Query 002746
Match_columns 885
No_of_seqs 496 out of 5486
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 19:18:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002746.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1459-1463//hhsearch_pdb/002746hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 480.4 37.6 451 11-474 92-553 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 434.6 33.5 467 3-485 208-751 (768)
3 3t6q_A CD180 antigen; protein- 1.0 1 1 430.4 36.5 469 2-475 40-563 (606)
4 3j0a_A TOLL-like receptor 5; m 1.0 1 1 425.6 32.9 457 7-477 15-565 (844)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 420.3 39.7 469 2-475 32-625 (680)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 409.5 33.5 458 5-476 20-562 (606)
7 3t6q_A CD180 antigen; protein- 1.0 1 1 407.6 36.0 453 3-470 19-534 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 402.0 31.2 440 2-455 31-566 (844)
9 1ziw_A TOLL-like receptor 3; i 1.0 1 1 399.3 38.1 457 4-471 12-516 (680)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 398.0 34.1 442 2-455 39-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=480.44 Aligned_cols=451 Identities=31% Similarity=0.432 Sum_probs=339.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCH--HHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCC-
Q ss_conf 881234887786885899965433722--22079999699735862556785243308988878985787334457956-
Q 002746 11 IPPEFSKLRRLRHLQLDGNNLHGQIPE--SLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFTGKIPEE- 87 (885)
Q Consensus 11 ~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~- 87 (885)
++..|..+++|++|++++|.+.+.+|. .++.+++|++|++++|.+.+.+|...+.++++|++|++++|.+....+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 70332457889989898985787078967872788999898968826774797785638899989897983588587155
Q ss_pred --CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf --789999959984265276668712224765258413653468898465407999868877787566888888865444
Q 002746 88 --IGNCPNLWTLSLYNNQLTGQLPASLINTSMYNLDVEYNHLSGELPSDIMSKLPSLTYLHLSYNNMVSHDDNTNLVPFF 165 (885)
Q Consensus 88 --~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~ 165 (885)
+.++++|++|++++|+++...+. ...++|++|++++|.+.+.+|. +..+++|++|++++|.+.... .
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~--------~ 240 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDF--------S 240 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCH--------H
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCC--------C
T ss_conf 6643589889898978803465784-5478689898928827887711--126999998979488587816--------5
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHCCCCC
Q ss_conf 56788898968980273057447884466531489825873345688365388-88884662265566542021038899
Q 002746 166 NSLGNCTDLEELELAGMDLGGTLPDSIGRLNLTQLLLQENKITGSIPPHIGNL-SNLISLNLSSNLLSGTISAEISWLSQ 244 (885)
Q Consensus 166 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~i~~~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~ 244 (885)
.++..+++|+.|++++|.+.+..|.. ...+|+.|++.+|.+++.+|..+... ++|++|++++|.+++..|..|..+++
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 77744888898989888665716724-36878989791785577258888844686889989689677842367755877
Q ss_pred CCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEE
Q ss_conf 98576666525334760-000889877032124325566773223777-5429983577447889946689--9998789
Q 002746 245 LEQLFLSHNLFSGEIPA-ALGKLHHLGLLDLSFNKLSGEIPVSLGNLV-QIYSLFLNNNQLSRSIPPTLGR--CTDLYKL 320 (885)
Q Consensus 245 L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L 320 (885)
|++|++++|.+.+..|. .+..+++|+.|++++|++.+..|..+..++ +|+.|++++|++.+..+..+.. +++|+.|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred CCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEE
T ss_conf 66778978852573797887248888788484784376230989863227719986278747876766653324776189
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 77688475568966568633013442267867798501002777764650478733443532356676452899437855
Q 002746 321 DLSYNRLTGSIPAEISGIREIRIFLNLSHNQLEGPLPIELSKLENVQEIDLSSNKFTGNIFIQISNCIAVRLINISHNAL 400 (885)
Q Consensus 321 ~l~~N~l~~~~~~~~~~l~~l~~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~l~~n~l 400 (885)
++++|++++.+|..+..++.| +.|++++|.+.+..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSEL-VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTC-CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCCCCCCCCHHHHCCCCC-CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCC
T ss_conf 897784654248777568987-9898958846685467774499889898978815471897882877732999019951
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 798888435534433011357420322583237876022997336626102899-98668887544236765436
Q 002746 401 QGNLPDSLGDLKNLEAIDVSGNHLSGIIPISLNKIHTLTFINLSFNEFKGMIPS-GGIFNSATKMSFVGNQHLCG 474 (885)
Q Consensus 401 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~~c~ 474 (885)
.+..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|. .+.+.++..+.+.+|+..+.
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC
T ss_conf 375887881699899897539951896876885689999898978943374887770889899898988846882
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=434.56 Aligned_cols=467 Identities=35% Similarity=0.571 Sum_probs=291.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 77854444881234887786885899965433722220799996997358625567852433089888789857873344
Q 002746 3 VDNHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFTG 82 (885)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~~ 82 (885)
.+|++++.+|. |..+++|+.|++++|.+.+..|.+|..+++|++|++++|.+.+.+|.. .+++|++|++++|.+..
T Consensus 208 s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 208 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEE
T ss_pred CCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCCCCCCC
T ss_conf 28827887711-126999998979488587816577744888898989888665716724---36878989791785577
Q ss_pred CCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCCCC
Q ss_conf 579567899-99959984265276668712224-765258413653468898465407999868877787566-888888
Q 002746 83 KIPEEIGNC-PNLWTLSLYNNQLTGQLPASLIN-TSMYNLDVEYNHLSGELPSDIMSKLPSLTYLHLSYNNMV-SHDDNT 159 (885)
Q Consensus 83 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~N~i~-~~~~~~ 159 (885)
..|..+.++ ++|+.|++++|+++...+..+.. ++|++|++++|.+.+.+|...|..+++|++|++++|.+. .++.
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-- 361 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-- 361 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT--
T ss_pred CCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH--
T ss_conf 258888844686889989689677842367755877667789788525737978872488887884847843762309--
Q ss_pred CCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--C-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 8654445678889-8968980273057447884466--5-3148982587334568836538888884662265566542
Q 002746 160 NLVPFFNSLGNCT-DLEELELAGMDLGGTLPDSIGR--L-NLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTI 235 (885)
Q Consensus 160 ~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~--~-~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 235 (885)
.+..+. +|+.|++++|.+.+..+..+.. . +|+.|++.+|.+++..|..+..+++|++|++++|.+++..
T Consensus 362 -------~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 362 -------SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp -------THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred -------HHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf -------8986322771998627874787676665332477618989778465424877756898798989588466854
Q ss_pred CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 02103889998576666525334760000889877032124325566773223777542998357744788994668999
Q 002746 236 SAEISWLSQLEQLFLSHNLFSGEIPAALGKLHHLGLLDLSFNKLSGEIPVSLGNLVQIYSLFLNNNQLSRSIPPTLGRCT 315 (885)
Q Consensus 236 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 315 (885)
|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|++|++++|++.+..|..+..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 67774499889898978815471897882877732999019951375887881699899897539951896876885689
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHH------------------------------------
Q ss_conf 98789776884755689665686330134422678677985010------------------------------------
Q 002746 316 DLYKLDLSYNRLTGSIPAEISGIREIRIFLNLSHNQLEGPLPIE------------------------------------ 359 (885)
Q Consensus 316 ~L~~L~l~~N~l~~~~~~~~~~l~~l~~~L~L~~N~l~~~~~~~------------------------------------ 359 (885)
+|+.|++++|++++.+|..+..++.| +.|++++|.+.+.+|..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCEEECCCCCCCCCCCHHHCCCCCC-CEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99989897894337488777088989-98989888468827957860421223201345421111344432222332221
Q ss_pred ----------------------------------HCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf ----------------------------------0277776465047873344353235667645289943785579888
Q 002746 360 ----------------------------------LSKLENVQEIDLSSNKFTGNIFIQISNCIAVRLINISHNALQGNLP 405 (885)
Q Consensus 360 ----------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 405 (885)
+..+++|+.|++++|++++.+|..+..++.|+.|++++|.+++.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 00135563232002321100113310046274334033566579785880155587788414157878486880388789
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84355344330113574203225832378760229973366261028999866888754423676543679999998998
Q 002746 406 DSLGDLKNLEAIDVSGNHLSGIIPISLNKIHTLTFINLSFNEFKGMIPSGGIFNSATKMSFVGNQHLCGTVPGMPICPPK 485 (885)
Q Consensus 406 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~~~~~~~ 485 (885)
..+..++.|+.||+++|++++.+|..+..+++|+.|++++|++++.+|..+.+.++...++.||+++||.+.. .|...
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~~ 751 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDPS 751 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCSC
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC--CCCCC
T ss_conf 6784777899898978802386886775788789787968815560899601024897775698321088776--78887
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=430.36 Aligned_cols=469 Identities=21% Similarity=0.229 Sum_probs=407.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
Q ss_conf 87785444488123488778688589996543372222079999699735862556785243308988878985787334
Q 002746 2 LVDNHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFT 81 (885)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~ 81 (885)
|.+|++++..+.+|.++++|++|++++|.+..+.|++|+.+++|++|++++|.+. .++...|.++++|++|++++|++.
T Consensus 40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCS
T ss_pred CCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 1587347179667256766528978898355248511368433676448898565-458655234421537652126766
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCC--EEECCCCCCCCCCCC
Q ss_conf 457956789999959984265276668-71222476525841365346889846540799986--887778756688888
Q 002746 82 GKIPEEIGNCPNLWTLSLYNNQLTGQL-PASLINTSMYNLDVEYNHLSGELPSDIMSKLPSLT--YLHLSYNNMVSHDDN 158 (885)
Q Consensus 82 ~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~--~L~L~~N~i~~~~~~ 158 (885)
.+.+..|.++++|++|++++|+++... +..+..++|++|++++|.+. .++...|..+++|+ .|++++|.+..+...
T Consensus 119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~ 197 (606)
T 3t6q_A 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197 (606)
T ss_dssp CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTT
T ss_pred CCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHHHHCCCCEEEEECCCCCCCCCCHH
T ss_conf 578101223782238988798341147654568765687776568445-5496563322156403896679814754866
Q ss_pred CCCCC-----------------------------------------CCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 88654-----------------------------------------445678889--89689802730574478844665
Q 002746 159 TNLVP-----------------------------------------FFNSLGNCT--DLEELELAGMDLGGTLPDSIGRL 195 (885)
Q Consensus 159 ~~~~~-----------------------------------------~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~~~ 195 (885)
..... ....|..+. +++.+++++|.+.+..+..+..+
T Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l 277 (606)
T 3t6q_A 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277 (606)
T ss_dssp TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCC
T ss_conf 73001001355677266777765133564422002011026412268667430320750599944576585577774456
Q ss_pred -CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEE
Q ss_conf -3148982587334568836538888884662265566542021038899985766665253347-60000889877032
Q 002746 196 -NLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTISAEISWLSQLEQLFLSHNLFSGEI-PAALGKLHHLGLLD 273 (885)
Q Consensus 196 -~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~ 273 (885)
+|+.|++++|.++ .+|..+..+++|++|++++|.++...+..+..+++|++|++++|.+.... +..+..+++|+.|+
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE
T ss_conf 67888956288267-77821416546888977168768676023301576898889899744434624550667589887
Q ss_pred CCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCEEEEEECCCC
Q ss_conf 1243255667--73223777542998357744788994668999987897768847556896-65686330134422678
Q 002746 274 LSFNKLSGEI--PVSLGNLVQIYSLFLNNNQLSRSIPPTLGRCTDLYKLDLSYNRLTGSIPA-EISGIREIRIFLNLSHN 350 (885)
Q Consensus 274 Ls~N~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~l~~~L~L~~N 350 (885)
+++|.+.+.. +..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++.+..+. .+..++.| +.|++++|
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n 435 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHS 435 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTC
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCC-CEEECCCC
T ss_conf 88996664567522105678889898989967757888734774577687888867775652124176558-88989898
Q ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCC---CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 677985010027777646504787334435---32356676452899437855798888435534433011357420322
Q 002746 351 QLEGPLPIELSKLENVQEIDLSSNKFTGNI---FIQISNCIAVRLINISHNALQGNLPDSLGDLKNLEAIDVSGNHLSGI 427 (885)
Q Consensus 351 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 427 (885)
.+.+..|..+..+++|+.|++++|++++.. +..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
T ss_conf 55776877873788788898989988854345431240488766887999966706864632656788898989806868
Q ss_pred CCCCCCCCCEECEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 5832378760229973366261028999-86688875442367654367
Q 002746 428 IPISLNKIHTLTFINLSFNEFKGMIPSG-GIFNSATKMSFVGNQHLCGT 475 (885)
Q Consensus 428 ~~~~~~~l~~l~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~n~~~c~~ 475 (885)
.|..+..++.| .|++++|.+++.+|.. ..+.++..+.+.+|++.|++
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 96684756651-8987689414268766256778788967799861667
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=425.60 Aligned_cols=457 Identities=20% Similarity=0.242 Sum_probs=263.9
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 44448812348877868858999654337222207999969973586255678524330898887898578733445795
Q 002746 7 LFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFTGKIPE 86 (885)
Q Consensus 7 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 86 (885)
-.+.+|. -.+++++|+|++|.|..+.+.+|..+++|++|++++|...+.++...|.++++|++|+|++|.+....+.
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCC---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 9777898---9998688888778678329667766213708867899774441977853787788887989958531976
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCC--CCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCC---
Q ss_conf 6789999959984265276668712--224-7652584136534688984654079998688777875668888888---
Q 002746 87 EIGNCPNLWTLSLYNNQLTGQLPAS--LIN-TSMYNLDVEYNHLSGELPSDIMSKLPSLTYLHLSYNNMVSHDDNTN--- 160 (885)
Q Consensus 87 ~~~~l~~L~~L~L~~n~l~~~~~~~--~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--- 160 (885)
+|.++++|++|+|++|.++...+.. +.. ++|++|++++|.+.+..+...|+++++|++|++++|.+........
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCC
T ss_conf 71578665870176788973404676455667999888987864232566557638898989898984776678875355
Q ss_pred ----CC-----------CCCCCCCCCC------CCCEEEECCCCCCCCCCCCCCC-------------------------
Q ss_conf ----65-----------4445678889------8968980273057447884466-------------------------
Q 002746 161 ----LV-----------PFFNSLGNCT------DLEELELAGMDLGGTLPDSIGR------------------------- 194 (885)
Q Consensus 161 ----~~-----------~~~~~~~~l~------~L~~L~l~~~~l~~~~~~~~~~------------------------- 194 (885)
+. .....+..+. +|+.|++++|.+....+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 67750357897886665545533223772235740079657886865677888764274410011212122346644456
Q ss_pred --------------CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
Q ss_conf --------------531489825873345688365388888846622655665420210388999857666652533476
Q 002746 195 --------------LNLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTISAEISWLSQLEQLFLSHNLFSGEIP 260 (885)
Q Consensus 195 --------------~~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 260 (885)
.+++.|++++|.+.+..+..|..+++|+.|++++|.++...+..|..+++|++|++++|.+....+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred CCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCH
T ss_conf 68898556525554786189897994551586345258999999897981898796883688899989898997885187
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC------
Q ss_conf 00008898770321243255667732237775429983577447889946689999878977688475568966------
Q 002746 261 AALGKLHHLGLLDLSFNKLSGEIPVSLGNLVQIYSLFLNNNQLSRSIPPTLGRCTDLYKLDLSYNRLTGSIPAE------ 334 (885)
Q Consensus 261 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~------ 334 (885)
..|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+.. .+ .+++|+.|++++|+++ .+|..
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~ 405 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKINLTANL 405 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCCCTTCCE
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CC----CCCCCCHHCCCCCCCC-CCCCCCCCCCE
T ss_conf 884689999989898998776286661378889998898997786-16----8898232005899723-14554554312
Q ss_pred ----------------CCCCCCEEEEEECCCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-----CCCCCCCCCCCCCCE
Q ss_conf ----------------568633013442267867798501-0027777646504787334-----435323566764528
Q 002746 335 ----------------ISGIREIRIFLNLSHNQLEGPLPI-ELSKLENVQEIDLSSNKFT-----GNIFIQISNCIAVRL 392 (885)
Q Consensus 335 ----------------~~~l~~l~~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~L~~ 392 (885)
+..+++| +.|++++|.+.+..+. .+..+++|+.|++++|.++ +..+..|.++++|+.
T Consensus 406 L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 406 IHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484 (844)
T ss_dssp EECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEEC
T ss_pred EECCCCCCCCCCHHHHHHCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCE
T ss_conf 21456753457556665127766-66667787125555433356687310024777736441013553555447553657
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99437855798888435534433011357420322583237876022997336626102899986688875442367654
Q 002746 393 INISHNALQGNLPDSLGDLKNLEAIDVSGNHLSGIIPISLNKIHTLTFINLSFNEFKGMIPSGGIFNSATKMSFVGNQHL 472 (885)
Q Consensus 393 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~n~~~ 472 (885)
|++++|.+++..+..|..+++|+.|++++|+|++..+..+. ++|+.|++++|.+++.+|. .+.++..+.+.+||+.
T Consensus 485 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred EECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHH--HHCCCCEEEECCCCCC
T ss_conf 77889856553955704501221569999978745710110--0455888988847888966--8377688993199702
Q ss_pred CCCCC
Q ss_conf 36799
Q 002746 473 CGTVP 477 (885)
Q Consensus 473 c~~~~ 477 (885)
|++..
T Consensus 561 C~c~~ 565 (844)
T 3j0a_A 561 CECEL 565 (844)
T ss_dssp CSSSC
T ss_pred CCCCC
T ss_conf 53661
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=420.28 Aligned_cols=469 Identities=24% Similarity=0.254 Sum_probs=244.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
Q ss_conf 87785444488123488778688589996543372222079999699735862556785243308988878985787334
Q 002746 2 LVDNHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFT 81 (885)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~ 81 (885)
|.+|++++..+.+|.++++|+.|++++|.+..+.|++|+.+++|++|++++|.++ .+|...|.++++|++|++++|.+.
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 9899778759788717876758878899648569778740667688889998567-568545303888898989899668
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHC--CCCCCCEEECCCCCCCCCCCC
Q ss_conf 457956789999959984265276668712224-76525841365346889846540--799986887778756688888
Q 002746 82 GKIPEEIGNCPNLWTLSLYNNQLTGQLPASLIN-TSMYNLDVEYNHLSGELPSDIMS--KLPSLTYLHLSYNNMVSHDDN 158 (885)
Q Consensus 82 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~--~l~~L~~L~L~~N~i~~~~~~ 158 (885)
.+.+..|.++++|++|++++|+++...+..+.. ++|++|++++|.+. .++...+. .+++|++|++++|.+..+...
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCC-CBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 539667415678888989899524667211124556777974588436-5297886244666321798889825655815
Q ss_pred CCCCCCCCCCC---------------------CCCCCCEEEECCCCCCCCCCCCCCCC---CCCEEECCCCCCCCCCCCC
Q ss_conf 88654445678---------------------88989689802730574478844665---3148982587334568836
Q 002746 159 TNLVPFFNSLG---------------------NCTDLEELELAGMDLGGTLPDSIGRL---NLTQLLLQENKITGSIPPH 214 (885)
Q Consensus 159 ~~~~~~~~~~~---------------------~l~~L~~L~l~~~~l~~~~~~~~~~~---~L~~L~l~~n~i~~~~p~~ 214 (885)
... ....+. ..++|+.|++++|.+.+..+..+..+ +|+.|++++|.+++..+..
T Consensus 190 ~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 190 CFH--AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp GGG--GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred HHH--HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 553--223445543056646805677787775315100887457743646866751467677888778788767568021
Q ss_pred CCCCCCCCEEECCCCCCCCCCC---------------------------------------------------------H
Q ss_conf 5388888846622655665420---------------------------------------------------------2
Q 002746 215 IGNLSNLISLNLSSNLLSGTIS---------------------------------------------------------A 237 (885)
Q Consensus 215 l~~l~~L~~L~l~~n~l~~~~~---------------------------------------------------------~ 237 (885)
|..+++|++|++++|.+.+..+ .
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHH
T ss_conf 16741056855778856765865626788855773633132133333554543865624677788887989826878855
Q ss_pred HHCCCCCCCEEECCC----------------------------CCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCC
Q ss_conf 103889998576666----------------------------5253347600008898770321243255667-73223
Q 002746 238 EISWLSQLEQLFLSH----------------------------NLFSGEIPAALGKLHHLGLLDLSFNKLSGEI-PVSLG 288 (885)
Q Consensus 238 ~~~~l~~L~~L~L~~----------------------------n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~ 288 (885)
.|..+++|++|++++ |.+....+..|..+++|+.|++++|++.+.. +..|.
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
T ss_conf 74065687289887980144323532202455686766889999777677544207788888867787575435755325
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCC
Q ss_conf 7775429983577447889946689999878977688475--56896656863301344226786779850100277776
Q 002746 289 NLVQIYSLFLNNNQLSRSIPPTLGRCTDLYKLDLSYNRLT--GSIPAEISGIREIRIFLNLSHNQLEGPLPIELSKLENV 366 (885)
Q Consensus 289 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~l~~~L~L~~N~l~~~~~~~~~~l~~L 366 (885)
++++|++|++++|++....+..|..+++|+.|++++|.+. +.+|..+..+++| +.|++++|.+++..+..+..+++|
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 7546127844899754227645500754310110146442256677645557878-999899998776794463455346
Q ss_pred CEEECCCCCCCCCCC--------CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 465047873344353--------235667645289943785579888843553443301135742032258323787602
Q 002746 367 QEIDLSSNKFTGNIF--------IQISNCIAVRLINISHNALQGNLPDSLGDLKNLEAIDVSGNHLSGIIPISLNKIHTL 438 (885)
Q Consensus 367 ~~L~l~~N~l~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l 438 (885)
+.|++++|++++... ..+.++++|+.|++++|.+....+..|..+++|+.|++++|++++..+..|..+++|
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 88858899730000000467741423379988888899997887797773466675223899997776797683789888
Q ss_pred CEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCC
Q ss_conf 299733662610289998--6688875442367654367
Q 002746 439 TFINLSFNEFKGMIPSGG--IFNSATKMSFVGNQHLCGT 475 (885)
Q Consensus 439 ~~l~l~~N~l~~~~~~~~--~~~~~~~~~~~~n~~~c~~ 475 (885)
+.|++++|.+++.++... .+.++..+.+.+|||.|++
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 889899996870596683011466577983189702577
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=409.52 Aligned_cols=458 Identities=19% Similarity=0.189 Sum_probs=325.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC
Q ss_conf 85444488123488778688589996543372222079999699735862556785243308988878985787334457
Q 002746 5 NHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFTGKI 84 (885)
Q Consensus 5 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 84 (885)
++..+.+|..+. +++++|++++|.+..+.+.+|..+++|++|++++|.++ .++...|.++++|++|++++|.+....
T Consensus 20 ~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 20 DQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp TSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred CCCCCCCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC-CCCHHHHHCHHHCCEEECCCCCCCCCC
T ss_conf 888451898888--87678878889757737545557766748868877366-439777306010688678798563048
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCCCCCCCC--
Q ss_conf 956789999959984265276668712224-765258413653468-8984654079998688777875668888888--
Q 002746 85 PEEIGNCPNLWTLSLYNNQLTGQLPASLIN-TSMYNLDVEYNHLSG-ELPSDIMSKLPSLTYLHLSYNNMVSHDDNTN-- 160 (885)
Q Consensus 85 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~-~i~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-- 160 (885)
|..|.++++|++|++++|+++...+..+.. .+|++|++++|.+.+ .+|. .|.++++|++|++++|.+..+.....
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHH-HHHHCCCCCEEECCCCCCEECCHHHHHH
T ss_conf 522078653788870377555445113489887798968788523253068-6732677778876688531057334121
Q ss_pred -----------------CCCCCCCCCCCCCCCEEEECCCCCC--------------------------------------
Q ss_conf -----------------6544456788898968980273057--------------------------------------
Q 002746 161 -----------------LVPFFNSLGNCTDLEELELAGMDLG-------------------------------------- 185 (885)
Q Consensus 161 -----------------~~~~~~~~~~l~~L~~L~l~~~~l~-------------------------------------- 185 (885)
............+|+.|++++|.+.
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred HHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 20342002430046897532571105676043352467856166778886026656523141111036774102681776
Q ss_pred --------------------CCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCC
Q ss_conf --------------------4478844665-3148982587334568836538888884662265566542021038899
Q 002746 186 --------------------GTLPDSIGRL-NLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTISAEISWLSQ 244 (885)
Q Consensus 186 --------------------~~~~~~~~~~-~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 244 (885)
+..+. +..+ +|+.+++.+|.+. .+| .+..+++|++|++++|.+. ..| .+ .+++
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~ 329 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPF 329 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSS
T ss_pred HHHHHCCHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCCCCCCCEEECCCCCCC-CCC-CC-CCCC
T ss_conf 6665434745012366555543222-354887898771476604-435-4334011778976466676-546-67-8875
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 985766665253347600008898770321243255667--732237775429983577447889946689999878977
Q 002746 245 LEQLFLSHNLFSGEIPAALGKLHHLGLLDLSFNKLSGEI--PVSLGNLVQIYSLFLNNNQLSRSIPPTLGRCTDLYKLDL 322 (885)
Q Consensus 245 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 322 (885)
|++|++++|...... .+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+. ..+..+..+++|+.|++
T Consensus 330 L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDF 406 (606)
T ss_dssp CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCHHHCCCCCCCCEEEC
T ss_conf 564454478685310--002489888797758736877520122146775548678899530-00554068888896589
Q ss_pred CCCCCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEECCCCC
Q ss_conf 6884755689-6656863301344226786779850100277776465047873344-3532356676452899437855
Q 002746 323 SYNRLTGSIP-AEISGIREIRIFLNLSHNQLEGPLPIELSKLENVQEIDLSSNKFTG-NIFIQISNCIAVRLINISHNAL 400 (885)
Q Consensus 323 ~~N~l~~~~~-~~~~~l~~l~~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~L~~L~l~~n~l 400 (885)
++|++.+..+ ..+..++.| +.|++++|.+.+..|..+..+++|+.|++++|++++ ..+..+..+++|+.|++++|.+
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCCCCCCCHHHHHCCCCC-CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCC
T ss_conf 88705875376456462137-88989689787433555347787898989898379854677604578899898988857
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 79888843553443301135742032258323787602299733662610289998668-88754423676543679
Q 002746 401 QGNLPDSLGDLKNLEAIDVSGNHLSGIIPISLNKIHTLTFINLSFNEFKGMIPSGGIFN-SATKMSFVGNQHLCGTV 476 (885)
Q Consensus 401 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~~-~~~~~~~~~n~~~c~~~ 476 (885)
++..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++..++....++ ++..+.+.+|++.|++.
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 76486561546468989898995787487770688768988898983766687675210217488762898664776
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=407.59 Aligned_cols=453 Identities=19% Similarity=0.205 Sum_probs=340.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
Q ss_conf 77854444881234887786885899965433722220799996997358625567852433089888789857873344
Q 002746 3 VDNHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFTG 82 (885)
Q Consensus 3 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~~ 82 (885)
|.+...+.+|.++.. .++.|++++|.|..+.|.+|..+++|++|++++|.+. .++...|.++++|++|++++|++..
T Consensus 19 c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 19 CENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp CTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCCCC
T ss_conf 777980628677898--6758981587347179667256766528978898355-2485113684336764488985654
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 57956789999959984265276668712224-76525841365346889846540799986887778756688888886
Q 002746 83 KIPEEIGNCPNLWTLSLYNNQLTGQLPASLIN-TSMYNLDVEYNHLSGELPSDIMSKLPSLTYLHLSYNNMVSHDDNTNL 161 (885)
Q Consensus 83 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 161 (885)
..+.+|.++++|++|++++|+++...+..+.. ++|++|++++|++. .++...+..+++|++|++++|.+..+...
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 171 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKE--- 171 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCCCCTTCCCTTCCEEECCSSCCCEECHH---
T ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCHH---
T ss_conf 58655234421537652126766578101223782238988798341-14765456876568777656844554965---
Q ss_pred CCCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCC--------------------------------------------
Q ss_conf 54445678889896--89802730574478844665--------------------------------------------
Q 002746 162 VPFFNSLGNCTDLE--ELELAGMDLGGTLPDSIGRL-------------------------------------------- 195 (885)
Q Consensus 162 ~~~~~~~~~l~~L~--~L~l~~~~l~~~~~~~~~~~-------------------------------------------- 195 (885)
.|..+++|+ .+++++|.+.+..+..+...
T Consensus 172 -----~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 172 -----DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp -----HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred -----HHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHH
T ss_conf -----633221564038966798147548667300100135567726677776513356442200201102641226866
Q ss_pred --------CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf --------314898258733456883653888888466226556654202103889998576666525334760000889
Q 002746 196 --------NLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTISAEISWLSQLEQLFLSHNLFSGEIPAALGKLH 267 (885)
Q Consensus 196 --------~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 267 (885)
+++.+++.+|.+++..+..|..+++|++|++++|.++ ..|..+..+++|++|++++|.+....+..+..++
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 743032075059994457658557777445667888956288267-7782141654688897716876867602330157
Q ss_pred CCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 8770321243255667-732237775429983577447889--9466899998789776884755689665686330134
Q 002746 268 HLGLLDLSFNKLSGEI-PVSLGNLVQIYSLFLNNNQLSRSI--PPTLGRCTDLYKLDLSYNRLTGSIPAEISGIREIRIF 344 (885)
Q Consensus 268 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~~ 344 (885)
+|+.|++++|.+.+.. +..+..+++|++|++++|++.+.. +..+..+++|+.|++++|++.+..+..+..++.| +.
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~ 404 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL-EL 404 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC-SE
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-CE
T ss_conf 68988898997444346245506675898878899666456752210567888989898996775788873477457-76
Q ss_pred EECCCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CCCCCCCCCCCCCCCCC
Q ss_conf 42267867798501-002777764650478733443532356676452899437855798---88843553443301135
Q 002746 345 LNLSHNQLEGPLPI-ELSKLENVQEIDLSSNKFTGNIFIQISNCIAVRLINISHNALQGN---LPDSLGDLKNLEAIDVS 420 (885)
Q Consensus 345 L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~ 420 (885)
|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+. .+..+..+++|+.|+++
T Consensus 405 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp EECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECT
T ss_pred EECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECC
T ss_conf 87888867775652124176558889898985577687787378878889898998885434543124048876688799
Q ss_pred CCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 74203225832378760229973366261028999-866888754423676
Q 002746 421 GNHLSGIIPISLNKIHTLTFINLSFNEFKGMIPSG-GIFNSATKMSFVGNQ 470 (885)
Q Consensus 421 ~N~l~~~~~~~~~~l~~l~~l~l~~N~l~~~~~~~-~~~~~~~~~~~~~n~ 470 (885)
+|++++..|..+..+++|+.|++++|.+++.+|.. ..+..+ .+.+.+|.
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCC
T ss_conf 996670686463265678889898980686896684756651-89876894
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=401.98 Aligned_cols=440 Identities=23% Similarity=0.187 Sum_probs=343.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCC-CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCC
Q ss_conf 877854444881234887786885899965-4337222207999969973586255678524330898887898578733
Q 002746 2 LVDNHLFGAIPPEFSKLRRLRHLQLDGNNL-HGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFF 80 (885)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i 80 (885)
|-+|++++..+.+|.++++|+.|++++|.+ ..+.|++|+.+++|++|+|++|.+. .++...|.++++|++|+|++|.+
T Consensus 31 Ls~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l 109 (844)
T 3j0a_A 31 LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGL 109 (844)
T ss_dssp EESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCC
T ss_pred CCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCCEEECCCCCC
T ss_conf 87786783296677662137088678997744419778537877888879899585-31976715786658701767889
Q ss_pred CCCCCC--CCCCCCCCCEEECCCCCCCCCCC-CCCCC-CCCCEEECCCCCCCCCCCHHHHCCC--CC-------------
Q ss_conf 445795--67899999599842652766687-12224-7652584136534688984654079--99-------------
Q 002746 81 TGKIPE--EIGNCPNLWTLSLYNNQLTGQLP-ASLIN-TSMYNLDVEYNHLSGELPSDIMSKL--PS------------- 141 (885)
Q Consensus 81 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l--~~------------- 141 (885)
.+..+. .|.++++|+.|+|++|+++...+ ..+.. ++|++|++++|.+.+..+.. |..+ ++
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEECCSBSCC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHH-CCCCCCCCCCEEECCCCCCCC
T ss_conf 7340467645566799988898786423256655763889898989898477667887-535567750357897886665
Q ss_pred -----------------CCEEECCCCCCCCCCCCCC----------------------------CCCCCCCCCC--CCCC
Q ss_conf -----------------8688777875668888888----------------------------6544456788--8989
Q 002746 142 -----------------LTYLHLSYNNMVSHDDNTN----------------------------LVPFFNSLGN--CTDL 174 (885)
Q Consensus 142 -----------------L~~L~L~~N~i~~~~~~~~----------------------------~~~~~~~~~~--l~~L 174 (885)
|+.|++++|.+........ .......|.+ .+++
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred CCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 54553322377223574007965788686567788876427441001121212234664445668898556525554786
Q ss_pred CEEEECCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCC
Q ss_conf 689802730574478844665-3148982587334568836538888884662265566542021038899985766665
Q 002746 175 EELELAGMDLGGTLPDSIGRL-NLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTISAEISWLSQLEQLFLSHN 253 (885)
Q Consensus 175 ~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 253 (885)
+.|++++|.+.+..+..+..+ +|+.|++.+|.++...+..|.++++|++|++++|.++...+..|..+++|+.|++++|
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred CEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 18989799455158634525899999989798189879688368889998989899788518788468999998989899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----------------------CC
Q ss_conf 25334760000889877032124325566773223777542998357744788994----------------------66
Q 002746 254 LFSGEIPAALGKLHHLGLLDLSFNKLSGEIPVSLGNLVQIYSLFLNNNQLSRSIPP----------------------TL 311 (885)
Q Consensus 254 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~ 311 (885)
.+....+..|..+++|+.|++++|.++.+. .+++|+.|++++|++.. +|. .+
T Consensus 349 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~-l~~~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVT-LPKINLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp CCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCC-CCCCCTTCCEEECCSCCCCSSTTHHHH
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCC-----CCCCCCHHCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCHHHHH
T ss_conf 877628666137888999889899778616-----88982320058997231-455455431221456753457556665
Q ss_pred CCCCCCCEEECCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCC-----CCCHHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 8999987897768847556896-65686330134422678677-----98501002777764650478733443532356
Q 002746 312 GRCTDLYKLDLSYNRLTGSIPA-EISGIREIRIFLNLSHNQLE-----GPLPIELSKLENVQEIDLSSNKFTGNIFIQIS 385 (885)
Q Consensus 312 ~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~l~~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 385 (885)
..+++|+.|++++|++++..+. .+..+++| +.|++++|.+. +..+..|..+++|+.|+|++|++++..+..|.
T Consensus 423 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp TTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCC
T ss_conf 1277666666778712555543335668731-002477773644101355355544755365777889856553955704
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECEEECCCCCCCCCCCCC
Q ss_conf 6764528994378557988884355344330113574203225832378760229973366261028999
Q 002746 386 NCIAVRLINISHNALQGNLPDSLGDLKNLEAIDVSGNHLSGIIPISLNKIHTLTFINLSFNEFKGMIPSG 455 (885)
Q Consensus 386 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~l~~l~l~~N~l~~~~~~~ 455 (885)
++++|+.|++++|.+++..+..+. ++|+.|++++|++++..|..+. +++.+++++|++.+.++..
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS 566 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC
T ss_pred CHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCH
T ss_conf 501221569999978745710110--0455888988847888966837---7688993199702536618
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=399.28 Aligned_cols=457 Identities=19% Similarity=0.205 Sum_probs=374.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC
Q ss_conf 78544448812348877868858999654337222207999969973586255678524330898887898578733445
Q 002746 4 DNHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFTGK 83 (885)
Q Consensus 4 ~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~~~ 83 (885)
+++-.+.+|..+. +++++|++++|.+..+.+.+|..+++|++|++++|.+. .++...|.++++|++|++++|.+..+
T Consensus 12 s~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 12 SHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 7798052641248--88768889899778759788717876758878899648-56977874066768888999856756
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 7956789999959984265276668712224-765258413653468898465407999868877787566888888865
Q 002746 84 IPEEIGNCPNLWTLSLYNNQLTGQLPASLIN-TSMYNLDVEYNHLSGELPSDIMSKLPSLTYLHLSYNNMVSHDDNTNLV 162 (885)
Q Consensus 84 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 162 (885)
.+.+|.++++|++|++++|+++...+..+.. ++|+.|++++|.+. .++...|..+++|++|++++|.++.+....
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--- 164 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEE--- 164 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHH---
T ss_pred CHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCCHHHCCCCCCCEEECCCCCCCCCCHHH---
T ss_conf 8545303888898989899668539667415678888989899524-667211124556777974588436529788---
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC----------------------------CCCCEEECCCCCCCCCCCCC
Q ss_conf 44456788898968980273057447884466----------------------------53148982587334568836
Q 002746 163 PFFNSLGNCTDLEELELAGMDLGGTLPDSIGR----------------------------LNLTQLLLQENKITGSIPPH 214 (885)
Q Consensus 163 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----------------------------~~L~~L~l~~n~i~~~~p~~ 214 (885)
..+..+++|+.|++++|.+.+..+..+.. .+|+.|++.+|.+++..|..
T Consensus 165 ---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 165 ---LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp ---HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred ---HHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHH
T ss_conf ---62446663217988898256558155532234455430566468056777877753151008874577436468667
Q ss_pred CCCCCC--CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC---------CC
Q ss_conf 538888--8846622655665420210388999857666652533476000088987703212432556---------67
Q 002746 215 IGNLSN--LISLNLSSNLLSGTISAEISWLSQLEQLFLSHNLFSGEIPAALGKLHHLGLLDLSFNKLSG---------EI 283 (885)
Q Consensus 215 l~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---------~~ 283 (885)
+..++. |+.|++++|.++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+ +.
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCC
T ss_conf 51467677888778788767568021167410568557788567658656267888557736331321333335545438
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-C-CCCCCCC--CCEEEEEECCCCCCCCCCHHH
Q ss_conf 73223777542998357744788994668999987897768847556-8-9665686--330134422678677985010
Q 002746 284 PVSLGNLVQIYSLFLNNNQLSRSIPPTLGRCTDLYKLDLSYNRLTGS-I-PAEISGI--REIRIFLNLSHNQLEGPLPIE 359 (885)
Q Consensus 284 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~-~~~~~~l--~~l~~~L~L~~N~l~~~~~~~ 359 (885)
...|..+++|++|++++|++.+..+..|..+++|+.|++++|.+... + ...+..+ ..+ +.|++++|.+.+..|..
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L-~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL-HILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC-CEEECTTSCCCEECTTT
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCC-CEEECCCCCCCEECHHH
T ss_conf 65624677788887989826878855740656872898879801443235322024556867-66889999777677544
Q ss_pred HCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCC
Q ss_conf 0277776465047873344353-23566764528994378557988884355344330113574203--22583237876
Q 002746 360 LSKLENVQEIDLSSNKFTGNIF-IQISNCIAVRLINISHNALQGNLPDSLGDLKNLEAIDVSGNHLS--GIIPISLNKIH 436 (885)
Q Consensus 360 ~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~ 436 (885)
+..+++|+.|++++|++++..+ ..+.++++|+.|++++|.+.+..+..|..++.|+.|++++|.+. +..|..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 20778888886778757543575532575461278448997542276455007543101101464422566776455578
Q ss_pred EECEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 022997336626102899-98668887544236765
Q 002746 437 TLTFINLSFNEFKGMIPS-GGIFNSATKMSFVGNQH 471 (885)
Q Consensus 437 ~l~~l~l~~N~l~~~~~~-~~~~~~~~~~~~~~n~~ 471 (885)
+|+.|++++|.+++.++. ...+.++..+.+.+|..
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 789998999987767944634553468885889973
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=398.00 Aligned_cols=442 Identities=22% Similarity=0.218 Sum_probs=369.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCC
Q ss_conf 87785444488123488778688589996543372222079999699735862556785243308988878985787334
Q 002746 2 LVDNHLFGAIPPEFSKLRRLRHLQLDGNNLHGQIPESLALLSNLTLVTLHDNNLTGMLPISFFHNCTSLRNVDLSQNFFT 81 (885)
Q Consensus 2 ~~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~i~~~~~~~~~~~l~~L~~L~l~~n~i~ 81 (885)
|.+|++++..+.+|.++++|++|++++|.+..+.|.+|..+++|++|++++|.++ .++...|.++++|++|++++|.+.
T Consensus 39 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCC-CCCHHHCCCCCCCCEEECCCCCCC
T ss_conf 8889757737545557766748868877366439777306010688678798563-048522078653788870377555
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCC-CCCCEEECCCCCCCCCCCHHHHCCCCCCC----EEECCCCCCCCC
Q ss_conf 4579567899999599842652766-68712224-76525841365346889846540799986----887778756688
Q 002746 82 GKIPEEIGNCPNLWTLSLYNNQLTG-QLPASLIN-TSMYNLDVEYNHLSGELPSDIMSKLPSLT----YLHLSYNNMVSH 155 (885)
Q Consensus 82 ~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~----~L~L~~N~i~~~ 155 (885)
...+..|.++++|++|++++|+++. ..|..+.. ++|++|++++|++. .++...|+.+.+|+ +|++++|.+..+
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC-EECTTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCE-ECCHHHHHHHHCCCCCCCEEECCCCCCCEE
T ss_conf 4451134898877989687885232530686732677778876688531-057334121203420024300468975325
Q ss_pred CCCCC------------------------------------------------------------------------CCC
Q ss_conf 88888------------------------------------------------------------------------654
Q 002746 156 DDNTN------------------------------------------------------------------------LVP 163 (885)
Q Consensus 156 ~~~~~------------------------------------------------------------------------~~~ 163 (885)
+.... ...
T Consensus 197 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276 (606)
T ss_dssp CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG
T ss_pred CCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCC
T ss_conf 71105676043352467856166778886026656523141111036774102681776666543474501236655554
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCC
Q ss_conf 44567888989689802730574478844665-31489825873345688365388888846622655665420210388
Q 002746 164 FFNSLGNCTDLEELELAGMDLGGTLPDSIGRL-NLTQLLLQENKITGSIPPHIGNLSNLISLNLSSNLLSGTISAEISWL 242 (885)
Q Consensus 164 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~n~i~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 242 (885)
..+.+..+++|+.+++.++.+.. .+ .+... +|+.|++.+|.+. .+| .+ .+++|++|++++|..... ..+..+
T Consensus 277 ~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l 349 (606)
T 3vq2_A 277 DIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSIS--FKKVAL 349 (606)
T ss_dssp GGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEE--CCCCCC
T ss_pred CCCCCCCCCCCCEEEECCCCCHH-HH-HCCCCCCCCEEECCCCCCC-CCC-CC-CCCCCCEEECCCCCCCCC--HHHCCC
T ss_conf 32223548878987714766044-35-4334011778976466676-546-67-887556445447868531--000248
Q ss_pred CCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCE
Q ss_conf 9998576666525334--76000088987703212432556677322377754299835774478899-46689999878
Q 002746 243 SQLEQLFLSHNLFSGE--IPAALGKLHHLGLLDLSFNKLSGEIPVSLGNLVQIYSLFLNNNQLSRSIP-PTLGRCTDLYK 319 (885)
Q Consensus 243 ~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 319 (885)
++|++|++++|.+... .+..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|++.+..+ ..+..+++|+.
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 98887977587368775201221467755486788995300-05540688888965898870587537645646213788
Q ss_pred EECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 97768847556896656863301344226786779-85010027777646504787334435323566764528994378
Q 002746 320 LDLSYNRLTGSIPAEISGIREIRIFLNLSHNQLEG-PLPIELSKLENVQEIDLSSNKFTGNIFIQISNCIAVRLINISHN 398 (885)
Q Consensus 320 L~l~~N~l~~~~~~~~~~l~~l~~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~L~~L~l~~n 398 (885)
|++++|++.+..+..+..+++| +.|++++|.+.+ ..|..+..+++|+.|++++|++++..+..+.++++|+.|++++|
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSL-NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EECCCCCCCCCCHHHHCCCCCC-CEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 9896897874335553477878-989898983798546776045788998989888577648656154646898989899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EECEEECCCCCCCCCCCCC
Q ss_conf 55798888435534433011357420322583237876-0229973366261028999
Q 002746 399 ALQGNLPDSLGDLKNLEAIDVSGNHLSGIIPISLNKIH-TLTFINLSFNEFKGMIPSG 455 (885)
Q Consensus 399 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~l~~l~l~~N~l~~~~~~~ 455 (885)
.+++..|..+..+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+.++..
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 578748777068876898889898376-668767521021748876289866477648
Done!