Query 002745
Match_columns 885
No_of_seqs 357 out of 2392
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:49:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002745.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1459-1463//hhsearch_pdb/002745hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 1.0 1 1 810.6 26.7 378 124-554 6-383 (393)
2 3l9d_A SMU.1046C, putative GTP 1.0 1 1 324.5 13.5 170 298-499 19-196 (255)
3 2be3_A GTP pyrophosphokinase; 1.0 1 1 293.0 16.9 163 371-562 43-213 (226)
4 3nqw_A CG11900; stringent resp 1.0 1 1 260.6 9.2 163 143-319 3-172 (179)
5 3nr1_A HD domain-containing pr 1.0 1 1 247.1 10.7 132 144-289 2-137 (178)
6 3hvz_A Uncharacterized protein 1.0 1 1 151.1 6.8 71 558-628 1-71 (78)
7 2eki_A DRG 1, developmentally- 1.0 1 1 102.2 7.2 66 563-628 10-90 (93)
8 1wxq_A GTP-binding protein; st 1.0 1 1 100.9 3.4 64 563-626 318-396 (397)
9 1tke_A Threonyl-tRNA synthetas 1.0 1 1 93.9 6.1 63 564-626 1-63 (224)
10 2kmm_A Guanosine-3',5'-BIS(dip 1.0 1 1 90.2 8.0 66 564-629 2-67 (73)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=1.00 E-value=1 Score=810.61 Aligned_cols=378 Identities=37% Similarity=0.613 Sum_probs=342.3
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 89947899866321038994249999999999999304897666986000699999999874999889999740001125
Q 002745 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (885)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvED 203 (885)
+++.+.+.+.+ ..|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++||
T Consensus 6 ~~~~~~l~~~~---~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvED 82 (393)
T 1vj7_A 6 NLTGEEVVALA---AKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED 82 (393)
T ss_dssp CCCHHHHHHHH---HHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 38999999999---875999889999999999999844675878996788899999999885599999999980118950
Q ss_pred CCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCC
Q ss_conf 88899889998859999999964101233453222357730454438999999984347841882214447853221048
Q 002745 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (885)
Q Consensus 204 t~~~T~eeI~~~FG~~Va~LV~gvTki~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~D~RviLIKLADRLhNmrtL~~ 283 (885)
|+ +|.++|++.||++|+.||+||||++++. +. .....|+|++||||+||++|+||++||||||+||||++..
T Consensus 83 t~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~---~~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~ 154 (393)
T 1vj7_A 83 TD-ITLDNIEFDFGKDVRDIVDGVTKLGKVE---YK----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKH 154 (393)
T ss_dssp SS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred CC-CCHHHHHHHHCHHHHHHHHHHHHCCCCC---CC----CHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCHHH
T ss_conf 79-9999999885889999999987343478---33----1789999999999985057850561109888876186432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99973356899999878889977515979999850000121958899999999988665899999999999999864001
Q 002745 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQF 363 (885)
Q Consensus 284 ~~~~kq~~iA~Etl~iYaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~e~~i~~~~~~L~~~L~~~~~ 363 (885)
+|+++|+++|+||++|||||||||||++||||||||||+||+|++|..|.+++.+.+.+++.+++++...|+..|.+.
T Consensus 155 ~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~-- 232 (393)
T 1vj7_A 155 LRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ-- 232 (393)
T ss_dssp -----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf 894889999999999999987403724899999998833544668999999999999889999999999999999862--
Q ss_pred CCCCCCEEEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 22353105998784295899999994299988533057899997289999999999927899999988662377666655
Q 002745 364 LDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAM 443 (885)
Q Consensus 364 ~~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~~i~Di~giRIIv~~~~~~~~~~~~~~~~dCY~vLg~ih~~~~pip~r~ 443 (885)
++.+.|+||+|++||||+||+||+.+|++|+|++|+|||++ +.+|||.++|+||+.|+|+|++|
T Consensus 233 ----gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~------------~~~dcy~vl~~i~~~~~~~~~~~ 296 (393)
T 1vj7_A 233 ----GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVME------------TQSDVYAMVGYIHELWRPMPGRF 296 (393)
T ss_dssp ----TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEES------------SHHHHHHHHHHHHHHSCBCTTCC
T ss_pred ----CCCEEEEEEECCHHHHHHHHHHHCCCHHHHCCCCEEEEEEC------------CHHHHHHHHHHHHHCCCCCCCCC
T ss_conf ----98417998858808999999873998545246313899978------------89999999999996288787744
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 44324999999641269980268766216999981545789999867762057753335456778999999996434430
Q 002745 444 KDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNN 523 (885)
Q Consensus 444 kDyIa~PK~NGYqSLHttV~~~~~~~~~~iEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (885)
||||+.||+||||||||+|.++. + ++||||||..||.|||+|||+||+||++..+ .. ..
T Consensus 297 kDyIa~PK~nGYqSlH~~v~~p~---~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~----------~~-------~~ 355 (393)
T 1vj7_A 297 KDYIAAPKANGYQSIHTTVYGPK---G-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRG----------KV-------NQ 355 (393)
T ss_dssp EETTTSCCTTCCCCEEEEEECSS---S-EEEEEEEEHHHHHHHHHTTCC-------------------------------
T ss_pred CCCCCCCCCCCCCEEEEEEEECC---C-EEEEEEECHHHHHHHHHHHHHHHCCCCCCCC----------CC-------CH
T ss_conf 46343887678641579998079---6-4899996599999987538988502568876----------65-------41
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 3588789999999999785406999312221
Q 002745 524 ANIALRISWLNAIREWQEEFVGNMTSREFVD 554 (885)
Q Consensus 524 ~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~ 554 (885)
....++++||++++|||++. .++.||+-
T Consensus 356 ~~~~~~~~wl~~ll~~~~~~---~~~~ef~~ 383 (393)
T 1vj7_A 356 AEQKVGMNWIKELVELQDAS---NGDAVDFV 383 (393)
T ss_dssp -------CHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHHHHHHCC---CCCHHHHH
T ss_conf 55679999999999987547---99188888
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=1.00 E-value=1 Score=324.49 Aligned_cols=170 Identities=21% Similarity=0.208 Sum_probs=142.6
Q ss_pred HHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEE
Q ss_conf 87888997751597999985000012195889999999998866589999999999999986400122353105998784
Q 002745 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 377 (885)
Q Consensus 298 ~iYaPLA~rLGi~~ik~ELEDL~f~~l~p~~y~~i~~~l~~~~~~~e~~i~~~~~~L~~~L~~~~~~~~~~i~~~V~~R~ 377 (885)
.||||||+||||+.++.+++++.+.| +..+.+++.+++.++.+.. ...... .+ ..|++|+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y--~~a~~el~~kl~~l~~e~~-----------~~~~~~------~i-~~V~~Rv 78 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPY--IQAVGELKIKFRGIRKQFR-----------KQKRHS------PI-EFVTGRV 78 (255)
T ss_dssp ----------------CCHHHHTHHH--HHHHHHHHHHHHHHHHHHH-----------HTTSCC------SC-CEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----------HHHCCC------CC-CEEEEEE
T ss_conf 10175552754899999999999999--9999999999999999999-----------861569------84-0378687
Q ss_pred CCHHHHHHHHHHCCCCCC----CCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 295899999994299988----5330578999972899999999999278999999886623776666554432499999
Q 002745 378 KEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPN 453 (885)
Q Consensus 378 K~~ySI~~Km~rk~~~~~----~i~Di~giRIIv~~~~~~~~~~~~~~~~dCY~vLg~ih~~~~pip~r~kDyIa~PK~N 453 (885)
|+++||++||.|++.+++ +|+|++|+|||+.. .+|||.++++||+.|.|.|.++||||+.||+|
T Consensus 79 Ks~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~------------~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~n 146 (255)
T 3l9d_A 79 KPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF------------VDDVNDVLELLRQRKDMKVIQERDYINNLKPS 146 (255)
T ss_dssp CCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS------------TTHHHHHHHHHHTCSSSEEEEEEEESCC-CCC
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEEC------------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 589999999985188832043103321068999947------------89999999999745787542100211077878
Q ss_pred CCCCEEEEEE-CC---CCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9641269980-26---8766216999981545789999867762057753
Q 002745 454 GYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (885)
Q Consensus 454 GYqSLHttV~-~~---~~~~~~~iEIQIRT~~Mh~~AE~Giaahw~yK~~ 499 (885)
||||||++|. |. .++.+.++||||||..||.|||+||++||||++.
T Consensus 147 GYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~~ 196 (255)
T 3l9d_A 147 GYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHGE 196 (255)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 82268999972543356888669999978789999999889986288899
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=1.00 E-value=1 Score=293.03 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=135.2
Q ss_pred EEEEEEECCHHHHHHHHHHCCCCCC----CCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5998784295899999994299988----533057899997289999999999927899999988662377666655443
Q 002745 371 TEIRSVCKEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 446 (885)
Q Consensus 371 ~~V~~R~K~~ySI~~Km~rk~~~~~----~i~Di~giRIIv~~~~~~~~~~~~~~~~dCY~vLg~ih~~~~pip~r~kDy 446 (885)
..|++|+|++|||++||.|++.+++ +|+|++|+|||+. +.+|||.++++||+.|.+.|.++|||
T Consensus 43 ~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~------------~~~d~y~v~~~i~~~~~~~~~~~kDy 110 (226)
T 2be3_A 43 EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQ------------FVDDVKEVVDILHKRQDMRIIQERDY 110 (226)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEES------------CGGGHHHHHHHHHTCSSEEEEEEEET
T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEC------------CHHHHHHHHHHHHHCCCCCEEEECCH
T ss_conf 158734799899999999638986541200222025899974------------78889999999986468851200353
Q ss_pred CCCCCCCCCCCEEEEEE-CC---CCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24999999641269980-26---876621699998154578999986776205775333545677899999999643443
Q 002745 447 IATPKPNGYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (885)
Q Consensus 447 Ia~PK~NGYqSLHttV~-~~---~~~~~~~iEIQIRT~~Mh~~AE~Giaahw~yK~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (885)
|+.||+||||||||+|. |. .++.+.++||||||..||.|||+||++||+|++.. +..-...+.
T Consensus 111 I~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~-------------~~~~~~~l~ 177 (226)
T 2be3_A 111 ITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDF-------------PDEIKKRLE 177 (226)
T ss_dssp TTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCC-------------CHHHHHHHH
T ss_pred HHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCCCCC-------------CHHHHHHHH
T ss_conf 2267878844899999746311468888379999960888999988699874776899-------------689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCC
Q ss_conf 0358878999999999978540699931222110111238
Q 002745 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLG 562 (885)
Q Consensus 523 ~~~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~~~~l~~ 562 (885)
.. ......|.+++.+|+++.. ++.+|++.++.+|++
T Consensus 178 ~~-a~~~~~~d~~m~~i~~~i~---~~~~~~~~~~~~~~~ 213 (226)
T 2be3_A 178 IT-ARIAHQLDEEMGEIRDDIQ---EAQALFDPLSRKLND 213 (226)
T ss_dssp HH-HHHHHHHHHHHHTTHHHHH---HHHHHCCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 99-9999999999999999876---368888886688762
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=260.60 Aligned_cols=163 Identities=26% Similarity=0.371 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHH-HCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCH
Q ss_conf 424999999999999930489766--69860006999999998-7499-9889999740001125888998899988599
Q 002745 143 PNELELVRRALMLAFEAHDGQKRR--SGEPFIIHPVEVARILG-ELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGA 218 (885)
Q Consensus 143 ~~~~~~i~~A~~~A~~aH~gQ~Rk--sGePYi~Hpl~VA~iLa-~l~~-D~~tI~AALLHDvvEDt~~~T~eeI~~~FG~ 218 (885)
..+...+.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++++ |.++++||||||++|||. +|.++|++.||+
T Consensus 3 ~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~-~t~e~i~~~FG~ 81 (179)
T 3nqw_A 3 TYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTD-ASFEDVEKLFGP 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSS-CCHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHCH
T ss_conf 3339999999999999720686878899868999999999999873999999999999240784079-999999998799
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCH-HHHHHHHH
Q ss_conf 99999964101233453222357730454438999999984347841882214447853221048999733-56899999
Q 002745 219 TVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ-SSIATETL 297 (885)
Q Consensus 219 ~Va~LV~gvTki~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~D~RviLIKLADRLhNmrtL~~~~~~kq-~~iA~Etl 297 (885)
+|+.||+|||++.++.... ....|.+++|+ .|+||++||||||+||||++...+++++ ..-.++++
T Consensus 82 ~Va~lV~gvtk~~~~~~~~-------~~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~ 148 (179)
T 3nqw_A 82 DVCGLVREVTDDKSLEKQE-------RKRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYF 148 (179)
T ss_dssp HHHHHHHHTCCCTTSCHHH-------HHHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHH-------HHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 9999999998444557887-------99999999885------7879999999999988998753793324699999999
Q ss_pred HHHHHHHHHHC--HHHHHHHHHCC
Q ss_conf 87888997751--59799998500
Q 002745 298 QVFAPLAKLLG--MYQIKSELENL 319 (885)
Q Consensus 298 ~iYaPLA~rLG--i~~ik~ELEDL 319 (885)
..|.+++..|+ -..+..+|.++
T Consensus 149 ~~~~~v~~~l~~~n~~l~~~~~~~ 172 (179)
T 3nqw_A 149 VWAKKVVDNLRGTNANLELKLDEI 172 (179)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999998725999999999999
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=247.09 Aligned_cols=132 Identities=39% Similarity=0.567 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHHH-HHCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHCHH
Q ss_conf 249999999999999304897666--986000699999999-87499-98899997400011258889988999885999
Q 002745 144 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARIL-GELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (885)
Q Consensus 144 ~~~~~i~~A~~~A~~aH~gQ~Rks--GePYi~Hpl~VA~iL-a~l~~-D~~tI~AALLHDvvEDt~~~T~eeI~~~FG~~ 219 (885)
.+..++.+|+.||.++|.||+|++ |+|||.||++||.|| .++++ |.++++||||||++|||+ +|.++|++.||++
T Consensus 2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~-~t~e~i~~~FG~~ 80 (178)
T 3nr1_A 2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTD-TTLDEVELHFGAQ 80 (178)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSS-CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHCHH
T ss_conf 579999999999999713576889999968999999999999872899899999999220885289-9999999997999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCCCCCH
Q ss_conf 9999964101233453222357730454438999999984347841882214447853221048999733
Q 002745 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ 289 (885)
Q Consensus 220 Va~LV~gvTki~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~D~RviLIKLADRLhNmrtL~~~~~~kq 289 (885)
|+.||+|||++..+.... ....|.+++| ..|+||++||||||+||||++..++++.+
T Consensus 81 Va~lV~gvTk~~~~~~~~-------~~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~~ 137 (178)
T 3nr1_A 81 VRRLVEEVTDDKTLPKLE-------RKRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEGW 137 (178)
T ss_dssp HHHHHHHTCCCTTSCHHH-------HHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHCCCCCHHH-------HHHHHHHHHH------HCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999998255446655-------7999999987------37926699899999988988653793014
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=1.00 E-value=1 Score=151.14 Aligned_cols=71 Identities=42% Similarity=0.822 Sum_probs=68.4
Q ss_pred CCCCCCCEEEECCCCCEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCEEEEEECCCC
Q ss_conf 11238660765689965726999858677773161001434799998976398766799996999963787
Q 002745 558 RDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNAL 628 (885)
Q Consensus 558 ~~l~~~~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~ 628 (885)
.|||+++||||||+|++++||+|+|++||||+||+++|++|++|+|||++|+|+++|++||+|||+|+++.
T Consensus 1 ~~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~ 71 (78)
T 3hvz_A 1 MDLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp -----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC--
T ss_pred CCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEECCEECCCCCCCCCCCEEEEECCCCC
T ss_conf 98767607998899998990599989999998655321416999999999589833699999999826754
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=102.22 Aligned_cols=66 Identities=27% Similarity=0.396 Sum_probs=59.7
Q ss_pred CCEEEEC-CCCC------EEEC-CCCCCHHHHHHHCCCCCCCCEEEEEE-------CCEECCCCCCCCCCCEEEEEECCC
Q ss_conf 6607656-8996------5726-99985867777316100143479999-------897639876679999699996378
Q 002745 563 SRVFVFT-PRGE------IKNL-PKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIITYNA 627 (885)
Q Consensus 563 ~~V~Vft-P~G~------i~~l-p~gsT~lDfAy~ih~~ig~~~~~akv-------Ng~~v~l~~~L~~gd~VeIit~~~ 627 (885)
+.|.||| |+|. ++.| |+|+|+.||||+||+++++.+..|.| ||+.|+++++|++||+|+|++.++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCS
T ss_pred CEEEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEECCCCCEECCCCEEEEEECCC
T ss_conf 91999758999977889988983699999999999999998406378995345339998989986826899999996788
Q ss_pred C
Q ss_conf 7
Q 002745 628 L 628 (885)
Q Consensus 628 ~ 628 (885)
.
T Consensus 90 ~ 90 (93)
T 2eki_A 90 P 90 (93)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 8
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=1.00 E-value=1 Score=100.92 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=60.7
Q ss_pred CCEEEEC---------CCC----CEEECCCCCCHHHHHHHCCCCCCCCEEEE--EECCEECCCCCCCCCCCEEEEEECC
Q ss_conf 6607656---------899----65726999858677773161001434799--9989763987667999969999637
Q 002745 563 SRVFVFT---------PRG----EIKNLPKGATVVDYAYMIHTEIGNKMVAA--KVNGNLVSPTHVLANAEVVEIITYN 626 (885)
Q Consensus 563 ~~V~Vft---------P~G----~i~~lp~gsT~lDfAy~ih~~ig~~~~~a--kvNg~~v~l~~~L~~gd~VeIit~~ 626 (885)
+.|+||| |+| +.+.+|+|+|+.||||.||+++++.+++| .+||+.++++|+|++||+|+|+|.+
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC-
T ss_pred CCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEECC
T ss_conf 9758985066554567767634504895898989999887769998641326783199875897451699889999688
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=1.00 E-value=1 Score=93.94 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=60.4
Q ss_pred CEEEECCCCCEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCEEEEEECC
Q ss_conf 607656899657269998586777731610014347999989763987667999969999637
Q 002745 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYN 626 (885)
Q Consensus 564 ~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNg~~v~l~~~L~~gd~VeIit~~ 626 (885)
++.|.+|+|+++++|.|+|+.|||+.+|+.+++.+++|+|||++++|+++|++|+.||++|.+
T Consensus 1 ~i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~ 63 (224)
T 1tke_A 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAK 63 (224)
T ss_dssp CCEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTT
T ss_pred CEEEEECCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCEEECCCEECCCCCEEEEEECC
T ss_conf 927992899789925999999999997543255449999999993063674899869998457
No 10
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=1.00 E-value=1 Score=90.15 Aligned_cols=66 Identities=45% Similarity=0.831 Sum_probs=62.4
Q ss_pred CEEEECCCCCEEECCCCCCHHHHHHHCCCCCCCCEEEEEECCEECCCCCCCCCCCEEEEEECCCCC
Q ss_conf 607656899657269998586777731610014347999989763987667999969999637878
Q 002745 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALS 629 (885)
Q Consensus 564 ~V~VftP~G~i~~lp~gsT~lDfAy~ih~~ig~~~~~akvNg~~v~l~~~L~~gd~VeIit~~~~~ 629 (885)
+|+|++|+|+.+++|.|+|+.|+|+.++++++..+++++|||++++++++|++||.|||+|..+..
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred EEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCEEEEEECCCCC
T ss_conf 699993899989907999699999987040422569999999990897693998999999789975
Done!