.--++.... ++.-+| +.|.+.|..+...+ +. +. .+.+||||||+
T Consensus 27 ~~FQRLRrIkQLG~a~lvyPgAnHTR------FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 27 PEFQRLRRIKQLGLAYLVYPGANHTR------FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred HHHHHHHHhhhccceeEecCCCcccc------cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 4666777665555442 122234 78999999887543 21 11 37899999997
No 246
>PRK08210 aspartate kinase I; Reviewed
Probab=40.39 E-value=73 Score=36.91 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=40.1
Q ss_pred EEEEEEecc-ccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHh
Q 002745 798 WFSVVCIDR-RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSV 858 (885)
Q Consensus 798 ~I~V~a~DR-~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI 858 (885)
.|.|...+. +|.+++|.++|++.++||..+... . ..+.|++. .+.+.+..++.++
T Consensus 273 ~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~-~-----~~is~~v~~~~~~~a~~~l~~~ 329 (403)
T PRK08210 273 QIKVKAKENAYDLQQEVFKALAEAGISVDFINIF-P-----TEVVFTVSDEDSEKAKEILENL 329 (403)
T ss_pred EEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec-C-----ceEEEEEcHHHHHHHHHHHHHh
Confidence 455555444 999999999999999999998543 1 13667777 6667776666664
No 247
>PF10741 T2SM_b: Type II secretion system (T2SS), protein M subtype b; InterPro: IPR007690 General secretion pathway (GSP) protein M is a membrane protein involved in the export of proteins in bacteria. It consists of a short cytosolic N-terminal domain, a transmembrane domain, and a C-terminal periplasmic domain. The precise function of this protein is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers [],; GO: 0006858 extracellular transport
Probab=39.96 E-value=97 Score=29.21 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHHhCCcceeeeEEeeecC-CcEE--EEEEEEEcCHHHHHHHHHHhcccc
Q 002745 807 RGIMADVTTALATVGVTICSCVAEIDRG-RGIA--VMLFHVEGNLESLVNACSSVDLIL 862 (885)
Q Consensus 807 ~GlLadItsvIa~~~iNI~sv~~~~~~~-~~~a--~m~f~IE~d~e~L~rll~kI~~V~ 862 (885)
..+...|..++++.|++|.+.+...... .+.. .+.++++.+.++|.+++..|..-.
T Consensus 16 A~Lq~~l~~~v~~aG~~v~s~q~~p~~~~~~~~~i~v~~~~~g~~~~L~~~L~~LE~~~ 74 (110)
T PF10741_consen 16 AALQQRLRALVAAAGGQVSSSQVLPPRPDGNFRRISVRVSLEGDIEALQAFLYALESGR 74 (110)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCCCcceEEEEEEEEEeCHHHHHHHHHHHhcCC
Confidence 3577888889999999999998865322 2344 445555599999999999998654
No 248
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=39.64 E-value=19 Score=30.37 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.4
Q ss_pred EEEECCEecCC--CccCCCCCeEEE
Q 002745 600 AAKVNGNLVSP--THVLANAEVVEI 622 (885)
Q Consensus 600 ~akvNG~~v~l--~~~L~~gd~VeI 622 (885)
+..|||+.+.. .++|++||+|.|
T Consensus 43 gt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEESSTSEEEE-TTEEEEE
T ss_pred cEEECCEEcCCCCEEECCCCCEEEc
Confidence 78899999998 557999999986
No 249
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.17 E-value=1.1e+02 Score=25.55 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=29.6
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
+++|+++++.++|++ ++|.-++.. .....+.|-|. .|.+.+.+.+.
T Consensus 13 ~~~~v~~~i~~~L~~--i~i~~i~~~----~s~~~is~~V~~~~~~~a~~~Lh 59 (64)
T cd04917 13 ETAGVEKRIFDALED--INVRMICYG----ASNHNLCFLVKEEDKDEVVQRLH 59 (64)
T ss_pred CCcCHHHHHHHHHHh--CCeEEEEEe----cCccEEEEEEeHHHHHHHHHHHH
Confidence 789999999999975 555444322 12345677777 66655555443
No 250
>PRK06635 aspartate kinase; Reviewed
Probab=38.77 E-value=66 Score=37.18 Aligned_cols=53 Identities=26% Similarity=0.215 Sum_probs=38.6
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHH
Q 002745 797 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC 855 (885)
Q Consensus 797 ~~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll 855 (885)
+.+.|.+ .|++|++++|.++|++.++||..+... ...+.|.|. .|.+...+++
T Consensus 341 a~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ss------~~~is~vv~~~d~~~a~~~L 397 (404)
T PRK06635 341 AKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTS------EIKISVLIDEKYLELAVRAL 397 (404)
T ss_pred EEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEec------CCeEEEEEcHHHHHHHHHHH
Confidence 3455543 689999999999999999999888632 144677777 6665554444
No 251
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=38.58 E-value=95 Score=26.26 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=43.3
Q ss_pred ceEeecCCCc--eEecCCCCcHhHHHHhcccccccc--eEEEEECCEecCCCcc-----CCCCCeEEEEe
Q 002745 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (885)
Q Consensus 564 ~V~VftP~G~--i~~lp~gsT~lDfAy~ih~~ig~~--~~~akvNG~~v~l~~~-----L~~gd~VeIit 624 (885)
.|+|-+++|+ .+.++...|+.|+-..|+...|-. -..-..+|+...-+.. +++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 4788899886 466778899999988887665532 2244457877665444 68888888763
No 252
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=38.17 E-value=79 Score=27.07 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=44.5
Q ss_pred ceEeecCCCce--EecCCCCcHhHHHHhcccccccce--EEEEECCEecCCCc-----cCCCCCeEEEEec
Q 002745 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (885)
Q Consensus 564 ~V~VftP~G~i--~~lp~gsT~lDfAy~ih~~ig~~~--~~akvNG~~v~l~~-----~L~~gd~VeIit~ 625 (885)
.|+|-+++|+. ++++...|+.++-..|+...|-.. ..-..+|+...-+. -+++|++|.++-.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 47888999876 557888999999888877665432 23445777655443 4799999998764
No 253
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=38.07 E-value=33 Score=32.48 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred EEEECCEecCCCccCCCCCeEEEEecC
Q 002745 600 AAKVNGNLVSPTHVLANAEVVEIITYN 626 (885)
Q Consensus 600 ~akvNG~~v~l~~~L~~gd~VeIit~~ 626 (885)
..+|||+.+-.++.++.||+|+|-...
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCC
Confidence 467999999999999999999997653
No 254
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=37.80 E-value=34 Score=27.82 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.2
Q ss_pred EEEECCEec-CCCccCCCCCeEEEE
Q 002745 600 AAKVNGNLV-SPTHVLANAEVVEII 623 (885)
Q Consensus 600 ~akvNG~~v-~l~~~L~~gd~VeIi 623 (885)
+.+|||+.+ ..++++..||+|.+.
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~ 51 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVD 51 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEc
Confidence 678999999 889999999998875
No 255
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=37.37 E-value=1e+02 Score=30.81 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccccccCCC
Q 002745 806 RRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTGCSWPS 875 (885)
Q Consensus 806 R~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~g~~~~~ 875 (885)
..-+-..|...|++.+.+...+++... +|.+++.=.+. +.++..++......|+||.+|..+=.+..
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~i~V~v~--~G~v~l~G~v~-s~~~~~~~~~aa~~v~GV~~V~d~l~v~~ 90 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDADVNVQVE--DGKATVSGDAA-SQEAKEKILLAVGNIQGIASVDDQVKVAT 90 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCCceEEEe--CCEEEEEEEeC-CHHHHHHHHHHhccCCCcceecccceecc
Confidence 355667888999999999988887754 36777777777 99999999999999999999997766643
No 256
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=36.65 E-value=86 Score=27.83 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=39.2
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhcc
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDL 860 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~ 860 (885)
..+.|.-+.|..+|++.+++|.+..+. --.++.-+..+.+.+.|++..|++
T Consensus 12 vG~~g~d~~i~~~l~~~~v~ii~K~~n------ANtit~yl~~~~k~~~r~~~~Le~ 62 (71)
T cd04910 12 VGEVGYDLEILELLQRFKVSIIAKDTN------ANTITHYLAGSLKTIKRLTEDLEN 62 (71)
T ss_pred cCChhHHHHHHHHHHHcCCeEEEEecC------CCeEEEEEEcCHHHHHHHHHHHHH
Confidence 356788999999999999999887432 123555566788899999999953
No 257
>PRK10119 putative hydrolase; Provisional
Probab=36.45 E-value=64 Score=34.92 Aligned_cols=52 Identities=19% Similarity=0.084 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002745 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (885)
Q Consensus 148 ~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (885)
.+.++..|..+...+. . +| -=+.|-.+|..... .-+.|.+ ..+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~-~-~~-HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ-D-AA-HDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC-C-Cc-cChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3455666666644432 1 22 12568888775443 3366665 478999999973
No 258
>PRK07431 aspartate kinase; Provisional
Probab=36.17 E-value=63 Score=39.45 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=42.4
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVD 859 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~ 859 (885)
..+++|++++|.+.|++.++||..+...... .+...+.|+|. .|.+....++.+++
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~-~~~~~isf~i~~~d~~~~~~~l~~l~ 334 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHE-GNSNDIAFTVAENELKKAEAVAEAIA 334 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCC-CCCccEEEEEeHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999643221 23467889999 77766666666655
No 259
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=35.38 E-value=1.1e+02 Score=36.09 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=42.4
Q ss_pred EEEEEEEecc--ccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCe
Q 002745 797 QWFSVVCIDR--RGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGV 864 (885)
Q Consensus 797 ~~I~V~a~DR--~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV 864 (885)
+.|.|...+- +|++++|.++|++.++||..+...+. ...+.|.|. .+.+...+++..+++..++
T Consensus 303 ~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s----e~sIs~~I~~~~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 303 ARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS----ETSISFTVDKEDADQAKTLLKSELNLSAL 369 (441)
T ss_pred EEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC----CceEEEEEEHHHHHHHHHHHHHHHHhcCc
Confidence 3455543332 69999999999999999988853221 134788888 6666666666655433333
No 260
>PF08753 NikR_C: NikR C terminal nickel binding domain; InterPro: IPR014864 NikR is a transcription factor that regulates nickel uptake. It consists of two dimeric DNA binding domains separated by a tetrameric regulatory domain that binds nickel. This protein corresponds to the C-terminal regulatory domain which contains four nickel binding sites at the tetramer interface []. ; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 2WVB_B 2WVD_C 3QSI_B 3LGH_A 2CAD_A ....
Probab=33.58 E-value=3.1e+02 Score=24.45 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=44.6
Q ss_pred cccHHHHHHHHHHhCCcce-eeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeeccc
Q 002745 806 RRGIMADVTTALATVGVTI-CSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 806 R~GlLadItsvIa~~~iNI-~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.+++...++.+--+..--| .+..+.-+ ++.-.-.|.++++.+++..+..+|+.++||..++.
T Consensus 12 ~~~l~~~l~~iqH~~~~~I~s~~Hvhl~--~~~ClEvivv~G~~~~I~~l~~~l~~~kGV~~~~l 74 (78)
T PF08753_consen 12 KRELSERLTEIQHEYHDIIISSLHVHLD--HDNCLEVIVVRGPADRIKELAEKLRSLKGVKHVKL 74 (78)
T ss_dssp STTHHHHHHHHHHHTTTCEEEEEEEEES--SSEEEEEEEEEEEHHHHHHHHHHHHTSTTEEEEEE
T ss_pred chhHHHHHHHHHHhCcCeEEEeeEEeec--CCCeEEEEEEEcCHHHHHHHHHHHhccCCeeEEEE
Confidence 4579999999887754444 44444433 23344455556999999999999999999998763
No 261
>PRK12704 phosphodiesterase; Provisional
Probab=33.24 E-value=40 Score=40.69 Aligned_cols=34 Identities=44% Similarity=0.650 Sum_probs=25.8
Q ss_pred CCcccchHHHHHHHH----HHcCCCHH-HHHHHhhcccc
Q 002745 168 GEPFIIHPVEVARIL----GELELDWE-SIAAGLLHDTV 201 (885)
Q Consensus 168 GePYi~Hpl~VA~iL----a~l~~D~~-tI~AALLHDvv 201 (885)
|...+.|.++||.+. ..+|+|.+ ...||||||+=
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIG 371 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 445678999999875 25788765 47899999963
No 262
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=32.73 E-value=78 Score=27.07 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=40.4
Q ss_pred ceEeecCCCceEec--CCCCcHhHHH--Hhccccccc-ceEEEEECCEecCCCcc-----CCCCCeEEEE
Q 002745 564 RVFVFTPRGEIKNL--PKGATVVDYA--YMIHTEIGN-KMVAAKVNGNLVSPTHV-----LANAEVVEII 623 (885)
Q Consensus 564 ~V~VftP~G~i~~l--p~gsT~lDfA--y~ih~~ig~-~~~~akvNG~~v~l~~~-----L~~gd~VeIi 623 (885)
.|.|.+++|+.+.+ ....|...+. |+-...+.. .-+.-..||+.+..+.. +++||+|+++
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 36788888865554 6667776664 444444555 55777888988877764 6999999985
No 263
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=32.69 E-value=66 Score=36.08 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=36.1
Q ss_pred CCceEec-CCCCcHhHHHHhcccccccceE-------------EEEECCEe--c-CCCccCCCCCeEE
Q 002745 571 RGEIKNL-PKGATVVDYAYMIHTEIGNKMV-------------AAKVNGNL--V-SPTHVLANAEVVE 621 (885)
Q Consensus 571 ~G~i~~l-p~gsT~lDfAy~ih~~ig~~~~-------------~akvNG~~--v-~l~~~L~~gd~Ve 621 (885)
||+.+++ |+|.|.+|+|.+.+-.|-+-|. -+.|+|+. + .=.+++++|.+|.
T Consensus 74 DGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~ 141 (297)
T PTZ00305 74 NKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII 141 (297)
T ss_pred CCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE
Confidence 8999999 9999999999887555443322 35667752 2 3345788888776
No 264
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism]
Probab=32.50 E-value=1.4e+02 Score=34.85 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=49.8
Q ss_pred EEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeec-CCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 797 QWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 797 ~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
..+-+...++.|-|+++..++...++||..+.+...+ ...-..+.+.++....+|..++.-+++.
T Consensus 37 ~~~if~~r~~~~~l~~~Lk~f~~~~vnl~HiEsR~s~~~~~~~evlv~~~~~~~~l~~~i~~lrq~ 102 (461)
T KOG3820|consen 37 ISLIFSLRNKVGALARALKAFEEFHVNLLHIESRPSERRSSGYEVLVELDATRGQLIQAIELLRQN 102 (461)
T ss_pred EEEEEEecccchHHHHHHHHhhhcCceEEEeecccccccCCCceEEEeeccchhhHHHHHHHHHHh
Confidence 3466678889999999999999999999999987542 1223555555556666899999888876
No 265
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=31.90 E-value=40 Score=38.53 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=43.2
Q ss_pred ceEeec--CCC-ceEecCCCCcHhHHHHhcccccccceEEEEEC-----------------CE--ecCCCccCCCCCeEE
Q 002745 564 RVFVFT--PRG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------GN--LVSPTHVLANAEVVE 621 (885)
Q Consensus 564 ~V~Vft--P~G-~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvN-----------------G~--~v~l~~~L~~gd~Ve 621 (885)
-++-|| |++ ..+.+-+|.++.+.|--||++.-+..+.|-|+ |+ .+.-+|.+++||++-
T Consensus 307 li~fFt~G~~eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~ 386 (391)
T KOG1491|consen 307 LIVFFTCGEDEVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIF 386 (391)
T ss_pred ceEEEeeCCchheeeehhhccccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEE
Confidence 455565 665 56789999999999999999988877766552 22 344567788888764
Q ss_pred E
Q 002745 622 I 622 (885)
Q Consensus 622 I 622 (885)
.
T Consensus 387 F 387 (391)
T KOG1491|consen 387 F 387 (391)
T ss_pred E
Confidence 3
No 266
>PRK08841 aspartate kinase; Validated
Probab=31.69 E-value=88 Score=36.43 Aligned_cols=56 Identities=16% Similarity=0.389 Sum_probs=44.0
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHH
Q 002745 796 IQWFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSS 857 (885)
Q Consensus 796 ~~~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~k 857 (885)
.+-+.|++.+.+|+++.+.++|++.++||..+... ...+.|.|. .|.+...+.+.+
T Consensus 318 ~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~s------~~~is~vv~~~~~~~av~~lH~ 374 (392)
T PRK08841 318 VSLLTLVGLEANGMVEHACNLLAQNGIDVRQCSTE------PQSSMLVLDPANVDRAANILHK 374 (392)
T ss_pred EEEEEEECCCChHHHHHHHHHHHhCCCCEEEEECC------CcEEEEEEeHHHHHHHHHHHHH
Confidence 45688888889999999999999999999888642 255778888 677666666554
No 267
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=31.65 E-value=83 Score=34.08 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=44.5
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeeccc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWST 869 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~ 869 (885)
.+=.|.-|..|...|.+.|+.|.+..+.-.. .-.+.|. .+.+.+.+++.+|+..++|.+|-.
T Consensus 169 ~~c~p~~~~~v~~~L~~~g~~i~~~e~~~~P-----~~~v~l~~e~~~~~~~lie~Lee~dDV~~Vy~ 231 (234)
T PF01709_consen 169 FICDPSDLSAVKKALEKKGYEIESAELEYIP-----NNPVELSEEDAEKVEKLIEALEELDDVQNVYH 231 (234)
T ss_dssp EEEEGGGHHHHHHHHHHTT---SEEEEEEEE-----SS-EE--HHHHHHHHHHHHHHHTSTTEEEEEE
T ss_pred EEECHHHHHHHHHHHHHcCCCeeEEEEEEeC-----CCCcccCHHHHHHHHHHHHHHhCCcCcceeee
Confidence 3446788999999999999999887765332 1234457 789999999999999999999853
No 268
>PRK12705 hypothetical protein; Provisional
Probab=31.36 E-value=39 Score=40.66 Aligned_cols=36 Identities=42% Similarity=0.609 Sum_probs=27.5
Q ss_pred cCCcccchHHHHHHHHH----HcCCCHH-HHHHHhhccccc
Q 002745 167 SGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (885)
Q Consensus 167 sGePYi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (885)
.|...+.|.++||.+.. .+|+|.+ ...||||||+=.
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 35556789999998753 5788765 478999999843
No 269
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=31.21 E-value=1.6e+02 Score=29.78 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=48.1
Q ss_pred EEEEEe-ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeccccccC
Q 002745 799 FSVVCI-DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWSTGCSW 873 (885)
Q Consensus 799 I~V~a~-DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll-~kI~~V~gV~~V~~g~~~ 873 (885)
+.|.+. +++..+.++...|++. -.|..+...+ |.+.+.+.+. .|.++|.+++ ..|..++||.++.+--..
T Consensus 78 v~i~~~~~~~~~~~~~~~~l~~~-p~V~~~~~vt----G~~d~~l~v~~~~~~~l~~~l~~~l~~~~gV~~~~t~ivl 150 (164)
T PRK11169 78 VEITLNRGAPDVFEQFNAAVQKL-EEIQECHLVS----GDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM 150 (164)
T ss_pred EEEEEcCCChHHHHHHHHHHhcC-cceeeeeeec----CCCCEEEEEEECCHHHHHHHHHHHhhcCCCeeeEEEEEEE
Confidence 444443 4567788898888864 2355555432 2345666666 7999999988 689999999988764443
No 270
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=30.75 E-value=27 Score=37.24 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHHH-------cC--CCHHH-HHHHhhccccccCCCCCHHHHH---HHhCHHHHHHHhhhcccccccccc
Q 002745 171 FIIHPVEVARILGE-------LE--LDWES-IAAGLLHDTVEDTNVVTFERIE---EEFGATVRRIVEGETKVSKLGKLK 237 (885)
Q Consensus 171 Yi~Hpl~VA~iLa~-------l~--~D~~t-I~AALLHDvvEDT~~~t~e~I~---~~FG~~Va~LV~glTk~s~l~~~~ 237 (885)
--.|...||.|..- .| .|+.. ...||+||..|-.- -||. +.+.|+...++..|-+...-.-+.
T Consensus 30 VA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~Ft----GDI~TPVKy~tPelr~~~~~VE~~m~~~~i~ 105 (215)
T PF12917_consen 30 VAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFT----GDIKTPVKYATPELREMLAQVEEEMTENFIK 105 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS--------S-SSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHc----CCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34688888877522 23 46644 58899999998532 1222 234555555555443321100000
Q ss_pred cccCCcchhhhhHHHHHHHHHhccCC-ceEEeehhhhHHhhhh
Q 002745 238 CKNENHSVQDVKADDLRQMFLAMTEE-VRVIIVKLADRLHNMR 279 (885)
Q Consensus 238 ~~~~~~~~~~~qae~lRkmLlAm~~D-iRvvLIKLADRLhNmR 279 (885)
.. -..+-| +.+|.++.---+| +-..+||.||.++-+-
T Consensus 106 ~~----iP~e~q-~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 106 KE----IPEEFQ-EAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp HH----S-GGGH-HHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred hh----CCHHHH-HHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 00 001122 3455555433222 6677899999998763
No 271
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.56 E-value=41 Score=40.54 Aligned_cols=32 Identities=41% Similarity=0.534 Sum_probs=25.0
Q ss_pred cccchHHHHHHHH----HHcCCCHH-HHHHHhhcccc
Q 002745 170 PFIIHPVEVARIL----GELELDWE-SIAAGLLHDTV 201 (885)
Q Consensus 170 PYi~Hpl~VA~iL----a~l~~D~~-tI~AALLHDvv 201 (885)
..+.|.++||.+. ..+|+|.+ ...||||||+=
T Consensus 329 ~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIG 365 (514)
T TIGR03319 329 NVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365 (514)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 3578999999875 35788875 46799999973
No 272
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=1.7e+02 Score=32.55 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=66.6
Q ss_pred hhhHHhhhhhccCCCCCchhhHHHHHHHHHHHHHHHhchHHHHHHHhcccccc----c-ChHHHHHHHHHHHHHhhhHHH
Q 002745 271 LADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMY----T-NAEDYAKVKRRVADLYKEHEK 345 (885)
Q Consensus 271 LADRLhNmRtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDL~f~~----l-~p~~y~~i~~~l~~~~~~~~~ 345 (885)
+.-+.+|.--+...++++|.++..|++.+.+-. -|+..+-..+--+.|++ + +++=|.+.|++.++.-.+--.
T Consensus 11 ~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~---y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~ 87 (285)
T COG1578 11 LLRQAVNAVKLATDDEDLRSRIMSEALKLLSEE---YGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLP 87 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh---hCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 445556665566677888999999999876533 33333333333333333 3 367788887777764432221
Q ss_pred HHH--------HHHHHHHHHHhhhcccccccceeEEEE-EecChHHHHHHHHhcCCCCC
Q 002745 346 ELE--------EANKILMKKIEDDQFLDLMTVKTEIRS-VCKEPYSIYKAVLKSRGSIN 395 (885)
Q Consensus 346 ~i~--------~~~~~L~~~L~~~~~l~~~~i~~~V~g-R~K~~ySI~~Km~rk~~~~~ 395 (885)
.+. .+...++-.+..+ .|++.|.| ++..+.--.+||...+..++
T Consensus 88 ~vr~~~~~~~~dl~~Avk~ai~GN------~iDfgv~G~~~~~lee~~~~~~~~~l~i~ 140 (285)
T COG1578 88 KVRENIEDTPEDLKTAVKLAIVGN------VIDFGVLGFSPFDLEEEVEKLLDAELYID 140 (285)
T ss_pred HHHhcccCChHHHHHHHHHHHHhc------ceeeccccCCHhHHHHHHHHhhcCccccc
Confidence 111 1222333222222 46788987 77778777777776665443
No 273
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=29.93 E-value=36 Score=38.69 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.3
Q ss_pred CcccchHHHHHHHHH----HcCCCH-HHHHHHhhccccc
Q 002745 169 EPFIIHPVEVARILG----ELELDW-ESIAAGLLHDTVE 202 (885)
Q Consensus 169 ePYi~Hpl~VA~iLa----~l~~D~-~tI~AALLHDvvE 202 (885)
++.+.|.+.||.+.. .+|+|. +...||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 455789999998753 356665 4688999999753
No 274
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=29.67 E-value=50 Score=35.14 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=32.6
Q ss_pred EecCCCCcHhHHHHhcc----cccccce---------EEEEECCEec-CCCccCCC-CCe
Q 002745 575 KNLPKGATVVDYAYMIH----TEIGNKM---------VAAKVNGNLV-SPTHVLAN-AEV 619 (885)
Q Consensus 575 ~~lp~gsT~lDfAy~ih----~~ig~~~---------~~akvNG~~v-~l~~~L~~-gd~ 619 (885)
++++.|.|++|++..|+ +.++.+. =+++|||+.+ .-.+++++ |..
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~ 78 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQP 78 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCC
Confidence 45669999999998876 3343331 1789999887 57778888 873
No 275
>PRK07431 aspartate kinase; Provisional
Probab=29.19 E-value=1.1e+02 Score=37.42 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=44.7
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeec-CCcEEEEEEEEE-cCHHHHHHHHHHhc
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDR-GRGIAVMLFHVE-GNLESLVNACSSVD 859 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~-~~~~a~m~f~IE-~d~e~L~rll~kI~ 859 (885)
..+++|.++.|.+.|++.++||..+...... +.+...+.|++. .+...+..++..++
T Consensus 447 ~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~~~~l~~l~ 505 (587)
T PRK07431 447 VPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELA 505 (587)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHHHHHHHHHH
Confidence 4577999999999999999999999763221 124567889999 88888888887776
No 276
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=28.71 E-value=1.3e+02 Score=35.22 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=39.7
Q ss_pred EEEEEE---EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 797 QWFSVV---CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 797 ~~I~V~---a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
+.+.|+ ..+++|++++|.++|++.++||..+... . ..+.|.|. .|.+...+.+.
T Consensus 379 a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~s---e---~~Is~vV~~~d~~~a~~~Lh 436 (441)
T TIGR00657 379 AKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISSS---E---INISFVVDEKDAEKAVRLLH 436 (441)
T ss_pred EEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEec---C---CcEEEEEeHHHHHHHHHHHH
Confidence 446664 3588999999999999999999988732 1 44788888 66665554443
No 277
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=28.55 E-value=67 Score=35.08 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhcCCCcccCCcccchHHHHHHHHHHcCCCHHH-HHHHhhccc
Q 002745 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (885)
Q Consensus 149 l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~t-I~AALLHDv 200 (885)
|.+|+++....-..--.....|=|.|.++.|+.++.-.-+++- ..+||+||.
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 4556666655543333335578899999999999876445554 468999986
No 278
>PRK09084 aspartate kinase III; Validated
Probab=28.20 E-value=1.7e+02 Score=34.59 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=43.2
Q ss_pred eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHH------HHHHHHHHhccccCeeecccccc
Q 002745 804 IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE------SLVNACSSVDLILGVLGWSTGCS 872 (885)
Q Consensus 804 ~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e------~L~rll~kI~~V~gV~~V~~g~~ 872 (885)
.+.+|.+++|.++|++.++||.-+.+. ...+.|+|+ .+.. ...+++..++++. -+++..+|+
T Consensus 317 ~~~~g~~a~if~~l~~~~I~Vd~I~ss------e~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~-~i~~~~~va 385 (448)
T PRK09084 317 LHARGFLAEVFGILARHKISVDLITTS------EVSVSLTLDTTGSTSTGDTLLTQALLTELSQLC-RVEVEEGLA 385 (448)
T ss_pred CccccHHHHHHHHHHHcCCeEEEEecc------CcEEEEEEechhhhhhhhHHHHHHHHHHHhcCC-eEEEECCeE
Confidence 368899999999999999999988642 145788888 5533 2357777776532 234444554
No 279
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=27.70 E-value=80 Score=37.31 Aligned_cols=57 Identities=30% Similarity=0.188 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccCC-c----ccchHHHHHHHHH----HcCCCHH-HHHHHhhcccc
Q 002745 145 ELELVRRALMLAFEAHDGQKRRSGE-P----FIIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (885)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~RksGe-P----Yi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvv 201 (885)
|.++|--.-.|-.-.+..|.-..++ - =++|.++||.+.. .++.+.+ +.+|||+||+=
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 5566777777777788888654322 2 2589999999864 3566654 57899999973
No 280
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=27.54 E-value=2.1e+02 Score=33.55 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=56.0
Q ss_pred ccccCCceeeeecCCCCCCCCCCCChHHHHHhhhhhhcCCChh-hHHHHHHHH-------HHHHHhhcCCCcccC--Ccc
Q 002745 102 LHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSPN-ELELVRRAL-------MLAFEAHDGQKRRSG--EPF 171 (885)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~l~~A~-------~~A~~aH~gQ~RksG--ePY 171 (885)
+..+...|+...... ....-..+++|.+|..+.+.+..-.+. -+..+.+.= +|+.-..-.|....- .+-
T Consensus 150 f~i~~~T~~~i~~~~-~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv 228 (409)
T PRK10885 150 FRIAPETLALMREMV-ASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDT 228 (409)
T ss_pred CCcCHHHHHHHHHhh-hhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcH
Confidence 344445555443221 112344578899999998876543333 233343321 122222223432211 244
Q ss_pred cchHHHHHHHHHHcCCCHHHHHHHhhcccc
Q 002745 172 IIHPVEVARILGELELDWESIAAGLLHDTV 201 (885)
Q Consensus 172 i~Hpl~VA~iLa~l~~D~~tI~AALLHDvv 201 (885)
..|-+.|...+..+..+.....||||||+=
T Consensus 229 ~~Htl~~l~~~~~l~~~l~lr~AaLlHDlG 258 (409)
T PRK10885 229 GIHTLMVLDQAAKLSPSLDVRFAALCHDLG 258 (409)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcccc
Confidence 579898888888777777788999999984
No 281
>PRK04460 nickel responsive regulator; Provisional
Probab=27.37 E-value=5.3e+02 Score=25.78 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=55.4
Q ss_pred ccCCCCCceeEEEEEEEec--cccHHHHHHHHHHhCCcce-eeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccC
Q 002745 787 TWHNLEGHSIQWFSVVCID--RRGIMADVTTALATVGVTI-CSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILG 863 (885)
Q Consensus 787 ~W~~~~~~~~~~I~V~a~D--R~GlLadItsvIa~~~iNI-~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~g 863 (885)
.|...++.-...|.+ .+| ..++-..++.+--+..-.| .+..+.-+ ...-.-.|.++++...+..+.++|..++|
T Consensus 45 ~~~~~~~~~~Gvi~v-vYdH~~~~l~~~l~~iqH~~~d~Iiss~HvHld--~~~ClEvivv~G~~~~I~~L~~~l~~~kG 121 (137)
T PRK04460 45 EWEEGDEEVAGTVTL-VYNHHVSDLAQKLTEIQHDHHDEIISSLHVHLD--HHNCLEVLVLKGKAKEIKKIADRLISTKG 121 (137)
T ss_pred hhhcCCCeEEEEEEE-EEeCCcchHHHHHHHHHHhhhceEEEEEEEecC--CCcEEEEEEEEcCHHHHHHHHHHHHhcCC
Confidence 676443332344554 444 4478888999887765555 44444422 23343345555999999999999999999
Q ss_pred eeecccccc
Q 002745 864 VLGWSTGCS 872 (885)
Q Consensus 864 V~~V~~g~~ 872 (885)
|..++.-+.
T Consensus 122 V~~~kl~~~ 130 (137)
T PRK04460 122 VKHGKLVMT 130 (137)
T ss_pred eeEEEEEEe
Confidence 999988776
No 282
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.03 E-value=1.5e+02 Score=26.79 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=41.9
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cC--HHHHHHHHHHhccccCe
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GN--LESLVNACSSVDLILGV 864 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d--~e~L~rll~kI~~V~gV 864 (885)
.....|.++.+.+++.+.++++..+-+.. -.|.+.|. .+ .+.+.+++++|++.-+.
T Consensus 11 Mn~evGF~rk~L~I~E~~~is~Eh~PSGI------D~~Siii~~~~~~~~~~~~i~~~i~~~~~p 69 (76)
T cd04911 11 MNREVGFGRKLLSILEDNGISYEHMPSGI------DDISIIIRDNQLTDEKEQKILAEIKEELHP 69 (76)
T ss_pred ccchhcHHHHHHHHHHHcCCCEeeecCCC------ccEEEEEEccccchhhHHHHHHHHHHhcCC
Confidence 35678999999999999999999885432 22677777 32 33789999999885433
No 283
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=26.78 E-value=1.3e+02 Score=35.76 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=45.5
Q ss_pred ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhcc-ccCeeeccccccC
Q 002745 805 DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDL-ILGVLGWSTGCSW 873 (885)
Q Consensus 805 DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~-V~gV~~V~~g~~~ 873 (885)
+.+|++++|.++++++++|+.-+....+. ..+.|++. .+.....+.+.+... ..+-.++..+|+.
T Consensus 319 ~~~g~~a~vf~~l~~~~i~v~~I~q~~~~----~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~ 385 (447)
T COG0527 319 GMVGFAARVFGILAEAGINVDLITQSISE----VSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLAL 385 (447)
T ss_pred ccccHHHHHHHHHHHcCCcEEEEEeccCC----CeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeE
Confidence 44699999999999999999988655332 22899999 776666666555554 2224556556654
No 284
>PRK08210 aspartate kinase I; Reviewed
Probab=26.57 E-value=1.3e+02 Score=34.87 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=37.0
Q ss_pred EEEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 797 QWFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 797 ~~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
+-|.|.+ .+++|+++++.++|++.++||....+. -..+.|.|. .|.+...+.+.
T Consensus 340 a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~s------~~~is~vv~~~~~~~a~~~Lh 397 (403)
T PRK08210 340 AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSADS------HTTIWVLVKEEDMEKAVNALH 397 (403)
T ss_pred EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEecC------CCEEEEEEcHHHHHHHHHHHH
Confidence 3455554 489999999999999999999865431 134667777 55555444443
No 285
>PLN02551 aspartokinase
Probab=26.23 E-value=1.9e+02 Score=35.13 Aligned_cols=68 Identities=15% Similarity=0.274 Sum_probs=45.0
Q ss_pred EEEEEE---eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHH-------HHHHHHHHhccccCeee
Q 002745 798 WFSVVC---IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLE-------SLVNACSSVDLILGVLG 866 (885)
Q Consensus 798 ~I~V~a---~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e-------~L~rll~kI~~V~gV~~ 866 (885)
-|.|+. .+.+|.++.|.+.|++.++||.-+.+. ...+.|+|. .+.. .|.+++..|+++.. ++
T Consensus 368 li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssS------e~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~-V~ 440 (521)
T PLN02551 368 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSISLTLDPSKLWSRELIQQELDHLVEELEKIAV-VN 440 (521)
T ss_pred EEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEecc------CCEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCe-EE
Confidence 345543 368999999999999999999998532 134778888 5542 35566666765432 34
Q ss_pred cccccc
Q 002745 867 WSTGCS 872 (885)
Q Consensus 867 V~~g~~ 872 (885)
+..+|+
T Consensus 441 v~~~vA 446 (521)
T PLN02551 441 LLQGRS 446 (521)
T ss_pred EeCCEE
Confidence 444444
No 286
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=26.10 E-value=83 Score=35.98 Aligned_cols=56 Identities=23% Similarity=0.195 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCcc-cCCcc----cchHHHHHHHHH----HcCCCHHH-HHHHhhccc
Q 002745 145 ELELVRRALMLAFEAHDGQKRR-SGEPF----IIHPVEVARILG----ELELDWES-IAAGLLHDT 200 (885)
Q Consensus 145 ~~~~l~~A~~~A~~aH~gQ~Rk-sGePY----i~Hpl~VA~iLa----~l~~D~~t-I~AALLHDv 200 (885)
|.++|-..-.|-+-.+..|.-. .|.-+ ++|.++|+.+.. .++.+.+. -+|||+||+
T Consensus 32 D~drii~s~~frRL~~ktQv~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDi 97 (336)
T PRK01286 32 DRDRIIHSKAFRRLKHKTQVFINPEGDHYRTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDL 97 (336)
T ss_pred hHHHHhCCHHHHhhhccceecccCCCcccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcC
Confidence 4444544445555555556532 22223 689999999764 35666553 579999997
No 287
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=25.65 E-value=2.2e+02 Score=24.29 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=44.8
Q ss_pred ceEeecCCCce--EecCCCCcHhHHHHhcccccccc--eEEEEECCEecCCCc-----cCCCCCeEEEEec
Q 002745 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (885)
Q Consensus 564 ~V~VftP~G~i--~~lp~gsT~lDfAy~ih~~ig~~--~~~akvNG~~v~l~~-----~L~~gd~VeIit~ 625 (885)
.|+|-+++|+. ++++...|+.++=-.|+...|-. ...-..+|+...-+. -+++|++|.++..
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 37888999865 57778889999988888776544 334446787666444 3688999988763
No 288
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=25.33 E-value=2.7e+02 Score=27.72 Aligned_cols=66 Identities=9% Similarity=0.158 Sum_probs=45.1
Q ss_pred EEEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHH-HHhccccCeeeccc
Q 002745 798 WFSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNAC-SSVDLILGVLGWST 869 (885)
Q Consensus 798 ~I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll-~kI~~V~gV~~V~~ 869 (885)
.+.|.+.+ ++-..++...|++.. .|..+...+ |.+.+.+.+. .|.++|.+++ .+|..++||.++.+
T Consensus 72 ~v~v~v~~-~~~~~~~~~~l~~~p-~V~~~~~~t----G~~dl~~~v~~~d~~~l~~~~~~~l~~~~gV~~~~t 139 (153)
T PRK11179 72 FIGIILKS-AKDYPSALAKLESLD-EVVEAYYTT----GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTET 139 (153)
T ss_pred EEEEEEcc-cccHHHHHHHHhCCC-CEEEEEEcc----cCCCEEEEEEECCHHHHHHHHHHHhhcCCCeeeEEE
Confidence 34444432 344577888887642 356665442 3466777777 8999999986 78999999998765
No 289
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.93 E-value=2.5e+02 Score=24.37 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 809 IMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 809 lLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
+|++++..+. ..+||..-+++.-.+.....|.+.+.++.+++.++++.|++-
T Consensus 18 iis~l~~~~~-v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 18 IISQLIREFG-VDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQ 69 (76)
T ss_dssp HHHHHHHHHT--EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHC
Confidence 5555554443 568999998887665556777777778889999999999864
No 290
>PRK09181 aspartate kinase; Validated
Probab=24.21 E-value=1.8e+02 Score=34.86 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=41.2
Q ss_pred eEEEEEEEe--ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 796 IQWFSVVCI--DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 796 ~~~I~V~a~--DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
.+.|.|++. .++|+.+++.++|++.++||..+...+. -..+.|.|. .|.+...+.+.
T Consensus 402 ~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~s----e~~Is~vV~~~d~~~Av~~lH 461 (475)
T PRK09181 402 VAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMR----QVNMQFVVDEDDYEKAICALH 461 (475)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCC----cceEEEEEeHHHHHHHHHHHH
Confidence 355666654 3899999999999999999998865422 245777787 66665555443
No 291
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=24.16 E-value=2.4e+02 Score=24.97 Aligned_cols=61 Identities=10% Similarity=0.155 Sum_probs=43.5
Q ss_pred EEEEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccccCeeecccc
Q 002745 799 FSVVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLILGVLGWSTG 870 (885)
Q Consensus 799 I~V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V~gV~~V~~g 870 (885)
+.|.+ ...-..+|.+++...++.|..++.. .+.|.+.++.+.++.+++.|+. .|++++.|.
T Consensus 7 iKV~~--~~~~r~ei~~l~~~f~a~ivd~~~~--------~~iie~tG~~~kid~fi~~l~~-~gi~Ei~Rt 67 (75)
T PF10369_consen 7 IKVKA--TPENRSEILQLAEIFRARIVDVSPD--------SIIIELTGTPEKIDAFIKLLKP-FGILEIART 67 (75)
T ss_dssp EEEE---SCHHHHHHHHHHHHTT-EEEEEETT--------EEEEEEEE-HHHHHHHHHHSTG-GGEEEEEEE
T ss_pred EEEEC--CccCHHHHHHHHHHhCCEEEEECCC--------EEEEEEcCCHHHHHHHHHHhhh-cCCEEEEcc
Confidence 44444 4566688888888889988777521 1445555999999999999999 899998763
No 292
>PRK11507 ribosome-associated protein; Provisional
Probab=24.13 E-value=84 Score=27.97 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.5
Q ss_pred EEEECCEecCCCc-cCCCCCeEEE
Q 002745 600 AAKVNGNLVSPTH-VLANAEVVEI 622 (885)
Q Consensus 600 ~akvNG~~v~l~~-~L~~gd~VeI 622 (885)
..+|||+.-.-.. .|..||+|++
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEE
Confidence 5789998665555 5999999998
No 293
>PRK02967 nickel responsive regulator; Provisional
Probab=23.81 E-value=7e+02 Score=24.98 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=56.5
Q ss_pred cccCCCCCce-eEEEEEEEecc--ccHHHHHHHHHHhCCcce-eeeEEeeecCCcEEEEEEEEEcCHHHHHHHHHHhccc
Q 002745 786 ATWHNLEGHS-IQWFSVVCIDR--RGIMADVTTALATVGVTI-CSCVAEIDRGRGIAVMLFHVEGNLESLVNACSSVDLI 861 (885)
Q Consensus 786 v~W~~~~~~~-~~~I~V~a~DR--~GlLadItsvIa~~~iNI-~sv~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~~V 861 (885)
-.|....+.. ...|.+ ++|- +++-..++++--+..-.| .+..+.-+ ...-.-.|.++++.+.+..+..+|..+
T Consensus 43 ~~~~~~~~~~~~G~it~-vYdH~~~~l~~~l~~iqH~~~d~I~ss~HvHld--~~~ClEvivv~G~~~~I~~l~~~l~~~ 119 (139)
T PRK02967 43 ERTQEHQGTQCVAVLSY-VYDHEKRDLASRLVSTQHHHHDLSVATLHVHLD--HDDCLEVAVLKGDTGDVQHFADDVIAE 119 (139)
T ss_pred hhhhccCCCeEEEEEEE-EEeCCcccHHHHHHHHHHhhcceEEEEEEEecC--CCcEEEEEEEEcCHHHHHHHHHHHHhc
Confidence 4786442222 334444 4444 488888998887764444 44444432 233444556669999999999999999
Q ss_pred cCeeecccccc
Q 002745 862 LGVLGWSTGCS 872 (885)
Q Consensus 862 ~gV~~V~~g~~ 872 (885)
+||.-++.-++
T Consensus 120 kGVk~~~l~~~ 130 (139)
T PRK02967 120 RGVRHGHLQCL 130 (139)
T ss_pred CCeeEEEEEEe
Confidence 99999988877
No 294
>PLN02551 aspartokinase
Probab=23.79 E-value=2e+02 Score=34.82 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=40.4
Q ss_pred eEEEEEEE--eccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHH
Q 002745 796 IQWFSVVC--IDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACS 856 (885)
Q Consensus 796 ~~~I~V~a--~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~ 856 (885)
.+.|.|++ ...+|+++++.++|++.++||..++..+ ....+.|.|. .|.+...+.+.
T Consensus 445 vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga----SeinIS~vV~~~d~~~Av~aLH 504 (521)
T PLN02551 445 RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA----SKVNISLIVNDDEAEQCVRALH 504 (521)
T ss_pred EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC----CCcEEEEEEeHHHHHHHHHHHH
Confidence 34455553 4688999999999999999998886432 2355778888 66665555443
No 295
>PRK00630 nickel responsive regulator; Provisional
Probab=22.75 E-value=7.4e+02 Score=25.11 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=56.6
Q ss_pred cccCCCC---CceeEEEEEEEecc--ccHHHHHHHHHHhCCcceeee-EEeeecCCcEEEEEEEEEcCHHHHHHHHHHhc
Q 002745 786 ATWHNLE---GHSIQWFSVVCIDR--RGIMADVTTALATVGVTICSC-VAEIDRGRGIAVMLFHVEGNLESLVNACSSVD 859 (885)
Q Consensus 786 v~W~~~~---~~~~~~I~V~a~DR--~GlLadItsvIa~~~iNI~sv-~~~~~~~~~~a~m~f~IE~d~e~L~rll~kI~ 859 (885)
-.|.... +.-...|.+ +.|. +++...++.+--+..-.|.+. .+.- +...-.-.|.|+++...+..+.++|.
T Consensus 52 ~~~~~~~~~~~~~~G~itv-vYdH~~~~l~~~l~~iqH~~~d~Iist~HvHl--d~~~CLEvivv~G~~~~I~~la~~l~ 128 (148)
T PRK00630 52 DNWAEDNPNDESKIAVLVV-IYDHHQRELNQRMIDIQHASGTHILCTTHIHM--DHHNCLETIILRGNSFEIQRLQLEIG 128 (148)
T ss_pred hhhhccCccCceEEEEEEE-EEeCCcchHHHHHHHHHHhhhceEEEEEEEec--CCCCEEEEEEEEcCHHHHHHHHHHHH
Confidence 3676444 222334444 4554 488899999887765555443 3332 22334445666699999999999999
Q ss_pred cccCeeeccccccC
Q 002745 860 LILGVLGWSTGCSW 873 (885)
Q Consensus 860 ~V~gV~~V~~g~~~ 873 (885)
.++||.-++.-++-
T Consensus 129 ~~kGVk~~kl~~~~ 142 (148)
T PRK00630 129 GLKGVKFAKLTKAS 142 (148)
T ss_pred hcCCeEEEEEEEec
Confidence 99999999876654
No 296
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=22.48 E-value=21 Score=25.02 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=11.8
Q ss_pred cceEeecCCCceEec
Q 002745 563 SRVFVFTPRGEIKNL 577 (885)
Q Consensus 563 ~~V~VftP~G~i~~l 577 (885)
..+.+|+|+|+++.+
T Consensus 3 ~~~t~FSp~Grl~QV 17 (23)
T PF10584_consen 3 RSITTFSPDGRLFQV 17 (23)
T ss_dssp SSTTSBBTTSSBHHH
T ss_pred CCceeECCCCeEEee
Confidence 456799999998764
No 297
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=22.38 E-value=1.8e+02 Score=25.03 Aligned_cols=62 Identities=13% Similarity=0.159 Sum_probs=43.1
Q ss_pred ceEeecCCCce--EecCCCCcHhHHHHhccccccc--ce--EEEEECCEecCCCc-----cCCCCCeEEEEec
Q 002745 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KM--VAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (885)
Q Consensus 564 ~V~VftP~G~i--~~lp~gsT~lDfAy~ih~~ig~--~~--~~akvNG~~v~l~~-----~L~~gd~VeIit~ 625 (885)
.|+|-++.|+. ++++...|+.|+=..|+...|- .+ ..-..+|+...-+. -+++|++|-++-+
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVS 74 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEe
Confidence 47888999975 4666778999998888776653 21 23335787765433 4789999887654
No 298
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=21.75 E-value=1.2e+02 Score=38.03 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=37.7
Q ss_pred CCceEecCCCCcHhHHHHhcccccccce-----------E--EEEECC--EecCC-CccCCCCCeEEE
Q 002745 571 RGEIKNLPKGATVVDYAYMIHTEIGNKM-----------V--AAKVNG--NLVSP-THVLANAEVVEI 622 (885)
Q Consensus 571 ~G~i~~lp~gsT~lDfAy~ih~~ig~~~-----------~--~akvNG--~~v~l-~~~L~~gd~VeI 622 (885)
||+.+++|+|.|+++.|-....+|-+-| . -+.|+| |+++- .+|..+|.+|..
T Consensus 7 DG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T 74 (693)
T COG1034 7 DGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVIST 74 (693)
T ss_pred CCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEec
Confidence 8999999999999999987644443332 2 556788 55543 458999999443
No 299
>PRK00110 hypothetical protein; Validated
Probab=21.68 E-value=1.2e+02 Score=33.33 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=50.6
Q ss_pred EEEeccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecccc
Q 002745 801 VVCIDRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTG 870 (885)
Q Consensus 801 V~a~DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~g 870 (885)
++.+=.+--|..|...|.+.+..|.+..+.-.. . -.+.|+ .+.+++.+++.+|+..++|.+|-.-
T Consensus 169 ~~i~~~p~~~~~v~~~L~~~g~~~~~sei~~~P-~----~~v~l~~e~~~~~~~li~~Led~dDVq~Vy~N 234 (245)
T PRK00110 169 FEVITAPEDFEAVRDALEAAGLEAESAEVTMIP-Q----NTVELDEETAEKLLKLIDALEDLDDVQNVYHN 234 (245)
T ss_pred EEEEECHHHHHHHHHHHHHcCCCeeeeEEEEec-C----CCcccCHHHHHHHHHHHHHHhcCCCcceEeEC
Confidence 445567888999999999999998877665332 1 133446 6789999999999999999999765
No 300
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.35 E-value=1.8e+02 Score=28.64 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=26.2
Q ss_pred EeccccHHHHHHHHHHhCCcceeeeEEe
Q 002745 803 CIDRRGIMADVTTALATVGVTICSCVAE 830 (885)
Q Consensus 803 a~DR~GlLadItsvIa~~~iNI~sv~~~ 830 (885)
.+|-.|+|+.|.+.|+++|+.|-.+++-
T Consensus 73 ~FgltGilasV~~pLsd~gigIFavSty 100 (128)
T COG3603 73 DFGLTGILASVSQPLSDNGIGIFAVSTY 100 (128)
T ss_pred cCCcchhhhhhhhhHhhCCccEEEEEec
Confidence 6899999999999999999999999876
No 301
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=21.12 E-value=2.5e+02 Score=35.96 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=45.9
Q ss_pred EEEEEEe---ccccHHHHHHHHHHhCCcceeeeEEeeecCCcEEEEEEEEE-cCHHHHHHHHHHhccccCeeecccccc
Q 002745 798 WFSVVCI---DRRGIMADVTTALATVGVTICSCVAEIDRGRGIAVMLFHVE-GNLESLVNACSSVDLILGVLGWSTGCS 872 (885)
Q Consensus 798 ~I~V~a~---DR~GlLadItsvIa~~~iNI~sv~~~~~~~~~~a~m~f~IE-~d~e~L~rll~kI~~V~gV~~V~~g~~ 872 (885)
-|.|... +.+|++++|.++|++.++|+.-++..++. ..+.|++. .+.+.+.+++.++. ..+=+++..+|+
T Consensus 319 ~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~----~sis~~i~~~~~~~~~~~l~~~~-~~~~i~v~~~~a 392 (810)
T PRK09466 319 LIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDR----QLLQLAYTSEVADSALKLLDDAA-LPGELKLREGLA 392 (810)
T ss_pred EEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCC----cEEEEEEeHHHHHHHHHHHHhhc-CCCcEEEeCCeE
Confidence 3455443 67889999999999999999888644221 24566666 55555556665553 334455666666
Done!