Query 002747
Match_columns 885
No_of_seqs 304 out of 2978
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 06:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0250 DNA repair protein RAD 100.0 7.5E-67 1.6E-71 553.0 96.6 849 11-872 31-889 (1074)
2 COG1196 Smc Chromosome segrega 100.0 5.1E-53 1.1E-57 497.3 94.1 570 20-621 1-655 (1163)
3 KOG0996 Structural maintenance 100.0 6.9E-47 1.5E-51 400.0 84.6 659 16-701 80-847 (1293)
4 KOG0933 Structural maintenance 100.0 3.7E-48 8.1E-53 402.1 73.6 828 20-881 1-992 (1174)
5 KOG0964 Structural maintenance 100.0 1.8E-45 3.9E-50 380.2 81.6 674 20-731 1-765 (1200)
6 TIGR02169 SMC_prok_A chromosom 100.0 1.5E-45 3.3E-50 451.5 92.6 574 21-622 1-659 (1164)
7 KOG0018 Structural maintenance 100.0 7E-43 1.5E-47 367.2 78.5 687 19-743 1-754 (1141)
8 KOG0979 Structural maintenance 100.0 1.4E-42 3E-47 363.0 69.7 536 13-580 13-559 (1072)
9 TIGR02168 SMC_prok_B chromosom 100.0 7.5E-41 1.6E-45 412.3 97.4 248 21-277 1-256 (1179)
10 PRK02224 chromosome segregatio 100.0 3.1E-31 6.6E-36 310.8 84.9 152 20-187 1-160 (880)
11 PRK03918 chromosome segregatio 100.0 2.2E-28 4.8E-33 287.9 86.2 164 20-197 1-166 (880)
12 PRK01156 chromosome segregatio 100.0 5E-27 1.1E-31 274.6 85.0 172 20-207 1-180 (895)
13 PRK04863 mukB cell division pr 100.0 1.1E-22 2.4E-27 237.3 87.9 53 18-70 3-55 (1486)
14 COG0419 SbcC ATPase involved i 100.0 1.2E-23 2.6E-28 243.8 78.5 154 20-185 1-163 (908)
15 TIGR00606 rad50 rad50. This fa 100.0 7.5E-24 1.6E-28 254.2 72.1 141 21-170 2-165 (1311)
16 PHA02562 46 endonuclease subun 100.0 1.3E-24 2.9E-29 242.4 47.7 198 19-233 1-207 (562)
17 PRK10246 exonuclease subunit S 100.0 9.2E-20 2E-24 212.8 86.3 161 20-191 1-182 (1047)
18 TIGR00618 sbcc exonuclease Sbc 99.9 5.3E-19 1.1E-23 208.7 84.7 183 20-213 1-200 (1042)
19 TIGR02680 conserved hypothetic 99.9 4.4E-19 9.5E-24 211.1 81.4 79 20-98 2-92 (1353)
20 PRK10869 recombination and rep 99.9 7E-21 1.5E-25 204.8 40.8 140 21-175 1-151 (553)
21 TIGR00634 recN DNA repair prot 99.9 8.9E-21 1.9E-25 207.2 40.9 191 21-234 1-202 (563)
22 TIGR03185 DNA_S_dndD DNA sulfu 99.9 2.9E-18 6.2E-23 191.3 50.3 146 20-172 1-164 (650)
23 KOG0250 DNA repair protein RAD 99.9 7.1E-16 1.5E-20 166.5 63.8 641 192-872 206-882 (1074)
24 COG4913 Uncharacterized protei 99.9 2.3E-14 4.9E-19 146.0 68.5 95 17-120 12-134 (1104)
25 KOG0962 DNA repair protein RAD 99.9 2.5E-15 5.5E-20 166.6 66.2 158 19-188 1-183 (1294)
26 PF12128 DUF3584: Protein of u 99.9 1.7E-13 3.6E-18 163.4 82.2 39 37-76 13-51 (1201)
27 TIGR02169 SMC_prok_A chromosom 99.8 1.7E-14 3.7E-19 177.9 73.7 23 489-514 610-632 (1164)
28 COG1196 Smc Chromosome segrega 99.8 2.1E-14 4.5E-19 171.1 70.6 68 166-233 212-279 (1163)
29 COG0497 RecN ATPase involved i 99.8 2.3E-17 5E-22 169.3 39.0 138 21-172 1-147 (557)
30 COG4717 Uncharacterized conser 99.8 1.8E-13 4E-18 143.3 67.6 135 20-169 1-136 (984)
31 KOG0996 Structural maintenance 99.8 3.2E-13 7E-18 146.0 63.3 175 257-432 409-594 (1293)
32 COG3096 MukB Uncharacterized p 99.8 5E-11 1.1E-15 122.3 68.4 49 18-66 3-51 (1480)
33 cd03273 ABC_SMC2_euk Eukaryoti 99.8 8.1E-18 1.7E-22 165.1 16.9 148 20-172 1-156 (251)
34 KOG0964 Structural maintenance 99.8 3.5E-11 7.5E-16 127.6 63.8 46 478-531 599-644 (1200)
35 TIGR02168 SMC_prok_B chromosom 99.8 1.6E-11 3.5E-16 152.4 73.7 57 461-520 508-564 (1179)
36 PF02463 SMC_N: RecF/RecN/SMC 99.7 2.1E-17 4.5E-22 159.6 15.2 127 21-155 1-135 (220)
37 cd03275 ABC_SMC1_euk Eukaryoti 99.7 6.1E-17 1.3E-21 158.1 18.0 139 22-175 1-146 (247)
38 PRK14079 recF recombination pr 99.7 6E-16 1.3E-20 157.7 22.9 109 20-147 1-109 (349)
39 PRK00064 recF recombination pr 99.7 2.7E-16 5.8E-21 161.4 19.7 136 20-172 1-138 (361)
40 cd03242 ABC_RecF RecF is a rec 99.7 8.9E-17 1.9E-21 158.9 14.1 100 22-137 1-101 (270)
41 PF13555 AAA_29: P-loop contai 99.7 3E-17 6.5E-22 114.8 6.2 49 22-70 1-51 (62)
42 cd03241 ABC_RecN RecN ATPase i 99.7 1.5E-16 3.2E-21 157.9 13.4 113 22-147 1-120 (276)
43 PF13514 AAA_27: AAA domain 99.7 2.4E-10 5.3E-15 136.5 64.9 103 47-169 1-103 (1111)
44 cd03277 ABC_SMC5_euk Eukaryoti 99.7 7.3E-16 1.6E-20 145.2 11.7 81 20-100 1-81 (213)
45 KOG0018 Structural maintenance 99.6 1.1E-10 2.3E-15 126.0 47.2 53 259-311 295-347 (1141)
46 TIGR00611 recf recF protein. A 99.6 1.2E-13 2.7E-18 141.1 24.0 78 20-100 1-78 (365)
47 cd03239 ABC_SMC_head The struc 99.6 1.2E-15 2.7E-20 139.0 8.4 78 22-99 1-82 (178)
48 cd03272 ABC_SMC3_euk Eukaryoti 99.6 8.3E-15 1.8E-19 144.0 14.6 142 22-172 1-148 (243)
49 COG1195 RecF Recombinational D 99.6 1.3E-13 2.9E-18 135.2 20.1 101 20-136 1-102 (363)
50 cd03276 ABC_SMC6_euk Eukaryoti 99.6 5.7E-15 1.2E-19 137.7 9.2 79 22-100 1-79 (198)
51 PRK02224 chromosome segregatio 99.5 7.2E-08 1.6E-12 114.3 65.8 20 161-180 146-165 (880)
52 KOG0933 Structural maintenance 99.5 2.9E-07 6.2E-12 99.3 68.9 115 185-299 168-283 (1174)
53 PF13476 AAA_23: AAA domain; P 99.5 1.1E-13 2.4E-18 133.0 9.9 49 24-72 1-49 (202)
54 cd03279 ABC_sbcCD SbcCD and ot 99.5 1.1E-13 2.3E-18 132.0 9.6 90 20-119 1-95 (213)
55 KOG0161 Myosin class II heavy 99.5 5.7E-07 1.2E-11 107.4 65.1 230 638-872 1638-1875(1930)
56 KOG0161 Myosin class II heavy 99.5 1.2E-06 2.7E-11 104.6 66.9 18 851-868 1467-1484(1930)
57 cd03240 ABC_Rad50 The catalyti 99.4 4.6E-13 9.9E-18 125.9 11.0 90 22-120 1-92 (204)
58 PRK04863 mukB cell division pr 99.4 4.3E-06 9.3E-11 100.1 64.4 43 479-522 687-729 (1486)
59 KOG0979 Structural maintenance 99.3 1.7E-07 3.6E-12 101.5 45.1 178 186-363 181-358 (1072)
60 cd03278 ABC_SMC_barmotin Barmo 99.3 8.1E-12 1.7E-16 116.5 8.2 78 22-99 1-85 (197)
61 cd03274 ABC_SMC4_euk Eukaryoti 99.2 2.7E-11 5.8E-16 114.4 7.9 78 20-98 1-85 (212)
62 PF11398 DUF2813: Protein of u 99.0 1.9E-08 4.1E-13 101.1 18.0 51 20-71 1-51 (373)
63 COG5293 Predicted ATPase [Gene 99.0 7.9E-06 1.7E-10 80.3 34.2 51 19-71 4-65 (591)
64 COG3950 Predicted ATP-binding 99.0 2.2E-10 4.9E-15 108.1 3.2 52 20-71 1-53 (440)
65 KOG4674 Uncharacterized conser 98.9 0.00046 1E-08 81.9 60.0 107 637-747 1234-1340(1822)
66 PRK03918 chromosome segregatio 98.9 0.00057 1.2E-08 81.7 69.5 22 162-183 143-164 (880)
67 PF12128 DUF3584: Protein of u 98.9 0.00068 1.5E-08 82.3 70.1 43 18-61 7-61 (1201)
68 PF01576 Myosin_tail_1: Myosin 98.9 3.2E-10 7E-15 129.2 0.0 230 638-872 580-817 (859)
69 cd03227 ABC_Class2 ABC-type Cl 98.8 3.9E-09 8.4E-14 95.6 5.8 68 25-96 2-71 (162)
70 PF00261 Tropomyosin: Tropomyo 98.8 1.8E-05 3.9E-10 76.2 30.6 40 192-231 7-46 (237)
71 PF04310 MukB: MukB N-terminal 98.8 9.9E-09 2.2E-13 89.4 6.7 48 19-66 4-51 (227)
72 PF10174 Cast: RIM-binding pro 98.8 0.00079 1.7E-08 75.0 55.8 20 850-869 551-570 (775)
73 PF00261 Tropomyosin: Tropomyo 98.8 3.2E-05 6.9E-10 74.4 29.9 29 410-438 199-227 (237)
74 PF13166 AAA_13: AAA domain 98.7 0.00034 7.3E-09 81.3 43.1 42 29-70 1-44 (712)
75 COG4637 Predicted ATPase [Gene 98.6 1.2E-08 2.5E-13 95.9 2.4 67 20-87 1-71 (373)
76 PF07888 CALCOCO1: Calcium bin 98.6 0.001 2.3E-08 69.6 38.0 13 103-115 80-92 (546)
77 PF13175 AAA_15: AAA ATPase do 98.6 6.1E-08 1.3E-12 105.0 5.5 49 22-70 1-50 (415)
78 COG3593 Predicted ATP-dependen 98.5 8.6E-08 1.9E-12 101.0 5.3 50 20-69 1-50 (581)
79 PRK01156 chromosome segregatio 98.5 0.0066 1.4E-07 72.5 69.6 20 162-181 147-166 (895)
80 COG1106 Predicted ATPases [Gen 98.5 9E-08 1.9E-12 95.4 4.2 47 21-68 1-48 (371)
81 PF01576 Myosin_tail_1: Myosin 98.5 2.3E-08 5.1E-13 114.2 0.0 20 212-231 65-84 (859)
82 KOG4674 Uncharacterized conser 98.4 0.011 2.3E-07 70.9 64.1 25 848-872 866-890 (1822)
83 COG3910 Predicted ATPase [Gene 98.4 2E-07 4.3E-12 80.6 4.1 38 37-74 32-69 (233)
84 PF10174 Cast: RIM-binding pro 98.4 0.007 1.5E-07 67.7 62.4 24 284-307 234-257 (775)
85 COG4674 Uncharacterized ABC-ty 98.3 1.7E-07 3.6E-12 81.7 1.8 44 20-63 6-52 (249)
86 TIGR00606 rad50 rad50. This fa 98.3 0.028 6E-07 69.6 71.9 41 207-247 501-541 (1311)
87 PHA02562 46 endonuclease subun 98.3 0.0012 2.5E-08 74.5 31.8 136 157-304 143-278 (562)
88 PRK04778 septation ring format 98.3 0.011 2.3E-07 65.7 38.0 77 175-251 94-182 (569)
89 KOG0977 Nuclear envelope prote 98.3 0.0057 1.2E-07 64.3 32.4 34 200-233 42-75 (546)
90 COG4559 ABC-type hemin transpo 98.2 1.5E-06 3.3E-11 77.1 4.7 40 25-64 9-49 (259)
91 COG1120 FepC ABC-type cobalami 98.2 3.1E-06 6.8E-11 80.2 6.1 48 19-67 2-53 (258)
92 PRK11637 AmiB activator; Provi 98.2 0.0024 5.2E-08 68.4 28.5 68 637-704 45-112 (428)
93 COG4604 CeuD ABC-type enteroch 98.1 3.2E-06 6.9E-11 74.1 4.6 35 34-68 18-53 (252)
94 COG1126 GlnQ ABC-type polar am 98.0 6.9E-06 1.5E-10 73.6 5.5 31 34-64 19-50 (240)
95 COG4938 Uncharacterized conser 98.0 4.4E-06 9.5E-11 77.2 4.4 47 21-68 1-47 (374)
96 PRK04778 septation ring format 98.0 0.031 6.7E-07 62.2 35.1 52 375-426 378-429 (569)
97 COG0396 sufC Cysteine desulfur 98.0 9.1E-06 2E-10 73.6 5.9 51 17-71 1-55 (251)
98 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 8.2E-06 1.8E-10 76.9 5.9 33 34-66 21-54 (254)
99 PF07888 CALCOCO1: Calcium bin 98.0 0.03 6.6E-07 59.1 38.7 7 130-136 96-102 (546)
100 cd03296 ABC_CysA_sulfate_impor 97.9 1.3E-05 2.8E-10 78.5 5.8 45 18-63 1-49 (239)
101 PRK13539 cytochrome c biogenes 97.9 1.4E-05 3.1E-10 76.1 5.9 46 18-64 1-50 (207)
102 PRK14242 phosphate transporter 97.9 1.5E-05 3.3E-10 78.9 6.2 50 15-65 2-55 (253)
103 TIGR02680 conserved hypothetic 97.9 0.13 2.9E-06 63.4 66.4 44 637-680 740-783 (1353)
104 PRK13545 tagH teichoic acids e 97.9 1.7E-05 3.6E-10 83.6 6.2 58 5-63 6-71 (549)
105 COG0411 LivG ABC-type branched 97.9 3.7E-06 7.9E-11 77.2 0.8 36 29-64 13-52 (250)
106 COG4133 CcmA ABC-type transpor 97.9 1.5E-05 3.2E-10 69.8 4.2 35 32-66 17-52 (209)
107 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 2.5E-05 5.3E-10 69.0 5.7 31 33-63 16-47 (144)
108 PF09726 Macoilin: Transmembra 97.9 0.027 5.8E-07 62.9 30.0 31 413-443 620-650 (697)
109 PRK13540 cytochrome c biogenes 97.8 2.5E-05 5.5E-10 73.9 6.0 44 19-63 1-48 (200)
110 cd03215 ABC_Carb_Monos_II This 97.8 2E-05 4.4E-10 73.2 5.2 45 19-65 4-49 (182)
111 PRK13538 cytochrome c biogenes 97.8 2.6E-05 5.7E-10 74.1 5.9 45 19-64 1-49 (204)
112 COG4372 Uncharacterized protei 97.8 0.036 7.9E-07 54.1 29.4 102 635-741 77-178 (499)
113 COG1340 Uncharacterized archae 97.8 0.033 7.2E-07 53.4 31.5 87 745-832 161-247 (294)
114 PRK13537 nodulation ABC transp 97.8 2.8E-05 6E-10 78.7 6.2 49 14-63 2-54 (306)
115 PF12718 Tropomyosin_1: Tropom 97.8 0.0065 1.4E-07 52.6 19.7 51 651-701 12-62 (143)
116 PRK14261 phosphate ABC transpo 97.8 2.9E-05 6.3E-10 76.8 6.2 47 18-65 5-55 (253)
117 PRK11248 tauB taurine transpor 97.8 2.8E-05 6.1E-10 76.6 6.1 45 19-63 1-48 (255)
118 cd03238 ABC_UvrA The excision 97.8 1.8E-05 3.9E-10 71.9 4.2 30 33-62 11-41 (176)
119 PF09726 Macoilin: Transmembra 97.8 0.071 1.5E-06 59.7 32.6 40 405-444 619-658 (697)
120 PRK14265 phosphate ABC transpo 97.8 3.6E-05 7.8E-10 76.8 6.7 51 14-65 15-69 (274)
121 PRK11231 fecE iron-dicitrate t 97.8 2.6E-05 5.6E-10 77.2 5.7 45 18-63 1-49 (255)
122 PRK10584 putative ABC transpor 97.8 3.3E-05 7.2E-10 75.1 6.3 46 18-64 5-58 (228)
123 COG0410 LivF ABC-type branched 97.8 3.4E-05 7.4E-10 70.4 5.7 31 36-66 22-53 (237)
124 COG1117 PstB ABC-type phosphat 97.8 7E-05 1.5E-09 67.0 7.5 31 34-64 24-55 (253)
125 TIGR02673 FtsE cell division A 97.8 3E-05 6.5E-10 74.6 5.9 44 19-63 1-49 (214)
126 PRK14250 phosphate ABC transpo 97.8 3.4E-05 7.3E-10 75.6 6.2 46 18-64 2-51 (241)
127 PRK11124 artP arginine transpo 97.8 3E-05 6.5E-10 76.2 5.8 46 18-63 1-49 (242)
128 PRK14237 phosphate transporter 97.8 3.5E-05 7.6E-10 76.7 6.3 48 17-64 18-68 (267)
129 PRK14247 phosphate ABC transpo 97.8 3E-05 6.4E-10 76.7 5.7 45 19-64 3-51 (250)
130 PRK14243 phosphate transporter 97.8 3.4E-05 7.3E-10 76.6 6.1 46 19-65 10-59 (264)
131 TIGR00960 3a0501s02 Type II (G 97.8 4E-05 8.6E-10 73.8 6.1 45 19-64 1-51 (216)
132 TIGR02315 ABC_phnC phosphonate 97.8 3.5E-05 7.5E-10 75.9 5.7 31 33-63 18-49 (243)
133 PF00005 ABC_tran: ABC transpo 97.8 2.3E-05 5E-10 69.2 3.9 30 35-64 3-33 (137)
134 PRK13541 cytochrome c biogenes 97.8 4.2E-05 9.1E-10 72.1 5.9 45 19-64 1-48 (195)
135 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 3.9E-05 8.4E-10 75.0 5.8 44 20-63 2-48 (236)
136 PRK14238 phosphate transporter 97.8 4.4E-05 9.4E-10 76.1 6.3 53 14-66 19-74 (271)
137 PRK14266 phosphate ABC transpo 97.8 4E-05 8.7E-10 75.7 6.0 49 18-67 2-54 (250)
138 cd03248 ABCC_TAP TAP, the Tran 97.8 4.6E-05 1E-09 74.0 6.2 49 16-65 8-63 (226)
139 KOG1003 Actin filament-coating 97.8 0.025 5.5E-07 49.7 24.4 98 729-827 89-186 (205)
140 cd00267 ABC_ATPase ABC (ATP-bi 97.7 3.9E-05 8.6E-10 69.4 5.3 34 33-66 15-49 (157)
141 COG4942 Membrane-bound metallo 97.7 0.067 1.5E-06 54.4 28.2 54 637-690 43-96 (420)
142 KOG0977 Nuclear envelope prote 97.7 0.043 9.3E-07 58.0 27.6 42 257-298 152-193 (546)
143 PRK10895 lipopolysaccharide AB 97.7 3.5E-05 7.5E-10 75.7 5.2 45 19-64 3-51 (241)
144 PRK13638 cbiO cobalt transport 97.7 4.6E-05 1E-09 76.1 6.1 44 19-63 1-48 (271)
145 PRK09544 znuC high-affinity zi 97.7 4.1E-05 8.8E-10 75.1 5.5 44 19-63 4-51 (251)
146 TIGR03522 GldA_ABC_ATP gliding 97.7 4.3E-05 9.2E-10 77.4 5.8 46 18-63 1-49 (301)
147 PRK14262 phosphate ABC transpo 97.7 4.7E-05 1E-09 75.3 5.9 45 19-64 3-51 (250)
148 cd03262 ABC_HisP_GlnQ_permease 97.7 4.9E-05 1.1E-09 73.1 5.9 31 33-63 16-47 (213)
149 cd03265 ABC_DrrA DrrA is the A 97.7 5E-05 1.1E-09 73.3 5.9 31 33-63 16-47 (220)
150 PRK14253 phosphate ABC transpo 97.7 4.2E-05 9.1E-10 75.5 5.5 45 19-64 3-51 (249)
151 PRK14245 phosphate ABC transpo 97.7 4.7E-05 1E-09 75.2 5.7 46 18-64 2-51 (250)
152 PRK11264 putative amino-acid A 97.7 4.9E-05 1.1E-09 75.2 5.8 45 19-63 3-50 (250)
153 TIGR01288 nodI ATP-binding ABC 97.7 4.7E-05 1E-09 77.3 5.8 45 18-63 3-51 (303)
154 cd03266 ABC_NatA_sodium_export 97.7 5.9E-05 1.3E-09 72.8 6.2 31 33-63 21-52 (218)
155 cd03264 ABC_drug_resistance_li 97.7 3.7E-05 7.9E-10 73.7 4.8 32 33-64 16-47 (211)
156 PF06160 EzrA: Septation ring 97.7 0.13 2.9E-06 56.9 36.2 56 176-231 91-146 (560)
157 TIGR00972 3a0107s01c2 phosphat 97.7 5.4E-05 1.2E-09 74.6 6.1 46 19-64 1-49 (247)
158 PRK09493 glnQ glutamine ABC tr 97.7 5.2E-05 1.1E-09 74.3 5.9 46 19-64 1-49 (240)
159 PRK14274 phosphate ABC transpo 97.7 5E-05 1.1E-09 75.4 5.8 47 19-66 12-62 (259)
160 PRK14241 phosphate transporter 97.7 5.5E-05 1.2E-09 75.0 6.0 48 19-66 4-54 (258)
161 PRK10771 thiQ thiamine transpo 97.7 6.3E-05 1.4E-09 73.3 6.3 45 19-63 1-46 (232)
162 KOG0971 Microtubule-associated 97.7 0.13 2.8E-06 56.5 37.4 258 180-438 284-555 (1243)
163 PRK13641 cbiO cobalt transport 97.7 5.4E-05 1.2E-09 76.1 5.9 32 33-64 23-55 (287)
164 PRK10744 pstB phosphate transp 97.7 5.9E-05 1.3E-09 74.8 6.2 47 18-65 12-62 (260)
165 PRK10908 cell division protein 97.7 6.1E-05 1.3E-09 72.8 6.1 44 19-63 1-49 (222)
166 PRK11629 lolD lipoprotein tran 97.7 5.9E-05 1.3E-09 73.5 6.0 45 19-64 5-57 (233)
167 PRK13646 cbiO cobalt transport 97.7 5.7E-05 1.2E-09 75.9 6.0 46 18-64 1-55 (286)
168 PRK13648 cbiO cobalt transport 97.7 5.2E-05 1.1E-09 75.6 5.6 44 19-63 7-56 (269)
169 PRK11432 fbpC ferric transport 97.7 6.3E-05 1.4E-09 77.3 6.3 48 15-63 2-53 (351)
170 PRK14273 phosphate ABC transpo 97.7 5.4E-05 1.2E-09 75.0 5.7 46 19-64 7-55 (254)
171 cd03269 ABC_putative_ATPase Th 97.7 6.1E-05 1.3E-09 72.2 5.9 32 33-64 16-48 (210)
172 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.7 2.5E-05 5.4E-10 75.4 3.2 30 34-63 39-69 (224)
173 PRK14268 phosphate ABC transpo 97.7 6.7E-05 1.5E-09 74.4 6.3 49 14-63 7-59 (258)
174 PRK13547 hmuV hemin importer A 97.7 5.8E-05 1.3E-09 74.9 5.8 45 19-64 1-49 (272)
175 TIGR02211 LolD_lipo_ex lipopro 97.7 6E-05 1.3E-09 72.9 5.9 32 33-64 21-53 (221)
176 TIGR01069 mutS2 MutS2 family p 97.7 0.0015 3.2E-08 74.5 17.6 30 36-65 314-345 (771)
177 PRK14269 phosphate ABC transpo 97.7 6E-05 1.3E-09 74.1 5.9 46 18-64 1-50 (246)
178 PRK09580 sufC cysteine desulfu 97.7 5.4E-05 1.2E-09 74.8 5.6 46 19-64 1-49 (248)
179 PRK13649 cbiO cobalt transport 97.7 6.2E-05 1.3E-09 75.7 6.0 44 19-63 2-54 (280)
180 PRK13644 cbiO cobalt transport 97.7 6.5E-05 1.4E-09 75.0 6.1 46 19-65 1-51 (274)
181 PRK11701 phnK phosphonate C-P 97.7 5.2E-05 1.1E-09 75.2 5.4 31 34-64 23-54 (258)
182 PRK10247 putative ABC transpor 97.7 6.4E-05 1.4E-09 72.7 5.9 45 19-64 7-55 (225)
183 TIGR03265 PhnT2 putative 2-ami 97.7 6.3E-05 1.4E-09 77.4 6.1 47 17-64 2-52 (353)
184 PRK14236 phosphate transporter 97.7 7.7E-05 1.7E-09 74.5 6.5 49 16-64 22-73 (272)
185 PRK11831 putative ABC transpor 97.7 5.3E-05 1.1E-09 75.5 5.3 44 19-63 7-54 (269)
186 cd03224 ABC_TM1139_LivF_branch 97.7 6E-05 1.3E-09 73.0 5.6 31 33-63 16-47 (222)
187 cd03268 ABC_BcrA_bacitracin_re 97.7 6.9E-05 1.5E-09 71.6 5.9 31 33-63 16-47 (208)
188 PRK14271 phosphate ABC transpo 97.7 8.5E-05 1.8E-09 74.1 6.8 49 14-63 16-68 (276)
189 cd03261 ABC_Org_Solvent_Resist 97.7 6.5E-05 1.4E-09 73.4 5.8 31 33-63 16-47 (235)
190 cd03229 ABC_Class3 This class 97.7 7.7E-05 1.7E-09 69.0 6.0 31 33-63 16-47 (178)
191 PRK11247 ssuB aliphatic sulfon 97.7 7.1E-05 1.5E-09 73.5 6.0 46 18-64 11-60 (257)
192 cd03258 ABC_MetN_methionine_tr 97.7 5.9E-05 1.3E-09 73.6 5.5 31 33-63 21-52 (233)
193 PRK11614 livF leucine/isoleuci 97.7 5.7E-05 1.2E-09 73.9 5.4 44 19-63 5-52 (237)
194 PRK13536 nodulation factor exp 97.7 7.3E-05 1.6E-09 76.5 6.2 31 34-64 58-89 (340)
195 cd03216 ABC_Carb_Monos_I This 97.7 8.1E-05 1.8E-09 67.5 5.8 31 33-63 16-47 (163)
196 PRK10575 iron-hydroxamate tran 97.7 8.2E-05 1.8E-09 74.0 6.4 46 17-63 9-58 (265)
197 PRK10851 sulfate/thiosulfate t 97.7 6.7E-05 1.4E-09 77.3 5.9 46 18-64 1-50 (353)
198 PRK14259 phosphate ABC transpo 97.7 7.9E-05 1.7E-09 74.2 6.3 49 15-64 9-61 (269)
199 cd03259 ABC_Carb_Solutes_like 97.7 7.1E-05 1.5E-09 71.9 5.7 31 33-63 16-47 (213)
200 PRK14239 phosphate transporter 97.7 6.8E-05 1.5E-09 74.2 5.8 45 19-64 5-53 (252)
201 TIGR02323 CP_lyasePhnK phospho 97.6 6.4E-05 1.4E-09 74.4 5.5 46 19-64 3-51 (253)
202 cd03257 ABC_NikE_OppD_transpor 97.6 7.3E-05 1.6E-09 72.8 5.9 32 33-64 21-53 (228)
203 PRK14240 phosphate transporter 97.6 7.7E-05 1.7E-09 73.7 6.0 45 20-64 4-51 (250)
204 TIGR03411 urea_trans_UrtD urea 97.6 6.8E-05 1.5E-09 73.7 5.6 46 19-64 2-50 (242)
205 TIGR01166 cbiO cobalt transpor 97.6 4.7E-05 1E-09 71.5 4.3 31 33-63 8-39 (190)
206 COG2884 FtsE Predicted ATPase 97.6 5.5E-05 1.2E-09 66.3 4.2 33 34-66 19-52 (223)
207 PRK11300 livG leucine/isoleuci 97.6 6.5E-05 1.4E-09 74.6 5.5 45 19-64 5-53 (255)
208 CHL00131 ycf16 sulfate ABC tra 97.6 6.7E-05 1.4E-09 74.3 5.5 45 19-63 7-54 (252)
209 TIGR01189 ccmA heme ABC export 97.6 8E-05 1.7E-09 70.4 5.8 32 33-64 16-48 (198)
210 PF09730 BicD: Microtubule-ass 97.6 0.17 3.7E-06 56.1 54.4 47 187-233 42-88 (717)
211 cd03230 ABC_DR_subfamily_A Thi 97.6 9E-05 2E-09 68.2 5.9 31 33-63 16-47 (173)
212 COG1136 SalX ABC-type antimicr 97.6 0.0001 2.2E-09 68.6 6.1 34 34-67 22-56 (226)
213 cd03291 ABCC_CFTR1 The CFTR su 97.6 8.2E-05 1.8E-09 73.9 5.9 47 17-63 37-84 (282)
214 cd03228 ABCC_MRP_Like The MRP 97.6 0.00011 2.4E-09 67.5 6.3 33 33-65 18-51 (171)
215 PRK09536 btuD corrinoid ABC tr 97.6 7.6E-05 1.6E-09 77.7 5.8 46 18-64 2-51 (402)
216 PRK14251 phosphate ABC transpo 97.6 8.4E-05 1.8E-09 73.5 5.9 47 19-66 4-54 (251)
217 PRK15177 Vi polysaccharide exp 97.6 5E-05 1.1E-09 72.4 4.1 31 34-64 4-35 (213)
218 PRK14264 phosphate ABC transpo 97.6 0.00011 2.3E-09 74.7 6.7 45 19-64 45-93 (305)
219 cd03246 ABCC_Protease_Secretio 97.6 0.00011 2.3E-09 67.7 6.1 32 33-64 18-50 (173)
220 cd03219 ABC_Mj1267_LivG_branch 97.6 7.2E-05 1.6E-09 73.3 5.3 31 33-63 16-47 (236)
221 cd03226 ABC_cobalt_CbiO_domain 97.6 5E-05 1.1E-09 72.3 4.1 31 33-63 16-47 (205)
222 PRK13633 cobalt transporter AT 97.6 8.3E-05 1.8E-09 74.6 5.8 44 19-63 4-57 (280)
223 PRK14267 phosphate ABC transpo 97.6 8E-05 1.7E-09 73.7 5.7 32 33-64 20-52 (253)
224 PRK14235 phosphate transporter 97.6 9.2E-05 2E-09 73.7 6.1 47 19-66 19-69 (267)
225 PRK14260 phosphate ABC transpo 97.6 9.1E-05 2E-09 73.5 6.1 49 18-66 6-57 (259)
226 TIGR02324 CP_lyasePhnL phospho 97.6 9.2E-05 2E-09 71.8 5.9 32 33-64 24-56 (224)
227 PRK13640 cbiO cobalt transport 97.6 9.3E-05 2E-09 74.2 6.1 44 19-63 5-54 (282)
228 PRK13548 hmuV hemin importer A 97.6 8.7E-05 1.9E-09 73.4 5.8 45 19-64 2-50 (258)
229 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 5.4E-05 1.2E-09 73.1 4.2 32 33-64 20-52 (218)
230 PRK14248 phosphate ABC transpo 97.6 9E-05 2E-09 73.9 5.9 47 18-65 20-70 (268)
231 cd03225 ABC_cobalt_CbiO_domain 97.6 7E-05 1.5E-09 71.8 4.9 31 33-63 17-48 (211)
232 cd03260 ABC_PstB_phosphate_tra 97.6 9.8E-05 2.1E-09 71.8 6.0 34 33-66 16-50 (227)
233 PRK03695 vitamin B12-transport 97.6 4.8E-05 1.1E-09 74.7 3.9 43 20-64 1-44 (248)
234 cd03256 ABC_PhnC_transporter A 97.6 8.8E-05 1.9E-09 73.0 5.7 32 33-64 17-49 (241)
235 PRK14255 phosphate ABC transpo 97.6 9.9E-05 2.1E-09 73.0 6.1 45 19-64 5-53 (252)
236 PRK13647 cbiO cobalt transport 97.6 0.0001 2.2E-09 73.5 6.2 46 19-64 4-53 (274)
237 PRK14270 phosphate ABC transpo 97.6 9.3E-05 2E-09 73.1 5.8 45 19-64 4-52 (251)
238 PRK10253 iron-enterobactin tra 97.6 7.9E-05 1.7E-09 74.1 5.2 43 20-63 8-54 (265)
239 PRK14275 phosphate ABC transpo 97.6 8.9E-05 1.9E-09 74.4 5.6 45 19-64 39-87 (286)
240 PRK10619 histidine/lysine/argi 97.6 9.4E-05 2E-09 73.3 5.7 46 19-64 5-53 (257)
241 COG3839 MalK ABC-type sugar tr 97.6 0.0001 2.2E-09 73.3 5.8 45 19-64 3-51 (338)
242 cd03223 ABCD_peroxisomal_ALDP 97.6 6.4E-05 1.4E-09 68.4 4.2 32 33-64 17-49 (166)
243 PRK13543 cytochrome c biogenes 97.6 9.8E-05 2.1E-09 70.8 5.6 44 19-63 11-58 (214)
244 cd03263 ABC_subfamily_A The AB 97.6 6.3E-05 1.4E-09 72.7 4.3 32 33-64 18-50 (220)
245 cd03295 ABC_OpuCA_Osmoprotecti 97.6 0.00011 2.3E-09 72.3 6.0 31 33-63 17-48 (242)
246 PRK13637 cbiO cobalt transport 97.6 0.00011 2.3E-09 74.0 6.0 32 33-64 23-55 (287)
247 PRK13639 cbiO cobalt transport 97.6 0.00011 2.5E-09 73.3 6.2 44 19-63 1-49 (275)
248 TIGR01978 sufC FeS assembly AT 97.6 8.9E-05 1.9E-09 73.0 5.4 32 33-64 16-48 (243)
249 cd03293 ABC_NrtD_SsuB_transpor 97.6 6.1E-05 1.3E-09 72.7 4.1 31 33-63 20-51 (220)
250 cd03298 ABC_ThiQ_thiamine_tran 97.6 0.00012 2.6E-09 70.1 6.1 29 35-63 16-45 (211)
251 cd03283 ABC_MutS-like MutS-lik 97.6 6.6E-05 1.4E-09 70.3 4.1 28 36-63 18-46 (199)
252 PF06470 SMC_hinge: SMC protei 97.6 0.00037 8.1E-09 59.6 8.5 115 474-592 3-119 (120)
253 PRK13635 cbiO cobalt transport 97.6 0.00011 2.4E-09 73.5 6.0 44 19-63 5-54 (279)
254 PRK14252 phosphate ABC transpo 97.6 0.00012 2.6E-09 72.9 6.3 46 17-63 14-63 (265)
255 COG4138 BtuD ABC-type cobalami 97.6 6.3E-05 1.4E-09 64.5 3.5 49 18-68 2-51 (248)
256 PRK13651 cobalt transporter AT 97.6 0.00012 2.5E-09 74.0 6.1 33 33-65 23-56 (305)
257 TIGR03005 ectoine_ehuA ectoine 97.6 0.00011 2.3E-09 72.8 5.8 31 33-63 16-47 (252)
258 PRK13650 cbiO cobalt transport 97.6 0.00011 2.3E-09 73.6 5.9 45 19-64 4-55 (279)
259 PRK15056 manganese/iron transp 97.6 0.0001 2.2E-09 73.6 5.7 44 19-63 6-54 (272)
260 PF15619 Lebercilin: Ciliary p 97.6 0.063 1.4E-06 49.3 26.0 91 313-403 58-148 (194)
261 PRK11000 maltose/maltodextrin 97.6 0.00011 2.3E-09 76.5 6.0 44 19-63 3-50 (369)
262 cd03232 ABC_PDR_domain2 The pl 97.6 0.00012 2.6E-09 68.7 5.8 31 33-63 23-54 (192)
263 PRK13632 cbiO cobalt transport 97.6 0.00011 2.4E-09 73.3 5.8 44 19-63 7-56 (271)
264 PRK11153 metN DL-methionine tr 97.6 0.00011 2.4E-09 75.8 5.9 44 19-63 1-52 (343)
265 cd03301 ABC_MalK_N The N-termi 97.6 0.00012 2.7E-09 70.3 5.9 32 33-64 16-48 (213)
266 cd03369 ABCC_NFT1 Domain 2 of 97.6 0.00015 3.4E-09 69.1 6.6 46 18-64 5-56 (207)
267 cd03218 ABC_YhbG The ABC trans 97.6 0.00011 2.5E-09 71.6 5.7 32 33-64 16-48 (232)
268 TIGR02769 nickel_nikE nickel i 97.5 0.00012 2.6E-09 72.9 5.9 32 33-64 27-59 (265)
269 PRK09984 phosphonate/organopho 97.5 0.00011 2.3E-09 73.2 5.5 45 19-64 4-52 (262)
270 PRK10419 nikE nickel transport 97.5 0.00011 2.4E-09 73.1 5.6 31 33-63 28-59 (268)
271 PF09730 BicD: Microtubule-ass 97.5 0.22 4.9E-06 55.2 54.5 56 640-695 266-321 (717)
272 cd00820 PEPCK_HprK Phosphoenol 97.5 9.1E-05 2E-09 59.7 4.0 31 33-63 5-36 (107)
273 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.5 0.00013 2.8E-09 71.5 6.1 32 33-64 19-51 (238)
274 PRK13652 cbiO cobalt transport 97.5 0.00013 2.8E-09 73.1 6.1 45 19-64 3-52 (277)
275 COG4372 Uncharacterized protei 97.5 0.1 2.2E-06 51.1 31.7 16 200-215 74-89 (499)
276 TIGR00968 3a0106s01 sulfate AB 97.5 0.00013 2.9E-09 71.2 6.0 42 22-63 3-47 (237)
277 cd03214 ABC_Iron-Siderophores_ 97.5 8.2E-05 1.8E-09 69.0 4.3 31 33-63 15-46 (180)
278 COG1131 CcmA ABC-type multidru 97.5 0.00011 2.4E-09 73.5 5.5 31 34-64 22-53 (293)
279 PRK13634 cbiO cobalt transport 97.5 0.00014 3E-09 73.3 6.2 44 20-64 3-55 (290)
280 PRK14249 phosphate ABC transpo 97.5 0.00013 2.9E-09 72.0 6.0 43 20-63 5-51 (251)
281 PRK09452 potA putrescine/sperm 97.5 0.00013 2.9E-09 75.4 6.2 45 19-64 14-62 (375)
282 TIGR03410 urea_trans_UrtE urea 97.5 0.00013 2.8E-09 71.1 5.7 31 33-63 16-47 (230)
283 cd03292 ABC_FtsE_transporter F 97.5 8.2E-05 1.8E-09 71.6 4.3 31 33-63 17-48 (214)
284 TIGR02770 nickel_nikD nickel i 97.5 8.1E-05 1.8E-09 72.3 4.2 31 34-64 3-34 (230)
285 PRK09039 hypothetical protein; 97.5 0.025 5.5E-07 57.7 22.2 20 850-869 237-256 (343)
286 PRK14254 phosphate ABC transpo 97.5 0.00014 3E-09 72.9 5.9 45 19-64 39-87 (285)
287 TIGR03608 L_ocin_972_ABC putat 97.5 8.5E-05 1.8E-09 71.0 4.2 32 33-64 14-46 (206)
288 PF14662 CCDC155: Coiled-coil 97.5 0.061 1.3E-06 47.7 25.8 45 640-684 9-53 (193)
289 cd03243 ABC_MutS_homologs The 97.5 9.1E-05 2E-09 70.2 4.2 34 31-64 17-51 (202)
290 PRK11650 ugpC glycerol-3-phosp 97.5 0.00015 3.3E-09 74.7 6.1 45 19-64 3-52 (356)
291 cd03235 ABC_Metallic_Cations A 97.5 9.9E-05 2.2E-09 70.9 4.4 31 33-63 15-46 (213)
292 PRK13643 cbiO cobalt transport 97.5 0.00016 3.4E-09 72.8 6.0 45 19-64 1-54 (288)
293 cd03231 ABC_CcmA_heme_exporter 97.5 0.00017 3.6E-09 68.3 5.8 32 33-64 16-48 (201)
294 PRK10418 nikD nickel transport 97.5 0.00016 3.4E-09 71.6 5.9 45 19-64 4-51 (254)
295 cd03280 ABC_MutS2 MutS2 homolo 97.5 9.6E-05 2.1E-09 69.8 4.1 33 31-63 15-49 (200)
296 cd03300 ABC_PotA_N PotA is an 97.5 0.00016 3.5E-09 70.3 5.9 32 32-63 15-47 (232)
297 PRK11607 potG putrescine trans 97.5 0.00021 4.6E-09 74.2 6.9 44 19-63 19-66 (377)
298 COG1116 TauB ABC-type nitrate/ 97.5 0.00019 4.2E-09 66.8 5.9 31 34-64 20-51 (248)
299 PF05667 DUF812: Protein of un 97.5 0.18 3.9E-06 55.3 29.1 28 200-227 328-355 (594)
300 TIGR01184 ntrCD nitrate transp 97.5 0.0001 2.3E-09 71.5 4.4 30 34-63 2-32 (230)
301 PRK14272 phosphate ABC transpo 97.5 0.00015 3.2E-09 71.8 5.5 33 33-65 20-53 (252)
302 TIGR03740 galliderm_ABC gallid 97.5 0.00018 3.8E-09 69.7 5.9 32 33-64 16-48 (223)
303 PRK15112 antimicrobial peptide 97.5 0.00015 3.3E-09 72.1 5.6 31 33-63 29-60 (267)
304 PRK09039 hypothetical protein; 97.5 0.037 8E-07 56.5 22.6 46 639-684 46-91 (343)
305 cd03245 ABCC_bacteriocin_expor 97.5 0.0002 4.3E-09 69.3 6.2 31 33-63 20-51 (220)
306 cd03247 ABCC_cytochrome_bd The 97.5 0.00011 2.4E-09 68.0 4.3 32 33-64 18-50 (178)
307 cd03288 ABCC_SUR2 The SUR doma 97.5 0.00027 5.8E-09 70.0 7.2 47 17-64 17-69 (257)
308 TIGR01277 thiQ thiamine ABC tr 97.5 0.00019 4.2E-09 68.8 5.9 30 34-63 15-45 (213)
309 PRK14256 phosphate ABC transpo 97.5 0.00017 3.7E-09 71.3 5.7 34 33-66 20-54 (252)
310 PRK14258 phosphate ABC transpo 97.5 0.00018 3.9E-09 71.4 5.7 45 19-64 7-55 (261)
311 PRK13645 cbiO cobalt transport 97.5 0.0002 4.3E-09 72.3 6.1 32 33-64 27-59 (289)
312 PF14662 CCDC155: Coiled-coil 97.4 0.073 1.6E-06 47.2 28.1 31 408-438 158-188 (193)
313 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00021 4.6E-09 69.8 6.1 32 33-64 18-50 (234)
314 COG3638 ABC-type phosphate/pho 97.4 0.00023 5E-09 65.1 5.7 30 35-64 22-52 (258)
315 cd03290 ABCC_SUR1_N The SUR do 97.4 0.00012 2.7E-09 70.5 4.3 34 33-66 17-51 (218)
316 PRK13636 cbiO cobalt transport 97.4 0.00019 4.2E-09 72.0 5.9 45 19-64 5-54 (283)
317 cd03217 ABC_FeS_Assembly ABC-t 97.4 0.00014 3.1E-09 68.7 4.6 31 33-63 16-47 (200)
318 cd03250 ABCC_MRP_domain1 Domai 97.4 0.00013 2.7E-09 69.6 4.2 32 33-64 21-53 (204)
319 PRK13642 cbiO cobalt transport 97.4 0.00021 4.6E-09 71.5 6.0 45 19-64 4-55 (277)
320 TIGR02314 ABC_MetN D-methionin 97.4 0.00022 4.7E-09 72.9 6.1 45 19-64 1-53 (343)
321 TIGR03873 F420-0_ABC_ATP propo 97.4 0.00021 4.6E-09 70.8 5.9 31 33-63 17-48 (256)
322 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00011 2.4E-09 66.8 3.6 28 38-65 20-48 (177)
323 PRK15439 autoinducer 2 ABC tra 97.4 0.00023 5.1E-09 78.3 6.7 44 19-63 11-58 (510)
324 cd03253 ABCC_ATM1_transporter 97.4 0.00024 5.3E-09 69.5 6.1 32 33-64 17-49 (236)
325 cd03252 ABCC_Hemolysin The ABC 97.4 0.00024 5.1E-09 69.6 6.0 32 33-64 18-50 (237)
326 cd03267 ABC_NatA_like Similar 97.4 0.00013 2.9E-09 71.1 4.2 30 34-63 38-68 (236)
327 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00013 2.9E-09 72.6 4.3 31 33-63 40-71 (269)
328 cd03233 ABC_PDR_domain1 The pl 97.4 0.00014 3E-09 68.8 4.1 32 33-64 23-55 (202)
329 cd03254 ABCC_Glucan_exporter_l 97.4 0.00014 3.1E-09 70.8 4.3 31 33-63 19-50 (229)
330 PRK14244 phosphate ABC transpo 97.4 0.00018 4E-09 71.0 5.1 33 33-65 21-54 (251)
331 PRK15093 antimicrobial peptide 97.4 0.00025 5.4E-09 72.7 6.1 46 19-65 3-56 (330)
332 cd03299 ABC_ModC_like Archeal 97.4 0.00026 5.6E-09 69.0 6.0 31 33-63 15-46 (235)
333 PRK13546 teichoic acids export 97.4 0.00014 3.1E-09 71.7 4.2 30 34-63 41-71 (264)
334 PRK11147 ABC transporter ATPas 97.4 0.00019 4.1E-09 81.2 5.7 44 19-63 3-50 (635)
335 PRK11819 putative ABC transpor 97.4 0.0002 4.3E-09 79.7 5.8 32 33-64 23-55 (556)
336 TIGR02982 heterocyst_DevA ABC 97.4 0.00029 6.2E-09 68.0 6.0 31 33-63 21-52 (220)
337 TIGR01188 drrA daunorubicin re 97.4 0.00015 3.3E-09 73.5 4.2 31 33-63 9-40 (302)
338 cd03213 ABCG_EPDR ABCG transpo 97.4 0.00016 3.5E-09 67.9 4.1 32 33-64 25-57 (194)
339 PRK14263 phosphate ABC transpo 97.4 0.00024 5.2E-09 70.3 5.4 32 33-64 24-56 (261)
340 COG1122 CbiO ABC-type cobalt t 97.4 0.00033 7.2E-09 66.7 6.0 34 34-67 21-55 (235)
341 cd03244 ABCC_MRP_domain2 Domai 97.4 0.00018 3.9E-09 69.6 4.4 31 33-63 20-51 (221)
342 COG3840 ThiQ ABC-type thiamine 97.4 0.00027 5.9E-09 61.5 4.7 42 19-64 1-47 (231)
343 PF13304 AAA_21: AAA domain; P 97.3 4.5E-05 9.7E-10 78.3 0.0 24 44-67 1-24 (303)
344 PRK10938 putative molybdenum t 97.3 0.00026 5.6E-09 77.9 5.9 45 19-64 3-51 (490)
345 PRK13631 cbiO cobalt transport 97.3 0.00031 6.8E-09 71.4 6.0 45 19-64 21-74 (320)
346 cd03234 ABCG_White The White s 97.3 0.00019 4E-09 69.7 4.2 33 33-65 23-56 (226)
347 PRK14246 phosphate ABC transpo 97.3 0.00025 5.4E-09 70.0 5.0 44 19-63 10-57 (257)
348 TIGR03719 ABC_ABC_ChvD ATP-bin 97.3 0.00024 5.1E-09 79.2 5.4 44 19-63 4-52 (552)
349 PRK11022 dppD dipeptide transp 97.3 0.00033 7.2E-09 71.5 5.7 47 19-66 3-57 (326)
350 PF04849 HAP1_N: HAP1 N-termin 97.3 0.17 3.6E-06 49.3 23.1 93 739-832 210-302 (306)
351 COG4555 NatA ABC-type Na+ tran 97.3 0.00024 5.3E-09 63.0 3.8 32 37-68 22-54 (245)
352 cd03289 ABCC_CFTR2 The CFTR su 97.3 0.00043 9.3E-09 68.6 6.1 34 33-66 20-54 (275)
353 PRK15064 ABC transporter ATP-b 97.3 0.00034 7.4E-09 77.6 6.0 45 19-64 1-49 (530)
354 PF05701 WEMBL: Weak chloropla 97.3 0.44 9.6E-06 52.3 54.1 52 637-688 279-330 (522)
355 PRK10938 putative molybdenum t 97.3 0.00028 6.2E-09 77.5 5.1 45 19-64 260-308 (490)
356 PRK10762 D-ribose transporter 97.3 0.00033 7.1E-09 77.1 5.5 47 19-66 4-54 (501)
357 COG4619 ABC-type uncharacteriz 97.3 0.00036 7.7E-09 59.8 4.3 31 36-66 22-53 (223)
358 KOG0064 Peroxisomal long-chain 97.3 0.00039 8.5E-09 71.0 5.4 41 23-63 480-529 (728)
359 PRK09700 D-allose transporter 97.3 0.00023 5E-09 78.6 4.2 47 19-65 265-312 (510)
360 PF05557 MAD: Mitotic checkpoi 97.2 0.0016 3.5E-08 74.7 11.0 61 812-872 565-631 (722)
361 COG1118 CysA ABC-type sulfate/ 97.2 0.00028 6.1E-09 67.2 3.9 38 30-67 12-53 (345)
362 PRK14257 phosphate ABC transpo 97.2 0.0005 1.1E-08 70.2 6.0 46 17-63 78-129 (329)
363 PRK10636 putative ABC transpor 97.2 0.00044 9.6E-09 78.0 6.2 43 20-63 2-48 (638)
364 cd03237 ABC_RNaseL_inhibitor_d 97.2 0.00032 7E-09 68.4 4.4 24 40-63 22-46 (246)
365 PRK13549 xylose transporter AT 97.2 0.0004 8.7E-09 76.6 5.7 46 19-65 5-54 (506)
366 PRK09700 D-allose transporter 97.2 0.00041 8.9E-09 76.7 5.5 31 33-63 21-52 (510)
367 PRK15064 ABC transporter ATP-b 97.2 0.00047 1E-08 76.5 5.7 44 19-63 319-366 (530)
368 PRK11819 putative ABC transpor 97.2 0.00047 1E-08 76.8 5.7 46 18-64 323-372 (556)
369 TIGR03415 ABC_choXWV_ATP choli 97.2 0.00032 7E-09 72.5 4.0 31 34-64 41-72 (382)
370 PRK11288 araG L-arabinose tran 97.2 0.00051 1.1E-08 75.7 5.8 45 19-64 4-52 (501)
371 PRK11144 modC molybdate transp 97.2 0.00063 1.4E-08 70.5 5.9 29 35-63 16-45 (352)
372 COG1124 DppF ABC-type dipeptid 97.2 0.00072 1.6E-08 62.5 5.5 30 34-63 24-54 (252)
373 PRK09473 oppD oligopeptide tra 97.1 0.00068 1.5E-08 69.3 6.1 48 18-66 11-66 (330)
374 cd03297 ABC_ModC_molybdenum_tr 97.1 0.00038 8.3E-09 66.8 4.0 29 35-63 16-44 (214)
375 PLN03073 ABC transporter F fam 97.1 0.00073 1.6E-08 76.6 6.7 47 16-63 174-224 (718)
376 PRK00409 recombination and DNA 97.1 0.081 1.8E-06 60.9 23.0 30 35-64 318-349 (782)
377 TIGR03719 ABC_ABC_ChvD ATP-bin 97.1 0.00052 1.1E-08 76.5 5.4 44 19-63 322-369 (552)
378 TIGR02633 xylG D-xylose ABC tr 97.1 0.00062 1.3E-08 75.1 5.9 32 33-64 17-49 (500)
379 COG1101 PhnK ABC-type uncharac 97.1 0.00056 1.2E-08 61.5 4.2 30 35-64 24-54 (263)
380 PRK11147 ABC transporter ATPas 97.1 0.00061 1.3E-08 77.1 5.7 45 19-64 319-367 (635)
381 PRK10070 glycine betaine trans 97.1 0.00042 9.2E-09 72.2 4.1 31 34-64 45-76 (400)
382 PRK15439 autoinducer 2 ABC tra 97.1 0.00053 1.1E-08 75.5 5.1 39 25-63 269-310 (510)
383 TIGR03258 PhnT 2-aminoethylpho 97.1 0.00078 1.7E-08 69.6 5.9 30 34-63 22-52 (362)
384 COG3842 PotA ABC-type spermidi 97.1 0.00079 1.7E-08 67.5 5.7 43 20-63 6-52 (352)
385 PRK10636 putative ABC transpor 97.1 0.00066 1.4E-08 76.6 5.7 45 19-64 312-360 (638)
386 TIGR02142 modC_ABC molybdenum 97.1 0.0005 1.1E-08 71.3 4.3 29 35-63 15-44 (354)
387 TIGR03771 anch_rpt_ABC anchore 97.1 0.00037 8.1E-09 67.2 3.1 26 39-64 2-28 (223)
388 KOG0976 Rho/Rac1-interacting s 97.1 0.65 1.4E-05 50.5 52.3 75 265-339 97-171 (1265)
389 cd03270 ABC_UvrA_I The excisio 97.1 0.00054 1.2E-08 66.1 4.1 26 34-59 12-38 (226)
390 TIGR03269 met_CoM_red_A2 methy 97.1 0.00069 1.5E-08 75.1 5.4 46 19-65 279-333 (520)
391 PRK15134 microcin C ABC transp 97.0 0.00073 1.6E-08 75.0 5.5 47 19-66 5-59 (529)
392 TIGR01186 proV glycine betaine 97.0 0.00053 1.2E-08 70.5 4.1 33 33-65 9-42 (363)
393 cd03271 ABC_UvrA_II The excisi 97.0 0.00065 1.4E-08 66.1 4.5 31 34-64 12-43 (261)
394 PRK15079 oligopeptide ABC tran 97.0 0.00085 1.9E-08 68.6 5.5 30 34-63 38-68 (331)
395 COG1134 TagH ABC-type polysacc 97.0 0.00055 1.2E-08 63.4 3.5 34 34-67 44-78 (249)
396 COG4598 HisP ABC-type histidin 97.0 0.0008 1.7E-08 58.3 4.2 23 43-65 33-55 (256)
397 PRK10762 D-ribose transporter 97.0 0.00076 1.7E-08 74.3 5.1 32 33-64 268-300 (501)
398 PRK11308 dppF dipeptide transp 97.0 0.0012 2.5E-08 67.5 5.9 32 34-65 32-64 (327)
399 PLN03073 ABC transporter F fam 97.0 0.0011 2.3E-08 75.3 6.2 46 18-64 507-557 (718)
400 TIGR02633 xylG D-xylose ABC tr 97.0 0.00059 1.3E-08 75.3 4.1 32 33-64 276-308 (500)
401 PRK13549 xylose transporter AT 97.0 0.00065 1.4E-08 74.9 4.2 31 33-63 278-309 (506)
402 PF05701 WEMBL: Weak chloropla 97.0 0.85 1.8E-05 50.1 58.5 60 641-700 297-356 (522)
403 PRK10982 galactose/methyl gala 97.0 0.0006 1.3E-08 75.0 3.9 45 19-63 250-295 (491)
404 TIGR03269 met_CoM_red_A2 methy 97.0 0.00086 1.9E-08 74.4 5.0 34 33-66 16-50 (520)
405 PF15070 GOLGA2L5: Putative go 97.0 0.92 2E-05 50.2 35.7 38 193-230 29-66 (617)
406 PRK15134 microcin C ABC transp 96.9 0.00094 2E-08 74.1 5.0 46 18-64 274-334 (529)
407 PRK10261 glutathione transport 96.9 0.0011 2.3E-08 74.9 5.5 47 19-66 12-66 (623)
408 COG4152 ABC-type uncharacteriz 96.9 0.00087 1.9E-08 61.6 3.6 30 35-64 20-50 (300)
409 COG1125 OpuBA ABC-type proline 96.9 0.0014 3E-08 60.8 4.8 33 34-66 18-51 (309)
410 cd03236 ABC_RNaseL_inhibitor_d 96.9 0.00074 1.6E-08 66.2 3.4 26 40-65 23-49 (255)
411 COG1119 ModF ABC-type molybden 96.9 0.0018 3.9E-08 60.0 5.4 33 34-66 48-81 (257)
412 COG1129 MglA ABC-type sugar tr 96.9 0.001 2.2E-08 69.6 4.3 33 34-66 25-58 (500)
413 COG4942 Membrane-bound metallo 96.8 0.71 1.5E-05 47.3 31.1 28 200-227 38-65 (420)
414 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0011 2.3E-08 63.0 3.8 33 32-64 16-51 (213)
415 PRK11288 araG L-arabinose tran 96.8 0.00096 2.1E-08 73.5 3.9 32 33-64 269-301 (501)
416 PRK10982 galactose/methyl gala 96.8 0.0012 2.7E-08 72.5 4.7 32 33-64 14-46 (491)
417 COG3845 ABC-type uncharacteriz 96.8 0.0012 2.5E-08 67.7 4.0 34 34-68 21-55 (501)
418 PF15619 Lebercilin: Ciliary p 96.8 0.43 9.3E-06 43.9 24.8 19 376-394 128-146 (194)
419 COG0488 Uup ATPase components 96.8 0.0016 3.6E-08 70.1 5.3 32 33-64 19-51 (530)
420 KOG4643 Uncharacterized coiled 96.8 1.4 3E-05 49.7 52.3 41 637-677 413-453 (1195)
421 KOG0980 Actin-binding protein 96.8 1.3 2.7E-05 49.3 32.7 19 851-869 955-973 (980)
422 TIGR02322 phosphon_PhnN phosph 96.8 0.0013 2.8E-08 61.1 3.9 26 43-68 2-27 (179)
423 cd01131 PilT Pilus retraction 96.8 0.0012 2.6E-08 62.1 3.6 26 42-67 1-26 (198)
424 PRK10261 glutathione transport 96.8 0.0019 4.2E-08 72.9 5.9 31 34-64 341-372 (623)
425 COG3883 Uncharacterized protei 96.7 0.57 1.2E-05 44.7 23.6 66 262-327 33-98 (265)
426 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.0014 3.1E-08 62.3 4.0 34 31-64 17-52 (216)
427 cd01130 VirB11-like_ATPase Typ 96.7 0.0013 2.7E-08 61.3 3.5 25 42-66 25-49 (186)
428 PF06160 EzrA: Septation ring 96.7 1.4 3E-05 49.0 49.3 138 684-827 347-493 (560)
429 PRK10078 ribose 1,5-bisphospho 96.7 0.0011 2.3E-08 61.9 2.9 25 43-67 3-27 (186)
430 cd03282 ABC_MSH4_euk MutS4 hom 96.7 0.0019 4.2E-08 60.6 4.5 31 34-64 20-51 (204)
431 PRK10535 macrolide transporter 96.7 0.0023 5E-08 72.5 5.8 47 19-65 4-57 (648)
432 COG4586 ABC-type uncharacteriz 96.7 0.0014 3E-08 61.4 3.2 28 35-62 42-70 (325)
433 KOG0927 Predicted transporter 96.6 0.0033 7.2E-08 65.0 6.0 53 19-71 75-130 (614)
434 KOG0978 E3 ubiquitin ligase in 96.6 1.5 3.3E-05 48.3 40.0 79 387-471 566-644 (698)
435 COG4136 ABC-type uncharacteriz 96.6 0.0046 9.9E-08 52.0 5.6 35 38-72 23-58 (213)
436 COG4107 PhnK ABC-type phosphon 96.6 0.0022 4.7E-08 55.3 3.8 34 34-67 23-57 (258)
437 COG4477 EzrA Negative regulato 96.6 1.2 2.6E-05 46.6 34.5 46 176-221 94-139 (570)
438 COG1127 Ttg2A ABC-type transpo 96.6 0.0023 4.9E-08 59.0 3.8 31 36-66 27-58 (263)
439 PRK13409 putative ATPase RIL; 96.5 0.0023 5E-08 71.1 4.5 30 34-63 356-386 (590)
440 PLN03211 ABC transporter G-25; 96.5 0.0019 4.2E-08 72.7 3.9 30 34-63 85-115 (659)
441 COG4167 SapF ABC-type antimicr 96.5 0.0027 5.8E-08 55.3 3.7 31 33-63 29-60 (267)
442 cd02025 PanK Pantothenate kina 96.5 0.0018 4E-08 61.7 3.1 24 44-67 1-24 (220)
443 TIGR00554 panK_bact pantothena 96.5 0.0022 4.7E-08 63.3 3.6 27 41-67 61-87 (290)
444 PF04849 HAP1_N: HAP1 N-termin 96.5 0.96 2.1E-05 44.3 27.2 12 139-150 36-47 (306)
445 PF03193 DUF258: Protein of un 96.5 0.0023 5E-08 56.3 3.2 25 41-65 34-58 (161)
446 KOG0946 ER-Golgi vesicle-tethe 96.5 1.9 4.1E-05 47.5 26.8 34 409-442 849-882 (970)
447 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.0023 5.1E-08 65.6 3.8 26 42-67 134-159 (358)
448 COG2805 PilT Tfp pilus assembl 96.5 0.0021 4.6E-08 61.2 3.1 28 41-68 124-151 (353)
449 PF05911 DUF869: Plant protein 96.5 2.3 4.9E-05 48.3 60.7 46 186-231 17-62 (769)
450 KOG0612 Rho-associated, coiled 96.5 2.6 5.7E-05 48.9 32.4 6 103-108 355-360 (1317)
451 KOG0963 Transcription factor/C 96.5 1.6 3.6E-05 46.6 33.9 15 429-443 344-358 (629)
452 TIGR00954 3a01203 Peroxysomal 96.4 0.004 8.6E-08 70.7 5.7 45 19-64 451-500 (659)
453 smart00534 MUTSac ATPase domai 96.4 0.0023 4.9E-08 59.5 3.1 21 44-64 1-21 (185)
454 COG4185 Uncharacterized protei 96.4 0.00081 1.8E-08 57.1 0.1 26 42-67 2-27 (187)
455 PRK09825 idnK D-gluconate kina 96.4 0.0029 6.3E-08 57.9 3.7 26 43-68 4-29 (176)
456 KOG0963 Transcription factor/C 96.4 1.8 3.9E-05 46.3 34.8 12 203-214 124-135 (629)
457 PF09818 ABC_ATPase: Predicted 96.4 0.01 2.2E-07 60.6 7.5 36 40-75 242-277 (448)
458 TIGR00235 udk uridine kinase. 96.4 0.0029 6.3E-08 60.2 3.5 25 43-67 7-31 (207)
459 PF05667 DUF812: Protein of un 96.4 2.2 4.8E-05 47.1 38.6 36 194-229 329-364 (594)
460 COG4525 TauB ABC-type taurine 96.3 0.0041 8.8E-08 55.1 3.9 30 34-63 22-52 (259)
461 KOG2355 Predicted ABC-type tra 96.3 0.0039 8.5E-08 55.5 3.8 20 43-62 41-60 (291)
462 COG0194 Gmk Guanylate kinase [ 96.3 0.0031 6.8E-08 55.9 3.1 23 43-65 5-27 (191)
463 COG4988 CydD ABC-type transpor 96.3 0.0035 7.7E-08 66.0 4.0 30 34-63 338-368 (559)
464 COG2274 SunT ABC-type bacterio 96.3 0.0032 6.9E-08 70.6 3.9 29 36-64 492-521 (709)
465 COG4148 ModC ABC-type molybdat 96.3 0.0049 1.1E-07 58.0 4.4 23 42-64 24-46 (352)
466 COG4161 ArtP ABC-type arginine 96.3 0.0053 1.2E-07 52.2 4.2 42 24-65 2-51 (242)
467 TIGR03007 pepcterm_ChnLen poly 96.3 1.6 3.4E-05 48.4 24.9 118 640-757 162-290 (498)
468 smart00382 AAA ATPases associa 96.3 0.0037 8E-08 55.8 3.6 29 42-70 2-30 (148)
469 PRK11176 lipid transporter ATP 96.3 0.004 8.7E-08 70.4 4.6 33 34-66 360-393 (582)
470 COG4615 PvdE ABC-type sideroph 96.3 0.0068 1.5E-07 60.1 5.3 40 22-61 320-368 (546)
471 PRK10789 putative multidrug tr 96.3 0.0038 8.3E-08 70.0 4.2 30 34-63 332-362 (569)
472 TIGR03238 dnd_assoc_3 dnd syst 96.2 0.0034 7.4E-08 65.1 3.3 27 34-60 23-50 (504)
473 TIGR03263 guanyl_kin guanylate 96.2 0.0034 7.4E-08 58.4 3.1 23 44-66 3-25 (180)
474 KOG0946 ER-Golgi vesicle-tethe 96.2 2.6 5.7E-05 46.4 30.0 11 6-16 355-367 (970)
475 cd02023 UMPK Uridine monophosp 96.2 0.0038 8.2E-08 59.1 3.4 24 44-67 1-24 (198)
476 PRK10929 putative mechanosensi 96.2 4.1 9E-05 48.5 32.4 16 350-365 214-229 (1109)
477 COG4181 Predicted ABC-type tra 96.2 0.005 1.1E-07 53.2 3.5 27 35-61 28-55 (228)
478 COG0488 Uup ATPase components 96.2 0.005 1.1E-07 66.5 4.3 35 35-69 340-375 (530)
479 COG1132 MdlB ABC-type multidru 96.2 0.0042 9.1E-08 69.8 4.0 34 34-67 346-380 (567)
480 TIGR00955 3a01204 The Eye Pigm 96.2 0.0043 9.3E-08 70.0 4.1 30 34-63 42-72 (617)
481 cd03285 ABC_MSH2_euk MutS2 hom 96.2 0.006 1.3E-07 58.3 4.5 31 35-65 22-53 (222)
482 TIGR00150 HI0065_YjeE ATPase, 96.2 0.0057 1.2E-07 52.0 3.8 26 43-68 23-48 (133)
483 TIGR01842 type_I_sec_PrtD type 96.2 0.0046 1E-07 69.0 4.3 31 34-64 335-366 (544)
484 TIGR00634 recN DNA repair prot 96.1 2.4 5.3E-05 47.5 25.3 236 158-409 138-382 (563)
485 TIGR02868 CydC thiol reductant 96.1 0.0047 1E-07 68.9 4.2 31 33-63 351-382 (529)
486 cd02019 NK Nucleoside/nucleoti 96.1 0.0055 1.2E-07 45.7 3.2 23 44-66 1-23 (69)
487 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.0067 1.4E-07 57.6 4.6 32 34-65 22-54 (222)
488 TIGR01843 type_I_hlyD type I s 96.1 1.3 2.7E-05 48.1 23.0 164 664-832 78-272 (423)
489 PRK09270 nucleoside triphospha 96.1 0.0048 1E-07 59.7 3.7 30 41-70 32-61 (229)
490 TIGR01194 cyc_pep_trnsptr cycl 96.1 0.0048 1E-07 68.9 4.2 31 33-63 358-389 (555)
491 COG1135 AbcC ABC-type metal io 96.1 0.0099 2.2E-07 57.2 5.5 43 19-62 1-52 (339)
492 PRK13409 putative ATPase RIL; 96.1 0.0038 8.3E-08 69.4 3.3 24 40-63 96-120 (590)
493 KOG0056 Heavy metal exporter H 96.1 0.0068 1.5E-07 61.7 4.6 55 2-70 536-592 (790)
494 KOG0057 Mitochondrial Fe/S clu 96.1 0.0061 1.3E-07 63.4 4.4 34 33-66 368-402 (591)
495 PF13245 AAA_19: Part of AAA d 96.1 0.007 1.5E-07 45.9 3.6 26 41-66 9-35 (76)
496 COG3709 Uncharacterized compon 96.1 0.0067 1.4E-07 51.8 3.8 31 40-70 3-33 (192)
497 PF00488 MutS_V: MutS domain V 96.1 0.0075 1.6E-07 58.1 4.7 35 31-65 29-66 (235)
498 KOG0976 Rho/Rac1-interacting s 96.1 2.9 6.3E-05 45.8 53.1 471 224-872 38-508 (1265)
499 PRK13657 cyclic beta-1,2-gluca 96.1 0.0052 1.1E-07 69.5 4.3 31 33-63 351-382 (588)
500 PRK10522 multidrug transporter 96.1 0.0051 1.1E-07 68.7 4.1 31 33-63 339-370 (547)
No 1
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-67 Score=553.00 Aligned_cols=849 Identities=35% Similarity=0.569 Sum_probs=699.3
Q ss_pred CCCCCCCCCceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCcee
Q 002747 11 GYGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYA 90 (885)
Q Consensus 11 ~~~~~~~~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~ 90 (885)
+++..+...++|.+|+|.||++|.+..|+|+|++|+|+|+||||||.||-||+.|||++++.+.||.++.++|+.|++++
T Consensus 31 ~~~~~~~~sG~I~sI~L~NFMCHsnL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tnRgsslK~lIK~G~~~A 110 (1074)
T KOG0250|consen 31 DFTLQRAESGKIESIHLTNFMCHSNLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATNRGSSLKDLIKDGCSSA 110 (1074)
T ss_pred chhhhhhhcceEEEEEEeeecccccceeccCCCceEeecCCCCcHHHHHHHHHHhhccccccccchhhHHHHHhCCCcce
Confidence 44555677799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHh
Q 002747 91 MVEVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (885)
Q Consensus 91 ~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (885)
.|+++++|.|-++|.|++||+.++|.|+|. ++.+.|...+.+|++|+.+..+++.++..|||++.||++++.|+.++.|
T Consensus 111 ~IsItL~N~G~~Afk~eiyG~~IiIER~I~~~~S~~~~~~~~~grvVStKk~dl~~vv~~f~I~veNP~~~lsQD~aR~F 190 (1074)
T KOG0250|consen 111 KISITLSNSGLDAFKPEIYGNSIIIERTIRRSSSTYYLLRSANGRVVSTKKEDLDTVVDHFNIQVENPMFVLSQDAARSF 190 (1074)
T ss_pred EEEEEEecCCcccCChhhcCCeeEEEEeeccccchHHHHhhccCccccccHHHHHHHHHHhCcCCCCcchhhcHHHHHHH
Confidence 999999999999999999999999999999 4544444547899999999999999999999999999999999999999
Q ss_pred hhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKK 249 (885)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 249 (885)
|....+...|++|..++.++.+...+..+.+.+......+......+..+++++...+..+..++....+...+..+...
T Consensus 191 L~~~~p~dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k 270 (1074)
T KOG0250|consen 191 LANSNPKDKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAK 270 (1074)
T ss_pred HhcCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002747 250 LAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLAT 329 (885)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (885)
+.|..+.....++......+...+..++.+++.++.....+..+...+.+.++.+..+.........++..+...+..+.
T Consensus 271 ~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~ 350 (1074)
T KOG0250|consen 271 MAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLR 350 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002747 330 KEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSEK 409 (885)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 409 (885)
.+...+...+...+..+...+..+..++..+..+..+........+.+.+..+..+..+++.++..+..|..+++.+..+
T Consensus 351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888777666677778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCCCCCcccccccEEecCCC
Q 002747 410 LSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGD 489 (885)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (885)
......+...++..+..++..+......+..+.....+...+|+ +.++.++..|......|..|+.||++.++.+.+ +
T Consensus 431 ~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~-~ 508 (1074)
T KOG0250|consen 431 AKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKE-P 508 (1074)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhcCCCCCCCCccceeEecC-c
Confidence 88888888888888999999999999999999999888899998 889999999999998888899999999999999 8
Q ss_pred ChHHHHHHHHccccCeEEecChhhHHHHHHHHHHhCCCC--ccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCchHH
Q 002747 490 TWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNH--LQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTV 567 (885)
Q Consensus 490 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 567 (885)
.|..+++..+|+.+.+|+|.+..+...+..+++..+.+. +++++..+++ ...+....|...++.++..+.++++.+
T Consensus 509 KWa~aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~--~~y~~~~~p~~~~pTil~~le~ddp~V 586 (1074)
T KOG0250|consen 509 KWALAIERCLGNLLNAFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTP--FDYSVGRNPGYEFPTILDALEFDDPEV 586 (1074)
T ss_pred HHHHHHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCc--cccccccCCCCCCCceeeeeecCChHH
Confidence 999999999999999999999999999999998877654 5565555433 333444444334788999999999999
Q ss_pred HHHhhccCCcceEEEeCChHHHHHHhhhcC-CCCcceEEcccCCeeeecCCc----ccccccccccCCccccCChHHHHH
Q 002747 568 INVLVDMGSAERQVLVRDYDVGKAVAFEQR-ISNLKEVYTLDGHKMFSRGSV----QTILPLNRRLRTGRLCGSYDEKIK 642 (885)
Q Consensus 568 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~ 642 (885)
..+++|...+.+.+++++-..+..+..... +.++..+++++|.....+|+. ++.....+ ++..........++
T Consensus 587 ~N~LID~s~iE~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r--~~~~~~~s~d~~ie 664 (1074)
T KOG0250|consen 587 LNVLIDKSGIEQVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRAR--RPGVDEFSFDDEIE 664 (1074)
T ss_pred HHHhhhhccceeEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCC--CccccchhHhHHHH
Confidence 999999999999999999666666554443 456778999999877666652 11111111 23455567888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchHHHHHH
Q 002747 643 DLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQE 722 (885)
Q Consensus 643 ~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (885)
.++.++..++.++..+......++..+..++..+..+...+..++..+.....++..++...+. ...-...++.+..+
T Consensus 665 ~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~--~~~~~~~~~~l~~e 742 (1074)
T KOG0250|consen 665 DLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEE--KQVDISKLEDLARE 742 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhcchhhhHHHHHH
Confidence 9999999988888888888888888888888888888888888888888888888777763111 00022445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 002747 723 ISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRT 802 (885)
Q Consensus 723 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (885)
+.....++......+..+..++..+......+...+......+......++.+..++.....++.......-.++..+.
T Consensus 743 i~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~HyE~~~K- 821 (1074)
T KOG0250|consen 743 IKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRHYEDKLK- 821 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhHHHHHH-
Confidence 6666666666666677777777777777777777777666666666666666666666666666655555555544444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc--eecccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC
Q 002747 803 RVVGAIKEAESQYRELELLRQDSCRKASVICPES--EIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYEH 872 (885)
Q Consensus 803 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 872 (885)
.....+...+.+...++..+.+....+...+... ++. ..+...+++.+.+..+...++.++..+..
T Consensus 822 ~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~----~~~~~~~eik~ei~rlk~~i~~~ee~~~~ 889 (1074)
T KOG0250|consen 822 SRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIE----ALGKTVAEIKREIKRLKRQIQMCEESLGE 889 (1074)
T ss_pred HhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhh----cccchHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3444555556666666666666666666666543 221 11335688889999999998888877654
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.1e-53 Score=497.34 Aligned_cols=570 Identities=21% Similarity=0.324 Sum_probs=365.1
Q ss_pred ceeeEEEEEeccccc-ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCce------eEE
Q 002747 20 GTITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSY------AMV 92 (885)
Q Consensus 20 m~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~------~~v 92 (885)
|+|++|.+.||++|. +++|+|+||+|+|+||||||||+|+|||+||||..+.+.+|+.++.++|+.|... |.|
T Consensus 1 m~lk~i~l~gFKSF~~~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~~~~A~V 80 (1163)
T COG1196 1 MYLKRIELKGFKSFADPTEINFSPGFTAIVGPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKPANYAEV 80 (1163)
T ss_pred CeeeEEEEECcccCCCCeeeecCCCCeEEECCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCCCCceEE
Confidence 899999999999994 5888999999999999999999999999999999999999999999999988766 999
Q ss_pred EEEEEeCCCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhh
Q 002747 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 171 (885)
+++|+|.+ .+.|..++ ++.|+|++. +|.|.|+| ||..+ +..++..++...|++..++ ++++||++..|+.
T Consensus 81 ~l~fdN~d--~~~~~~~~-ei~v~Rri~r~g~S~Y~I---Ng~~~--~~~dI~~l~~~~gi~~~~~-~iV~QG~V~~i~~ 151 (1163)
T COG1196 81 ELTFDNSD--NTLPLEYE-EISVTRRIYRDGESEYYI---NGEKV--RLKDIQDLLADSGIGKESY-SIVSQGKVEEIIN 151 (1163)
T ss_pred EEEEeCCC--CcCCcccc-eEEEEEEEEEcCCcEEEE---CCcEe--eHHHHHHHHHhcCCCCCCC-ceeecccHHHHHc
Confidence 99999986 44444454 889999988 88899999 78888 5579999999999999888 9999999999998
Q ss_pred cCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002747 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLA 251 (885)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (885)
..+. .+..++..+.++..+..........+......+..+...+..++.+++.|..+.+....+..+..++..+...+.
T Consensus 152 ~kp~-err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 152 AKPE-ERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred CCHH-HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554 666688888999999999999999999999999999989999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHH-
Q 002747 252 WSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVE-------KTSEVRRRKDELQQ- 323 (885)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~- 323 (885)
...+.....++..+...+..+...+..+...+......+..+...+..+...+..+.. .+..+...+..+..
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666666666666666555555555544444444444444333333322211 11111111111111
Q ss_pred --------------------HHHHHHHHHHH-------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 002747 324 --------------------SISLATKEKLE-------LEGELVRNTSYMQK-----------MVNRVKGLEQQVHDIQE 365 (885)
Q Consensus 324 --------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~ 365 (885)
.+......+.. +............. ....+..+...+..+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (1163)
T COG1196 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 11111111111 00000000000111 11111122222222221
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH-------HHHHH---------------------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 002747 366 QHVRNTQAEESEIEAKLKELQC-------EIDAA---------------------NITLSRMKEEDSALSEKLSKEKNEI 417 (885)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------------------~~~~~~l~~~~~~l~~~~~~~~~~~ 417 (885)
+. ......+..++.++..+.. .+..+ ...+..+...+..+...+..++..+
T Consensus 391 ~~-~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 469 (1163)
T COG1196 391 EL-AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELEREL 469 (1163)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111122222222111 11111 1222222222222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCCCCCcccccccEEecCCCChHHHHHH
Q 002747 418 RRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQ 497 (885)
Q Consensus 418 ~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 497 (885)
..+...+..+...+..+..++..+...... + . .....+...... ..+++|++.+++.|+ +.|..|++.
T Consensus 470 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~----~--~---~~~~~~~~~~~~-~~Gv~G~v~~li~v~--~~y~~Aie~ 537 (1163)
T COG1196 470 AELQEELQRLEKELSSLEARLDRLEAEQRA----S--Q---GVRAVLEALESG-LPGVYGPVAELIKVK--EKYETALEA 537 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----h--h---hHHHHHHHHhcc-CCCccchHHHhcCcC--hHHHHHHHH
Confidence 223333333333333333333333222111 0 1 111122222222 456789999999985 489999999
Q ss_pred HHccccCeEEecChhhHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCc---hHHHHHhhcc
Q 002747 498 AIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDN---PTVINVLVDM 574 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~l~~~ 574 (885)
++|+.+.+++|.+..++..+..+++..+.++.+|+|++...+....+... .++.++.+.+.+.+++ +.+..++
T Consensus 538 alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~-~~g~~~~a~dli~~d~~~~~~~~~~l--- 613 (1163)
T COG1196 538 ALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDA-APGFLGLASDLIDFDPKYEPAVRFVL--- 613 (1163)
T ss_pred HcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhcccccccccc-ccchhHHHHHHhcCCHHHHHHHHHHh---
Confidence 99999999999999999999999999999999999887765443332221 1133344556667665 2233333
Q ss_pred CCcceEEEeCChHHHHHHhhhcCCCCcceEEcccCCeeeecCCcccc
Q 002747 575 GSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTI 621 (885)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 621 (885)
+.+++|.++..+..+....+.. .++||++|+.+.++|.+.++
T Consensus 614 ---~~t~Iv~~l~~A~~l~~~~~~~--~riVTl~G~~~~~~G~~tGG 655 (1163)
T COG1196 614 ---GDTLVVDDLEQARRLARKLRIK--YRIVTLDGDLVEPSGSITGG 655 (1163)
T ss_pred ---CCeEEecCHHHHHHHHHhcCCC--ceEEecCCcEEeCCeeeecC
Confidence 4589999999999888765322 27999999999999888766
No 3
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.9e-47 Score=399.95 Aligned_cols=659 Identities=17% Similarity=0.249 Sum_probs=353.5
Q ss_pred CCCCceeeEEEEEeccccccee-E-EeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCC---c--
Q 002747 16 RSGAGTITRVRLENFMCHSSLQ-I-ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC---S-- 88 (885)
Q Consensus 16 ~~~~m~i~~i~l~nf~~~~~~~-i-~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~---~-- 88 (885)
.++-|+|..|.+.||++|.+.. | +|++.|+.|+||||||||+++|++.|+||.++.+ .|..++..+|+.+. +
T Consensus 80 ~~~RL~I~~i~~~NFKSYaG~~ilGPFHksFtaIvGPNGSGKSNVIDsmLFVFGfRA~k-iR~~klS~LIh~S~~~~~l~ 158 (1293)
T KOG0996|consen 80 GGPRLMITEIVVENFKSYAGKQILGPFHKSFTAIVGPNGSGKSNVIDSMLFVFGFRASK-IRSKKLSALIHKSDGHPNLQ 158 (1293)
T ss_pred CCCeeeehhhhhhhhhhhcCceeecCCCCCceeeECCCCCCchHHHHHHHHHhhhhHhH-HhHHHHHHHHhccCCCCCCc
Confidence 4788999999999999995544 4 9999999999999999999999999999999987 58889999998443 3
Q ss_pred eeEEEEEEEeC---CCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechh
Q 002747 89 YAMVEVELKNR---GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQD 164 (885)
Q Consensus 89 ~~~v~l~~~~~---~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 164 (885)
.|.|++.|.-- +.+.| -.+.|..++|+|+.. ++.+.|+| ||+.. +.+++..++..-|||.++..|.+-||
T Consensus 159 SCsV~vhFq~iiD~~~~~~-E~vp~s~~~ItRtA~~~NsSkY~I---ngk~a--s~~~V~~lLk~~gIDleHNRFLILQG 232 (1293)
T KOG0996|consen 159 SCSVEVHFQKIIDKPGGTY-EVVPDSEFTITRTAFRDNSSKYYI---NGKEA--SFKDVTKLLKSHGIDLEHNRFLILQG 232 (1293)
T ss_pred ceeEEEeeeeeeccCCCce-eecCCCeeEEEehhhhCCCceEeE---CCccc--cHHHHHHHHHhcCCCCccceeeeehh
Confidence 49999999843 22233 335567899999988 88899999 67777 45799999999999999999999888
Q ss_pred hHhHhhhcCC------------------hhhHHHHHHhh--hHH---------------------HHHH----HHHHHHH
Q 002747 165 KSREFLHSGN------------------DKDKFKFFFKA--TLL---------------------QQVN----DLLQSIY 199 (885)
Q Consensus 165 ~~~~~~~~~~------------------~~~~~~~~~~~--~~~---------------------~~~~----~~l~~~~ 199 (885)
.+....-.++ +-.+|.-.... ..+ ..+. ..+.-+.
T Consensus 233 EVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~ 312 (1293)
T KOG0996|consen 233 EVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLK 312 (1293)
T ss_pred hHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8765433321 00111000000 000 0000 0000000
Q ss_pred H--HH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------------HHHHHHHH-----------HHHHHHHH
Q 002747 200 N--HL-----NKGDALVLELEATIKPTEKELSELQRKIRNM------------EHVEEITQ-----------DLQRLKKK 249 (885)
Q Consensus 200 ~--~l-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~-----------~~~~~~~~ 249 (885)
. ++ ...+..+.+....+.....++..+...+... +....... ....+...
T Consensus 313 kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~ 392 (1293)
T KOG0996|consen 313 KENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKK 392 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0001111111111111111111111111100 00000011 11111111
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------
Q 002747 250 LAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDE--------- 320 (885)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 320 (885)
+ ..+..+-...+..++.+...+..++..+++......+++...+.....+.....++.++......
T Consensus 393 ~-----~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 393 F-----QDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12222222222333333333333333333333333333322222222222222222222222211
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 321 --LQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSR 398 (885)
Q Consensus 321 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (885)
+..+-.....++..++..+..+..++.....++.-.+.++.-+.... ........+++..+......+......+..
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~-~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~ 546 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRH-ETGLKKVEELKGKLLASSESLKEKKTELDD 546 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223334444444444444444444444444444444443322 222334445555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcC-CCCCCCcc
Q 002747 399 MKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHH-KFKSPPIG 477 (885)
Q Consensus 399 l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 477 (885)
+...+..+..++.+....+..+..+...+...+..+..++..+....... ..-..++..+.+... .-..+++|
T Consensus 547 ~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~------~s~~kVl~al~r~kesG~i~Gf~G 620 (1293)
T KOG0996|consen 547 LKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS------RSRNKVLDALMRLKESGRIPGFYG 620 (1293)
T ss_pred HHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHcCCCCcccc
Confidence 55555555555555555555555555555555555555555544422111 011123333433221 11345688
Q ss_pred cccccEEecCCCChHHHHHHHHccccCeEEecChhhHHHHHHHHHHhCCCCccEEEEecCCCCC-CCCCCCCCCCCCCch
Q 002747 478 PIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRL-SLPHHMLPHTKHPTT 556 (885)
Q Consensus 478 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 556 (885)
.++++..+ + +.|+.|+.. +++.+.++||.+..++..+..+|+.++.++.+|+++|....-. .... ..++...|.+
T Consensus 621 RLGDLg~I-d-~kYDvAIsT-ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~~~l~~-i~tpenvPRL 696 (1293)
T KOG0996|consen 621 RLGDLGAI-D-EKYDVAIST-ACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQKKLAP-ITTPENVPRL 696 (1293)
T ss_pred cccccccc-c-hHHHHHHHH-hccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhhhccCC-CCCCCCcchH
Confidence 89988887 4 689999998 6666889999999999999999999999999999887653111 1111 2233566778
Q ss_pred hhccccCchHHHHHhhccCCcceEEEeCChHHHHHHhhhcCCCCcceEEcccCCeeeecCCcccccccccccC---Cccc
Q 002747 557 LSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLR---TGRL 633 (885)
Q Consensus 557 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~ 633 (885)
++.+.+.++.+..++.. .+.++++++++..+..+++....+ .+++|++|.++...|.+++++....... ....
T Consensus 697 fDLv~~~d~~~r~aFYf--aLrdtLV~d~LeQAtRiaygk~rr--~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~ 772 (1293)
T KOG0996|consen 697 FDLVKCKDEKFRPAFYF--ALRDTLVADNLEQATRIAYGKDRR--WRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRV 772 (1293)
T ss_pred hhhhccCCHHHHHHHHH--HHhhhhhhcCHHHHHHHhhcCCCc--eEEEEecceeecccccccCCCCcCCCCCCCCcccc
Confidence 88888886654443321 234589999999999998865322 2699999999998888876654322211 1101
Q ss_pred -------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 634 -------CGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (885)
Q Consensus 634 -------~~~~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 701 (885)
...++..+.........+..++..+..+...++..+..++.+++.+......+...+..++.++..++
T Consensus 773 t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E 847 (1293)
T KOG0996|consen 773 TGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELE 847 (1293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234444444444444444444444444444444444444444444333333333333333443333
No 4
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.7e-48 Score=402.11 Aligned_cols=828 Identities=15% Similarity=0.223 Sum_probs=403.1
Q ss_pred ceeeEEEEEecccccceeE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCC----ceeEEE
Q 002747 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----SYAMVE 93 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~----~~~~v~ 93 (885)
|+|++|.|.||++|..+++ .|+|.||+|+|-||||||+|+|+|||+||-..-..-|..++.++|+.+. +.|.|+
T Consensus 1 M~IkeiiLDGFKSYa~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvLGI~nl~~VRA~nlqeLIyk~GQAGiTkAsVs 80 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDSICFVLGITNLSQVRASNLQELIYKNGQAGITKASVS 80 (1174)
T ss_pred CchhhhhhcchhcceeeeeccCCCcccchhhcCCCCCchHHHHHHHHHHccchHHHHHHHHHHHHHHhcCcccceeEEEE
Confidence 8999999999999965543 9999999999999999999999999999998888889999999997665 899999
Q ss_pred EEEEeCCCCCC-CcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhh
Q 002747 94 VELKNRGEDAF-KPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 94 l~~~~~~~~~~-~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 171 (885)
++|+|..+... .+-..-++++|+|.+. +|++.|.| ||+..+ ...++.+|...++++++|+|.+.||++...+.
T Consensus 81 VvFdNtdk~~SP~G~E~h~EIsVtRqIv~gG~~KylI---NGh~a~--~~~vq~lF~SVqLNvNNP~FLIMQGrITkVLN 155 (1174)
T KOG0933|consen 81 VVFDNTDKARSPLGYEHHDEISVTRQIVVGGTNKYLI---NGHLAQ--NSKVQDLFCSVQLNVNNPHFLIMQGRITKVLN 155 (1174)
T ss_pred EEecCCCcccCCCCcccCCeeEEEEEEEecCceeEEE---cCeeCc--hhHHHHHHHHhcccCCCCceEEecccchhhhc
Confidence 99999865311 1111236899999999 99999999 677664 47899999999999999999999998765555
Q ss_pred cC-----------ChhhHHHHHHhh-------------------------------------------------------
Q 002747 172 SG-----------NDKDKFKFFFKA------------------------------------------------------- 185 (885)
Q Consensus 172 ~~-----------~~~~~~~~~~~~------------------------------------------------------- 185 (885)
.+ ++-..|..-...
T Consensus 156 MKp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~i 235 (1174)
T KOG0933|consen 156 MKPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICI 235 (1174)
T ss_pred CCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 332333222111
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhH--H
Q 002747 186 -TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEH---------VEEITQDLQRLKKKLAW--S 253 (885)
Q Consensus 186 -~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~ 253 (885)
..+-............+......+..+...+.....++..++.+++++.. ...+...+..+...... .
T Consensus 236 a~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t 315 (1174)
T KOG0933|consen 236 AYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREET 315 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHH
Confidence 11111111111111222222222223333333333333333333333221 11111111111111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 002747 254 WVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKL 333 (885)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (885)
.+......+...+..++.+...+.+....+......+.........+..........+...+..+..+..-+..-..+-.
T Consensus 316 ~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~ 395 (1174)
T KOG0933|consen 316 SLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEK 395 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchh
Confidence 11111222222222222222222222222222222222222222222222222222222222222222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHH
Q 002747 334 ELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALS---EKL 410 (885)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~ 410 (885)
.+..++......+......+......+..+..++ ...+.+..............++.....++.++.++..+. ...
T Consensus 396 ~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~el-k~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~ 474 (1174)
T KOG0933|consen 396 TLEDQLRDAKITLSEASTEIKQAKLKLEHLRKEL-KLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQE 474 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchH
Confidence 2222222233333333333333333333333222 111111222222222222333333333333333333221 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCCCCCcccccccEEecCCCC
Q 002747 411 SKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDT 490 (885)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (885)
..+......+...+..+...+..+..++..+.-.+..+.+.|+ ...+.|.++.++.|++ ..
T Consensus 475 e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfd------------------rs~V~G~Va~Li~vkd-~~ 535 (1174)
T KOG0933|consen 475 EALKQRRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFD------------------RSKVKGLVAKLIKVKD-RS 535 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccch------------------HHHHHHHHHHHheeCc-ch
Confidence 2233333333333333333344444333333333333333332 1124566777888888 88
Q ss_pred hHHHHHHHHccccCeEEecChhhHHHHHHHHHHhCC-CCccEEEEecCCCCCCCCCCC-----CCCCCCCchhhccccCc
Q 002747 491 WAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANY-NHLQIIIYDFSRPRLSLPHHM-----LPHTKHPTTLSVLQSDN 564 (885)
Q Consensus 491 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~ 564 (885)
+..|++.+.|+.+..+||.+..++..+. ....+ .+++++|++........|... ..+.+...+++.+.+++
T Consensus 536 ~~tAle~~aGgrLynvVv~te~tgkqLL---q~g~l~rRvTiIPLnKI~s~~~s~~v~~~ak~v~~~~v~~al~Li~yd~ 612 (1174)
T KOG0933|consen 536 YATALETTAGGRLYNVVVDTEDTGKQLL---QRGNLRRRVTIIPLNKIQSFVLSPNVLQAAKNVGNDNVELALSLIGYDD 612 (1174)
T ss_pred HHHHHHHHhcCcceeEEeechHHHHHHh---hcccccceeEEEechhhhhccCCHhHHHHHHHhcCchHHHHHHHhcCCH
Confidence 8999999999999999999988775443 32222 467788776543221111000 11234455667777776
Q ss_pred hHHHHHhhccCCcceEEEeCChHHHHHHhhhcCCCCcceEEcccCCeeeecCCcccccccccccCCcc--ccCChHHHHH
Q 002747 565 PTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGR--LCGSYDEKIK 642 (885)
Q Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~ 642 (885)
.....+. ..++++++|+++.+++.+++.+.+.. +.||+.|+++.+.|.++++........... ....++.++.
T Consensus 613 ~l~~ame---fvFG~tlVc~~~d~AKkVaf~~~i~~--rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~ 687 (1174)
T KOG0933|consen 613 ELKKAME---FVFGSTLVCDSLDVAKKVAFDPKIRT--RSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELR 687 (1174)
T ss_pred HHHHHHH---HHhCceEEecCHHHHHHhhccccccc--ceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHH
Confidence 5433332 23467999999999999999887643 569999999999988776554322100000 0122444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHHH
Q 002747 643 DLERAALHVQEEAQQCRKRKRDSEERLQDLQQ-----------------------------HQQNVKRRCFSAERNRMSK 693 (885)
Q Consensus 643 ~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~-----------------------------~~~~~~~~~~~~~~~~~~~ 693 (885)
..+.++..++.++..+.........-.+.+.. ++.+...++......+...
T Consensus 688 ~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~ 767 (1174)
T KOG0933|consen 688 AIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKC 767 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554444433322211111111 1111111122222222222
Q ss_pred HHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 694 ELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEK--------------EIILEKLQFSMNEAEAKVEDLKLSFQ 759 (885)
Q Consensus 694 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (885)
...+..++..+.++ ...-..++..+..++..+...+.+. ..+.+.++.++.....++..+...+.
T Consensus 768 ~~~i~~lE~~~~d~-~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~ 846 (1174)
T KOG0933|consen 768 EDKISTLEKKMKDA-KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQIS 846 (1174)
T ss_pred HHHHHHHHHHHhHh-hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333222220 0012223333333333222222222 22222223333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 760 SLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMR-------------TRVVGAIKEAESQYRELELLRQDSC 826 (885)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~l~~~~ 826 (885)
.+..++..+...+...+..+..+..++..+...+.....++. ....-.+..+..++..++.+-.++.
T Consensus 847 ~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~ 926 (1174)
T KOG0933|consen 847 SLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANAR 926 (1174)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHH
Confidence 333444444444444444444444444444433333333332 0122233344444555555545544
Q ss_pred HHHhhhCCcceecc-----------cCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCccCCCCCcC
Q 002747 827 RKASVICPESEIEA-----------LGGWDGSTPEQLSAQVNRLNQRLKHESHQYEHKLSSLCPFD 881 (885)
Q Consensus 827 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (885)
..+..+.....+.. .+++...++-+...++.+++......++.++|+..++....
T Consensus 927 k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~ 992 (1174)
T KOG0933|consen 927 KEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERA 992 (1174)
T ss_pred HHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHH
Confidence 44444433322222 56777888899999999999999999999998776665443
No 5
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.8e-45 Score=380.23 Aligned_cols=674 Identities=15% Similarity=0.212 Sum_probs=402.9
Q ss_pred ceeeEEEEEecccccceeE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCC----ceeEEE
Q 002747 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC----SYAMVE 93 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~----~~~~v~ 93 (885)
|+|+.|.|.||++|.+.++ +|+|..|||+|.||||||+|+.||+|+|.+..+...|.. -.++++.|+ ..|.|+
T Consensus 1 MyIk~ViI~GFrSYrd~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~-R~gLlHEGsG~~V~sA~VE 79 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYRDETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREE-RQGLLHEGSGAMVMSASVE 79 (1200)
T ss_pred CceEEeeeccchhhccccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHH-HhhhhhcCCCcceEEEEEE
Confidence 8999999999999977665 699999999999999999999999999988776533322 256788776 368999
Q ss_pred EEEEeCCCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhhcC
Q 002747 94 VELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSG 173 (885)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 173 (885)
++|++..... +.++.++.|.|+++..++.|++ +++.| +..++-.+++..|....+||++++||.+..+. .+
T Consensus 80 IvF~nsdnr~---~~~k~Ev~lrRtVGlKKDeY~l---D~k~V--tk~evvnLLESAGFSrsNPYyIV~QGkI~~La-~a 150 (1200)
T KOG0964|consen 80 IVFDNSDNRL---PRGKSEVSLRRTVGLKKDEYFL---DNKMV--TKGEVVNLLESAGFSRSNPYYIVPQGKINELA-NA 150 (1200)
T ss_pred EEEeCccccc---CCCCCeEEEEEeecccchhhhc---ccccc--cHHHHHHHHHhcCcccCCCceEeechhhHHhh-cC
Confidence 9999985431 2456789999999999999999 78888 45899999999999999999999999999865 45
Q ss_pred ChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002747 174 NDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWS 253 (885)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (885)
.+..++++.....+..-+.......-.-+++-......+..-+..++..+..|+.+.+.++.++.+......+...+...
T Consensus 151 kD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdr 230 (1200)
T KOG0964|consen 151 KDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDR 230 (1200)
T ss_pred CcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhh
Confidence 67788888887776666655555544444444444555555566666677777777777777777777666666666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hH
Q 002747 254 WVYDVDRQLKEQTLKIEKLKDR-------IPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEK--------------TS 312 (885)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 312 (885)
.+..+...+..+.......-.. +...+..+..+..++.+++..+..+......+..+ +.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 4444444444444333222221 11122222222222222222222222222211111 11
Q ss_pred HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 002747 313 EV--------------RRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQE------------- 365 (885)
Q Consensus 313 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 365 (885)
++ ...+..+...+.....++..+.-.+..+..+-..+..++..++.....+-.
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e 390 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE 390 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence 11 112233333344444444444444444333333344444443332222211
Q ss_pred --------------HHH------HhhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002747 366 --------------QHV------RNTQAEESEIEAKLKEL--------------QCEIDAANITLSRMKEEDSALSEKLS 411 (885)
Q Consensus 366 --------------~~~------~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~l~~~~~ 411 (885)
.+. .....++..++..+... ..++..+.+....+..++.++...+.
T Consensus 391 RDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk 470 (1200)
T KOG0964|consen 391 RDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRK 470 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00011111222222211 22222222333344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCCCCCcccccccEEecCCCCh
Q 002747 412 KEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTW 491 (885)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (885)
.+|.+-..++..+..+..+++..+..+...-.. ... .++......+.... ..+++|++++++.|++ .|
T Consensus 471 ~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r------~v~-nGi~~v~~I~e~~k---~ngv~G~v~eL~~v~~--~f 538 (1200)
T KOG0964|consen 471 ELWREEKKLRSLIANLEEDLSRAEKNLRATMNR------SVA-NGIDSVRKIKEELK---PNGVFGTVYELIKVPN--KF 538 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhh-hhhHHHHHHHHHhc---ccccceehhhhhcCCH--HH
Confidence 666666666666666666665555555443221 000 12222112222222 2357899999999854 89
Q ss_pred HHHHHHHHccccCeEEecChhhHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCC-CCCCchhhccccCchHHHHH
Q 002747 492 APAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPH-TKHPTTLSVLQSDNPTVINV 570 (885)
Q Consensus 492 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 570 (885)
..+++.+.|+.+.++||.+...+..+...+...++++++|+|+....+ +....|. +...|+++.+.+++.. ..+
T Consensus 539 ~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~----r~v~yp~~sdaiPli~kl~y~p~f-dka 613 (1200)
T KOG0964|consen 539 KTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA----RDVEYPKDSDAIPLISKLRYEPQF-DKA 613 (1200)
T ss_pred HhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch----hhccCCCCCCccchHHHhCcchhh-HHH
Confidence 999999999999999999999998888888888889999998765433 2222222 4556778888876532 222
Q ss_pred hhccCCcceEEEeCChHHHHHHhhhcCCCCcceEEcccCCeeeecCCcccccccccccC--CccccCChHHHHHHHHHHH
Q 002747 571 LVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLR--TGRLCGSYDEKIKDLERAA 648 (885)
Q Consensus 571 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~i 648 (885)
+. +.++++++|.++..+..++....+ .+||++|+.+...|.+.++....++.+ ..........++.++++.+
T Consensus 614 ~k--~Vfgktivcrdl~qa~~~ak~~~l----n~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~~~~~~~~~~~l~~~L 687 (1200)
T KOG0964|consen 614 LK--HVFGKTIVCRDLEQALRLAKKHEL----NCITLSGDQVSKKGVLTGGYEDQKRSRLELLKNVNESRSELKELQESL 687 (1200)
T ss_pred HH--HHhCceEEeccHHHHHHHHHhcCC----CeEEeccceecccCCccccchhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 22 234679999999999888876665 689999999988888876654332211 1122234455566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHHH
Q 002747 649 LHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQE 728 (885)
Q Consensus 649 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 728 (885)
..++..+.....++..+...++.++..+..+......+...+..+..+...+...+.. ....+..+...+..+..
T Consensus 688 ~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~-----k~~~Le~i~~~l~~~~~ 762 (1200)
T KOG0964|consen 688 DEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEP-----KGKELEEIKTSLHKLES 762 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH-----HHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666655555555555555555555444444 33344444444443333
Q ss_pred HHH
Q 002747 729 EIQ 731 (885)
Q Consensus 729 ~~~ 731 (885)
..+
T Consensus 763 ~~~ 765 (1200)
T KOG0964|consen 763 QSN 765 (1200)
T ss_pred HHH
Confidence 333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=1.5e-45 Score=451.52 Aligned_cols=574 Identities=18% Similarity=0.229 Sum_probs=324.4
Q ss_pred eeeEEEEEeccccc-ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhc-----CCceeEEEE
Q 002747 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVEV 94 (885)
Q Consensus 21 ~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~-----~~~~~~v~l 94 (885)
+|++|.|.||++|. .++|+|+||+|+|+||||||||||+|||+||||+.+....|+..+.++|+. +...+.|.+
T Consensus 1 ~i~~l~l~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~~~~r~~~~~~~i~~~~~~~~~~~~~v~~ 80 (1164)
T TIGR02169 1 YIERIELENFKSFGKKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSSKAMRAERLSDLISNGKNGQSGNEAYVTV 80 (1164)
T ss_pred CeeEEEEeCeeeECCeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchhhhhhhhhHHHhhcccccCCCCceEEEEE
Confidence 58999999999997 589999999999999999999999999999999988766788778888877 345789999
Q ss_pred EEEeCCCCCCCcccCCCeEEEEEEee---CCc-ceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhh
Q 002747 95 ELKNRGEDAFKPEIFGDSIIIERRIT---EST-STTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFL 170 (885)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~---~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 170 (885)
+|.++++. +++.+.|.|.+. +|. +.|++ ||.++ +..++..++...|+++..+. ++.|+.+..|+
T Consensus 81 ~f~~~~~~------~~~~~~i~r~~~~~~~~~~~~~~~---n~~~~--~~~~~~~~l~~~~~~~~~~~-~~~qg~~~~~~ 148 (1164)
T TIGR02169 81 TFKNDDGK------FPDELEVVRRLKVTDDGKYSYYYL---NGQRV--RLSEIHDFLAAAGIYPEGYN-VVLQGDVTDFI 148 (1164)
T ss_pred EEEcCCCC------CCCcEEEEEEEEEcCCCCcceEEE---CCccc--cHHHHHHHHHHcCCCcCcce-EEecchHHHHH
Confidence 99876432 114578887654 344 67887 68777 45789999999999887654 57799999988
Q ss_pred hcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 171 HSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKL 250 (885)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 250 (885)
.. .+..+..++....++..+...+......+..+.+.+.++...+..+..++..+....+...++..+...+.......
T Consensus 149 ~~-~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~~~~ 227 (1164)
T TIGR02169 149 SM-SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227 (1164)
T ss_pred CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 45567777777777888888999999999999999999999999999999888888887776666666655544444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhhHHHH
Q 002747 251 AWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIA---------------VMVEKTSEVR 315 (885)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 315 (885)
....+..+...+......+..+...+..+...+..+...+..+...+..+...+. .+...+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (1164)
T TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE 307 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 3333333333444334333333333333333333333332222222222222221 1112222222
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH------HhhHHHH
Q 002747 316 RRKDELQQSI-------SLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQE-------QHV------RNTQAEE 375 (885)
Q Consensus 316 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~------~~~~~~~ 375 (885)
..+..+...+ ..+..++..+...+......+..+...+..+...+..+.. .+. .......
T Consensus 308 ~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 387 (1164)
T TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 2222222222222222222222222222211221111111 110 0001111
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--
Q 002747 376 SEIEAKLKE-------LQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQT-- 446 (885)
Q Consensus 376 ~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~-- 446 (885)
..+...+.. +...+..+...+..+...+..+...+..+..++..+...+..+...+..+...+..+.....
T Consensus 388 ~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 467 (1164)
T TIGR02169 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222222 22222222233333333333333344444433333333333332222222222211111100
Q ss_pred ------------Cc----------cc-------cCCcc-cHHHHHHHHHhhcCCCCCCCcccccccEEecCCCChHHHHH
Q 002747 447 ------------NK----------VT-------AFGGD-RVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVE 496 (885)
Q Consensus 447 ------------~~----------~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 496 (885)
.. .. .+.+. .....+..+. . .....++|.+.+++.| + +.|..|++
T Consensus 468 ~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~i~~~~--~-~~~~g~~g~l~dli~v-~-~~y~~Aie 542 (1164)
T TIGR02169 468 EQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVL--K-ASIQGVHGTVAQLGSV-G-ERYATAIE 542 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHH--h-cCCCCceecHHHhcCc-C-HHHHHHHH
Confidence 00 00 00000 0000111111 1 1123456778888888 4 68999999
Q ss_pred HHHccccCeEEecChhhHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCC-CCCCCCCCchhhccccCchHHHHHhhccC
Q 002747 497 QAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHH-MLPHTKHPTTLSVLQSDNPTVINVLVDMG 575 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 575 (885)
.++|+.+.++||.+..++..+..+++..+.++++|+|++...+.. .+.. ..+.+...++++.+.+++. +..++. .
T Consensus 543 ~~lg~~l~~ivv~~~~~a~~~i~~l~~~~~gr~tflpl~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~--~ 618 (1164)
T TIGR02169 543 VAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDER-RDLSILSEDGVIGFAVDLVEFDPK-YEPAFK--Y 618 (1164)
T ss_pred HHhhhhhCCEEECCHHHHHHHHHHHHhcCCCCeeeccHhhcCCCC-CCcccccCCCchHHHHHHccCcHH-HHHHHH--H
Confidence 999998899999999999999999999889999999876443210 0100 0111222334455555432 222211 1
Q ss_pred CcceEEEeCChHHHHHHhhhcCCCCcceEEcccCCeeeecCCccccc
Q 002747 576 SAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTIL 622 (885)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 622 (885)
-++++++|++...+..+.. +. .+||++|+++.++|.+.++.
T Consensus 619 ~lg~~~v~~~l~~a~~~~~--~~----~~vTldG~~~~~~G~~tgG~ 659 (1164)
T TIGR02169 619 VFGDTLVVEDIEAARRLMG--KY----RMVTLEGELFEKSGAMTGGS 659 (1164)
T ss_pred HCCCeEEEcCHHHHHHHhc--CC----cEEEeCceeEcCCcCccCCC
Confidence 1345789999988887763 22 68999999998888776554
No 7
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7e-43 Score=367.17 Aligned_cols=687 Identities=16% Similarity=0.206 Sum_probs=418.8
Q ss_pred CceeeEEEEEeccccc-ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEE
Q 002747 19 AGTITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (885)
||+|..|+|.||++|. .+.|-|...||+|+||||||||++||||.||||..++. .|+..++++|+..+..+-|++.|.
T Consensus 1 ~g~L~~lEieNFKSYkGh~~iGPF~~FTaIIGPNGSGKSNlMDAISFVLGekss~-LR~~~lkdLIyg~~i~~~v~l~Y~ 79 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGHQVIGPFDRFTAIIGPNGSGKSNLMDAISFVLGEKSSH-LRVSHLKDLIYGKPIRKPVTLKYE 79 (1141)
T ss_pred CCceeeeehhccccccCceeecCchhceeeeCCCCCchHHHHHHHHHHhcCCCcc-cccchHHHHhcCCccCCchhheee
Confidence 7999999999999995 45563333899999999999999999999999998886 799999999996555667776666
Q ss_pred eCCCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhhcCChhh
Q 002747 98 NRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGNDKD 177 (885)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 177 (885)
-+ +|....++|.+.+|.++|.| +|..++ ..+|...+..+|+-+....|.+-||.+... ....+..
T Consensus 80 ~~---------dg~~~~F~R~I~~G~seY~I---Dne~VT--~eeY~~eLekinIlVkARNFLVFQGdVE~I-A~k~PkE 144 (1141)
T KOG0018|consen 80 EG---------DGETRRFTRAINGGTSEYMI---DNEIVT--REEYLEELEKINILVKARNFLVFQGDVEKI-AGKNPKE 144 (1141)
T ss_pred cC---------CchhhhhhhhhcCCceeEEE---cceecc--HHHHHHHHhhcceeeeeeeEEEecChHHHH-hccCHHH
Confidence 54 34667899988899999999 788884 478999999999999888999999988874 3456667
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002747 178 KFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYD 257 (885)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (885)
.-.+|..-.+-..+...++.+..++..+.......-.....+..+....+......+.+..+..+..........+.+..
T Consensus 145 lt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfh 224 (1141)
T KOG0018|consen 145 LTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFH 224 (1141)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777888888888888888888887888888888888888788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------------HHHHHH
Q 002747 258 VDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRK-------------DELQQS 324 (885)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 324 (885)
+...+.....++..+...+..+...++.....+.....+.......+......+......+ ......
T Consensus 225 vE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~r 304 (1141)
T KOG0018|consen 225 VEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKR 304 (1141)
T ss_pred hhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhH
Confidence 8888888888887777777776666655555544444333332222222222222221111 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------------------------HHHH
Q 002747 325 ISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQ----------------------------AEES 376 (885)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------~~~~ 376 (885)
+......+...+..+......+..+..++..+......+..++..... .++.
T Consensus 305 l~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~~~el~ 384 (1141)
T KOG0018|consen 305 LEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEALEELE 384 (1141)
T ss_pred HHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhhHHHHH
Confidence 333333333333333333333333333333333332222222211110 0000
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH
Q 002747 377 EI-------EAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKK--------------CREIR 435 (885)
Q Consensus 377 ~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~--------------~~~l~ 435 (885)
-+ +..+........++.+++..+...+..+......+...+..+......+..+ ...+.
T Consensus 385 ~ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n 464 (1141)
T KOG0018|consen 385 VLNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELN 464 (1141)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHH
Confidence 00 0011111111122222222222222222222222222222222222222222 22222
Q ss_pred HHHHHHHhccCCccccC-CcccHHHHHHHHHhhcCCCCCCCcccccccEEecCCCChHHHHHHHHccccCeEEecChhhH
Q 002747 436 SEIRELQQHQTNKVTAF-GGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDA 514 (885)
Q Consensus 436 ~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (885)
.++.............. .+..-......+.....+|++ ++|.+.++|.... ..|..|+..++|..+.+++|.+..++
T Consensus 465 ~eL~~~~~ql~das~dr~e~sR~~~~~eave~lKr~fPg-v~GrviDLc~pt~-kkyeiAvt~~Lgk~~daIiVdte~ta 542 (1141)
T KOG0018|consen 465 EELVEVLDQLLDASADRHEGSRRSRKQEAVEALKRLFPG-VYGRVIDLCQPTQ-KKYEIAVTVVLGKNMDAIIVDTEATA 542 (1141)
T ss_pred HHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHHHHhCCC-ccchhhhcccccH-HHHHHHHHHHHhcccceEEeccHHHH
Confidence 22222222111111111 101222334445555555543 4588888877654 67889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCCCCCCCCchhhccccCchHHHHHhhccCCcceEEEeCChHHHHHHhh
Q 002747 515 LLLRGCAREANYNHLQIIIYDFSRPRLSLPHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAF 594 (885)
Q Consensus 515 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 594 (885)
..|+.+++.+..++.+|+|++............ ...++.-+++.+.+.+..-..++. .+++.++|+++..++.+++
T Consensus 543 ~~CI~ylKeqr~~~~TFlPld~i~v~~~~e~lr-~~~g~rlv~Dvi~ye~e~eka~~~---a~gn~Lvcds~e~Ar~l~y 618 (1141)
T KOG0018|consen 543 RDCIQYLKEQRLEPMTFLPLDSIRVKPVNEKLR-ELGGVRLVIDVINYEPEYEKAVQF---ACGNALVCDSVEDARDLAY 618 (1141)
T ss_pred HHHHHHHHHhccCCccccchhhhhcCccccccc-CcCCeEEEEEecCCCHHHHHHHHH---HhccceecCCHHHHHHhhh
Confidence 999999999998888998877643221111111 224455567777776543222222 2346999999999999999
Q ss_pred hcCCCCcceEEcccCCeeeecCCcccccccccccCCccccCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 002747 595 EQRISNLKEVYTLDGHKMFSRGSVQTILPLNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRK---RKRDSEERLQD 671 (885)
Q Consensus 595 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~l~~---~~~~~~~~~~~ 671 (885)
.+.++ ..+++++|..+..+|.++++....+ |+- ..+..|......+..++..+.. +....+..+..
T Consensus 619 ~~~~r--~k~valdGtl~~ksGlmsGG~s~~~-wde--------k~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~ 687 (1141)
T KOG0018|consen 619 GGEIR--FKVVALDGTLIHKSGLMSGGSSGAK-WDE--------KEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHG 687 (1141)
T ss_pred ccccc--ceEEEeeeeEEeccceecCCccCCC-cCH--------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 87753 3789999998888887776665522 321 2233333333333333333322 34444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 672 LQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFS 743 (885)
Q Consensus 672 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 743 (885)
++.++.....++..+...+...+.++......+.. ...++..+...+...+..+.+++..+..+...
T Consensus 688 le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 688 LEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666677666666666 66666666666666666666666655554444
No 8
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-42 Score=362.96 Aligned_cols=536 Identities=20% Similarity=0.255 Sum_probs=367.6
Q ss_pred CCCCCCCceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEE
Q 002747 13 GPQRSGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMV 92 (885)
Q Consensus 13 ~~~~~~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v 92 (885)
++++|..|.|.+|.++||-+|...++.|+|.+|+|+||||||||||+.|||.||||+|...+|+.....||+.|++.+.|
T Consensus 13 ~~~sf~~GsIvrI~l~NF~Ty~~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~Pk~lGRak~VgeyIK~G~~~g~I 92 (1072)
T KOG0979|consen 13 NYSSFPDGSIVRIELHNFLTYDHTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEYIKRGEDEGYI 92 (1072)
T ss_pred CcccCCCCceEEEEEeeeeeeeeeeecCCCceeeEECCCCCCchHHHHHHHHHcCCChhhccchhHHHHHHhcCCccceE
Confidence 44458889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhh
Q 002747 93 EVELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 171 (885)
++++-+.+ ..++|+|.+. .+.+.|.| ||..+ +.+.+.+++..|+++++|+|.|++|+++..|..
T Consensus 93 EI~l~~~~----------e~~~ItR~I~~~k~S~y~i---N~~a~--t~s~i~elv~~fNIQi~NLCqFLpQDkV~EFa~ 157 (1072)
T KOG0979|consen 93 EIELKDKD----------ETLTITRLISRDKESKYFI---NDSAT--TKSEIEELVAHFNIQIDNLCQFLPQDKVKEFAR 157 (1072)
T ss_pred EEEEecCC----------CceEEEEEEeecCCcceee---ccchh--hhHHHHHHHHHHhcccCchhhhccHHHHHHHHc
Confidence 99988763 5689999999 77799999 56656 568999999999999999999999999999987
Q ss_pred cCChhhHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 172 SGNDKDKFKFFFKA---TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKK 248 (885)
Q Consensus 172 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (885)
.. ++..+.....+ ..+-.....|..+..+...+...+......+..+++++..+...++.+.+.......+..+..
T Consensus 158 L~-pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~ 236 (1072)
T KOG0979|consen 158 LS-PIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEK 236 (1072)
T ss_pred CC-hHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 34444443333 335566677888888889999999999999999999999999999999988889999999988
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002747 249 KLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLA 328 (885)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (885)
...+..+......+.........+...+..+.+....+......++.+..+....+......+..........-..+...
T Consensus 237 k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~ 316 (1072)
T KOG0979|consen 237 KKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEI 316 (1072)
T ss_pred hccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002747 329 TKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSALSE 408 (885)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 408 (885)
...+..+...+..+...-...+.++......+.+++..+..... ......+..++. .++.........-..
T Consensus 317 ~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~--~e~~~~~~~ei~-------~~~~~~~~~~~~~~~ 387 (1072)
T KOG0979|consen 317 EDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED--PENPVEEDQEIM-------KEVLQKKSSKLRDSR 387 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--ccccchhHHHHH-------HHHHHHHhhhhhhhh
Confidence 77777777777766666666666666666666666554421100 000011111111 111111100000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCccccCCcccHHHHHHHHHhhcCCCCCCCcccccccEEec
Q 002747 409 KLSKEKNEIRRISDEIEDYDKKCREIRSEIR--ELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIGSHVTLV 486 (885)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (885)
+..+...........+.....++.......+ .... ...+. ..+..++.++..+...|..++++|..--+.+.
T Consensus 388 ~~id~~~~~~~~~~~l~~~kr~~~~~~~~~~~k~~~~-----l~~~~-~d~~dAy~wlrenr~~FK~~vyeP~~m~l~~k 461 (1072)
T KOG0979|consen 388 QEIDAEQLKSQKLRDLENKKRKLKQNSDLNRQKRYRV-----LRQGS-SDAYDAYQWLRENRSEFKDEVYEPPIMTLNVK 461 (1072)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-----hccCc-hHHHHHHHHHHHCHHHhcccccCCceEEEecC
Confidence 0000000011111111111111111111000 0111 11111 45567788888888888888999987788888
Q ss_pred CCCChHHHHHHHHcc-ccCeEEecChhhHHHHHHHHHHhCCCCccE--EEEec--CCCCCCCCCCCCCCCCCCchhhccc
Q 002747 487 NGDTWAPAVEQAIGR-LLNAFIVTDHKDALLLRGCAREANYNHLQI--IIYDF--SRPRLSLPHHMLPHTKHPTTLSVLQ 561 (885)
Q Consensus 487 ~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ 561 (885)
+ ..++.+++..+|- .+.+|+|.+.++...+...+....+.-.+. +..+. +....+.+...+...|+...++.+.
T Consensus 462 ~-~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~i~d~k~~vn~~~~~~~~~k~~d~~p~~sre~l~~lGF~gyls~f~ 540 (1072)
T KOG0979|consen 462 N-AEFAKYLENFVGFNDLKAFICCDSEDYLLFVKKIKDEKWRVNASEVIPREKKYADKIPAQSREELKRLGFEGYLSNFI 540 (1072)
T ss_pred C-hHHHHHHHcccCccccceeeeechHHHHHHHHHhhhcceeeeceeccccccccccCCCccCHHHHHhcChHHHhhhhh
Confidence 8 8888889888875 577899999988766666555431111111 11110 0000011111122245566666666
Q ss_pred cCchHHHHHhhccCCcceE
Q 002747 562 SDNPTVINVLVDMGSAERQ 580 (885)
Q Consensus 562 ~~~~~~~~~l~~~~~~~~~ 580 (885)
..+..+..+|+....+.+.
T Consensus 541 ~~p~~vm~~Lc~~~~ih~I 559 (1072)
T KOG0979|consen 541 EAPEPVMSYLCNVSKIHRI 559 (1072)
T ss_pred cCcHHHHHHHHHhcccccc
Confidence 6677788888876555543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=7.5e-41 Score=412.33 Aligned_cols=248 Identities=21% Similarity=0.331 Sum_probs=191.2
Q ss_pred eeeEEEEEeccccc-ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCC------ceeEEE
Q 002747 21 TITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC------SYAMVE 93 (885)
Q Consensus 21 ~i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~------~~~~v~ 93 (885)
+|.+|.|.||++|. ..+|+|+||+|+|+|||||||||||+||+||||+.++...|+.+..++|+.|+ ..+.|.
T Consensus 1 ~i~~l~~~nf~s~~~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~~~~~~~~~~~v~ 80 (1179)
T TIGR02168 1 RLKKLELAGFKSFADPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGSETRKPLSLAEVE 80 (1179)
T ss_pred CeeEEEEeCccccCCCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCCcccCCCCeeEEE
Confidence 48999999999995 57999999999999999999999999999999998877789888889998886 357899
Q ss_pred EEEEeCCCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhhc
Q 002747 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (885)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 172 (885)
++|.+.+. +.|.+....++|.|.+. +|.+.|++ +|.++ +..++..++..+|++.++ +.+++|+.+..|+..
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~i~r~~~~~~~~~~~~---~~~~~--~~~~~~~~l~~~~i~~~~-~~~~~q~~~~~~~~~ 152 (1179)
T TIGR02168 81 LVFDNSDG--LLPGADYSEISITRRLYRDGESEYFI---NGQPC--RLKDIQDLFLDTGLGKRS-YSIIEQGKISEIIEA 152 (1179)
T ss_pred EEEecCCC--CCCCCCCCeEEEEEEEeeCCCceeeE---CCCcc--cHHHHHHHHhccCCCccc-chheecccHHHHHcC
Confidence 99986532 22211235789999988 67888888 57666 446788999999998865 468999999999966
Q ss_pred CChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002747 173 GNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAW 252 (885)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (885)
.+..++..+....++..+...+..+..++.++.+.+.++..++..+..+.+.++.......++..+...+.........
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (1179)
T TIGR02168 153 -KPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLV 231 (1179)
T ss_pred -CHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668888888888888999999999999999999999999999999988888887777666666655555444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 002747 253 SWVYDVDRQLKEQTLKIEKLKDRIP 277 (885)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (885)
..+..+...+..+...+..+...+.
T Consensus 232 ~~l~~~~~~~~~~~~~~~~~~~~~~ 256 (1179)
T TIGR02168 232 LRLEELREELEELQEELKEAEEELE 256 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=3.1e-31 Score=310.80 Aligned_cols=152 Identities=26% Similarity=0.377 Sum_probs=113.8
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.|.||++|++.+|+|+||+|+|+||||||||||++||+|||||.++. .....++++.|...+.|.++|.++
T Consensus 1 M~i~~l~l~nf~~~~~~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~---~~~~~~~~~~~~~~~~v~~~f~~~ 77 (880)
T PRK02224 1 MRFDRVRLENFKCYADADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKAL---DDTLDDVITIGAEEAEIELWFEHA 77 (880)
T ss_pred CeEEEEEEECcccccceEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc---cccHHHHHhCCCCcEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999999998763 234567888999899999999976
Q ss_pred CCCCCCcccCCCeEEEEEEee-CCc----ceEEEEcCCCccccccHHHHHHH-HHHcCCCC--CCCeeeechhhHhHhhh
Q 002747 100 GEDAFKPEIFGDSIIIERRIT-EST----STTVLKDHQGKRVASRKQELLEL-IDHFNIDV--ENPCVIMSQDKSREFLH 171 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~----~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~q~~~~~~~~ 171 (885)
| ..|.|.|.+. .|. ..+++.+ |.....+...+... ...+|++. +...++++||.+..|+.
T Consensus 78 ~----------~~~~i~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~llg~~~~~f~~~~~i~Qge~~~~l~ 145 (880)
T PRK02224 78 G----------GEYHIERRVRLSGDRATTAKCVLET--PEGTIDGARDVREEVTELLRMDAEAFVNCAYVRQGEVNKLIN 145 (880)
T ss_pred C----------EEEEEEEEEecCCCCcccceeEEeC--CCccccChHHHHHHHHHHHCCCHHHhcceeEeeccChHHHHc
Confidence 3 5789999986 332 2344333 33333344454443 33456553 34567899999999996
Q ss_pred cCChhhHHHHHHhhhH
Q 002747 172 SGNDKDKFKFFFKATL 187 (885)
Q Consensus 172 ~~~~~~~~~~~~~~~~ 187 (885)
. .+..+...+.....
T Consensus 146 ~-~p~~R~~ii~~l~~ 160 (880)
T PRK02224 146 A-TPSDRQDMIDDLLQ 160 (880)
T ss_pred C-CHHHHHHHHHHHhC
Confidence 5 45566666655544
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=2.2e-28 Score=287.93 Aligned_cols=164 Identities=22% Similarity=0.324 Sum_probs=118.4
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.|.||++|.+.+|+|+||+|+|+||||||||||++||.|||||.++...++....++++.|.+.+.|.++|+.+
T Consensus 1 m~i~~l~i~nf~~~~~~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~ 80 (880)
T PRK03918 1 MKIEELKIKNFRSHKSSVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKPKGLKKDDFTRIGGSGTEIELKFEKN 80 (880)
T ss_pred CeeEEEEEeCccCccCceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCccccChhhcccCCCCCEEEEEEEEEC
Confidence 89999999999999989999999999999999999999999999999986444344444567888888899999999876
Q ss_pred CCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCc-cccccHHHHHHHHHH-cCCCCCCCeeeechhhHhHhhhcCChhh
Q 002747 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGK-RVASRKQELLELIDH-FNIDVENPCVIMSQDKSREFLHSGNDKD 177 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~~~~~~~~~ 177 (885)
| ..|+|.|.+..+.+.+.+. +|. .+..+..++...+.. ++.+.+...+|++||.+..|+. .+..
T Consensus 81 ~----------~~~~i~R~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~~~Qg~~~~~~~--~~~~ 146 (880)
T PRK03918 81 G----------RKYRIVRSFNRGESYLKYL--DGSEVLEEGDSSVREWVERLIPYHVFLNAIYIRQGEIDAILE--SDES 146 (880)
T ss_pred C----------eEEEEEEEEcCCceEEEEC--CCCeeecccHHHHHHHHHHhcCHHHhceeEEEeccchHHHhc--CcHH
Confidence 3 6799999987544443332 342 333344555554443 4444444567899999999986 3455
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 002747 178 KFKFFFKATLLQQVNDLLQS 197 (885)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~ 197 (885)
+.+.+....++..+......
T Consensus 147 r~~~~~~~~~~~~~~~~~~~ 166 (880)
T PRK03918 147 REKVVRQILGLDDYENAYKN 166 (880)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 65555554444444333333
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=5e-27 Score=274.63 Aligned_cols=172 Identities=23% Similarity=0.370 Sum_probs=126.0
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.|.||++|+..+|+|+||+|+|+||||||||||++||+|||||.++ +....++++.|...+.|.++|..+
T Consensus 1 M~i~~l~l~NF~s~~~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~----~~~~~~~i~~~~~~~~V~l~f~~~ 76 (895)
T PRK01156 1 MIIKRIRLKNFLSHDDSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKR----TEKIEDMIKKGKNNLEVELEFRIG 76 (895)
T ss_pred CeEEEEEEeCccCCCCceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc----cccHHHHhhCCCCeEEEEEEEEEC
Confidence 8999999999999999999999999999999999999999999999998753 234578899999999999999876
Q ss_pred CCCCCCcccCCCeEEEEEEee-CCcc---eEEEEcCCCccccccHHHHHHHHH--HcCCCCC--CCeeeechhhHhHhhh
Q 002747 100 GEDAFKPEIFGDSIIIERRIT-ESTS---TTVLKDHQGKRVASRKQELLELID--HFNIDVE--NPCVIMSQDKSREFLH 171 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~---~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~q~~~~~~~~ 171 (885)
| ..|+|.|.|. .+++ ...+ ..+|.+++.+..++..++. .+|++.+ .+.+|++|+.+..|+.
T Consensus 77 g----------~~y~i~R~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~ 145 (895)
T PRK01156 77 G----------HVYQIRRSIERRGKGSRREAYI-KKDGSIIAEGFDDTTKYIEKNILGISKDVFLNSIFVGQGEMDSLIS 145 (895)
T ss_pred C----------EEEEEEEEEecCCCCCCceEEE-ecCCeeccccHHHHHHHHHHHHcCCCHHHhceeEEEeccchHHHHh
Confidence 3 5799999986 3321 2222 2278777666667777664 4565533 3467899999998885
Q ss_pred cCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002747 172 SGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDA 207 (885)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 207 (885)
. .+..+...+....++..+......+...+..+..
T Consensus 146 ~-~~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 180 (895)
T PRK01156 146 G-DPAQRKKILDEILEINSLERNYDKLKDVIDMLRA 180 (895)
T ss_pred C-CHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 4 4445666666555555554444444444433333
No 13
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.97 E-value=1.1e-22 Score=237.30 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=48.9
Q ss_pred CCceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
+..+|++|.+.||++|.+.+|+|++|+++|+|+|||||||+|+||+++|++..
T Consensus 3 ~~~ki~~l~l~N~~~~~~~~~~f~~~~~~l~G~NGaGKSTll~ai~~~l~~~~ 55 (1486)
T PRK04863 3 ERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDL 55 (1486)
T ss_pred CCceeeEEEEecccCccceEEEecCCeEEEECCCCCCHHHHHHHHHccccCCC
Confidence 34689999999999999999999999999999999999999999999987554
No 14
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.2e-23 Score=243.78 Aligned_cols=154 Identities=29% Similarity=0.422 Sum_probs=119.5
Q ss_pred ceeeEEEEEecccccceeEE--eCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEE
Q 002747 20 GTITRVRLENFMCHSSLQIE--LGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELK 97 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~--f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~ 97 (885)
|+|.+|.|.||++|.+.+|. |++|+|+|+||||||||||||||+|||||..+..+ .....++++.|...+.|.+.|.
T Consensus 1 M~i~~L~L~Nf~S~~~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~-~~~~~~~i~~g~~~~~V~l~F~ 79 (908)
T COG0419 1 MKILRLRLKNFRSFKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG-AFSLDDLIRAGEKSASVELEFE 79 (908)
T ss_pred CCCeeeehcccccccccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc-chhhhHHHhcCCccEEEEEEEE
Confidence 89999999999999988888 89999999999999999999999999999998643 5566889999998899999999
Q ss_pred eCCCCCCCcccCCCeEEEEEEeeCCcc----eEEEEcCCCccccccHHHHHHHHH-HcCCCC--CCCeeeechhhHhHhh
Q 002747 98 NRGEDAFKPEIFGDSIIIERRITESTS----TTVLKDHQGKRVASRKQELLELID-HFNIDV--ENPCVIMSQDKSREFL 170 (885)
Q Consensus 98 ~~~~~~~~~~~~~~~~~i~R~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~q~~~~~~~ 170 (885)
++| ..|.|.|.+..+.+ ...+...+|..+.....++...+. .+|++. +..++|++||.+..|+
T Consensus 80 ~~g----------~~Y~i~R~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl 149 (908)
T COG0419 80 VNG----------KKYRIEREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDAFL 149 (908)
T ss_pred ECC----------EEEEEEeeeccccCCCccchhhcccCcchhhhhhhhHHHHHHHHhCCCHHHHhHHheeccHhHHHHH
Confidence 764 67999998872222 222444567777655566775544 456653 3457899999999999
Q ss_pred hcCChhhHHHHHHhh
Q 002747 171 HSGNDKDKFKFFFKA 185 (885)
Q Consensus 171 ~~~~~~~~~~~~~~~ 185 (885)
...+. .+-..+...
T Consensus 150 ~~~~~-er~~il~~l 163 (908)
T COG0419 150 KSKPK-ERKEILDEL 163 (908)
T ss_pred hcCcH-HHHHHHHHH
Confidence 88654 333333333
No 15
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=7.5e-24 Score=254.22 Aligned_cols=141 Identities=16% Similarity=0.266 Sum_probs=94.8
Q ss_pred eeeEEEEEeccccc-----ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCcccccc-ch--hhhhcCCceeEE
Q 002747 21 TITRVRLENFMCHS-----SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAAT-LK--DFIKTGCSYAMV 92 (885)
Q Consensus 21 ~i~~i~l~nf~~~~-----~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~-~~--~~i~~~~~~~~v 92 (885)
+|.+|.|.||++|+ ..+|+|++|+++|+||||||||||++||+|||||..+...+|.. +. .+...+...+.|
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V 81 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQI 81 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhhee
Confidence 58899999999995 46899999999999999999999999999999987664333331 11 111223346889
Q ss_pred EEEEEeCCCCCCCcccCCCeEEEEEEee--CC-c-ceE------EEEcCCCcccc--ccHHHHH-HHHHHcCCCC--CCC
Q 002747 93 EVELKNRGEDAFKPEIFGDSIIIERRIT--ES-T-STT------VLKDHQGKRVA--SRKQELL-ELIDHFNIDV--ENP 157 (885)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~i~R~~~--~~-~-~~~------~~~~~~g~~~~--~~~~~~~-~~~~~~~~~~--~~~ 157 (885)
.+.|... .|..|+|.|.+. .+ + ..+ .....+|..++ ....++. .+...+|++. ..+
T Consensus 82 ~l~F~~~---------~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~e~~~~i~~~lGv~~~~f~~ 152 (1311)
T TIGR00606 82 RLQFRDV---------NGEECAVVRSMVCTQKTKKTEFKTLEGVITRYKHGEKVSLSSKCAEIDREMISHLGVSKAVLNN 152 (1311)
T ss_pred EEEEEcC---------CCCEEEEEeeeeeeeccCcccchhhhhhheecCCCceeeccccHHHHHHHHHHHhCCCHHHHhh
Confidence 9999643 246789999773 11 1 100 11112455432 3345665 5666778763 345
Q ss_pred eeeechhhHhHhh
Q 002747 158 CVIMSQDKSREFL 170 (885)
Q Consensus 158 ~~~~~q~~~~~~~ 170 (885)
.+|++||.+.+++
T Consensus 153 vi~~~Qge~~~~~ 165 (1311)
T TIGR00606 153 VIFCHQEDSNWPL 165 (1311)
T ss_pred ceeeCCccccccc
Confidence 6799999986443
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.96 E-value=1.3e-24 Score=242.44 Aligned_cols=198 Identities=15% Similarity=0.248 Sum_probs=128.9
Q ss_pred CceeeEEEEEecccccc--eeEEeC-CceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhh-cCCceeEEEE
Q 002747 19 AGTITRVRLENFMCHSS--LQIELG-EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIK-TGCSYAMVEV 94 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~--~~i~f~-~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~-~~~~~~~v~l 94 (885)
||+|++|++.||++|++ .+|+|+ +|+|+|+||||||||||++||+|||||.+....+ ...++. .+...+.|.+
T Consensus 1 ~~~~~~l~l~nf~s~~~~~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~~---~~~~~~~~~~~~~~v~l 77 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQPIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDIK---KGQLINSINKKDLLVEL 77 (562)
T ss_pred CceEEEEEEEcccccCCCceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcCC---HHHhhccCCCCcEEEEE
Confidence 89999999999999975 478998 4999999999999999999999999998764222 234443 3456688999
Q ss_pred EEEeCCCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCcccc--ccHHHHHHHHHH-cCCCCCCC--eeeechhhHhHh
Q 002747 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVA--SRKQELLELIDH-FNIDVENP--CVIMSQDKSREF 169 (885)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-~~~~~~~~--~~~~~q~~~~~~ 169 (885)
+|..+| ..|.|.|.+..+...+++ +|.++. .+..++...+.. +|++...+ .++++|+.+..|
T Consensus 78 ~f~~~~----------~~y~i~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~g~~~~~f~~~v~l~q~~f~~f 144 (562)
T PHA02562 78 WFEYGE----------KEYYIKRGIKPNVFEIYC---NGKLLDESASSKDFQKYFEQMLGMNYKSFKQIVVLGTAGYVPF 144 (562)
T ss_pred EEEECC----------EEEEEEEeccCCeEEEec---CCEEEeccccHHHHHHHHHHHHCCCHHHHhHHheeccCchhhH
Confidence 998763 578999987644333333 566643 234567665555 45554332 457889999888
Q ss_pred hhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002747 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (885)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (885)
+...+ ..+...+.....+..+...-....+.+...+..+..+..++..+..++..++..+..+
T Consensus 145 ~~~~~-~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 145 MQLSA-PARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred hcCCh-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 76543 3444444444333333333333444555555555555555555555555544444443
No 17
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.95 E-value=9.2e-20 Score=212.83 Aligned_cols=161 Identities=20% Similarity=0.311 Sum_probs=114.9
Q ss_pred ceeeEEEEEecccc-cceeEEeC------CceEEEEcCCCCchHHHHHHHHHHhcCCCCCcccc-ccchhhhhcCCceeE
Q 002747 20 GTITRVRLENFMCH-SSLQIELG------EWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRA-ATLKDFIKTGCSYAM 91 (885)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~------~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~-~~~~~~i~~~~~~~~ 91 (885)
|+|.+|.|.||++| +..+|+|. .|+++|+||||||||||+|||+|+|||.+++..+. ...++++..|...+.
T Consensus 1 Mk~~~l~~~nf~s~~~~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~~~~~~~~~~~~~~~~~~~ 80 (1047)
T PRK10246 1 MKILSLRLKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECL 80 (1047)
T ss_pred CcceEEEeecceeEcCCceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCccccccchhhhhhCCCcceE
Confidence 89999999999999 57889994 58999999999999999999999999998864443 345788888888999
Q ss_pred EEEEEEeCCCCCCCcccCCCeEEEEEEee------CCc---ceEEEEc-CCCccccccHHHHHH-HHHHcCCCCCC--Ce
Q 002747 92 VEVELKNRGEDAFKPEIFGDSIIIERRIT------EST---STTVLKD-HQGKRVASRKQELLE-LIDHFNIDVEN--PC 158 (885)
Q Consensus 92 v~l~~~~~~~~~~~~~~~~~~~~i~R~~~------~~~---~~~~~~~-~~g~~~~~~~~~~~~-~~~~~~~~~~~--~~ 158 (885)
|+++|..+| ..|.|.|... +|+ ..+.+.. .+|..+..+..++.. +...+|++.+. ..
T Consensus 81 v~~~F~~~~----------~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~i~~llgl~~~~F~~~ 150 (1047)
T PRK10246 81 AEVEFEVKG----------EAYRAFWSQNRARNQPDGNLQAPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS 150 (1047)
T ss_pred EEEEEEECC----------eEEEEEeehhhcccCCCCccccccceeeEcCCCCeeccCchHHHHHHHHHhCCCHHHhhhh
Confidence 999998764 4577766432 111 1122222 345555545556554 44456766554 46
Q ss_pred eeechhhHhHhhhcCChhhHHHHHHhhhHHHHH
Q 002747 159 VIMSQDKSREFLHSGNDKDKFKFFFKATLLQQV 191 (885)
Q Consensus 159 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (885)
++++||.+..|+...+ .++-.++....++..+
T Consensus 151 v~l~QG~f~~fl~a~~-~eR~~il~~l~g~~~y 182 (1047)
T PRK10246 151 MLLSQGQFAAFLNAKP-KERAELLEELTGTEIY 182 (1047)
T ss_pred eeeccccHHHHHhCCh-HHHHHHHHHHhCcHHH
Confidence 8999999999998643 4555555555444333
No 18
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=5.3e-19 Score=208.75 Aligned_cols=183 Identities=21% Similarity=0.284 Sum_probs=122.8
Q ss_pred ceeeEEEEEeccccc-ceeEEeCC--ceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccc-cchhhhhcCCceeEEEEE
Q 002747 20 GTITRVRLENFMCHS-SLQIELGE--WVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAA-TLKDFIKTGCSYAMVEVE 95 (885)
Q Consensus 20 m~i~~i~l~nf~~~~-~~~i~f~~--~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~-~~~~~i~~~~~~~~v~l~ 95 (885)
|+|.+|+|.||++|. ..+|+|.+ |+++|+||||||||||+|||+|||||.++...+.. ...++...+...+.|+++
T Consensus 1 M~~~~L~l~nf~s~~~~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 80 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKGTHTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRSEVIRSLNSLYAAPSEAAFAELE 80 (1042)
T ss_pred CeeeEEEEeCeeccCCCceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCCccccccchhhcCCCCCeEEEEE
Confidence 899999999999996 45899988 99999999999999999999999999887543332 334555556677889999
Q ss_pred EEeCCCCCCCcccCCCeEEEEEEee------CCcceEEE----EcCCCccccccHHHHHHHH-HHcCCCCCCC--eeeec
Q 002747 96 LKNRGEDAFKPEIFGDSIIIERRIT------ESTSTTVL----KDHQGKRVASRKQELLELI-DHFNIDVENP--CVIMS 162 (885)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~------~~~~~~~~----~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 162 (885)
|..+| ..|.|.|.+. +|...+.+ ...+|..+..+..++...+ ..+|++...+ .++++
T Consensus 81 F~~~g----------~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~llGld~~~F~~~~~l~ 150 (1042)
T TIGR00618 81 FSLGT----------KIYRVHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLP 150 (1042)
T ss_pred EEECC----------EEEEEEEeeeeeccCCCCcchhhhhhhhcCCCCcccccchHHHHHHHHHHhCCCHHHHhhheeec
Confidence 98764 4566666543 12211111 1134565655666777644 4578876553 58999
Q ss_pred hhhHhHhhhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 163 QDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELE 213 (885)
Q Consensus 163 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 213 (885)
||.+..|+... +.++...+....++..+......+.+........+..+.
T Consensus 151 Qg~~~~fl~a~-~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~ 200 (1042)
T TIGR00618 151 QGEFAQFLKAK-SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLT 200 (1042)
T ss_pred ccchHHHHhCC-HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 456666665555444443333333333333333333333
No 19
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.94 E-value=4.4e-19 Score=211.06 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=60.2
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHH-HhcCCCC--C----ccccccchhhhhcCC-----
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCI-AFGCRAK--G----TQRAATLKDFIKTGC----- 87 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~-~l~~~~~--~----~~r~~~~~~~i~~~~----- 87 (885)
+++.++.|.||..|.+.+|+|++|+++|+|+|||||||+||+|.| +|.|+.. . ..++.++.++++.|.
T Consensus 2 w~~~R~gliN~~~~~~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~~~~rln~~~~~~r~~~~~l~~g~~~~~~ 81 (1353)
T TIGR02680 2 WRPHRAGLVNLWYYDEQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKLRPSRLEPDGDSRKRMAWNLLLGGVNHDE 81 (1353)
T ss_pred ceeeeEEEEEeccccceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCCCccccCCCCCccccHHHHHcCCCCCCCC
Confidence 468899999999999999999999999999999999999999664 5556432 1 235556777887665
Q ss_pred ceeEEEEEEEe
Q 002747 88 SYAMVEVELKN 98 (885)
Q Consensus 88 ~~~~v~l~~~~ 98 (885)
..+++.++|..
T Consensus 82 ~~~y~~~e~~~ 92 (1353)
T TIGR02680 82 RVGYLWLEFGR 92 (1353)
T ss_pred cceeEEEEeec
Confidence 23455555544
No 20
>PRK10869 recombination and repair protein; Provisional
Probab=99.91 E-value=7e-21 Score=204.81 Aligned_cols=140 Identities=21% Similarity=0.396 Sum_probs=108.1
Q ss_pred eeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCC
Q 002747 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (885)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (885)
||.+|.|.||+.|...+|+|+||+|+|+||||||||+|++||.|+||+++. .++|+.|+..+.|+++|+..+
T Consensus 1 ML~~L~I~nf~~i~~~~i~f~~glnvitGetGaGKS~ildAi~~llG~r~~--------~~~ir~g~~~a~Ve~~F~~~~ 72 (553)
T PRK10869 1 MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGRAE--------ASMVRPGATRADLCARFSLKD 72 (553)
T ss_pred CccEEEEcccccceeeEEecCCCcEEEECCCCCChHHHHHHHHHHhCCCcc--------cccccCCCCcEEEEEEEecCC
Confidence 588999999999999999999999999999999999999999999998664 478899999999999998643
Q ss_pred CC----CC---CcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCC---eeeechhhHhHh
Q 002747 101 ED----AF---KPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP---CVIMSQDKSREF 169 (885)
Q Consensus 101 ~~----~~---~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~q~~~~~~ 169 (885)
.. ++ -.+ +++.++|.|.+. +|++.|+| ||.++ +...+..+...+ +++... ...+.+...+.+
T Consensus 73 ~~~~~~~l~~~~~~-~~~~~~i~R~i~~~g~s~~~I---Ng~~v--~~~~l~~l~~~l-i~ihgQ~~~~~ll~~~~~~~l 145 (553)
T PRK10869 73 TPAALRWLEDNQLE-DGNECLLRRVISSDGRSRGFI---NGTPV--PLSQLRELGQLL-IQIHGQHAHQLLLKPEHQKTL 145 (553)
T ss_pred ChHHHHHHHhcCCC-CCCeEEEEEEEecCCcceEEE---CCeec--cHHHHHHHHHhh-hheeCcChHHHhcCHHHHHHH
Confidence 21 00 011 345789999988 78999999 78877 456777777666 443332 345666666666
Q ss_pred hhcCCh
Q 002747 170 LHSGND 175 (885)
Q Consensus 170 ~~~~~~ 175 (885)
+...++
T Consensus 146 LD~~~~ 151 (553)
T PRK10869 146 LDAYAN 151 (553)
T ss_pred HHHhcc
Confidence 665433
No 21
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.91 E-value=8.9e-21 Score=207.16 Aligned_cols=191 Identities=22% Similarity=0.322 Sum_probs=130.5
Q ss_pred eeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCC
Q 002747 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (885)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (885)
||.+|.|.||+.|...+|+|+||+|+|+||||||||+|++||.|++|++.. .++|+.|+..+.|.+.|.+.+
T Consensus 1 Ml~~l~i~nf~~~~~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~~~--------~~~i~~~~~~~~v~~~f~~~~ 72 (563)
T TIGR00634 1 MLTELRINNFALIRVLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQRAG--------ASRVRSGENRAVVEGRFTTES 72 (563)
T ss_pred CceEEEEcceeeeeeeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcCch--------HHHhcCCCCeEEEEEEEccCC
Confidence 588999999999999999999999999999999999999999999998753 578899999999999998643
Q ss_pred CCC--------CCcccC--CCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHh
Q 002747 101 EDA--------FKPEIF--GDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (885)
Q Consensus 101 ~~~--------~~~~~~--~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (885)
... +..+.. ++.++|.|.+. +|++.|+| ||.+++ ...+..+...+ +.+.+|.....+
T Consensus 73 ~~~~~~~~l~~~~~~~~~~~~~~ii~R~i~~~grs~~~i---Ng~~v~--~~~l~~l~~~l-------i~i~gQ~~~~~l 140 (563)
T TIGR00634 73 LDDADYPALQAIELEEEDEDGEVILRRSISRDGRSRAYL---NGKPVS--ASSLLEFTSEL-------LDLHGQHDQQLL 140 (563)
T ss_pred CchHHHHHHHhcCCCcCCCCCeEEEEEEEcCCCceEEEE---CCEEcc--HHHHHHHhcCe-------EEEECchHHHHh
Confidence 211 001112 35789999998 78999999 788884 46777776543 222333322222
Q ss_pred hhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002747 170 LHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME 234 (885)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 234 (885)
+ .+......+.....+..+...+......+..+...+.++.........+++.++.++++++
T Consensus 141 ~---~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 141 F---RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred c---CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 1 1112222222222233444555556666666666666666666666666666666666554
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.89 E-value=2.9e-18 Score=191.32 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=95.4
Q ss_pred ceeeEEEEEeccccc-ceeEEeC----CceEEEEcCCCCchHHHHHHHHHHhcCCCCC-ccccc-cch----hhhhc---
Q 002747 20 GTITRVRLENFMCHS-SLQIELG----EWVNFITGQNGSGKSAILTALCIAFGCRAKG-TQRAA-TLK----DFIKT--- 85 (885)
Q Consensus 20 m~i~~i~l~nf~~~~-~~~i~f~----~~~~~I~G~NgsGKSti~dai~~~l~~~~~~-~~r~~-~~~----~~i~~--- 85 (885)
|+|.+|.|.||+.|. ...|+|. +++++|+||||+|||||++||.|||||..+. ..|+. .+. ++++.
T Consensus 1 M~i~~l~l~nf~~~~~~~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~l~~~~n~~~~ 80 (650)
T TIGR03185 1 MIILQLTLENFGPYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQYLRGLINRQAG 80 (650)
T ss_pred CcccEEEEeceEEEcCCceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHHHHHHhcccCC
Confidence 899999999999994 4567774 3599999999999999999999999998754 23332 222 33332
Q ss_pred CCceeEEEEEEEeCCCCCCCcccCCCeEEEEEEee-C---CcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeee
Q 002747 86 GCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT-E---STSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIM 161 (885)
Q Consensus 86 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (885)
+...+.|.++|++.+.+ ....|+|.|.|. + .+..+.+.. +|.....-...+..++..+.......+|||
T Consensus 81 ~~~~~~V~l~f~~~~~~------~~~~y~i~R~w~~~~k~~~~~l~v~~-~~~~~~~~~~~~~~~i~~ilp~~~~~~FfF 153 (650)
T TIGR03185 81 KTNPASITLTFSVVEGG------KRHEYTLVRSWHINNKDVKEKLTVYK-DDEEDDSLNDIWDEFINELLPLELADLFFF 153 (650)
T ss_pred CCCCeEEEEEEEEccCC------ceEEEEEEEEecCCCCCCCCcEEEEE-CCcccchhhHHHHHHHHHhCCHhHHHHhcc
Confidence 23567899999865321 114689999986 2 223333332 342211112345556665533333458999
Q ss_pred chhhHhHhhhc
Q 002747 162 SQDKSREFLHS 172 (885)
Q Consensus 162 ~q~~~~~~~~~ 172 (885)
+++.+..+...
T Consensus 154 DGE~I~~la~~ 164 (650)
T TIGR03185 154 DGEKIEALANP 164 (650)
T ss_pred cHHHHHHHhcc
Confidence 99998877654
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=99.88 E-value=7.1e-16 Score=166.53 Aligned_cols=641 Identities=15% Similarity=0.191 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002747 192 NDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEK 271 (885)
Q Consensus 192 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (885)
...|+.+.+.+..+...+......+......+..+..++...+........+..+...+....-..+|..+.....++..
T Consensus 206 aT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~ 285 (1074)
T KOG0250|consen 206 ATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNN 285 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688899999999999999999999999999999999998888777777888888888878888999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 272 LKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVN 351 (885)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (885)
+...+...++.+..+...+......+..+...+...+..+..+.........++..+...+..+.......+.++.....
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n 365 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN 365 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 352 RVKGLEQQVHDIQEQHVRNTQAEE-SEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKK 430 (885)
Q Consensus 352 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 430 (885)
.+..+...+..+...+ ....... ..+..++.+.+.++..+..++..++..+..|..+.+++...+...+.+...+...
T Consensus 366 ~i~~~k~~~d~l~k~I-~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~ 444 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQI-ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGE 444 (1074)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888888888777 3333333 6667777777777777777777777777777777777777777677676666666
Q ss_pred HHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHhhcCCCCCCCccccc-ccEEecCCCChHHHHHHHHccccCeEEec
Q 002747 431 CREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIERHHHKFKSPPIGPIG-SHVTLVNGDTWAPAVEQAIGRLLNAFIVT 509 (885)
Q Consensus 431 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 509 (885)
+..+...+...... +..+.......... +|+-+ .++...+ ..+..+-..+.||.+..+.+.
T Consensus 445 i~~l~k~i~~~~~~----------------l~~lk~~k~dkvs~-FG~~m~~lL~~I~-r~~~~f~~~P~GPlG~~Vtl~ 506 (1074)
T KOG0250|consen 445 ILQLRKKIENISEE----------------LKDLKKTKTDKVSA-FGPNMPQLLRAIE-RRKRRFQTPPKGPLGKYVTLK 506 (1074)
T ss_pred HHHHHHHHHHHHHH----------------HHHHHhcccchhhh-cchhhHHHHHHHH-HHHhcCCCCCCCCccceeEec
Confidence 66666666554333 33333333222111 23221 2221111 111111123567766777788
Q ss_pred ChhhHHHHHHHHHHhCCCCccEEEEecCCC--------CCCCCCC--CCCCCCCCchh-hccccCchHHHHHhhccCCcc
Q 002747 510 DHKDALLLRGCAREANYNHLQIIIYDFSRP--------RLSLPHH--MLPHTKHPTTL-SVLQSDNPTVINVLVDMGSAE 578 (885)
Q Consensus 510 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~ 578 (885)
++.|+..+..++...-. .|++.+..+. ...++.. .+....+.+.. .....+...+.+++
T Consensus 507 ~~KWa~aIE~~L~n~ln---aFiv~sh~D~~~Lr~i~~~~~~~~~~ptIvvs~~~~~~y~~~~~p~~~~pTil------- 576 (1074)
T KOG0250|consen 507 EPKWALAIERCLGNLLN---AFIVTSHKDARILRAIMRRLKIPGNRPTIVVSSFTPFDYSVGRNPGYEFPTIL------- 576 (1074)
T ss_pred CcHHHHHHHHHHHHhhh---hheeCCHhhHHHHHHHHHHcCCCCCCCcEEEecCCccccccccCCCCCCCcee-------
Confidence 88998888877764211 2332221100 0011111 00001111111 11111101122332
Q ss_pred eEEEeCChHHHHHHhhhcCCCCcceEEcccC------------------CeeeecCCc-cccccc-ccccCCccccCChH
Q 002747 579 RQVLVRDYDVGKAVAFEQRISNLKEVYTLDG------------------HKMFSRGSV-QTILPL-NRRLRTGRLCGSYD 638 (885)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 638 (885)
+.+.++++.+.+.++...+++ .++.... ..+.+.|.. ..+++. ..+.........-.
T Consensus 577 ~~le~ddp~V~N~LID~s~iE---~~lLiEdk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~ 653 (1074)
T KOG0250|consen 577 DALEFDDPEVLNVLIDKSGIE---QVLLIEDKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPG 653 (1074)
T ss_pred eeeecCChHHHHHhhhhccce---eEEEecchHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCCCcc
Confidence 466788999999888877764 2232211 011111110 011110 00101000101112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchHH
Q 002747 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVDE 718 (885)
Q Consensus 639 ~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 718 (885)
.--......|..++..+..++.++..+......++..+..+...+..+...+..++..+.....++.+ +......
T Consensus 654 ~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~e-----l~n~~e~ 728 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTE-----LKNTAEE 728 (1074)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhhhh
Confidence 34568889999999999999999999999999999999999999999999999999999988888888 6552111
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002747 719 IS---QEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAH 795 (885)
Q Consensus 719 l~---~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (885)
.. ..++.+..++.....++......+..+..++..+......+...+...+..+......++.+..++......+..
T Consensus 729 ~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s 808 (1074)
T KOG0250|consen 729 KQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRS 808 (1074)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 12 234455555555555666666666666666666666666666666665555555555555454444433333222
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcceecccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC
Q 002747 796 YEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQYEH 872 (885)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 872 (885)
...... +.+.........+...+.....+............. ..+..+..+..+-....+++..+..+..++..
T Consensus 809 ~e~~~~-HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~--~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~ 882 (1074)
T KOG0250|consen 809 AEDEKR-HYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKART--ECPEEGIEIEALGKTVAEIKREIKRLKRQIQM 882 (1074)
T ss_pred hhhhhh-hHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhh--hCccccchhhcccchHHHHHHHHHHHHHHHHH
Confidence 222222 444444434555666666666555544433221111 11121223344444567777888887777654
No 24
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.87 E-value=2.3e-14 Score=145.98 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=66.9
Q ss_pred CCCceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcC-------CCCCc-cccccchhhh-----
Q 002747 17 SGAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGC-------RAKGT-QRAATLKDFI----- 83 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~-------~~~~~-~r~~~~~~~i----- 83 (885)
..-.++.+|++.|||.|..+.|+.--+-.+++|..||||||++|||..+|.. ++... -+..++..||
T Consensus 12 ~~~FRL~~iqliNWGTF~T~~~~~T~~G~LvTG~~GSGKSTLIDAITavLlP~~kl~~N~AA~A~t~~RSL~tYi~G~~r 91 (1104)
T COG4913 12 PGQFRLSRIQLINWGTFHTVDIPVTREGILVTGGSGSGKSTLIDAITAVLLPQGKLRFNSAAQANTPRRSLVTYIRGAWR 91 (1104)
T ss_pred CCceeeeEEEEeeccccceeeeeEeccceEEecCCCCCchhHHHHHHHHhcccchhhcccccccCCchhHHHHHHHHHHh
Confidence 3357899999999999998888876655899999999999999999988732 11110 0112333343
Q ss_pred ---------------hcCCceeEEEEEEEeCCCCCCCcccCCCeEEEEEEee
Q 002747 84 ---------------KTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRIT 120 (885)
Q Consensus 84 ---------------~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~ 120 (885)
++.+++.-|-++|+|+ +|.+.++.-.|.
T Consensus 92 aq~~~~~~~~~~~~LR~~a~YSlv~~~~~NG---------~~~~~TL~~iF~ 134 (1104)
T COG4913 92 AQEDPLQDQIVSTYLRPRATYSLVGLTYSNG---------EGVEHTLVAIFY 134 (1104)
T ss_pred hccCccccceeeeeeccccceEEEEEEeecC---------CCeeEEEEEEEE
Confidence 2233566677888885 456777777776
No 25
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=99.87 E-value=2.5e-15 Score=166.56 Aligned_cols=158 Identities=22% Similarity=0.299 Sum_probs=110.2
Q ss_pred CceeeEEEEEecccccc---eeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcC------Cce
Q 002747 19 AGTITRVRLENFMCHSS---LQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG------CSY 89 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~---~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~------~~~ 89 (885)
|..|.++.|.|+++|++ .+|.|..++|+|+||||+|||||++++.|+.+|..|...++ ..||+.. ...
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpnsk~---~~FiHdpkIage~ev~ 77 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNSKG---GSFIHDPKVAGETEVR 77 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCCcC---CCCCCCccccchhhhh
Confidence 56788899999999954 67899989999999999999999999999998887766665 3344432 235
Q ss_pred eEEEEEEEeCCCCCCCcccCCCeEEEEEEee-CCc-----------ceEEEEcCCCccccccHHHHH-HHHHHcCCC--C
Q 002747 90 AMVEVELKNRGEDAFKPEIFGDSIIIERRIT-EST-----------STTVLKDHQGKRVASRKQELL-ELIDHFNID--V 154 (885)
Q Consensus 90 ~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~-----------~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~--~ 154 (885)
++|.|.|.+. .|..+++.|++. ..+ .-+.+++..+..++....+++ .+...+|+. +
T Consensus 78 AqvkL~f~~~---------~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAI 148 (1294)
T KOG0962|consen 78 AQVKLAFTDV---------NGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAI 148 (1294)
T ss_pred heeeeeeecC---------CCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHH
Confidence 7899999876 357889999876 221 124454434444444455555 566677765 4
Q ss_pred CCCeeeechhhHhHhhhcCCh-hhHHHHHHhhhHH
Q 002747 155 ENPCVIMSQDKSREFLHSGND-KDKFKFFFKATLL 188 (885)
Q Consensus 155 ~~~~~~~~q~~~~~~~~~~~~-~~~~~~~~~~~~~ 188 (885)
.+++.|++|+.-.+++..... ..+|.-++.++.|
T Consensus 149 l~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky 183 (1294)
T KOG0962|consen 149 LENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKY 183 (1294)
T ss_pred HhhhheecccCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 456889999988877765433 3344444444433
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.86 E-value=1.7e-13 Score=163.38 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=33.3
Q ss_pred eEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCcccc
Q 002747 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRA 76 (885)
Q Consensus 37 ~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~ 76 (885)
+|.++ |.|-|+|.||+|||||+.+|.+.+|..|++..++
T Consensus 13 El~lD-G~t~i~GTNG~GKTTlLRlip~FYGa~p~rlv~k 51 (1201)
T PF12128_consen 13 ELKLD-GHTHICGTNGVGKTTLLRLIPFFYGADPSRLVPK 51 (1201)
T ss_pred EEecC-CceeeecCCCCcHHHHHHHHHHhcCCCccccCCc
Confidence 66767 7888889999999999999999999999875443
No 27
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.85 E-value=1.7e-14 Score=177.89 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=11.9
Q ss_pred CChHHHHHHHHccccCeEEecChhhH
Q 002747 489 DTWAPAVEQAIGRLLNAFIVTDHKDA 514 (885)
Q Consensus 489 ~~~~~a~~~~~~~~~~~~~~~~~~~~ 514 (885)
+.+.+++..++|.+ ++|.+...+
T Consensus 610 ~~~~~~~~~~lg~~---~v~~~l~~a 632 (1164)
T TIGR02169 610 PKYEPAFKYVFGDT---LVVEDIEAA 632 (1164)
T ss_pred HHHHHHHHHHCCCe---EEEcCHHHH
Confidence 34555555555543 556555444
No 28
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.85 E-value=2.1e-14 Score=171.11 Aligned_cols=68 Identities=15% Similarity=0.315 Sum_probs=43.2
Q ss_pred HhHhhhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002747 166 SREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (885)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (885)
+..|......+..+........+..+...+..+...+..+...+..+...+.....++..+...+..+
T Consensus 212 a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~ 279 (1163)
T COG1196 212 AERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL 279 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555666666667777777777777666666666666666666666665554
No 29
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.3e-17 Score=169.28 Aligned_cols=138 Identities=25% Similarity=0.431 Sum_probs=105.7
Q ss_pred eeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCC
Q 002747 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (885)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (885)
+|.+|.|.||.-+...+|+|.+|+|||+|..|+|||-|+|||.+|||++.+ .++|+.|.+.+.|+..|..+.
T Consensus 1 ML~~LsIknfaiIe~L~leF~~GltVlTGETGAGKSIiidAl~lllG~ra~--------~~~VR~G~~~a~v~a~F~~~~ 72 (557)
T COG0497 1 MLLELSIKNFAIIEELELEFEKGLTVLTGETGAGKSIIIDALGLLLGGRAD--------ASLVRHGAKRAEVEAIFDLDN 72 (557)
T ss_pred CCcEEeeeheeeeeeeeeeccCCceEEecCCCCcHhHHHHHHHHHhCCCCC--------cchhcCCCceeEEEEEecCCc
Confidence 478999999999999999999999999999999999999999999999987 479999999999999999871
Q ss_pred C---CCCC-ccc-CCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCC---eeeechhhHhHhhh
Q 002747 101 E---DAFK-PEI-FGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP---CVIMSQDKSREFLH 171 (885)
Q Consensus 101 ~---~~~~-~~~-~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~q~~~~~~~~ 171 (885)
. .|+. ..+ .++.+++.|.+. +|++.++| ||++|+ ...+..+...+ ++.... ...+.|+.-+.++.
T Consensus 73 ~~~~~~L~e~gie~~~~iilrR~i~~~GrSr~~I---Ng~~Vs--~~~L~~l~~~L-i~IHGQh~~q~Ll~~~~~r~lLD 146 (557)
T COG0497 73 PPARAWLEENGIEDDEEVILRRVISADGRSRAFI---NGQPVS--LAQLKELGQLL-IDIHGQHEHQSLLKPELQRQLLD 146 (557)
T ss_pred hHHHHHHHHcCCCCcCcEEEEEEEcCCCceeEEE---CCEEee--HHHHHHHHHhh-heeeccchHHHhcChHHHHHHHH
Confidence 1 1111 111 123788999998 88999999 788885 46777766665 332222 23455555555554
Q ss_pred c
Q 002747 172 S 172 (885)
Q Consensus 172 ~ 172 (885)
.
T Consensus 147 ~ 147 (557)
T COG0497 147 A 147 (557)
T ss_pred H
Confidence 4
No 30
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=1.8e-13 Score=143.31 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=89.2
Q ss_pred ceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEe
Q 002747 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKN 98 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~ 98 (885)
|+|++|+|.|||.|...+|+|.+. |++|+|+|.|||||||-+|.-+|||.|.+ .+-..+ ..+.|..++.+-+.. +
T Consensus 1 MrI~sl~I~gYGKFs~r~~df~~s~f~vI~G~NEAGKSTl~sFI~smlFGfP~~-sk~~~~--eP~~Gg~yGG~L~~~-~ 76 (984)
T COG4717 1 MRIQSLEIVGYGKFSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTS-SKYPRL--EPKQGGQYGGRLVAI-D 76 (984)
T ss_pred CceeEEEeeeccchhhhhhhccCCceEEEecCccccHHHHHHHHHHHHcCCCCC-CCCCCC--CcccCCCcccEEEEe-c
Confidence 899999999999999999999885 99999999999999999999998888853 121111 112344443322222 2
Q ss_pred CCCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHh
Q 002747 99 RGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (885)
Q Consensus 99 ~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (885)
. .|..|.|+|.-++......+..++|.+-. ...+..++...+-..+...|.|+-..+..+
T Consensus 77 ~---------~~~~~~IER~kgsa~gdvkvylpdG~v~~--~~~L~k~lg~iDR~tye~IfSFDv~gLQei 136 (984)
T COG4717 77 R---------EGGAYRIERNKGSAIGDVKVYLPDGNVGS--KTLLSKLLGSIDRNTYEAIFSFDVDGLQEI 136 (984)
T ss_pred C---------CCceEEEEeccCcccCCceEECCCCCccc--hHHHHHHHhhhhHHHHHHHHhcchhhhHHH
Confidence 1 24679999977655556677777886653 344555555443333333444444444443
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.2e-13 Score=146.03 Aligned_cols=175 Identities=16% Similarity=0.255 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Q 002747 257 DVDRQLKEQTLKIEKLKDRIPRCQ-------AKIDSRHSILESLRDCFMKKKAEIAVMV----EKTSEVRRRKDELQQSI 325 (885)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 325 (885)
.+...+..++++++.....+.+++ ..+..+..++..+..........+.... .....+..++..++..+
T Consensus 409 ~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel 488 (1293)
T KOG0996|consen 409 RLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL 488 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 444444444444444444444444 4444444444444444333333333222 22223344555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002747 326 SLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSA 405 (885)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (885)
..+..++...+.++.-.++++..+..........+.++...+ ........+....+..+...+.....++.+....+..
T Consensus 489 ~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L-~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~ 567 (1293)
T KOG0996|consen 489 MPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKL-LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPK 567 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHH
Confidence 666666666666666666666666666666666666665555 2323333444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 406 LSEKLSKEKNEIRRISDEIEDYDKKCR 432 (885)
Q Consensus 406 l~~~~~~~~~~~~~l~~~~~~~~~~~~ 432 (885)
+......+...+..++.++..++....
T Consensus 568 ~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 568 LRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555544443
No 32
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.78 E-value=5e-11 Score=122.32 Aligned_cols=49 Identities=29% Similarity=0.446 Sum_probs=45.4
Q ss_pred CCceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHh
Q 002747 18 GAGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l 66 (885)
..+++.+|.++||.+|-..+++++.-+|.+.|.||+||||.|.++..+|
T Consensus 3 eRGKfrSLTliNWNGFFARTFDlDeLVTTLSGGNGAGKSTTMA~FvTAL 51 (1480)
T COG3096 3 ERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTAL 51 (1480)
T ss_pred cccccceeeEeeccchhhhhccHHHHHHhccCCCCCcccchHHHHHHHH
Confidence 4578999999999999999999998899999999999999999998877
No 33
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.77 E-value=8.1e-18 Score=165.14 Aligned_cols=148 Identities=27% Similarity=0.411 Sum_probs=112.6
Q ss_pred ceeeEEEEEecccccceeE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcC----CceeEEE
Q 002747 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTG----CSYAMVE 93 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~----~~~~~v~ 93 (885)
|+|++|.+.||++|...++ +|+||+|+|+||||||||||++||.|+|+.......|.....++++.+ ...+.|.
T Consensus 1 m~i~~~~~~~f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~ 80 (251)
T cd03273 1 MHIKEIILDGFKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVT 80 (251)
T ss_pred CEeeEEEEeCccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEE
Confidence 7999999999999988886 999999999999999999999999999997654445665555677543 3467999
Q ss_pred EEEEeCCCCCCCcc-cCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhh
Q 002747 94 VELKNRGEDAFKPE-IFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLH 171 (885)
Q Consensus 94 l~~~~~~~~~~~~~-~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 171 (885)
+.|.+.+...+.+. ...+.++|.|.+. .+...|++ +|+.. ....+..++..+|+..+++++++.|+++..++.
T Consensus 81 ~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~i---n~~~~--~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~ 155 (251)
T cd03273 81 IVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLI---NGHRA--QQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN 155 (251)
T ss_pred EEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEE---CCEEe--eHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH
Confidence 99988543211110 1235789999887 44444545 34333 346888999999998888889999999988876
Q ss_pred c
Q 002747 172 S 172 (885)
Q Consensus 172 ~ 172 (885)
.
T Consensus 156 ~ 156 (251)
T cd03273 156 M 156 (251)
T ss_pred h
Confidence 5
No 34
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.5e-11 Score=127.63 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=31.8
Q ss_pred cccccEEecCCCChHHHHHHHHccccCeEEecChhhHHHHHHHHHHhCCCCccE
Q 002747 478 PIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQI 531 (885)
Q Consensus 478 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 531 (885)
|+...+.+ + +.|.+|+..+||.+ ++|.+...+ ..+++.+.++++++
T Consensus 599 Pli~kl~y-~-p~fdka~k~Vfgkt---ivcrdl~qa---~~~ak~~~ln~ITl 644 (1200)
T KOG0964|consen 599 PLISKLRY-E-PQFDKALKHVFGKT---IVCRDLEQA---LRLAKKHELNCITL 644 (1200)
T ss_pred chHHHhCc-c-hhhHHHHHHHhCce---EEeccHHHH---HHHHHhcCCCeEEe
Confidence 44444554 4 68899999999986 999998776 45566655555443
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.76 E-value=1.6e-11 Score=152.41 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCCCCCcccccccEEecCCCChHHHHHHHHccccCeEEecChhhHHHHHHH
Q 002747 461 LRAIERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGC 520 (885)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (885)
+..+..++..+ .+++|.+.+++.+ + +.|..++...+|+.+..++|.+...+..+...
T Consensus 508 v~~~i~v~~~~-~~~~g~~~~li~~-~-~~~~~a~~~~~g~~~~~ivv~~~~~a~~~~~~ 564 (1179)
T TIGR02168 508 VKALLKNQSGL-SGILGVLSELISV-D-EGYEAAIEAALGGRLQAVVVENLNAAKKAIAF 564 (1179)
T ss_pred HHHHHhccccc-CCCccchhceeee-C-hhHHHHHHHHHHHHhcCeEECCHHHHHHHHHH
Confidence 33444443333 3357777888877 4 57888888888876555777776655443333
No 36
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.75 E-value=2.1e-17 Score=159.62 Aligned_cols=127 Identities=35% Similarity=0.489 Sum_probs=98.2
Q ss_pred eeeEEEEEecccc--cceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhc-----CCceeEEE
Q 002747 21 TITRVRLENFMCH--SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKT-----GCSYAMVE 93 (885)
Q Consensus 21 ~i~~i~l~nf~~~--~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~-----~~~~~~v~ 93 (885)
+|++|+|.||++| ...+++|+|++|+|+||||+|||||+|||.|||++.+.+..|.....++|+. ....+.|+
T Consensus 1 ~I~~l~i~nFr~~~~~~~~~~~~~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~ 80 (220)
T PF02463_consen 1 MIKSLEIENFRNFKGKNAELSFSPGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVE 80 (220)
T ss_dssp EEEEEEEESBTTC-SCEEEEETTSSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEE
T ss_pred CccEEEEcCceEEecCeEEEecCCCCEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Confidence 6899999999999 6888999999999999999999999999999999988777888888888876 45678999
Q ss_pred EEEEeCCCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCC
Q 002747 94 VELKNRGEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVE 155 (885)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 155 (885)
+.|.+.+.. .......+.|.|.+. .+.+.|++ ++..+ +..++..++...++...
T Consensus 81 ~~~~~~~~~---~~~~~~~~~i~r~~~~~~~~~~~i---n~~~~--~~~~~~~~l~~~~i~~~ 135 (220)
T PF02463_consen 81 LIFDNSDEE---FELDKKEIEISRRIDRKGRSEYKI---NGKKV--RLKDLEELLPEVGISPE 135 (220)
T ss_dssp EEEECTTEE---SSSSSSEEEEEEEEETTS-EEEEE---TTEEE---HHHHHHHHHCTTTTTT
T ss_pred ccccccccc---cccccccccccccccccccccccc---ccccc--ccccccccccccccccc
Confidence 999876432 123346789999888 66678888 67666 44778888777766553
No 37
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.74 E-value=6.1e-17 Score=158.10 Aligned_cols=139 Identities=27% Similarity=0.344 Sum_probs=110.3
Q ss_pred eeEEEEEeccccc-ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCc------eeEEEE
Q 002747 22 ITRVRLENFMCHS-SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (885)
Q Consensus 22 i~~i~l~nf~~~~-~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~------~~~v~l 94 (885)
|++|.+.||++|. ..+|+|.+++++|+||||||||||++||+|+|++.+.. .|.....++++.+.. .+.|.+
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~~~~~-~r~~~~~~~i~~~~~~~~~~~~~~v~~ 79 (247)
T cd03275 1 LKRLELENFKSYKGRHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGEKSSH-LRSKNLKDLIYRARVGKPDSNSAYVTA 79 (247)
T ss_pred CcEEEEECccccCCCeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCCCccc-ccccchhhhcccCccccCCCceEEEEE
Confidence 6799999999996 45799999999999999999999999999999876433 466666677877654 688999
Q ss_pred EEEeCCCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhhcCC
Q 002747 95 ELKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHSGN 174 (885)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 174 (885)
.|.+.+ +....+.|.+..+...|.+ +|+.+ ...++..++..+|++++.+++++.|+.+..+....+
T Consensus 80 ~f~~~~---------~~~~~~~~~~~~~~~~~~i---ngk~~--s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p 145 (247)
T cd03275 80 VYEDDD---------GEEKTFRRIITGGSSSYRI---NGKVV--SLKEYNEELEKINILVKARNFLVFQGDVESIASKNP 145 (247)
T ss_pred EEEcCC---------CcEEEEEEEEECCceEEEE---CCEEe--cHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccC
Confidence 997652 2345666666666667777 56665 456888999999999988888899999999887655
Q ss_pred h
Q 002747 175 D 175 (885)
Q Consensus 175 ~ 175 (885)
+
T Consensus 146 ~ 146 (247)
T cd03275 146 P 146 (247)
T ss_pred c
Confidence 3
No 38
>PRK14079 recF recombination protein F; Provisional
Probab=99.73 E-value=6e-16 Score=157.74 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=86.7
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|++.||++|...+++|+||+|+|+||||+|||||++||.|++|++ .|.....++|+.|...+.|.+.|..+
T Consensus 1 M~i~~l~l~nfRn~~~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs----~r~~~~~~lI~~g~~~~~v~~~~~~~ 76 (349)
T PRK14079 1 MRLLSLRQLNYRNLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGE----LPNGRLADLVRFGEGEAWVHAEVETG 76 (349)
T ss_pred CEEEEEEEeccCCcccceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCC----CCCCcHHhheecCCCcEEEEEEEEeC
Confidence 89999999999999999999999999999999999999999999999983 25556678999999889999999765
Q ss_pred CCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCccccccHHHHHHHH
Q 002747 100 GEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELI 147 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (885)
+ ..+.+...+..+++.+++ ||+++ +..++..++
T Consensus 77 ~----------~~~~~~~~~~~~~~~~~i---ng~~~--~~~~l~~~~ 109 (349)
T PRK14079 77 G----------GLSRLEVGLGPGRRELKL---DGVRV--SLRELARLP 109 (349)
T ss_pred C----------CeEEEEEEEEcCceEEEE---CCeec--CHHHHHhhh
Confidence 3 233455555544566778 68777 334555543
No 39
>PRK00064 recF recombination protein F; Reviewed
Probab=99.72 E-value=2.7e-16 Score=161.38 Aligned_cols=136 Identities=25% Similarity=0.373 Sum_probs=100.9
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.|.||++|.+.+++|+||+|+|+||||||||||++||.+++++++. |.....++|+.|...+.|.+.|.++
T Consensus 1 M~i~~l~i~nfr~~~~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~---r~~~~~~li~~g~~~~~v~~~~~~~ 77 (361)
T PRK00064 1 MYLTRLSLTDFRNYEELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSH---RTARDKELIRFGAEAAVIHGRVEKG 77 (361)
T ss_pred CEEEEEEEeCCCcccceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCc---cCCChhHHHhcCCCcEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999999887653 5666788999999999999999754
Q ss_pred CCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCC-eeeechhhHhHhhhc
Q 002747 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENP-CVIMSQDKSREFLHS 172 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~~~~ 172 (885)
+ ..+.|.+.+. .+++.+++ ||+++. +..++..++....+.+.+. .+..+|...+.|+..
T Consensus 78 ~----------~~~~i~~~~~~~~~~~~~i---ng~~~~-~~~~l~~~~~~v~~~p~~~~l~~~~p~~RR~fLD~ 138 (361)
T PRK00064 78 G----------RELPLGLEIDKKGGRKVRI---NGEPQR-KLAELAGLLNVVLFTPEDLRLVKGGPSERRRFLDR 138 (361)
T ss_pred C----------cEEEEEEEEEcCCceEEEE---CCcccc-CHHHHhhhccEEEEccchhhhhcCCHHHHHHHHHH
Confidence 2 4568888876 45577888 677774 2344555443332332222 223344555555543
No 40
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=8.9e-17 Score=158.89 Aligned_cols=100 Identities=24% Similarity=0.413 Sum_probs=85.3
Q ss_pred eeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCCC
Q 002747 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (885)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~~ 101 (885)
|.+|.|.||++|.+.+|+|++|+|+|+||||||||||++||.|++|+++. |.....++++.|...+.|++.|.+.+
T Consensus 1 l~~l~i~nfr~~~~~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~~~~---r~~~~~~~i~~~~~~~~v~~~f~~~~- 76 (270)
T cd03242 1 LKSLELRNFRNYAELELEFEPGVTVLVGENAQGKTNLLEAISLLATGKSH---RTSRDKELIRWGAEEAKISAVLERQG- 76 (270)
T ss_pred CcEEEEeCCcCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHhccCCCC---CCCCHHHHHhcCCCCEEEEEEEEeCC-
Confidence 57899999999999999999999999999999999999999999998653 55556789999999999999998753
Q ss_pred CCCCcccCCCeEEEEEEee-CCcceEEEEcCCCcccc
Q 002747 102 DAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVA 137 (885)
Q Consensus 102 ~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~ 137 (885)
..+.+.|.+. .+++.+++ ||..++
T Consensus 77 ---------~~~~i~~~~~~~~~~~~~i---ng~~~~ 101 (270)
T cd03242 77 ---------GELALELTIRSGGGRKARL---NGIKVR 101 (270)
T ss_pred ---------CeEEEEEEEEcCCceEEEE---CCeecc
Confidence 3478888886 56777888 676664
No 41
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.70 E-value=3e-17 Score=114.76 Aligned_cols=49 Identities=35% Similarity=0.489 Sum_probs=45.7
Q ss_pred eeEEEEEecccccceeEEeCC-c-eEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 22 ITRVRLENFMCHSSLQIELGE-W-VNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~-~-~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
+.+|.+.||+.|...+|+|++ | +++|+||||||||||||||.|+|++..
T Consensus 1 L~rl~L~Nw~~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 1 LTRLQLVNWGSFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CcEEEEeccCccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 578999999999889999986 4 999999999999999999999999877
No 42
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.5e-16 Score=157.94 Aligned_cols=113 Identities=30% Similarity=0.443 Sum_probs=91.9
Q ss_pred eeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCCC
Q 002747 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGE 101 (885)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~~ 101 (885)
|.+|.|.||++|...+|+|+||+|+|+||||||||||++||+|++|+.+. .++++.|...+.|.+.|.+.+.
T Consensus 1 l~~l~i~nf~~~~~~~i~~~~~~~~i~G~nGsGKS~il~ai~~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~ 72 (276)
T cd03241 1 LLELSIKNFALIEELELDFEEGLTVLTGETGAGKSILLDALSLLLGGRAS--------ADLIRSGAEKAVVEGVFDISDE 72 (276)
T ss_pred CcEEEEeCccceeeeEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCCCh--------HHHhhCCCCeEEEEEEEecCCc
Confidence 57899999999999999999999999999999999999999999998743 5788888888899999987543
Q ss_pred CC------CCcccCCCeEEEEEEee-CCcceEEEEcCCCccccccHHHHHHHH
Q 002747 102 DA------FKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRVASRKQELLELI 147 (885)
Q Consensus 102 ~~------~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ 147 (885)
.. +....++++++|+|.+. ++++.|++ ||+.++ .+.+..+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~R~i~~~~~s~~~I---ng~~vs--l~~l~~i~ 120 (276)
T cd03241 73 EEAKALLLELGIEDDDDLIIRREISRKGRSRYFI---NGQSVT--LKLLRELG 120 (276)
T ss_pred hHHHHHHHHcCCCCCCeEEEEEEEecCCceEEEE---CCEEEC--HHHHHHHH
Confidence 21 01112356899999997 78899999 687773 45666664
No 43
>PF13514 AAA_27: AAA domain
Probab=99.67 E-value=2.4e-10 Score=136.51 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=68.2
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCCCCCCCcccCCCeEEEEEEeeCCcceE
Q 002747 47 ITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRGEDAFKPEIFGDSIIIERRITESTSTT 126 (885)
Q Consensus 47 I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~ 126 (885)
|||||.|||||++.||..+|||.|... . .+++++.. ...+-..+.+. .|..|.|.|..+.++
T Consensus 1 IyGpNEAGKST~l~fI~~lLFGfp~r~---~--~~f~~p~~-~~r~Gg~L~~~---------~g~~~~i~R~k~~~~--- 62 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLFGFPTRS---P--YNFYHPKN-GLRYGGRLEDP---------DGGELEIERRKGRKG--- 62 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCC---C--cccCCCCC-CCCceeEEEec---------CCceEEEeecCCCCC---
Confidence 799999999999999999999988742 1 11333211 11122222221 246789999765333
Q ss_pred EEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHh
Q 002747 127 VLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREF 169 (885)
Q Consensus 127 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 169 (885)
.+.+++|.+++ ...+..++..++-..+...|.|+.+.++.+
T Consensus 63 tl~~~~g~~~~--e~~L~~~Lgg~dr~~f~~iF~~d~~~L~~g 103 (1111)
T PF13514_consen 63 TLLDPDGQPLP--EDWLAALLGGLDRETFEAIFSFDHEELREG 103 (1111)
T ss_pred ceECCCCCCCC--HHHHHHHHcCCCHHHHHHHHcCCHHHHHHH
Confidence 56777898774 466778877666666666788887777665
No 44
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.65 E-value=7.3e-16 Score=145.21 Aligned_cols=81 Identities=38% Similarity=0.702 Sum_probs=73.6
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
+.|.+|+|.||++|+..+|+|+||+|+|+|+||+|||||++||+++||+.+....|.....++++.|...+.|++.|.+.
T Consensus 1 ~~i~~i~i~nfr~~~~~~i~~~~g~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~ 80 (213)
T cd03277 1 GSIVRIKLENFVTYDETEFRPGPSLNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGN 80 (213)
T ss_pred CeeEEEEEeCCCCcceeEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeC
Confidence 46899999999999989999999999999999999999999999999998876667777889999999999999999875
Q ss_pred C
Q 002747 100 G 100 (885)
Q Consensus 100 ~ 100 (885)
+
T Consensus 81 ~ 81 (213)
T cd03277 81 P 81 (213)
T ss_pred C
Confidence 3
No 45
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.1e-10 Score=126.03 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002747 259 DRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKT 311 (885)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (885)
.........++...+..+...+.........++.++.++..+......++.++
T Consensus 295 ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei 347 (1141)
T KOG0018|consen 295 KENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEI 347 (1141)
T ss_pred chhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444433
No 46
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=1.2e-13 Score=141.15 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=70.7
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|+|.+|.|.||++|...+++|+||+|+|+||||+|||||++||.+++++.+. |.....++|+.|...+.|...|..+
T Consensus 1 M~l~~L~i~nFR~~~~~~l~~~~~~nvi~G~NGsGKT~lLeAi~~l~~~~s~---R~~~~~~li~~g~~~~~v~~~~~~~ 77 (365)
T TIGR00611 1 MYLSRLELTDFRNYDAVDLELSPGVNVIVGPNGQGKTNLLEAIYYLALGRSH---RTSRDKPLIRFGAEAFVIEGRVSKG 77 (365)
T ss_pred CEEEEEEEeCCcceeeeEEEECCCeEEEECCCCCCHHHHHHHHHHHcccCCc---cccchhhHHhCCCCeEEEEEEEEeC
Confidence 8999999999999999999999999999999999999999999998887653 5666788999999999999999865
Q ss_pred C
Q 002747 100 G 100 (885)
Q Consensus 100 ~ 100 (885)
+
T Consensus 78 ~ 78 (365)
T TIGR00611 78 D 78 (365)
T ss_pred C
Confidence 3
No 47
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.61 E-value=1.2e-15 Score=139.01 Aligned_cols=78 Identities=33% Similarity=0.501 Sum_probs=68.6
Q ss_pred eeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccc---hhhhhcCCceeEEEEEEE
Q 002747 22 ITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATL---KDFIKTGCSYAMVEVELK 97 (885)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~---~~~i~~~~~~~~v~l~~~ 97 (885)
|++|++.||++|...++.|.++ +|+|+||||||||||+|||+|++|+++....+...+ .++++.|...++|+++|.
T Consensus 1 i~~i~l~nf~~~~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 80 (178)
T cd03239 1 IKQITLKNFKSYRDETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFD 80 (178)
T ss_pred CcEEEEECccCCCCCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEE
Confidence 5789999999999888888766 999999999999999999999999988876665544 677889999999999997
Q ss_pred eC
Q 002747 98 NR 99 (885)
Q Consensus 98 ~~ 99 (885)
+.
T Consensus 81 ~~ 82 (178)
T cd03239 81 KS 82 (178)
T ss_pred Cc
Confidence 64
No 48
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=8.3e-15 Score=144.03 Aligned_cols=142 Identities=22% Similarity=0.332 Sum_probs=102.4
Q ss_pred eeEEEEEecccccceeE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCc----eeEEEEE
Q 002747 22 ITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS----YAMVEVE 95 (885)
Q Consensus 22 i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~----~~~v~l~ 95 (885)
|++|+|.||++|++..+ +|++++|+|+||||||||||++||.|+|+...+. .|.....++++.|.. .+.|.+.
T Consensus 1 i~~i~~~nfksy~~~~~~~~~~~~~~~i~GpNGsGKStll~ai~~~l~~~~~~-~~~~~~~~li~~~~~~~~~~~~v~i~ 79 (243)
T cd03272 1 IKQVIIQGFKSYKDQTVIEPFSPKHNVVVGRNGSGKSNFFAAIRFVLSDEYTH-LREEQRQALLHEGSGPSVMSAYVEII 79 (243)
T ss_pred CcEEEEeCccCcccCcccccCCCCcEEEECCCCCCHHHHHHHHHHHHcCchhh-hhhhhHHHhEeCCCCCCCceEEEEEE
Confidence 67999999999987777 8999999999999999999999999999876655 455445577766653 4678888
Q ss_pred EEeCCCCCCCcccCCCeEEEEEEeeCCcceEEEEcCCCccccccHHHHHHHHHHcCCCCCCCeeeechhhHhHhhhc
Q 002747 96 LKNRGEDAFKPEIFGDSIIIERRITESTSTTVLKDHQGKRVASRKQELLELIDHFNIDVENPCVIMSQDKSREFLHS 172 (885)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 172 (885)
|.+.+.. . ......+.+.|.+......+.+ ++... +..++..++..+|+...++++.+.++.+..++..
T Consensus 80 ~~~~~~~--~-~~~~~~~~i~r~ig~~~~~~~l---~~~~~--t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l 148 (243)
T cd03272 80 FDNSDNR--F-PIDKEEVRLRRTIGLKKDEYFL---DKKNV--TKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNM 148 (243)
T ss_pred EEcCCCc--c-CCCCCEEEEEEEEECCCCEEEE---CCeEc--CHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhc
Confidence 8654221 1 1223568888888754556666 34333 3467788888888877666666677766555443
No 49
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.3e-13 Score=135.20 Aligned_cols=101 Identities=24% Similarity=0.404 Sum_probs=83.3
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|.|.+|.+.||++|.+.+++|+||+|+++|+||+|||+|++||.++-.|++. |.....++|+.+++.+.|...+...
T Consensus 1 M~l~~L~L~nFRNy~~~~l~~~p~~nvl~G~NgqGKTNlLEAI~~l~~grS~---Rt~~~~~lir~~~~~~~i~~~v~~~ 77 (363)
T COG1195 1 MYLLSLLLRNFRNYAELDLDLSPGVNVLVGENGQGKTNLLEAIYLLALGRSH---RTSRDKELIRTGADEAEISARVQRK 77 (363)
T ss_pred CceeeeehhhcCCcccceeccCCCcEEEECCCCCchHHHHHHHHHHccccCc---cccchhHHHhcCCccEEEEEEEeec
Confidence 8999999999999999999999999999999999999999999998888775 6667789999999999999999876
Q ss_pred CCCCCCcccCCCeEEEEEEee-CCcceEEEEcCCCccc
Q 002747 100 GEDAFKPEIFGDSIIIERRIT-ESTSTTVLKDHQGKRV 136 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~-~~~~~~~~~~~~g~~~ 136 (885)
+ ....+.-.+. .|+....+ ||...
T Consensus 78 ~----------~~~~~~~~~~~~g~~~vri---ng~~~ 102 (363)
T COG1195 78 G----------REGTLGLQISKKGRRRVRI---NGTKA 102 (363)
T ss_pred c----------ceeeeEEEeccCcceEEEE---CCccc
Confidence 3 2334444444 55555777 45444
No 50
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.57 E-value=5.7e-15 Score=137.73 Aligned_cols=79 Identities=59% Similarity=0.896 Sum_probs=72.4
Q ss_pred eeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEEEeCC
Q 002747 22 ITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVELKNRG 100 (885)
Q Consensus 22 i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~~~~~ 100 (885)
|.+|++.||++|.+.+|+|++|+|+|+||||+|||||++||.+++++......|+..+.++++.|...+.|.+.|.+.+
T Consensus 1 i~~l~l~nfr~~~~~~l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~ 79 (198)
T cd03276 1 IESITLKNFMCHRHLQIEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG 79 (198)
T ss_pred CeEEEEeCccceeeeEEecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999987766677778899999988899999999865
No 51
>PRK02224 chromosome segregation protein; Provisional
Probab=99.53 E-value=7.2e-08 Score=114.26 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=10.2
Q ss_pred echhhHhHhhhcCChhhHHH
Q 002747 161 MSQDKSREFLHSGNDKDKFK 180 (885)
Q Consensus 161 ~~q~~~~~~~~~~~~~~~~~ 180 (885)
..|.....++....++..|.
T Consensus 146 ~~p~~R~~ii~~l~~l~~~e 165 (880)
T PRK02224 146 ATPSDRQDMIDDLLQLGKLE 165 (880)
T ss_pred CCHHHHHHHHHHHhCCHHHH
Confidence 35666665555544444443
No 52
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.9e-07 Score=99.30 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002747 185 ATLLQQVNDLLQSIYNHLNKGDALVLELEATIK-PTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLK 263 (885)
Q Consensus 185 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (885)
+++...+....+....-+...+..+.+...-+. .+...+..|+.+...+-+++.....+..+.......++........
T Consensus 168 AAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~ 247 (1174)
T KOG0933|consen 168 AAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRK 247 (1174)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666665544 3566777888888888888888888888887776666555555555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 264 EQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMK 299 (885)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (885)
.....+......+..+.+.+.....++..++.++.+
T Consensus 248 ~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ike 283 (1174)
T KOG0933|consen 248 NSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKE 283 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555555555555444444444444444444444433
No 53
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.48 E-value=1.1e-13 Score=133.00 Aligned_cols=49 Identities=37% Similarity=0.617 Sum_probs=43.9
Q ss_pred EEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCC
Q 002747 24 RVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKG 72 (885)
Q Consensus 24 ~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~ 72 (885)
+|+|.||++|.+.+|+|+||+|+|+||||+|||||++||.||||+.++.
T Consensus 1 ~i~i~nf~~~~~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~~ 49 (202)
T PF13476_consen 1 KIHIKNFRSFKDLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSSR 49 (202)
T ss_dssp EEEEEEETTEEEEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-TT
T ss_pred CEEEEEeCCCcceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 6899999999999999999999999999999999999999999998764
No 54
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.48 E-value=1.1e-13 Score=131.97 Aligned_cols=90 Identities=24% Similarity=0.307 Sum_probs=72.6
Q ss_pred ceeeEEEEEecccc-cceeEEeCCc----eEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEE
Q 002747 20 GTITRVRLENFMCH-SSLQIELGEW----VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEV 94 (885)
Q Consensus 20 m~i~~i~l~nf~~~-~~~~i~f~~~----~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l 94 (885)
|+|.+|++.||++| +...|+|.++ +++|+||||||||||+++|.|+|+|.+....+.....+.+..+...+.|.+
T Consensus 1 m~~~~i~l~nf~~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 1 MKPLKLELKNFGPFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred CEEEEEEEECCcCcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 89999999999998 6678999765 999999999999999999999998877654443334566677777889999
Q ss_pred EEEeCCCCCCCcccCCCeEEEEEEe
Q 002747 95 ELKNRGEDAFKPEIFGDSIIIERRI 119 (885)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~i~R~~ 119 (885)
.|.+.+ ..+.+.|.+
T Consensus 81 ~f~~~~----------~~~~~~r~~ 95 (213)
T cd03279 81 TFQLGG----------KKYRVERSR 95 (213)
T ss_pred EEEECC----------eEEEEEEec
Confidence 998763 456777744
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.47 E-value=5.7e-07 Score=107.39 Aligned_cols=230 Identities=20% Similarity=0.256 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchH
Q 002747 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVD 717 (885)
Q Consensus 638 ~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 717 (885)
+..+..++.++.........+..+...++.++..++.++..+...+..+.+....++.++..+...+.. +.....
T Consensus 1638 q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~-----~~~~~s 1712 (1930)
T KOG0161|consen 1638 QAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNE-----LNAQNS 1712 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----Hhhccc
Confidence 334444444444444444455555555555555555555555555555555555555555555555444 322223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002747 718 EISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYE 797 (885)
Q Consensus 718 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (885)
.+-..-..++.++..++.++.+...+...+..+..........+..++...+.....+......++.....+..++.++.
T Consensus 1713 ~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1713 SLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555555555555555555555555555555555555555555555555555556666666666666665
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-----cc---eecccCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 002747 798 DVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICP-----ES---EIEALGGWDGSTPEQLSAQVNRLNQRLKHESHQ 869 (885)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 869 (885)
...-......+..++.++..++.+++.-...-..... ++ ++......+......+...+++++.++..++++
T Consensus 1793 ~~a~~~~k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQ 1872 (1930)
T KOG0161|consen 1793 QAALKGGKKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQ 1872 (1930)
T ss_pred HhhhhccHHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5444344556777777777777766654432111110 00 122234445666678888888888888888888
Q ss_pred ccC
Q 002747 870 YEH 872 (885)
Q Consensus 870 ~~~ 872 (885)
+..
T Consensus 1873 lee 1875 (1930)
T KOG0161|consen 1873 LEE 1875 (1930)
T ss_pred HHH
Confidence 765
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.46 E-value=1.2e-06 Score=104.65 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002747 851 QLSAQVNRLNQRLKHESH 868 (885)
Q Consensus 851 ~~~~~i~~~~~~~~~~~~ 868 (885)
.....+..+...+.....
T Consensus 1467 ~~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1467 QLSTELQKLKNALEELLE 1484 (1930)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 57
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.45 E-value=4.6e-13 Score=125.87 Aligned_cols=90 Identities=27% Similarity=0.395 Sum_probs=72.3
Q ss_pred eeEEEEEecccc-cceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccc-cccchhhhhcCCceeEEEEEEEeC
Q 002747 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR-AATLKDFIKTGCSYAMVEVELKNR 99 (885)
Q Consensus 22 i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r-~~~~~~~i~~~~~~~~v~l~~~~~ 99 (885)
|++|.+.||++| ...+++|.+|+++|+||||||||||++||.|+++|....... .......+..+...+.|.+.|.+.
T Consensus 1 ~~~l~l~nfr~~~~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 1 IDKLSIRNIRSFHERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred CcEEEEECcccccCceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 578999999995 777899999999999999999999999999999887764222 112456677788888999999875
Q ss_pred CCCCCCcccCCCeEEEEEEee
Q 002747 100 GEDAFKPEIFGDSIIIERRIT 120 (885)
Q Consensus 100 ~~~~~~~~~~~~~~~i~R~~~ 120 (885)
. +..|.+.|.+.
T Consensus 81 ~---------~~~~~v~r~~~ 92 (204)
T cd03240 81 N---------GKKYTITRSLA 92 (204)
T ss_pred C---------CCEEEEEEEhh
Confidence 1 35688888664
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.37 E-value=4.3e-06 Score=100.05 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=32.7
Q ss_pred ccccEEecCCCChHHHHHHHHccccCeEEecChhhHHHHHHHHH
Q 002747 479 IGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAR 522 (885)
Q Consensus 479 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 522 (885)
+.+++..+. ..+.+++..++|+...+++|++...+.....+|.
T Consensus 687 vsel~~~v~-~~~~~~~~A~lg~~~~~iVv~d~~~A~~ai~~L~ 729 (1486)
T PRK04863 687 LSEIYDDVS-LEDAPYFSALYGPARHAIVVPDLSDAAEQLAGLE 729 (1486)
T ss_pred hhHhhhccC-cchHHHHHHHHHhhhCeEEeCCHHHHHHHHHhcc
Confidence 345555234 5788899999999999999999988877666664
No 59
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=1.7e-07 Score=101.52 Aligned_cols=178 Identities=13% Similarity=0.156 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002747 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQ 265 (885)
Q Consensus 186 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (885)
..+..+......+...+......+..+...+..+...++.+.+.......+.-+.....++........+.........+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~ 260 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRA 260 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHH
Confidence 34556667777888888888888888888999999999999988888888888888888888777777777888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 266 TLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSY 345 (885)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (885)
...++.+...+.......++++.+..+....+......+......+...-..+....+.+......+..+...-...+..
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~ 340 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKR 340 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777777777777777777777777777777777777777777777777666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002747 346 MQKMVNRVKGLEQQVHDI 363 (885)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l 363 (885)
+......+..++..+...
T Consensus 341 i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 341 IEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 666666666666666543
No 60
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.28 E-value=8.1e-12 Score=116.55 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=59.8
Q ss_pred eeEEEEEecccc-cceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCc------eeEEEE
Q 002747 22 ITRVRLENFMCH-SSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCS------YAMVEV 94 (885)
Q Consensus 22 i~~i~l~nf~~~-~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~------~~~v~l 94 (885)
|++|.+.||++| .+..++|.+|+++|+|||||||||+++||.|+++.......|+....+++..|.. ...|.+
T Consensus 1 ~~~~~~~~fr~~~~~~~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (197)
T cd03278 1 LKKLELKGFKSFADKTTIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL 80 (197)
T ss_pred CcEEEEeCCcCcCCCeeeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEE
Confidence 578999999999 7889999999999999999999999999999986543332344444555544432 356777
Q ss_pred EEEeC
Q 002747 95 ELKNR 99 (885)
Q Consensus 95 ~~~~~ 99 (885)
.|.+.
T Consensus 81 vfq~~ 85 (197)
T cd03278 81 TFDNS 85 (197)
T ss_pred EEEcC
Confidence 77754
No 61
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.21 E-value=2.7e-11 Score=114.43 Aligned_cols=78 Identities=33% Similarity=0.497 Sum_probs=58.5
Q ss_pred ceeeEEEEEecccccceeE--EeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCC-----ceeEE
Q 002747 20 GTITRVRLENFMCHSSLQI--ELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGC-----SYAMV 92 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i--~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~-----~~~~v 92 (885)
|.|++|++.||++|+...+ +++..++.|+|||||||||++++|.|++|..... .|...+..++..+. +.+.+
T Consensus 1 ~~~~~l~l~nfk~~~~~~~l~~~~~~i~~ivGpNGaGKSTll~~i~~~~G~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 1 LIITKLVLENFKSYAGEQVIGPFHKSFSAIVGPNGSGKSNVIDSMLFVFGFRASK-MRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred CeEEEEEEECcccCCCCeeeccCCCCeEEEECCCCCCHHHHHHHHHHHhccCHHH-hhhhhHHHHhcCCCCCCCCceEEE
Confidence 7899999999999976665 6777899999999999999999999998865432 33333444444332 34567
Q ss_pred EEEEEe
Q 002747 93 EVELKN 98 (885)
Q Consensus 93 ~l~~~~ 98 (885)
...|..
T Consensus 80 ~~~~~~ 85 (212)
T cd03274 80 EVHFQE 85 (212)
T ss_pred EEEEEe
Confidence 777764
No 62
>PF11398 DUF2813: Protein of unknown function (DUF2813); InterPro: IPR022602 This entry contains YbjD from Escherichia coli (strain K12), which is a conserved protein with a nucleotide triphosphate binding domain.
Probab=99.01 E-value=1.9e-08 Score=101.11 Aligned_cols=51 Identities=25% Similarity=0.443 Sum_probs=47.9
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRAK 71 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~ 71 (885)
|+|.+|.|.||+++....|+|++ +|+++|+|++||||+++||+++|+....
T Consensus 1 M~l~~i~i~~FRgi~~~~~~l~~-~t~liG~N~~GKss~l~Al~~~l~~~~~ 51 (373)
T PF11398_consen 1 MKLERIEISNFRGIKRLSLPLDD-NTVLIGENNWGKSSLLDALSLLLSPSRR 51 (373)
T ss_pred CeEEEEEEeccCccceEEEEecC-ceEEEcCCCccHhHHHHHHHHHhCCCcc
Confidence 89999999999999999999985 8999999999999999999999997643
No 63
>COG5293 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=7.9e-06 Score=80.27 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=38.2
Q ss_pred CceeeEEEEEecccccceeEEeCCceEEEEc-----------CCCCchHHHHHHHHHHhcCCCC
Q 002747 19 AGTITRVRLENFMCHSSLQIELGEWVNFITG-----------QNGSGKSAILTALCIAFGCRAK 71 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G-----------~NgsGKSti~dai~~~l~~~~~ 71 (885)
||+...+.+.+--.|+ ++.|.||+|+|.| .||-||||++++|.||||+.-+
T Consensus 4 mi~~~~~~cN~q~vfk--~vkFnpGlNIVlae~red~~~~~~tnglGKSTlie~i~Fclg~ti~ 65 (591)
T COG5293 4 MIKLSKLYCNHQQVFK--PVKFNPGLNIVLAEIREDENRKKDTNGLGKSTLIELIDFCLGSTID 65 (591)
T ss_pred eeeehheeeccccccc--eeeeCCCceEEeeeccCcccccccccCcchhhHHHHHHHHhccccc
Confidence 3444344443333344 4568999999998 6999999999999999998776
No 64
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.99 E-value=2.2e-10 Score=108.12 Aligned_cols=52 Identities=35% Similarity=0.568 Sum_probs=48.2
Q ss_pred ceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAK 71 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~ 71 (885)
|+|.+|-+.||++|....|.|+++ .|+|+||||+||||++|||+-||.....
T Consensus 1 mrLrkiSl~nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~fid 53 (440)
T COG3950 1 MRLRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKFID 53 (440)
T ss_pred CccchhhhhhhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhhcc
Confidence 789999999999999999999998 9999999999999999999999865444
No 65
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.92 E-value=0.00046 Score=81.88 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcch
Q 002747 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAV 716 (885)
Q Consensus 637 ~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 716 (885)
++.........+..+...+..+...+..++..+..+..++......+..++........+...+...+.+. -...+
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~----d~~~~ 1309 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDS----DKNDY 1309 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CHHHH
Confidence 44445555555555666666666666666666666666666655555566666555665555555554330 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 717 DEISQEISNIQEEIQEKEIILEKLQFSMNEA 747 (885)
Q Consensus 717 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 747 (885)
..+...+..+..++...+..+.++...+..+
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~ 1340 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRL 1340 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554444444444444444333
No 66
>PRK03918 chromosome segregation protein; Provisional
Probab=98.90 E-value=0.00057 Score=81.71 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=11.4
Q ss_pred chhhHhHhhhcCChhhHHHHHH
Q 002747 162 SQDKSREFLHSGNDKDKFKFFF 183 (885)
Q Consensus 162 ~q~~~~~~~~~~~~~~~~~~~~ 183 (885)
.|.....++....+.+.|....
T Consensus 143 ~~~~r~~~~~~~~~~~~~~~~~ 164 (880)
T PRK03918 143 SDESREKVVRQILGLDDYENAY 164 (880)
T ss_pred CcHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555555554433
No 67
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.90 E-value=0.00068 Score=82.25 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=22.6
Q ss_pred CCceeeEEEEEecccc------ccee----EEeCCc--eEEEEcCCCCchHHHHHH
Q 002747 18 GAGTITRVRLENFMCH------SSLQ----IELGEW--VNFITGQNGSGKSAILTA 61 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~------~~~~----i~f~~~--~~~I~G~NgsGKSti~da 61 (885)
-.|.+..|.+.|.-.| |.+| |+|.=| -+=| +|-++||-+|.+.
T Consensus 7 ~~G~v~El~lDG~t~i~GTNG~GKTTlLRlip~FYGa~p~rl-v~k~~~rksF~~y 61 (1201)
T PF12128_consen 7 LPGVVAELKLDGHTHICGTNGVGKTTLLRLIPFFYGADPSRL-VPKTSGRKSFDDY 61 (1201)
T ss_pred CCCceEEEecCCceeeecCCCCcHHHHHHHHHHhcCCCcccc-CCccchhhhHHHH
Confidence 3477778887765555 1222 233111 1112 5677788777664
No 68
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.88 E-value=3.2e-10 Score=129.18 Aligned_cols=230 Identities=24% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchH
Q 002747 638 DEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSASAVD 717 (885)
Q Consensus 638 ~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 717 (885)
+..+.+++..+.......+.+......+...+..+..++..+...+..+.+....++.++..+...+.. +.....
T Consensus 580 q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~-----l~~~~~ 654 (859)
T PF01576_consen 580 QAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNE-----LTSQNS 654 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhh
Confidence 333333433443333333334444444444444445555555544555555555555555555555554 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002747 718 EISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYE 797 (885)
Q Consensus 718 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (885)
.+......+...+..+...+.+.......+..+..........+..++...+.....+......++..+..+...+..+.
T Consensus 655 ~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E 734 (859)
T PF01576_consen 655 SLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAE 734 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555555555555555555555555555555555556666666666666666666666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-----cceecc---cCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 002747 798 DVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICP-----ESEIEA---LGGWDGSTPEQLSAQVNRLNQRLKHESHQ 869 (885)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 869 (885)
..........+..++.++.+++.+++.-...-..... ...+.+ ..+........+...+.+++.+++.++++
T Consensus 735 ~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq 814 (859)
T PF01576_consen 735 QSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVDKLQLKLKQLKRQ 814 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5433233445666666666666665554432211110 000111 22233444456677777777888877777
Q ss_pred ccC
Q 002747 870 YEH 872 (885)
Q Consensus 870 ~~~ 872 (885)
+..
T Consensus 815 ~ee 817 (859)
T PF01576_consen 815 LEE 817 (859)
T ss_dssp ---
T ss_pred hhh
Confidence 766
No 69
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.84 E-value=3.9e-09 Score=95.55 Aligned_cols=68 Identities=40% Similarity=0.580 Sum_probs=50.1
Q ss_pred EEEEecccc-cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCCCccccccchhhhhcCCceeEEEEEE
Q 002747 25 VRLENFMCH-SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKGTQRAATLKDFIKTGCSYAMVEVEL 96 (885)
Q Consensus 25 i~l~nf~~~-~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~v~l~~ 96 (885)
|.+.||.+| .+..|.|.++ +++|+|||||||||++++|.|+++.......|. +.+..|...+.+++.|
T Consensus 2 i~~~~~~~~~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~ 71 (162)
T cd03227 2 IVLGRFPSYFVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR----SGVKAGCIVAAVSAEL 71 (162)
T ss_pred ceeCCCCEEEeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc----CcccCCCcceeeEEEE
Confidence 667888887 6778887655 999999999999999999999998877654452 2223444445555444
No 70
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.83 E-value=1.8e-05 Score=76.18 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002747 192 NDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR 231 (885)
Q Consensus 192 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (885)
...++.....+..+...+..........+.++..+...+.
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 71
>PF04310 MukB: MukB N-terminal; InterPro: IPR007406 This is the N-terminal region of MukB. MukB is involved in the segregation and condensation of prokaryotic chromosomes. MukE (IPR007385 from INTERPRO) along with MukF (IPR005582 from INTERPRO) interact with MukB in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side []. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif. In other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0007059 chromosome segregation, 0030261 chromosome condensation, 0009295 nucleoid; PDB: 1QHL_A 3EUK_H 3EUJ_A.
Probab=98.81 E-value=9.9e-09 Score=89.41 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=45.0
Q ss_pred CceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l 66 (885)
.+++.+|.+.||..|-..+++|+.-+|.+.|.|||||||+|.|+..+|
T Consensus 4 r~k~~SLtlVNwNG~fartfdLd~lvTtL~G~NGAGKsT~m~Af~taL 51 (227)
T PF04310_consen 4 RGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITAL 51 (227)
T ss_dssp B-EEEEEEEECETTECEEEEEHHCCCCCCCCSTTCCHHHHHHHHHHHH
T ss_pred ccccceEEEEeecCeeeeEeehhhheEeeecCCCCcchhhHHHHHHHh
Confidence 478999999999999999999999999999999999999999999988
No 72
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.77 E-value=0.00079 Score=74.96 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002747 850 EQLSAQVNRLNQRLKHESHQ 869 (885)
Q Consensus 850 ~~~~~~i~~~~~~~~~~~~~ 869 (885)
..+...+.............
T Consensus 551 ~~Le~ev~~~~ee~~kaq~E 570 (775)
T PF10174_consen 551 QQLEQEVTRYREESEKAQAE 570 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444454444444444433
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.76 E-value=3.2e-05 Score=74.45 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 410 LSKEKNEIRRISDEIEDYDKKCREIRSEI 438 (885)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (885)
+..+...+..+..++.........+...+
T Consensus 199 v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 199 VKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433
No 74
>PF13166 AAA_13: AAA domain
Probab=98.73 E-value=0.00034 Score=81.25 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=33.2
Q ss_pred eccccc--ceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 29 NFMCHS--SLQIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 29 nf~~~~--~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
||++|. +..+++.+++|+|||.|||||||+...|.-+-+++.
T Consensus 1 n~~~~~~~~~~~~~~~~~n~IYG~NGsGKStlsr~l~~~~~~~~ 44 (712)
T PF13166_consen 1 NYASFDNWDNELDEFKKINLIYGRNGSGKSTLSRILKSLCRGRG 44 (712)
T ss_pred CeeeecCCCccCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 677884 456666678999999999999999999986544433
No 75
>COG4637 Predicted ATPase [General function prediction only]
Probab=98.64 E-value=1.2e-08 Score=95.86 Aligned_cols=67 Identities=28% Similarity=0.451 Sum_probs=50.2
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHh---cCCCC-CccccccchhhhhcCC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAF---GCRAK-GTQRAATLKDFIKTGC 87 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l---~~~~~-~~~r~~~~~~~i~~~~ 87 (885)
|+|.+|.+.||++|....+++. ++|+|+|.||+||||+++++.++= -|+-. ...|.+.+++++..|.
T Consensus 1 ~~l~si~vknyRs~r~l~lei~-~~nviIGANGaGKSn~~~~l~~l~~a~~g~l~~~l~~~GG~~~~l~~Gk 71 (373)
T COG4637 1 MMLVSIKVKNYRSFRSLDLEIR-RVNVIIGANGAGKSNFYDALRLLADAVRGNLQQALQREGGLNEVLTRGK 71 (373)
T ss_pred CccchhhhhcchhHHhcccccc-ceEEEEcCCCCchhHHHHHHHHHHHHHhhhHHHHHHHhcCchhhhhcCh
Confidence 7899999999999999998776 799999999999999999997742 11111 1123344555665554
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.63 E-value=0.001 Score=69.62 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.8
Q ss_pred CCCcccCCCeEEE
Q 002747 103 AFKPEIFGDSIII 115 (885)
Q Consensus 103 ~~~~~~~~~~~~i 115 (885)
+|.|..++..|.+
T Consensus 80 yyLPk~~~e~Yqf 92 (546)
T PF07888_consen 80 YYLPKDDDEFYQF 92 (546)
T ss_pred ccCCCCCCCeEEE
Confidence 3444444444543
No 77
>PF13175 AAA_15: AAA ATPase domain
Probab=98.56 E-value=6.1e-08 Score=104.99 Aligned_cols=49 Identities=35% Similarity=0.561 Sum_probs=44.4
Q ss_pred eeEEEEEecccccce-eEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 22 ITRVRLENFMCHSSL-QIELGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 22 i~~i~l~nf~~~~~~-~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
|++|.|.||++|++. .|+|++++|+|+|.|||||||||+||...+.+..
T Consensus 1 ik~i~IkNfR~i~~~~~i~~~~~itiiiG~N~sGKT~IL~aL~~~~~~~~ 50 (415)
T PF13175_consen 1 IKKIRIKNFRSIKDSGEINFDEDITIIIGENNSGKTNILEALDLFFNGKF 50 (415)
T ss_pred CcEEEEecccccCccceeecCCceEEEEccCCCCHHHHHHHHHHhcCccc
Confidence 679999999999998 9999999999999999999999999966665544
No 78
>COG3593 Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]
Probab=98.53 E-value=8.6e-08 Score=101.01 Aligned_cols=50 Identities=34% Similarity=0.523 Sum_probs=48.6
Q ss_pred ceeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcCC
Q 002747 20 GTITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGCR 69 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~ 69 (885)
|.|.+|+|.||++|...++.|+.|+|||+|+|.+|||+++|||+.+|...
T Consensus 1 M~L~~v~I~nFR~i~~lsl~~~~g~~vlIGeN~~GKsslLdAL~l~l~~~ 50 (581)
T COG3593 1 MHLERVKIKNFRGINRLSLEFEEGLNVLIGENNSGKSSLLDALRLLLDPE 50 (581)
T ss_pred CcceeEEecccceeeeeeeeecCCceEEEcCCCcchHHHHHHHHHHcCCc
Confidence 89999999999999999999999999999999999999999999999885
No 79
>PRK01156 chromosome segregation protein; Provisional
Probab=98.52 E-value=0.0066 Score=72.45 Aligned_cols=20 Identities=5% Similarity=0.106 Sum_probs=12.9
Q ss_pred chhhHhHhhhcCChhhHHHH
Q 002747 162 SQDKSREFLHSGNDKDKFKF 181 (885)
Q Consensus 162 ~q~~~~~~~~~~~~~~~~~~ 181 (885)
.|.....++....+...|..
T Consensus 147 ~~~~r~~~ld~~~~~~~~~~ 166 (895)
T PRK01156 147 DPAQRKKILDEILEINSLER 166 (895)
T ss_pred CHHHHHHHHHHHhChHHHHH
Confidence 56677777766666666554
No 80
>COG1106 Predicted ATPases [General function prediction only]
Probab=98.50 E-value=9e-08 Score=95.45 Aligned_cols=47 Identities=38% Similarity=0.642 Sum_probs=41.7
Q ss_pred eeeEEEEEecccccceeEE-eCCceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 21 TITRVRLENFMCHSSLQIE-LGEWVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~-f~~~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
||++++|.||++|....+. |. ++|+|+|+||||||++++||.+..+.
T Consensus 1 MI~~~~IkNFkSf~e~~~~~~~-~in~I~G~N~sGKSNlleAl~f~~~~ 48 (371)
T COG1106 1 MIKSFKIKNFKSFRELELEDFG-KINIIYGANGAGKSNLLEALYFLKGL 48 (371)
T ss_pred CceEEEecccccHHHhhhcccc-ceEEEEcCCCCchhHHHHHHHHHHHh
Confidence 5899999999999888875 65 69999999999999999999887553
No 81
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=98.49 E-value=2.3e-08 Score=114.24 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 002747 212 LEATIKPTEKELSELQRKIR 231 (885)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~ 231 (885)
.......+..++..+...+.
T Consensus 65 aek~r~dL~~ELe~l~~~Le 84 (859)
T PF01576_consen 65 AEKQRRDLSEELEELKERLE 84 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 82
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.44 E-value=0.011 Score=70.95 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhccC
Q 002747 848 TPEQLSAQVNRLNQRLKHESHQYEH 872 (885)
Q Consensus 848 ~~~~~~~~i~~~~~~~~~~~~~~~~ 872 (885)
.+..+..++..++..++....+...
T Consensus 866 ~~~~le~k~~eL~k~l~~~~~~~~~ 890 (1822)
T KOG4674|consen 866 NIAKLEIKLSELEKRLKSAKTQLLN 890 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 3455566666666666665555443
No 83
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=2e-07 Score=80.60 Aligned_cols=38 Identities=42% Similarity=0.709 Sum_probs=33.4
Q ss_pred eEEeCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCcc
Q 002747 37 QIELGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQ 74 (885)
Q Consensus 37 ~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~ 74 (885)
.++|.+.+|+|+|.||+|||||++||...+|.++....
T Consensus 32 ~LeF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aGg~ 69 (233)
T COG3910 32 RLEFRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGG 69 (233)
T ss_pred hccccCceEEEEcCCCccHHHHHHHHHhhccccccCCC
Confidence 57899999999999999999999999998887776433
No 84
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.42 E-value=0.007 Score=67.69 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 284 DSRHSILESLRDCFMKKKAEIAVM 307 (885)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~ 307 (885)
+.....+..++..+..++.++..+
T Consensus 234 e~Kd~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 234 EEKDTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 85
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.35 E-value=1.7e-07 Score=81.68 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=32.3
Q ss_pred ceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 20 m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.++..+.+. ||+...+.++..+|| +.+|+|||||||||+||+|+
T Consensus 6 L~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~It 52 (249)
T COG4674 6 LYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVIT 52 (249)
T ss_pred EEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeec
Confidence 344444443 444446777777776 99999999999999999964
No 86
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=0.028 Score=69.64 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 207 ALVLELEATIKPTEKELSELQRKIRNMEHVEEITQDLQRLK 247 (885)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 247 (885)
..+......+..++.++..|..++..+........++..++
T Consensus 501 ~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~ 541 (1311)
T TIGR00606 501 KEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLT 541 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555554443333333333333
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.30 E-value=0.0012 Score=74.51 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=67.0
Q ss_pred CeeeechhhHhHhhhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002747 157 PCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHV 236 (885)
Q Consensus 157 ~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (885)
+++...+.....++....+...|...... ....+......+..+...+..+...+..+...+..+..... ..+
T Consensus 143 ~f~~~~~~er~~il~~l~~~~~~~~~~~~-----~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~--~~i 215 (562)
T PHA02562 143 PFMQLSAPARRKLVEDLLDISVLSEMDKL-----NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--ENI 215 (562)
T ss_pred hHhcCChHhHHHHHHHHhCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHH
Confidence 34444555556666655555555443322 33555556666666666666666666666666666555433 223
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 237 EEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEI 304 (885)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (885)
..+..++..+..... .+..++..++..+..+...+......+..+...+..++..+..+....
T Consensus 216 ~~l~~e~~~l~~~~~-----~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~~~ 278 (562)
T PHA02562 216 ARKQNKYDELVEEAK-----TIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVI 278 (562)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333 334444444444444444444444444444444444444444444333
No 88
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.29 E-value=0.011 Score=65.70 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=45.7
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH------------HHHHHHHH
Q 002747 175 DKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNME------------HVEEITQD 242 (885)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~~~ 242 (885)
...+|+++.....+..+...+..+..++..+...+..+...-..-...+..++.....+. .+..+...
T Consensus 94 ~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~ 173 (569)
T PRK04778 94 LNDKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQ 173 (569)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHH
Confidence 345666666666777777777777777777777766666555555555555554444332 34455555
Q ss_pred HHHHHHHHh
Q 002747 243 LQRLKKKLA 251 (885)
Q Consensus 243 ~~~~~~~~~ 251 (885)
+..+.....
T Consensus 174 l~~~e~~f~ 182 (569)
T PRK04778 174 LENLEEEFS 182 (569)
T ss_pred HHHHHHHHH
Confidence 555554443
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.26 E-value=0.0057 Score=64.33 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002747 200 NHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (885)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (885)
.+|..+.+.+...-..+..++.+-..|...+..+
T Consensus 42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~l 75 (546)
T KOG0977|consen 42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLL 75 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 90
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.5e-06 Score=77.08 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=31.9
Q ss_pred EEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 25 VRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 25 i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+.|=.-.++..+++.|| ++.|.|||||||||++.+++-
T Consensus 9 ~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsG 49 (259)
T COG4559 9 YSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG 49 (259)
T ss_pred EEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhC
Confidence 4444544457888899887 888999999999999999764
No 91
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.16 E-value=3.1e-06 Score=80.18 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=33.1
Q ss_pred CceeeEEEEEeccc---ccceeEEeCC-ceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGE-WVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~-~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
|+.++.+.+. ++. +.+..+.+.+ .+++|.|||||||||++.+|.-.|-
T Consensus 2 ~L~~~~ls~~-y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 2 MLEVENLSFG-YGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred eeEEEEEEEE-ECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4455555543 221 1455556666 4999999999999999999876654
No 92
>PRK11637 AmiB activator; Provisional
Probab=98.15 E-value=0.0024 Score=68.36 Aligned_cols=68 Identities=7% Similarity=0.166 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002747 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSF 704 (885)
Q Consensus 637 ~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 704 (885)
++.++..+..++..++.++..++.++.....++..+..++..+...+..++..+..++.++..+..++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444333333333
No 93
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=3.2e-06 Score=74.05 Aligned_cols=35 Identities=23% Similarity=0.445 Sum_probs=28.6
Q ss_pred cceeEEeCC-ceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
.+..++|.+ |+|.|+|||||||||++-.++-.+..
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~ 53 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK 53 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhccc
Confidence 345667765 69999999999999999998877654
No 94
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.05 E-value=6.9e-06 Score=73.63 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=25.6
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
++..+.+.+| +.+|+||+|||||||+.+|..
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4556667665 888999999999999999865
No 95
>COG4938 Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=4.4e-06 Score=77.19 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=42.1
Q ss_pred eeeEEEEEecccccceeEEeCCceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 21 TITRVRLENFMCHSSLQIELGEWVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 21 ~i~~i~l~nf~~~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
+|.++.+.||++|.+..|.+.| +||++|||.|||||.+.+|...+-+
T Consensus 1 mi~sl~l~nfk~y~n~~i~l~~-ltVF~G~NssGKSt~iqsl~li~s~ 47 (374)
T COG4938 1 MILSLSLKNFKPYINGKIILKP-LTVFIGPNSSGKSTTIQSLYLIYSG 47 (374)
T ss_pred CcceeeecCccceecceEEEec-ceEEEcCCCCchhHHHHHHHHHHHh
Confidence 4789999999999999999995 9999999999999999999776544
No 96
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.04 E-value=0.031 Score=62.16 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 375 ESEIEAKLKELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIED 426 (885)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~ 426 (885)
...+...+..+...+..+......+...+..+.....++...+..++..+..
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443333
No 97
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=9.1e-06 Score=73.62 Aligned_cols=51 Identities=25% Similarity=0.207 Sum_probs=35.9
Q ss_pred CCCceeeEEEEEecc--c-ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCC
Q 002747 17 SGAGTITRVRLENFM--C-HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAK 71 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~--~-~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~ 71 (885)
++|..|+.|++.==+ . .++..+.+.+| +++|.|||||||||+. +++.|.+.
T Consensus 1 m~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa----~~i~G~p~ 55 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLA----YTIMGHPK 55 (251)
T ss_pred CceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHH----HHHhCCCC
Confidence 356667777666332 2 26677788876 9999999999999955 45566665
No 98
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=8.2e-06 Score=76.92 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=25.8
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.+..+.+.+| ++.|+||||||||||+.+|.=.+
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4555666664 89999999999999999975433
No 99
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.02 E-value=0.03 Score=59.09 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=3.1
Q ss_pred cCCCccc
Q 002747 130 DHQGKRV 136 (885)
Q Consensus 130 ~~~g~~~ 136 (885)
+..|.++
T Consensus 96 ~~~g~V~ 102 (546)
T PF07888_consen 96 DQKGEVR 102 (546)
T ss_pred CCCccEE
Confidence 3445444
No 100
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1.3e-05 Score=78.51 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=33.6
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
||+.+..|.+. |+ -+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 1 ~~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 1 MSIEVRNVSKR-FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred CEEEEEeEEEE-ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45666666654 22 245677788776 88899999999999999985
No 101
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=1.4e-05 Score=76.06 Aligned_cols=46 Identities=24% Similarity=0.159 Sum_probs=34.7
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
||..++.+.+. |+ .+.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 1 m~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 1 MMLEGEDLACV-RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred CEEEEEeEEEE-ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46667777764 32 246677777776 888999999999999998754
No 102
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.93 E-value=1.5e-05 Score=78.86 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=38.0
Q ss_pred CCCCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 15 QRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 15 ~~~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.++.++.+..+.+. |+ -+.+..+.+.+| +++|+|||||||||++.+|.-.
T Consensus 2 ~~~~~l~~~~l~~~-~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 2 ASPPKMEARGLSFF-YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCcEEEEeeeEEE-ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34566777777764 32 246777788876 8899999999999999998643
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.93 E-value=0.13 Score=63.42 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVK 680 (885)
Q Consensus 637 ~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 680 (885)
-...|.+|+.+|..+..++..+..++..+...+..+..+...+.
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~P 783 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAP 783 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34567888888888888888888888888887777777766554
No 104
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.90 E-value=1.7e-05 Score=83.59 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=45.1
Q ss_pred cccCCC-CCCCCCCCCceeeEEEEEeccc------ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 5 RFSSES-GYGPQRSGAGTITRVRLENFMC------HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 5 ~~~~~~-~~~~~~~~~m~i~~i~l~nf~~------~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+|..++ .|+++...|..++.|.+.. +. +.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 6 ~~~n~tk~y~~~~~~mL~lknL~~~~-~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLa 71 (549)
T PRK13545 6 KFEHVTKKYKMYNKPFDKLKDLFFRS-KDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIA 71 (549)
T ss_pred EEEeeeeeccccccceeEEEEEEEec-CCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHh
Confidence 566666 7888888888888887552 22 35566777776 88899999999999999975
No 105
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.88 E-value=3.7e-06 Score=77.18 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=29.1
Q ss_pred ecccc---cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 29 NFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 29 nf~~~---~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.||.+ .++++++.+| ++.|+|||||||||+++.|.=
T Consensus 13 ~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG 52 (250)
T COG0411 13 RFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG 52 (250)
T ss_pred ecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc
Confidence 36665 5777788776 888999999999999988653
No 106
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.5e-05 Score=69.75 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=28.6
Q ss_pred cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 32 ~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
-|.+..|.|.+| +.+|+||||+||||++..|.=.+
T Consensus 17 lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc
Confidence 356777888886 88899999999999999876544
No 107
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.86 E-value=2.5e-05 Score=69.04 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||+|||||+++|.
T Consensus 16 l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~ 47 (144)
T cd03221 16 LKDISLTINPGDRIGLVGRNGAGKSTLLKLIA 47 (144)
T ss_pred EEeeEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 46677888886 78899999999999999974
No 108
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.85 E-value=0.027 Score=62.93 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002747 413 EKNEIRRISDEIEDYDKKCREIRSEIRELQQ 443 (885)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 443 (885)
+-..+...+.+++.+...+..-+.++..|..
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ 650 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444433
No 109
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.85 E-value=2.5e-05 Score=73.92 Aligned_cols=44 Identities=16% Similarity=0.368 Sum_probs=33.4
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.+.+. |+ -+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 1 ml~~~~l~~~-~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 1 MLDVIELDFD-YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred CEEEEEEEEE-eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566667654 32 246677888776 88899999999999999875
No 110
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.85 E-value=2e-05 Score=73.20 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=35.7
Q ss_pred CceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|+.+..+.+. | -+.+..+.|.+| +++|+||||||||||+.+|.-.
T Consensus 4 ~l~~~~l~~~-~-~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 4 VLEVRGLSVK-G-AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EEEEeccEEE-e-eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5666666654 3 568888888887 8889999999999999987543
No 111
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.84 E-value=2.6e-05 Score=74.11 Aligned_cols=45 Identities=27% Similarity=0.259 Sum_probs=34.1
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+... |+ -+.+..+.|.+| +++|+|||||||||++..|.-
T Consensus 1 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 1 MLEARNLACE-RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CeEEEEEEEE-ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4566666654 22 246777888887 889999999999999998654
No 112
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.84 E-value=0.036 Score=54.08 Aligned_cols=102 Identities=12% Similarity=0.203 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCc
Q 002747 635 GSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGPPSAS 714 (885)
Q Consensus 635 ~~~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 714 (885)
+.+..++..+..++..++.+....+.+.+....++.....+....+.+...+...+.+..+++..+..+... +..
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~-----lqt 151 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQD-----LQT 151 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 455666666666776666666666666666666666666666666666666666666666666666555555 555
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 715 AVDEISQEISNIQEEIQEKEIILEKLQ 741 (885)
Q Consensus 715 ~~~~l~~~l~~l~~~~~~~~~~~~~~~ 741 (885)
.+..+-.+...+..+...+......++
T Consensus 152 rl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 152 RLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554444444444444433333333
No 113
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.83 E-value=0.033 Score=53.43 Aligned_cols=87 Identities=15% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002747 745 NEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQD 824 (885)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 824 (885)
.++.+++..+..........+..+..+.+.+..++..+-...+.+...++.+...+. .....+..+..++..+.+++.+
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~v-e~~~~~~e~~ee~~~~~~elre 239 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFV-ELSKKIDELHEEFRNLQNELRE 239 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444444444 4444444444555555555555
Q ss_pred HHHHHhhh
Q 002747 825 SCRKASVI 832 (885)
Q Consensus 825 ~~~~~~~~ 832 (885)
+...+..+
T Consensus 240 ~~k~ik~l 247 (294)
T COG1340 240 LEKKIKAL 247 (294)
T ss_pred HHHHHHHH
Confidence 55544433
No 114
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.83 E-value=2.8e-05 Score=78.71 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=35.0
Q ss_pred CCCCCCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 14 PQRSGAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 14 ~~~~~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|....|+.++.|... |+. +.+..+.+.+| +..|.|||||||||++..|.
T Consensus 2 ~~~~~~i~i~~l~k~-~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~ 54 (306)
T PRK13537 2 PMSVAPIDFRNVEKR-YGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLL 54 (306)
T ss_pred CCCCceEEEEeEEEE-ECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 334445666666654 332 25566777776 88899999999999999986
No 115
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.83 E-value=0.0065 Score=52.60 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 651 VQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVK 701 (885)
Q Consensus 651 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 701 (885)
+......+...+..+.......+.++..+...+..++..+..+...+..+.
T Consensus 12 a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 12 AQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333334444444444444444444444444443333
No 116
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=2.9e-05 Score=76.83 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.|+.+..+.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.-.
T Consensus 5 ~~i~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 5 IILSTKNLNLW-YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred ceEEEeeeEEE-ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35666666654 22 246777888887 8889999999999999998643
No 117
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=2.8e-05 Score=76.58 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=33.1
Q ss_pred CceeeEEEEEe--cccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLEN--FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~n--f~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.|.+.- ..-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 45566665531 11246677788886 88899999999999999976
No 118
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.82 E-value=1.8e-05 Score=71.94 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=26.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai 62 (885)
+.+..+.|.+| +.+|+||||||||||+.+|
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 46777888886 8889999999999999987
No 119
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.82 E-value=0.071 Score=59.71 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002747 405 ALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQH 444 (885)
Q Consensus 405 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~ 444 (885)
+|-..+.+.+.++.-+...+..-..++.+|...+..+-.-
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566677777777777777777777777777776543
No 120
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=3.6e-05 Score=76.78 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=39.0
Q ss_pred CCCCCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 14 PQRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 14 ~~~~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.|...|+.+..|.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.-.
T Consensus 15 ~~~~~~l~~~nl~~~-~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 15 NPDHSVFEVEGVKVF-YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred CCCCceEEEeeEEEE-eCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344567888888775 32 246777888886 8889999999999999988633
No 121
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=2.6e-05 Score=77.22 Aligned_cols=45 Identities=20% Similarity=0.325 Sum_probs=33.9
Q ss_pred CCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 18 GAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
||+.++.+.+. |+. +.+..+.+.+| +.+|+|+|||||||++.+|.
T Consensus 1 ~~l~~~~l~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 1 MTLRTENLTVG-YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred CEEEEEeEEEE-ECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677777664 332 35566677777 88899999999999999985
No 122
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.81 E-value=3.3e-05 Score=75.09 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=34.3
Q ss_pred CCceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.|+.+..|.+. |+ -|.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 5 ~~l~~~~l~~~-~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 5 NIVEVHHLKKS-VGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred ceEEEeeeEEE-ccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 35666666653 22 246667788776 899999999999999999864
No 123
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.81 E-value=3.4e-05 Score=70.36 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=23.8
Q ss_pred eeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 36 LQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 36 ~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
..+...+| +++|.|+||+||||++.+|+-..
T Consensus 22 vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 22 VSLEVERGEIVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444554 88899999999999999986443
No 124
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=7e-05 Score=67.02 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=25.3
Q ss_pred cceeEEeCC-ceEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+++.+ .+|.|+||+|+||||++.++.-
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 455666655 4999999999999999999864
No 125
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.81 E-value=3e-05 Score=74.59 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=33.1
Q ss_pred CceeeEEEEEec----ccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENF----MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf----~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.+.+. | .-+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 1 ~l~~~~l~~~-~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 1 MIEFHNVSKA-YPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred CEEEEeeeEE-eCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556666654 2 1246677788887 88899999999999999875
No 126
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.4e-05 Score=75.55 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=33.3
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
||+.+..+.+. |+ .+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 2 ~~l~~~~l~~~-~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 2 NEIEFKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred ceEEEEeEEEE-eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44556666543 22 235677777776 888999999999999998763
No 127
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=3e-05 Score=76.18 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=33.1
Q ss_pred CCceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 18 ~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
||+.+..+.+. +-.-+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 1 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 1 MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred CEEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45556666553 111245667777776 88899999999999999975
No 128
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3.5e-05 Score=76.69 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=35.1
Q ss_pred CCCceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 17 SGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 17 ~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
..|+.+..|.+. +...+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 445666777653 111246677888886 889999999999999998853
No 129
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.80 E-value=3e-05 Score=76.66 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=32.6
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |+ -+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 3 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 3 KIEIRDLKVS-FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred eEEEEeeEEE-ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555666543 22 235666777776 888999999999999998853
No 130
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.79 E-value=3.4e-05 Score=76.64 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=36.1
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|+.|..+.+. |+ -+.+..+.|.+| +++|+|+||||||||+.+|.-.
T Consensus 10 ~l~i~~v~~~-~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 10 VLRTENLNVY-YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEEEeeeEEE-ECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6778888764 33 246777888886 8889999999999999988743
No 131
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.77 E-value=4e-05 Score=73.81 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=33.1
Q ss_pred CceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..++.+.+. |+ -+.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 1 ~l~~~~l~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 1 MIRFEQVSKA-YPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CeEEEEEEEE-ecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456666553 21 245667788776 888999999999999999764
No 132
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.77 E-value=3.5e-05 Score=75.90 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88999999999999999875
No 133
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.76 E-value=2.3e-05 Score=69.20 Aligned_cols=30 Identities=40% Similarity=0.556 Sum_probs=24.8
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+..+.|.+| +++|+|+||||||||+.+|.-
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTT
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecc
Confidence 456777776 899999999999999987643
No 134
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.76 E-value=4.2e-05 Score=72.08 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=31.0
Q ss_pred CceeeEEEEEeccc--ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC--HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~--~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.++.+.+. |.. .-+..+.+.+| +.+|+|+|||||||++.+|.-
T Consensus 1 ~l~~~~l~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 1 MLSLHQLQFN-IEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred CeEEEEeeEE-ECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3455556544 221 12256677776 888999999999999999854
No 135
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.76 E-value=3.9e-05 Score=74.99 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.7
Q ss_pred ceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 20 m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..+..+.+. +..-+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345555543 111246677788886 88899999999999999985
No 136
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.76 E-value=4.4e-05 Score=76.13 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=39.6
Q ss_pred CCCCCCceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 14 PQRSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 14 ~~~~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.|...|+.++.+.+. +-.-+.+..+.|.+| +++|+|+||||||||+.+|.-.+
T Consensus 19 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344557888888774 112346677788886 88999999999999999987443
No 137
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=4e-05 Score=75.73 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
+|+.+..+.+. |+ -+.+..+.+.+| +.+|+||||||||||+.+|.-.++
T Consensus 2 ~~l~~~~v~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (250)
T PRK14266 2 YRIEVENLNTY-FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMND 54 (250)
T ss_pred cEEEEEeEEEE-eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 45556666653 32 246677788776 888999999999999999965433
No 138
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.75 E-value=4.6e-05 Score=73.98 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=38.7
Q ss_pred CCCCceeeEEEEEecc------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 16 RSGAGTITRVRLENFM------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 16 ~~~~m~i~~i~l~nf~------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
...|+.+..+.+. |. -+.+..+.|.+| +++|+||||||||||+++|.-.
T Consensus 8 ~~~~l~~~~l~~~-~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 8 LKGIVKFQNVTFA-YPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cCceEEEEEEEEE-eCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567888888876 32 357778888876 8899999999999999988543
No 139
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.75 E-value=0.025 Score=49.72 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHH
Q 002747 729 EIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAI 808 (885)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 (885)
.+...+..+...........++...+..++..+...+..+...-..+..+.+.....+..+...+.+...... .+...+
T Consensus 89 kL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE-~aERsV 167 (205)
T KOG1003|consen 89 KLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE-FAERRV 167 (205)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH-HHHHHH
Confidence 3333344444444444444444444444444444445555444444445555555555555555544444444 444455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002747 809 KEAESQYRELELLRQDSCR 827 (885)
Q Consensus 809 ~~~~~~~~~l~~~l~~~~~ 827 (885)
..++..+++++..+.....
T Consensus 168 akLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 168 AKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHcccHHHHHHhhHHHHH
Confidence 5555555555544444333
No 140
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=3.9e-05 Score=69.37 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+..+.|.+| +++|+|+||+|||||+++|...+
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45667788875 88899999999999999987544
No 141
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.74 E-value=0.067 Score=54.43 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNR 690 (885)
Q Consensus 637 ~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 690 (885)
++.+|..++..+.....+...++.++..++.++..+..++......+..+...+
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 334444444444444444444444444444444444444433333333333333
No 142
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.74 E-value=0.043 Score=58.01 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002747 257 DVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFM 298 (885)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (885)
.+..++..+...++.++..+..+..+...+...+..+...+.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444333
No 143
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=3.5e-05 Score=75.66 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=32.3
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. |+ -+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 3 ~l~~~~l~~~-~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 3 TLTAKNLAKA-YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred eEEEeCcEEE-eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4555555543 22 235666777776 888999999999999998763
No 144
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=4.6e-05 Score=76.08 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=33.3
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..+..|.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 1 ml~~~~l~~~-~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 1 MLATSDLWFR-YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred CeEEEEEEEE-cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 4556666654 32 246777888887 88899999999999999875
No 145
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.74 E-value=4.1e-05 Score=75.09 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=32.0
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+. |+ -+.+..+.|.+| +++|+|||||||||++..|.
T Consensus 4 ~l~~~~l~~~-~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 4 LVSLENVSVS-FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEEeceEEE-ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4555555543 22 235667777776 88899999999999999875
No 146
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.73 E-value=4.3e-05 Score=77.42 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=32.6
Q ss_pred CCceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 18 ~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|++.+..+... +..-+.+..+.+.+| +.+|+|||||||||++..|.
T Consensus 1 ~~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 1 MSIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred CEEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 34555555543 111235667777887 89999999999999999874
No 147
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=4.7e-05 Score=75.26 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=33.3
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.|..+.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 3 ~l~~~~l~~~-~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 3 IIEIENFSAY-YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEEEEeeEEE-eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556666553 22 245667777776 888999999999999998774
No 148
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.72 E-value=4.9e-05 Score=73.11 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788886 88899999999999999986
No 149
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=5e-05 Score=73.32 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888876 88899999999999999876
No 150
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=4.2e-05 Score=75.51 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=33.3
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |+ -+.+..+.+.+| +++|+|||||||||++.+|.-
T Consensus 3 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (249)
T PRK14253 3 KFNIENLDLF-YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNR 51 (249)
T ss_pred eEEEeccEEE-ECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4555666543 22 246667778886 889999999999999999864
No 151
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=4.7e-05 Score=75.16 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=34.3
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.|+.++.+.+. |+ -+.+..+.+.+| +++|+|||||||||++.+|.-
T Consensus 2 ~~l~~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 2 VKIDARDVNFW-YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred cEEEEEEEEEE-ECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35666767654 22 245667777775 888999999999999999864
No 152
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.71 E-value=4.9e-05 Score=75.18 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=32.9
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+. +...+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566666543 111246677788887 88899999999999999875
No 153
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.71 E-value=4.7e-05 Score=77.28 Aligned_cols=45 Identities=24% Similarity=0.236 Sum_probs=33.2
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+|+.++.|... |+ -+.+..+.+.+| +++|+|||||||||++.+|.
T Consensus 3 ~~i~~~~l~~~-~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 3 VAIDLVGVSKS-YGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred cEEEEEeEEEE-eCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 35566666543 22 235667777787 88899999999999999975
No 154
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.71 E-value=5.9e-05 Score=72.82 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+|+|||||||++.+|.
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 45667788886 88899999999999999985
No 155
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=3.7e-05 Score=73.74 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.7
Q ss_pred ccceeEEeCCceEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEWVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+|+.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhC
Confidence 46777888889888999999999999999863
No 156
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.71 E-value=0.13 Score=56.89 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=31.5
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002747 176 KDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR 231 (885)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (885)
..+|+++.....+..+...+..+..++..+...+.++...-..-...+..+.....
T Consensus 91 ~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~ 146 (560)
T PF06160_consen 91 ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYR 146 (560)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666666666655544444444444444433
No 157
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.71 E-value=5.4e-05 Score=74.55 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=33.1
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.++.|.+. +..-+.+..+.+.+| +.+|+|+|||||||++.+|.-
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3455666543 112246677788886 888999999999999998763
No 158
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.71 E-value=5.2e-05 Score=74.35 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=32.9
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. +-.-+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3455555553 111246677788886 888999999999999998763
No 159
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=5e-05 Score=75.36 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=35.1
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|+.|+.|.+. |+ -+.+..+.+.+| +++|+||||||||||+..|.-.+
T Consensus 12 ~l~i~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 12 VYQINGMNLW-YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred eEEEeeEEEE-ECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567777763 32 235667777786 88999999999999999987443
No 160
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=5.5e-05 Score=75.05 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=34.0
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
+..|..+.+. +..-+.+..+.|.+| +++|+||||||||||+..|.-.+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4555666554 112245677788886 88899999999999999876543
No 161
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=6.3e-05 Score=73.29 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.5
Q ss_pred CceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+.--..+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 1 ~l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred CeEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456666654211223556677776 88899999999999999874
No 162
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.70 E-value=0.13 Score=56.46 Aligned_cols=258 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhH------
Q 002747 180 KFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM-EHVEEITQDLQRLKKKLAW------ 252 (885)
Q Consensus 180 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------ 252 (885)
.+...........+.-+.+...+....+.++-+.-..+-.+...+.|+.+++.+ +++.++.-++.-++.+...
T Consensus 284 el~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~ 363 (1243)
T KOG0971|consen 284 ELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQ 363 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-
Q 002747 253 ----SWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISL- 327 (885)
Q Consensus 253 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (885)
..++.+..+-..++..+-.++.-..........+..+++....++.++......+..+++..+..+..++.++..
T Consensus 364 ~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA 443 (1243)
T KOG0971|consen 364 AASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA 443 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002747 328 --ATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAANITLSRMKEEDSA 405 (885)
Q Consensus 328 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 405 (885)
+..-+..+...--.++..+..++..+..++. +.++.+++.+.......++..+++.+...+..+..++......+-.
T Consensus 444 lGAE~MV~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yD 522 (1243)
T KOG0971|consen 444 LGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYD 522 (1243)
T ss_pred hcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 406 LSEKLSKEKNEIRRISDEIEDYDKKCREIRSEI 438 (885)
Q Consensus 406 l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (885)
....+...+.....++.++..+..+......+.
T Consensus 523 rdqTI~KfRelva~Lqdqlqe~~dq~~Sseees 555 (1243)
T KOG0971|consen 523 RDQTIKKFRELVAHLQDQLQELTDQQESSEEES 555 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHh
No 163
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=5.4e-05 Score=76.15 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=27.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+|||||||||++.+|+-
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46677888887 888999999999999999863
No 164
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=5.9e-05 Score=74.84 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.|+.+..+.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.-.
T Consensus 12 ~~l~~~~l~~~-~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 12 SKIQVRNLNFY-YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred ceEEEEEEEEE-eCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34455555543 22 235667777776 8889999999999999998643
No 165
>PRK10908 cell division protein FtsE; Provisional
Probab=97.69 E-value=6.1e-05 Score=72.83 Aligned_cols=44 Identities=23% Similarity=0.464 Sum_probs=32.3
Q ss_pred CceeeEEEEEec-c---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENF-M---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf-~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.+.+. | + -+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 1 ~l~~~~l~~~-~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 1 MIRFEHVSKA-YLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred CEEEEeeEEE-ecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3455555543 2 1 246677788776 88899999999999999986
No 166
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=5.9e-05 Score=73.55 Aligned_cols=45 Identities=24% Similarity=0.295 Sum_probs=34.7
Q ss_pred CceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.++.+.+. |. -+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 5 LLQCDNLCKR-YQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred eEEEEeEEEE-cCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5677777764 22 246667778786 889999999999999999864
No 167
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=5.7e-05 Score=75.94 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=34.5
Q ss_pred CCceeeEEEEEecc--------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|++.++.|.+. |. -+.+..+.+.+| +++|+|||||||||++.+|+-
T Consensus 1 ~~l~~~~l~~~-y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 1 MTIRFDNVSYT-YQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred CEEEEEEEEEE-ECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34566666654 32 346677788887 889999999999999999863
No 168
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=5.2e-05 Score=75.64 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=33.7
Q ss_pred CceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.|..+.+. |+ .+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 7 ~l~i~~l~~~-~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 7 IIVFKNVSFQ-YQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred eEEEEEEEEE-cCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5666666654 22 245677788887 88899999999999999985
No 169
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=6.3e-05 Score=77.28 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCCCCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 15 QRSGAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 15 ~~~~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.++.|+.+..|... |+. +.+..+.+.+| +++|+|||||||||++.+|.
T Consensus 2 ~~~~~l~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 2 TQKNFVVLKNITKR-FGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred CCCcEEEEEeEEEE-ECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 44556777777764 333 35667778776 89999999999999999975
No 170
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=5.4e-05 Score=74.97 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=34.4
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. +..-+.+..+.+.+| +++|+|+||||||||+.+|.-
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNR 55 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566666654 222346677788887 888999999999999999853
No 171
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.69 E-value=6.1e-05 Score=72.16 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 788999999999999999873
No 172
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.69 E-value=2.5e-05 Score=75.37 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=25.6
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 69 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLA 69 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566777776 88899999999999999986
No 173
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=6.7e-05 Score=74.35 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=37.1
Q ss_pred CCCCCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 14 PQRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 14 ~~~~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+-+..|..+..+.+. |+ -+.+..+.+.+| +++|+|+|||||||++.+|.
T Consensus 7 ~~~~~~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 7 NVAQPQIKVENLNLW-YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred cccceeEEEeeeEEE-eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334566777777763 32 246677788887 88899999999999999986
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.69 E-value=5.8e-05 Score=74.91 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=32.6
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..+..|.+. |+ -+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 1 ml~~~nl~~~-~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG 49 (272)
T PRK13547 1 MLTADHLHVA-RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 (272)
T ss_pred CeEEEEEEEE-ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455555542 22 245667778887 888999999999999998853
No 175
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.69 E-value=6e-05 Score=72.91 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 21 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45667777776 888999999999999999853
No 176
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.68 E-value=0.0015 Score=74.47 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=24.1
Q ss_pred eeEEeCC--ceEEEEcCCCCchHHHHHHHHHH
Q 002747 36 LQIELGE--WVNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 36 ~~i~f~~--~~~~I~G~NgsGKSti~dai~~~ 65 (885)
.+|.+++ .+.+|+||||+||||++..|.-+
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 4556654 48899999999999999999643
No 177
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=6e-05 Score=74.13 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
||..+..|.+. |+ .+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 1 ~~~~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 1 MIAKTTNLNLF-YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred CceeeeeeEEE-ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44556666654 32 246677788886 888999999999999998864
No 178
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.68 E-value=5.4e-05 Score=74.79 Aligned_cols=46 Identities=28% Similarity=0.339 Sum_probs=33.5
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.|+.|.+. +..-+.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4566666654 212246677777776 888999999999999998653
No 179
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=6.2e-05 Score=75.67 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=32.4
Q ss_pred CceeeEEEEEecc--------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+..+..+.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 2 ~l~~~~l~~~-~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 2 GINLQNVSYT-YQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred eEEEEEEEEE-cCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3555666553 32 235667777776 88899999999999999975
No 180
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=6.5e-05 Score=74.96 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=34.6
Q ss_pred CceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|+.++.|.+. |+ -+.+..+.|.+| +++|+|||||||||++.+|+-.
T Consensus 1 ml~~~~l~~~-~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 1 MIRLENVSYS-YPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred CEEEEEEEEE-cCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4556666653 31 346777888887 8999999999999999998643
No 181
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.68 E-value=5.2e-05 Score=75.19 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=26.0
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.|.+| +.+|.||||||||||+..|.-
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5566777776 888999999999999998763
No 182
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.68 E-value=6.4e-05 Score=72.72 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=33.2
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..++.+.+. |+ -+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 7 ~i~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 7 LLQLQNVGYL-AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred eEEEeccEEe-eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566666643 22 246677788886 888999999999999998753
No 183
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.67 E-value=6.3e-05 Score=77.42 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=34.7
Q ss_pred CCCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 17 SGAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.|+.+..|... |+. +.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 2 ~~~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaG 52 (353)
T TIGR03265 2 SPYLSIDNIRKR-FGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG 52 (353)
T ss_pred CcEEEEEEEEEE-eCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 345667777654 333 35667777775 899999999999999998763
No 184
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.67 E-value=7.7e-05 Score=74.50 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=36.3
Q ss_pred CCCCceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 16 RSGAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 16 ~~~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
...|+.+..+.+. +-..+.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laG 73 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNR 73 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446677777764 111246677788886 889999999999999999853
No 185
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.67 E-value=5.3e-05 Score=75.53 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=32.7
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.|.+. |+ -+.+..+.+.+| +.+|+||||||||||+.+|.
T Consensus 7 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 7 LVDMRGVSFT-RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred eEEEeCeEEE-ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566666543 22 235667777776 88899999999999999876
No 186
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.67 E-value=6e-05 Score=73.04 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999864
No 187
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.67 E-value=6.9e-05 Score=71.63 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=26.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++..|.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 45667788776 88899999999999999975
No 188
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=8.5e-05 Score=74.14 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=38.2
Q ss_pred CCCCCCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 14 PQRSGAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 14 ~~~~~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..+.+|..|..|.+. |+. +.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 ~~~~~~l~i~nl~~~-~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 16 DAAAPAMAAVNLTLG-FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred cccCcEEEEeeEEEE-ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 345667788888875 432 36777788886 88899999999999999985
No 189
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=6.5e-05 Score=73.40 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999986
No 190
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=7.7e-05 Score=69.04 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.1
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667777776 88899999999999999986
No 191
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.66 E-value=7.1e-05 Score=73.54 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.++.+..|.+. |+ -+.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 11 ~~l~i~~l~~~-~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 11 TPLLLNAVSKR-YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CcEEEEEEEEE-ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34666666654 22 246677788876 899999999999999998763
No 192
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.66 E-value=5.9e-05 Score=73.65 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=26.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667778886 88899999999999999885
No 193
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=5.7e-05 Score=73.90 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=33.4
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.+.+. |+ .+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 5 MLSFDKVSAH-YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred EEEEEeEEEe-eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 4666666664 32 236677788887 88899999999999999875
No 194
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.66 E-value=7.3e-05 Score=76.52 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=25.7
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.+.+| ++.|+|||||||||++..|.-
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 4556677776 888999999999999999853
No 195
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.66 E-value=8.1e-05 Score=67.54 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=26.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.|| +.+|+||||||||||+..|.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667778887 77799999999999999874
No 196
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=8.2e-05 Score=74.03 Aligned_cols=46 Identities=26% Similarity=0.319 Sum_probs=34.9
Q ss_pred CCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 17 SGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..|+.+..+.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 9 ~~~l~i~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 9 DTTFALRNVSFR-VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred CceEEEeeEEEE-ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 346777777753 32 246677788886 88899999999999999865
No 197
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.65 E-value=6.7e-05 Score=77.26 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=34.8
Q ss_pred CCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
||+.|..|... |+. +.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 1 ~~L~i~~l~~~-~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 1 MSIEIANIKKS-FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred CEEEEEEEEEE-eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 55667777654 332 35667777776 899999999999999998764
No 198
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=7.9e-05 Score=74.18 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=37.3
Q ss_pred CCCCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 15 QRSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 15 ~~~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+...|..+..+.+. |+ .+.+..+.+.+| +++|+||||||||||+..|.-
T Consensus 9 ~~~~~l~i~nl~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 9 SKNIIISLQNVTIS-YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred CCCceEEEEeEEEE-ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34556777777654 33 246777888887 888999999999999999764
No 199
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=7.1e-05 Score=71.87 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.+| +++|+|||||||||++.+|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999875
No 200
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.65 E-value=6.8e-05 Score=74.24 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=34.2
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 5 ILQVSDLSVY-YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred eEEEEeeEEE-ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566667654 22 246777888887 888999999999999999754
No 201
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.65 E-value=6.4e-05 Score=74.44 Aligned_cols=46 Identities=24% Similarity=0.188 Sum_probs=33.7
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. +..-+.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG 51 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4666666654 111246677788776 888999999999999997653
No 202
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.65 E-value=7.3e-05 Score=72.85 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 899999999999999998763
No 203
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.64 E-value=7.7e-05 Score=73.71 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=32.2
Q ss_pred ceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 20 GTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 20 m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
..|..+.+. +..-+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 445555543 111245667778787 888999999999999999764
No 204
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.64 E-value=6.8e-05 Score=73.70 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=33.4
Q ss_pred CceeeEEEEEe--cccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLEN--FMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~n--f~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+.- ..-+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 50 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITG 50 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 45566665431 11246777888886 888999999999999998764
No 205
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.64 E-value=4.7e-05 Score=71.49 Aligned_cols=31 Identities=32% Similarity=0.385 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888887 88999999999999999875
No 206
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.64 E-value=5.5e-05 Score=66.28 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=25.6
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.+..+...+| +.+|+||+||||||++.-|+-..
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 3445666665 88899999999999999876543
No 207
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=6.5e-05 Score=74.56 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=34.3
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.|..+.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 5 LLSVSGLMMR-FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred eEEEeeEEEE-ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 5677777764 33 236677788776 888999999999999998763
No 208
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.64 E-value=6.7e-05 Score=74.31 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=33.5
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+. +..-+.+..+.|.+| +.+|+|+|||||||++.+|.
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 4666666653 112346777888887 88899999999999999864
No 209
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.64 E-value=8e-05 Score=70.43 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46677778776 888999999999999998653
No 210
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.63 E-value=0.17 Score=56.05 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002747 187 LLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNM 233 (885)
Q Consensus 187 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (885)
.+......+.....+.+++.....++......++.+...++.++..+
T Consensus 42 elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 42 ELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555544
No 211
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=9e-05 Score=68.19 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=26.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.+| +.+|+|||||||||++..|.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999864
No 212
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.63 E-value=0.0001 Score=68.55 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=27.7
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.+..+.+.+| +++|+||+||||||+|..|-...-
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 5667777776 999999999999999998765443
No 213
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.63 E-value=8.2e-05 Score=73.92 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=36.7
Q ss_pred CCCceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 17 SGAGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
...+.+..+.+.+-.-+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 37 ~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 37 DNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred CCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344677777775433457788888887 88899999999999999874
No 214
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.00011 Score=67.50 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=27.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+..+.|.+| +++|+|||||||||++.+|.-.
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 46677788776 8999999999999999998543
No 215
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.62 E-value=7.6e-05 Score=77.74 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.0
Q ss_pred CCceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+|+.++.|.+. |+. +.+..+.+.+| +.+|+|||||||||++..|.-
T Consensus 2 ~~L~~~nls~~-y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 2 PMIDVSDLSVE-FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred ceEEEeeEEEE-ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 35667777653 332 35666777776 788999999999999999753
No 216
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=8.4e-05 Score=73.50 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=34.5
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|+.+..+.+. |+. +.+..+.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 4 ~l~~~~l~~~-~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 4 IISAKDVHLS-YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eEEEEeeEEE-ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4566666664 332 35667777776 78899999999999999987543
No 217
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.62 E-value=5e-05 Score=72.42 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.1
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.|.+| +++|+|||||||||++..|.-
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567788876 888999999999999998763
No 218
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=0.00011 Score=74.66 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=34.8
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.|..|.+. |+ -+.+..+.|.+| +++|+|+||||||||+.+|.-
T Consensus 45 ~l~i~nl~~~-~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~G 93 (305)
T PRK14264 45 KLSVEDLDVY-YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 (305)
T ss_pred eEEEEEEEEE-eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5677777764 33 246677788776 888999999999999999863
No 219
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.62 E-value=0.00011 Score=67.73 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=27.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667778776 889999999999999999864
No 220
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.62 E-value=7.2e-05 Score=73.28 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHc
Confidence 46677788887 88899999999999999875
No 221
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.62 E-value=5e-05 Score=72.33 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46667778776 88999999999999999875
No 222
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=8.3e-05 Score=74.55 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=33.7
Q ss_pred CceeeEEEEEecc---------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..+..|.+. |+ -+.+..+.+.+| +++|+|+||||||||+.+|.
T Consensus 4 ~l~~~~l~~~-~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 57 (280)
T PRK13633 4 MIKCKNVSYK-YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMN 57 (280)
T ss_pred eEEEeeeEEE-cCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566666664 32 335667777887 88899999999999999986
No 223
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=8e-05 Score=73.74 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNR 52 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46667788887 888999999999999998753
No 224
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9.2e-05 Score=73.70 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=34.0
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
++.+..|.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.-.+
T Consensus 19 ~l~~~nl~~~-~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 19 KMRARDVSVF-YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred eEEEEeEEEE-ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4555555554 22 246677788776 88899999999999999987433
No 225
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9.1e-05 Score=73.46 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=35.8
Q ss_pred CCceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 18 GAGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 18 ~~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.++.+..+.+. +..-+.+..+.+.+| +++|+|+||||||||+..|.-.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35666666653 111246777888887 88899999999999999987543
No 226
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.61 E-value=9.2e-05 Score=71.78 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 56 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYA 56 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667777776 888999999999999998753
No 227
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=9.3e-05 Score=74.23 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=34.4
Q ss_pred CceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.|..|.+. |. .+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 5 ~l~i~~l~~~-~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 5 IVEFKHVSFT-YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred eEEEEEEEEE-cCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 5667777764 32 246677788887 89999999999999999985
No 228
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.61 E-value=8.7e-05 Score=73.43 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=32.9
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 2 ~l~~~~l~~~-~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 50 (258)
T PRK13548 2 MLEARNLSVR-LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG 50 (258)
T ss_pred eEEEEeEEEE-eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4455665543 22 246667778776 888999999999999999863
No 229
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.61 E-value=5.4e-05 Score=73.08 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 20 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 20 LKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred EeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhC
Confidence 45667778776 889999999999999999863
No 230
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9e-05 Score=73.94 Aligned_cols=47 Identities=15% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.|..+..+.+. |+ -+.+..+.|.+| +.+|+|+|||||||++.+|.-.
T Consensus 20 ~~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 20 HILEVKDLSIY-YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred ceEEEEEEEEE-eCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35667777653 32 236677788887 8889999999999999998643
No 231
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.60 E-value=7e-05 Score=71.85 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 46777888886 88899999999999999886
No 232
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.60 E-value=9.8e-05 Score=71.77 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-.+
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45667788887 88899999999999999987544
No 233
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.60 E-value=4.8e-05 Score=74.71 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=32.7
Q ss_pred ceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 20 GTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 20 m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|.+..|.+. ..+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 1 ~~~~~l~~~--~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 1 MQLNDVAVS--TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred Ccccccchh--ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 345555554 2467788888876 888999999999999998753
No 234
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=8.8e-05 Score=72.96 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 889999999999999999863
No 235
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=9.9e-05 Score=73.04 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=34.9
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |+. +.+..+.|.+| +++|+|+||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 5 IITSSDVHLF-YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred eEEEEeEEEE-ECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4667777764 332 46677788887 899999999999999999864
No 236
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=0.0001 Score=73.53 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=34.6
Q ss_pred CceeeEEEEEe-cc--cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLEN-FM--CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~n-f~--~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+.. .+ -+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 56677777642 11 246677788887 888999999999999999863
No 237
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=9.3e-05 Score=73.11 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=33.3
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. |+ .+.+..+.|.+| +++|+|+||||||||+.+|.-
T Consensus 4 ~l~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 4 KMESKNLNLW-YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred EEEEEEeEEE-ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4556666553 32 245667778776 888999999999999999863
No 238
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.59 E-value=7.9e-05 Score=74.15 Aligned_cols=43 Identities=28% Similarity=0.405 Sum_probs=31.6
Q ss_pred ceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 20 GTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 20 m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..|..+.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 8 l~i~~l~~~-~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 8 LRGEQLTLG-YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred EEEEEEEEE-ECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 445555543 22 235667788887 88999999999999999875
No 239
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=8.9e-05 Score=74.45 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=32.6
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
++.+..|.+. |+ -+.+..+.+.+| +.+|+||||||||||+.+|.-
T Consensus 39 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 39 HVVAKNFSIY-YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EEEEeeeEEE-ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555665543 22 235666777776 888999999999999999863
No 240
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.59 E-value=9.4e-05 Score=73.33 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred CceeeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
++.++.|.+. +..-+.+..+.+.+| +.+|+|+||||||||+.+|.-
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 53 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF 53 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4566666654 112246677788887 778999999999999998763
No 241
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0001 Score=73.32 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=31.0
Q ss_pred CceeeEEEEEecccc---cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~---~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..|+.|.- .|+.+ .+..+.+.+| +.+|+|||||||||+|..|.-
T Consensus 3 ~i~l~~v~K-~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 3 ELELKNVRK-SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEEeeeEE-EcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344444442 24442 3455666665 999999999999999998764
No 242
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.59 E-value=6.4e-05 Score=68.45 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=27.1
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46677888886 889999999999999999753
No 243
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.58 E-value=9.8e-05 Score=70.76 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=34.1
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+. |+ -+.+..+.+.+| +.+|+|+||||||||+.+|.
T Consensus 11 ~l~~~~l~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 11 LLAAHALAFS-RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred eEEEeeEEEe-cCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHh
Confidence 5667777764 32 246677788886 88899999999999999985
No 244
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.58 E-value=6.3e-05 Score=72.74 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=27.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 899999999999999999764
No 245
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00011 Score=72.26 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888876 88899999999999999875
No 246
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00011 Score=73.96 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=27.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~G 55 (287)
T PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG 55 (287)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 35667788887 899999999999999999863
No 247
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00011 Score=73.33 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=33.2
Q ss_pred CceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..++.|.+. |+ -+.+..+.+.+| +++|+|||||||||++.+|.
T Consensus 1 ~l~~~~l~~~-~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 1 ILETRDLKYS-YPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred CEEEEEEEEE-eCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3456666654 21 346677788887 88899999999999999875
No 248
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.58 E-value=8.9e-05 Score=73.03 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667778887 889999999999999999753
No 249
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=6.1e-05 Score=72.74 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 20 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred EeceeEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 35667778786 88899999999999999976
No 250
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00012 Score=70.13 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=24.9
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+..+.|.+| +++|+|||||||||++.+|.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 556677776 88999999999999999885
No 251
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.57 E-value=6.6e-05 Score=70.28 Aligned_cols=28 Identities=36% Similarity=0.416 Sum_probs=23.9
Q ss_pred eeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 36 LQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 36 ~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..|+|++| +++|+||||+||||++.+|.
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHH
Confidence 45666665 99999999999999999996
No 252
>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins. The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.
Probab=97.57 E-value=0.00037 Score=59.61 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=81.6
Q ss_pred CCcccccccEEecCCCChHHHHHHHHccccCeEEecChhhHHHHHHHHHHhCCCCccEEEEecCCCCCCCCCCCC--CCC
Q 002747 474 PPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSLPHHML--PHT 551 (885)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 551 (885)
.++|.+.+++.+ + +.|..+++.++|+.+.+++|.+..++..+...++..+.++.+|++++............. +.+
T Consensus 3 gv~G~l~dli~v-~-~~~~~Ave~~LG~~l~~iVV~~~~~a~~~i~~l~~~~~gr~~~i~l~~~~~~~~~~~~~~~~~~~ 80 (120)
T PF06470_consen 3 GVLGRLADLIEV-D-PKYEKAVEAALGGRLQAIVVEDEETAKKIIEFLKENKLGRATFIPLDKIRSRSSASSADQIRPPG 80 (120)
T ss_dssp TEEEEGGGSEEE-S-GGGHHHHHHHHGGGGGSEEESSHHHHHHHHHHHHHTTSCEEEEEETTTTGGGTTSCCCGGHHSTT
T ss_pred CeeeeHHhceec-C-HHHHHHHHHHHHHhhceEEECcHHHHHHHHHHHhhccCCeEEEEECccccccccccchhhccCCc
Confidence 457889999999 6 799999999999999999999999999999999987788888887765432221111110 124
Q ss_pred CCCchhhccccCchHHHHHhhccCCcceEEEeCChHHHHHH
Q 002747 552 KHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAV 592 (885)
Q Consensus 552 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (885)
...++++.+.+.++.+...+. .-+++++++++...+..+
T Consensus 81 ~~~~l~d~i~~~d~~~~~~~~--~llg~~~vv~~l~~A~~l 119 (120)
T PF06470_consen 81 GAGPLIDLIEFPDEEYRPALE--FLLGDVVVVDDLEEARKL 119 (120)
T ss_dssp SEEEGGGGEEESCGGGHHHHH--HHHTTEEEESSHHHHHHH
T ss_pred chHHHHHhcccCcHHHHHHHH--HHcCCEEEECCHHHHHHh
Confidence 556677778874433333221 113468899999887665
No 253
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=73.46 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=33.7
Q ss_pred CceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.|..+.+. |+ -+.+..+.|.+| +++|+|||||||||++.+|+
T Consensus 5 ~l~~~~l~~~-~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 5 IIRVEHISFR-YPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred eEEEEEEEEE-eCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3566667664 22 236677788887 89999999999999999886
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.00012 Score=72.90 Aligned_cols=46 Identities=17% Similarity=0.352 Sum_probs=35.0
Q ss_pred CCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 17 SGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..+..++.+.+. |+ -+.+..+.|.+| +++|+|+||||||||+.+|.
T Consensus 14 ~~~l~~~~l~~~-~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 14 QQKSEVNKLNFY-YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred CceEEEEEEEEE-ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 444666777663 32 246777788886 89999999999999999985
No 255
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.57 E-value=6.3e-05 Score=64.55 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=30.0
Q ss_pred CCceeeEEEEEecccccceeEEeCCceEE-EEcCCCCchHHHHHHHHHHhcC
Q 002747 18 GAGTITRVRLENFMCHSSLQIELGEWVNF-ITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 18 ~~m~i~~i~l~nf~~~~~~~i~f~~~~~~-I~G~NgsGKSti~dai~~~l~~ 68 (885)
+||.++.+...- ...+...+...|... ++||||+||||++.++.-.+.+
T Consensus 2 ~l~qln~v~~~t--RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~ 51 (248)
T COG4138 2 ILMQLNDVAEST--RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 51 (248)
T ss_pred ceeeeccccccc--cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC
Confidence 567777665432 123333333445333 6799999999999987654433
No 256
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00012 Score=74.02 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+..+.+.+| +++|+||||||||||+.+|.-.
T Consensus 23 l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred eeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45667777776 8999999999999999998743
No 257
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.57 E-value=0.00011 Score=72.75 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45677788876 88899999999999999985
No 258
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=73.63 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=33.9
Q ss_pred CceeeEEEEEecc------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |+ .+.+..+.+.+| +++|+|+|||||||++.+|+-
T Consensus 4 ~l~~~~l~~~-~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 4 IIEVKNLTFK-YKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred eEEEEeEEEE-cCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4666667664 22 345667777776 889999999999999998853
No 259
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.0001 Score=73.60 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred CceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+. |+ -+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 6 ~l~~~~l~~~-~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 6 GIVVNDVTVT-WRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred eEEEEeEEEE-ecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3556666543 21 245667778787 88899999999999999875
No 260
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.57 E-value=0.063 Score=49.26 Aligned_cols=91 Identities=8% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002747 313 EVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCEIDAA 392 (885)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (885)
++-.-+.....++..++..+...+.........+.....++..+...+..+..-.....-.+.+++...+..+...++..
T Consensus 58 ~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~ 137 (194)
T PF15619_consen 58 ELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEK 137 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444445544444443222222233455555666666666665
Q ss_pred HHHHHHhHHHH
Q 002747 393 NITLSRMKEED 403 (885)
Q Consensus 393 ~~~~~~l~~~~ 403 (885)
...+..+...+
T Consensus 138 ~~ki~~Lek~l 148 (194)
T PF15619_consen 138 EKKIQELEKQL 148 (194)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 261
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.56 E-value=0.00011 Score=76.51 Aligned_cols=44 Identities=20% Similarity=0.364 Sum_probs=31.8
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
++.|..|... |+. +.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 3 ~l~i~~l~~~-~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia 50 (369)
T PRK11000 3 SVTLRNVTKA-YGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (369)
T ss_pred EEEEEEEEEE-eCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3455555543 222 35666777775 88999999999999999886
No 262
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.00012 Score=68.66 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=26.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 35666777776 88899999999999999975
No 263
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00011 Score=73.34 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=33.9
Q ss_pred CceeeEEEEEec-----ccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENF-----MCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf-----~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..+..+.+. | .-+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 7 ~l~~~nl~~~-~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (271)
T PRK13632 7 MIKVENVSFS-YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT 56 (271)
T ss_pred EEEEEeEEEE-cCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667777654 2 1246677888887 88999999999999999875
No 264
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00011 Score=75.75 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=32.7
Q ss_pred CceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.|.+. |+ -+.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 1 mi~i~~l~~~-y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 1 MIELKNISKV-FPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred CEEEEeEEEE-eCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4556666653 32 235667788886 88899999999999999875
No 265
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.56 E-value=0.00012 Score=70.28 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 16 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 778999999999999998763
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.56 E-value=0.00015 Score=69.12 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=35.0
Q ss_pred CCceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.++.+..+.+. |+ .+.+..+.|.+| +++|+|+||||||||+.+|.-
T Consensus 5 ~~l~~~~l~~~-~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 5 GEIEVENLSVR-YAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CeEEEEEEEEE-eCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34666777664 32 346777888886 888999999999999998853
No 267
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.55 E-value=0.00011 Score=71.62 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=27.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46677788886 888999999999999999863
No 268
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.55 E-value=0.00012 Score=72.88 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred eeCceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 888999999999999998753
No 269
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.55 E-value=0.00011 Score=73.19 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=33.4
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 4 ~l~~~nl~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 52 (262)
T PRK09984 4 IIRVEKLAKT-FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG 52 (262)
T ss_pred EEEEeeEEEE-eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4556666554 22 246677788776 888999999999999998863
No 270
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.55 E-value=0.00011 Score=73.11 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred EeceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999875
No 271
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.55 E-value=0.22 Score=55.16 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKEL 695 (885)
Q Consensus 640 ~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 695 (885)
+|+.|++++..++.+-..+...+...+..+...+..+......+..+...+..+..
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666666666666666666655555555555555555555544443
No 272
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.55 E-value=9.1e-05 Score=59.73 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..+..+.+.+| +++|.||+||||||++.++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 34566777774 88999999999999999975
No 273
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.55 E-value=0.00013 Score=71.49 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=27.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 19 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred eeceEEEecCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 46677888886 889999999999999998763
No 274
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00013 Score=73.06 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=33.5
Q ss_pred CceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+.+. |. -+.+..+.+.+| +.+|+|+|||||||++.+|.-
T Consensus 3 ~l~~~~l~~~-~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 3 LIETRDLCYS-YSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred eEEEEEEEEE-eCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4556666653 21 246677788887 888999999999999999863
No 275
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.54 E-value=0.1 Score=51.11 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 002747 200 NHLNKGDALVLELEAT 215 (885)
Q Consensus 200 ~~l~~~~~~~~~~~~~ 215 (885)
-+++.+...+..+..+
T Consensus 74 fqlddi~~qlr~~rte 89 (499)
T COG4372 74 FQLDDIRPQLRALRTE 89 (499)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3344443333333333
No 276
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.54 E-value=0.00013 Score=71.18 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=31.3
Q ss_pred eeEEEEE--ecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 22 ITRVRLE--NFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 22 i~~i~l~--nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..+.+. +..-+.+..+.+.+| +.+|+|||||||||++++|.
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555543 112246677788887 88899999999999999985
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.54 E-value=8.2e-05 Score=69.01 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|.+..+.|.+| +++|+|||||||||++..|.
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677888886 88899999999999999875
No 278
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.54 E-value=0.00011 Score=73.45 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=26.9
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.|.+| ++++.|||||||||+|.+|.-
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 5677788887 999999999999999998754
No 279
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.54 E-value=0.00014 Score=73.28 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=33.1
Q ss_pred ceeeEEEEEecc--------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 20 GTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 20 m~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.++.|.+. |+ .+.+..+.+.+| +++|+||||||||||+..|+-
T Consensus 3 l~~~~l~~~-y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (290)
T PRK13634 3 ITFQKVEHR-YQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG 55 (290)
T ss_pred EEEEEEEEE-ECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 556666654 22 346677788887 899999999999999999863
No 280
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00013 Score=72.02 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=32.4
Q ss_pred ceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 20 GTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 20 m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.++.|.+. |+ -+.+..+.+.+| +++|+||||||||||+..|.
T Consensus 5 l~~~~l~~~-~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14249 5 IKIRGVNFF-YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALN 51 (251)
T ss_pred EEEEEEEEE-ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455666553 22 246677788886 88899999999999999975
No 281
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.53 E-value=0.00013 Score=75.44 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=32.5
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.|..|... |+. +.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 14 ~L~l~~l~~~-~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 14 LVELRGISKS-FDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred eEEEEEEEEE-ECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3455565553 332 34667777775 899999999999999998763
No 282
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.53 E-value=0.00013 Score=71.10 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred ecceeeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 46777888886 88999999999999999865
No 283
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.53 E-value=8.2e-05 Score=71.61 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 78899999999999999985
No 284
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.52 E-value=8.1e-05 Score=72.33 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=26.3
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 34 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILG 34 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4567778776 888999999999999999874
No 285
>PRK09039 hypothetical protein; Validated
Probab=97.52 E-value=0.025 Score=57.68 Aligned_cols=20 Identities=15% Similarity=0.208 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 002747 850 EQLSAQVNRLNQRLKHESHQ 869 (885)
Q Consensus 850 ~~~~~~i~~~~~~~~~~~~~ 869 (885)
......+..+-..+......
T Consensus 237 ~~~~~~L~~ia~~l~~~~~~ 256 (343)
T PRK09039 237 PEGQAEIAKLAAALIELAKE 256 (343)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34455566666666655444
No 286
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.52 E-value=0.00014 Score=72.92 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.7
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. |+ -+.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 39 ~l~i~~l~~~-~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 87 (285)
T PRK14254 39 VIEARDLNVF-YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINR 87 (285)
T ss_pred eEEEEEEEEE-ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4566666654 22 246677788886 888999999999999999863
No 287
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.52 E-value=8.5e-05 Score=70.99 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=27.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 46677788776 888999999999999999863
No 288
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.51 E-value=0.061 Score=47.70 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 640 KIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCF 684 (885)
Q Consensus 640 ~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 684 (885)
.+.+|+..=..+..+...+...+..+...-..+..++..++..+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333334444444443333
No 289
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.50 E-value=9.1e-05 Score=70.16 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=28.1
Q ss_pred ccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 31 MCHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 31 ~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
..|-+..|.+.+| +++|+||||+||||++.+|.-
T Consensus 17 ~~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 17 ETFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 4455566777776 999999999999999999973
No 290
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00015 Score=74.72 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=33.2
Q ss_pred CceeeEEEEEec-c---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENF-M---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf-~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..++.|... | + -+.+..+.+.+| +++|+|||||||||++.+|.-
T Consensus 3 ~l~i~~l~~~-~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 3 GLKLQAVRKS-YDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred EEEEEeEEEE-eCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 4566666654 3 2 235667777776 888999999999999998753
No 291
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.50 E-value=9.9e-05 Score=70.88 Aligned_cols=31 Identities=32% Similarity=0.447 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 46677788886 88999999999999999874
No 292
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00016 Score=72.75 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=33.3
Q ss_pred CceeeEEEEEecc--------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..++.+.+. |. .+.+..+.+.+| +.+|+||||||||||+..|.-
T Consensus 1 mi~~~~v~~~-y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 1 MIKFEKVNYT-YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred CEEEEEEEEE-eCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 4556666554 22 246677778776 889999999999999998863
No 293
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.49 E-value=0.00017 Score=68.35 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=26.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| ++.|+|+|||||||++.+|.-
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 46677788776 888999999999999998753
No 294
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.49 E-value=0.00016 Score=71.56 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=33.1
Q ss_pred CceeeEEEEEecc--cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM--CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~--~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.++.|.+. |+ -+.+..+.|.+| +++|+|+||||||||+..|.-
T Consensus 4 ~l~~~~l~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 51 (254)
T PRK10418 4 QIELRNIALQ-AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG 51 (254)
T ss_pred EEEEeCeEEE-eccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556666653 22 246677788886 888999999999999998753
No 295
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.49 E-value=9.6e-05 Score=69.82 Aligned_cols=33 Identities=42% Similarity=0.500 Sum_probs=28.4
Q ss_pred ccccceeEEeCCc--eEEEEcCCCCchHHHHHHHH
Q 002747 31 MCHSSLQIELGEW--VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 31 ~~~~~~~i~f~~~--~~~I~G~NgsGKSti~dai~ 63 (885)
..|.+..+.+++| +.+|+||||+||||++..|.
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 3466677888887 79999999999999999987
No 296
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00016 Score=70.32 Aligned_cols=32 Identities=19% Similarity=0.409 Sum_probs=27.7
Q ss_pred cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 32 CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 32 ~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
-|.+..+.|.|| +.+|+|+|||||||++.+|.
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA 47 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 356777888887 88899999999999999985
No 297
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00021 Score=74.18 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=31.7
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..|..|... |+. +.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 19 ~l~l~~v~~~-~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia 66 (377)
T PRK11607 19 LLEIRNLTKS-FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLA 66 (377)
T ss_pred eEEEEeEEEE-ECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 4555555553 332 24566777776 88899999999999999876
No 298
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00019 Score=66.82 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=25.5
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+++.+| +..|+||+|+||||++..|.=
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5666677776 888999999999999998754
No 299
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.49 E-value=0.18 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002747 200 NHLNKGDALVLELEATIKPTEKELSELQ 227 (885)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 227 (885)
.++..+...+.++...+..+..+++.+.
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 300
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.48 E-value=0.0001 Score=71.46 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=25.2
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3556777776 88999999999999999975
No 301
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=0.00015 Score=71.83 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+..+.+.+| +.+|+|||||||||++.+|.-.
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35566777776 8889999999999999997543
No 302
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.48 E-value=0.00018 Score=69.71 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35667788887 888999999999999998763
No 303
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.48 E-value=0.00015 Score=72.10 Aligned_cols=31 Identities=39% Similarity=0.467 Sum_probs=26.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 29 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred eeeeeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 45667788776 88899999999999999975
No 304
>PRK09039 hypothetical protein; Validated
Probab=97.48 E-value=0.037 Score=56.55 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 639 EKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCF 684 (885)
Q Consensus 639 ~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 684 (885)
.++...+.++..++.++..+-.-+.--......++..+..++.++.
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~ 91 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLS 91 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444444444444444444333333333333334444444333333
No 305
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.48 E-value=0.0002 Score=69.28 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=26.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788776 88899999999999999885
No 306
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.47 E-value=0.00011 Score=68.01 Aligned_cols=32 Identities=34% Similarity=0.418 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45667778776 888999999999999999753
No 307
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.47 E-value=0.00027 Score=70.01 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=35.6
Q ss_pred CCCceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 17 SGAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
..++.++.+.+. |+ -+.+..+.|.|| +++|+|+|||||||++.+|.-
T Consensus 17 ~~~i~~~~l~~~-~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 17 GGEIKIHDLCVR-YENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred CceEEEEEEEEE-eCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 344667777665 32 246677788886 888999999999999999853
No 308
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.46 E-value=0.00019 Score=68.77 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=25.3
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIA 45 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 4566777775 88899999999999999985
No 309
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00017 Score=71.26 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=27.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+..+.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45667788776 88899999999999999986443
No 310
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.46 E-value=0.00018 Score=71.41 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=32.6
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+..+..+.+. |+ -+.+..+.|.+| +.+|+|+||||||||+..|.-
T Consensus 7 ~l~~~nl~~~-~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 55 (261)
T PRK14258 7 AIKVNNLSFY-YDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR 55 (261)
T ss_pred eEEEeeEEEE-eCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445555543 22 246677788776 888999999999999999873
No 311
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0002 Score=72.31 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 27 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 59 (289)
T PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG 59 (289)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35566777887 899999999999999999863
No 312
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.45 E-value=0.073 Score=47.21 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 408 EKLSKEKNEIRRISDEIEDYDKKCREIRSEI 438 (885)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l 438 (885)
....++...+.++..-...++.+++.++..+
T Consensus 158 ~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 158 QQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555444
No 313
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00021 Score=69.84 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.1
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++..|.-
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46777888887 888999999999999998753
No 314
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00023 Score=65.09 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=25.0
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+..+++.+| +.+|+||+|||||||+.+|..
T Consensus 22 ~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred eEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence 445556665 888999999999999999887
No 315
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.44 E-value=0.00012 Score=70.49 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=27.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|.+..+.+.+| +.+|+||||||||||+.+|.-.+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45667777776 89999999999999999976443
No 316
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00019 Score=71.97 Aligned_cols=45 Identities=22% Similarity=0.354 Sum_probs=34.4
Q ss_pred CceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..+..+.+. |+ -+.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 5 ~l~~~~l~~~-~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~G 54 (283)
T PRK13636 5 ILKVEELNYN-YSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG 54 (283)
T ss_pred eEEEEeEEEE-eCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5666777664 21 235677788887 889999999999999999854
No 317
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.44 E-value=0.00014 Score=68.70 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=26.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.+| +.+|+|+||||||||+.+|.
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 45667788887 88899999999999999975
No 318
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.44 E-value=0.00013 Score=69.56 Aligned_cols=32 Identities=34% Similarity=0.440 Sum_probs=26.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+..|.-
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35667778776 899999999999999998743
No 319
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00021 Score=71.50 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=34.1
Q ss_pred CceeeEEEEEecc------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.++.|.+. |. .+.+..+.+.+| +++|+|+|||||||++.+|.-
T Consensus 4 ~l~~~~l~~~-~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~G 55 (277)
T PRK13642 4 ILEVENLVFK-YEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred eEEEEEEEEE-cCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 5667777765 22 246667777776 888999999999999998763
No 320
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.43 E-value=0.00022 Score=72.88 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=32.6
Q ss_pred CceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.++.|... |. -+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 1 mI~~~~lsk~-y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 1 MIKLSNITKV-FHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CEEEEEEEEE-ECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555666543 32 135666777776 888999999999999999864
No 321
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.43 E-value=0.00021 Score=70.78 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=26.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 35667777776 88899999999999999974
No 322
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.43 E-value=0.00011 Score=66.83 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=23.0
Q ss_pred EEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 38 IELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 38 i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.|.+| +++|+|||||||||++..|.-.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 456665 8889999999999999987643
No 323
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.43 E-value=0.00023 Score=78.31 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=32.9
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..+..|... |+ -+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 11 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 58 (510)
T PRK15439 11 LLCARSISKQ-YSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIA 58 (510)
T ss_pred eEEEEeEEEE-eCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555555543 22 246777788887 89999999999999999976
No 324
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00024 Score=69.54 Aligned_cols=32 Identities=31% Similarity=0.342 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.-
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 46667778776 888999999999999999853
No 325
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.42 E-value=0.00024 Score=69.63 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=27.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45667778776 899999999999999999863
No 326
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.42 E-value=0.00013 Score=71.07 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=25.3
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~ 68 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILS 68 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566777776 88899999999999999975
No 327
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00013 Score=72.56 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+|||||||||++.+|.
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45667778776 88899999999999999875
No 328
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00014 Score=68.84 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=26.1
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +.+|+||||||||||++.|.-
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcc
Confidence 35566777776 888999999999999998653
No 329
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00014 Score=70.78 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+||||||||||+.+|.
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~ 50 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLM 50 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88899999999999999985
No 330
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00018 Score=71.04 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=27.7
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+..+.|.+| +.+|+|+||||||||+++|.-.
T Consensus 21 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 21 LFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46777888887 8889999999999999987643
No 331
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00025 Score=72.75 Aligned_cols=46 Identities=30% Similarity=0.456 Sum_probs=34.3
Q ss_pred CceeeEEEEEec-------ccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENF-------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf-------~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|..+..|.+. | .-+.+..+.+.+| +.+|+|+||||||||+.+|.-.
T Consensus 3 ~L~v~~l~~~-y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 3 LLDIRNLTIE-FKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred eEEEeeeEEE-EeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 5566667664 3 1246667777877 8889999999999999998643
No 332
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00026 Score=69.02 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.|| +++|+|||||||||++.+|.
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~ 46 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIA 46 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 56777888887 88899999999999999873
No 333
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00014 Score=71.67 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=25.6
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.+.|| +.+|+|||||||||++.+|.
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 5667777776 88899999999999999985
No 334
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.39 E-value=0.00019 Score=81.17 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=32.8
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..+..|... |+ -|.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 3 ~l~i~~ls~~-~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriia 50 (635)
T PRK11147 3 LISIHGAWLS-FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILN 50 (635)
T ss_pred EEEEeeEEEE-eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 4556665543 33 246777888887 88899999999999999865
No 335
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.39 E-value=0.0002 Score=79.73 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=27.1
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 23 l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G 55 (556)
T PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 55 (556)
T ss_pred eeCceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35677788886 899999999999999999763
No 336
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.38 E-value=0.00029 Score=68.00 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+|+|||||||++++|.
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 46677788887 88999999999999999985
No 337
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.38 E-value=0.00015 Score=73.53 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.+| +.+|+|||||||||++.+|.
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 45677788887 88899999999999999876
No 338
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.38 E-value=0.00016 Score=67.89 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +.+|+||||||||||++.|.-
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35667777776 888999999999999999853
No 339
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00024 Score=70.32 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +.+|+|+||||||||+.+|.-
T Consensus 24 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 56 (261)
T PRK14263 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNR 56 (261)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 46777888887 888999999999999998853
No 340
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00033 Score=66.67 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=27.2
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.+..+.+.+| .++|+|+|||||||++..+.-++-
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 4556777877 999999999999999888765443
No 341
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.36 E-value=0.00018 Score=69.58 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +.+|+|||||||||++.+|.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 46677788876 88899999999999999885
No 342
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.35 E-value=0.00027 Score=61.47 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=29.1
Q ss_pred CceeeEEEEEecccccceeEEe----CC-ceEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMCHSSLQIEL----GE-WVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f----~~-~~~~I~G~NgsGKSti~dai~~ 64 (885)
|..+..+++ +|+...+.| .+ .++.|.||+||||||++.-|.-
T Consensus 1 ~l~L~~V~~----~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 1 MLALDDVRF----SYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CccccceEE----eeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHh
Confidence 345555553 255545544 33 4888999999999999998763
No 343
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.35 E-value=4.5e-05 Score=78.30 Aligned_cols=24 Identities=54% Similarity=0.846 Sum_probs=0.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 44 VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 44 ~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
+|+|+|+||||||||++||.+++.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~~ 24 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLFS 24 (303)
T ss_dssp ------------------------
T ss_pred CCcccccccccccccccccccccc
Confidence 689999999999999999998876
No 344
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.35 E-value=0.00026 Score=77.87 Aligned_cols=45 Identities=27% Similarity=0.213 Sum_probs=32.1
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..++.|.+. |+. +.+..+.|.+| +++|+|||||||||++.+|.-
T Consensus 3 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 51 (490)
T PRK10938 3 SLQISQGTFR-LSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAG 51 (490)
T ss_pred eEEEEeEEEE-cCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4445555543 222 35667777776 888999999999999998763
No 345
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00031 Score=71.42 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=34.0
Q ss_pred CceeeEEEEEecc--------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..++.+.+. |. -+.+..+.+.+| +++|+|+||||||||+.+|.-
T Consensus 21 ~l~~~nl~~~-y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~G 74 (320)
T PRK13631 21 ILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74 (320)
T ss_pred eEEEEeEEEE-eCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4566666654 21 246677788887 889999999999999999863
No 346
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.34 E-value=0.00019 Score=69.66 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=27.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+..+.|.+| +.+|+||||||||||+..|.-.
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 56778888887 8889999999999999987643
No 347
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.00025 Score=70.04 Aligned_cols=44 Identities=30% Similarity=0.333 Sum_probs=32.0
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|-.+..+... |+. |.+..+.|.+| +.+|+||||||||||++.|.
T Consensus 10 ~i~~~~~~~~-~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 10 VFNISRLYLY-INDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred heeeeeEEEe-cCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3445555543 222 46677788887 88999999999999999876
No 348
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.33 E-value=0.00024 Score=79.18 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=34.9
Q ss_pred CceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.++.|.+. |+ -|.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 4 ~i~~~nls~~-~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~ 52 (552)
T TIGR03719 4 IYTMNRVSKV-VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMA 52 (552)
T ss_pred EEEEeeEEEe-cCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5666766654 33 257778888887 89999999999999999987
No 349
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00033 Score=71.54 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=34.3
Q ss_pred CceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|+.++.|.+. |+ -+.+..+.+.+| +..|+|+|||||||++.+|.-.+
T Consensus 3 ~L~v~~l~~~-~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 3 LLNVDKLSVH-FGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred eEEEeCeEEE-ECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4566666654 22 235667788887 88899999999999999986433
No 350
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.29 E-value=0.17 Score=49.32 Aligned_cols=93 Identities=5% Similarity=0.088 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002747 739 KLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYREL 818 (885)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 818 (885)
.+...+..+...+..-.........++..+..++..++.+...+..+.+.+...+........ .+..++..++.+..+.
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~-~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR-QLQAELQELQDKYAEC 288 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444444444444444433333333 4444555555555555
Q ss_pred HHHHHHHHHHHhhh
Q 002747 819 ELLRQDSCRKASVI 832 (885)
Q Consensus 819 ~~~l~~~~~~~~~~ 832 (885)
..-+.+.++.++.+
T Consensus 289 ~~mL~EaQEElk~l 302 (306)
T PF04849_consen 289 MAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554444
No 351
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.00024 Score=62.97 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=24.8
Q ss_pred eEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 37 QIELGEW-VNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 37 ~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
++....| ++.|.|||||||||++.-|...|-.
T Consensus 22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred eEEeccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 3333444 8889999999999999988776643
No 352
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.29 E-value=0.00043 Score=68.58 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=28.5
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+..+.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 46677788887 88899999999999999986544
No 353
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.28 E-value=0.00034 Score=77.62 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=33.5
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..+..|.+. |+ -|.+..+.|.+| +.+|+||||||||||+.+|.-
T Consensus 1 ml~i~~ls~~-~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 49 (530)
T PRK15064 1 MLSTANITMQ-FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGG 49 (530)
T ss_pred CEEEEEEEEE-eCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455566543 32 246777888886 889999999999999999873
No 354
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.27 E-value=0.44 Score=52.26 Aligned_cols=52 Identities=6% Similarity=0.145 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAER 688 (885)
Q Consensus 637 ~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 688 (885)
+...+..+..++..++..+.....+...++..+..++.++...+..+..+..
T Consensus 279 ~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 279 LQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665555555555555555555544444444433333333
No 355
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.26 E-value=0.00028 Score=77.52 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=32.7
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..+... |+ -+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 260 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 260 RIVLNNGVVS-YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred eEEEeceEEE-ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5556665543 22 235666777776 899999999999999999764
No 356
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.26 E-value=0.00033 Score=77.13 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=33.0
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|..++.|... |+ -+.+..+.|.+| +++|+||||||||||+.+|.-.+
T Consensus 4 ~i~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 4 LLQLKGIDKA-FPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEeeeEEE-eCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455555543 22 235667777776 88899999999999999886443
No 357
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.26 E-value=0.00036 Score=59.78 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=25.0
Q ss_pred eeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 36 LQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 36 ~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
..+.+++| +.+|+||+|+||||++.+++...
T Consensus 22 isl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34445665 88999999999999999987654
No 358
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=97.26 E-value=0.00039 Score=71.04 Aligned_cols=41 Identities=32% Similarity=0.487 Sum_probs=28.8
Q ss_pred eEEEEEecccc--------cceeEEeCCceEE-EEcCCCCchHHHHHHHH
Q 002747 23 TRVRLENFMCH--------SSLQIELGEWVNF-ITGQNGSGKSAILTALC 63 (885)
Q Consensus 23 ~~i~l~nf~~~--------~~~~i~f~~~~~~-I~G~NgsGKSti~dai~ 63 (885)
..|.+.|.--. ...++...||.++ |+||||+|||+++..|-
T Consensus 480 ~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILg 529 (728)
T KOG0064|consen 480 NGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILG 529 (728)
T ss_pred cceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHh
Confidence 34566655443 1235566788777 99999999999988763
No 359
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.25 E-value=0.00023 Score=78.61 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=33.4
Q ss_pred CceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|+.+..|......-+.+..+.+.+| +++|+|||||||||++.+|.-.
T Consensus 265 ~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 265 VFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred EEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4455555543111246777788887 8889999999999999998743
No 360
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.25 E-value=0.0016 Score=74.71 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCcceecc------cCCCCCCCHHHHHHHHHHHHHHHHHHHhhccC
Q 002747 812 ESQYRELELLRQDSCRKASVICPESEIEA------LGGWDGSTPEQLSAQVNRLNQRLKHESHQYEH 872 (885)
Q Consensus 812 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 872 (885)
...+..+..+...+.+.+..+........ ........+.+++.++...+.+...++.-|..
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ 631 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA 631 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677776776666654432211110 01111223456666666666666666555543
No 361
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.00028 Score=67.23 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=28.4
Q ss_pred cccc---cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 30 FMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 30 f~~~---~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
|+.| .+..+++..| +..+.|||||||||++..|.-...
T Consensus 12 ~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 12 FGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred cccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC
Confidence 5555 4455566555 888999999999999998865444
No 362
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.0005 Score=70.20 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=34.5
Q ss_pred CCCceeeEEEEEecc-----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 17 SGAGTITRVRLENFM-----CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 17 ~~~m~i~~i~l~nf~-----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..+..+..+.+. |. .+.+..+.+.+| +++|+|+||||||||+.+|.
T Consensus 78 ~~~i~~~nls~~-y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~ 129 (329)
T PRK14257 78 ANVFEIRNFNFW-YMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN 129 (329)
T ss_pred CceEEEEeeEEE-ecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345666666654 21 246677778886 88999999999999999985
No 363
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.00044 Score=77.99 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=32.2
Q ss_pred ceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 20 GTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 20 m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..|..|... |+. |.+..+.|.+| +.+|+||||||||||+..|.
T Consensus 2 i~i~nls~~-~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~ 48 (638)
T PRK10636 2 IVFSSLQIR-RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred EEEEEEEEE-eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445555533 332 46778888886 88999999999999999876
No 364
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.22 E-value=0.00032 Score=68.42 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.3
Q ss_pred eCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 40 LGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 40 f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|.+| +.+|+||||||||||+.+|.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3344 88999999999999999875
No 365
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.0004 Score=76.55 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=32.8
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|..+..|... |+. +.+..+.|.+| +++|+|||||||||++.+|.-.
T Consensus 5 ~l~~~nl~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 5 LLEMKNITKT-FGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred eEEEeeeEEE-eCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555432 222 35677788887 8889999999999999998643
No 366
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.20 E-value=0.00041 Score=76.66 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=26.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 35677788887 88999999999999999975
No 367
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.18 E-value=0.00047 Score=76.53 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=33.0
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..|.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|+
T Consensus 319 ~l~~~~l~~~-~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 319 ALEVENLTKG-FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred eEEEEeeEEe-eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 5566666543 22 245677788776 89999999999999999986
No 368
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.18 E-value=0.00047 Score=76.79 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=35.9
Q ss_pred CCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.|+.+..+.+. |+ -+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 323 ~~l~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 323 KVIEAENLSKS-FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred eEEEEEeEEEE-ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 36777777764 22 246777888886 888999999999999999873
No 369
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.18 E-value=0.00032 Score=72.47 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=26.2
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+++.+| +++|+|+|||||||++.+|.-
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~G 72 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNG 72 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 5667777776 889999999999999999853
No 370
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00051 Score=75.65 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=33.2
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..+..+... |+ -+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 4 ~l~~~~l~~~-~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 52 (501)
T PRK11288 4 YLSFDGIGKT-FPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSG 52 (501)
T ss_pred eEEEeeeEEE-ECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4555665543 22 246677788887 889999999999999999764
No 371
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.15 E-value=0.00063 Score=70.45 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=23.6
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+..+.|.+| +++|+|||||||||++.+|.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345555665 89999999999999999875
No 372
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.00072 Score=62.49 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=25.4
Q ss_pred cceeEEeCCceEE-EEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEWVNF-ITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~~~~-I~G~NgsGKSti~dai~ 63 (885)
++..+++.+|-++ |+|++||||||+..+|.
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 5778888888555 99999999999988874
No 373
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.15 E-value=0.00068 Score=69.31 Aligned_cols=48 Identities=27% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 18 GAGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 18 ~~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.++.++.|.+. |+ -+.+..+.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 11 ~~L~i~~l~~~-~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 11 ALLDVKDLRVT-FSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred ceEEEeCeEEE-EecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35667777654 32 235667777887 88899999999999999986433
No 374
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00038 Score=66.85 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=24.0
Q ss_pred ceeEEeCCceEEEEcCCCCchHHHHHHHH
Q 002747 35 SLQIELGEWVNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 35 ~~~i~f~~~~~~I~G~NgsGKSti~dai~ 63 (885)
+..+.+.+.+.+|+||||||||||+.+|.
T Consensus 16 ~vsl~i~~e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 16 KIDFDLNEEVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred CceEEEcceeEEEECCCCCCHHHHHHHHh
Confidence 45566666788899999999999999875
No 375
>PLN03073 ABC transporter F family; Provisional
Probab=97.14 E-value=0.00073 Score=76.57 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=33.8
Q ss_pred CCCCceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 16 RSGAGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 16 ~~~~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
..+|..+..|.+. |+ -|.+..+.+.+| ..+|+|+||||||||+..|.
T Consensus 174 ~~~~I~i~nls~~-y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 174 AIKDIHMENFSIS-VGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred CceeEEEceEEEE-eCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 3445555555543 22 245667777887 88899999999999999986
No 376
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.14 E-value=0.081 Score=60.86 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=23.6
Q ss_pred ceeEEeCC--ceEEEEcCCCCchHHHHHHHHH
Q 002747 35 SLQIELGE--WVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 35 ~~~i~f~~--~~~~I~G~NgsGKSti~dai~~ 64 (885)
+..|.+++ .+.+|+|||++||||+|..|..
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl 349 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGL 349 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHH
Confidence 44555654 3778999999999999999853
No 377
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.13 E-value=0.00052 Score=76.48 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=33.6
Q ss_pred CceeeEEEEEecc---cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFM---CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~---~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|+.+..+.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.
T Consensus 322 ~l~~~~l~~~-~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~ 369 (552)
T TIGR03719 322 VIEAENLSKG-FGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMIT 369 (552)
T ss_pred EEEEeeEEEE-ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 5666666554 22 246677788886 88999999999999999986
No 378
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.12 E-value=0.00062 Score=75.12 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 17 l~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G 49 (500)
T TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49 (500)
T ss_pred ecceEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46677788887 888999999999999999863
No 379
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.11 E-value=0.00056 Score=61.49 Aligned_cols=30 Identities=37% Similarity=0.560 Sum_probs=23.2
Q ss_pred ceeEEeCC-ceEEEEcCCCCchHHHHHHHHH
Q 002747 35 SLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 35 ~~~i~f~~-~~~~I~G~NgsGKSti~dai~~ 64 (885)
..+++... .|.+|.|.|||||||++.+|.-
T Consensus 24 ~~sL~I~~g~FvtViGsNGAGKSTlln~iaG 54 (263)
T COG1101 24 GLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG 54 (263)
T ss_pred cCceeecCCceEEEEcCCCccHHHHHHHhhC
Confidence 34555544 4888999999999999999753
No 380
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.10 E-value=0.00061 Score=77.13 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=33.6
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|+.+..|.+. |+. |.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 319 ~l~~~~l~~~-~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 367 (635)
T PRK11147 319 VFEMENVNYQ-IDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367 (635)
T ss_pred eEEEeeeEEE-ECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4566666653 322 46677788887 888999999999999998873
No 381
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00042 Score=72.21 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=25.8
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 4556677776 899999999999999999763
No 382
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.10 E-value=0.00053 Score=75.55 Aligned_cols=39 Identities=15% Similarity=0.349 Sum_probs=30.5
Q ss_pred EEEEecc--cccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 25 VRLENFM--CHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 25 i~l~nf~--~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|.+.|+. .+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 269 l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~ 310 (510)
T PRK15439 269 LTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLY 310 (510)
T ss_pred EEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 4444443 357788888887 88899999999999999886
No 383
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.09 E-value=0.00078 Score=69.56 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.3
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.+.+| +++|+|||||||||++.+|.
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 52 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIA 52 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4566677775 89999999999999999986
No 384
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00079 Score=67.53 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=29.9
Q ss_pred ceeeEEEEEecccc---cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 20 GTITRVRLENFMCH---SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 20 m~i~~i~l~nf~~~---~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.|+.|.- .|+.+ .+..+++.+| +.++.||+||||||+|.+|.
T Consensus 6 l~i~~v~k-~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 6 LEIRNVSK-SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred EEEEeeee-ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 44444432 24443 4556666776 88899999999999998864
No 385
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00066 Score=76.60 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=33.0
Q ss_pred CceeeEEEEEeccc---ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENFMC---HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf~~---~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|..+..|... |+. +.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 312 ~l~~~~l~~~-y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 312 LLKMEKVSAG-YGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred eEEEEeeEEE-eCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4555666542 332 35667777776 888999999999999999873
No 386
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.08 E-value=0.0005 Score=71.34 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=24.0
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+..+.|.+| +++|+||||||||||+.+|.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia 44 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA 44 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445566775 89999999999999999875
No 387
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.07 E-value=0.00037 Score=67.21 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=21.8
Q ss_pred EeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 39 ELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 39 ~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.|.+| +++|+|+||||||||+.+|.-
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 28 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILG 28 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 35565 889999999999999999763
No 388
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.07 E-value=0.65 Score=50.46 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 265 QTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISLATKEKLELEGEL 339 (885)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (885)
++..+..++.++..++..+..++.+...++..+..++..+.+.+.++..+...+..+.+.+.....++...-..+
T Consensus 97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L 171 (1265)
T KOG0976|consen 97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDL 171 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333333344444444444444444444444444444444444444444444444444444444444444333333
No 389
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.00054 Score=66.07 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=22.2
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAIL 59 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~ 59 (885)
.+..+.+.+| +.+|+|+||||||||+
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 5667777776 8889999999999995
No 390
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.05 E-value=0.00069 Score=75.10 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.7
Q ss_pred CceeeEEEEEecc--------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENFM--------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf~--------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|..+..|.+. |. -+.+..+.+.+| +++|+||||||||||+.+|.-.
T Consensus 279 ~l~~~~l~~~-~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 279 IIKVRNVSKR-YISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred eEEEeccEEE-eccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5666666553 21 245666777776 8999999999999999998743
No 391
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.04 E-value=0.00073 Score=75.01 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred CceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|..+..+.+. |+ -+.+..+.|.+| +++|+||||||||||+.+|.-.+
T Consensus 5 ~l~~~~l~~~-~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 5 LLAIENLSVA-FRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eEEEeceEEE-ecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5666666654 32 246677778776 88999999999999999987433
No 392
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.04 E-value=0.00053 Score=70.52 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.8
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+..+.+.+| +++|+|||||||||++.+|.-.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl 42 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL 42 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 35666777776 9999999999999999987543
No 393
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.04 E-value=0.00065 Score=66.09 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=25.4
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
++..+.|..| +++|+|++||||||++..+.+
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~ 43 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHHH
Confidence 6777777655 999999999999999976643
No 394
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.03 E-value=0.00085 Score=68.56 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=25.7
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+++.+| +.+|+|+||||||||+.+|.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~ 68 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAII 68 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 5667777777 88899999999999999985
No 395
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.02 E-value=0.00055 Score=63.38 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=25.5
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
++..+.+.+| ...|+|+|||||||++.-|.-++-
T Consensus 44 ~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 4556666666 555999999999999988765443
No 396
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.01 E-value=0.0008 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 002747 43 WVNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~ 65 (885)
.+..|+|.+|||||||+.||.|.
T Consensus 33 dVisIIGsSGSGKSTfLRCiN~L 55 (256)
T COG4598 33 DVISIIGSSGSGKSTFLRCINFL 55 (256)
T ss_pred CEEEEecCCCCchhHHHHHHHhh
Confidence 48889999999999999999875
No 397
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.00 E-value=0.00076 Score=74.27 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=27.6
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +++|+|||||||||++.+|.-
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence 57778888886 888999999999999988763
No 398
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0012 Score=67.55 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=26.1
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.+..+.+.+| +.+|+|+||||||||+.+|.-.
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 5566777776 8889999999999999998543
No 399
>PLN03073 ABC transporter F family; Provisional
Probab=96.99 E-value=0.0011 Score=75.25 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=34.9
Q ss_pred CCceeeEEEEEecc----cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM----CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~----~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.|..+..+.+. |+ -|.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 507 ~~L~~~~ls~~-y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~G 557 (718)
T PLN03073 507 PIISFSDASFG-YPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISG 557 (718)
T ss_pred ceEEEEeeEEE-eCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 45666777654 31 246677788876 899999999999999999873
No 400
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.99 E-value=0.00059 Score=75.30 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 308 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 35566677776 888999999999999999863
No 401
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.00065 Score=74.95 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=26.4
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 278 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred ccceeeEEcCCcEEEEeCCCCCCHHHHHHHHh
Confidence 35667777776 88899999999999999986
No 402
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.97 E-value=0.85 Score=50.11 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 641 IKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDV 700 (885)
Q Consensus 641 i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 700 (885)
+.....++..+...+..++.++......+..++.........+..+...+..++.++...
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433333334444444444444444433
No 403
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.97 E-value=0.0006 Score=74.96 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=32.3
Q ss_pred CceeeEEEEEecccccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 19 AGTITRVRLENFMCHSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
|..++.+.+.+-.-+.+..+.+.+| +++|+||||||||||+.+|.
T Consensus 250 ~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 295 (491)
T PRK10982 250 ILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLF 295 (491)
T ss_pred EEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHc
Confidence 3444444443111246777788887 99999999999999999986
No 404
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=96.95 E-value=0.00086 Score=74.36 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=28.3
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-.+
T Consensus 16 l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45677788776 88999999999999999987543
No 405
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.95 E-value=0.92 Score=50.25 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002747 193 DLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKI 230 (885)
Q Consensus 193 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (885)
.....+...+..+..........+..++..+..|+...
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~ 66 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQM 66 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444445555555555544433
No 406
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=96.92 E-value=0.00094 Score=74.14 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCceeeEEEEEecc--------------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 18 GAGTITRVRLENFM--------------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 18 ~~m~i~~i~l~nf~--------------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.|..++.|.+. |+ -+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 274 ~~l~~~~l~~~-~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 274 PLLDVEQLQVA-FPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred CcccccCcEEE-eecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35667777653 31 246667777776 889999999999999999873
No 407
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.91 E-value=0.0011 Score=74.86 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=34.4
Q ss_pred CceeeEEEEEecc-------cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 19 AGTITRVRLENFM-------CHSSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 19 ~m~i~~i~l~nf~-------~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
|..+..+.+. |+ -+.+..+.|.+| +.+|+|+||||||||+.+|.-.+
T Consensus 12 ~l~v~~l~~~-y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 12 VLAVENLNIA-FMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eEEEeceEEE-ecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4566666653 32 235667777776 88899999999999999987443
No 408
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.90 E-value=0.00087 Score=61.57 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=22.5
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+..++..|| +..+.|||||||||++..|.-
T Consensus 20 ~isf~v~~G~i~GllG~NGAGKTTtfRmILg 50 (300)
T COG4152 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILG 50 (300)
T ss_pred ceeeeecCCeEEEeecCCCCCccchHHHHhc
Confidence 334444566 777999999999999877654
No 409
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0014 Score=60.79 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=26.5
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.+..+.+.+| +.+++||+||||||+|.-|.-.+
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 5566666665 89999999999999999886543
No 410
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.88 E-value=0.00074 Score=66.20 Aligned_cols=26 Identities=38% Similarity=0.309 Sum_probs=21.6
Q ss_pred eCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 40 LGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 40 f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
+.+| ++.|+||||||||||+.+|.-.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5565 8899999999999999886543
No 411
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0018 Score=60.03 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=22.7
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
++..-...|| -=+|+|||||||||++.-+.--.
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 3333344555 55699999999999988765433
No 412
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.001 Score=69.59 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=26.3
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.+..+.+.+| ++.+.|.|||||||||..|.=++
T Consensus 25 ~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~ 58 (500)
T COG1129 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY 58 (500)
T ss_pred ccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc
Confidence 4566677776 89999999999999999865433
No 413
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.84 E-value=0.71 Score=47.33 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002747 200 NHLNKGDALVLELEATIKPTEKELSELQ 227 (885)
Q Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 227 (885)
.++...+..+..++..+....++...|+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~ 65 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLE 65 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.82 E-value=0.0011 Score=63.03 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=25.9
Q ss_pred cccceeEEeCC---ceEEEEcCCCCchHHHHHHHHH
Q 002747 32 CHSSLQIELGE---WVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 32 ~~~~~~i~f~~---~~~~I~G~NgsGKSti~dai~~ 64 (885)
.|-+-.|.+++ .+.+|+||||+||||++..|..
T Consensus 16 ~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 16 SFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEcceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 45455566654 5789999999999999999973
No 415
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.00096 Score=73.50 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.2
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.+.+| +++|+||||||||||+.+|.-
T Consensus 269 l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G 301 (501)
T PRK11288 269 REPISFSVRAGEIVGLFGLVGAGRSELMKLLYG 301 (501)
T ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcC
Confidence 46777788776 899999999999999999873
No 416
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.80 E-value=0.0012 Score=72.52 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=26.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+..+.|.+| +++|+||||||||||+.+|.-
T Consensus 14 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~G 46 (491)
T PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG 46 (491)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 46677778776 888999999999999999763
No 417
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.80 E-value=0.0012 Score=67.66 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=26.4
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
.+..+.|.+| ++.+.|.|||||||||..| |+++.
T Consensus 21 d~V~l~v~~GeIHaLLGENGAGKSTLm~iL-~G~~~ 55 (501)
T COG3845 21 DDVSLSVKKGEIHALLGENGAGKSTLMKIL-FGLYQ 55 (501)
T ss_pred CceeeeecCCcEEEEeccCCCCHHHHHHHH-hCccc
Confidence 5677777776 9999999999999998753 34443
No 418
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.78 E-value=0.43 Score=43.93 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002747 376 SEIEAKLKELQCEIDAANI 394 (885)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~ 394 (885)
..+...+......+..+..
T Consensus 128 ~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 128 SQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333344443333
No 419
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.78 E-value=0.0016 Score=70.08 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=25.9
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
|.+..+.|.+| -..|+|+||+||||||..|.-
T Consensus 19 ~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG 51 (530)
T COG0488 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAG 51 (530)
T ss_pred ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcC
Confidence 36677788876 666999999999999998653
No 420
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.78 E-value=1.4 Score=49.71 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 637 YDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQ 677 (885)
Q Consensus 637 ~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 677 (885)
+..+++.++..+..+.....+++...+.+..+...+..+..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555444444444444444444444444333
No 421
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.78 E-value=1.3 Score=49.26 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 002747 851 QLSAQVNRLNQRLKHESHQ 869 (885)
Q Consensus 851 ~~~~~i~~~~~~~~~~~~~ 869 (885)
+++..++.-+.++.+++++
T Consensus 955 eLEq~L~~eR~rL~elRK~ 973 (980)
T KOG0980|consen 955 ELEQSLQAERARLGELRKQ 973 (980)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554
No 422
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.76 E-value=0.0013 Score=61.09 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 43 WVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
.+.+|+||||||||||+++|.-.++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36789999999999999999877654
No 423
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.76 E-value=0.0012 Score=62.07 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 42 EWVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 42 ~~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.|+.+|+||+||||||++.+|...+.
T Consensus 1 ~GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 38999999999999999998765543
No 424
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=96.76 E-value=0.0019 Score=72.86 Aligned_cols=31 Identities=29% Similarity=0.285 Sum_probs=25.9
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.+.+| +++|+|+||||||||+.+|.-
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 5566677776 888999999999999999863
No 425
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.57 Score=44.68 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002747 262 LKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAEIAVMVEKTSEVRRRKDELQQSISL 327 (885)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (885)
+......+..+......++.+++.+..++.++...+.....++......+..+..++..+...+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555444444444444444444444444444444444444444333
No 426
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.73 E-value=0.0014 Score=62.28 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=25.3
Q ss_pred ccccceeEEe--CCceEEEEcCCCCchHHHHHHHHH
Q 002747 31 MCHSSLQIEL--GEWVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 31 ~~~~~~~i~f--~~~~~~I~G~NgsGKSti~dai~~ 64 (885)
..|-...+.| .+.+.+|+||||+||||++..|..
T Consensus 17 ~~~v~n~~~l~~~~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 17 EPFVPNDTELDPERQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred CceEeeeEEecCCceEEEEECCCCCChHHHHHHHHH
Confidence 3443334444 446999999999999999999963
No 427
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.73 E-value=0.0013 Score=61.33 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHh
Q 002747 42 EWVNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 42 ~~~~~I~G~NgsGKSti~dai~~~l 66 (885)
.++.+|+|||||||||++.+|.-.+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3588899999999999999987554
No 428
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.72 E-value=1.4 Score=48.99 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 684 FSAERNRMSKELAFQDVKNSFAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCE 763 (885)
Q Consensus 684 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (885)
..+..++..+......+...+.. -..-...+...+..+...+..++.+...+...+..+...-......+..+..
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~-----~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEE-----QQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665 5556666666676677777766666666666666666666666666666666
Q ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 764 SAKEEVDTFEAA---------EKELMEIEKNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCR 827 (885)
Q Consensus 764 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 827 (885)
.+...+..+... ...+......+..+...+....-++. .+...+..+...+..+.....++-.
T Consensus 422 ~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~-~v~~~l~~a~~~v~~L~~~t~~li~ 493 (560)
T PF06160_consen 422 KLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMD-EVNKQLEEAEDDVETLEEKTEELID 493 (560)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555544322 22333334444444444443333343 4445555555555555554444444
No 429
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.71 E-value=0.0011 Score=61.87 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 43 WVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.+.+|+||||||||||+..|.-.++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3778999999999999999965544
No 430
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.0019 Score=60.60 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=24.3
Q ss_pred cceeEEeCC-ceEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGE-WVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~-~~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.+.+ .+.+|+||||+||||++.+|..
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344455554 6899999999999999999863
No 431
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.68 E-value=0.0023 Score=72.50 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=35.4
Q ss_pred CceeeEEEEEec------ccccceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 19 AGTITRVRLENF------MCHSSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 19 ~m~i~~i~l~nf------~~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
|+.++.+...-- .-+.+..++|.|| +++|+||||||||||+++|+-.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 57 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL 57 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566777766521 1246777788887 8899999999999999998743
No 432
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.67 E-value=0.0014 Score=61.41 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=21.5
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHH
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTAL 62 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai 62 (885)
+..++..+| +..+.|+|||||||.+.-+
T Consensus 42 disf~IP~G~ivgflGaNGAGKSTtLKmL 70 (325)
T COG4586 42 DISFEIPKGEIVGFLGANGAGKSTTLKML 70 (325)
T ss_pred eeeeecCCCcEEEEEcCCCCcchhhHHHH
Confidence 444555666 7779999999999988764
No 433
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.64 E-value=0.0033 Score=64.99 Aligned_cols=53 Identities=25% Similarity=0.182 Sum_probs=40.1
Q ss_pred CceeeEEEEEecccc--cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCC
Q 002747 19 AGTITRVRLENFMCH--SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCRAK 71 (885)
Q Consensus 19 ~m~i~~i~l~nf~~~--~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~ 71 (885)
-.+|.++.+.-+|.+ .+.++++.+| --+|.|+||+||||++.+|.-+...-|+
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~ 130 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE 130 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc
Confidence 367777776644443 7888999887 4559999999999999998776665443
No 434
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=1.5 Score=48.30 Aligned_cols=79 Identities=8% Similarity=0.142 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHHHHh
Q 002747 387 CEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRAIER 466 (885)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (885)
.....+...+......+.+++..+.+...++.........+..++..+...+..+..... .. .....+...+..
T Consensus 566 ~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~-----~~-s~d~~L~EElk~ 639 (698)
T KOG0978|consen 566 QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES-----GA-SADEVLAEELKE 639 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cc-cccHHHHHHHHH
Confidence 333333333333334444444444444444444444444444444444444444332211 11 223445566665
Q ss_pred hcCCC
Q 002747 467 HHHKF 471 (885)
Q Consensus 467 ~~~~~ 471 (885)
+.+..
T Consensus 640 yK~~L 644 (698)
T KOG0978|consen 640 YKELL 644 (698)
T ss_pred HHhce
Confidence 55443
No 435
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.63 E-value=0.0046 Score=51.97 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=26.2
Q ss_pred EEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCCCCC
Q 002747 38 IELGEW-VNFITGQNGSGKSAILTALCIAFGCRAKG 72 (885)
Q Consensus 38 i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~~~~ 72 (885)
+...+| +..|.||+|+||||++-.+.-.|.+..+.
T Consensus 23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~ 58 (213)
T COG4136 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58 (213)
T ss_pred EEecCCcEEEEECCCCccHHHHHHHHHhhcccCcce
Confidence 334565 67799999999999988777666665554
No 436
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0022 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=27.1
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.+..|++-|| +-.|+|.+||||||++.||.--|.
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~ 57 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT 57 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhcccC
Confidence 4556666787 666999999999999999976554
No 437
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.59 E-value=1.2 Score=46.57 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=26.7
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002747 176 KDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEK 221 (885)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 221 (885)
.++|+++.....+..+...+..+...+..+...+.++...-..-..
T Consensus 94 ~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~ 139 (570)
T COG4477 94 ADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSE 139 (570)
T ss_pred hhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3556666666666666666666666666666555555444333333
No 438
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.57 E-value=0.0023 Score=59.04 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred eeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 36 LQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 36 ~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
..++..+| +.+|.||+|+||||++..|.-.+
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 33344454 88899999999999999875444
No 439
>PRK13409 putative ATPase RIL; Provisional
Probab=96.54 E-value=0.0023 Score=71.09 Aligned_cols=30 Identities=33% Similarity=0.251 Sum_probs=24.1
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
....+.|.+| +++|+||||||||||+.+|.
T Consensus 356 ~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~ 386 (590)
T PRK13409 356 EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLA 386 (590)
T ss_pred EecceEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3344556666 89999999999999999875
No 440
>PLN03211 ABC transporter G-25; Provisional
Probab=96.53 E-value=0.0019 Score=72.71 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.5
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.+.|| +++|.|||||||||++++|.
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 4556677787 99999999999999999975
No 441
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.52 E-value=0.0027 Score=55.32 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=23.8
Q ss_pred ccceeEEeCCceEE-EEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEWVNF-ITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~~~~-I~G~NgsGKSti~dai~ 63 (885)
.+++.+.+..|-|+ |+|.|||||||+..-|.
T Consensus 29 V~~vSFtL~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred ccceEEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence 35566677777665 89999999999877654
No 442
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.51 E-value=0.0018 Score=61.70 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 44 VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 44 ~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
+..|.|+|||||||++..|.-.|.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999987774
No 443
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.50 E-value=0.0022 Score=63.27 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 41 GEWVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 41 ~~~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.|.+..|.|||||||||++..|.-.|.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356888999999999999998876664
No 444
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.49 E-value=0.96 Score=44.25 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=6.0
Q ss_pred cHHHHHHHHHHc
Q 002747 139 RKQELLELIDHF 150 (885)
Q Consensus 139 ~~~~~~~~~~~~ 150 (885)
++..+...+..|
T Consensus 36 s~~~~~~~l~y~ 47 (306)
T PF04849_consen 36 SPEQIEETLRYF 47 (306)
T ss_pred CHHHHHHHHHHH
Confidence 334555555554
No 445
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.48 E-value=0.0023 Score=56.35 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHH
Q 002747 41 GEWVNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 41 ~~~~~~I~G~NgsGKSti~dai~~~ 65 (885)
.+..++++|++|+|||||+++|.-.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4569999999999999999997653
No 446
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=1.9 Score=47.47 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 409 KLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQ 442 (885)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~ 442 (885)
+...+..++..+..++.....-+..+...+..+.
T Consensus 849 e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 849 ELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 3333444444444444444444444444444443
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.47 E-value=0.0023 Score=65.64 Aligned_cols=26 Identities=46% Similarity=0.691 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 42 EWVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 42 ~~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
.|+.+|+|||||||||++.+|.-.+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 38999999999999999999875553
No 448
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.47 E-value=0.0021 Score=61.15 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 41 GEWVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 41 ~~~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
..|+.+|+||.||||||.+.|+.--+..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 4599999999999999999998654443
No 449
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.46 E-value=2.3 Score=48.27 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002747 186 TLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIR 231 (885)
Q Consensus 186 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 231 (885)
.+|.+.......++..|+......-.++.++..+...++..-.++.
T Consensus 17 ~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr 62 (769)
T PF05911_consen 17 SGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLR 62 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHH
Confidence 4555555666666666655555555555555555555555444444
No 450
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.45 E-value=2.6 Score=48.90 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.7
Q ss_pred CCCccc
Q 002747 103 AFKPEI 108 (885)
Q Consensus 103 ~~~~~~ 108 (885)
+|.|++
T Consensus 355 P~vPev 360 (1317)
T KOG0612|consen 355 PVVPEV 360 (1317)
T ss_pred CCCCcC
Confidence 444444
No 451
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.45 E-value=1.6 Score=46.56 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHh
Q 002747 429 KKCREIRSEIRELQQ 443 (885)
Q Consensus 429 ~~~~~l~~~l~~l~~ 443 (885)
.+++.+..+++-|+.
T Consensus 344 sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 344 SDYEEIKKELSILKA 358 (629)
T ss_pred ccHHHHHHHHHHHHH
Confidence 445555555555543
No 452
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.44 E-value=0.004 Score=70.74 Aligned_cols=45 Identities=27% Similarity=0.249 Sum_probs=32.1
Q ss_pred CceeeEEEEEec--c--cccceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 19 AGTITRVRLENF--M--CHSSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 19 ~m~i~~i~l~nf--~--~~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
+..++.+.+. | + -+.+..+.+.+| ..+|+||||||||||+..|.-
T Consensus 451 ~i~~~nv~~~-~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~G 500 (659)
T TIGR00954 451 GIKFENIPLV-TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGE 500 (659)
T ss_pred eEEEEeeEEE-CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556666652 2 1 135566677776 788999999999999998753
No 453
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.43 E-value=0.0023 Score=59.52 Aligned_cols=21 Identities=43% Similarity=0.539 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 002747 44 VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 44 ~~~I~G~NgsGKSti~dai~~ 64 (885)
+.+|+||||+||||++.+|..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 357999999999999999974
No 454
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.00081 Score=57.09 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 42 EWVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 42 ~~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
|-+.++.|||||||||+...+...|-
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~ 27 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL 27 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc
Confidence 45788999999999999887766543
No 455
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.43 E-value=0.0029 Score=57.94 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 43 WVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
.+.+|+|+|||||||++.+|.-.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47889999999999999999876654
No 456
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.39 E-value=1.8 Score=46.29 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 002747 203 NKGDALVLELEA 214 (885)
Q Consensus 203 ~~~~~~~~~~~~ 214 (885)
.++...+.++..
T Consensus 124 ~~lk~~lee~~~ 135 (629)
T KOG0963|consen 124 EELKEELEEVNN 135 (629)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 457
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=96.38 E-value=0.01 Score=60.56 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=30.8
Q ss_pred eCCceEEEEcCCCCchHHHHHHHHHHhcCCCCCccc
Q 002747 40 LGEWVNFITGQNGSGKSAILTALCIAFGCRAKGTQR 75 (885)
Q Consensus 40 f~~~~~~I~G~NgsGKSti~dai~~~l~~~~~~~~r 75 (885)
+..|+|+|+|.+--||||||.||..+-|..-+..+|
T Consensus 242 Ip~GvTlIvGGGyHGKSTLL~Ale~GVYnHipGDGR 277 (448)
T PF09818_consen 242 IPKGVTLIVGGGYHGKSTLLEALERGVYNHIPGDGR 277 (448)
T ss_pred eCCcEEEEECCCCccHHHHHHHHHhcccCCCCCCCc
Confidence 356899999999999999999999988887765444
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.36 E-value=0.0029 Score=60.21 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhc
Q 002747 43 WVNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
-+.+|+|||||||||++.+|.-.|.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3677999999999999999987665
No 459
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.36 E-value=2.2 Score=47.09 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002747 194 LLQSIYNHLNKGDALVLELEATIKPTEKELSELQRK 229 (885)
Q Consensus 194 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (885)
.+..+...+..+...+..+...+..+...+..+..+
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e 364 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEE 364 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 460
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0041 Score=55.08 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=24.3
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.+.+| +.++.||+|+||||+++.+.
T Consensus 22 e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~A 52 (259)
T COG4525 22 EDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52 (259)
T ss_pred hccceeecCCCEEEEEcCCCccHHHHHHHHh
Confidence 5566677665 77899999999999998764
No 461
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=96.34 E-value=0.0039 Score=55.55 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCchHHHHHHH
Q 002747 43 WVNFITGQNGSGKSAILTAL 62 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai 62 (885)
.-++++|.||||||||+..+
T Consensus 41 sRcLlVGaNGaGKtTlLKiL 60 (291)
T KOG2355|consen 41 SRCLLVGANGAGKTTLLKIL 60 (291)
T ss_pred ceEEEEecCCCchhhhHHHh
Confidence 47889999999999998876
No 462
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0031 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCchHHHHHHHHHH
Q 002747 43 WVNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~ 65 (885)
.+.+|+||+|+|||||+.+|.--
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 47889999999999999998653
No 463
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0035 Score=66.01 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=24.4
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.+.|| .++|+|+|||||||++.+|.
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 4456666665 99999999999999998864
No 464
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.30 E-value=0.0032 Score=70.58 Aligned_cols=29 Identities=38% Similarity=0.451 Sum_probs=23.1
Q ss_pred eeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 36 LQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 36 ~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
..+++.|| ..+|+|+|||||||++..+.-
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44566776 788999999999999887543
No 465
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0049 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCchHHHHHHHHH
Q 002747 42 EWVNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 42 ~~~~~I~G~NgsGKSti~dai~~ 64 (885)
+|+|.|+|++||||||+++.|.-
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaG 46 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAG 46 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhc
Confidence 58999999999999999998754
No 466
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0053 Score=52.20 Aligned_cols=42 Identities=29% Similarity=0.534 Sum_probs=28.3
Q ss_pred EEEEEecccc-cc----eeEEeC--Cce-EEEEcCCCCchHHHHHHHHHH
Q 002747 24 RVRLENFMCH-SS----LQIELG--EWV-NFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 24 ~i~l~nf~~~-~~----~~i~f~--~~~-~~I~G~NgsGKSti~dai~~~ 65 (885)
+|++.|+..| +. ..|.|+ .|- .|+.||+|+||||++..+...
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnll 51 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHH
Confidence 4566666555 43 345553 354 447899999999999887654
No 467
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.29 E-value=1.6 Score=48.39 Aligned_cols=118 Identities=8% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC-
Q 002747 640 KIKDLERAALHVQEEAQQCRKRKRDSEERL--------QDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNSFAADAGP- 710 (885)
Q Consensus 640 ~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 710 (885)
...-++.++..++.++...+.++..++.+. ..+..++..+..++..++.++..++..+..+...+......
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~ 241 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVL 241 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 344445555555555555555554443221 12334445555555556666666666666555544320000
Q ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 711 --PSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLS 757 (885)
Q Consensus 711 --~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (885)
........+..++..++.++..+...+..-...+..+..++..+...
T Consensus 242 ~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~ 290 (498)
T TIGR03007 242 LAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQ 290 (498)
T ss_pred CcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Confidence 00012234455555566666555554443333344444444444333
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.28 E-value=0.0037 Score=55.82 Aligned_cols=29 Identities=34% Similarity=0.446 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 42 EWVNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 42 ~~~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
++..+|+||+|+||||++.+|...++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 35788999999999999999988777643
No 469
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.27 E-value=0.004 Score=70.44 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=27.1
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHh
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l 66 (885)
.+..+.|.|| .++|+||||||||||++.|.-.+
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5566777775 88899999999999999986544
No 470
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0068 Score=60.07 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=27.1
Q ss_pred eeEEEEEeccc-cc-------ceeEEeCCc-eEEEEcCCCCchHHHHHH
Q 002747 22 ITRVRLENFMC-HS-------SLQIELGEW-VNFITGQNGSGKSAILTA 61 (885)
Q Consensus 22 i~~i~l~nf~~-~~-------~~~i~f~~~-~~~I~G~NgsGKSti~da 61 (885)
.++|++.|.+- |. +..+....| +.+|+|.|||||||++.-
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~L 368 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAML 368 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHH
Confidence 77888887552 22 233333333 788999999999997653
No 471
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.25 E-value=0.0038 Score=70.01 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.0
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+..+.+.|| .++|+|||||||||+++.|.
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~ 362 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ 362 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 4556677776 88899999999999999885
No 472
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=96.23 E-value=0.0034 Score=65.05 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=22.4
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILT 60 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~d 60 (885)
.+..+.+.+| +++|+||+|||||||+.
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4556666665 88999999999999999
No 473
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.22 E-value=0.0034 Score=58.42 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 002747 44 VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 44 ~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+|+|||||||||++..|.-.+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 78899999999999999997544
No 474
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=2.6 Score=46.43 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=6.3
Q ss_pred ccCCC-CCCC-CC
Q 002747 6 FSSES-GYGP-QR 16 (885)
Q Consensus 6 ~~~~~-~~~~-~~ 16 (885)
|++++ .|++ |+
T Consensus 355 F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 355 FADVTAPSIPNPR 367 (970)
T ss_pred HhhccCCCCCCCc
Confidence 55656 5555 45
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.21 E-value=0.0038 Score=59.08 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 44 VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 44 ~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
+..|+||+||||||+..+|.-.|+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999987773
No 476
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=96.20 E-value=4.1 Score=48.55 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002747 350 VNRVKGLEQQVHDIQE 365 (885)
Q Consensus 350 ~~~~~~~~~~~~~l~~ 365 (885)
..++..++..+..+++
T Consensus 214 ~~~~~~l~~~~~~Lq~ 229 (1109)
T PRK10929 214 KKRSQQLDAYLQALRN 229 (1109)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 477
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.19 E-value=0.005 Score=53.22 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred ceeEEeCCceEE-EEcCCCCchHHHHHH
Q 002747 35 SLQIELGEWVNF-ITGQNGSGKSAILTA 61 (885)
Q Consensus 35 ~~~i~f~~~~~~-I~G~NgsGKSti~da 61 (885)
++.+...+|-++ |+||+||||||++--
T Consensus 28 ~V~L~v~~Ge~vaiVG~SGSGKSTLl~v 55 (228)
T COG4181 28 GVELVVKRGETVAIVGPSGSGKSTLLAV 55 (228)
T ss_pred cceEEecCCceEEEEcCCCCcHHhHHHH
Confidence 445566777544 999999999998754
No 478
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.17 E-value=0.005 Score=66.47 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=26.4
Q ss_pred ceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhcCC
Q 002747 35 SLQIELGEW-VNFITGQNGSGKSAILTALCIAFGCR 69 (885)
Q Consensus 35 ~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~~~ 69 (885)
+..+.+.+| -.+|+||||+||||++..|.-.++..
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~ 375 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL 375 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC
Confidence 344444454 77899999999999999987766654
No 479
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.17 E-value=0.0042 Score=69.83 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHHhc
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIAFG 67 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~l~ 67 (885)
++..+.+.|| .+.|+||+||||||++..|.-.+-
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456667777 555999999999999998765443
No 480
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.16 E-value=0.0043 Score=70.01 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.2
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
.+....+.|| +++|.|||||||||++++|.
T Consensus 42 ~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~ 72 (617)
T TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALA 72 (617)
T ss_pred cCCEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 5667778887 89999999999999999984
No 481
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.16 E-value=0.006 Score=58.30 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=23.6
Q ss_pred ceeEEeC-CceEEEEcCCCCchHHHHHHHHHH
Q 002747 35 SLQIELG-EWVNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 35 ~~~i~f~-~~~~~I~G~NgsGKSti~dai~~~ 65 (885)
+..+++. ..+++|+||||+||||++..|..+
T Consensus 22 ~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 22 DVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred eEEEeecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 3444443 348999999999999999998643
No 482
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.16 E-value=0.0057 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCchHHHHHHHHHHhcC
Q 002747 43 WVNFITGQNGSGKSAILTALCIAFGC 68 (885)
Q Consensus 43 ~~~~I~G~NgsGKSti~dai~~~l~~ 68 (885)
.+.++.|+.|||||||+.+|.-.||.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 48889999999999999999999875
No 483
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.16 E-value=0.0046 Score=69.04 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=26.1
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCI 64 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~ 64 (885)
.+..+.+.|| .++|+|||||||||+++.|.-
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5566777886 888999999999999998764
No 484
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.13 E-value=2.4 Score=47.45 Aligned_cols=236 Identities=11% Similarity=0.149 Sum_probs=0.0
Q ss_pred eeeechhhHhHhhhcCChhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 002747 158 CVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLQSIYNHLNKGDALVLELEATIKPTEKELSELQRKIRNMEHVE 237 (885)
Q Consensus 158 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (885)
...+.|...+.|+...++...+..-..... ..+..+...+..+.....+...++..++.++++++.---.-.+..
T Consensus 138 ~~l~~~~~~~~lLD~~~~~~~~~~~~~~~~-----~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e 212 (563)
T TIGR00634 138 QLLFRPDEQRQLLDTFAGANEKVKAYRELY-----QAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDE 212 (563)
T ss_pred HHhcCHHHHHHHHHHhcCchHHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002747 238 EITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIE--------KLKDRIPRCQAKIDS-RHSILESLRDCFMKKKAEIAVMV 308 (885)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 308 (885)
++..+...+.... .+...+......+. ..-..+......+.. ....+..+...+..+...+..+.
T Consensus 213 ~L~~e~~~L~n~e------~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~ 286 (563)
T TIGR00634 213 ALEAEQQRLSNLE------KLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEAT 286 (563)
T ss_pred HHHHHHHHHhCHH------HHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 002747 309 EKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLKELQCE 388 (885)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (885)
..+..+...+..--..+..++..+..+..........+..+......++.++..+.... ..+..++.++..+..+
T Consensus 287 ~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~-----~~le~L~~el~~l~~~ 361 (563)
T TIGR00634 287 RELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSD-----ESLEALEEEVDKLEEE 361 (563)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCH-----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 002747 389 IDAANITLSRMKEEDSALSEK 409 (885)
Q Consensus 389 ~~~~~~~~~~l~~~~~~l~~~ 409 (885)
+..+...+...+......-..
T Consensus 362 l~~~a~~Ls~~R~~~a~~l~~ 382 (563)
T TIGR00634 362 LDKAAVALSLIRRKAAERLAK 382 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 485
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.13 E-value=0.0047 Score=68.90 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=0.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.|| .++|+||+||||||+++.|.
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
No 486
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.13 E-value=0.0055 Score=45.73 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=0.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHh
Q 002747 44 VNFITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 44 ~~~I~G~NgsGKSti~dai~~~l 66 (885)
+.+|.|+.||||||+..++.-.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
No 487
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.13 E-value=0.0067 Score=57.63 Aligned_cols=32 Identities=22% Similarity=0.376 Sum_probs=0.0
Q ss_pred cceeEEeCCc-eEEEEcCCCCchHHHHHHHHHH
Q 002747 34 SSLQIELGEW-VNFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 34 ~~~~i~f~~~-~~~I~G~NgsGKSti~dai~~~ 65 (885)
.+..+.+.+| +.+|+||||+||||++..|..+
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHHH
No 488
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.13 E-value=1.3 Score=48.11 Aligned_cols=164 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHhhhhccCCCCCCcchHHHHHH
Q 002747 664 DSEERLQDLQQHQQNVKRRCFSAERNRMS---------------------KELAFQDVKNSFAADAGPPSASAVDEISQE 722 (885)
Q Consensus 664 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (885)
.+..++..++.++..+..++..++..+.. +......+...... +..++..++.+
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~ 152 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRKST-----LRAQLELILAQ 152 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChHHhhcccchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002747 723 ISNIQEEIQEKEIILEKLQFSMNEAEAKVEDL----------KLSFQSLCESAKEEVDTFEAAEKELMEIEKNLQTSESE 792 (885)
Q Consensus 723 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (885)
+..+..++..++..+..+...+..+...+... ..++......+..+...+..+..++..+...+..+...
T Consensus 153 i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 153 IKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002747 793 KAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVI 832 (885)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 832 (885)
+..............+.....++..+...+..+...+...
T Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 233 RQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 489
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.12 E-value=0.0048 Score=59.74 Aligned_cols=30 Identities=23% Similarity=0.213 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 41 GEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 41 ~~~~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
.+-+..|.||||||||||+..|.-.|....
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc
No 490
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.12 E-value=0.0048 Score=68.88 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=0.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.+| .++|+|||||||||+++.|.
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHh
No 491
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0099 Score=57.23 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred CceeeEEEEEeccc-----c---cceeEEeCCc-eEEEEcCCCCchHHHHHHH
Q 002747 19 AGTITRVRLENFMC-----H---SSLQIELGEW-VNFITGQNGSGKSAILTAL 62 (885)
Q Consensus 19 ~m~i~~i~l~nf~~-----~---~~~~i~f~~~-~~~I~G~NgsGKSti~dai 62 (885)
|..|..+. .-|.. + .+..+...+| +..|+|.+||||||++.+|
T Consensus 1 mI~l~~vs-K~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~i 52 (339)
T COG1135 1 MIELENVS-KTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI 52 (339)
T ss_pred CeEEEeee-eeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHH
No 492
>PRK13409 putative ATPase RIL; Provisional
Probab=96.11 E-value=0.0038 Score=69.36 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=0.0
Q ss_pred eCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 40 LGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 40 f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+| ++.|+|||||||||++..|.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~ 120 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILS 120 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHh
No 493
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0068 Score=61.69 Aligned_cols=55 Identities=25% Similarity=0.469 Sum_probs=0.0
Q ss_pred CCccccCCC-CCCCCCCCCceeeEEEEEecccccceeEEeCCceEE-EEcCCCCchHHHHHHHHHHhcCCC
Q 002747 2 GDYRFSSES-GYGPQRSGAGTITRVRLENFMCHSSLQIELGEWVNF-ITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~~m~i~~i~l~nf~~~~~~~i~f~~~~~~-I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
|.--||-++ +|.+.++ -..+..+...||-++ ++||+|+||||||..+.-.+--++
T Consensus 536 G~i~fsnvtF~Y~p~k~--------------vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~s 592 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKP--------------VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNS 592 (790)
T ss_pred CeEEEEEeEEecCCCCc--------------eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccC
No 494
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.0061 Score=63.39 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=0.0
Q ss_pred ccceeEEeCCceEE-EEcCCCCchHHHHHHHHHHh
Q 002747 33 HSSLQIELGEWVNF-ITGQNGSGKSAILTALCIAF 66 (885)
Q Consensus 33 ~~~~~i~f~~~~~~-I~G~NgsGKSti~dai~~~l 66 (885)
+++..++...|-.+ |+|+||||||||+.+|.-.+
T Consensus 368 L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 368 LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
No 495
>PF13245 AAA_19: Part of AAA domain
Probab=96.10 E-value=0.007 Score=45.94 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCchH-HHHHHHHHHh
Q 002747 41 GEWVNFITGQNGSGKS-AILTALCIAF 66 (885)
Q Consensus 41 ~~~~~~I~G~NgsGKS-ti~dai~~~l 66 (885)
.+++.+|.||-||||| |++..+...+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
No 496
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.0067 Score=51.84 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=0.0
Q ss_pred eCCceEEEEcCCCCchHHHHHHHHHHhcCCC
Q 002747 40 LGEWVNFITGQNGSGKSAILTALCIAFGCRA 70 (885)
Q Consensus 40 f~~~~~~I~G~NgsGKSti~dai~~~l~~~~ 70 (885)
|...+.+|+||+||||-|+|++..-.|-+.+
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~ 33 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRP 33 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccCC
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.09 E-value=0.0075 Score=58.09 Aligned_cols=35 Identities=34% Similarity=0.330 Sum_probs=0.0
Q ss_pred ccccceeEEeCCce---EEEEcCCCCchHHHHHHHHHH
Q 002747 31 MCHSSLQIELGEWV---NFITGQNGSGKSAILTALCIA 65 (885)
Q Consensus 31 ~~~~~~~i~f~~~~---~~I~G~NgsGKSti~dai~~~ 65 (885)
..|-+-.+.++++- .+|+|||.+||||++..|..+
T Consensus 29 ~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~ 66 (235)
T PF00488_consen 29 KKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLI 66 (235)
T ss_dssp SSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceecceeecCCCceeEEEEeCCCccchhhHHHHHHHH
No 498
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.08 E-value=2.9 Score=45.77 Aligned_cols=471 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 224 SELQRKIRNMEHVEEITQDLQRLKKKLAWSWVYDVDRQLKEQTLKIEKLKDRIPRCQAKIDSRHSILESLRDCFMKKKAE 303 (885)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (885)
+.....+..-.-+.++......+...+...........+..-+......... +......++.++...+.++..++..
T Consensus 38 dlk~r~L~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetri---yRrdv~llEddlk~~~sQiriLQn~ 114 (1265)
T KOG0976|consen 38 DLKKRLLDAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRI---YRRDVNLLEDDLKHHESQIRILQNK 114 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002747 304 IAVMVEKTSEVRRRKDELQQSISLATKEKLELEGELVRNTSYMQKMVNRVKGLEQQVHDIQEQHVRNTQAEESEIEAKLK 383 (885)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 383 (885)
...++.+...+...+..++..+.....+++...+.+......+.....+|...-..+..-...+ .++..++.
T Consensus 115 c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~l--------t~~~~q~~ 186 (1265)
T KOG0976|consen 115 CLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEEL--------NEFNMEFQ 186 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH--------hHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcccHHHHHHH
Q 002747 384 ELQCEIDAANITLSRMKEEDSALSEKLSKEKNEIRRISDEIEDYDKKCREIRSEIRELQQHQTNKVTAFGGDRVISLLRA 463 (885)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 463 (885)
.+..+....+..+..+-.++.+.....+.....+.+...-...+..+...+......+ .++......
T Consensus 187 tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~l-------------tp~rk~~s~ 253 (1265)
T KOG0976|consen 187 TKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTL-------------TPLRKTCSM 253 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-------------hhHhhhhHH
Q ss_pred HHhhcCCCCCCCcccccccEEecCCCChHHHHHHHHccccCeEEecChhhHHHHHHHHHHhCCCCccEEEEecCCCCCCC
Q 002747 464 IERHHHKFKSPPIGPIGSHVTLVNGDTWAPAVEQAIGRLLNAFIVTDHKDALLLRGCAREANYNHLQIIIYDFSRPRLSL 543 (885)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 543 (885)
+.... . +-.+... .+.+....-..+...|.
T Consensus 254 i~E~d------------------~---~lq~sak--------~ieE~m~qlk~kns~L~--------------------- 283 (1265)
T KOG0976|consen 254 IEEQD------------------M---DLQASAK--------EIEEKMRQLKAKNSVLG--------------------- 283 (1265)
T ss_pred HHHHH------------------H---HHHHHHH--------HHHHHHHHHHHHHHHHh---------------------
Q ss_pred CCCCCCCCCCCchhhccccCchHHHHHhhccCCcceEEEeCChHHHHHHhhhcCCCCcceEEcccCCeeeecCCcccccc
Q 002747 544 PHHMLPHTKHPTTLSVLQSDNPTVINVLVDMGSAERQVLVRDYDVGKAVAFEQRISNLKEVYTLDGHKMFSRGSVQTILP 623 (885)
Q Consensus 544 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 623 (885)
+.-.-...++
T Consensus 284 -------------------~ElSqkeelV--------------------------------------------------- 293 (1265)
T KOG0976|consen 284 -------------------DELSQKEELV--------------------------------------------------- 293 (1265)
T ss_pred -------------------hhhhHHHHHH---------------------------------------------------
Q ss_pred cccccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002747 624 LNRRLRTGRLCGSYDEKIKDLERAALHVQEEAQQCRKRKRDSEERLQDLQQHQQNVKRRCFSAERNRMSKELAFQDVKNS 703 (885)
Q Consensus 624 ~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 703 (885)
..++.++..+.+....+.....+...- +.-+.-.+..+..+++..+-+.......+...+..++.+
T Consensus 294 -----------k~~qeeLd~lkqt~t~a~gdseqatky---lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKk 359 (1265)
T KOG0976|consen 294 -----------KELQEELDTLKQTRTRADGDSEQATKY---LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKK 359 (1265)
T ss_pred -----------HHHHHHHHHHHHHHHHhhccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q ss_pred hhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002747 704 FAADAGPPSASAVDEISQEISNIQEEIQEKEIILEKLQFSMNEAEAKVEDLKLSFQSLCESAKEEVDTFEAAEKELMEIE 783 (885)
Q Consensus 704 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (885)
... +...+..+...++..+.++..+.....+.+++++.+...+- .+.........+..++.....+++.+.
T Consensus 360 rd~-----al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if----~~e~~~~dhe~~kneL~~a~ekld~mg 430 (1265)
T KOG0976|consen 360 RDM-----ALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF----RLEQGKKDHEAAKNELQEALEKLDLMG 430 (1265)
T ss_pred HHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhccchhHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcceecccCCCCCCCHHHHHHHHHHHHHHH
Q 002747 784 KNLQTSESEKAHYEDVMRTRVVGAIKEAESQYRELELLRQDSCRKASVICPESEIEALGGWDGSTPEQLSAQVNRLNQRL 863 (885)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 863 (885)
..+-.+..+++.++.-.. +..-.....-.+..++-..+..+...+.....- ...++.++....+-.+++
T Consensus 431 thl~mad~Q~s~fk~Lke-~aegsrrraIeQcnemv~rir~l~~sle~qrKV----------eqe~emlKaen~rqakki 499 (1265)
T KOG0976|consen 431 THLSMADYQLSNFKVLKE-HAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKV----------EQEYEMLKAENERQAKKI 499 (1265)
T ss_pred HHHHHHHHHHhhHHHHHH-hhhhhHhhHHHHHHHHHHHHHHHhhChhhhcch----------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhccC
Q 002747 864 KHESHQYEH 872 (885)
Q Consensus 864 ~~~~~~~~~ 872 (885)
...+..|.+
T Consensus 500 efmkEeiQe 508 (1265)
T KOG0976|consen 500 EFMKEEIQE 508 (1265)
T ss_pred HHHHHHHHH
No 499
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.08 E-value=0.0052 Score=69.46 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=0.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.|.|| .++|+|+|||||||+++.|.
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~ 382 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ 382 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHh
No 500
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.08 E-value=0.0051 Score=68.69 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=0.0
Q ss_pred ccceeEEeCCc-eEEEEcCCCCchHHHHHHHH
Q 002747 33 HSSLQIELGEW-VNFITGQNGSGKSAILTALC 63 (885)
Q Consensus 33 ~~~~~i~f~~~-~~~I~G~NgsGKSti~dai~ 63 (885)
+.+..+.+.|| .++|+|||||||||+++.|+
T Consensus 339 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Done!